Psyllid ID: psy15421

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHEEEEEEEccccEEEEccccccEEEEEcEEccEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEccccccccEEcEEcccccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEccccccEEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccccEcccEEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEEcccccccccEEEEEEcccccEEEEEEEEccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEccccEEEEc
Coil and Loop (DISEMBL)
MNELDSLRQEAETLKNAIRDARKAACDTSlvtatgnmepigriqMRTRRTLRGHLAKIYAMhwgsdsrnlvsasqdgklivwdsyttnkvhaiplrsswvmtcayapsgsfvacggldnicsiyslktregnvrvsrelpghtgylsccrflddnqivtssgdmscalWDIETGQQCASFightgdvmslslapdmrtfvsgacdasaklwdirdgsckqtfpghesdinavtffpngwafatgsddatcRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLlagyddfncnvwdSMKTERAGilaghdnrvsclgvtedgmavaTGSWDSFLRIWN
Flexible Loop (DISEMBL)
MNELDSLRQEAETLKNAIrdarkaacdtslvtatgnmepigriqmrtrRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGmavatgswdsflriwn
Low Complexity Region (SEG)
MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN
Disordered region (IsUnstruct)
************************ACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW*
Disordered Region (DISOPRED)
*NELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN
Disordered Region (DISEMBL)
MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN
Disordered Region (DISPRO)
*NELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNExxxxxxxxxxxxxxxxxxxxxACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
O45040	340	Guanine nucleotide-bindin	N/A	N/A	1.0	1.0	0.920	0.0
P26308	340	Guanine nucleotide-bindin	yes	N/A	1.0	1.0	0.908	0.0
P17343	340	Guanine nucleotide-bindin	yes	N/A	1.0	1.0	0.902	0.0
Q61ZF6	340	Guanine nucleotide-bindin	N/A	N/A	1.0	1.0	0.902	0.0
Q5GIS3	341	Guanine nucleotide-bindin	N/A	N/A	0.997	0.994	0.887	0.0
P23232	341	Guanine nucleotide-bindin	N/A	N/A	0.997	0.994	0.882	0.0
P54313	340	Guanine nucleotide-bindin	yes	N/A	1.0	1.0	0.855	1e-176
P62880	340	Guanine nucleotide-bindin	yes	N/A	1.0	1.0	0.855	1e-176
P62879	340	Guanine nucleotide-bindin	yes	N/A	1.0	1.0	0.855	1e-176
P11017	340	Guanine nucleotide-bindin	yes	N/A	1.0	1.0	0.855	1e-176

>sp|O45040|GBB1_HOMAM Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Homarus americanus GN=GBETA1 PE=2 SV=1

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/340 (92%), Positives = 327/340 (96%)

Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           MN+LDSLRQEAE LKN IRDARK A DT+LV AT  M+PIGRIQMRTRRTLRGHLAKIYA
Sbjct: 1   MNDLDSLRQEAERLKNTIRDARKNALDTTLVQATAGMDPIGRIQMRTRRTLRGHLAKIYA 60

Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGS+VACGGLDNI
Sbjct: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNI 120

Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIYSLKTREGNVRVSRELPGHTGYLSCCRF+DDNQIVTSSGDM+CALWDIETGQQC  F
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFVDDNQIVTSSGDMTCALWDIETGQQCTQF 180

Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
            GHTGDVMSLSL+P+MRTF SGACDASAKLWDIRDG C+QTFPGHESDINAVTFFPNG A
Sbjct: 181 TGHTGDVMSLSLSPNMRTFTSGACDASAKLWDIRDGMCRQTFPGHESDINAVTFFPNGHA 240

Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS+SG+LLLAGYDDFNCNVWDSM
Sbjct: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGKLLLAGYDDFNCNVWDSM 300

Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           +TERAG+LAGHDNRVSCLGVTEDGMAVATGSWDSFL+IWN
Sbjct: 301 RTERAGVLAGHDNRVSCLGVTEDGMAVATGSWDSFLKIWN 340

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
Homarus americanus (taxid: 6706)

>sp|P26308|GBB1_DROME Guanine nucleotide-binding protein subunit beta-1 OS=Drosophila melanogaster GN=Gbeta13F PE=1 SV=1

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/340 (90%), Positives = 327/340 (96%)

Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           MNELDSLRQEAE+LKNAIRDARKAACDTSL+ A  ++EPIGRIQMRTRRTLRGHLAKIYA
Sbjct: 1   MNELDSLRQEAESLKNAIRDARKAACDTSLLQAATSLEPIGRIQMRTRRTLRGHLAKIYA 60

Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHWG+DSRNLVSASQDGKLIVWDS+TTNKVHAIPLRSSWVMTCAYAPSGS+VACGGLDN+
Sbjct: 61  MHWGNDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNM 120

Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIY+LKTREGNVRVSRELPGH GYLSCCRFLDDNQIVTSSGDMSC LWDIETG Q  SF
Sbjct: 121 CSIYNLKTREGNVRVSRELPGHGGYLSCCRFLDDNQIVTSSGDMSCGLWDIETGLQVTSF 180

Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
           +GHTGDVM+LSLAP  +TFVSGACDASAKLWDIR+G CKQTFPGHESDINAVTFFPNG A
Sbjct: 181 LGHTGDVMALSLAPQCKTFVSGACDASAKLWDIREGVCKQTFPGHESDINAVTFFPNGQA 240

Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS+SGRLLLAGYDDFNCNVWD+M
Sbjct: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTM 300

Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           K ER+GILAGHDNRVSCLGVTE+GMAVATGSWDSFLR+WN
Sbjct: 301 KAERSGILAGHDNRVSCLGVTENGMAVATGSWDSFLRVWN 340

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Drosophila melanogaster (taxid: 7227)

>sp|P17343|GBB1_CAEEL Guanine nucleotide-binding protein subunit beta-1 OS=Caenorhabditis elegans GN=gpb-1 PE=2 SV=2

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/340 (90%), Positives = 322/340 (94%)

Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           M+ELD LRQEAE LK+ IR+ARK+A DT+L T   N+EPIGRIQMRTRRTLRGHLAKIYA
Sbjct: 1   MSELDQLRQEAEQLKSQIREARKSANDTTLATVASNLEPIGRIQMRTRRTLRGHLAKIYA 60

Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHW SDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI
Sbjct: 61  MHWASDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120

Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDM+CALWDIETGQQC +F
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMTCALWDIETGQQCTAF 180

Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
            GHTGDVMSLSL+PD RTF+SGACDASAKLWDIRDG CKQTFPGHESDINAV FFP+G A
Sbjct: 181 TGHTGDVMSLSLSPDFRTFISGACDASAKLWDIRDGMCKQTFPGHESDINAVAFFPSGNA 240

Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS+SGRLL AGYDDFNCNVWDSM
Sbjct: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGRLLFAGYDDFNCNVWDSM 300

Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           + ERAG+LAGHDNRVSCLGVTEDGMAV TGSWDSFL+IWN
Sbjct: 301 RQERAGVLAGHDNRVSCLGVTEDGMAVCTGSWDSFLKIWN 340

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Caenorhabditis elegans (taxid: 6239)

>sp|Q61ZF6|GBB1_CAEBR Guanine nucleotide-binding protein subunit beta-1 OS=Caenorhabditis briggsae GN=gpb-1 PE=3 SV=1

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/340 (90%), Positives = 322/340 (94%)

Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           M+ELD LRQEAE LK+ IR+ARK+A DT+L T   N+EPIGRIQMRTRRTLRGHLAKIYA
Sbjct: 1   MSELDQLRQEAEQLKSQIREARKSANDTTLATVASNLEPIGRIQMRTRRTLRGHLAKIYA 60

Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHW SDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI
Sbjct: 61  MHWASDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120

Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDM+CALWDIETGQQC +F
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMTCALWDIETGQQCTAF 180

Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
            GHTGDVMSLSL+PD RTF+SGACDASAKLWDIRDG CKQTFPGHESDINAV FFP+G A
Sbjct: 181 TGHTGDVMSLSLSPDFRTFISGACDASAKLWDIRDGMCKQTFPGHESDINAVAFFPSGNA 240

Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS+SGRLL AGYDDFNCNVWDSM
Sbjct: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGRLLFAGYDDFNCNVWDSM 300

Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           + ERAG+LAGHDNRVSCLGVTEDGMAV TGSWDSFL+IWN
Sbjct: 301 RQERAGVLAGHDNRVSCLGVTEDGMAVCTGSWDSFLKIWN 340

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q5GIS3|GBB_PINFU Guanine nucleotide-binding protein subunit beta OS=Pinctada fucata PE=1 SV=1

 Score =  637 bits (1643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/339 (88%), Positives = 319/339 (94%)

Query: 2   NELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAM 61
           +EL++LRQE E LKN IR+ARKAA DT+L  A  N+E +GRIQMRTRRTLRGHLAKIYAM
Sbjct: 3   SELEALRQETEQLKNQIREARKAAADTTLNQAAVNVEQVGRIQMRTRRTLRGHLAKIYAM 62

Query: 62  HWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNIC 121
           HW SDSRNLVSASQDGKLIVWD YTTNKVHAIPLRSSWVMTCAYAPSGS+VACGGLDNIC
Sbjct: 63  HWASDSRNLVSASQDGKLIVWDGYTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNIC 122

Query: 122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFI 181
           SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQ  +F 
Sbjct: 123 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQTTAFT 182

Query: 182 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 241
           GHTGDVMSLSL+PDMRTFVSGACDASAKLWDIRDG CKQTF GHESDINA+T+FPNG+AF
Sbjct: 183 GHTGDVMSLSLSPDMRTFVSGACDASAKLWDIRDGMCKQTFSGHESDINAITYFPNGYAF 242

Query: 242 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 301
           ATGSDDATCRLFDIRADQE+ MYSHDNIICGITSVAFS+SGRLLL GYDDFNCNVWD ++
Sbjct: 243 ATGSDDATCRLFDIRADQEIGMYSHDNIICGITSVAFSKSGRLLLGGYDDFNCNVWDVLR 302

Query: 302 TERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
            ERAG+LAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN
Sbjct: 303 QERAGVLAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 341

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Pinctada fucata (taxid: 50426)

>sp|P23232|GBB_LOLFO Guanine nucleotide-binding protein subunit beta OS=Loligo forbesi PE=2 SV=1

 Score =  635 bits (1638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/339 (88%), Positives = 320/339 (94%)

Query: 2   NELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAM 61
           +EL++LRQE E LKN IR+ARKAA DT+L  AT N+EP+GRIQMRTRRTLRGHLAKIYAM
Sbjct: 3   SELEALRQETEQLKNQIREARKAAADTTLAMATANVEPVGRIQMRTRRTLRGHLAKIYAM 62

Query: 62  HWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNIC 121
           HW SDSRNLVSASQDGKLIVWD YTTNKVHAIPLRSSWVMTCAYAPSG++VACGGLDNIC
Sbjct: 63  HWASDSRNLVSASQDGKLIVWDGYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 122

Query: 122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFI 181
           SIYSLKTREGNVRVSRELPGHTGYLSCCRF+DDNQIVTSSGDM+CALW+IETG Q  SF 
Sbjct: 123 SIYSLKTREGNVRVSRELPGHTGYLSCCRFIDDNQIVTSSGDMTCALWNIETGNQITSFG 182

Query: 182 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 241
           GHTGDVMSLSLAPDMRTFVSGACDASAKL+DIRDG CKQTF GHESDINA+T+FPNG+AF
Sbjct: 183 GHTGDVMSLSLAPDMRTFVSGACDASAKLFDIRDGICKQTFTGHESDINAITYFPNGFAF 242

Query: 242 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 301
           ATGSDDATCRLFDIRADQE+ MYSHDNIICGITSVAFS+SGRLLL GYDDFNCNVWD +K
Sbjct: 243 ATGSDDATCRLFDIRADQEIGMYSHDNIICGITSVAFSKSGRLLLGGYDDFNCNVWDVLK 302

Query: 302 TERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
            ERAG+LAGHDNRVSCLGVTEDGMAVATGSWDSFL+IWN
Sbjct: 303 QERAGVLAGHDNRVSCLGVTEDGMAVATGSWDSFLKIWN 341

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Loligo forbesi (taxid: 6618)

>sp|P54313|GBB2_RAT Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Rattus norvegicus GN=Gnb2 PE=1 SV=4

 Score =  619 bits (1595), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 291/340 (85%), Positives = 315/340 (92%)

Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           M+EL+ LRQEAE L+N IRDARKA  D++L   T  ++P+GRIQMRTRRTLRGHLAKIYA
Sbjct: 1   MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA 60

Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHWG+DSR LVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG+FVACGGLDNI
Sbjct: 61  MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI 120

Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQI+TSSGD +CALWDIETGQQ   F
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGF 180

Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
            GH+GDVMSLSLAPD RTFVSGACDAS KLWD+RD  C+QTF GHESDINAV FFPNG+A
Sbjct: 181 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 240

Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           F TGSDDATCRLFD+RADQEL MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCN+WD+M
Sbjct: 241 FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAM 300

Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           K +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 301 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Rattus norvegicus (taxid: 10116)

>sp|P62880|GBB2_MOUSE Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Mus musculus GN=Gnb2 PE=1 SV=3

 Score =  619 bits (1595), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 291/340 (85%), Positives = 315/340 (92%)

Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           M+EL+ LRQEAE L+N IRDARKA  D++L   T  ++P+GRIQMRTRRTLRGHLAKIYA
Sbjct: 1   MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA 60

Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHWG+DSR LVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG+FVACGGLDNI
Sbjct: 61  MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI 120

Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQI+TSSGD +CALWDIETGQQ   F
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGF 180

Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
            GH+GDVMSLSLAPD RTFVSGACDAS KLWD+RD  C+QTF GHESDINAV FFPNG+A
Sbjct: 181 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 240

Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           F TGSDDATCRLFD+RADQEL MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCN+WD+M
Sbjct: 241 FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAM 300

Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           K +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 301 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Mus musculus (taxid: 10090)

>sp|P62879|GBB2_HUMAN Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Homo sapiens GN=GNB2 PE=1 SV=3

 Score =  619 bits (1595), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 291/340 (85%), Positives = 315/340 (92%)

Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           M+EL+ LRQEAE L+N IRDARKA  D++L   T  ++P+GRIQMRTRRTLRGHLAKIYA
Sbjct: 1   MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA 60

Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHWG+DSR LVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG+FVACGGLDNI
Sbjct: 61  MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI 120

Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQI+TSSGD +CALWDIETGQQ   F
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGF 180

Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
            GH+GDVMSLSLAPD RTFVSGACDAS KLWD+RD  C+QTF GHESDINAV FFPNG+A
Sbjct: 181 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 240

Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           F TGSDDATCRLFD+RADQEL MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCN+WD+M
Sbjct: 241 FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAM 300

Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           K +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 301 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Homo sapiens (taxid: 9606)

>sp|P11017|GBB2_BOVIN Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Bos taurus GN=GNB2 PE=2 SV=3

 Score =  619 bits (1595), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 291/340 (85%), Positives = 315/340 (92%)

Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           M+EL+ LRQEAE L+N IRDARKA  D++L   T  ++P+GRIQMRTRRTLRGHLAKIYA
Sbjct: 1   MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA 60

Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHWG+DSR LVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG+FVACGGLDNI
Sbjct: 61  MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI 120

Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQI+TSSGD +CALWDIETGQQ   F
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGF 180

Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
            GH+GDVMSLSLAPD RTFVSGACDAS KLWD+RD  C+QTF GHESDINAV FFPNG+A
Sbjct: 181 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 240

Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           F TGSDDATCRLFD+RADQEL MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCN+WD+M
Sbjct: 241 FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAM 300

Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           K +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 301 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
451774884	340	heterotrimeric guanine nucleotide-bindin	1.0	1.0	0.967	0.0
119888032	340	guanine nucleotide-binding protein subun	1.0	1.0	0.964	0.0
307180607	340	Guanine nucleotide-binding protein G(I)/	1.0	1.0	0.964	0.0
193596402	340	PREDICTED: guanine nucleotide-binding pr	1.0	1.0	0.955	0.0
91085467	340	PREDICTED: similar to guanine nucleotide	1.0	1.0	0.95	0.0
391344989	340	PREDICTED: guanine nucleotide-binding pr	1.0	1.0	0.941	0.0
241655455	340	THO complex subunit, putative [Ixodes sc	1.0	1.0	0.932	0.0
346468847	340	hypothetical protein [Amblyomma maculatu	1.0	1.0	0.932	0.0
340724580	340	PREDICTED: guanine nucleotide-binding pr	1.0	1.0	0.941	0.0
66523907	341	PREDICTED: guanine nucleotide-binding pr	0.997	0.994	0.943	0.0

>gi|451774884|gb|AGF50187.1| heterotrimeric guanine nucleotide-binding protein beta subunit [Bemisia tabaci]

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/340 (96%), Positives = 336/340 (98%)

Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           MNELDSLR EAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA
Sbjct: 1   MNELDSLRTEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60

Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGS+VACGGLDNI
Sbjct: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNI 120

Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIYSLKTREG VRVSRELPGHTGYLSCCRFL+D+QIVTSSGDMSCALWDIETGQQC SF
Sbjct: 121 CSIYSLKTREGTVRVSRELPGHTGYLSCCRFLNDDQIVTSSGDMSCALWDIETGQQCTSF 180

Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
           IGHTGDVMSLSLAPDM TFVSGACDASAKLWDIR+G+CKQTFPGHESDINAVTFFPNGWA
Sbjct: 181 IGHTGDVMSLSLAPDMHTFVSGACDASAKLWDIREGTCKQTFPGHESDINAVTFFPNGWA 240

Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           FATGSDDATCRLFDIR+DQELAMYSHDNIICGITSVAFS+SGRLLLAGYDDFNCNVWDSM
Sbjct: 241 FATGSDDATCRLFDIRSDQELAMYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDSM 300

Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN
Sbjct: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340

Source: Bemisia tabaci

Species: Bemisia tabaci

Genus: Bemisia

Family: Aleyrodidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119888032|gb|ABM05967.1| guanine nucleotide-binding protein subunit beta-like [Microplitis mediator]

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/340 (96%), Positives = 335/340 (98%)

Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           MNEL+SLRQEAETLKNAIRDARK ACDTSLV AT  MEPIGRIQMRTRRTLRGHLAKIYA
Sbjct: 1   MNELESLRQEAETLKNAIRDARKVACDTSLVQATAGMEPIGRIQMRTRRTLRGHLAKIYA 60

Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGS+VACGGLDNI
Sbjct: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNI 120

Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIYSLKTREGNVRVSRELPGHTGYLSCCRF+DDNQIVTSSGDMSCALWDIETGQQC SF
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFIDDNQIVTSSGDMSCALWDIETGQQCTSF 180

Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
           IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIR+GSCKQTFPGHESDINAVTFFPNG+A
Sbjct: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIREGSCKQTFPGHESDINAVTFFPNGYA 240

Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS+SGRLLLAGYDDFNCNVWDSM
Sbjct: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDSM 300

Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           K+ERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN
Sbjct: 301 KSERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340

Source: Microplitis mediator

Species: Microplitis mediator

Genus: Microplitis

Family: Braconidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180607|gb|EFN68562.1| Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 [Camponotus floridanus]

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/340 (96%), Positives = 333/340 (97%)

Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           MNELDSLRQEAETLKNAIRDARKAACDT+L  AT  MEPIGRIQMRTRRTLRGHLAKIYA
Sbjct: 1   MNELDSLRQEAETLKNAIRDARKAACDTTLAQATSGMEPIGRIQMRTRRTLRGHLAKIYA 60

Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGS+VACGGLDNI
Sbjct: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNI 120

Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIYSLKTREGNVRVSRELPGHTGYLSCCRF DDNQIVTSSGDMSCALWDIETGQQC SF
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFYDDNQIVTSSGDMSCALWDIETGQQCTSF 180

Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
           IGHTGDVMSLSLAPD RTFVSGACDASAKLWDIR+GSCKQTFPGHESDINAVTFFPNG+A
Sbjct: 181 IGHTGDVMSLSLAPDTRTFVSGACDASAKLWDIREGSCKQTFPGHESDINAVTFFPNGYA 240

Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS+SGRLLLAGYDDFNCNVWDSM
Sbjct: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDSM 300

Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN
Sbjct: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193596402|ref|XP_001947878.1| PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like [Acyrthosiphon pisum] gi|28849825|gb|AAO46882.1| heterotrimeric guanine nucleotide-binding protein beta subunit [Sitobion avenae]

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/340 (95%), Positives = 336/340 (98%)

Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           MNELDSLRQEAETLKNAIRDARKAACDTSL  AT +MEP+GRIQMRTRRTLRGHLAKIYA
Sbjct: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLSQATTSMEPVGRIQMRTRRTLRGHLAKIYA 60

Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI
Sbjct: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120

Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQC+SF
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCSSF 180

Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
           IGHTGDVMSLS++PDMRTFVSGACDASAKLWD+RDG+CKQTFPGHESDINAVTFFPNG+A
Sbjct: 181 IGHTGDVMSLSMSPDMRTFVSGACDASAKLWDVRDGTCKQTFPGHESDINAVTFFPNGYA 240

Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           FATGSDDATCRLFDIR+DQELAMYSHDNIICGITSV+FS+SGRLLLAGYDDFNCNVWDSM
Sbjct: 241 FATGSDDATCRLFDIRSDQELAMYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDSM 300

Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           K ERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN
Sbjct: 301 KAERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91085467|ref|XP_970131.1| PREDICTED: similar to guanine nucleotide-binding protein subunit beta-like [Tribolium castaneum] gi|270008384|gb|EFA04832.1| hypothetical protein TcasGA2_TC014882 [Tribolium castaneum]

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/340 (95%), Positives = 334/340 (98%)

Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           MNELDSLRQEAETLKNAIRDARKAACDTSLV AT ++EPIGR+QMRTRRTLRGHLAKIYA
Sbjct: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVQATASLEPIGRVQMRTRRTLRGHLAKIYA 60

Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHWGSDSRNLVSASQDGKLIVWDS+TTNKVHAIPLRSSWVMTCAYAPSGS+VACGGLDNI
Sbjct: 61  MHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNI 120

Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQ  SF
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQVTSF 180

Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
           +GHTGDVMSLSL+PDMRTFVSGACDASAKLWDIR+G CKQTFPGHESDINAVTFFPNG+A
Sbjct: 181 LGHTGDVMSLSLSPDMRTFVSGACDASAKLWDIREGLCKQTFPGHESDINAVTFFPNGFA 240

Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS+SGRLLLAGYDDFNCNVWDSM
Sbjct: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDSM 300

Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           KTERAGILAGHDNRVSCLGVTE+GMAV TGSWDSFLRIWN
Sbjct: 301 KTERAGILAGHDNRVSCLGVTENGMAVGTGSWDSFLRIWN 340

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391344989|ref|XP_003746776.1| PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like isoform 1 [Metaseiulus occidentalis]

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/340 (94%), Positives = 332/340 (97%)

Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           MNEL++LRQEAETLKN IRDARKAACDTSLV AT NMEP+GRIQMRTRRTLRGHLAKIYA
Sbjct: 1   MNELEALRQEAETLKNTIRDARKAACDTSLVQATANMEPVGRIQMRTRRTLRGHLAKIYA 60

Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHWGSDSR LVSASQDGKLIVWD+YTTNKVHAIPLRSSWVMTCAYAPSGS+VACGGLDNI
Sbjct: 61  MHWGSDSRYLVSASQDGKLIVWDAYTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNI 120

Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD QIVTSSGDM+CALWDIETGQQC SF
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDTQIVTSSGDMTCALWDIETGQQCTSF 180

Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
           +GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG CKQTFPGHESDINAVTFFPNG+A
Sbjct: 181 MGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGLCKQTFPGHESDINAVTFFPNGYA 240

Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           FATGSDDATCRLFD+RADQELA+YSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM
Sbjct: 241 FATGSDDATCRLFDLRADQELALYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300

Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           K ERAG+LAGHDNRVSCLGVTEDGMAVATGSWDSFL+IWN
Sbjct: 301 KAERAGVLAGHDNRVSCLGVTEDGMAVATGSWDSFLKIWN 340

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241655455|ref|XP_002411384.1| THO complex subunit, putative [Ixodes scapularis] gi|215504014|gb|EEC13508.1| THO complex subunit, putative [Ixodes scapularis]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/340 (93%), Positives = 331/340 (97%)

Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           MNELDSLRQEAETLKN IRDARKAACDT+LV AT NMEP+GRIQMRTRRTLRGHLAKIYA
Sbjct: 1   MNELDSLRQEAETLKNTIRDARKAACDTTLVQATANMEPVGRIQMRTRRTLRGHLAKIYA 60

Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHWGSDSR LVSASQDGKLIVWD+YTTNKVHAIPLRSSWVMTCAYAP+GS+VACGGLDNI
Sbjct: 61  MHWGSDSRYLVSASQDGKLIVWDAYTTNKVHAIPLRSSWVMTCAYAPTGSYVACGGLDNI 120

Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIYSLKTREGNVRVSRELPGHTGYLSCCRF+DDNQIVTSSGDM+CALWDIETGQQC SF
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFVDDNQIVTSSGDMTCALWDIETGQQCTSF 180

Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
            GHTGDVMSLSL+PD RTFVSGACDASAKLWD+RDG CKQTFPGHESDINAVTFFPNG+A
Sbjct: 181 TGHTGDVMSLSLSPDFRTFVSGACDASAKLWDVRDGMCKQTFPGHESDINAVTFFPNGYA 240

Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           FATGSDDATCRLFD+RADQELAMYSHDNIICGITSVAFS+SGRLLLAGYDDFNCNVWDSM
Sbjct: 241 FATGSDDATCRLFDMRADQELAMYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDSM 300

Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           K ERAG+LAGHDNRVSCLGVTEDGMAVATGSWDSFL+IWN
Sbjct: 301 KAERAGVLAGHDNRVSCLGVTEDGMAVATGSWDSFLKIWN 340

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346468847|gb|AEO34268.1| hypothetical protein [Amblyomma maculatum]

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/340 (93%), Positives = 332/340 (97%)

Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           MNE++SLRQEAETLKN IRDARKAACDT+LV AT NMEP+GRIQMRTRRTLRGHLAKIYA
Sbjct: 1   MNEVESLRQEAETLKNTIRDARKAACDTTLVQATANMEPVGRIQMRTRRTLRGHLAKIYA 60

Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHWGSDSR LVSASQDGKLIVWD+YTTNKVHAIPLRSSWVMTCAYAPSGS+VACGGLDNI
Sbjct: 61  MHWGSDSRYLVSASQDGKLIVWDAYTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNI 120

Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIYSLKTREGNVRVSRELPGHTGYLSCCRF+DD+QIVTSSGDM+CALWDIETGQQC SF
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFVDDSQIVTSSGDMTCALWDIETGQQCTSF 180

Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
            GHTGDVMSLSL+PDMRTFVSGACDASAKLWD+RDG CKQTFPGHESDINAVTFFPNG+A
Sbjct: 181 TGHTGDVMSLSLSPDMRTFVSGACDASAKLWDVRDGMCKQTFPGHESDINAVTFFPNGYA 240

Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS+SGRLLLAGYDDFNCNVWDSM
Sbjct: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDSM 300

Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           K ERAG+LAGHDNRVSCLGVTEDGMAVATGSWDSFL+IWN
Sbjct: 301 KAERAGVLAGHDNRVSCLGVTEDGMAVATGSWDSFLKIWN 340

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724580|ref|XP_003400659.1| PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like [Bombus terrestris] gi|350397873|ref|XP_003485017.1| PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like [Bombus impatiens]

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/340 (94%), Positives = 331/340 (97%)

Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           M+E+++LRQEA+ LKNAIRDARKAACDT+LV AT  MEPIGRIQMRTRRTLRGHLAKIYA
Sbjct: 1   MSEVETLRQEADKLKNAIRDARKAACDTTLVQATSGMEPIGRIQMRTRRTLRGHLAKIYA 60

Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI
Sbjct: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120

Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIYSLKTREGNVRVSRELPGHTGYLSCCRF DD+QIVTSSGDM+CALWDIETGQQC SF
Sbjct: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFYDDSQIVTSSGDMTCALWDIETGQQCTSF 180

Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
           IGHTGDVMSLSLAPD RTFVSGACDASAKLWDIR+GSCKQTFPGHESDINAVTFFPNG+A
Sbjct: 181 IGHTGDVMSLSLAPDTRTFVSGACDASAKLWDIREGSCKQTFPGHESDINAVTFFPNGYA 240

Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS+SGRLLLAGYDDFNCNVWDSM
Sbjct: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDSM 300

Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           K ERAGILAGHDNRVSCLGVTEDGMAV TGSWDSFLRIWN
Sbjct: 301 KAERAGILAGHDNRVSCLGVTEDGMAVGTGSWDSFLRIWN 340

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66523907|ref|XP_393976.2| PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like isoform 1 [Apis mellifera]

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/339 (94%), Positives = 330/339 (97%)

Query: 2   NELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAM 61
           +EL+SLRQE++ LKNAIRDARKAACDT+LV AT  MEPIGRIQMRTRRTLRGHLAKIYAM
Sbjct: 3   SELESLRQESDKLKNAIRDARKAACDTTLVQATSGMEPIGRIQMRTRRTLRGHLAKIYAM 62

Query: 62  HWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNIC 121
           HWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNIC
Sbjct: 63  HWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNIC 122

Query: 122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFI 181
           SIYSLKTREGNVRVSRELPGHTGYLSCCRF DDNQIVTSSGDM+CALWDIETGQQC SFI
Sbjct: 123 SIYSLKTREGNVRVSRELPGHTGYLSCCRFYDDNQIVTSSGDMTCALWDIETGQQCTSFI 182

Query: 182 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 241
           GHTGDVMSLSLAPD RTFVSGACDASAKLWDIR+G+CKQTFPGHESDINAVTFFPNG+AF
Sbjct: 183 GHTGDVMSLSLAPDTRTFVSGACDASAKLWDIREGTCKQTFPGHESDINAVTFFPNGYAF 242

Query: 242 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 301
           ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS+SGRLLLAGYDDFNCNVWDSMK
Sbjct: 243 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDSMK 302

Query: 302 TERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
            ERAGILAGHDNRVSCLGVTEDGMAV TGSWDSFLRIWN
Sbjct: 303 AERAGILAGHDNRVSCLGVTEDGMAVGTGSWDSFLRIWN 341

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
FB|FBgn0001105	340	Gbeta13F "G protein beta-subun	1.0	1.0	0.908	4.9e-172
WB|WBGene00001679	340	gpb-1 [Caenorhabditis elegans	1.0	1.0	0.902	2.7e-171
ZFIN|ZDB-GENE-040426-2855	340	gnb1b "guanine nucleotide bind	1.0	1.0	0.861	2.7e-164
UNIPROTKB|P11017	340	GNB2 "Guanine nucleotide-bindi	1.0	1.0	0.855	4.3e-164
UNIPROTKB|E2RD95	340	GNB2 "Uncharacterized protein"	1.0	1.0	0.855	4.3e-164
UNIPROTKB|P62879	340	GNB2 "Guanine nucleotide-bindi	1.0	1.0	0.855	4.3e-164
MGI|MGI:95784	340	Gnb2 "guanine nucleotide bindi	1.0	1.0	0.855	4.3e-164
RGD|69319	340	Gnb2 "guanine nucleotide bindi	1.0	1.0	0.855	4.3e-164
ZFIN|ZDB-GENE-030131-823	340	gnb1a "guanine nucleotide bind	1.0	1.0	0.855	7.1e-164
UNIPROTKB|P62871	340	GNB1 "Guanine nucleotide-bindi	1.0	1.0	0.852	2.4e-163

FB|FBgn0001105 Gbeta13F "G protein beta-subunit 13F" [Drosophila melanogaster (taxid:7227)]

 Score = 1672 (593.6 bits), Expect = 4.9e-172, P = 4.9e-172
 Identities = 309/340 (90%), Positives = 327/340 (96%)

Query:     1 MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
             MNELDSLRQEAE+LKNAIRDARKAACDTSL+ A  ++EPIGRIQMRTRRTLRGHLAKIYA
Sbjct:     1 MNELDSLRQEAESLKNAIRDARKAACDTSLLQAATSLEPIGRIQMRTRRTLRGHLAKIYA 60

Query:    61 MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
             MHWG+DSRNLVSASQDGKLIVWDS+TTNKVHAIPLRSSWVMTCAYAPSGS+VACGGLDN+
Sbjct:    61 MHWGNDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNM 120

Query:   121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
             CSIY+LKTREGNVRVSRELPGH GYLSCCRFLDDNQIVTSSGDMSC LWDIETG Q  SF
Sbjct:   121 CSIYNLKTREGNVRVSRELPGHGGYLSCCRFLDDNQIVTSSGDMSCGLWDIETGLQVTSF 180

Query:   181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
             +GHTGDVM+LSLAP  +TFVSGACDASAKLWDIR+G CKQTFPGHESDINAVTFFPNG A
Sbjct:   181 LGHTGDVMALSLAPQCKTFVSGACDASAKLWDIREGVCKQTFPGHESDINAVTFFPNGQA 240

Query:   241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
             FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS+SGRLLLAGYDDFNCNVWD+M
Sbjct:   241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTM 300

Query:   301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
             K ER+GILAGHDNRVSCLGVTE+GMAVATGSWDSFLR+WN
Sbjct:   301 KAERSGILAGHDNRVSCLGVTENGMAVATGSWDSFLRVWN 340

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS;NAS

GO:0003924 "GTPase activity" evidence=ISS;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS;NAS

GO:0055059 "asymmetric neuroblast division" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

GO:0045176 "apical protein localization" evidence=TAS

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

WB|WBGene00001679 gpb-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 1665 (591.2 bits), Expect = 2.7e-171, P = 2.7e-171
 Identities = 307/340 (90%), Positives = 322/340 (94%)

Query:     1 MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
             M+ELD LRQEAE LK+ IR+ARK+A DT+L T   N+EPIGRIQMRTRRTLRGHLAKIYA
Sbjct:     1 MSELDQLRQEAEQLKSQIREARKSANDTTLATVASNLEPIGRIQMRTRRTLRGHLAKIYA 60

Query:    61 MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
             MHW SDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI
Sbjct:    61 MHWASDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120

Query:   121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
             CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDM+CALWDIETGQQC +F
Sbjct:   121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMTCALWDIETGQQCTAF 180

Query:   181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
              GHTGDVMSLSL+PD RTF+SGACDASAKLWDIRDG CKQTFPGHESDINAV FFP+G A
Sbjct:   181 TGHTGDVMSLSLSPDFRTFISGACDASAKLWDIRDGMCKQTFPGHESDINAVAFFPSGNA 240

Query:   241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
             FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS+SGRLL AGYDDFNCNVWDSM
Sbjct:   241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGRLLFAGYDDFNCNVWDSM 300

Query:   301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
             + ERAG+LAGHDNRVSCLGVTEDGMAV TGSWDSFL+IWN
Sbjct:   301 RQERAGVLAGHDNRVSCLGVTEDGMAVCTGSWDSFLKIWN 340

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0035046 "pronuclear migration" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0040013 "negative regulation of locomotion" evidence=IMP

GO:0046662 "regulation of oviposition" evidence=IMP

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

ZFIN|ZDB-GENE-040426-2855 gnb1b "guanine nucleotide binding protein (G protein), beta polypeptide 1b" [Danio rerio (taxid:7955)]

 Score = 1599 (567.9 bits), Expect = 2.7e-164, P = 2.7e-164
 Identities = 293/340 (86%), Positives = 316/340 (92%)

Query:     1 MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
             M+ELD LRQEAE LKN IRDARKA  D +L   T N++P+GRIQMRTRRTLRGHLAKIYA
Sbjct:     1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITANIDPVGRIQMRTRRTLRGHLAKIYA 60

Query:    61 MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
             MHWG+DSR LVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG++VACGGLDNI
Sbjct:    61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120

Query:   121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
             CSIYSLKTREGNVRVSREL GHTGYLSCCRFLDDNQIVTSSGD +CALWDIETGQQ  +F
Sbjct:   121 CSIYSLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180

Query:   181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
              GHTGDVMSLSLAPD R FVSGACDASAKLWDIR+G C+QTF GHESDINA+ FFPNG A
Sbjct:   181 AGHTGDVMSLSLAPDTRLFVSGACDASAKLWDIREGMCRQTFTGHESDINAICFFPNGNA 240

Query:   241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
             FATGSDDATCRLFD+RADQEL +YSHDNIICGITSVAFS+SGRLLLAGYDDFNCNVWD++
Sbjct:   241 FATGSDDATCRLFDLRADQELMVYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTL 300

Query:   301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
             K +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct:   301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P11017 GNB2 "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2" [Bos taurus (taxid:9913)]

 Score = 1597 (567.2 bits), Expect = 4.3e-164, P = 4.3e-164
 Identities = 291/340 (85%), Positives = 315/340 (92%)

Query:     1 MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
             M+EL+ LRQEAE L+N IRDARKA  D++L   T  ++P+GRIQMRTRRTLRGHLAKIYA
Sbjct:     1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA 60

Query:    61 MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
             MHWG+DSR LVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG+FVACGGLDNI
Sbjct:    61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI 120

Query:   121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
             CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQI+TSSGD +CALWDIETGQQ   F
Sbjct:   121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGF 180

Query:   181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
              GH+GDVMSLSLAPD RTFVSGACDAS KLWD+RD  C+QTF GHESDINAV FFPNG+A
Sbjct:   181 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 240

Query:   241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
             F TGSDDATCRLFD+RADQEL MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCN+WD+M
Sbjct:   241 FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAM 300

Query:   301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
             K +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct:   301 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

GO:0006184 "GTP catabolic process" evidence=IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0051020 "GTPase binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|E2RD95 GNB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1597 (567.2 bits), Expect = 4.3e-164, P = 4.3e-164
 Identities = 291/340 (85%), Positives = 315/340 (92%)

Query:     1 MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
             M+EL+ LRQEAE L+N IRDARKA  D++L   T  ++P+GRIQMRTRRTLRGHLAKIYA
Sbjct:     1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA 60

Query:    61 MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
             MHWG+DSR LVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG+FVACGGLDNI
Sbjct:    61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI 120

Query:   121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
             CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQI+TSSGD +CALWDIETGQQ   F
Sbjct:   121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGF 180

Query:   181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
              GH+GDVMSLSLAPD RTFVSGACDAS KLWD+RD  C+QTF GHESDINAV FFPNG+A
Sbjct:   181 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 240

Query:   241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
             F TGSDDATCRLFD+RADQEL MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCN+WD+M
Sbjct:   241 FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAM 300

Query:   301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
             K +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct:   301 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

GO:0051020 "GTPase binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|P62879 GNB2 "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2" [Homo sapiens (taxid:9606)]

 Score = 1597 (567.2 bits), Expect = 4.3e-164, P = 4.3e-164
 Identities = 291/340 (85%), Positives = 315/340 (92%)

Query:     1 MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
             M+EL+ LRQEAE L+N IRDARKA  D++L   T  ++P+GRIQMRTRRTLRGHLAKIYA
Sbjct:     1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA 60

Query:    61 MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
             MHWG+DSR LVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG+FVACGGLDNI
Sbjct:    61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI 120

Query:   121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
             CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQI+TSSGD +CALWDIETGQQ   F
Sbjct:   121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGF 180

Query:   181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
              GH+GDVMSLSLAPD RTFVSGACDAS KLWD+RD  C+QTF GHESDINAV FFPNG+A
Sbjct:   181 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 240

Query:   241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
             F TGSDDATCRLFD+RADQEL MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCN+WD+M
Sbjct:   241 FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAM 300

Query:   301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
             K +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct:   301 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005246 "calcium channel regulator activity" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0044297 "cell body" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0051020 "GTPase binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=TAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0071377 "cellular response to glucagon stimulus" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=TAS

MGI|MGI:95784 Gnb2 "guanine nucleotide binding protein (G protein), beta 2" [Mus musculus (taxid:10090)]

 Score = 1597 (567.2 bits), Expect = 4.3e-164, P = 4.3e-164
 Identities = 291/340 (85%), Positives = 315/340 (92%)

Query:     1 MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
             M+EL+ LRQEAE L+N IRDARKA  D++L   T  ++P+GRIQMRTRRTLRGHLAKIYA
Sbjct:     1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA 60

Query:    61 MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
             MHWG+DSR LVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG+FVACGGLDNI
Sbjct:    61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI 120

Query:   121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
             CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQI+TSSGD +CALWDIETGQQ   F
Sbjct:   121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGF 180

Query:   181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
              GH+GDVMSLSLAPD RTFVSGACDAS KLWD+RD  C+QTF GHESDINAV FFPNG+A
Sbjct:   181 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 240

Query:   241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
             F TGSDDATCRLFD+RADQEL MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCN+WD+M
Sbjct:   241 FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAM 300

Query:   301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
             K +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct:   301 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

GO:0003924 "GTPase activity" evidence=ISA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005246 "calcium channel regulator activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISA

GO:0006184 "GTP catabolic process" evidence=ISA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0043234 "protein complex" evidence=ISO

GO:0044297 "cell body" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0051020 "GTPase binding" evidence=ISO

RGD|69319 Gnb2 "guanine nucleotide binding protein (G protein), beta polypeptide 2" [Rattus norvegicus (taxid:10116)]

 Score = 1597 (567.2 bits), Expect = 4.3e-164, P = 4.3e-164
 Identities = 291/340 (85%), Positives = 315/340 (92%)

Query:     1 MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
             M+EL+ LRQEAE L+N IRDARKA  D++L   T  ++P+GRIQMRTRRTLRGHLAKIYA
Sbjct:     1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA 60

Query:    61 MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
             MHWG+DSR LVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG+FVACGGLDNI
Sbjct:    61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI 120

Query:   121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
             CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQI+TSSGD +CALWDIETGQQ   F
Sbjct:   121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGF 180

Query:   181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
              GH+GDVMSLSLAPD RTFVSGACDAS KLWD+RD  C+QTF GHESDINAV FFPNG+A
Sbjct:   181 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 240

Query:   241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
             F TGSDDATCRLFD+RADQEL MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCN+WD+M
Sbjct:   241 FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAM 300

Query:   301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
             K +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct:   301 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005246 "calcium channel regulator activity" evidence=IMP

GO:0043234 "protein complex" evidence=IDA

GO:0044297 "cell body" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS

GO:0051020 "GTPase binding" evidence=IEA;ISO

ZFIN|ZDB-GENE-030131-823 gnb1a "guanine nucleotide binding protein (G protein), beta polypeptide 1a" [Danio rerio (taxid:7955)]

 Score = 1595 (566.5 bits), Expect = 7.1e-164, P = 7.1e-164
 Identities = 291/340 (85%), Positives = 316/340 (92%)

Query:     1 MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
             M+ELD LRQEAE LKN IRDARKA  D +L   T N++P+GRIQMRTRRTLRGHLAKIYA
Sbjct:     1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITANIDPVGRIQMRTRRTLRGHLAKIYA 60

Query:    61 MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
             MHWG+DSR LVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG++VACGGLDNI
Sbjct:    61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120

Query:   121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
             CSIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQIVTSSGD +CALWDIETGQQ  +F
Sbjct:   121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180

Query:   181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
              GHTGDVMSLSLAPD R FVSGACDASAKLWD+R+G C+QTF GHESDINA+ FFPNG A
Sbjct:   181 AGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240

Query:   241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
             FATGSDDATCRLFD+RADQEL +YSHDNIICGITSVAFS+SGRLLLAGYDDFNCNVWD++
Sbjct:   241 FATGSDDATCRLFDLRADQELMVYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDAL 300

Query:   301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
             K +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct:   301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|P62871 GNB1 "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1" [Bos taurus (taxid:9913)]

 Score = 1590 (564.8 bits), Expect = 2.4e-163, P = 2.4e-163
 Identities = 290/340 (85%), Positives = 315/340 (92%)

Query:     1 MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
             M+ELD LRQEAE LKN IRDARKA  D +L   T N++P+GRIQMRTRRTLRGHLAKIYA
Sbjct:     1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60

Query:    61 MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
             MHWG+DSR LVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG++VACGGLDNI
Sbjct:    61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120

Query:   121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
             CSIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQIVTSSGD +CALWDIETGQQ  +F
Sbjct:   121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180

Query:   181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
              GHTGDVMSLSLAPD R FVSGACDASAKLWD+R+G C+QTF GHESDINA+ FFPNG A
Sbjct:   181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240

Query:   241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
             FATGSDDATCRLFD+RADQEL  YSHDNIICGITSV+FS+SGRLLLAGYDDFNCNVWD++
Sbjct:   241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300

Query:   301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
             K +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct:   301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

GO:0071380 "cellular response to prostaglandin E stimulus" evidence=IDA

GO:0071870 "cellular response to catecholamine stimulus" evidence=IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=IDA

GO:0005622 "intracellular" evidence=IDA

GO:0007191 "adenylate cyclase-activating dopamine receptor signaling pathway" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0051020 "GTPase binding" evidence=IEA

GO:0050909 "sensory perception of taste" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6PNB6	GBB5_RABIT	No assigned EC number	0.5395	0.9882	0.9518	no	N/A
P62879	GBB2_HUMAN	No assigned EC number	0.8558	1.0	1.0	yes	N/A
P29387	GBB4_MOUSE	No assigned EC number	0.8323	1.0	1.0	no	N/A
P62873	GBB1_HUMAN	No assigned EC number	0.8529	1.0	1.0	no	N/A
P62872	GBB1_CANFA	No assigned EC number	0.8529	1.0	1.0	no	N/A
P62871	GBB1_BOVIN	No assigned EC number	0.8529	1.0	1.0	no	N/A
Q5RDY7	GBB5_PONAB	No assigned EC number	0.5395	0.9882	0.9518	no	N/A
P62874	GBB1_MOUSE	No assigned EC number	0.8529	1.0	1.0	no	N/A
P54313	GBB2_RAT	No assigned EC number	0.8558	1.0	1.0	yes	N/A
P54311	GBB1_RAT	No assigned EC number	0.8529	1.0	1.0	no	N/A
P17343	GBB1_CAEEL	No assigned EC number	0.9029	1.0	1.0	yes	N/A
Q08706	GBB_LYMST	No assigned EC number	0.8613	0.9970	0.9941	N/A	N/A
O14775	GBB5_HUMAN	No assigned EC number	0.5395	0.9882	0.8506	no	N/A
Q40687	GBB_ORYSJ	No assigned EC number	0.5064	0.8558	0.7657	yes	N/A
Q10282	GBB_SCHPO	No assigned EC number	0.4233	0.8647	0.9639	yes	N/A
Q5GIS3	GBB_PINFU	No assigned EC number	0.8879	0.9970	0.9941	N/A	N/A
Q6PH57	GBB1_DANRE	No assigned EC number	0.8558	1.0	1.0	yes	N/A
P79147	GBB3_CANFA	No assigned EC number	0.7852	1.0	1.0	no	N/A
P16520	GBB3_HUMAN	No assigned EC number	0.7882	1.0	1.0	no	N/A
P11017	GBB2_BOVIN	No assigned EC number	0.8558	1.0	1.0	yes	N/A
Q61011	GBB3_MOUSE	No assigned EC number	0.7823	1.0	1.0	no	N/A
P18851	GBB_YEAST	No assigned EC number	0.3558	0.9852	0.7919	yes	N/A
Q61ZF6	GBB1_CAEBR	No assigned EC number	0.9029	1.0	1.0	N/A	N/A
P49177	GBB_ARATH	No assigned EC number	0.5032	0.8558	0.7718	yes	N/A
O45040	GBB1_HOMAM	No assigned EC number	0.9205	1.0	1.0	N/A	N/A
Q80ZD0	GBB5_TAMST	No assigned EC number	0.5395	0.9882	0.9518	N/A	N/A
P52287	GBB3_RAT	No assigned EC number	0.7823	1.0	1.0	no	N/A
O35353	GBB4_RAT	No assigned EC number	0.8352	1.0	1.0	no	N/A
O14435	GBB_CRYPA	No assigned EC number	0.6676	0.9882	0.9359	N/A	N/A
P62882	GBB5_RAT	No assigned EC number	0.5366	0.9882	0.9518	no	N/A
P62880	GBB2_MOUSE	No assigned EC number	0.8558	1.0	1.0	yes	N/A
Q5R5W8	GBB1_PONAB	No assigned EC number	0.85	1.0	1.0	yes	N/A
P62881	GBB5_MOUSE	No assigned EC number	0.5366	0.9882	0.8506	no	N/A
P23232	GBB_LOLFO	No assigned EC number	0.8820	0.9970	0.9941	N/A	N/A
Q9HAV0	GBB4_HUMAN	No assigned EC number	0.8470	1.0	1.0	no	N/A
Q6TMK6	GBB1_CRIGR	No assigned EC number	0.8470	1.0	1.0	no	N/A
P26308	GBB1_DROME	No assigned EC number	0.9088	1.0	1.0	yes	N/A
P79959	GBB1_XENLA	No assigned EC number	0.85	1.0	1.0	N/A	N/A
P36408	GBB_DICDI	No assigned EC number	0.6578	0.9911	0.9711	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	340
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-88
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-46
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-43
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-38
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-34
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-25
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-15
smart00320	40	smart00320, WD40, WD40 repeats	3e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	3e-05
smart00320	40	smart00320, WD40, WD40 repeats	4e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	6e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-04
smart00320	40	smart00320, WD40, WD40 repeats	6e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  265 bits (680), Expect = 5e-88
 Identities = 110/301 (36%), Positives = 160/301 (53%), Gaps = 21/301 (6%)

Query: 48  RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYT-----TNKVHAIPLRSSWVMT 102
           RRTL+GH   +  + +  D + L + S DG + VWD  T     T K H  P+R   V  
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVR--DVAA 59

Query: 103 CAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSG 162
            A    G+++A G  D    ++ L+T E      R L GHT Y+S   F  D +I++SS 
Sbjct: 60  SAD---GTYLASGSSDKTIRLWDLETGE----CVRTLTGHTSYVSSVAFSPDGRILSSSS 112

Query: 163 -DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC-DASAKLWDIRDGSCKQ 220
            D +  +WD+ETG+   +  GHT  V S++ +PD  TFV+ +  D + KLWD+R G C  
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVA 171

Query: 221 TFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMY-SHDNIICGITSVAFS 279
           T  GH  ++N+V F P+G    + S D T +L+D+   + L     H+N +    SVAFS
Sbjct: 172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN---SVAFS 228

Query: 280 RSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 339
             G LL +G +D    VWD    E    L+GH N V+ L  + DG  +A+GS D  +RIW
Sbjct: 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288

Query: 340 N 340
           +
Sbjct: 289 D 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  159 bits (404), Expect = 1e-46
 Identities = 68/210 (32%), Positives = 114/210 (54%), Gaps = 5/210 (2%)

Query: 46  RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAY 105
              RTL GH + + ++ +  D R L S+S+D  + VWD  T   +  +   + WV + A+
Sbjct: 84  ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143

Query: 106 APSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDM 164
           +P G+FVA    D    ++ L+T     +    L GHTG ++   F  D  ++++SS D 
Sbjct: 144 SPDGTFVASSSQDGTIKLWDLRTG----KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG 199

Query: 165 SCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG 224
           +  LWD+ TG+   +  GH   V S++ +PD     SG+ D + ++WD+R G C QT  G
Sbjct: 200 TIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG 259

Query: 225 HESDINAVTFFPNGWAFATGSDDATCRLFD 254
           H + + ++ + P+G   A+GS D T R++D
Sbjct: 260 HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  154 bits (390), Expect = 4e-43
 Identities = 86/298 (28%), Positives = 150/298 (50%), Gaps = 12/298 (4%)

Query: 49  RTLRGHLAKIYAMHWGSDSRNLVSASQ-DGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
           RTL GH   + ++ +  D + L S S  DG + +WD  T   +  +   +  V + A++P
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP 208

Query: 108 SGSF-VACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSC 166
            G   +A G  D    ++ L T +    +   L GH+  +      D + + + S D + 
Sbjct: 209 DGGLLIASGSSDGTIRLWDLSTGK---LLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTI 265

Query: 167 ALWDIETGQQC-ASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQ--TFP 223
            LWD+ +      +  GH+  V+S++ +PD +   SG+ D + +LWD+  G      T  
Sbjct: 266 RLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325

Query: 224 GHESDINAVTFFPNGWAFATG-SDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSG 282
           GHE  +++++F P+G    +G SDD T RL+D+R  + L      +    + SV+FS  G
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS---NVLSVSFSPDG 382

Query: 283 RLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           R++ +G  D    +WD         L GH +RV+ L  + DG ++A+GS D+ +R+W+
Sbjct: 383 RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  141 bits (356), Expect = 3e-38
 Identities = 90/329 (27%), Positives = 152/329 (46%), Gaps = 21/329 (6%)

Query: 26  CDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD-S 84
            ++ ++      + +  +   +   LRGH   I ++ +  D   L+S S DG + +WD  
Sbjct: 36  SESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLD 95

Query: 85  YTTNKVHAIPLRSSWVMTCAYAPSGS----FVACGGLDNICSIYSLKTREGNVRVSRELP 140
                + ++       ++     S       +A   LD    ++ L       ++ R L 
Sbjct: 96  NGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDL---STPGKLIRTLE 152

Query: 141 GHTGYLSCCRFLDDNQ--IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR- 197
           GH+  ++   F  D +     SS D +  LWD+ TG+  ++  GHT  V SL+ +PD   
Sbjct: 153 GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL 212

Query: 198 TFVSGACDASAKLWDIRDGSCKQ-TFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIR 256
              SG+ D + +LWD+  G   + T  GH   + +  F P+G   A+GS D T RL+D+R
Sbjct: 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLR 271

Query: 257 ADQEL--AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD--SMKTERAGILAGHD 312
           +   L   +  H +    + SVAFS  G+LL +G  D    +WD  + K   +  L GH+
Sbjct: 272 SSSSLLRTLSGHSS---SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE 328

Query: 313 NRVSCLGVTEDGMAVATG-SWDSFLRIWN 340
             VS L  + DG  + +G S D  +R+W+
Sbjct: 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  131 bits (330), Expect = 1e-34
 Identities = 89/297 (29%), Positives = 142/297 (47%), Gaps = 16/297 (5%)

Query: 54  HLAKIYAMHWGSDSRNLVSASQ---DGKLIVWDSYTTNK-VHAIPLRSSWVMTCAYAPSG 109
           H + +  +   S   N +  +    DG + +WD  T  K +  +   S  V + A++P G
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG 167

Query: 110 S-FVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ--IVTSSGDMSC 166
               +   LD    ++ L+T +        L GHT  +S   F  D    I + S D + 
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGK----PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223

Query: 167 ALWDIETGQQCAS-FIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIR-DGSCKQTFPG 224
            LWD+ TG+   S   GH+  V+S S +PD     SG+ D + +LWD+R   S  +T  G
Sbjct: 224 RLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282

Query: 225 HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSG-R 283
           H S + +V F P+G   A+GS D T RL+D+   + L+  +       ++S++FS  G  
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342

Query: 284 LLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           L+  G DD    +WD    +    L GH N V  +  + DG  V++GS D  +R+W+
Sbjct: 343 LVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWD 398

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  104 bits (258), Expect = 8e-25
 Identities = 69/212 (32%), Positives = 111/212 (52%), Gaps = 7/212 (3%)

Query: 48  RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAI-PLRSSWVMTCAYA 106
           R TL GH   +    +  D   L S S DG + +WD  +++ +       SS V++ A++
Sbjct: 235 RSTLSGHSDSVV-SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293

Query: 107 PSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSG--DM 164
           P G  +A G  D    ++ L+T  G +  S  L GH G +S   F  D  ++ S G  D 
Sbjct: 294 PDGKLLASGSSDGTVRLWDLET--GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDG 351

Query: 165 SCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG 224
           +  LWD+ TG+     +    +V+S+S +PD R   SG+ D + +LWD+  GS  +   G
Sbjct: 352 TIRLWDLRTGK-PLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410

Query: 225 HESDINAVTFFPNGWAFATGSDDATCRLFDIR 256
           H S + ++ F P+G + A+GS D T RL+D++
Sbjct: 411 HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 85.8 bits (213), Expect = 4e-19
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 4/124 (3%)

Query: 218 CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELA-MYSHDNIICGITSV 276
            ++T  GH   +  V F P+G   ATGS D T +++D+   + L  +  H      +  V
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG---PVRDV 57

Query: 277 AFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFL 336
           A S  G  L +G  D    +WD    E    L GH + VS +  + DG  +++ S D  +
Sbjct: 58  AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTI 117

Query: 337 RIWN 340
           ++W+
Sbjct: 118 KVWD 121

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 85.9 bits (211), Expect = 1e-18
 Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 7/177 (3%)

Query: 49  RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRS--SWVMTCAYA 106
           RTL GH + + ++ +  D + L S S DG + +WD  T   + ++ L+     V + +++
Sbjct: 278 RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFS 337

Query: 107 PSGSFVACGG-LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMS 165
           P GS +  GG  D    ++ L+T     +  + L GH+  LS     D   + + S D +
Sbjct: 338 PDGSLLVSGGSDDGTIRLWDLRTG----KPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGT 393

Query: 166 CALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTF 222
             LWD+ TG    +  GHT  V SL  +PD ++  SG+ D + +LWD++      +F
Sbjct: 394 VRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 5/127 (3%)

Query: 45  MRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCA 104
            +   TL GH  ++ ++ +  D   L+S+S DG + +WD  T   +  +    + V + A
Sbjct: 167 GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA 226

Query: 105 YAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGD 163
           ++P G  +A G  D    ++ L+T E      + L GHT  ++   +  D  ++ + S D
Sbjct: 227 FSPDGYLLASGSEDGTIRVWDLRTGE----CVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282

Query: 164 MSCALWD 170
            +  +WD
Sbjct: 283 GTIRIWD 289

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 215 DGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFD 254
            G   +T  GH   + +V F P+G   A+GSDD T +L+D
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.4 bits (108), Expect = 5e-07
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 216 GSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFD 254
           G   +T  GH   + +V F P+G   A+GSDD T R++D
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.2 bits (108), Expect = 1e-05
 Identities = 22/88 (25%), Positives = 42/88 (47%)

Query: 51  LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGS 110
                + + ++ +  D R + S S DG + +WD  T + +  +   +S V +  ++P G 
Sbjct: 366 TLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGK 425

Query: 111 FVACGGLDNICSIYSLKTREGNVRVSRE 138
            +A G  DN   ++ LKT   +V  S +
Sbjct: 426 SLASGSSDNTIRLWDLKTSLKSVSFSPD 453

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 83
          +TL+GH   + ++ +  D + L S S DG + +WD
Sbjct: 6  KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 174 GQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWD 212
           G+   +  GHTG V S++ +PD     SG+ D + ++WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 39/173 (22%), Positives = 61/173 (35%), Gaps = 29/173 (16%)

Query: 153 DDNQIVTSSGDMSCALWDIET---GQQCASFI----GHTGDVMSLSLAPD-MRTFVSGAC 204
           D  ++ T+S D +   W I      Q  +  I    GHT  V  +S  P  M    S   
Sbjct: 87  DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA 146

Query: 205 DASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMY 264
           D    +WD+  G   +    H   I ++ +  +G    T S D    + D R        
Sbjct: 147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR-------- 198

Query: 265 SHDNIICGITSVAFSRSGRLLLAGYDD----FNCN--------VWDSMKTERA 305
               I+  + + A ++S R L A   D      C+        +WD+ K    
Sbjct: 199 -DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP 250

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 173 TGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWD 212
           +G+   +  GHTG V S++ +PD +   SG+ D + KLWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 83
          RTL+GH   + ++ +  D   L S S DG + VWD
Sbjct: 5  RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 18/155 (11%)

Query: 40  IGRIQMRTRRTLRGHLAKIYAMHWGS-DSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSS 98
           + R Q+ T   ++ H  +++++ + S D   L S S DG + +W       +  I  +++
Sbjct: 562 VARSQLVTE--MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN 619

Query: 99  WVMTCAYAPS--GSFVACGGLDNICSIYSLKTREGNVRVSR-ELPGHTGYLSCCRFLDDN 155
             + C   PS  G  +A G  D+    Y L+    N ++    + GH+  +S  RF+D +
Sbjct: 620 --ICCVQFPSESGRSLAFGSADHKVYYYDLR----NPKLPLCTMIGHSKTVSYVRFVDSS 673

Query: 156 QIVTSSGDMSCALWDIETG------QQCASFIGHT 184
            +V+SS D +  LWD+             SF+GHT
Sbjct: 674 TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT 708

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 306 GILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
             L GH   V+ +  + DG  +A+GS D  +R+W+
Sbjct: 5   RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.5 bits (85), Expect = 6e-04
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 307 ILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
            L GH   V+ +  + DG  +A+GS D  +++W+
Sbjct: 7   TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.3 bits (79), Expect = 0.004
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 137 RELPGHTGYLSCCRFL-DDNQIVTSSGDMSCALWD 170
           R L GHTG ++   F  D N + + S D +  +WD
Sbjct: 5   RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
KOG0286|consensus	343		100.0
KOG0271|consensus	480		100.0
KOG0272|consensus	459		100.0
KOG0279|consensus	315		100.0
KOG0315|consensus	311		100.0
KOG0295|consensus	406		100.0
KOG0272|consensus	459		100.0
KOG0265|consensus	338		100.0
KOG0271|consensus	480		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0284|consensus	464		100.0
KOG0293|consensus	519		100.0
KOG0645|consensus	312		100.0
KOG0318|consensus	603		100.0
KOG0273|consensus	524		100.0
KOG0296|consensus	399		100.0
KOG0279|consensus	315		100.0
KOG0266|consensus	456		100.0
KOG0263|consensus	707		100.0
KOG0285|consensus	460		100.0
KOG0273|consensus	524		100.0
KOG0291|consensus	893		100.0
KOG0319|consensus	775		100.0
KOG0276|consensus	794		100.0
KOG0643|consensus	327		100.0
KOG0286|consensus	343		100.0
KOG0282|consensus	503		100.0
KOG0263|consensus	707		100.0
KOG0316|consensus	307		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0306|consensus	888		100.0
KOG0291|consensus	893		100.0
KOG0319|consensus	775		100.0
KOG0278|consensus	334		100.0
KOG0281|consensus	499		100.0
KOG0318|consensus	603		100.0
KOG0288|consensus	459		100.0
KOG0285|consensus	460		100.0
KOG0284|consensus	464		100.0
KOG0295|consensus	406		100.0
KOG0266|consensus	456		100.0
KOG0315|consensus	311		100.0
KOG0292|consensus	1202		100.0
KOG0313|consensus	423		100.0
KOG0300|consensus	481		100.0
KOG0275|consensus	508		100.0
KOG0289|consensus	506		100.0
KOG0276|consensus	794		100.0
KOG0268|consensus	433		100.0
KOG0305|consensus	484		100.0
KOG0306|consensus	888		100.0
KOG0283|consensus	712		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0277|consensus	311		100.0
KOG0316|consensus	307		100.0
KOG0281|consensus	499		100.0
KOG0274|consensus	537		100.0
KOG0299|consensus	479		100.0
KOG1446|consensus	311		100.0
KOG0265|consensus	338		100.0
KOG0640|consensus	430		100.0
PTZ00421	493	coronin; Provisional	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0310|consensus	487		100.0
KOG1407|consensus	313		100.0
KOG0772|consensus	641		100.0
KOG0301|consensus	745		100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0278|consensus	334		100.0
KOG0292|consensus	1202		100.0
KOG0282|consensus	503		100.0
KOG0645|consensus	312		100.0
KOG1446|consensus	311		100.0
KOG2096|consensus	420		100.0
KOG0313|consensus	423		100.0
KOG0973|consensus	942		100.0
KOG0274|consensus	537		100.0
KOG0647|consensus	347		100.0
KOG0641|consensus	350		100.0
KOG0296|consensus	399		99.98
KOG1407|consensus	313		99.98
PTZ00421	493	coronin; Provisional	99.97
KOG0308|consensus	735		99.97
KOG0294|consensus	362		99.97
KOG0277|consensus	311		99.97
KOG1539|consensus	910		99.97
KOG1332|consensus	299		99.97
KOG0310|consensus	487		99.97
KOG1036|consensus	323		99.97
KOG1408|consensus	1080		99.97
KOG1274|consensus	933		99.97
PTZ00420	568	coronin; Provisional	99.97
KOG4283|consensus	397		99.97
KOG0293|consensus	519		99.97
KOG0643|consensus	327		99.97
KOG0305|consensus	484		99.97
KOG0973|consensus	942		99.97
KOG0288|consensus	459		99.97
KOG0308|consensus	735		99.97
KOG0275|consensus	508		99.96
KOG0289|consensus	506		99.96
KOG0641|consensus	350		99.96
KOG0264|consensus	422		99.96
KOG0283|consensus	712		99.96
KOG2106|consensus	626		99.96
KOG0647|consensus	347		99.96
KOG0646|consensus	476		99.96
KOG1063|consensus	764		99.96
KOG2106|consensus	626		99.96
KOG0264|consensus	422		99.96
KOG0299|consensus	479		99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG2055|consensus	514		99.96
KOG0268|consensus	433		99.96
KOG0294|consensus	362		99.96
KOG1332|consensus	299		99.96
KOG0267|consensus	825		99.95
KOG1036|consensus	323		99.95
KOG2445|consensus	361		99.95
KOG0639|consensus	705		99.95
KOG0640|consensus	430		99.95
KOG0301|consensus	745		99.95
KOG1273|consensus	405		99.95
KOG1274|consensus	933		99.95
KOG0650|consensus	733		99.95
KOG0269|consensus	839		99.94
KOG0772|consensus	641		99.94
KOG0321|consensus	720		99.94
KOG2048|consensus	691		99.94
KOG0639|consensus	705		99.94
KOG1063|consensus	764		99.94
KOG0267|consensus	825		99.94
KOG2445|consensus	361		99.94
KOG0646|consensus	476		99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG4328|consensus	498		99.93
KOG1538|consensus	1081		99.93
KOG0300|consensus	481		99.93
KOG0269|consensus	839		99.93
KOG4378|consensus	673		99.93
KOG0322|consensus	323		99.92
KOG1408|consensus	1080		99.92
KOG1034|consensus	385		99.92
KOG0270|consensus	463		99.92
COG2319	466	FOG: WD40 repeat [General function prediction only	99.92
KOG4283|consensus	397		99.92
KOG0642|consensus	577		99.92
KOG0302|consensus	440		99.92
KOG2048|consensus	691		99.91
KOG2919|consensus	406		99.91
KOG1539|consensus	910		99.91
COG2319	466	FOG: WD40 repeat [General function prediction only	99.9
KOG0302|consensus	440		99.9
KOG4328|consensus	498		99.9
KOG0270|consensus	463		99.9
KOG1009|consensus	434		99.9
KOG0321|consensus	720		99.89
KOG2096|consensus	420		99.89
KOG1188|consensus	376		99.89
KOG1517|consensus	1387		99.88
KOG4227|consensus	609		99.88
KOG2055|consensus	514		99.88
KOG1007|consensus	370		99.87
KOG0307|consensus	1049		99.87
KOG0649|consensus	325		99.86
KOG0307|consensus	1049		99.86
KOG1240|consensus	1431		99.85
KOG0303|consensus	472		99.85
KOG1334|consensus	559		99.84
KOG4378|consensus	673		99.84
KOG2919|consensus	406		99.84
PRK11028	330	6-phosphogluconolactonase; Provisional	99.84
KOG1587|consensus	555		99.84
KOG0644|consensus	1113		99.83
KOG2110|consensus	391		99.83
KOG1963|consensus	792		99.83
KOG1273|consensus	405		99.83
KOG1538|consensus	1081		99.83
KOG1034|consensus	385		99.82
KOG0649|consensus	325		99.81
KOG0303|consensus	472		99.81
KOG0771|consensus	398		99.81
KOG1524|consensus	737		99.81
KOG0650|consensus	733		99.8
KOG1524|consensus	737		99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.79
KOG1587|consensus	555		99.79
KOG1517|consensus	1387		99.78
PRK01742	429	tolB translocation protein TolB; Provisional	99.78
KOG2111|consensus	346		99.77
KOG0771|consensus	398		99.77
KOG1523|consensus	361		99.77
KOG0290|consensus	364		99.77
KOG1009|consensus	434		99.77
KOG1007|consensus	370		99.76
KOG0642|consensus	577		99.76
KOG0322|consensus	323		99.76
KOG1188|consensus	376		99.75
KOG2394|consensus	636		99.75
KOG0644|consensus	1113		99.74
KOG0290|consensus	364		99.74
KOG1445|consensus	1012		99.74
KOG1310|consensus	758		99.74
KOG2110|consensus	391		99.74
KOG1523|consensus	361		99.74
KOG1963|consensus	792		99.73
KOG4227|consensus	609		99.72
KOG1272|consensus	545		99.71
KOG2321|consensus	703		99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.7
KOG1445|consensus	1012		99.69
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.69
KOG1272|consensus	545		99.68
KOG2139|consensus	445		99.67
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.66
KOG1409|consensus	404		99.65
KOG1334|consensus	559		99.65
PRK03629	429	tolB translocation protein TolB; Provisional	99.64
KOG3881|consensus	412		99.63
KOG4497|consensus	447		99.63
PRK04922	433	tolB translocation protein TolB; Provisional	99.63
KOG3881|consensus	412		99.62
KOG4497|consensus	447		99.62
KOG1240|consensus	1431		99.62
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.61
PRK02889	427	tolB translocation protein TolB; Provisional	99.61
KOG1310|consensus	758		99.61
KOG2111|consensus	346		99.61
KOG0974|consensus	967		99.6
PRK05137	435	tolB translocation protein TolB; Provisional	99.58
KOG1064|consensus	2439		99.55
KOG1354|consensus	433		99.53
PRK03629	429	tolB translocation protein TolB; Provisional	99.53
PRK02889	427	tolB translocation protein TolB; Provisional	99.53
KOG1354|consensus	433		99.52
PRK05137	435	tolB translocation protein TolB; Provisional	99.52
KOG2315|consensus	566		99.52
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.51
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.51
PRK04922	433	tolB translocation protein TolB; Provisional	99.51
KOG2321|consensus	703		99.5
KOG0974|consensus	967		99.5
KOG4547|consensus	541		99.49
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.49
KOG2394|consensus	636		99.49
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.49
KOG2139|consensus	445		99.48
KOG4547|consensus	541		99.47
KOG0280|consensus	339		99.45
KOG2041|consensus	1189		99.42
PRK04792	448	tolB translocation protein TolB; Provisional	99.39
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.38
PRK00178	430	tolB translocation protein TolB; Provisional	99.37
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.37
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.37
PRK01029	428	tolB translocation protein TolB; Provisional	99.35
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.35
KOG2314|consensus	698		99.33
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.31
KOG4190|consensus	1034		99.3
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.3
KOG3914|consensus	390		99.3
PRK00178	430	tolB translocation protein TolB; Provisional	99.29
KOG1064|consensus	2439		99.28
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.26
KOG2315|consensus	566		99.25
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.25
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.25
PRK04792	448	tolB translocation protein TolB; Provisional	99.25
KOG0309|consensus	1081		99.23
PRK01029	428	tolB translocation protein TolB; Provisional	99.21
KOG2314|consensus	698		99.21
KOG4532|consensus	344		99.2
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.2
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.18
KOG2041|consensus	1189		99.17
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.17
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.14
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.13
KOG3914|consensus	390		99.11
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.11
KOG4190|consensus	1034		99.11
KOG1409|consensus	404		99.1
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.1
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.09
KOG4714|consensus	319		99.09
KOG0280|consensus	339		99.09
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.02
COG4946	668	Uncharacterized protein related to the periplasmic	99.02
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.98
COG4946	668	Uncharacterized protein related to the periplasmic	98.98
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.97
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.96
KOG1912|consensus	1062		98.95
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.93
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.9
KOG1832|consensus	1516		98.89
KOG0882|consensus	558		98.88
KOG2695|consensus	425		98.83
KOG4532|consensus	344		98.82
KOG2695|consensus	425		98.81
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.81
KOG1275|consensus	1118		98.81
KOG0309|consensus	1081		98.8
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.78
KOG4714|consensus	319		98.77
PRK04043	419	tolB translocation protein TolB; Provisional	98.74
KOG1912|consensus	1062		98.73
PRK04043	419	tolB translocation protein TolB; Provisional	98.71
KOG1920|consensus	1265		98.7
KOG0882|consensus	558		98.69
KOG1275|consensus	1118		98.68
KOG2114|consensus	933		98.55
KOG2114|consensus	933		98.52
KOG2066|consensus	846		98.48
KOG1645|consensus	463		98.45
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.43
PRK02888	635	nitrous-oxide reductase; Validated	98.42
KOG2066|consensus	846		98.4
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.35
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.31
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.31
KOG1920|consensus	1265		98.29
KOG1832|consensus	1516		98.29
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.27
KOG3617|consensus	1416		98.23
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.22
PRK02888	635	nitrous-oxide reductase; Validated	98.21
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.18
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.17
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.1
KOG2444|consensus	238		98.09
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.07
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.04
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.02
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.94
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.94
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.93
KOG1008|consensus	783		97.92
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.89
KOG1008|consensus	783		97.86
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.86
KOG1645|consensus	463		97.84
KOG4649|consensus	354		97.83
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.82
KOG3621|consensus	726		97.81
KOG4649|consensus	354		97.81
KOG3621|consensus	726		97.8
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.79
KOG4640|consensus	665		97.77
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.73
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.72
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.68
PHA02713	557	hypothetical protein; Provisional	97.61
KOG3617|consensus	1416		97.58
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.55
KOG4640|consensus	665		97.53
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.53
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.53
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.51
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.49
COG3391	381	Uncharacterized conserved protein [Function unknow	97.44
KOG2395|consensus	644		97.41
KOG2395|consensus	644		97.41
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.37
COG3391	381	Uncharacterized conserved protein [Function unknow	97.35
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.33
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.3
KOG4441|consensus	571		97.18
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.17
PHA02713	557	hypothetical protein; Provisional	97.16
KOG2079|consensus	1206		97.13
KOG2079|consensus	1206		97.1
PRK13616	591	lipoprotein LpqB; Provisional	97.1
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.06
PRK13616	591	lipoprotein LpqB; Provisional	97.04
KOG2444|consensus	238		97.02
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.01
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.98
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.93
KOG4441|consensus	571		96.88
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.86
KOG1897|consensus	1096		96.82
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.56
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.34
PHA02790	480	Kelch-like protein; Provisional	96.29
PRK13684	334	Ycf48-like protein; Provisional	96.26
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.26
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.25
PHA03098	534	kelch-like protein; Provisional	96.2
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.17
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.12
KOG1916|consensus	1283		96.06
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.06
PHA03098	534	kelch-like protein; Provisional	95.9
KOG2247|consensus	615		95.87
KOG3630|consensus	1405		95.86
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.69
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.39
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.36
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.11
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.01
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.91
KOG1916|consensus	1283		94.81
KOG3630|consensus	1405		94.71
KOG1897|consensus	1096		94.12
KOG2377|consensus	657		94.04
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.71
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.45
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.37
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.26
COG5167	776	VID27 Protein involved in vacuole import and degra	93.23
PHA02790	480	Kelch-like protein; Provisional	93.22
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.11
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	92.86
COG5167	776	VID27 Protein involved in vacuole import and degra	92.72
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	92.7
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	92.66
KOG2280|consensus	829		92.37
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.33
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.3
KOG4499|consensus	310		92.3
KOG4460|consensus	741		92.15
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.11
PF14727	418	PHTB1_N: PTHB1 N-terminus	91.67
PRK10115	686	protease 2; Provisional	91.48
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	91.39
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.24
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.17
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.11
KOG1900|consensus	1311		91.11
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	90.8
KOG4460|consensus	741		90.65
PRK13684	334	Ycf48-like protein; Provisional	90.59
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	90.26
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.92
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.78
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.68
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	89.12
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.67
KOG4499|consensus	310		88.63
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	88.18
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.16
KOG4659|consensus	1899		88.11
PF14727	418	PHTB1_N: PTHB1 N-terminus	88.05
COG1520	370	FOG: WD40-like repeat [Function unknown]	88.02
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	87.78
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.53
PF12768	281	Rax2: Cortical protein marker for cell polarity	87.38
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	87.02
KOG1520|consensus	376		86.81
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.65
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.25
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	85.68
PLN00033	398	photosystem II stability/assembly factor; Provisio	85.61
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	85.58
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	85.55
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	85.31
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	84.41
KOG2377|consensus	657		83.94
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.69
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.27
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	82.83
KOG2247|consensus	615		82.21

>KOG0286|consensus

Probab=100.00  E-value=5.1e-75  Score=460.22  Aligned_cols=340  Identities=79%  Similarity=1.307  Sum_probs=331.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCccccceeeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEE
Q psy15421          1 MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLI   80 (340)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~   80 (340)
                      |+|++.+++|.+.+++.++++++...|..+.+....+++.++++++.+++|+||..+|+++.|++|.++|+|+|.||.+.
T Consensus         1 ~~~~~~l~~Eae~L~~qi~~~r~~~~D~~l~q~a~~~~~~~~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklI   80 (343)
T KOG0286|consen    1 MEELEQLRQEAEQLKNQIRDARKKLNDVTLAQIAERLESVGRIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLI   80 (343)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhccccceeeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEE
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCC--CCceEEEEeecCCCcceEEEEEcCCCeEE
Q psy15421         81 VWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTR--EGNVRVSRELPGHTGYLSCCRFLDDNQIV  158 (340)
Q Consensus        81 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~l~  158 (340)
                      |||..+..+++.++....||.+++|+|.|+++|+|+-|+.+.||++.++  ++...+.+.+.+|++++.+|.|.+++.|+
T Consensus        81 vWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~il  160 (343)
T KOG0286|consen   81 VWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHIL  160 (343)
T ss_pred             EEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceE
Confidence            9999999999999999999999999999999999999999999999877  66677888899999999999999999999


Q ss_pred             EEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecC
Q psy15421        159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAP-DMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPN  237 (340)
Q Consensus       159 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~  237 (340)
                      ++++|.++.+||+++++.+..|.+|.+.|++++++| +++.|++|+.|+..++||+|.+.++++|.+|+..|++|.|+|+
T Consensus       161 T~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~  240 (343)
T KOG0286|consen  161 TGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPS  240 (343)
T ss_pred             ecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccC
Confidence            999999999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEE
Q psy15421        238 GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSC  317 (340)
Q Consensus       238 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~  317 (340)
                      |.-|++|+.|+++++||++..+.+..|.++...++|++++||..|++|++|..|.++.+||..+++....+.||++.|+|
T Consensus       241 G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvSc  320 (343)
T KOG0286|consen  241 GDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSC  320 (343)
T ss_pred             CCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEE
Confidence            99999999999999999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCCEEEEeeCCCcEEecC
Q psy15421        318 LGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       318 ~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |..+|||..|++||+|.++|||.
T Consensus       321 l~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  321 LGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEECCCCcEEEecchhHheeecC
Confidence            99999999999999999999995

>KOG0271|consensus

Probab=100.00  E-value=2.3e-56  Score=365.89  Aligned_cols=292  Identities=28%  Similarity=0.495  Sum_probs=261.9

Q ss_pred             eeeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEE
Q psy15421         43 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICS  122 (340)
Q Consensus        43 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~  122 (340)
                      ...+....+.||.++|.+++|+|+++.|+||+.|.++|+||..+....++.++|..+|.+++|+|||+.+|+|+.||.|+
T Consensus       103 pvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~  182 (480)
T KOG0271|consen  103 PVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR  182 (480)
T ss_pred             ccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence            34455567999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCceEEEEeecCCCcceEEEEEcC------CCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCC
Q psy15421        123 IYSLKTREGNVRVSRELPGHTGYLSCCRFLD------DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDM  196 (340)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  196 (340)
                      +||..+++.   +.+.+++|...+.+++|.+      ..+|++++.||.++|||+..++++..+.+|+.+|+|++|--+ 
T Consensus       183 lwdpktg~~---~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-  258 (480)
T KOG0271|consen  183 LWDPKTGQQ---IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-  258 (480)
T ss_pred             EecCCCCCc---ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-
Confidence            999877653   5577899999999999953      346889999999999999999999999999999999999644 


Q ss_pred             CEEEEEeCCCcEEEEECCCCeeeeEe------------------------------------------------------
Q psy15421        197 RTFVSGACDASAKLWDIRDGSCKQTF------------------------------------------------------  222 (340)
Q Consensus       197 ~~~~sg~~dg~i~~wd~~~~~~~~~~------------------------------------------------------  222 (340)
                      .++++||.|++|++|+...|.+.+.+                                                      
T Consensus       259 gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~er  338 (480)
T KOG0271|consen  259 GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGER  338 (480)
T ss_pred             ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcce
Confidence            48899999999999986544322221                                                      


Q ss_pred             -------------------------cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEE
Q psy15421        223 -------------------------PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVA  277 (340)
Q Consensus       223 -------------------------~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  277 (340)
                                               .+|...|+.+.|+||++++|++|.|++|++||.++++.+..+.  ++..+|+.++
T Consensus       339 lVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR--GHv~~VYqva  416 (480)
T KOG0271|consen  339 LVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR--GHVAAVYQVA  416 (480)
T ss_pred             eEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh--hccceeEEEE
Confidence                                     2466678899999999999999999999999999999888764  4456799999


Q ss_pred             EcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       278 ~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |+.|.++|++|+.|.++++|+..+.+....+.||.+.|.++.|+|||+.++||+.|..+++|.
T Consensus       417 wsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  417 WSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             eccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999999999999999999999999999999999999999999999999994

>KOG0272|consensus

Probab=100.00  E-value=3.1e-53  Score=351.40  Aligned_cols=282  Identities=28%  Similarity=0.493  Sum_probs=262.2

Q ss_pred             CccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCC--CCEEEEEeCCCeEEEEEccCCC
Q psy15421         53 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS--GSFVACGGLDNICSIYSLKTRE  130 (340)
Q Consensus        53 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~--~~~l~~~~~d~~v~i~~~~~~~  130 (340)
                      |-..+|..+.|++|++.|+|||.+|.+++|+..+...+.++.+|...+.++.|+|.  +.-+|+++.||++++|++.+..
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~  252 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET  252 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence            55689999999999999999999999999999999999999999999999999997  6789999999999999997642


Q ss_pred             CceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q psy15421        131 GNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAK  209 (340)
Q Consensus       131 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~  209 (340)
                          ....+.+|...|..+.|++++ .|++++.|.+-++||+++++.+.-..+|...|.+++|+|||.+++||+.|..-+
T Consensus       253 ----~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~R  328 (459)
T KOG0272|consen  253 ----PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGR  328 (459)
T ss_pred             ----chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhh
Confidence                445678999999999999876 578899999999999999988877889999999999999999999999999999


Q ss_pred             EEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcC-CCcEEEEE
Q psy15421        210 LWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSR-SGRLLLAG  288 (340)
Q Consensus       210 ~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g  288 (340)
                      +||+++++++-.+.+|..+|.+|+|+|+|..+||||.|++++|||++..+.+.++.  .+..-|+.|.|+| .|.+|+++
T Consensus       329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip--AH~nlVS~Vk~~p~~g~fL~Ta  406 (459)
T KOG0272|consen  329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP--AHSNLVSQVKYSPQEGYFLVTA  406 (459)
T ss_pred             eeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc--cccchhhheEecccCCeEEEEc
Confidence            99999999999999999999999999999999999999999999999877766553  3334588999999 79999999


Q ss_pred             eCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        289 YDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       289 ~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +.|+++++|...++.+++.+.||++.|.++.++||+++++|+|.|.++++|.
T Consensus       407 syD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  407 SYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999999999999999999999999999999999999995

>KOG0279|consensus

Probab=100.00  E-value=1.8e-44  Score=284.88  Aligned_cols=286  Identities=27%  Similarity=0.398  Sum_probs=243.4

Q ss_pred             EEeEEecCccCcEEEEEEcCC-CCeEEEEeCCCeEEEEeCCC-----CCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCC
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSD-SRNLVSASQDGKLIVWDSYT-----TNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDN  119 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~  119 (340)
                      ..+-+|+||++.|..++..+. ...+++++.|.++.+|++..     +..+..+.+|+..|..++.+++|+|+++++.|+
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence            445689999999999999886 45788999999999998753     455778899999999999999999999999999


Q ss_pred             eEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecC--CCCeEEEEEcCC-
Q psy15421        120 ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGH--TGDVMSLSLAPD-  195 (340)
Q Consensus       120 ~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~-  195 (340)
                      ++++||+.+++    ..+.+.+|...|.++.|+++ .++++|+.|.+|++|+...... .++..+  .+.|+|+.|+|+ 
T Consensus        86 ~lrlWDl~~g~----~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~  160 (315)
T KOG0279|consen   86 TLRLWDLATGE----STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNE  160 (315)
T ss_pred             eEEEEEecCCc----EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCC
Confidence            99999998763    44567899999999999866 4799999999999999976443 343332  778999999998 


Q ss_pred             -CCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceE
Q psy15421        196 -MRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGIT  274 (340)
Q Consensus       196 -~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~  274 (340)
                       ...+++++.|++||+||+++.+....+.+|.+.++.++++|||..+++|+.||.+.+||++.++.+..+.+..   .|.
T Consensus       161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~---~v~  237 (315)
T KOG0279|consen  161 SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFD---IVN  237 (315)
T ss_pred             CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCC---eEe
Confidence             5789999999999999999999999999999999999999999999999999999999999998877665543   599


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeecc----C-----CcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        275 SVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAG----H-----DNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       275 ~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~----h-----~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +++|+|.--.|+.+... .|+|||..+...+..+..    .     .-...+++||+||+.|++|-.|+.|++|.
T Consensus       238 sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  238 SLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             eEEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence            99999987666666554 599999988776655432    1     11235689999999999999999999993

>KOG0315|consensus

Probab=100.00  E-value=2.3e-43  Score=274.39  Aligned_cols=269  Identities=23%  Similarity=0.392  Sum_probs=232.7

Q ss_pred             CeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceE
Q psy15421         68 RNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLS  147 (340)
Q Consensus        68 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~  147 (340)
                      -+|+|+|.|.+||+|.+.+|.+..+++..++.|..+...|++++||+++.. .||+||+++....  ...++.+|+..|.
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~--Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN--PVATFEGHTKNVT   87 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC--ceeEEeccCCceE
Confidence            478999999999999999999999999999999999999999999988765 4799999876543  5677889999999


Q ss_pred             EEEEcCCCe-EEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEe-cCC
Q psy15421        148 CCRFLDDNQ-IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTF-PGH  225 (340)
Q Consensus       148 ~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~-~~h  225 (340)
                      .+-|..+++ +.+|+.||+++|||++... +++...|.++|+++..+|+...|++|..+|.|++||+.+..+.+.+ +..
T Consensus        88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~-~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~  166 (311)
T KOG0315|consen   88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLS-CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPED  166 (311)
T ss_pred             EEEEeecCeEEEecCCCceEEEEeccCcc-cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence            999987665 7889999999999999844 4555668899999999999999999999999999999988776554 445


Q ss_pred             CCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeec----CCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCC
Q psy15421        226 ESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSH----DNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       226 ~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~  301 (340)
                      ..+|.++.+.|||.+++.+..-|.+++|++...+....+..    ..+..-+..+.+|||+++||+++.|.+++||+..+
T Consensus       167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~  246 (311)
T KOG0315|consen  167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD  246 (311)
T ss_pred             CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence            56899999999999999999999999999876543322211    11223378899999999999999999999999887


Q ss_pred             c-eeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        302 T-ERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       302 ~-~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      . +....+.+|.++++..+||.||.||++||.|+++|+|+
T Consensus       247 ~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~  286 (311)
T KOG0315|consen  247 FFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD  286 (311)
T ss_pred             ceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence            7 66778899999999999999999999999999999996

>KOG0295|consensus

Probab=100.00  E-value=3.9e-44  Score=292.29  Aligned_cols=289  Identities=25%  Similarity=0.403  Sum_probs=264.8

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      ..+.+.||..+|+.+-|+|+-..+++++.|++|++||..+++....+++|.+.+.+++|+..|+++++++.|-.+++||.
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~  179 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF  179 (406)
T ss_pred             chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcC-CCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLD-DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                      .+.   ....+.+.+|.-.|.++.|.+ +..+++++.|.+|+.|++.++.++.++.+|...|..++.+.||..+++++.|
T Consensus       180 ~~~---~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d  256 (406)
T KOG0295|consen  180 DTF---FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND  256 (406)
T ss_pred             HHH---HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCC
Confidence            653   233455678888899988865 4689999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEECCCCeeeeEecCCCCCeEEEEEecC---------------CCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcc
Q psy15421        206 ASAKLWDIRDGSCKQTFPGHESDINAVTFFPN---------------GWAFATGSDDATCRLFDIRADQELAMYSHDNII  270 (340)
Q Consensus       206 g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~---------------~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~  270 (340)
                      .++++|-+.++++...+.+|+-+|.+++|.|.               +.++.+++.|++|++||+.++..+.++.  ++.
T Consensus       257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~--ghd  334 (406)
T KOG0295|consen  257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV--GHD  334 (406)
T ss_pred             ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe--ccc
Confidence            99999999999999999999999999999762               2589999999999999999998877653  333


Q ss_pred             cceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        271 CGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       271 ~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ..|..++|+|.|+||+++.+|+++++||..+..++..+..|+..|+++.|..+..+++|||.|.++++|.
T Consensus       335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            4689999999999999999999999999999999999999999999999999999999999999999994

>KOG0272|consensus

Probab=100.00  E-value=3e-44  Score=298.06  Aligned_cols=254  Identities=24%  Similarity=0.387  Sum_probs=229.8

Q ss_pred             cccceeeEEeEEecCccCcEEEEEEcCC--CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEe
Q psy15421         39 PIGRIQMRTRRTLRGHLAKIYAMHWGSD--SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGG  116 (340)
Q Consensus        39 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~  116 (340)
                      .+...+.....+|+||.+.|.++.|+|.  +..++||+.||++++|++.+...+..+.+|...|..++|+|+|+||++++
T Consensus       201 vW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tas  280 (459)
T KOG0272|consen  201 VWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTAS  280 (459)
T ss_pred             EeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecc
Confidence            3344455667899999999999999997  56899999999999999998888999999999999999999999999999


Q ss_pred             CCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCe-EEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCC
Q psy15421        117 LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPD  195 (340)
Q Consensus       117 ~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  195 (340)
                      .|.+-++||+.++...    ....||...|.++.|.+++- +++|+-|..-++||++++.++..+.+|..+|.+|+|+|+
T Consensus       281 fD~tWRlWD~~tk~El----L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPN  356 (459)
T KOG0272|consen  281 FDSTWRLWDLETKSEL----LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPN  356 (459)
T ss_pred             cccchhhcccccchhh----HhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCC
Confidence            9999999999886532    23469999999999987764 567778999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceE
Q psy15421        196 MRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFP-NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGIT  274 (340)
Q Consensus       196 ~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~  274 (340)
                      |..++|||.|+++++||++...++.++++|..-|..|.|.| .|.+|+|+|.|++++||..++.+++..+.  ++...|.
T Consensus       357 Gy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa--GHe~kV~  434 (459)
T KOG0272|consen  357 GYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA--GHEGKVI  434 (459)
T ss_pred             ceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc--CCccceE
Confidence            99999999999999999999888999999999999999999 68899999999999999999998887653  3334599


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEEEe
Q psy15421        275 SVAFSRSGRLLLAGYDDFNCNVWD  298 (340)
Q Consensus       275 ~~~~s~~~~~l~~g~~d~~i~iw~  298 (340)
                      ++..+|+++++++++.|+++++|.
T Consensus       435 s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  435 SLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EEEeccCCceEEEeccCceeeecc
Confidence            999999999999999999999995

>KOG0265|consensus

Probab=100.00  E-value=2.1e-42  Score=275.73  Aligned_cols=285  Identities=22%  Similarity=0.351  Sum_probs=248.2

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCC-CCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYT-TNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      ..+.||.+.|+.+.|+|+|..|+|||.|+.|.+|+++. .+....+++|.++|..+.|.+|++.+++++.|++++.||+.
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~  120 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE  120 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence            34789999999999999999999999999999999764 44556778999999999999999999999999999999998


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCC--eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDN--QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                      ++.    ..+...+|...|+.+....-+  .+.+++.|+++++||+++...++.+. ..-+++++.|..++...++|+-|
T Consensus       121 tG~----~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggId  195 (338)
T KOG0265|consen  121 TGK----RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGID  195 (338)
T ss_pred             cce----eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecccc
Confidence            874    456677899999988754433  35567889999999999877666554 34568999999999999999999


Q ss_pred             CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCC----cEEEEeecC--CcccceEEEEEc
Q psy15421        206 ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD----QELAMYSHD--NIICGITSVAFS  279 (340)
Q Consensus       206 g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~~--~~~~~i~~~~~s  279 (340)
                      +.|++||++.+.....+.||..+|+.+..+|+|.++.+-+-|.++++||++..    +.+..+...  +...-...++|+
T Consensus       196 n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws  275 (338)
T KOG0265|consen  196 NDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS  275 (338)
T ss_pred             CceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc
Confidence            99999999999999999999999999999999999999999999999998742    234444321  222235678999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        280 RSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       280 ~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      |++.++.+|+.|..+++||......+..+.||.+.|+++.|+|....|.|++.|.+|.+
T Consensus       276 p~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  276 PNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             CCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            99999999999999999999888999999999999999999999999999999999976

>KOG0271|consensus

Probab=100.00  E-value=1.9e-43  Score=290.09  Aligned_cols=245  Identities=27%  Similarity=0.489  Sum_probs=218.1

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCee-EEeeCCCCcEEEEEECC-----CCCEEEEEeCCCeE
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKV-HAIPLRSSWVMTCAYAP-----SGSFVACGGLDNIC  121 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~i~~v~~~~-----~~~~l~~~~~d~~v  121 (340)
                      ..+.+||..-|.|++|+||++.|+||+.||+|++||..+++.+ ..+++|..+|.+++|.|     ..++||+++.||.|
T Consensus       150 ~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~v  229 (480)
T KOG0271|consen  150 LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSV  229 (480)
T ss_pred             ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCE
Confidence            4678999999999999999999999999999999999988765 67899999999999976     56799999999999


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEE-----------------------
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCA-----------------------  178 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~-----------------------  178 (340)
                      +|||+..+    .....+.+|+..|+|++|-.++.+.+++.|++|++|+...|..+.                       
T Consensus       230 rIWd~~~~----~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtg  305 (480)
T KOG0271|consen  230 RIWDTKLG----TCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTG  305 (480)
T ss_pred             EEEEccCc----eEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcc
Confidence            99998765    356678899999999999888999999999999999864322111                       


Q ss_pred             --------------------------------------------------------EEecCCCCeEEEEEcCCCCEEEEE
Q psy15421        179 --------------------------------------------------------SFIGHTGDVMSLSLAPDMRTFVSG  202 (340)
Q Consensus       179 --------------------------------------------------------~~~~~~~~v~~~~~~~~~~~~~sg  202 (340)
                                                                              ++.+|...|+.+.|+||+++++++
T Consensus       306 af~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASa  385 (480)
T KOG0271|consen  306 AFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASA  385 (480)
T ss_pred             ccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEe
Confidence                                                                    124677888999999999999999


Q ss_pred             eCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCC
Q psy15421        203 ACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSG  282 (340)
Q Consensus       203 ~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  282 (340)
                      |.|..|++||.++|+.+.+|.+|-.+|..++|+.|.+.+++||.|.++++|++++.+....+  .++...|.++.|+|||
T Consensus       386 SFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL--pGh~DEVf~vDwspDG  463 (480)
T KOG0271|consen  386 SFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL--PGHADEVFAVDWSPDG  463 (480)
T ss_pred             ecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC--CCCCceEEEEEecCCC
Confidence            99999999999999999999999999999999999999999999999999999987765544  3445579999999999


Q ss_pred             cEEEEEeCCCcEEEEe
Q psy15421        283 RLLLAGYDDFNCNVWD  298 (340)
Q Consensus       283 ~~l~~g~~d~~i~iw~  298 (340)
                      ..+++|+.|..+++|.
T Consensus       464 ~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  464 QRVASGGKDKVLRLWR  479 (480)
T ss_pred             ceeecCCCceEEEeec
Confidence            9999999999999994

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.7e-40  Score=283.69  Aligned_cols=286  Identities=35%  Similarity=0.601  Sum_probs=254.1

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccC
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKT  128 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~  128 (340)
                      ++|++|.++|.+++|+|++++|++++.||.+++|+..+++....+..|...+..+.|.|+++++++++.++.+++|++..
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            46789999999999999999999999999999999998888888888888899999999999999999999999999976


Q ss_pred             CCCceEEEEeecCCCcceEEEEEcCCCeEEE-EeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q psy15421        129 REGNVRVSRELPGHTGYLSCCRFLDDNQIVT-SSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDAS  207 (340)
Q Consensus       129 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~-~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~  207 (340)
                      +.    ....+..|...+.++.|.+++.++. ++.++.+.+||+.+++....+..|...+.+++|+|++.++++++.|+.
T Consensus        83 ~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  158 (289)
T cd00200          83 GE----CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT  158 (289)
T ss_pred             cc----ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence            42    2344557888899999987765554 445999999999988888888889999999999999888888888999


Q ss_pred             EEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEE
Q psy15421        208 AKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLA  287 (340)
Q Consensus       208 i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
                      |++||+++++....+..|...+.++.|+|++..+++++.|+.+++||++..+.+..+.  .+...+.++.|+|++.++++
T Consensus       159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~  236 (289)
T cd00200         159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR--GHENGVNSVAFSPDGYLLAS  236 (289)
T ss_pred             EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh--hcCCceEEEEEcCCCcEEEE
Confidence            9999999888888888899899999999999999999999999999998877766552  12236899999999999999


Q ss_pred             EeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        288 GYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       288 g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++.|+.+++|+..+++....+..|...|.+++|+|++.+|++++.|+.|++|+
T Consensus       237 ~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            98899999999988888888889999999999999999999999999999997

>KOG0284|consensus

Probab=100.00  E-value=1.2e-43  Score=293.21  Aligned_cols=279  Identities=28%  Similarity=0.453  Sum_probs=245.2

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEE
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV  135 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  135 (340)
                      ..|..+.|.|+|+.|++|+..|...+|+.....-...++.|+++|.++.|++++.++++|+.++.|++|+.....    +
T Consensus        97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn----V  172 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN----V  172 (464)
T ss_pred             cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh----h
Confidence            479999999999999999999999999987665556678999999999999999999999999999999876432    1


Q ss_pred             EEeecCCCcceEEEEEcC-CCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy15421        136 SRELPGHTGYLSCCRFLD-DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIR  214 (340)
Q Consensus       136 ~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~  214 (340)
                      ......|...|.++.|++ +.+|++++.|++|+|||....+....+.+|.-.|.+++|+|...++++|+.|..|++||.+
T Consensus       173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr  252 (464)
T KOG0284|consen  173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR  252 (464)
T ss_pred             HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence            122234558899999975 5689999999999999999888888889999999999999999999999999999999999


Q ss_pred             CCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCC-cEEEEEeCCCc
Q psy15421        215 DGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSG-RLLLAGYDDFN  293 (340)
Q Consensus       215 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~d~~  293 (340)
                      ++.|+.++.+|...|..+.|.|++.+|+|+|.|..++++|++..+.+..+.  .+...++++.|+|-. .+|++|+.||.
T Consensus       253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r--~Hkkdv~~~~WhP~~~~lftsgg~Dgs  330 (464)
T KOG0284|consen  253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR--GHKKDVTSLTWHPLNESLFTSGGSDGS  330 (464)
T ss_pred             CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh--cchhhheeeccccccccceeeccCCCc
Confidence            999999999999999999999999999999999999999999766665543  333458999999975 47778999999


Q ss_pred             EEEEeCCCceee-eeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        294 CNVWDSMKTERA-GILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       294 i~iw~~~~~~~~-~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |..|.....+++ ..-.+|+..|++++|+|=|..|++||.|.++|.|.
T Consensus       331 vvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  331 VVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             eEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            999998744444 44568999999999999999999999999999994

>KOG0293|consensus

Probab=100.00  E-value=4.2e-42  Score=284.62  Aligned_cols=298  Identities=19%  Similarity=0.339  Sum_probs=243.9

Q ss_pred             CCccccceeeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC---eeEEeeCCCCcEEEEEECCCCCEE
Q psy15421         36 NMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN---KVHAIPLRSSWVMTCAYAPSGSFV  112 (340)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~i~~v~~~~~~~~l  112 (340)
                      +.....+++..+.+.|..|.++|+-+.||++|++|||++.|.+..||.+....   ..+++.+|..+|.-+.||||.+||
T Consensus       205 h~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryL  284 (519)
T KOG0293|consen  205 HFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYL  284 (519)
T ss_pred             cccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeE
Confidence            33334456667788999999999999999999999999999999999875443   467888999999999999999999


Q ss_pred             EEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCC-CCeEEE
Q psy15421        113 ACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHT-GDVMSL  190 (340)
Q Consensus       113 ~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~v~~~  190 (340)
                      ++++.+..+.+||..+++.....   ..++...+.+++|.+++ .+++|+.|+++..||+..+ .....++.. ..|.++
T Consensus       285 laCg~~e~~~lwDv~tgd~~~~y---~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dl  360 (519)
T KOG0293|consen  285 LACGFDEVLSLWDVDTGDLRHLY---PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDL  360 (519)
T ss_pred             EecCchHheeeccCCcchhhhhc---ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEE
Confidence            99999999999999887633211   12356778888888775 6999999999999999753 344444433 358999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEe-ecCCc
Q psy15421        191 SLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMY-SHDNI  269 (340)
Q Consensus       191 ~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~  269 (340)
                      ++++||+.+++...|..|++++.+....+.... ...+|++...+.+++++++--.+..+++||+...+.+..+ +|..-
T Consensus       361 ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~  439 (519)
T KOG0293|consen  361 AITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQG  439 (519)
T ss_pred             EEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccccc
Confidence            999999999999999999999987665544443 4568999999999999999999999999999865554433 33322


Q ss_pred             ccceEEEEEc-CCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCC-CCEEEEeeCCCcEEec
Q psy15421        270 ICGITSVAFS-RSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTED-GMAVATGSWDSFLRIW  339 (340)
Q Consensus       270 ~~~i~~~~~s-~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d-~~~l~s~s~D~~i~iW  339 (340)
                      .. +..-+|- -+..++++|+.|+.|+||+..+++++..+.||...|+||+|+|. ..++||||+||+||||
T Consensus       440 ~f-iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIW  510 (519)
T KOG0293|consen  440 HF-IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIW  510 (519)
T ss_pred             ce-EEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence            22 3333554 35589999999999999999999999999999999999999994 5689999999999999

>KOG0645|consensus

Probab=100.00  E-value=3.9e-40  Score=259.32  Aligned_cols=284  Identities=21%  Similarity=0.372  Sum_probs=237.6

Q ss_pred             EeEEecCccCcEEEEEEcCC-CCeEEEEeCCCeEEEEeCCCCCe---eEEe-eCCCCcEEEEEECCCCCEEEEEeCCCeE
Q psy15421         47 TRRTLRGHLAKIYAMHWGSD-SRNLVSASQDGKLIVWDSYTTNK---VHAI-PLRSSWVMTCAYAPSGSFVACGGLDNIC  121 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~---~~~~-~~~~~~i~~v~~~~~~~~l~~~~~d~~v  121 (340)
                      ..++++||.++|+.++|+|- |..|+|||.|++|+||+...+..   ...+ .+|...|.+++|+|.|+||++|+.|.++
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~   85 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV   85 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence            45688999999999999998 88999999999999999875332   2222 3688899999999999999999999999


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCc---eEEEEecCCCCeEEEEEcCCCC
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQ---QCASFIGHTGDVMSLSLAPDMR  197 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~  197 (340)
                      -||.-.  ++......++.+|...|.++.|+.+ ++|++++.|++|-||.+..+.   +...+..|...|..+.|+|...
T Consensus        86 ~Iw~k~--~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d  163 (312)
T KOG0645|consen   86 VIWKKE--DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED  163 (312)
T ss_pred             EEeecC--CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence            999864  3445667889999999999999876 578899999999999987543   4567889999999999999999


Q ss_pred             EEEEEeCCCcEEEEECC---CCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceE
Q psy15421        198 TFVSGACDASAKLWDIR---DGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGIT  274 (340)
Q Consensus       198 ~~~sg~~dg~i~~wd~~---~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~  274 (340)
                      +|+++|-|.+||+|+-.   .-.+.+++.+|...|.+++|+|.|..+++++.|++++||-....-.     . .+...++
T Consensus       164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~-----~-~~sr~~Y  237 (312)
T KOG0645|consen  164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS-----G-MHSRALY  237 (312)
T ss_pred             eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc-----h-hcccceE
Confidence            99999999999999866   2358899999999999999999999999999999999998653211     1 1122477


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEEEeCCCce------ee-eeeccCCcceEEEEECCC-CCEEEEeeCCCcEEecC
Q psy15421        275 SVAFSRSGRLLLAGYDDFNCNVWDSMKTE------RA-GILAGHDNRVSCLGVTED-GMAVATGSWDSFLRIWN  340 (340)
Q Consensus       275 ~~~~s~~~~~l~~g~~d~~i~iw~~~~~~------~~-~~~~~h~~~i~~~~~s~d-~~~l~s~s~D~~i~iW~  340 (340)
                      .+.|.  .-.|++++.|+.|++|......      .+ ..-..|+..|++++|.|. ..+|+|||.||.|++|.
T Consensus       238 ~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  238 DVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             eeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence            88888  5689999999999999865421      11 133468899999999994 67899999999999993

>KOG0318|consensus

Probab=100.00  E-value=2.1e-40  Score=282.12  Aligned_cols=293  Identities=20%  Similarity=0.340  Sum_probs=244.6

Q ss_pred             eeeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEee---CCCCcEEEEEECCCCCEEEEEeCCC
Q psy15421         43 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP---LRSSWVMTCAYAPSGSFVACGGLDN  119 (340)
Q Consensus        43 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~i~~v~~~~~~~~l~~~~~d~  119 (340)
                      ++++.+.+++.|..-|.++.|+|||..++|++.||++.+||-.+++.+..+.   +|.+.|+.++|+||++.+++++.|+
T Consensus       178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk  257 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK  257 (603)
T ss_pred             CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence            4667788899999999999999999999999999999999999999998887   8999999999999999999999999


Q ss_pred             eEEEEEccCCCCceEEEEeecC-C--CcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCC
Q psy15421        120 ICSIYSLKTREGNVRVSRELPG-H--TGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDM  196 (340)
Q Consensus       120 ~v~i~~~~~~~~~~~~~~~~~~-~--~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  196 (340)
                      +++|||+.+..    +..+++- .  ......|.|. +..|++.+-+|.+.+++...+.....+.+|...|+++..+|++
T Consensus       258 t~KIWdVs~~s----lv~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~  332 (603)
T KOG0318|consen  258 TIKIWDVSTNS----LVSTWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG  332 (603)
T ss_pred             eEEEEEeeccc----eEEEeecCCchhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC
Confidence            99999998763    2233322 1  1334455565 6679999999999999999999889999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeeee-----------EecC---------------------------C-------------
Q psy15421        197 RTFVSGACDASAKLWDIRDGSCKQ-----------TFPG---------------------------H-------------  225 (340)
Q Consensus       197 ~~~~sg~~dg~i~~wd~~~~~~~~-----------~~~~---------------------------h-------------  225 (340)
                      ++|++|+.||.|.-||..++..-+           .+..                           +             
T Consensus       333 ~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~la  412 (603)
T KOG0318|consen  333 KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLA  412 (603)
T ss_pred             CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEE
Confidence            999999999999999976542110           0000                           0             


Q ss_pred             ------------------------------CCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEE
Q psy15421        226 ------------------------------ESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITS  275 (340)
Q Consensus       226 ------------------------------~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~  275 (340)
                                                    .....+++++|++..++.|+.|+.+++|.+........-....+..+|++
T Consensus       413 v~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~  492 (603)
T KOG0318|consen  413 VLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITD  492 (603)
T ss_pred             EcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceE
Confidence                                          01124788999999999999999999999986543322222334457999


Q ss_pred             EEEcCCCcEEEEEeCCCcEEEEeCCCceee-eeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERA-GILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       276 ~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~-~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++||||+.|||+|...+.+-+|+..+.+.. ..+.-|...|+|++|||+..++|+||.|-+|.||+
T Consensus       493 vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys  558 (603)
T KOG0318|consen  493 VAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS  558 (603)
T ss_pred             EEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence            999999999999999999999998877663 34556999999999999999999999999999995

>KOG0273|consensus

Probab=100.00  E-value=7.4e-41  Score=281.41  Aligned_cols=277  Identities=20%  Similarity=0.370  Sum_probs=247.0

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEE
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV  135 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  135 (340)
                      ..|++++|+.+|..|++|+.||.++||+. ++..+.++..|.++|.++.|+..|+|+++++.|+++.+||..++..    
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~----  310 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV----  310 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE----
Confidence            57999999999999999999999999995 5777888999999999999999999999999999999999876542    


Q ss_pred             EEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy15421        136 SRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRD  215 (340)
Q Consensus       136 ~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~  215 (340)
                      ...++-|+..-..+.|..+..+++++.|+.|+++-+....++.++.+|.++|.++.|+|.+.+|+++|.|++++||.+..
T Consensus       311 ~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  311 KQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             EEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence            22344466654446677778899999999999999998899999999999999999999999999999999999999998


Q ss_pred             CeeeeEecCCCCCeEEEEEecCC---------CEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEE
Q psy15421        216 GSCKQTFPGHESDINAVTFFPNG---------WAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLL  286 (340)
Q Consensus       216 ~~~~~~~~~h~~~v~~v~~~~~~---------~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  286 (340)
                      ..+...+++|+..|..+.|+|+|         ..+++++.|.+|++||+..+.++..+.  .+..+|++++|+|+|+++|
T Consensus       391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~--kH~~pVysvafS~~g~ylA  468 (524)
T KOG0273|consen  391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM--KHQEPVYSVAFSPNGRYLA  468 (524)
T ss_pred             CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec--cCCCceEEEEecCCCcEEE
Confidence            88899999999999999999965         468999999999999999999988773  2234699999999999999


Q ss_pred             EEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        287 AGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       287 ~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +|+.||.|.+|+..+++..+.+.+ .+-|..|+|+.+|..|..+-.|+.+.+-|
T Consensus       469 sGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvld  521 (524)
T KOG0273|consen  469 SGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLD  521 (524)
T ss_pred             ecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence            999999999999999998888765 45699999999999999999999988754

>KOG0296|consensus

Probab=100.00  E-value=1e-40  Score=272.51  Aligned_cols=288  Identities=18%  Similarity=0.293  Sum_probs=249.2

Q ss_pred             eEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q psy15421         45 MRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIY  124 (340)
Q Consensus        45 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~  124 (340)
                      ..+..+|..|.++|++++.+|+.++++|||.|....||++.++.....+.+|...|.++.|+.+|.|||+|+.+|.|+||
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~  133 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF  133 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEe
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGA  203 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~  203 (340)
                      +..++.....    +.....-+..+.|++.. .|++|+.||.+-+|.+.+...++.+.+|..++++-.|.|+|+++++|.
T Consensus       134 ~~stg~~~~~----~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy  209 (399)
T KOG0296|consen  134 KVSTGGEQWK----LDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY  209 (399)
T ss_pred             EcccCceEEE----eecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEe
Confidence            9988754333    33445567788888765 578899999999999998888899999999999999999999999999


Q ss_pred             CCCcEEEEECCCCeeeeEecC---------------------------------------------------CCCCeEEE
Q psy15421        204 CDASAKLWDIRDGSCKQTFPG---------------------------------------------------HESDINAV  232 (340)
Q Consensus       204 ~dg~i~~wd~~~~~~~~~~~~---------------------------------------------------h~~~v~~v  232 (340)
                      .||+|++|+..++++...+.+                                                   ++..+.+|
T Consensus       210 ~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv  289 (399)
T KOG0296|consen  210 DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV  289 (399)
T ss_pred             cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence            999999999998876654431                                                   01111222


Q ss_pred             EEec---CCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeec
Q psy15421        233 TFFP---NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA  309 (340)
Q Consensus       233 ~~~~---~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~  309 (340)
                      .+.|   .=..+|+|+-||+|.|||+......+.+.|+.   +|+.+.|-+ .++|++++.||+|+.||.+++.....+.
T Consensus       290 e~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~---~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~  365 (399)
T KOG0296|consen  290 ESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED---GVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT  365 (399)
T ss_pred             hhcccccccchhhcccccceEEEEecccchhheeccCCC---ceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe
Confidence            2222   23457899999999999998877777766553   599999998 7999999999999999999999999999


Q ss_pred             cCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        310 GHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       310 ~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ||...|.+++++|++++++++|.|++.+|++
T Consensus       366 GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  366 GHQMGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             cCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence            9999999999999999999999999999874

>KOG0279|consensus

Probab=100.00  E-value=6.8e-41  Score=264.62  Aligned_cols=250  Identities=26%  Similarity=0.421  Sum_probs=216.2

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      ..++.|.||...|..+..++|+++.+|++.|+++++||+.+++..+.+.+|...|.+++|+||.+.+++|+.|+++++|+
T Consensus        54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwn  133 (315)
T KOG0279|consen   54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN  133 (315)
T ss_pred             ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeee
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEcCCC---eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEE
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFLDDN---QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSG  202 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg  202 (340)
                      +..   .++....-..+...|.|++|+|+.   .+++++.|++|++||+++.+....+.+|.+.++.++++|||...++|
T Consensus       134 t~g---~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG  210 (315)
T KOG0279|consen  134 TLG---VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG  210 (315)
T ss_pred             ecc---cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC
Confidence            853   233333333458899999998763   68899999999999999999889999999999999999999999999


Q ss_pred             eCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcc-------cceEE
Q psy15421        203 ACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNII-------CGITS  275 (340)
Q Consensus       203 ~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~-------~~i~~  275 (340)
                      +.||++.+||++.+++...+. |...|++++|+|+...|+. ..+-.|+|||+.++..+..+..+...       -.-.+
T Consensus       211 gkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cls  288 (315)
T KOG0279|consen  211 GKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLS  288 (315)
T ss_pred             CCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEE
Confidence            999999999999999877775 7889999999998755544 45667999999987766554332211       11357


Q ss_pred             EEEcCCCcEEEEEeCCCcEEEEeCC
Q psy15421        276 VAFSRSGRLLLAGYDDFNCNVWDSM  300 (340)
Q Consensus       276 ~~~s~~~~~l~~g~~d~~i~iw~~~  300 (340)
                      ++|+++|..|++|..|+.|++|...
T Consensus       289 laws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  289 LAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEEcCCCcEEEeeecCCcEEEEEee
Confidence            8999999999999999999999864

>KOG0266|consensus

Probab=100.00  E-value=3.9e-40  Score=298.36  Aligned_cols=290  Identities=29%  Similarity=0.540  Sum_probs=257.6

Q ss_pred             eEEecCc-cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC--eeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q psy15421         48 RRTLRGH-LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN--KVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIY  124 (340)
Q Consensus        48 ~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~  124 (340)
                      ...+.+| ...|.++.|+++|+.+++++.|+.+++|+....+  ....+.+|...|..++|+|++.++++++.|++++||
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW  230 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence            4455554 7899999999999999999999999999997777  667778899999999999999999999999999999


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEe
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGA  203 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~  203 (340)
                      ++...   ....+++.+|...|.++.|.+.+ .+++|+.|++|++||++++++...+.+|.+.|.+++|++++.++++++
T Consensus       231 d~~~~---~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s  307 (456)
T KOG0266|consen  231 DLKDD---GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS  307 (456)
T ss_pred             eccCC---CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC
Confidence            99332   24567788999999999998775 788999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEECCCCe--eeeEecCCCCC--eEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCc-ccceEEEEE
Q psy15421        204 CDASAKLWDIRDGS--CKQTFPGHESD--INAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNI-ICGITSVAF  278 (340)
Q Consensus       204 ~dg~i~~wd~~~~~--~~~~~~~h~~~--v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~~  278 (340)
                      .|+.|++||+.++.  +...+.++..+  ++++.|+|++.++++++.|+.+++||+.....+..+..... ...+.+..+
T Consensus       308 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~  387 (456)
T KOG0266|consen  308 YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL  387 (456)
T ss_pred             CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc
Confidence            99999999999998  56777777665  99999999999999999999999999998777665543222 234566677


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCceeeeeeccC-CcceEEEEECCCCCEEEEee--CCCcEEecC
Q psy15421        279 SRSGRLLLAGYDDFNCNVWDSMKTERAGILAGH-DNRVSCLGVTEDGMAVATGS--WDSFLRIWN  340 (340)
Q Consensus       279 s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h-~~~i~~~~~s~d~~~l~s~s--~D~~i~iW~  340 (340)
                      ++.++++++|+.|+.|++|+..++..+..+.+| ...+..++++|...++++++  .|+.+++|.
T Consensus       388 ~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  388 STGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             cCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence            899999999999999999999999889999999 89999999999999999999  799999994

>KOG0263|consensus

Probab=100.00  E-value=1.2e-41  Score=302.71  Aligned_cols=277  Identities=27%  Similarity=0.447  Sum_probs=235.1

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      ...++.--...+.|..|++|+.+||.|-.|..|++|.+...+ +..++....          ...+-+.+.|-.+...|-
T Consensus       370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~~----------l~~~d~~sad~~~~~~D~  438 (707)
T KOG0263|consen  370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDASD----------LSNIDTESADVDVDMLDD  438 (707)
T ss_pred             EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccchhh----------hccccccccchhhhhccc
Confidence            344555445678999999999999999999999999876543 233322111          111112333333444443


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                      ....    ..+++.+|+++|..+.|+++. .|++++.|+++++|.+.+..++..+.+|..+|+.+.|+|.|-+|+|+|.|
T Consensus       439 ~~~~----~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D  514 (707)
T KOG0263|consen  439 DSSG----TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHD  514 (707)
T ss_pred             cCCc----eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCC
Confidence            3322    335578999999999998875 68889999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEE
Q psy15421        206 ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLL  285 (340)
Q Consensus       206 g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
                      ++.++|......+.+.+.+|-..|.|+.|+|+..|+++||.|.++++||+.++..+..|.  ++..+|.+++|||+|++|
T Consensus       515 ~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~--GH~~~V~al~~Sp~Gr~L  592 (707)
T KOG0263|consen  515 QTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT--GHKGPVTALAFSPCGRYL  592 (707)
T ss_pred             ceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec--CCCCceEEEEEcCCCceE
Confidence            999999999889999999999999999999999999999999999999999988877763  355689999999999999


Q ss_pred             EEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        286 LAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       286 ~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++|+.|+.|.+||+.+++.+..+.+|.+.|+++.||.||..||+||.|.+|++||
T Consensus       593 aSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD  647 (707)
T KOG0263|consen  593 ASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD  647 (707)
T ss_pred             eecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence            9999999999999999999999999999999999999999999999999999997

>KOG0285|consensus

Probab=100.00  E-value=1.3e-40  Score=271.21  Aligned_cols=289  Identities=21%  Similarity=0.346  Sum_probs=255.2

Q ss_pred             eeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEE
Q psy15421         44 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSI  123 (340)
Q Consensus        44 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i  123 (340)
                      ..+..+.++||.+-|.|+++.|-+.+++||+.|++++|||+.+++...++.+|-..|..+++|+--.|+++++.|+.|+.
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC  219 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC  219 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence            34556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEE
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSG  202 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg  202 (340)
                      ||+...    ++.+...+|-+.|.++...+. ..|++++.|.++++||+++...+..+.+|..+|.++.+.|-...+++|
T Consensus       220 wDLe~n----kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~  295 (460)
T KOG0285|consen  220 WDLEYN----KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG  295 (460)
T ss_pred             Eechhh----hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence            999654    356778899999999988764 679999999999999999999999999999999999999988899999


Q ss_pred             eCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCC
Q psy15421        203 ACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSG  282 (340)
Q Consensus       203 ~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  282 (340)
                      |.|++|++||++.|+....+..|...+.+++.+|....|||++.| .|+-|++..+..+..+..  +..-|++++.+.|+
T Consensus       296 S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsg--h~~iintl~~nsD~  372 (460)
T KOG0285|consen  296 SHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSG--HNAIINTLSVNSDG  372 (460)
T ss_pred             cCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccc--ccceeeeeeeccCc
Confidence            999999999999999999999999999999999999999999987 689999987766655432  22347888888775


Q ss_pred             cEEEEEeCCCcEEEEeCCCceeeeeec-----c---CCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        283 RLLLAGYDDFNCNVWDSMKTERAGILA-----G---HDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       283 ~~l~~g~~d~~i~iw~~~~~~~~~~~~-----~---h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                       ++++|+++|.+.+||.+++...+...     |   -+..|.+.+|...|..|++|..|.+|++|.
T Consensus       373 -v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  373 -VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK  437 (460)
T ss_pred             -eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence             77899999999999988876554431     1   245689999999999999999999999994

>KOG0273|consensus

Probab=100.00  E-value=3.2e-40  Score=277.54  Aligned_cols=283  Identities=22%  Similarity=0.378  Sum_probs=242.6

Q ss_pred             EEecCccCcEEEEEEcCCCC-eEEEEeCCCeEEEEeCCCCC------ee--EE--eeCC----CCcEEEEEECCCCCEEE
Q psy15421         49 RTLRGHLAKIYAMHWGSDSR-NLVSASQDGKLIVWDSYTTN------KV--HA--IPLR----SSWVMTCAYAPSGSFVA  113 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~------~~--~~--~~~~----~~~i~~v~~~~~~~~l~  113 (340)
                      +.++ |..+|.+.+|+|-.. .+++++.|-+.++|++...-      .+  +.  ..++    ...|++++|+.+|.+||
T Consensus       173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La  251 (524)
T KOG0273|consen  173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA  251 (524)
T ss_pred             eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence            4455 999999999999766 89999999999999986411      00  00  0111    24689999999999999


Q ss_pred             EEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEE
Q psy15421        114 CGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSL  192 (340)
Q Consensus       114 ~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~  192 (340)
                      +|+.||.+++|+....     ...++..|.++|..+.|... ++|++++-|+++.+||..++...+.+.-|..+-..+.|
T Consensus       252 tG~~~G~~riw~~~G~-----l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW  326 (524)
T KOG0273|consen  252 TGSEDGEARIWNKDGN-----LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW  326 (524)
T ss_pred             EeecCcEEEEEecCch-----hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence            9999999999997532     34567889999999999865 57899999999999999999988888889888788888


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccc
Q psy15421        193 APDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICG  272 (340)
Q Consensus       193 ~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  272 (340)
                      -.+. -|++++.||.|+++.+....++.++.+|.++|+++.|.|.+..|+|+|.|++++||.+........+.  .+...
T Consensus       327 ~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~--~Hske  403 (524)
T KOG0273|consen  327 QSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ--AHSKE  403 (524)
T ss_pred             ecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh--hhccc
Confidence            7654 57899999999999999999999999999999999999999999999999999999987665544332  23345


Q ss_pred             eEEEEEcCCCc---------EEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        273 ITSVAFSRSGR---------LLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       273 i~~~~~s~~~~---------~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |..+.|+|+|+         .+++++.|++|++||...+.++..+..|..+|++|+|||+|+++|+|+.||.|.+|+
T Consensus       404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws  480 (524)
T KOG0273|consen  404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS  480 (524)
T ss_pred             eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence            88999999754         799999999999999999999999999999999999999999999999999999996

>KOG0291|consensus

Probab=100.00  E-value=4.5e-39  Score=284.43  Aligned_cols=296  Identities=26%  Similarity=0.448  Sum_probs=244.0

Q ss_pred             eeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCe--eEEeeCCCCcEEEEEECCCCCEEEEEeCCCeE
Q psy15421         44 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNK--VHAIPLRSSWVMTCAYAPSGSFVACGGLDNIC  121 (340)
Q Consensus        44 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v  121 (340)
                      ++...+++.||.+.|.++.|+.|.++|++||.|-+++||++...+.  ...+.+|..+|..+.|..+...+++.+.||.+
T Consensus       134 pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l  213 (893)
T KOG0291|consen  134 PFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGAL  213 (893)
T ss_pred             cceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceE
Confidence            3455688999999999999999999999999999999999887665  56778999999999999999999999999999


Q ss_pred             EEEEccCC-----------------------CCc-----eEEE--EeecCCCcceEEEEEcCCC----------------
Q psy15421        122 SIYSLKTR-----------------------EGN-----VRVS--RELPGHTGYLSCCRFLDDN----------------  155 (340)
Q Consensus       122 ~i~~~~~~-----------------------~~~-----~~~~--~~~~~~~~~v~~~~~~~~~----------------  155 (340)
                      .+|....+                       +++     ....  .-+......|.++.|++..                
T Consensus       214 ~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Lye  293 (893)
T KOG0291|consen  214 FVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYE  293 (893)
T ss_pred             EEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEe
Confidence            99987611                       110     0000  0011111233333333221                


Q ss_pred             ---------------------------eEEEEeC-CCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q psy15421        156 ---------------------------QIVTSSG-DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDAS  207 (340)
Q Consensus       156 ---------------------------~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~  207 (340)
                                                 -++.++. -|++-+|+.++...+..-++|...+.+++++|||++++||+.||.
T Consensus       294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK  373 (893)
T KOG0291|consen  294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK  373 (893)
T ss_pred             cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCc
Confidence                                       2222222 356777777766666666789999999999999999999999999


Q ss_pred             EEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEE
Q psy15421        208 AKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLA  287 (340)
Q Consensus       208 i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
                      ||+||.+++-|..+|..|...|+.+.|+..|+.+++.|-||+|+.||+...+.-.++..+... ...|++..|.|.++.+
T Consensus       374 VKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~-QfscvavD~sGelV~A  452 (893)
T KOG0291|consen  374 VKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI-QFSCVAVDPSGELVCA  452 (893)
T ss_pred             EEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce-eeeEEEEcCCCCEEEe
Confidence            999999999999999999999999999999999999999999999999988776666544432 3689999999999999


Q ss_pred             EeCC-CcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        288 GYDD-FNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       288 g~~d-~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |+.| ..|.+|+..+++.+-.+.||+++|.+++|+|+|+.|+|||+|.+||+||
T Consensus       453 G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~  506 (893)
T KOG0291|consen  453 GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD  506 (893)
T ss_pred             eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence            9876 6899999999999999999999999999999999999999999999997

>KOG0319|consensus

Probab=100.00  E-value=2.5e-40  Score=291.80  Aligned_cols=303  Identities=22%  Similarity=0.323  Sum_probs=263.2

Q ss_pred             CCCccccceeeEEeEEecCccCcEEEEEE-cCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEE
Q psy15421         35 GNMEPIGRIQMRTRRTLRGHLAKIYAMHW-GSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVA  113 (340)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~  113 (340)
                      .+.-.++.-..+..+.+-|..++|.+|+| .|+.++++.+++.+.+|+++..+..+. .+++|...|.++....+|-+|+
T Consensus       303 Qnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~lla  381 (775)
T KOG0319|consen  303 QNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLA  381 (775)
T ss_pred             ceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEE
Confidence            34444443445566778899999999997 578899999999999999988776664 7899999999998777789999


Q ss_pred             EEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCce-----EE----EEec
Q psy15421        114 CGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQ-----CA----SFIG  182 (340)
Q Consensus       114 ~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~-----~~----~~~~  182 (340)
                      +|+.|+++++|.++..-..........+|+..|.++.++..  ..|++++.|.++++|++...+.     ..    ....
T Consensus       382 t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a  461 (775)
T KOG0319|consen  382 TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA  461 (775)
T ss_pred             EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence            99999999999985444333344455689999998888644  3689999999999999976221     11    2246


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEE
Q psy15421        183 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELA  262 (340)
Q Consensus       183 ~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  262 (340)
                      |...|++++++|+.++++|||.|++.++|+++.......+.||...|.+|.|+|....+||+|.|++||||.+.+..++.
T Consensus       462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk  541 (775)
T KOG0319|consen  462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK  541 (775)
T ss_pred             hcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        263 MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       263 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++.  ++.+.|..+.|-.+++.|++++.||.+++|++++.+++..+..|.+.|++++.+|.+.++++|+.||.|.+|.
T Consensus       542 T~e--GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  542 TFE--GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             eec--CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            874  4456799999999999999999999999999999999999999999999999999999999999999999993

>KOG0276|consensus

Probab=100.00  E-value=3.1e-40  Score=286.26  Aligned_cols=287  Identities=20%  Similarity=0.367  Sum_probs=259.6

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      +.+++|..|.++|.++.|+|..++++++-..|.|.|||.++...+..+.....+|.+..|-+..+.+++|+.|..|+||+
T Consensus         4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn   83 (794)
T KOG0276|consen    4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN   83 (794)
T ss_pred             hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEe
Confidence            45677888999999999999999999999999999999999988889988888999999999999999999999999999


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCC-ceEEEEecCCCCeEEEEEcC-CCCEEEEE
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETG-QQCASFIGHTGDVMSLSLAP-DMRTFVSG  202 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~sg  202 (340)
                      ..+.+    ....+.+|..++.++..+|.. .+++++.|..|++||.+.+ .+.+.+.+|...|++++|.| |.+.|+++
T Consensus        84 ynt~e----kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~  159 (794)
T KOG0276|consen   84 YNTGE----KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA  159 (794)
T ss_pred             cccce----eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence            98865    456788999999999888764 6889999999999999876 46688999999999999999 45689999


Q ss_pred             eCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcC
Q psy15421        203 ACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPN--GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSR  280 (340)
Q Consensus       203 ~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  280 (340)
                      +-|++||+|.+.+..+..++++|+..|+||.+.+.  ..+++||+.|.++++||+.+.+++.++.  ++..-|+++.|+|
T Consensus       160 sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe--GHt~Nvs~v~fhp  237 (794)
T KOG0276|consen  160 SLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE--GHTNNVSFVFFHP  237 (794)
T ss_pred             eccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh--cccccceEEEecC
Confidence            99999999999999999999999999999999974  4799999999999999999888877664  2333589999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        281 SGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       281 ~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      .-.++++|+.||+++||+..+.+....+....+.|+|++-.+.+..++.|.+.|.|.|
T Consensus       238 ~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  238 ELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             CCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            9999999999999999999999999999988999999999998888999999888754

>KOG0643|consensus

Probab=100.00  E-value=5.4e-39  Score=252.45  Aligned_cols=282  Identities=20%  Similarity=0.310  Sum_probs=240.4

Q ss_pred             EecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q psy15421         50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTR  129 (340)
Q Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~  129 (340)
                      .|+||..+++.+.|+.+|.+|+||+.|.+..+|-..+++.+-+..+|.+.|.++....+.+++++|+.|+++++||+.++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCceEEEEeecCCCcceEEEEEcCCCeEEEEeCC------CeEEEEECC-------CCceEEEEecCCCCeEEEEEcCCC
Q psy15421        130 EGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGD------MSCALWDIE-------TGQQCASFIGHTGDVMSLSLAPDM  196 (340)
Q Consensus       130 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d------~~v~iwd~~-------~~~~~~~~~~~~~~v~~~~~~~~~  196 (340)
                      .....    . .-...|..+.|+.++.++..+.|      +.|.++|++       ..++...+..+.+.+..+-|.|-+
T Consensus        85 k~la~----~-k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~  159 (327)
T KOG0643|consen   85 KQLAT----W-KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG  159 (327)
T ss_pred             cEEEE----e-ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence            53322    2 13456778888877765555444      568899987       345577778888999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCe-eeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEE
Q psy15421        197 RTFVSGACDASAKLWDIRDGS-CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITS  275 (340)
Q Consensus       197 ~~~~sg~~dg~i~~wd~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~  275 (340)
                      +.+++|..||.|..||+++|. .+.+-+.|+..|+.+.++||..+|+++|.|.+-++||.++...++.+..+   .+|++
T Consensus       160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te---~PvN~  236 (327)
T KOG0643|consen  160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE---RPVNT  236 (327)
T ss_pred             CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec---ccccc
Confidence            999999999999999999984 56666889999999999999999999999999999999998888887654   46999


Q ss_pred             EEEcCCCcEEEEEeCCC--------------cEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        276 VAFSRSGRLLLAGYDDF--------------NCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       276 ~~~s~~~~~l~~g~~d~--------------~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      .+++|-...++.|+...              ..++|+.-..|.++...+|-++|++|+|+|||...+||+.||.|||-
T Consensus       237 aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h  314 (327)
T KOG0643|consen  237 AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH  314 (327)
T ss_pred             eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence            99999877776655331              22344444456677889999999999999999999999999999973

>KOG0286|consensus

Probab=100.00  E-value=6.3e-38  Score=249.36  Aligned_cols=243  Identities=20%  Similarity=0.411  Sum_probs=214.1

Q ss_pred             EEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEE-EEeCCCeEEEE
Q psy15421         91 HAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIV-TSSGDMSCALW  169 (340)
Q Consensus        91 ~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~-~~~~d~~v~iw  169 (340)
                      .++++|...|+++.|++|.+++++++.||.+.|||.-+..    ....++-.+..|..|.|+|.+.++ +|+-|+...||
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn----K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN----KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY  124 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc----ceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence            6788999999999999999999999999999999987653    334566678899999999887655 55669999999


Q ss_pred             ECCCC------ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEec-CCCEEE
Q psy15421        170 DIETG------QQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFP-NGWAFA  242 (340)
Q Consensus       170 d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~  242 (340)
                      ++.+.      +..+.+.+|.+.+.|+.|.+| ..++|+|.|.++.+||+++++.+..|.+|.+.|.+++++| +++.|+
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFv  203 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFV  203 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEE
Confidence            99855      234568899999999999884 5788999999999999999999999999999999999999 899999


Q ss_pred             EEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccC--CcceEEEEE
Q psy15421        243 TGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGH--DNRVSCLGV  320 (340)
Q Consensus       243 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h--~~~i~~~~~  320 (340)
                      ||+-|+..++||++.+..+..|.  .+...|+++.|.|+|.-+++|++|+++|+||++....+..+...  ...|++++|
T Consensus       204 Sg~cD~~aklWD~R~~~c~qtF~--ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~F  281 (343)
T KOG0286|consen  204 SGGCDKSAKLWDVRSGQCVQTFE--GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAF  281 (343)
T ss_pred             ecccccceeeeeccCcceeEeec--ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEE
Confidence            99999999999999998887774  33456999999999999999999999999999988777776522  357899999


Q ss_pred             CCCCCEEEEeeCCCcEEecC
Q psy15421        321 TEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       321 s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |..|++|++|..|.++.|||
T Consensus       282 S~SGRlLfagy~d~~c~vWD  301 (343)
T KOG0286|consen  282 SKSGRLLFAGYDDFTCNVWD  301 (343)
T ss_pred             cccccEEEeeecCCceeEee
Confidence            99999999999999999997

>KOG0282|consensus

Probab=100.00  E-value=3.9e-40  Score=277.91  Aligned_cols=288  Identities=23%  Similarity=0.400  Sum_probs=244.6

Q ss_pred             EeEEecCccCcEEEEEEcC-CCCeEEEEeCCCeEEEEeCCC-CCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q psy15421         47 TRRTLRGHLAKIYAMHWGS-DSRNLVSASQDGKLIVWDSYT-TNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIY  124 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~  124 (340)
                      ...++.||+..|.++.|.| .+.+|+|++.|+.|+||+++. ++++.++.+|..+|..+.|+++|..+++++.|+.+++|
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw  285 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW  285 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence            3578999999999999999 889999999999999999987 78899999999999999999999999999999999999


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEE
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSG  202 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg  202 (340)
                      |+.++....+    +. -.....|+.|.++  +.+++|+.|+.|+.||+++++.++.+..|-+.+..+.|-++++++++.
T Consensus       286 DtETG~~~~~----f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  286 DTETGQVLSR----FH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS  360 (503)
T ss_pred             ccccceEEEE----Ee-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence            9987752221    11 1224566777665  468899999999999999999988888899999999999999999999


Q ss_pred             eCCCcEEEEECCCCeeeeEe-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEE---Ee-ecCCcccceEEEE
Q psy15421        203 ACDASAKLWDIRDGSCKQTF-PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELA---MY-SHDNIICGITSVA  277 (340)
Q Consensus       203 ~~dg~i~~wd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~---~~-~~~~~~~~i~~~~  277 (340)
                      +.|+++++|+.+.+..+... ..+.....++..+|++..++.-+-|..|.+|.+...-++.   .+ +|..... -..+.
T Consensus       361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy-s~~v~  439 (503)
T KOG0282|consen  361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY-SCQVD  439 (503)
T ss_pred             ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc-eeeEE
Confidence            99999999999987665433 2233457789999999999999999999999865322211   11 2222223 35789


Q ss_pred             EcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCC-CEEEEeeCCCcEEecC
Q psy15421        278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDG-MAVATGSWDSFLRIWN  340 (340)
Q Consensus       278 ~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~-~~l~s~s~D~~i~iW~  340 (340)
                      |||||.+|++|+.||.+.+||..+.+.+..+..|.+++..+.|+|.. +.+|+||.||.|++|+
T Consensus       440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            99999999999999999999999999999999999999999999954 6899999999999997

>KOG0263|consensus

Probab=100.00  E-value=7.5e-39  Score=284.86  Aligned_cols=208  Identities=30%  Similarity=0.530  Sum_probs=196.6

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      ..++|.||.++|+.+.|+|+.++|+|+|.|+++|+|.+.+...+...++|..+|..+.|+|.|-|||+++.|++.++|..
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST  522 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence            45779999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                      ...    ...+.+.+|-+-|.|+.|+|+ +++++|+.|.+|++||+.+|..++.|.+|.++|.+++|+|+|+++++|+.|
T Consensus       523 d~~----~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed  598 (707)
T KOG0263|consen  523 DHN----KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED  598 (707)
T ss_pred             ccC----CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence            653    356777899999999999876 578999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCC
Q psy15421        206 ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD  258 (340)
Q Consensus       206 g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  258 (340)
                      |.|++||+.++..+..+.+|.+.|.++.|+.+|..||+||.|.+|++||+...
T Consensus       599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             CcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            99999999999999999999999999999999999999999999999998753

>KOG0316|consensus

Probab=100.00  E-value=8.3e-38  Score=241.63  Aligned_cols=285  Identities=21%  Similarity=0.324  Sum_probs=244.6

Q ss_pred             eEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q psy15421         45 MRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIY  124 (340)
Q Consensus        45 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~  124 (340)
                      .+..+.|..|+++|.++.|+.||++.+++++|++|++||...+..+++..+|...|..++.+.|...+++++.|+.|.+|
T Consensus         7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw   86 (307)
T KOG0316|consen    7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW   86 (307)
T ss_pred             chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence            34557889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCC--ceEEEEecCCCCeEEEEEcCCCCEEEE
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETG--QQCASFIGHTGDVMSLSLAPDMRTFVS  201 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~s  201 (340)
                      |+.++.    ..+.+.+|...|+.+.|+++. .+++|+-|.++++||-++.  ++++.+....+.|+++...  +..+++
T Consensus        87 DV~TGk----v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva  160 (307)
T KOG0316|consen   87 DVNTGK----VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA  160 (307)
T ss_pred             EcccCe----eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence            999874    667889999999999998764 6788999999999998764  5677777778889999886  446899


Q ss_pred             EeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEee-cCCcccceEEEEEcC
Q psy15421        202 GACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSR  280 (340)
Q Consensus       202 g~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~  280 (340)
                      |+.||+++.||++.|+....+-+  .||+++.|++++...+.++-|+++++.|-.+++.+..+. |.+.... ..++++.
T Consensus       161 GS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk-ldc~l~q  237 (307)
T KOG0316|consen  161 GSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK-LDCCLNQ  237 (307)
T ss_pred             eccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceee-eeeeecc
Confidence            99999999999999987666544  489999999999999999999999999999988877653 4444333 3557788


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcc-eEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        281 SGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNR-VSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       281 ~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~-i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      ....+++|+.||.+++||+.....+..+.-|... |.+++++|--..++++. ++.+..|
T Consensus       238 sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~  296 (307)
T KOG0316|consen  238 SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFW  296 (307)
T ss_pred             cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceece
Confidence            8889999999999999999999888888878777 78999999765555554 3334444

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.4e-36  Score=294.23  Aligned_cols=281  Identities=15%  Similarity=0.239  Sum_probs=229.4

Q ss_pred             ecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCC----C----eeEEeeCCCCcEEEEEECC-CCCEEEEEeCCCeE
Q psy15421         51 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTT----N----KVHAIPLRSSWVMTCAYAP-SGSFVACGGLDNIC  121 (340)
Q Consensus        51 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~----~----~~~~~~~~~~~i~~v~~~~-~~~~l~~~~~d~~v  121 (340)
                      +.+|...|.+++|+|+++++++|+.|++|+|||....    .    ....+. +...+.+++|+| ++.+|++++.|++|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            4569999999999999999999999999999997532    1    112222 345688899987 47899999999999


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcC-C-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEc-CCCCE
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLD-D-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLA-PDMRT  198 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~  198 (340)
                      ++||+.++.    ....+.+|...|.++.|++ + ..|++++.|+.|++||+++++.+..+..+ ..+.++.|+ +++..
T Consensus       558 ~lWd~~~~~----~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~  632 (793)
T PLN00181        558 QVWDVARSQ----LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRS  632 (793)
T ss_pred             EEEECCCCe----EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCE
Confidence            999987542    4456778999999999974 3 57889999999999999998887777654 578999995 57899


Q ss_pred             EEEEeCCCcEEEEECCCCe-eeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCC------cEEEEeecCCccc
Q psy15421        199 FVSGACDASAKLWDIRDGS-CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD------QELAMYSHDNIIC  271 (340)
Q Consensus       199 ~~sg~~dg~i~~wd~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~------~~~~~~~~~~~~~  271 (340)
                      +++|+.||.|++||++++. ....+.+|...|.++.|. ++.++++++.|+.|++||++..      .++..+.  .+..
T Consensus       633 latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~  709 (793)
T PLN00181        633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTN  709 (793)
T ss_pred             EEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCC
Confidence            9999999999999998765 466788999999999997 6789999999999999998742      2333332  2334


Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeee-------------eeccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        272 GITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAG-------------ILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       272 ~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~-------------~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      .+.+++|+|++++|++|+.|+.|++|+.....+..             ....|...|.+++|+|++.+|++|+.||+|+|
T Consensus       710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i  789 (793)
T PLN00181        710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKI  789 (793)
T ss_pred             CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEE
Confidence            57889999999999999999999999965443221             12345678999999999999999999999999


Q ss_pred             cC
Q psy15421        339 WN  340 (340)
Q Consensus       339 W~  340 (340)
                      |+
T Consensus       790 ~~  791 (793)
T PLN00181        790 LE  791 (793)
T ss_pred             Ee
Confidence            96

>KOG0306|consensus

Probab=100.00  E-value=9.2e-38  Score=276.05  Aligned_cols=282  Identities=22%  Similarity=0.411  Sum_probs=246.8

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccC
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKT  128 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~  128 (340)
                      .++.||+..|.+++++.+...++||+. +.++|||..+.+++.++.-  ..+.+..|-|.++++++|...|.+.+||+..
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS  443 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS  443 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence            467899999999999998887777655 5899999999999998874  4889999999999999999999999999976


Q ss_pred             CCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCC-----CceEE-------EEecCCCCeEEEEEcCC
Q psy15421        129 REGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIET-----GQQCA-------SFIGHTGDVMSLSLAPD  195 (340)
Q Consensus       129 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~-----~~~~~-------~~~~~~~~v~~~~~~~~  195 (340)
                      ..    ...+.++|.+.+..+...+++ .+++++.|.+|++||..-     +..-.       +.......|.|+.++||
T Consensus       444 ~~----l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spd  519 (888)
T KOG0306|consen  444 AS----LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPD  519 (888)
T ss_pred             hh----hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCC
Confidence            53    445667999999998887765 699999999999999742     22111       22335678999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEE-EeecCCcccceE
Q psy15421        196 MRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELA-MYSHDNIICGIT  274 (340)
Q Consensus       196 ~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~~~~~~~i~  274 (340)
                      +++++.+--|.+|++|-+.+-+...++.||.-||.|+..+||++.++|||.|++|++|-+.-+.+-. .+.|.   .+|+
T Consensus       520 gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHd---DSvm  596 (888)
T KOG0306|consen  520 GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHD---DSVM  596 (888)
T ss_pred             CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhccc---Ccee
Confidence            9999999999999999999988888999999999999999999999999999999999887554433 33343   4699


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        275 SVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       275 ~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++.|-|...++.+++.|+.|+.||-.+.+.+..+.+|...|+|++.+|+|.+++|+|+|.+||+|.
T Consensus       597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             EEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence            999999999999999999999999999999999999999999999999999999999999999994

>KOG0291|consensus

Probab=100.00  E-value=7.7e-37  Score=270.38  Aligned_cols=295  Identities=20%  Similarity=0.336  Sum_probs=248.8

Q ss_pred             cccceeeEEeEEecCccCcEEEEEEcCCCCeEEEEeCC-CeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeC
Q psy15421         39 PIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQD-GKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGL  117 (340)
Q Consensus        39 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~  117 (340)
                      .+..+.+...+.|.--..+|..++|+..|.+|+-|+.. |.+-||+.....-+...++|...+.+++++|||.++|+|+.
T Consensus       291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e  370 (893)
T KOG0291|consen  291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE  370 (893)
T ss_pred             EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC
Confidence            33344555667777777899999999999999988765 89999999888878888899999999999999999999999


Q ss_pred             CCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCC-CCeEEEEEcCC
Q psy15421        118 DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHT-GDVMSLSLAPD  195 (340)
Q Consensus       118 d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~  195 (340)
                      |+.|+|||...+    ....++..|++.|..+.|...+ .+++.+-||+|+.||+......+++.... -...|++..|.
T Consensus       371 DgKVKvWn~~Sg----fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s  446 (893)
T KOG0291|consen  371 DGKVKVWNTQSG----FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS  446 (893)
T ss_pred             CCcEEEEeccCc----eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC
Confidence            999999998765    3567788999999999997654 57888889999999999888888776533 34789999999


Q ss_pred             CCEEEEEeCC-CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCC-cEEEEeecCCcccce
Q psy15421        196 MRTFVSGACD-ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD-QELAMYSHDNIICGI  273 (340)
Q Consensus       196 ~~~~~sg~~d-g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~i  273 (340)
                      |..+..|+.| -.|.+|++++|+.+-.+.||++||.+++|+|.+..|+|||.|++||+||+-.. ..+..+...   ..+
T Consensus       447 GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~---sdv  523 (893)
T KOG0291|consen  447 GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIR---SDV  523 (893)
T ss_pred             CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeec---cce
Confidence            9999999887 57899999999999999999999999999999999999999999999998643 233333332   248


Q ss_pred             EEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeecc--------------------CCcceEEEEECCCCCEEEEeeCC
Q psy15421        274 TSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAG--------------------HDNRVSCLGVTEDGMAVATGSWD  333 (340)
Q Consensus       274 ~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~--------------------h~~~i~~~~~s~d~~~l~s~s~D  333 (340)
                      ..++|+|+|+.|++++-||.|.+||.........+.+                    .....+.+++|+||..|++|+..
T Consensus       524 l~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~s  603 (893)
T KOG0291|consen  524 LAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGES  603 (893)
T ss_pred             eEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCc
Confidence            8999999999999999999999999876555432221                    12467899999999999999999


Q ss_pred             CcEEecC
Q psy15421        334 SFLRIWN  340 (340)
Q Consensus       334 ~~i~iW~  340 (340)
                      ..|.+++
T Consensus       604 n~iCiY~  610 (893)
T KOG0291|consen  604 NSICIYD  610 (893)
T ss_pred             ccEEEEE
Confidence            9999874

>KOG0319|consensus

Probab=100.00  E-value=2.3e-37  Score=273.15  Aligned_cols=293  Identities=25%  Similarity=0.382  Sum_probs=240.9

Q ss_pred             EEeEEecCccCcEEEEEEcCCCC--eEEEEeCCCeEEEEeCCCCCe-eEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSR--NLVSASQDGKLIVWDSYTTNK-VHAIPLRSSWVMTCAYAPSGSFVACGGLDNICS  122 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~  122 (340)
                      -..+.|+||.+.|.++.|+|+-+  .|++|+.|+++++||+.+... ++.+..|.+.|.+++|++|+.-+++++.|+.+.
T Consensus       138 ~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~  217 (775)
T KOG0319|consen  138 YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVII  217 (775)
T ss_pred             EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEE
Confidence            45688999999999999999754  488999999999999985554 778889999999999999999999999999999


Q ss_pred             EEEccCCCC----------------------c--e---------------------------------------------
Q psy15421        123 IYSLKTREG----------------------N--V---------------------------------------------  133 (340)
Q Consensus       123 i~~~~~~~~----------------------~--~---------------------------------------------  133 (340)
                      +||+...+.                      +  .                                             
T Consensus       218 vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l  297 (775)
T KOG0319|consen  218 VWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLL  297 (775)
T ss_pred             EeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceE
Confidence            998641100                      0  0                                             


Q ss_pred             ---------------------------------------------------EE-------EEeecCCCcceEEEEEcCCC
Q psy15421        134 ---------------------------------------------------RV-------SRELPGHTGYLSCCRFLDDN  155 (340)
Q Consensus       134 ---------------------------------------------------~~-------~~~~~~~~~~v~~~~~~~~~  155 (340)
                                                                         ++       -..+++|+..|.++.-..++
T Consensus       298 ~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g  377 (775)
T KOG0319|consen  298 LVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG  377 (775)
T ss_pred             EEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC
Confidence                                                               00       00234666666666533344


Q ss_pred             -eEEEEeCCCeEEEEECCCCc----eEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCee-----ee----
Q psy15421        156 -QIVTSSGDMSCALWDIETGQ----QCASFIGHTGDVMSLSLAPDM-RTFVSGACDASAKLWDIRDGSC-----KQ----  220 (340)
Q Consensus       156 -~l~~~~~d~~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~~~sg~~dg~i~~wd~~~~~~-----~~----  220 (340)
                       .|++|+.|.++++|.++.+.    ++....+|...|.+++++..+ .+|+++|.|+++++|++...+.     ..    
T Consensus       378 ~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~  457 (775)
T KOG0319|consen  378 DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY  457 (775)
T ss_pred             cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence             78899999999999885443    234456899999999997654 4789999999999999976221     11    


Q ss_pred             EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCC
Q psy15421        221 TFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM  300 (340)
Q Consensus       221 ~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~  300 (340)
                      ....|...|++|+++|+.+.+||||.|++.+||++.+...+..+.  ++.-+|.++.|+|..+.+++++.|.+|+||.+.
T Consensus       458 t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs--GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is  535 (775)
T KOG0319|consen  458 TERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS--GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS  535 (775)
T ss_pred             HHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee--CCccceEEEEeccccceeEeccCCceEEEEEec
Confidence            224699999999999999999999999999999999777777664  334479999999999999999999999999999


Q ss_pred             CceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       301 ~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +..+++++.||...|.-+.|-.+|..|+||+.||.|+|||
T Consensus       536 ~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn  575 (775)
T KOG0319|consen  536 TFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN  575 (775)
T ss_pred             cceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence            9999999999999999999999999999999999999997

>KOG0278|consensus

Probab=100.00  E-value=2.2e-38  Score=246.90  Aligned_cols=280  Identities=22%  Similarity=0.369  Sum_probs=248.3

Q ss_pred             EecCccCcEEEEEEcC---CCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         50 TLRGHLAKIYAMHWGS---DSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        50 ~~~~h~~~v~~~~~s~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      +-.||..+|..++|+|   +|-+|+|++.|+.=-+-+-.++..+.++.+|.++|.+.....+....|+++.|-+.++||.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            4579999999999975   7889999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCc-eEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQ-QCASFIGHTGDVMSLSLAPDMRTFVSGAC  204 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~sg~~  204 (340)
                      -+++....     ..|.-.|..+.|..+ +.|++|+.+..++++|++..+ +...+.+|.+.|..+-|+...+.+++.+.
T Consensus        89 ~tgdelhs-----f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad  163 (334)
T KOG0278|consen   89 VTGDELHS-----FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD  163 (334)
T ss_pred             hhhhhhhh-----hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc
Confidence            87764322     247777889999765 679999999999999998754 45678899999999999999999999999


Q ss_pred             CCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcE
Q psy15421        205 DASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRL  284 (340)
Q Consensus       205 dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
                      |++||+||.+++..++++. ...+|+++.++++|+++.++ .-+.|++||.++...++.+   ...+.|.+...+|+..+
T Consensus       164 d~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~---k~P~nV~SASL~P~k~~  238 (334)
T KOG0278|consen  164 DKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSY---KMPCNVESASLHPKKEF  238 (334)
T ss_pred             CCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeec---cCccccccccccCCCce
Confidence            9999999999999988886 45689999999999766555 4678999999988777655   33456899999999999


Q ss_pred             EEEEeCCCcEEEEeCCCceeeeee-ccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        285 LLAGYDDFNCNVWDSMKTERAGIL-AGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       285 l~~g~~d~~i~iw~~~~~~~~~~~-~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      +++|+.|+.++-||-.+++.+..+ .+|-++|-||.|||||...+|||.||+||||
T Consensus       239 fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW  294 (334)
T KOG0278|consen  239 FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW  294 (334)
T ss_pred             EEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence            999999999999999999988886 8999999999999999999999999999999

>KOG0281|consensus

Probab=100.00  E-value=1e-38  Score=259.51  Aligned_cols=268  Identities=23%  Similarity=0.393  Sum_probs=229.3

Q ss_pred             ccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCce
Q psy15421         54 HLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNV  133 (340)
Q Consensus        54 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~  133 (340)
                      ..+.|+|+.+  |+..++||..|.+|+|||..+..++..+.+|.+.|.|+.|.  .+.+++|+.|.+|++||+.+++   
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge---  268 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE---  268 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc---
Confidence            3568999997  55689999999999999999999999999999999998875  5699999999999999999875   


Q ss_pred             EEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCce---EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q psy15421        134 RVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQ---CASFIGHTGDVMSLSLAPDMRTFVSGACDASAKL  210 (340)
Q Consensus       134 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~  210 (340)
                       +..++-+|...|..+.|+ ++++++++.|.++.+||+.....   ...+.+|...|+.+.|+  .+++++++.|.+|++
T Consensus       269 -~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikv  344 (499)
T KOG0281|consen  269 -PLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV  344 (499)
T ss_pred             -hhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEE
Confidence             455677899999988884 67899999999999999976542   23567899999999985  569999999999999


Q ss_pred             EECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeC
Q psy15421        211 WDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYD  290 (340)
Q Consensus       211 wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~  290 (340)
                      |++.++++++++.+|...|.|+.+.  ++.+++||+|.+|++||+..+..+..+.  ++..-|.++.|  +.+.+++|..
T Consensus       345 W~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLe--GHEeLvRciRF--d~krIVSGaY  418 (499)
T KOG0281|consen  345 WSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE--GHEELVRCIRF--DNKRIVSGAY  418 (499)
T ss_pred             Eeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHh--chHHhhhheee--cCceeeeccc
Confidence            9999999999999999999888765  8899999999999999999988776553  22233788888  4689999999


Q ss_pred             CCcEEEEeCCCce---------eeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        291 DFNCNVWDSMKTE---------RAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       291 d~~i~iw~~~~~~---------~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ||+|++||+....         ++..+..|.+.|..+.|.  ...++++++|.+|.|||
T Consensus       419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd  475 (499)
T KOG0281|consen  419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD  475 (499)
T ss_pred             cceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence            9999999986653         234566899999999884  45899999999999997

>KOG0318|consensus

Probab=100.00  E-value=6.5e-36  Score=254.81  Aligned_cols=285  Identities=17%  Similarity=0.290  Sum_probs=244.0

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCe--eEEeeCCCCcEEEEEECCCCCEEEEEeCC----CeE
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNK--VHAIPLRSSWVMTCAYAPSGSFVACGGLD----NIC  121 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~i~~v~~~~~~~~l~~~~~d----~~v  121 (340)
                      ...+.+|..+++-..|+|.|.+++||...|.|||||....+.  ..+++.-.++|..+.|+++++++++.+..    +.+
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~  131 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV  131 (603)
T ss_pred             eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence            345779999999999999999999999999999999876443  35667778899999999999999887755    345


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEE
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTF  199 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  199 (340)
                      ..||..+.      ..++.+|...++++.|.+.  -++++++.|++|.+|+-..-+--..+..|...|.|+.|+||+.+|
T Consensus       132 F~~DSG~S------vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~F  205 (603)
T KOG0318|consen  132 FLWDSGNS------VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRF  205 (603)
T ss_pred             EEecCCCc------cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeE
Confidence            66664332      2456799999999998654  479999999999999887666666777899999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCeeeeEec---CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCc-ccceEE
Q psy15421        200 VSGACDASAKLWDIRDGSCKQTFP---GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNI-ICGITS  275 (340)
Q Consensus       200 ~sg~~dg~i~~wd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-~~~i~~  275 (340)
                      ++.+.||+|.+||=.+++.+..+.   +|.+.|.+++|+||+..|+|+|.|+++||||+.+.+.+.++..... ......
T Consensus       206 at~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG  285 (603)
T KOG0318|consen  206 ATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVG  285 (603)
T ss_pred             EEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEE
Confidence            999999999999999999988887   8999999999999999999999999999999998887776653322 122334


Q ss_pred             EEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       276 ~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +.|.  ...|++-+-+|+|.+++....+.+..+.||...|++|..+||+.+|.|||.||.|.-|+
T Consensus       286 ~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~  348 (603)
T KOG0318|consen  286 CLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD  348 (603)
T ss_pred             EEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence            5665  56788889999999999998899999999999999999999999999999999999996

>KOG0288|consensus

Probab=100.00  E-value=1.2e-37  Score=258.26  Aligned_cols=290  Identities=17%  Similarity=0.351  Sum_probs=248.9

Q ss_pred             eeeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC--eeEEeeCCCCcEEEEEECCCCCEEEEEeCCCe
Q psy15421         43 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN--KVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI  120 (340)
Q Consensus        43 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~  120 (340)
                      ++.+....+..|.++|..+.|-++...|++|+.|..|++|++...+  .+.++.+..+.|..+.|.++++++++++.|+.
T Consensus       163 lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~  242 (459)
T KOG0288|consen  163 LPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKN  242 (459)
T ss_pred             cchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCc
Confidence            3445556788999999999999998999999999999999987666  55677777788999999999999999999999


Q ss_pred             EEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEE
Q psy15421        121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTF  199 (340)
Q Consensus       121 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  199 (340)
                      +++|++...    +...++.+|+..|.++.|.... .+++++.|.++++||+....+..++.. .+.+..+...  ...+
T Consensus       243 ~r~Wnvd~~----r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~  315 (459)
T KOG0288|consen  243 LRLWNVDSL----RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDV  315 (459)
T ss_pred             eeeeeccch----hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceee
Confidence            999998754    3456788999999999986543 499999999999999998766655442 3345555555  4468


Q ss_pred             EEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcc--cceEEEE
Q psy15421        200 VSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNII--CGITSVA  277 (340)
Q Consensus       200 ~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~--~~i~~~~  277 (340)
                      ++|..|++|++||+++..+..+.+.++ .|+++..++++..+.+++.|.++++.|+++......+......  +..+.+.
T Consensus       316 ~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv  394 (459)
T KOG0288|consen  316 ISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV  394 (459)
T ss_pred             eecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence            899999999999999999999988765 8999999999999999999999999999998877777654433  3488999


Q ss_pred             EcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCc--ceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDN--RVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       278 ~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~--~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |||++.|+++|+.||.|+||+..++++...+.....  .|++++|+|.|..|++++.++.+.+|.
T Consensus       395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            999999999999999999999999999888875544  599999999999999999999999994

>KOG0285|consensus

Probab=100.00  E-value=1e-36  Score=248.65  Aligned_cols=242  Identities=24%  Similarity=0.464  Sum_probs=222.1

Q ss_pred             EEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEE
Q psy15421         91 HAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALW  169 (340)
Q Consensus        91 ~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iw  169 (340)
                      ..+++|.++|.++++.|.+..|++|+.|++++|||+.++.    ...++.+|...|..+.+++. -++++++.|++|+.|
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~----LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ----LKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe----EEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence            3456899999999999999999999999999999998863    55678899999999998765 478999999999999


Q ss_pred             ECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCc
Q psy15421        170 DIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDAT  249 (340)
Q Consensus       170 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~  249 (340)
                      |++.++.++.+.+|-+.|.|++.+|.-..+++|+.|.++|+||+++...+..+.||..+|..|.+.|....+++||.|++
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t  300 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST  300 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999899999999999


Q ss_pred             EEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEE
Q psy15421        250 CRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVAT  329 (340)
Q Consensus       250 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s  329 (340)
                      |++||++.++....+.+.+  ..+.+++.+|....+|+++.|. |+-|++..++.+..+.+|...|++++...|| ++++
T Consensus       301 vrlWDl~agkt~~tlt~hk--ksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~  376 (460)
T KOG0285|consen  301 VRLWDLRAGKTMITLTHHK--KSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS  376 (460)
T ss_pred             EEEeeeccCceeEeeeccc--ceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEE
Confidence            9999999888776665443  3589999999999999999884 9999999999999999999999999999888 7899


Q ss_pred             eeCCCcEEecC
Q psy15421        330 GSWDSFLRIWN  340 (340)
Q Consensus       330 ~s~D~~i~iW~  340 (340)
                      |+++|.|-.||
T Consensus       377 G~dng~~~fwd  387 (460)
T KOG0285|consen  377 GGDNGSIMFWD  387 (460)
T ss_pred             cCCceEEEEEe
Confidence            99999999997

>KOG0284|consensus

Probab=100.00  E-value=4.7e-38  Score=260.25  Aligned_cols=245  Identities=23%  Similarity=0.400  Sum_probs=215.5

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLR-SSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      ..+++|.++|.++.|++++.+++||+.+|.|++|+..-.. +..++.| ...|.+++|+|+...|++++.|++++|||..
T Consensus       132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~  210 (464)
T KOG0284|consen  132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR  210 (464)
T ss_pred             HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence            4478999999999999999999999999999999865433 4444444 4889999999999999999999999999987


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDA  206 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg  206 (340)
                      ....    .+.+.+|.-.|.++.|++. +.+++++.|..|++||.++++++.++.+|+..|+.+.|+|++++|+|+|.|.
T Consensus       211 ~~ke----e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~  286 (464)
T KOG0284|consen  211 MPKE----ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ  286 (464)
T ss_pred             CCch----hheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence            6542    3445799999999999876 5788999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEECCCCeeeeEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEE
Q psy15421        207 SAKLWDIRDGSCKQTFPGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLL  285 (340)
Q Consensus       207 ~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
                      .++++|+++-+.++.+++|...++++.|+|- ...|.+|+.||.|..|.+....++...+ ..+...|.+++|+|-|.+|
T Consensus       287 ~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil  365 (464)
T KOG0284|consen  287 SCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHIL  365 (464)
T ss_pred             eEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeE
Confidence            9999999987778899999999999999995 5689999999999999988555555443 2344569999999999999


Q ss_pred             EEEeCCCcEEEEeC
Q psy15421        286 LAGYDDFNCNVWDS  299 (340)
Q Consensus       286 ~~g~~d~~i~iw~~  299 (340)
                      ++|+.|.++++|..
T Consensus       366 ~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  366 ATGSNDRTVRFWTR  379 (464)
T ss_pred             eecCCCcceeeecc
Confidence            99999999999974

>KOG0295|consensus

Probab=100.00  E-value=1.2e-36  Score=248.64  Aligned_cols=245  Identities=25%  Similarity=0.442  Sum_probs=220.4

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCC-CCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYT-TNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      +.|+||.+.|.+++|+..|++++++++|=.+++||..+ .+++..+.+|...|.++.|-|.|.++++++.|++|+.|++.
T Consensus       144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~  223 (406)
T KOG0295|consen  144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD  223 (406)
T ss_pred             hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc
Confidence            56899999999999999999999999999999999876 45667788999999999999999999999999999999998


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCCe-EEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCC-----------
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPD-----------  195 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----------  195 (340)
                      ++.    ...++++|...|..+....++. +++++.|.++++|-+.++++...+..|.-+|-+++|.|.           
T Consensus       224 tg~----cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~  299 (406)
T KOG0295|consen  224 TGY----CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATG  299 (406)
T ss_pred             cce----eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccC
Confidence            874    5577899999999888877765 667888999999999999887888889999999999763           


Q ss_pred             ----CCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCccc
Q psy15421        196 ----MRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIIC  271 (340)
Q Consensus       196 ----~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~  271 (340)
                          ++++.+++.|++||+||+.++.|+.++.+|...|..++|+|.|+||+|+..|+++++||+++.+....+....+  
T Consensus       300 ~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--  377 (406)
T KOG0295|consen  300 STNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--  377 (406)
T ss_pred             CCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--
Confidence                25889999999999999999999999999999999999999999999999999999999999888876653322  


Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEEEeC
Q psy15421        272 GITSVAFSRSGRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       272 ~i~~~~~s~~~~~l~~g~~d~~i~iw~~  299 (340)
                      -++++.|+.+..++++|+-|.++++|+.
T Consensus       378 fvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  378 FVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eeEEEecCCCCceEEeccccceeeeeec
Confidence            3899999999999999999999999975

>KOG0266|consensus

Probab=100.00  E-value=1.5e-35  Score=268.51  Aligned_cols=241  Identities=29%  Similarity=0.553  Sum_probs=213.9

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEEC-CCC
Q psy15421         97 SSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDI-ETG  174 (340)
Q Consensus        97 ~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~-~~~  174 (340)
                      ...|.++.|+++|+++++++.++.+++|+......  .....+.+|...|..+.|++++ .+++++.|+++++||+ ..+
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~  236 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG  236 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC
Confidence            56789999999999999999999999999844321  2445568899999999998876 7889999999999999 555


Q ss_pred             ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q psy15421        175 QQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFD  254 (340)
Q Consensus       175 ~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd  254 (340)
                      ..+.++.+|...|++++|+|+++++++|+.|++|++||++++++...+++|.+.|++++|++++.+|++++.|+.|++||
T Consensus       237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd  316 (456)
T KOG0266|consen  237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWD  316 (456)
T ss_pred             eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCcE--EEEee-cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcc---eEEEEECCCCCEEE
Q psy15421        255 IRADQE--LAMYS-HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNR---VSCLGVTEDGMAVA  328 (340)
Q Consensus       255 ~~~~~~--~~~~~-~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~---i~~~~~s~d~~~l~  328 (340)
                      +.++..  +..+. +.... .++++.|+|+++++++++.|+.+++||+..+.....+.+|...   +.+...++.+.+++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  395 (456)
T KOG0266|consen  317 LETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIY  395 (456)
T ss_pred             CCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEE
Confidence            998873  33332 23333 6899999999999999999999999999999999999999874   55556688999999


Q ss_pred             EeeCCCcEEecC
Q psy15421        329 TGSWDSFLRIWN  340 (340)
Q Consensus       329 s~s~D~~i~iW~  340 (340)
                      +|+.|+.|.+||
T Consensus       396 sg~~d~~v~~~~  407 (456)
T KOG0266|consen  396 SGSEDGSVYVWD  407 (456)
T ss_pred             EEeCCceEEEEe
Confidence            999999999996

>KOG0315|consensus

Probab=100.00  E-value=8e-35  Score=226.82  Aligned_cols=269  Identities=16%  Similarity=0.295  Sum_probs=223.7

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC--eeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN--KVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSI  123 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i  123 (340)
                      +..++++--...|..+..+||++.|++++. ..||+||+.+++  .+.++.+|...|.+|.|..+|+.+++|+.||+++|
T Consensus        31 ~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kI  109 (311)
T KOG0315|consen   31 ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKI  109 (311)
T ss_pred             eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEE
Confidence            455677766678999999999999988776 579999998765  47889999999999999999999999999999999


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEec-CCCCeEEEEEcCCCCEEEE
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIG-HTGDVMSLSLAPDMRTFVS  201 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~s  201 (340)
                      ||++...    .++.+ .|..+|+++..+++ ..|+++..+|.|++||+........+.. -...+.++.+.||+..++.
T Consensus       110 WdlR~~~----~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a  184 (311)
T KOG0315|consen  110 WDLRSLS----CQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAA  184 (311)
T ss_pred             EeccCcc----cchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEE
Confidence            9998742    33333 46688988887765 5799999999999999988765554433 3456899999999999999


Q ss_pred             EeCCCcEEEEECCCCe------eeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEE
Q psy15421        202 GACDASAKLWDIRDGS------CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITS  275 (340)
Q Consensus       202 g~~dg~i~~wd~~~~~------~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~  275 (340)
                      +...|...+|++-..+      ++..++.|++-+....++||+++||++|.|++++||+....-. .........--+..
T Consensus       185 ~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k-le~~l~gh~rWvWd  263 (311)
T KOG0315|consen  185 ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK-LELVLTGHQRWVWD  263 (311)
T ss_pred             ecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee-eEEEeecCCceEEe
Confidence            9999999999986543      4556789999999999999999999999999999999887611 11222222234889


Q ss_pred             EEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEEC
Q psy15421        276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVT  321 (340)
Q Consensus       276 ~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s  321 (340)
                      ++||.||.||++|+.|+.+++|+...++.+..+.+|.....|++..
T Consensus       264 c~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  264 CAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             eeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            9999999999999999999999999999999999999888887653

>KOG0292|consensus

Probab=100.00  E-value=9.5e-36  Score=267.50  Aligned_cols=285  Identities=21%  Similarity=0.378  Sum_probs=246.8

Q ss_pred             EecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q psy15421         50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTR  129 (340)
Q Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~  129 (340)
                      .|.....+|..++|+|..++++++-..|.|++||..=+..+..+..|.++|..+.|+|...++++||.|-+|++|+..+.
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r   83 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR   83 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence            35566778999999999999999999999999999888888999999999999999999999999999999999999775


Q ss_pred             CCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q psy15421        130 EGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASA  208 (340)
Q Consensus       130 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i  208 (340)
                          +...++.+|-.+|..+.|+.. --+++++.|.+|+||+..+++++..+.+|.-.|+|..|+|...+++++|-|.+|
T Consensus        84 ----rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTV  159 (1202)
T KOG0292|consen   84 ----RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTV  159 (1202)
T ss_pred             ----eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceE
Confidence                466778899999999999765 468999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCC--------C-------------------e--eeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCc
Q psy15421        209 KLWDIRD--------G-------------------S--CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ  259 (340)
Q Consensus       209 ~~wd~~~--------~-------------------~--~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  259 (340)
                      |+||+.-        +                   .  ....++||...|+-++|+|.-..++||+.|..|++|.+...+
T Consensus       160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK  239 (1202)
T KOG0292|consen  160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK  239 (1202)
T ss_pred             EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence            9999731        1                   0  123567999999999999999999999999999999987654


Q ss_pred             EEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        260 ELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       260 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      ....-...++...|+++.|+|...++++.+.|++|++||..+...+..++.-.+.-++++.+|..++++ +++|+-+.|+
T Consensus       240 aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfA-AgHDsGm~VF  318 (1202)
T KOG0292|consen  240 AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFA-AGHDSGMIVF  318 (1202)
T ss_pred             ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceee-eecCCceEEE
Confidence            322212234445699999999999999999999999999988888888876678889999999998666 5566655543

>KOG0313|consensus

Probab=100.00  E-value=1.6e-35  Score=243.32  Aligned_cols=281  Identities=22%  Similarity=0.355  Sum_probs=231.5

Q ss_pred             CccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCC---CCEEEEEeCCCeEEEEEccCC
Q psy15421         53 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS---GSFVACGGLDNICSIYSLKTR  129 (340)
Q Consensus        53 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~---~~~l~~~~~d~~v~i~~~~~~  129 (340)
                      -|.+-|.++...  +++|+||+.||++++||. .|+....+.+|.++|.++++-..   ...|++++.|.++++|.+..+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            467777777766  679999999999999996 58888999999999998776533   346999999999999999887


Q ss_pred             CCceEEEEeecCCCcceEEEEEcC-CCeEEEEeCCCeEEEEECCC-------------------------CceEEEEecC
Q psy15421        130 EGNVRVSRELPGHTGYLSCCRFLD-DNQIVTSSGDMSCALWDIET-------------------------GQQCASFIGH  183 (340)
Q Consensus       130 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~v~iwd~~~-------------------------~~~~~~~~~~  183 (340)
                      +..........||...|.++...+ +.++++++.|.++++|+..+                         +.++..+.+|
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH  259 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH  259 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence            665555555569999999988655 45799999999999999321                         1234567899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcE-EE
Q psy15421        184 TGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQE-LA  262 (340)
Q Consensus       184 ~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~  262 (340)
                      ..+|.++.|++ ...+++++.|.+|+.||+.++.++-.+.+ ..++++++.+|....+++|+.|..|++||-+++.- +.
T Consensus       260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v  337 (423)
T KOG0313|consen  260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV  337 (423)
T ss_pred             ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCcee
Confidence            99999999998 67899999999999999999988777764 46799999999999999999999999999886431 11


Q ss_pred             EeecCCcccceEEEEEcCCCc-EEEEEeCCCcEEEEeCCCce-eeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        263 MYSHDNIICGITSVAFSRSGR-LLLAGYDDFNCNVWDSMKTE-RAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       263 ~~~~~~~~~~i~~~~~s~~~~-~l~~g~~d~~i~iw~~~~~~-~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      .....++..-|.++.|+|... +|++|+.|+++++||.++.+ ++..+.+|.+.|.++.|..-+ .|+|||.|.+|+|.
T Consensus       338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~-~IvSGGaD~~l~i~  415 (423)
T KOG0313|consen  338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG-LIVSGGADNKLRIF  415 (423)
T ss_pred             EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCc-eEEeccCcceEEEe
Confidence            111222333588999999866 56789999999999998877 899999999999999998654 79999999999986

>KOG0300|consensus

Probab=100.00  E-value=5.7e-36  Score=241.02  Aligned_cols=291  Identities=25%  Similarity=0.414  Sum_probs=248.5

Q ss_pred             eEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q psy15421         45 MRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIY  124 (340)
Q Consensus        45 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~  124 (340)
                      .+..+.|.||.+.|+.++.....+.+.+++.|++.+||.+++++++..+.+|.+.|.++.|++.+.++++++.|++..||
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence            34456789999999999998888899999999999999999999999999999999999999999999999999999999


Q ss_pred             Ecc------CC----------------------C--------CceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEE
Q psy15421        125 SLK------TR----------------------E--------GNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCA  167 (340)
Q Consensus       125 ~~~------~~----------------------~--------~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~  167 (340)
                      ...      ..                      +        ..-.+...+.+|...|.++.|..+ .+++++++|.+-.
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn  297 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN  297 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence            722      10                      0        001234456789999999988765 5799999999999


Q ss_pred             EEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeeeEecCCCCCeEEEEEecCCCEEEEEeC
Q psy15421        168 LWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG-SCKQTFPGHESDINAVTFFPNGWAFATGSD  246 (340)
Q Consensus       168 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~  246 (340)
                      +||+++++.+..+.+|..+.+.++-+|..+++++.+.|-+.++||++.. ..+..|+||...|+++.|..+. .+++|+.
T Consensus       298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD  376 (481)
T KOG0300|consen  298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD  376 (481)
T ss_pred             eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC
Confidence            9999999999999999999999999999999999999999999999854 3467899999999999998765 7899999


Q ss_pred             CCcEEEEeCcCCc-EEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeee-----ccCCcceEEEEE
Q psy15421        247 DATCRLFDIRADQ-ELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGIL-----AGHDNRVSCLGV  320 (340)
Q Consensus       247 d~~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~-----~~h~~~i~~~~~  320 (340)
                      |.+|++||+++.+ ++..+...   .+++.++.+..+++++.--++..|++||+ ++..+..+     .+|...|.|.+|
T Consensus       377 DrTvKvWdLrNMRsplATIRtd---S~~NRvavs~g~~iIAiPhDNRqvRlfDl-nG~RlaRlPrtsRqgHrRMV~c~AW  452 (481)
T KOG0300|consen  377 DRTVKVWDLRNMRSPLATIRTD---SPANRVAVSKGHPIIAIPHDNRQVRLFDL-NGNRLARLPRTSRQGHRRMVTCCAW  452 (481)
T ss_pred             CceEEEeeeccccCcceeeecC---CccceeEeecCCceEEeccCCceEEEEec-CCCccccCCcccccccceeeeeeec
Confidence            9999999998653 45555433   35888999999999999999999999996 45444433     589999999999


Q ss_pred             CCCC--CEEEEeeCCCcEEecC
Q psy15421        321 TEDG--MAVATGSWDSFLRIWN  340 (340)
Q Consensus       321 s~d~--~~l~s~s~D~~i~iW~  340 (340)
                      ..+.  .-|++|+.|..+.=|+
T Consensus       453 ~eehp~cnLftcGFDR~v~gW~  474 (481)
T KOG0300|consen  453 LEEHPACNLFTCGFDRMVAGWK  474 (481)
T ss_pred             cccCcccccccccccceeeeeE
Confidence            8765  3589999999998884

>KOG0275|consensus

Probab=100.00  E-value=1.2e-36  Score=245.63  Aligned_cols=283  Identities=20%  Similarity=0.335  Sum_probs=247.4

Q ss_pred             CccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeE--------EeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q psy15421         53 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVH--------AIPLRSSWVMTCAYAPSGSFVACGGLDNICSIY  124 (340)
Q Consensus        53 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~--------~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~  124 (340)
                      |...-+.|..|+||+++|++|+-||-|.+||..+++...        .+..+..+|.|+.|+.|..++|+|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            556678899999999999999999999999998887543        234567889999999999999999999999999


Q ss_pred             EccCCCCceEEEEee-cCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEE
Q psy15421        125 SLKTREGNVRVSREL-PGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSG  202 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg  202 (340)
                      .+.++..    .+.+ .+|+..|.++.|+.+ .++++++.|.++++.-+++|+.+..+.+|.+.|+...|.++|..++++
T Consensus       291 ri~tG~C----lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa  366 (508)
T KOG0275|consen  291 RIETGQC----LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA  366 (508)
T ss_pred             EEecchH----HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence            9988752    2333 489999999999865 589999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEECCCCeeeeEecCC--CCCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCCcEEEEeec-CCcccceEEEEE
Q psy15421        203 ACDASAKLWDIRDGSCKQTFPGH--ESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQELAMYSH-DNIICGITSVAF  278 (340)
Q Consensus       203 ~~dg~i~~wd~~~~~~~~~~~~h--~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~  278 (340)
                      +.||+|++|+..+.+|..+++..  ..+|+++...|. ...++.+....+++|-++. ++.+..+.. ........++..
T Consensus       367 SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~l  445 (508)
T KOG0275|consen  367 SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAIL  445 (508)
T ss_pred             cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEe
Confidence            99999999999999999888643  457888888874 5689999999999999885 455555543 222344667889


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        279 SRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       279 s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +|.|.++.+.+.|+.++.|...++....++.-|+..|..++-+|-.+.|||-|.||.+++|.
T Consensus       446 SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999994

>KOG0289|consensus

Probab=100.00  E-value=2.1e-34  Score=240.38  Aligned_cols=280  Identities=20%  Similarity=0.321  Sum_probs=245.2

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceE
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVR  134 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~  134 (340)
                      ...+.++...|..+.+++|+.|..+.++|....+.+.++++|...|..+.|+|+...+++++.|..|+||......    
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s----  294 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS----  294 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc----
Confidence            3568888888887899999999999999999999999999999999999999999999999999999999986543    


Q ss_pred             EEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q psy15421        135 VSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIG--HTGDVMSLSLAPDMRTFVSGACDASAKLW  211 (340)
Q Consensus       135 ~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~sg~~dg~i~~w  211 (340)
                      .......|...|..+..++. .+|++++.|++..+.|++++..+.....  ..-.+.+.+|+|||..|.+|..||.|++|
T Consensus       295 ~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiw  374 (506)
T KOG0289|consen  295 EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIW  374 (506)
T ss_pred             CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEE
Confidence            22334578899988877655 5899999999999999999987766543  22358999999999999999999999999


Q ss_pred             ECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCC
Q psy15421        212 DIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD  291 (340)
Q Consensus       212 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d  291 (340)
                      |+.++.....|++|.++|..++|+.+|.++|+++.|+.|++||+|..+....+...... ++.++.|.+.|++|+.++.|
T Consensus       375 dlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~~  453 (506)
T KOG0289|consen  375 DLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTYLGIAGSD  453 (506)
T ss_pred             EcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCeEEeecce
Confidence            99999999999999999999999999999999999999999999987776666554433 69999999999999999998


Q ss_pred             CcEEEEeC--CCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        292 FNCNVWDS--MKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       292 ~~i~iw~~--~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      -.|++++.  .++.++..+.-|.+..+++.|....++++++|+|..+++.
T Consensus       454 l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  454 LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             eEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence            77777773  3566778888899999999999999999999999998875

>KOG0276|consensus

Probab=100.00  E-value=1.6e-34  Score=250.99  Aligned_cols=258  Identities=19%  Similarity=0.315  Sum_probs=227.5

Q ss_pred             cCCCccccceeeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEE
Q psy15421         34 TGNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVA  113 (340)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~  113 (340)
                      .+++..+....+...+.|.--.-+|.+..|-+..+++++|+.|..|+|+|..+.++++.+.+|++.|.+++.+|.-.+++
T Consensus        34 nG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vL  113 (794)
T KOG0276|consen   34 NGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVL  113 (794)
T ss_pred             cCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEE
Confidence            34555555445556677887788999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEE
Q psy15421        114 CGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLS  191 (340)
Q Consensus       114 ~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~  191 (340)
                      +++.|-+|++|+..   ..+....++.+|+.+|..++|.|.  +.+++++-|++|++|.+.+..+..++.+|...|+|++
T Consensus       114 tsSDDm~iKlW~we---~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vd  190 (794)
T KOG0276|consen  114 TSSDDMTIKLWDWE---NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVD  190 (794)
T ss_pred             ecCCccEEEEeecc---CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEE
Confidence            99999999999984   456677889999999999999754  6899999999999999999889999999999999999


Q ss_pred             EcCCC--CEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCc
Q psy15421        192 LAPDM--RTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNI  269 (340)
Q Consensus       192 ~~~~~--~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~  269 (340)
                      +-+.+  .+++||+.|.+|++||.++..|++++.||...|..+.|+|.=..++|||.||++|||.-.+.+....+...  
T Consensus       191 yy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--  268 (794)
T KOG0276|consen  191 YYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--  268 (794)
T ss_pred             eccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--
Confidence            98744  69999999999999999999999999999999999999999999999999999999998776554433221  


Q ss_pred             ccceEEEEEcCCCcEEEEEeCCCcEEE
Q psy15421        270 ICGITSVAFSRSGRLLLAGYDDFNCNV  296 (340)
Q Consensus       270 ~~~i~~~~~s~~~~~l~~g~~d~~i~i  296 (340)
                      ..++.|++-.+.+..++.|.+.|.|.+
T Consensus       269 leRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  269 LERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             CceEEEEeecCCCCeEEEeccCCcEEE
Confidence            235899999999999999999987754

>KOG0268|consensus

Probab=100.00  E-value=4.3e-36  Score=245.30  Aligned_cols=279  Identities=18%  Similarity=0.286  Sum_probs=224.9

Q ss_pred             EecCccCcEEEEEEcCCC-CeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccC
Q psy15421         50 TLRGHLAKIYAMHWGSDS-RNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKT  128 (340)
Q Consensus        50 ~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~  128 (340)
                      .|.||.+.|.+++=+|.. ..++||+.||.|+|||+.+.++..++..|.+.|..+++..  ..++++|.|++|+.|.+..
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~  138 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG  138 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC
Confidence            468999999999999977 7899999999999999999999999999999999999887  7788999999999999864


Q ss_pred             CCCceEEEEeecCCCcceEEEEEc-CCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC-EEEEEeCCC
Q psy15421        129 REGNVRVSRELPGHTGYLSCCRFL-DDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR-TFVSGACDA  206 (340)
Q Consensus       129 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~sg~~dg  206 (340)
                      .     ...++.+.... ..+... .++.+++++  ..|.|||.+-..+++.+.--.+.+.++.|+|... .|++|+.|+
T Consensus       139 ~-----p~~tilg~s~~-~gIdh~~~~~~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr  210 (433)
T KOG0268|consen  139 P-----PLHTILGKSVY-LGIDHHRKNSVFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR  210 (433)
T ss_pred             C-----cceeeeccccc-cccccccccccccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence            2     23333333322 222222 234565554  5699999988888888887778899999999765 556777999


Q ss_pred             cEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEE
Q psy15421        207 SAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLL  286 (340)
Q Consensus       207 ~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  286 (340)
                      .|.+||++++.+++.+. -.-.-+.|+|+|.+-.|++|+.|-.++.||++..+.... -+..+...|..+.|||.|+-++
T Consensus       211 sIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~-v~~dhvsAV~dVdfsptG~Efv  288 (433)
T KOG0268|consen  211 SIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLN-VHKDHVSAVMDVDFSPTGQEFV  288 (433)
T ss_pred             ceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccch-hhcccceeEEEeccCCCcchhc
Confidence            99999999998876654 234568899999888999999999999999986543222 2455667899999999999999


Q ss_pred             EEeCCCcEEEEeCCCceeeeeec-cCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        287 AGYDDFNCNVWDSMKTERAGILA-GHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       287 ~g~~d~~i~iw~~~~~~~~~~~~-~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +|+.|.+|+||....+...-.+. .-...|.||.||-|.++++|||+|++||+|.
T Consensus       289 sgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk  343 (433)
T KOG0268|consen  289 SGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK  343 (433)
T ss_pred             cccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence            99999999999976554332221 1235799999999999999999999999994

>KOG0305|consensus

Probab=100.00  E-value=3e-34  Score=251.11  Aligned_cols=270  Identities=24%  Similarity=0.440  Sum_probs=231.4

Q ss_pred             EEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeec
Q psy15421         61 MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELP  140 (340)
Q Consensus        61 ~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~  140 (340)
                      ++|+..  .+++.+....|++|+..+++.......+...|+++.|+++|.+|++|..++.|.|||.....    ..+.+.
T Consensus       183 ldWss~--n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k----~~~~~~  256 (484)
T KOG0305|consen  183 LDWSSA--NVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK----KTRTLR  256 (484)
T ss_pred             hhcccC--CeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc----cccccc
Confidence            456632  24455666789999999988666555557889999999999999999999999999986543    334555


Q ss_pred             C-CCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q psy15421        141 G-HTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCAS-FIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC  218 (340)
Q Consensus       141 ~-~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~  218 (340)
                      + |...|.++.|. ...+.+|+.|+.|..+|++..+.... +.+|..+|+.+.|++|+.++++|+.|+.+.|||.....+
T Consensus       257 ~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p  335 (484)
T KOG0305|consen  257 GSHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP  335 (484)
T ss_pred             CCcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence            6 99999999986 56788899999999999998876555 788999999999999999999999999999999988888


Q ss_pred             eeEecCCCCCeEEEEEecC-CCEEEEE--eCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEE--EeCCCc
Q psy15421        219 KQTFPGHESDINAVTFFPN-GWAFATG--SDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLA--GYDDFN  293 (340)
Q Consensus       219 ~~~~~~h~~~v~~v~~~~~-~~~l~s~--s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--g~~d~~  293 (340)
                      ...+..|...|.+++|+|- ...||+|  +.|+.|++||..++..+.....   ...|.++.|++..+-|++  |..+..
T Consensus       336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~sthG~s~n~  412 (484)
T KOG0305|consen  336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLSTHGYSENQ  412 (484)
T ss_pred             cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEEecCCCCCc
Confidence            8899999999999999994 5688886  4599999999998877655432   335899999999876665  667889


Q ss_pred             EEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        294 CNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       294 i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |.||+..+.+.+..+.+|...|..+++||||..+++|+.|.++++|+
T Consensus       413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~  459 (484)
T KOG0305|consen  413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN  459 (484)
T ss_pred             EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence            99999999999999999999999999999999999999999999996

>KOG0306|consensus

Probab=100.00  E-value=7.3e-34  Score=251.48  Aligned_cols=300  Identities=21%  Similarity=0.301  Sum_probs=250.4

Q ss_pred             CCccccceeeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEE
Q psy15421         36 NMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACG  115 (340)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~  115 (340)
                      ++..++.+.-.-+.+|+||.+.|+..-|..+.++++|+|.|..|++||+.+..+..+.-.|...+..+++.+  +.++++
T Consensus       130 ~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~  207 (888)
T KOG0306|consen  130 DIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTA  207 (888)
T ss_pred             cEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEE
Confidence            333444344455678999999999999999899999999999999999999999989889998898888877  888889


Q ss_pred             eCCCeEEEEEccCCC-----------------------------------------------------------------
Q psy15421        116 GLDNICSIYSLKTRE-----------------------------------------------------------------  130 (340)
Q Consensus       116 ~~d~~v~i~~~~~~~-----------------------------------------------------------------  130 (340)
                      +.|.-+++|++....                                                                 
T Consensus       208 ~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~  287 (888)
T KOG0306|consen  208 GTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKL  287 (888)
T ss_pred             ecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHH
Confidence            999999999881000                                                                 


Q ss_pred             --------------------------------------------CceE-----------E------------------EE
Q psy15421        131 --------------------------------------------GNVR-----------V------------------SR  137 (340)
Q Consensus       131 --------------------------------------------~~~~-----------~------------------~~  137 (340)
                                                                  +...           .                  ..
T Consensus       288 k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i  367 (888)
T KOG0306|consen  288 KRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNI  367 (888)
T ss_pred             HHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCcccccccee
Confidence                                                        0000           0                  01


Q ss_pred             eecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q psy15421        138 ELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS  217 (340)
Q Consensus       138 ~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~  217 (340)
                      ++.+|...|..+++++++.++..+..+++++|+..+.+++.++..  +.+.+..|.|.++++++|...|.+.+||+.+..
T Consensus       368 ~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~  445 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASAS  445 (888)
T ss_pred             eeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence            234566777788888888777777889999999999999988865  378999999999999999999999999999999


Q ss_pred             eeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcC-------CcEEEEeec---CCcccceEEEEEcCCCcEEEE
Q psy15421        218 CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRA-------DQELAMYSH---DNIICGITSVAFSRSGRLLLA  287 (340)
Q Consensus       218 ~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~-------~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~  287 (340)
                      .+.+.++|.+.|++++..||++.+++||.|++|++||..-       .+.+-.+.+   -.....|.|+.+||||++|++
T Consensus       446 l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV  525 (888)
T KOG0306|consen  446 LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV  525 (888)
T ss_pred             hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE
Confidence            8889999999999999999999999999999999999642       111111111   122345899999999999999


Q ss_pred             EeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        288 GYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       288 g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      +--|.+|++|-+.+.+..-.+.||.=||.|+..|||++++++||.|.+|+||
T Consensus       526 sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW  577 (888)
T KOG0306|consen  526 SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW  577 (888)
T ss_pred             EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence            9999999999999999988999999999999999999999999999999999

>KOG0283|consensus

Probab=100.00  E-value=1.8e-34  Score=258.96  Aligned_cols=290  Identities=23%  Similarity=0.349  Sum_probs=210.9

Q ss_pred             eEEec-CccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCC----------CcEEEEEECC---CCC--E
Q psy15421         48 RRTLR-GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRS----------SWVMTCAYAP---SGS--F  111 (340)
Q Consensus        48 ~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------~~i~~v~~~~---~~~--~  111 (340)
                      .+.+. +|.+.|+++.|++||++|||||.|+.|+||.+...+....-..-.          +.+.-+.-++   .++  .
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            35567 999999999999999999999999999999876533211000000          0000000000   000  0


Q ss_pred             EEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEE
Q psy15421        112 VACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLS  191 (340)
Q Consensus       112 l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~  191 (340)
                      .-.+..... .+.+.....-...+.+.+.+|...|..+.|+.++.|++++.|.+|++|++...+++..| .|.+.|+|++
T Consensus       339 ~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVa  416 (712)
T KOG0283|consen  339 SRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVA  416 (712)
T ss_pred             cccccCCcc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEE
Confidence            111111111 11111111111234566789999999999999999999999999999999987776665 5999999999


Q ss_pred             EcC-CCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecC---
Q psy15421        192 LAP-DMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHD---  267 (340)
Q Consensus       192 ~~~-~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~---  267 (340)
                      |+| |.++|++|+-||.||||++...+.+ .+.....-|++++|.|||++.+.|+.+|.+++|++...+....+...   
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv-~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~  495 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKVV-DWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN  495 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCeeE-eehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence            999 6789999999999999999876644 34334478999999999999999999999999999877665443211   


Q ss_pred             --C-cccceEEEEEcCCCc-EEEEEeCCCcEEEEeCCCceeeeeeccCCcc--eEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        268 --N-IICGITSVAFSRSGR-LLLAGYDDFNCNVWDSMKTERAGILAGHDNR--VSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       268 --~-~~~~i~~~~~s~~~~-~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~--i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                        + ....|+.+.|.|... .+++.+.|..|||||..+.+.+..+.|+.+.  =....|+.||++|+++|.|..|+||+
T Consensus       496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~  574 (712)
T KOG0283|consen  496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK  574 (712)
T ss_pred             CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence              1 112599999987644 4777789999999999777777777776432  35678999999999999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.3e-32  Score=266.71  Aligned_cols=260  Identities=22%  Similarity=0.298  Sum_probs=211.8

Q ss_pred             CCeEEEEeCCCCCeeEE-----eeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCc---e-EEEEeecCCCcce
Q psy15421         76 DGKLIVWDSYTTNKVHA-----IPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGN---V-RVSRELPGHTGYL  146 (340)
Q Consensus        76 d~~i~iwd~~~~~~~~~-----~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~---~-~~~~~~~~~~~~v  146 (340)
                      +|.+++|+..+.+....     +..|...|.+++|+|++.++++|+.|+.|++|+.......   . .....+. +...+
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v  535 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL  535 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence            67888998776544333     3347888999999999999999999999999997532110   0 0111222 33467


Q ss_pred             EEEEEcC--CCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeeeEec
Q psy15421        147 SCCRFLD--DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAP-DMRTFVSGACDASAKLWDIRDGSCKQTFP  223 (340)
Q Consensus       147 ~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~sg~~dg~i~~wd~~~~~~~~~~~  223 (340)
                      .++.|.+  ...+++++.|++|++||+.+++.+..+.+|.+.|.+++|+| ++.++++|+.||+|++||++++.+...+.
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~  615 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK  615 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence            7777764  35789999999999999999998899999999999999997 78899999999999999999998888887


Q ss_pred             CCCCCeEEEEEe-cCCCEEEEEeCCCcEEEEeCcCCc-EEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCC
Q psy15421        224 GHESDINAVTFF-PNGWAFATGSDDATCRLFDIRADQ-ELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       224 ~h~~~v~~v~~~-~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~  301 (340)
                      .+ ..+.++.|. +++.+|++|+.|+.|++||++..+ ++..+  ..+...|.++.|. ++.+|++++.|++|++||...
T Consensus       616 ~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~--~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        616 TK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM--IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             cC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe--cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence            55 579999995 569999999999999999998654 23332  2333468999997 678999999999999999864


Q ss_pred             ------ceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        302 ------TERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       302 ------~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                            ..++..+.+|...+++++|+|++.+|++|+.|+.|++|+
T Consensus       692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~  736 (793)
T PLN00181        692 SISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH  736 (793)
T ss_pred             CccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence                  245678889999999999999999999999999999996

>KOG0277|consensus

Probab=100.00  E-value=5.5e-34  Score=222.79  Aligned_cols=277  Identities=22%  Similarity=0.353  Sum_probs=224.2

Q ss_pred             EEEEEcC--CCCeEEEE------eCCCeEEEEeCCCCCeeEEee--CCCCcEEEEEECCC-CCEEEEEeCCCeEEEEEcc
Q psy15421         59 YAMHWGS--DSRNLVSA------SQDGKLIVWDSYTTNKVHAIP--LRSSWVMTCAYAPS-GSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        59 ~~~~~s~--~~~~l~s~------~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~v~~~~~-~~~l~~~~~d~~v~i~~~~  127 (340)
                      +++.|||  ++++.++.      ...|++.|-++...+.+....  .-++.+..++|+++ .+.+++++.||.+++||..
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            6788988  34433332      256889999987555444332  33567899999985 6788999999999999965


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCC-CCEEEEEeC
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPD-MRTFVSGAC  204 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~sg~~  204 (340)
                      ....   +...+..|...|.++-|..-  ..++++++|++|++|+..-++.+.++.+|...|...+|+|. .++++++|.
T Consensus        92 ~~s~---Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg  168 (311)
T KOG0277|consen   92 MPSK---PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASG  168 (311)
T ss_pred             CCCc---chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccC
Confidence            5442   44556789999999988643  45888899999999999999999999999999999999995 568899999


Q ss_pred             CCcEEEEECCCCeeeeEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCcCCc-EEEEeecCCcccceEEEEEcCC-
Q psy15421        205 DASAKLWDIRDGSCKQTFPGHESDINAVTFFP-NGWAFATGSDDATCRLFDIRADQ-ELAMYSHDNIICGITSVAFSRS-  281 (340)
Q Consensus       205 dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~-  281 (340)
                      |+++++||++..-....++.|...+.|..|+. +...++||+.|+.|+.||++..+ ++..+  ..+...|..+.|||. 
T Consensus       169 d~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL--~gh~~AVRkvk~Sph~  246 (311)
T KOG0277|consen  169 DGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL--NGHGLAVRKVKFSPHH  246 (311)
T ss_pred             CceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee--cCCceEEEEEecCcch
Confidence            99999999987544455889999999999997 56789999999999999998654 34433  444557999999997 


Q ss_pred             CcEEEEEeCCCcEEEEeCCCce-eeeeeccCCcceEEEEECC-CCCEEEEeeCCCcEEecC
Q psy15421        282 GRLLLAGYDDFNCNVWDSMKTE-RAGILAGHDNRVSCLGVTE-DGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       282 ~~~l~~g~~d~~i~iw~~~~~~-~~~~~~~h~~~i~~~~~s~-d~~~l~s~s~D~~i~iW~  340 (340)
                      ..+|++++-|-+++|||.+..+ .+.+...|.+.|-.+.||+ ++.++|+++.|++++|||
T Consensus       247 ~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  247 ASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             hhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            4578899999999999987443 4556778999999999998 677999999999999997

>KOG0316|consensus

Probab=100.00  E-value=8.8e-34  Score=219.38  Aligned_cols=242  Identities=23%  Similarity=0.347  Sum_probs=211.0

Q ss_pred             eeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEc-CCCeEEEEeCCCeEE
Q psy15421         89 KVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL-DDNQIVTSSGDMSCA  167 (340)
Q Consensus        89 ~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~v~  167 (340)
                      ....+..++++|..+.|.-+|+|.++++.|+++++|+...+    ...++..+|...|...... ++.++++|++|..+.
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg----~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~   84 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG----ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQ   84 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc----ceeeeecCCCceeeeccccccccccccCCCCceEE
Confidence            45677888999999999999999999999999999997654    3567788888888776664 456899999999999


Q ss_pred             EEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eeeeEecCCCCCeEEEEEecCCCEEEEEe
Q psy15421        168 LWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG--SCKQTFPGHESDINAVTFFPNGWAFATGS  245 (340)
Q Consensus       168 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~s  245 (340)
                      +||+++|+..+++.+|.+.|+.++|+.+...+++|+.|.++++||-++.  ++++.+......|.++.+.  +..+++||
T Consensus        85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS  162 (307)
T KOG0316|consen   85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS  162 (307)
T ss_pred             EEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence            9999999999999999999999999999999999999999999998865  4677777677788888776  55899999


Q ss_pred             CCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEE--EECCC
Q psy15421        246 DDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCL--GVTED  323 (340)
Q Consensus       246 ~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~--~~s~d  323 (340)
                      .||+++.||++.++....    ....+|+++.|+|+++..++++-|+++++.|..+++.++.+.||.+.-+.+  +++..
T Consensus       163 ~DGtvRtydiR~G~l~sD----y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs  238 (307)
T KOG0316|consen  163 VDGTVRTYDIRKGTLSSD----YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS  238 (307)
T ss_pred             cCCcEEEEEeecceeehh----hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccc
Confidence            999999999998765433    334579999999999999999999999999999999999999998766544  55666


Q ss_pred             CCEEEEeeCCCcEEecC
Q psy15421        324 GMAVATGSWDSFLRIWN  340 (340)
Q Consensus       324 ~~~l~s~s~D~~i~iW~  340 (340)
                      ...+++||.||.|.+||
T Consensus       239 dthV~sgSEDG~Vy~wd  255 (307)
T KOG0316|consen  239 DTHVFSGSEDGKVYFWD  255 (307)
T ss_pred             ceeEEeccCCceEEEEE
Confidence            67899999999999996

>KOG0281|consensus

Probab=100.00  E-value=8e-36  Score=242.71  Aligned_cols=246  Identities=22%  Similarity=0.428  Sum_probs=207.2

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      ..+.|.||.+.|.|+.|.  .+.++||++|.+|++||+++++.+.++-.|..+|..+.|+  ..++++++.|.++.+|++
T Consensus       229 c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm  304 (499)
T KOG0281|consen  229 CLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDM  304 (499)
T ss_pred             HHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEec
Confidence            346789999999999985  5599999999999999999999999999999999999986  578999999999999999


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDA  206 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg  206 (340)
                      ..+. .....+.+.+|...|+.+.|. +.+++++++|.+|++|++.+++.+..+.+|...+-|+.+  .++++++|+.|.
T Consensus       305 ~sps-~it~rrVLvGHrAaVNvVdfd-~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDn  380 (499)
T KOG0281|consen  305 ASPT-DITLRRVLVGHRAAVNVVDFD-DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN  380 (499)
T ss_pred             cCch-HHHHHHHHhhhhhheeeeccc-cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCc
Confidence            7654 333445677999999988874 458999999999999999999999999999999988876  578999999999


Q ss_pred             cEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEE-E------EeecCCcccceEEEEEc
Q psy15421        207 SAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-A------MYSHDNIICGITSVAFS  279 (340)
Q Consensus       207 ~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~-~------~~~~~~~~~~i~~~~~s  279 (340)
                      +|++||+..|.+.+.++||+.-|.|+.|.  .+.+++|+.||.|++||+...... .      ......+...|..+.| 
T Consensus       381 tIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF-  457 (499)
T KOG0281|consen  381 TIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF-  457 (499)
T ss_pred             eEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee-
Confidence            99999999999999999999999999986  569999999999999998753211 1      0001112234666666 


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCcee
Q psy15421        280 RSGRLLLAGYDDFNCNVWDSMKTER  304 (340)
Q Consensus       280 ~~~~~l~~g~~d~~i~iw~~~~~~~  304 (340)
                       |...+++++.|.+|.|||..++.+
T Consensus       458 -D~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  458 -DEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             -cceEEEeccCCCeEEEEEcCCCCc
Confidence             556888899999999999877654

>KOG0274|consensus

Probab=100.00  E-value=5.1e-33  Score=251.79  Aligned_cols=276  Identities=24%  Similarity=0.403  Sum_probs=239.2

Q ss_pred             EEecC-ccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEE-eeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         49 RTLRG-HLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHA-IPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        49 ~~~~~-h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      +.+.+ |...+.+..|+  +.++++++.|++|++||..++..+.. +.+|.+.|.++++...+.++++|+.|.++++||.
T Consensus       201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~  278 (537)
T KOG0274|consen  201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC  278 (537)
T ss_pred             eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence            34454 56778899888  55889999999999999999998887 9999999999999988999999999999999998


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDA  206 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg  206 (340)
                      .++.    ....+.+|.+.+.++.. .+..+++|+.|.+|++|++.+++.+..+.+|.+.|.++.++  +.++++|+.|+
T Consensus       279 ~sg~----C~~~l~gh~stv~~~~~-~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~  351 (537)
T KOG0274|consen  279 STGE----CTHSLQGHTSSVRCLTI-DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDG  351 (537)
T ss_pred             CCCc----EEEEecCCCceEEEEEc-cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCc
Confidence            7764    55677899999987754 34467778899999999999999999998999999999997  77999999999


Q ss_pred             cEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCC-cEEEEeecCCcccceEEEEEcCCCcEE
Q psy15421        207 SAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD-QELAMYSHDNIICGITSVAFSRSGRLL  285 (340)
Q Consensus       207 ~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
                      +|++||+.+++++.++.+|..+|.++.+.+. .++++|+.|++|++||+++. +++..+.+...  -+.  .....+++|
T Consensus       352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~--~v~--~l~~~~~~L  426 (537)
T KOG0274|consen  352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS--LVS--SLLLRDNFL  426 (537)
T ss_pred             eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc--ccc--cccccccee
Confidence            9999999999999999999999999987764 79999999999999999988 67666544322  132  334568999


Q ss_pred             EEEeCCCcEEEEeCCCceeeeeecc-CCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        286 LAGYDDFNCNVWDSMKTERAGILAG-HDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       286 ~~g~~d~~i~iw~~~~~~~~~~~~~-h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++++.|++|++||..+++++..+.+ |...|.++++.  ...+++++.|+++++||
T Consensus       427 vs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d  480 (537)
T KOG0274|consen  427 VSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD  480 (537)
T ss_pred             EeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence            9999999999999999999999988 77999999887  34788899999999996

>KOG0299|consensus

Probab=100.00  E-value=2.9e-33  Score=235.16  Aligned_cols=275  Identities=25%  Similarity=0.391  Sum_probs=231.5

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCee-E---E-------------e-eCCCCcEEEEEECCCCC
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKV-H---A-------------I-PLRSSWVMTCAYAPSGS  110 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~---~-------------~-~~~~~~i~~v~~~~~~~  110 (340)
                      +.+..|+-+|.+|+++|++++.++++.|++|.-|++.+++.. .   .             - +.|...+.+++.++|++
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            567789999999999999999999999999999999887743 0   0             0 25667799999999999


Q ss_pred             EEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEE
Q psy15421        111 FVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMS  189 (340)
Q Consensus       111 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  189 (340)
                      ||++|+.|..+.||+..+.+    ....+.+|.+.|.+++|..+ ..+.+++.|++|++|++.....+.++.+|.+.|..
T Consensus       216 ylatgg~d~~v~Iw~~~t~e----hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~  291 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLE----HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLG  291 (479)
T ss_pred             EEEecCCCceEEEecCcccc----hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceee
Confidence            99999999999999998764    34457899999999999755 57999999999999999998889999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEee--cC
Q psy15421        190 LSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS--HD  267 (340)
Q Consensus       190 ~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~  267 (340)
                      +....-++.+-+|+.|+++++|++... ....+.+|.+.+-|++|-. ..+|++||.||.|.+|++...+++....  |.
T Consensus       292 IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg  369 (479)
T KOG0299|consen  292 IDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHG  369 (479)
T ss_pred             echhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeecccc
Confidence            988887887778889999999999543 3456788999999999985 4599999999999999999888887653  21


Q ss_pred             Ccc--------cceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc----eeeeeeccCCcceEEEEECCCCCEEEEe
Q psy15421        268 NII--------CGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT----ERAGILAGHDNRVSCLGVTEDGMAVATG  330 (340)
Q Consensus       268 ~~~--------~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~----~~~~~~~~h~~~i~~~~~s~d~~~l~s~  330 (340)
                      ...        .-|++++..|...++++|+.+|.|++|....+    .++..+. -.+.|++++|+++|..|+.|
T Consensus       370 v~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  370 VIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             ccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence            111        25899999999999999999999999997765    3344443 56899999999999966654

>KOG1446|consensus

Probab=100.00  E-value=1.5e-31  Score=215.54  Aligned_cols=286  Identities=21%  Similarity=0.307  Sum_probs=235.3

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeC--CCeEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGL--DNICSI  123 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~--d~~v~i  123 (340)
                      +..+.|+.-..+|.++.|+++|..+++++.|.+++|||..+++.+.++..+.-.+..+.|....+.+..++.  |.+||.
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence            444566767789999999999999999999999999999999999999888777888889877777777666  889999


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEE
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSG  202 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg  202 (340)
                      -++...    +..+.++||...|..+..++. +.+++++.|++|++||++..++...+..  ..-...+|.|.|-+++++
T Consensus        85 Lsl~dN----kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~GLifA~~  158 (311)
T KOG1446|consen   85 LSLHDN----KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFDPEGLIFALA  158 (311)
T ss_pred             EEeecC----ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec--CCCcceeECCCCcEEEEe
Confidence            988654    467889999999999998764 5799999999999999997766554432  234467899999999999


Q ss_pred             eCCCcEEEEECCCCe--eeeEec---CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCccc-ceEEE
Q psy15421        203 ACDASAKLWDIRDGS--CKQTFP---GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIIC-GITSV  276 (340)
Q Consensus       203 ~~dg~i~~wd~~~~~--~~~~~~---~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~-~i~~~  276 (340)
                      .....|++||+|+-.  +..++.   +-..+.+.+.|+|||++++.+...+.+++.|.-.+..+..+....... -....
T Consensus       159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a  238 (311)
T KOG1446|consen  159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA  238 (311)
T ss_pred             cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence            888899999998642  233332   345678999999999999999999999999988887766664322211 12577


Q ss_pred             EEcCCCcEEEEEeCCCcEEEEeCCCceeeeeecc-CCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        277 AFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAG-HDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       277 ~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~-h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      .|+||++++++|++||+|.+|+.++++.+..+.+ |..++.|+.|.|.-.+++|++  .++-+|
T Consensus       239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw  300 (311)
T KOG1446|consen  239 TFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW  300 (311)
T ss_pred             EECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence            8999999999999999999999999999999888 799999999999877777754  466666

>KOG0265|consensus

Probab=100.00  E-value=2.5e-33  Score=223.94  Aligned_cols=244  Identities=28%  Similarity=0.420  Sum_probs=207.9

Q ss_pred             EEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEE
Q psy15421         91 HAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALW  169 (340)
Q Consensus        91 ~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iw  169 (340)
                      ..+++|.+.|+.+.|+|+|.+|++||.|..|.+|+......+   ...+.+|.+.|..+.|..+ +.+++++.|.+++.|
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN---~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN---FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc---eeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            345789999999999999999999999999999997543332   3456699999999999755 579999999999999


Q ss_pred             ECCCCceEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCC
Q psy15421        170 DIETGQQCASFIGHTGDVMSLSLAPDMR-TFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDA  248 (340)
Q Consensus       170 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~  248 (340)
                      |+++|+....+.+|...|+++.-+.-+. ++.+|+.||++++||+|+..++++++ ...+++++.|..++....+|+-|+
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccC
Confidence            9999999999999999999998555554 45689999999999999988888775 356799999999999999999999


Q ss_pred             cEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCC----ceeeeeeccCCc----ceEEEEE
Q psy15421        249 TCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK----TERAGILAGHDN----RVSCLGV  320 (340)
Q Consensus       249 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~----~~~~~~~~~h~~----~i~~~~~  320 (340)
                      .|++||++....+..+.  ++...|+.+..+|+|.++.+-+-|.++++||...    .+++..+.+|..    .....+|
T Consensus       197 ~ikvWd~r~~d~~~~ls--Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw  274 (338)
T KOG0265|consen  197 DIKVWDLRKNDGLYTLS--GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW  274 (338)
T ss_pred             ceeeeccccCcceEEee--cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence            99999998777665543  4445799999999999999999999999999763    345777777643    2345789


Q ss_pred             CCCCCEEEEeeCCCcEEecC
Q psy15421        321 TEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       321 s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ||++..+.+||.|..+++||
T Consensus       275 sp~~~~i~ags~dr~vyvwd  294 (338)
T KOG0265|consen  275 SPNGTKITAGSADRFVYVWD  294 (338)
T ss_pred             cCCCCccccccccceEEEee
Confidence            99999999999999999997

>KOG0640|consensus

Probab=100.00  E-value=2.1e-33  Score=225.47  Aligned_cols=290  Identities=19%  Similarity=0.293  Sum_probs=236.4

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCC------------C------CeeEEeeCCCCcEEEEEECCCC
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYT------------T------NKVHAIPLRSSWVMTCAYAPSG  109 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~------------~------~~~~~~~~~~~~i~~v~~~~~~  109 (340)
                      ...+..|..++.+-+|++||.+++|||.|..|+|.|++.            +      ..+.++..|.+.|.++.|+|..
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            467889999999999999999999999999999999851            0      2467788899999999999999


Q ss_pred             CEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCe-EEEEeCCCeEEEEECCCCceEEEE---ecCCC
Q psy15421        110 SFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSSGDMSCALWDIETGQQCASF---IGHTG  185 (340)
Q Consensus       110 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~  185 (340)
                      ..|++|+.|++|+++|+.....+.  -.+.......|.++.|++.+. ++.|..--.+++||+++-++...-   ..|.+
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKr--A~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~  262 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKR--AFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG  262 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHH--HHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence            999999999999999986432111  111223455688899988875 555666678999999987764332   35889


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEec-CCCC-CeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEE
Q psy15421        186 DVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP-GHES-DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAM  263 (340)
Q Consensus       186 ~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~-~h~~-~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  263 (340)
                      .|+++.+++.++++++|+.||.|++||--+++|+.++. .|.+ .|.+..|..+++++++.+.|..+++|.+.+++.+..
T Consensus       263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~  342 (430)
T KOG0640|consen  263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE  342 (430)
T ss_pred             ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence            99999999999999999999999999988899988874 5654 789999999999999999999999999999998887


Q ss_pred             eecCCcc---cceEEEEEcCCCcEEEEEeC-CCcEEEEeCCCceeeeee-ccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        264 YSHDNII---CGITSVAFSRSGRLLLAGYD-DFNCNVWDSMKTERAGIL-AGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       264 ~~~~~~~---~~i~~~~~s~~~~~l~~g~~-d~~i~iw~~~~~~~~~~~-~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      +...+..   .--+...|+....|++.-.. .+.+.-||.++.+....+ .+|.+.+.++.-||.+..+++||.|-.+|.
T Consensus       343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF  422 (430)
T KOG0640|consen  343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF  422 (430)
T ss_pred             EecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence            7432111   11234567767777766543 467889999988877655 489999999999999999999999999999


Q ss_pred             c
Q psy15421        339 W  339 (340)
Q Consensus       339 W  339 (340)
                      |
T Consensus       423 W  423 (430)
T KOG0640|consen  423 W  423 (430)
T ss_pred             e
Confidence            9

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.1e-31  Score=242.73  Aligned_cols=270  Identities=16%  Similarity=0.167  Sum_probs=212.7

Q ss_pred             ccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCee-------------EEeeCCCCcEEEEEECC-CCCEEEEEeCCC
Q psy15421         54 HLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKV-------------HAIPLRSSWVMTCAYAP-SGSFVACGGLDN  119 (340)
Q Consensus        54 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-------------~~~~~~~~~i~~v~~~~-~~~~l~~~~~d~  119 (340)
                      |...|.....++++..+++++.+..+..|+...+..+             ..+.+|...|.+++|+| ++.+|++|+.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            4455666667778778888888888888876433221             13567899999999999 889999999999


Q ss_pred             eEEEEEccCCCC---ceEEEEeecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcC
Q psy15421        120 ICSIYSLKTREG---NVRVSRELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAP  194 (340)
Q Consensus       120 ~v~i~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  194 (340)
                      +|++|++.....   .......+.+|...|.++.|++.  +.|++++.|++|++||+++++....+.+|...|.+++|+|
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp  178 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL  178 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence            999999975421   11234567899999999999875  4788999999999999999998888889999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCC-eEEEEEecCCCEEEEEe----CCCcEEEEeCcCCc-EEEEeecCC
Q psy15421        195 DMRTFVSGACDASAKLWDIRDGSCKQTFPGHESD-INAVTFFPNGWAFATGS----DDATCRLFDIRADQ-ELAMYSHDN  268 (340)
Q Consensus       195 ~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~-v~~v~~~~~~~~l~s~s----~d~~i~iwd~~~~~-~~~~~~~~~  268 (340)
                      ++.++++|+.|++|++||+++++.+..+.+|.+. +..+.|.+++..+++++    .|+.|++||+++.. ++...... 
T Consensus       179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d-  257 (493)
T PTZ00421        179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD-  257 (493)
T ss_pred             CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC-
Confidence            9999999999999999999999988889889765 44677888877777654    47999999998644 33322211 


Q ss_pred             cccceEEEEEcCCCcEEEEEe-CCCcEEEEeCCCceeeeeecc-CCcceEEEEECCCC
Q psy15421        269 IICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMKTERAGILAG-HDNRVSCLGVTEDG  324 (340)
Q Consensus       269 ~~~~i~~~~~s~~~~~l~~g~-~d~~i~iw~~~~~~~~~~~~~-h~~~i~~~~~s~d~  324 (340)
                      ....+....|+|++++|++|+ .|+.|++||+.+++....... +..++..++|.|..
T Consensus       258 ~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        258 QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence            223466678999999999887 599999999988876654433 45667788888753

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.2e-31  Score=229.03  Aligned_cols=246  Identities=33%  Similarity=0.608  Sum_probs=215.8

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      ....+.+|...+..+.|+|+++.+++++.|+.|++||..+++.+..+..|...+.++.|+|++.++++++.++.+.+|++
T Consensus        43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~  122 (289)
T cd00200          43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV  122 (289)
T ss_pred             cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence            34678899999999999999999999999999999999988888888888889999999999999999988999999998


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEe-CCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSS-GDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                      .+..    ....+..|...+.++.+.+++.+++++ .|+.+.+||++.++....+..|...+.+++|+|+++.+++++.|
T Consensus       123 ~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  198 (289)
T cd00200         123 ETGK----CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD  198 (289)
T ss_pred             CCcE----EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCC
Confidence            7432    334555788889999998866555554 49999999999888888888899899999999999999999999


Q ss_pred             CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEE
Q psy15421        206 ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLL  285 (340)
Q Consensus       206 g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
                      +.|++||++.++....++.|...+.++.|+|++.++++++.|+.+++||+...+....+.  .+...+.+++|+|++++|
T Consensus       199 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l  276 (289)
T cd00200         199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--GHTNSVTSLAWSPDGKRL  276 (289)
T ss_pred             CcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc--ccCCcEEEEEECCCCCEE
Confidence            999999999988888888899999999999998888888889999999998777666554  333469999999999999


Q ss_pred             EEEeCCCcEEEEe
Q psy15421        286 LAGYDDFNCNVWD  298 (340)
Q Consensus       286 ~~g~~d~~i~iw~  298 (340)
                      ++++.|+.+++|+
T Consensus       277 ~~~~~d~~i~iw~  289 (289)
T cd00200         277 ASGSADGTIRIWD  289 (289)
T ss_pred             EEecCCCeEEecC
Confidence            9999999999996

>KOG0310|consensus

Probab=100.00  E-value=1.2e-32  Score=233.02  Aligned_cols=275  Identities=20%  Similarity=0.317  Sum_probs=231.5

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceE
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVR  134 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~  134 (340)
                      .+.|.+++|+|..++=++....-.+.|++..+.....++.-....++++.|..||++|++|+..|.|+|+|+.++    .
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r----~  101 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR----V  101 (487)
T ss_pred             cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH----H
Confidence            368999999998876555555568999998887777766666778999999999999999999999999996543    3


Q ss_pred             EEEeecCCCcceEEEEEcCC-C-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEE
Q psy15421        135 VSRELPGHTGYLSCCRFLDD-N-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR-TFVSGACDASAKLW  211 (340)
Q Consensus       135 ~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~sg~~dg~i~~w  211 (340)
                      +.+.+.+|+.++....|++. + .+++|+.|+.+++||+.+......+.+|++.|.|.+++|... .++|||-||+|++|
T Consensus       102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~  181 (487)
T KOG0310|consen  102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW  181 (487)
T ss_pred             HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence            56677899999999999764 3 577888899999999998877668889999999999999655 67899999999999


Q ss_pred             ECCCC-eeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCC-cEEEEeecCCcccceEEEEEcCCCcEEEEEe
Q psy15421        212 DIRDG-SCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD-QELAMYSHDNIICGITSVAFSRSGRLLLAGY  289 (340)
Q Consensus       212 d~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  289 (340)
                      |++.. ..+.++. |+.+|..+.+-|.|..+|+++. ..+++||+.++ +.+..+.  ++...|+|+++..++..|++|+
T Consensus       182 DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~--~H~KtVTcL~l~s~~~rLlS~s  257 (487)
T KOG0310|consen  182 DTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF--NHNKTVTCLRLASDSTRLLSGS  257 (487)
T ss_pred             EeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhh--cccceEEEEEeecCCceEeecc
Confidence            99987 4455664 9999999999999999999885 58999999854 4444333  2334699999999999999999


Q ss_pred             CCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        290 DDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       290 ~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      =|+.+++|+..+.+.+..+ .-.++|.+++.+||++.++.|-.||.+.+
T Consensus       258 LD~~VKVfd~t~~Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  258 LDRHVKVFDTTNYKVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             cccceEEEEccceEEEEee-ecccceeeEEecCCCceEEEecccceeee
Confidence            9999999998888887777 46799999999999999999999998754

>KOG1407|consensus

Probab=100.00  E-value=7.5e-32  Score=211.63  Aligned_cols=277  Identities=18%  Similarity=0.212  Sum_probs=229.2

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeE--EeeCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEE
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVH--AIPLRSSWVMTCAYAP-SGSFVACGGLDNICSIYS  125 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~i~~v~~~~-~~~~l~~~~~d~~v~i~~  125 (340)
                      +.+++|..+|.+++|+.+|..|++|+.|+++.+|+++..+...  ..++|.+.|-.++|+| +...|++++.|+++++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            5678999999999999999999999999999999998765433  3467777777777876 577899999999999999


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                      ++.+..    ........+.+...++.++++++.+..|..|.+.|.++.+.....+ ..-.+..++|+.++.+|+-...-
T Consensus        94 ~r~~k~----~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~Gl  168 (313)
T KOG1407|consen   94 IRSGKC----TARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGL  168 (313)
T ss_pred             eccCcE----EEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCC
Confidence            987542    2223333344554444566788899999999999999876654432 44567888998777787777788


Q ss_pred             CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEE
Q psy15421        206 ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLL  285 (340)
Q Consensus       206 g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
                      |+|.|....+-+++.++++|.....||.|+|+|++||+|+.|..+.+||+...-.+..+..  +..+|..+.|+-+|++|
T Consensus       169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR--ldwpVRTlSFS~dg~~l  246 (313)
T KOG1407|consen  169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR--LDWPVRTLSFSHDGRML  246 (313)
T ss_pred             ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc--ccCceEEEEeccCccee
Confidence            9999999988888999999999999999999999999999999999999986655555543  34579999999999999


Q ss_pred             EEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCC
Q psy15421        286 LAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWD  333 (340)
Q Consensus       286 ~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D  333 (340)
                      |+|+.|..|-|=+.+++..+-.+ .+.++-+.|+|+|...+||-+..|
T Consensus       247 ASaSEDh~IDIA~vetGd~~~eI-~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  247 ASASEDHFIDIAEVETGDRVWEI-PCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             eccCccceEEeEecccCCeEEEe-eccCCceeEEecCCCceeeEEecC
Confidence            99999999999999999988776 589999999999999999876665

>KOG0772|consensus

Probab=100.00  E-value=1.6e-32  Score=233.73  Aligned_cols=294  Identities=19%  Similarity=0.232  Sum_probs=228.4

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCe----e-EEeeCCCCcEEEEEECCCCCEEEEEeCCCe
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNK----V-HAIPLRSSWVMTCAYAPSGSFVACGGLDNI  120 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~-~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~  120 (340)
                      ..-..|++|...|.++++.|.|..|+|||-|-+|++||...-..    - ...+.....|.++.|++.|..+++.+..-.
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq  237 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ  237 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence            34467899999999999999999999999999999999754321    1 112334467899999999999888888888


Q ss_pred             EEEEEccCCC------Cc--eEEEEeecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCce-EEEEe-----cCC
Q psy15421        121 CSIYSLKTRE------GN--VRVSRELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQ-CASFI-----GHT  184 (340)
Q Consensus       121 v~i~~~~~~~------~~--~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~-~~~~~-----~~~  184 (340)
                      .+++|-...+      +.  ++-...-.+|...+++-+|++.  +.+++++.|+++++||+...+. .+.+.     +-.
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R  317 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR  317 (641)
T ss_pred             eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence            8998854211      00  0111123589999999999875  4699999999999999976543 33332     123


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee---eeEecCCCC--CeEEEEEecCCCEEEEEeCCCcEEEEeCcCCc
Q psy15421        185 GDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC---KQTFPGHES--DINAVTFFPNGWAFATGSDDATCRLFDIRADQ  259 (340)
Q Consensus       185 ~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~---~~~~~~h~~--~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  259 (340)
                      -++.+++|+|+++.|++|+.||.|.+|+.++...   ...-++|..  .|+||.|+++|++|+|-+.|+++++||+++.+
T Consensus       318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            3688999999999999999999999999865432   223356776  89999999999999999999999999999644


Q ss_pred             -EEEEeecCCcccceEEEEEcCCCcEEEEEeC------CCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeC
Q psy15421        260 -ELAMYSHDNIICGITSVAFSRSGRLLLAGYD------DFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSW  332 (340)
Q Consensus       260 -~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~------d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~  332 (340)
                       ++..........+-+.++|||+.++|++|..      .+++.+||..+.+.+..+.--...|..+.|+|-=+.|..|+.
T Consensus       398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg  477 (641)
T KOG0772|consen  398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSG  477 (641)
T ss_pred             cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecC
Confidence             4443322222334678899999999999754      478999999999998888777778888999998878888999


Q ss_pred             CCcEEec
Q psy15421        333 DSFLRIW  339 (340)
Q Consensus       333 D~~i~iW  339 (340)
                      ||+++|+
T Consensus       478 dG~~~vy  484 (641)
T KOG0772|consen  478 DGTAHVY  484 (641)
T ss_pred             CCceEEE
Confidence            9999875

>KOG0301|consensus

Probab=100.00  E-value=4.7e-32  Score=238.17  Aligned_cols=278  Identities=24%  Similarity=0.447  Sum_probs=230.7

Q ss_pred             eEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCee--EEeeCCCCcEEE-EEECC-CCCEEEEEeCCCe
Q psy15421         45 MRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKV--HAIPLRSSWVMT-CAYAP-SGSFVACGGLDNI  120 (340)
Q Consensus        45 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~i~~-v~~~~-~~~~l~~~~~d~~  120 (340)
                      .+..+.+.||...|..+++.+ +..++++|.||++++|+-...+.+  +.+..|...|.. ++|.+ ++-.+++|+.|..
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             ceeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence            456789999999999999764 457999999999999986555543  345667777776 78875 5556899999999


Q ss_pred             EEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEE
Q psy15421        121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV  200 (340)
Q Consensus       121 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  200 (340)
                      +.+|.....+    ....+.+|...|.++....+..+++|++|.++++|-.  ++....+.+|+..|.+++.-|++ .++
T Consensus        83 i~v~~~~~~~----P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~v  155 (745)
T KOG0301|consen   83 IIVFKLSQAE----PLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYV  155 (745)
T ss_pred             EEEEecCCCC----chhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEE
Confidence            9999986653    5567889999998887666777999999999999966  45666789999999999999987 788


Q ss_pred             EEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcC
Q psy15421        201 SGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSR  280 (340)
Q Consensus       201 sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  280 (340)
                      |||.|.+||+|.-  +++.++|.+|..-|+.+++-|++ .|+|++.||.|++|++.....+...+|..+   +.++...+
T Consensus       156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~---vYsis~~~  229 (745)
T KOG0301|consen  156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNF---VYSISMAL  229 (745)
T ss_pred             eccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceE---EEEEEecC
Confidence            9999999999974  77889999999999999999865 799999999999999966555555566655   77888888


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        281 SGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       281 ~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      ++..+++++.|++++||+..  ++.+.+.--.-.|+++.+-++|. |+.|+.||.||||
T Consensus       230 ~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf  285 (745)
T KOG0301|consen  230 SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF  285 (745)
T ss_pred             CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence            88999999999999999865  66666643334899999998886 6677789999998

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=9.5e-31  Score=237.84  Aligned_cols=252  Identities=15%  Similarity=0.184  Sum_probs=200.9

Q ss_pred             EEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCC-CCEEEEEeCCCeEEEEEccCCCCce----EEEEeecCCCcce
Q psy15421         72 SASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS-GSFVACGGLDNICSIYSLKTREGNV----RVSRELPGHTGYL  146 (340)
Q Consensus        72 s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~----~~~~~~~~~~~~v  146 (340)
                      .|+.++.|++|+......+..+.+|...|.+++|+|+ +.+|++|+.|++|++|++..+....    .....+.+|...|
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            3677899999998877778889999999999999997 7899999999999999997543211    1233567899999


Q ss_pred             EEEEEcCCC-e-EEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecC
Q psy15421        147 SCCRFLDDN-Q-IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG  224 (340)
Q Consensus       147 ~~~~~~~~~-~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~  224 (340)
                      .++.|++.+ . +++++.|++|++||+++++....+. |...+.+++|+|++.++++++.|+.|++||+++++.+..+.+
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g  207 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI  207 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            999998865 3 5688899999999999988776664 667899999999999999999999999999999999899999


Q ss_pred             CCCCeEEE-----EEecCCCEEEEEeCCC----cEEEEeCcC-CcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcE
Q psy15421        225 HESDINAV-----TFFPNGWAFATGSDDA----TCRLFDIRA-DQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNC  294 (340)
Q Consensus       225 h~~~v~~v-----~~~~~~~~l~s~s~d~----~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i  294 (340)
                      |.+.+.+.     .|++++.++++++.|+    .|+|||++. .+++....+......+......+++.++++|+.|++|
T Consensus       208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI  287 (568)
T PTZ00420        208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC  287 (568)
T ss_pred             ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence            98765443     3457888999988775    799999985 5566555544433334444446679999999999999


Q ss_pred             EEEeCCCceeeeeec--cCCcceEEEEECCCCC
Q psy15421        295 NVWDSMKTERAGILA--GHDNRVSCLGVTEDGM  325 (340)
Q Consensus       295 ~iw~~~~~~~~~~~~--~h~~~i~~~~~s~d~~  325 (340)
                      ++|+...+. +..+.  .+..++.+++|.|+..
T Consensus       288 r~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        288 RYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             EEEEccCCc-EEeecccccCCCccceEEccccc
Confidence            999986653 22222  2567888999999754

>KOG0278|consensus

Probab=100.00  E-value=2e-33  Score=219.24  Aligned_cols=247  Identities=23%  Similarity=0.449  Sum_probs=214.2

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      .-+|.||.+.|++..++.+...-+|++.|-+.++||..++..++++. |..-|.+++|+.|.++|++|+.++.+|||+++
T Consensus        52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln  130 (334)
T KOG0278|consen   52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLN  130 (334)
T ss_pred             EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhcc
Confidence            35899999999999999988889999999999999999999888874 56678999999999999999999999999998


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEc-CCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFL-DDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDA  206 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg  206 (340)
                      ..+.   ...++.+|++.|..+.|. .+..+++++.|++|++||.+++..+++++ ...+|.++-+++++.++ +-..-+
T Consensus       131 ~p~A---pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~il-Tia~gs  205 (334)
T KOG0278|consen  131 RPKA---PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRIL-TIAYGS  205 (334)
T ss_pred             CCCC---CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEE-EEecCc
Confidence            7653   345678999999888885 56778888999999999999999988876 45679999999999766 445678


Q ss_pred             cEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEE
Q psy15421        207 SAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLL  286 (340)
Q Consensus       207 ~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  286 (340)
                      .|++||..+-..++.++. ...|.+...+|+...|+.|+.|..++.||+.++..+..+ ..++..+|.|+.|+|+|...+
T Consensus       206 sV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yA  283 (334)
T KOG0278|consen  206 SVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYA  283 (334)
T ss_pred             eeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceee
Confidence            999999998888887763 456889999999999999999999999999998877664 244556899999999999999


Q ss_pred             EEeCCCcEEEEeCCCc
Q psy15421        287 AGYDDFNCNVWDSMKT  302 (340)
Q Consensus       287 ~g~~d~~i~iw~~~~~  302 (340)
                      +|+.||+|++|...-+
T Consensus       284 sGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  284 SGSEDGTIRLWQTTPG  299 (334)
T ss_pred             ccCCCceEEEEEecCC
Confidence            9999999999986443

>KOG0292|consensus

Probab=100.00  E-value=9.9e-33  Score=248.21  Aligned_cols=242  Identities=19%  Similarity=0.337  Sum_probs=212.9

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCC
Q psy15421         95 LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIET  173 (340)
Q Consensus        95 ~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~  173 (340)
                      ..+..+..++|+|....++++-..|.|++||.+.+.    ....+..|.++|..+.|++.+ .+++|+.|..|++|+.++
T Consensus         7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t----li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~   82 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT----LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT   82 (1202)
T ss_pred             cccccccceecCCCCCEEEEeecCceeeeehhhhhh----HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence            345668889999999999999999999999998763    456678999999999998875 678899999999999999


Q ss_pred             CceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy15421        174 GQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLF  253 (340)
Q Consensus       174 ~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iw  253 (340)
                      .+++.++.+|-+.|..+.|++.-..++++|.|.+|++|++.+.+++..+.||...|.|..|+|....++|+|-|.+|++|
T Consensus        83 rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW  162 (1202)
T KOG0292|consen   83 RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW  162 (1202)
T ss_pred             ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCcCCcEE---------------------------EEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCce--e
Q psy15421        254 DIRADQEL---------------------------AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTE--R  304 (340)
Q Consensus       254 d~~~~~~~---------------------------~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~--~  304 (340)
                      |+...+..                           ..+-.+++.-+|+.++|+|.-.++++|++|+.|++|.....+  .
T Consensus       163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE  242 (1202)
T KOG0292|consen  163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE  242 (1202)
T ss_pred             eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccccee
Confidence            97542110                           011113344569999999999999999999999999864332  3


Q ss_pred             eeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        305 AGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       305 ~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +-+++||.+.|+++-|+|....++|.|.|++|||||
T Consensus       243 vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD  278 (1202)
T KOG0292|consen  243 VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD  278 (1202)
T ss_pred             ehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence            557899999999999999999999999999999997

>KOG0282|consensus

Probab=100.00  E-value=2.8e-33  Score=236.64  Aligned_cols=249  Identities=22%  Similarity=0.403  Sum_probs=213.6

Q ss_pred             CCeeEEeeCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCC
Q psy15421         87 TNKVHAIPLRSSWVMTCAYAP-SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDM  164 (340)
Q Consensus        87 ~~~~~~~~~~~~~i~~v~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~  164 (340)
                      .+.++++.+|...|.++.|.| .+.+|++++.|+.|+||++....   ...+++.+|...|..++|+.++ .+++++-|+
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~---~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~  280 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR---RCLRTFKGHRKPVRDASFNNCGTSFLSASFDR  280 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc---ceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence            345678889999999999999 89999999999999999997632   4668899999999999998765 699999999


Q ss_pred             eEEEEECCCCceEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEE
Q psy15421        165 SCALWDIETGQQCASFIGHTGDVMSLSLAPDM-RTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFAT  243 (340)
Q Consensus       165 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s  243 (340)
                      .+++||.++|++..++.. ...+.|+.|+|++ +.|++|+.|+.|+.||+|+++.++.+..|-+.|+.+.|.++|++|++
T Consensus       281 ~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFis  359 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFIS  359 (503)
T ss_pred             eeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEee
Confidence            999999999999888753 3457899999998 78999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc---eeeeeeccCCc--ceEEE
Q psy15421        244 GSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT---ERAGILAGHDN--RVSCL  318 (340)
Q Consensus       244 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~---~~~~~~~~h~~--~i~~~  318 (340)
                      .+.|++++||+.+..-++....... .....++..+|.++++++-+-|..|.+|.....   .....+.||.-  --..+
T Consensus       360 sSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v  438 (503)
T KOG0282|consen  360 SSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQV  438 (503)
T ss_pred             eccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeE
Confidence            9999999999998766554432222 234678999999999999999999999985422   23446778854  45568


Q ss_pred             EECCCCCEEEEeeCCCcEEecC
Q psy15421        319 GVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       319 ~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .|||||.+|+||+.||.+.+||
T Consensus       439 ~fSpDG~~l~SGdsdG~v~~wd  460 (503)
T KOG0282|consen  439 DFSPDGRTLCSGDSDGKVNFWD  460 (503)
T ss_pred             EEcCCCCeEEeecCCccEEEee
Confidence            9999999999999999999997

>KOG0645|consensus

Probab=100.00  E-value=1.5e-30  Score=205.39  Aligned_cols=243  Identities=19%  Similarity=0.310  Sum_probs=200.8

Q ss_pred             eeEEeeCCCCcEEEEEECCC-CCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeE
Q psy15421         89 KVHAIPLRSSWVMTCAYAPS-GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSC  166 (340)
Q Consensus        89 ~~~~~~~~~~~i~~v~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v  166 (340)
                      .++.+++|.+.+..++|+|. |..||+++.|+.|++|+...++.-......-.+|...|..++|+|.+ .|++++-|.++
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~   85 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV   85 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence            45677889899999999998 89999999999999999875322111222234799999999998876 57788889999


Q ss_pred             EEEECCCC--ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eeeeEecCCCCCeEEEEEecCCCEE
Q psy15421        167 ALWDIETG--QQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG---SCKQTFPGHESDINAVTFFPNGWAF  241 (340)
Q Consensus       167 ~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~---~~~~~~~~h~~~v~~v~~~~~~~~l  241 (340)
                      .||.-..+  +.+..+++|..+|.|++|+++|++|++++.|+.|-+|.+..+   ++...+++|...|..+.|+|....|
T Consensus        86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL  165 (312)
T KOG0645|consen   86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL  165 (312)
T ss_pred             EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence            99987644  567889999999999999999999999999999999998754   4677889999999999999998899


Q ss_pred             EEEeCCCcEEEEeCcC---CcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEE
Q psy15421        242 ATGSDDATCRLFDIRA---DQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCL  318 (340)
Q Consensus       242 ~s~s~d~~i~iwd~~~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~  318 (340)
                      +|+|.|.+|++|+-..   ...+..+.  .+...|.+++|+|.|..|+++++|++++||-..+.    .-.-|..+++.+
T Consensus       166 ~S~SYDnTIk~~~~~~dddW~c~~tl~--g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v  239 (312)
T KOG0645|consen  166 FSCSYDNTIKVYRDEDDDDWECVQTLD--GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDV  239 (312)
T ss_pred             EEeccCCeEEEEeecCCCCeeEEEEec--CccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEee
Confidence            9999999999998662   23344443  22235999999999999999999999999985421    123578999999


Q ss_pred             EECCCCCEEEEeeCCCcEEec
Q psy15421        319 GVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       319 ~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      +|. +| .|+|++.|+.|+|+
T Consensus       240 ~W~-~~-~IaS~ggD~~i~lf  258 (312)
T KOG0645|consen  240 PWD-NG-VIASGGGDDAIRLF  258 (312)
T ss_pred             eec-cc-ceEeccCCCEEEEE
Confidence            999 44 79999999999986

>KOG1446|consensus

Probab=100.00  E-value=1e-30  Score=210.71  Aligned_cols=240  Identities=21%  Similarity=0.317  Sum_probs=200.4

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEc-CCCeEEEEeC--CCeEEEEEC
Q psy15421         95 LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL-DDNQIVTSSG--DMSCALWDI  171 (340)
Q Consensus        95 ~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~--d~~v~iwd~  171 (340)
                      .-...|.++.|+++|.++++++.|.++++||...+.    ..+++..+.-.+...+|. .++.++.++.  |.+|+..++
T Consensus        12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~----~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl   87 (311)
T KOG1446|consen   12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK----QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL   87 (311)
T ss_pred             cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc----eeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence            345679999999999999999999999999987654    445566666667777774 4455666655  899999999


Q ss_pred             CCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q psy15421        172 ETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCR  251 (340)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~  251 (340)
                      ..++.++-|.+|...|.+++.+|-+..+++++.|++|++||++..+|...+.--.  -..++|+|.|-+||++.....|+
T Consensus        88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~~~Ik  165 (311)
T KOG1446|consen   88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGSELIK  165 (311)
T ss_pred             ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecCCCeEE
Confidence            9999999999999999999999999999999999999999999888766664333  33578999999999999888999


Q ss_pred             EEeCcCC--cEEEEeecC-CcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcce---EEEEECCCCC
Q psy15421        252 LFDIRAD--QELAMYSHD-NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRV---SCLGVTEDGM  325 (340)
Q Consensus       252 iwd~~~~--~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i---~~~~~s~d~~  325 (340)
                      +||++..  .+-..+... ......+.+.|||||++|+.++..+.+++.|.-++..+..+.+|...-   -...|+||++
T Consensus       166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~  245 (311)
T KOG1446|consen  166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK  245 (311)
T ss_pred             EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence            9999853  333344322 344568999999999999999999999999999999888888776443   4678999999


Q ss_pred             EEEEeeCCCcEEecC
Q psy15421        326 AVATGSWDSFLRIWN  340 (340)
Q Consensus       326 ~l~s~s~D~~i~iW~  340 (340)
                      ++++|+.||+|.+|+
T Consensus       246 Fvl~gs~dg~i~vw~  260 (311)
T KOG1446|consen  246 FVLSGSDDGTIHVWN  260 (311)
T ss_pred             EEEEecCCCcEEEEE
Confidence            999999999999996

>KOG2096|consensus

Probab=100.00  E-value=2.3e-31  Score=214.47  Aligned_cols=287  Identities=21%  Similarity=0.294  Sum_probs=210.3

Q ss_pred             EecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCee----EEeeCCCCcEEEEEECCCCCE-EEEEeCCCeEEEE
Q psy15421         50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKV----HAIPLRSSWVMTCAYAPSGSF-VACGGLDNICSIY  124 (340)
Q Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~i~~v~~~~~~~~-l~~~~~d~~v~i~  124 (340)
                      .|+||.+.|++++|+.||+.|+|++.|++|+||++.+....    .......+..+.++|+||-+- ++..-..+++++|
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy  160 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY  160 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence            48999999999999999999999999999999998653211    011122234567899998654 4455567788898


Q ss_pred             EccCC-CCceEEEE-------eecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCC
Q psy15421        125 SLKTR-EGNVRVSR-------ELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPD  195 (340)
Q Consensus       125 ~~~~~-~~~~~~~~-------~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  195 (340)
                      .+... ++......       ....|...+..+-..++ ..+++++.|..|.+|+++ |+.+..+......-...+.+|+
T Consensus       161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~  239 (420)
T KOG2096|consen  161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD  239 (420)
T ss_pred             EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence            76432 12211100       11123434443333344 368899999999999998 8888877666666778899999


Q ss_pred             CCEEEEEeCCCcEEEEEC---CCCe-----eeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCC-------cE
Q psy15421        196 MRTFVSGACDASAKLWDI---RDGS-----CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD-------QE  260 (340)
Q Consensus       196 ~~~~~sg~~dg~i~~wd~---~~~~-----~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~-------~~  260 (340)
                      |+++++++..-.|++|.+   +.|.     .+..++||...|..++|+|+.+.++|.|.||++++||+.-.       +.
T Consensus       240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~  319 (420)
T KOG2096|consen  240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKI  319 (420)
T ss_pred             CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchH
Confidence            999999999999999985   2222     24578899999999999999999999999999999997521       11


Q ss_pred             EEEeec--CCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeee-ccCCcceEEEEECCCCCEEEEeeCCCcEE
Q psy15421        261 LAMYSH--DNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGIL-AGHDNRVSCLGVTEDGMAVATGSWDSFLR  337 (340)
Q Consensus       261 ~~~~~~--~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~-~~h~~~i~~~~~s~d~~~l~s~s~D~~i~  337 (340)
                      +.....  .........++.+|.|+.||.+... .+++|..++++..-.+ .-|...|++++|+++|+++++++ |..++
T Consensus       320 Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs-~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vr  397 (420)
T KOG2096|consen  320 LKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS-DLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVR  397 (420)
T ss_pred             hhcCCcchhhcCCCceEEEeCCCCcEEEeecCC-ceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeee
Confidence            222211  1112234578999999999876543 6999998888765544 56999999999999999999998 66766


Q ss_pred             ec
Q psy15421        338 IW  339 (340)
Q Consensus       338 iW  339 (340)
                      +.
T Consensus       398 v~  399 (420)
T KOG2096|consen  398 VI  399 (420)
T ss_pred             ee
Confidence            53

>KOG0313|consensus

Probab=100.00  E-value=1.6e-31  Score=219.86  Aligned_cols=252  Identities=26%  Similarity=0.412  Sum_probs=208.6

Q ss_pred             eeEEeEEecCccCcEEEEEEcCCCC---eEEEEeCCCeEEEEeCCCCCee----EEeeCCCCcEEEEEECCCCCEEEEEe
Q psy15421         44 QMRTRRTLRGHLAKIYAMHWGSDSR---NLVSASQDGKLIVWDSYTTNKV----HAIPLRSSWVMTCAYAPSGSFVACGG  116 (340)
Q Consensus        44 ~~~~~~~~~~h~~~v~~~~~s~~~~---~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~i~~v~~~~~~~~l~~~~  116 (340)
                      .-+..+++.||.++|.+++|.-.+.   .++++|.|.++++|-.+.++..    ..-++|...|-+|...++|..+++|+
T Consensus       133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS  212 (423)
T KOG0313|consen  133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS  212 (423)
T ss_pred             CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec
Confidence            4456788999999999999854333   5999999999999987766532    12238999999999999999999999


Q ss_pred             CCCeEEEEEccCCC---------------------CceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCc
Q psy15421        117 LDNICSIYSLKTRE---------------------GNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQ  175 (340)
Q Consensus       117 ~d~~v~i~~~~~~~---------------------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~  175 (340)
                      .|.++.||+.....                     +...+..++.+|...|..+.|.+...+.++++|.+|+.||+.++.
T Consensus       213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~  292 (423)
T KOG0313|consen  213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGG  292 (423)
T ss_pred             ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeeccc
Confidence            99999999932211                     001234467899999999999998899999999999999999998


Q ss_pred             eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---eeeEecCCCCCeEEEEEecC-CCEEEEEeCCCcEE
Q psy15421        176 QCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS---CKQTFPGHESDINAVTFFPN-GWAFATGSDDATCR  251 (340)
Q Consensus       176 ~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~---~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~  251 (340)
                      ...++.+. ...++++.+|...++++|+.|..|++||.+++.   ..+++.+|..-|.++.|+|. ..+|++|+.|++++
T Consensus       293 ~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k  371 (423)
T KOG0313|consen  293 LKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK  371 (423)
T ss_pred             ceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence            88777653 458999999999999999999999999998864   45688999999999999996 45789999999999


Q ss_pred             EEeCcCCc-EEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeC
Q psy15421        252 LFDIRADQ-ELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       252 iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~  299 (340)
                      +||+++.+ ++..+.  .+...|.++.|+ .+..+++|+.|.+++|+..
T Consensus       372 lWDvRS~k~plydI~--~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  372 LWDVRSTKAPLYDIA--GHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             EEEeccCCCcceeec--cCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence            99999766 665543  223458999998 4679999999999999874

>KOG0973|consensus

Probab=100.00  E-value=3.3e-31  Score=243.79  Aligned_cols=288  Identities=18%  Similarity=0.298  Sum_probs=231.5

Q ss_pred             EEecCccC-cEEEEEEcCCCCeEEEEe--CCCeEEEEeCCC------------CCeeEEeeCCCCcEEEEEECCCCCEEE
Q psy15421         49 RTLRGHLA-KIYAMHWGSDSRNLVSAS--QDGKLIVWDSYT------------TNKVHAIPLRSSWVMTCAYAPSGSFVA  113 (340)
Q Consensus        49 ~~~~~h~~-~v~~~~~s~~~~~l~s~~--~d~~i~iwd~~~------------~~~~~~~~~~~~~i~~v~~~~~~~~l~  113 (340)
                      .++-+|.+ .|++++.+||+..++|||  .|+.++||+...            .+.+..+..|...|.|+.|+|||.|||
T Consensus         6 p~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA   85 (942)
T KOG0973|consen    6 PTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA   85 (942)
T ss_pred             ccccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence            44556654 689999999999999999  999999998632            223456678899999999999999999


Q ss_pred             EEeCCCeEEEEEccC------C--------CCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEE
Q psy15421        114 CGGLDNICSIYSLKT------R--------EGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCA  178 (340)
Q Consensus       114 ~~~~d~~v~i~~~~~------~--------~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~  178 (340)
                      +|+.|+.|.||....      .        .+.++....+.+|...|..+.|++++ .+++++.|++|.+|+..+.+.+.
T Consensus        86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~  165 (942)
T KOG0973|consen   86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK  165 (942)
T ss_pred             eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence            999999999999873      0        01234566788999999999998765 68889999999999999999999


Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCC------CCeEEEEEecCCCEEEEEeC----CC
Q psy15421        179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE------SDINAVTFFPNGWAFATGSD----DA  248 (340)
Q Consensus       179 ~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~------~~v~~v~~~~~~~~l~s~s~----d~  248 (340)
                      ++.+|.+.|..+.|.|-|++|++-+.|++|++|++.+-...+.+.++.      .-+.-+.|+|||.+|++...    -.
T Consensus       166 vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~  245 (942)
T KOG0973|consen  166 VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS  245 (942)
T ss_pred             eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence            999999999999999999999999999999999977766666655433      23678999999999998643    23


Q ss_pred             cEEEEeCcCCcEE-EEeecCCcccceEEEEEcCC-----Cc------------EEEEEeCCCcEEEEeCCCceeeeeecc
Q psy15421        249 TCRLFDIRADQEL-AMYSHDNIICGITSVAFSRS-----GR------------LLLAGYDDFNCNVWDSMKTERAGILAG  310 (340)
Q Consensus       249 ~i~iwd~~~~~~~-~~~~~~~~~~~i~~~~~s~~-----~~------------~l~~g~~d~~i~iw~~~~~~~~~~~~~  310 (340)
                      ++.|.+-.+.+.- ...+|.   .++.+++|+|.     .+            .+|+|+.|+.|.||.....+++.....
T Consensus       246 ~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~  322 (942)
T KOG0973|consen  246 TIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN  322 (942)
T ss_pred             eeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh
Confidence            4667765554422 223343   47899999981     11            688999999999999876666554322


Q ss_pred             -CCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        311 -HDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       311 -h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                       -...|..++|+|||..|+.+|.||+|.+.
T Consensus       323 lf~~SI~DmsWspdG~~LfacS~DGtV~~i  352 (942)
T KOG0973|consen  323 LFNKSIVDMSWSPDGFSLFACSLDGTVALI  352 (942)
T ss_pred             hhcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence             24689999999999999999999999763

>KOG0274|consensus

Probab=100.00  E-value=4.4e-31  Score=239.24  Aligned_cols=254  Identities=27%  Similarity=0.433  Sum_probs=219.7

Q ss_pred             EEeEE-ecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q psy15421         46 RTRRT-LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIY  124 (340)
Q Consensus        46 ~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~  124 (340)
                      ....+ |.||.+.|+++++..-+.++++|+.|+++++||..++++.+.+.+|.+.+.++..  ...++++|+.|.+|++|
T Consensus       239 ~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW  316 (537)
T KOG0274|consen  239 YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVW  316 (537)
T ss_pred             eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEE
Confidence            33445 9999999999999877889999999999999999999999999999998877644  56778889999999999


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC  204 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~  204 (340)
                      ++.++    .....+.+|...|.++... .+.+++|+.|++|++||+.+++.+..+.+|...|.++.+.+. ..+++|+.
T Consensus       317 ~v~n~----~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~  390 (537)
T KOG0274|consen  317 DVTNG----ACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL  390 (537)
T ss_pred             eccCc----ceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee
Confidence            99865    3556667799999998876 778999999999999999999999999999999999988765 78999999


Q ss_pred             CCcEEEEECCCC-eeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCc
Q psy15421        205 DASAKLWDIRDG-SCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR  283 (340)
Q Consensus       205 dg~i~~wd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  283 (340)
                      |++|++||+++. +++..+++|.+-+..+.+.  +..|++++.|+.|++||...++.+..+... +...|.++++.  ..
T Consensus       391 D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~  465 (537)
T KOG0274|consen  391 DTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KE  465 (537)
T ss_pred             ccceEeecCCchhhhhhhhcCCcccccccccc--cceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cc
Confidence            999999999999 8999999999988776654  679999999999999999998888776543 33457777665  57


Q ss_pred             EEEEEeCCCcEEEEeCCCceeeeeeccCC
Q psy15421        284 LLLAGYDDFNCNVWDSMKTERAGILAGHD  312 (340)
Q Consensus       284 ~l~~g~~d~~i~iw~~~~~~~~~~~~~h~  312 (340)
                      .+++++.|+++++||+.++.....+-.++
T Consensus       466 ~il~s~~~~~~~l~dl~~~~~~~~l~~~~  494 (537)
T KOG0274|consen  466 EILCSSDDGSVKLWDLRSGTLIRTLLSTD  494 (537)
T ss_pred             eEEEEecCCeeEEEecccCchhhhhhhcc
Confidence            88999999999999999988877664444

>KOG0647|consensus

Probab=100.00  E-value=1.4e-30  Score=208.42  Aligned_cols=266  Identities=19%  Similarity=0.318  Sum_probs=213.6

Q ss_pred             ccCcEEEEEEcC-CCCeEEEEeCCCeEEEEeCCCC-Ce-eEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCC
Q psy15421         54 HLAKIYAMHWGS-DSRNLVSASQDGKLIVWDSYTT-NK-VHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTRE  130 (340)
Q Consensus        54 h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~-~~-~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~  130 (340)
                      -.+.|.+++||| ...+++++|.|++||+|+++.. .. ......|..+|++++|+.+|..+++|+.|+.+++||+.++.
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            457899999999 5566779999999999999863 22 24456788999999999999999999999999999998763


Q ss_pred             CceEEEEeecCCCcceEEEEEcCC-C--eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q psy15421        131 GNVRVSRELPGHTGYLSCCRFLDD-N--QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDAS  207 (340)
Q Consensus       131 ~~~~~~~~~~~~~~~v~~~~~~~~-~--~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~  207 (340)
                           ...+..|...|.+++|.+. +  .|++|++|.++++||.+...++.++. ..+.+.++..-  ..+++.+..++.
T Consensus       106 -----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~  177 (347)
T KOG0647|consen  106 -----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERH  177 (347)
T ss_pred             -----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCc
Confidence                 2345679999999999654 2  58999999999999999877776654 34556666553  347888999999


Q ss_pred             EEEEECCCCeeeeEecCCCC----CeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEE--EEee-cC------CcccceE
Q psy15421        208 AKLWDIRDGSCKQTFPGHES----DINAVTFFPNGWAFATGSDDATCRLFDIRADQEL--AMYS-HD------NIICGIT  274 (340)
Q Consensus       208 i~~wd~~~~~~~~~~~~h~~----~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~-~~------~~~~~i~  274 (340)
                      |.+|+++++..  .++.+++    .++||+..++...+|.|+-+|.+-|..+....+.  ..|. |.      ....+|+
T Consensus       178 i~vynL~n~~t--e~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN  255 (347)
T KOG0647|consen  178 IAVYNLENPPT--EFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN  255 (347)
T ss_pred             EEEEEcCCCcc--hhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec
Confidence            99999987643  3333333    4789999999888899999999999988764222  2221 22      1245699


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEE
Q psy15421        275 SVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVAT  329 (340)
Q Consensus       275 ~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s  329 (340)
                      +++|+|.-..|++++.||+..+||......+.....|..+|+|.+|+.+|.++|-
T Consensus       256 si~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaY  310 (347)
T KOG0647|consen  256 SIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAY  310 (347)
T ss_pred             ceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEE
Confidence            9999999999999999999999998777778888899999999999999998773

>KOG0641|consensus

Probab=100.00  E-value=2.6e-29  Score=193.83  Aligned_cols=284  Identities=23%  Similarity=0.358  Sum_probs=226.6

Q ss_pred             CccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCC------CC----C-----eeEEeeCCCCcEEEEEECCCCCEEEEEeC
Q psy15421         53 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSY------TT----N-----KVHAIPLRSSWVMTCAYAPSGSFVACGGL  117 (340)
Q Consensus        53 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~------~~----~-----~~~~~~~~~~~i~~v~~~~~~~~l~~~~~  117 (340)
                      .....|.+++|+|.|.+.+.|+..++.+|--.-      .+    +     .....+.|.+.|+|++|+|+|.++++|+.
T Consensus        30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn  109 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN  109 (350)
T ss_pred             cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence            345689999999999999999999999986321      11    1     11234567889999999999999999999


Q ss_pred             CCeEEEEEccCCCCce-EEEEeecCCCcceEEEEEcCC----CeEEEE--eCCCeEEEEECCCCceEEEEecCCCCeEEE
Q psy15421        118 DNICSIYSLKTREGNV-RVSRELPGHTGYLSCCRFLDD----NQIVTS--SGDMSCALWDIETGQQCASFIGHTGDVMSL  190 (340)
Q Consensus       118 d~~v~i~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~----~~l~~~--~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~  190 (340)
                      |++|++..++....+. -...++.-|.+.+..++|.++    +.+++.  .+|-.|.+-|-..|+....+.+|.+.+.++
T Consensus       110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal  189 (350)
T KOG0641|consen  110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL  189 (350)
T ss_pred             CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE
Confidence            9999998776533221 123345668888988888542    344443  346677777888899999999999999876


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecC--C-----CCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEE
Q psy15421        191 SLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG--H-----ESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAM  263 (340)
Q Consensus       191 ~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~--h-----~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  263 (340)
                      - +=++-.+++|+.|.+|++||++-+.++..+..  |     .+.|.+|++.|.|+.|++|-.|.++.+||++.++.+..
T Consensus       190 y-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~  268 (350)
T KOG0641|consen  190 Y-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR  268 (350)
T ss_pred             E-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee
Confidence            3 34577899999999999999999888877631  2     25789999999999999999999999999999988876


Q ss_pred             eecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc----eeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        264 YSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT----ERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       264 ~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~----~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      +..  +...|.++.|+|...|+++++.|..|++-|+...    -++.....|.+.+..+.|+|..-.++|.|.|.++.+|
T Consensus       269 f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlw  346 (350)
T KOG0641|consen  269 FHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLW  346 (350)
T ss_pred             eCC--CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEe
Confidence            632  2346999999999999999999999999986421    1233456799999999999999899999999999999

>KOG0296|consensus

Probab=99.98  E-value=6.4e-30  Score=209.44  Aligned_cols=247  Identities=21%  Similarity=0.353  Sum_probs=209.3

Q ss_pred             CeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeE
Q psy15421         88 NKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSC  166 (340)
Q Consensus        88 ~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v  166 (340)
                      ..+.++..|...+.+++.+|+.+.+++|+.|....+|++.+++    ....+.+|...|.++.|+.++ .|++|.-+|.|
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge----~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v  130 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE----FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKV  130 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc----ceeEecCCCCceEEEEEccCceEEEecCCCccE
Confidence            3466788899999999999999999999999999999998876    556788999999999998665 67788889999


Q ss_pred             EEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeC
Q psy15421        167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSD  246 (340)
Q Consensus       167 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~  246 (340)
                      .+|...++.....+..--..+.-|.|+|....++.|+.||.+-+|.+.++...+.+.||..++++-.|.|+|+.++++..
T Consensus       131 ~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~  210 (399)
T KOG0296|consen  131 LVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD  210 (399)
T ss_pred             EEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec
Confidence            99999999887777655667889999999999999999999999999998888899999999999999999999999999


Q ss_pred             CCcEEEEeCcCCcEEEEeecCC-------------------------------------------------ccc---ceE
Q psy15421        247 DATCRLFDIRADQELAMYSHDN-------------------------------------------------IIC---GIT  274 (340)
Q Consensus       247 d~~i~iwd~~~~~~~~~~~~~~-------------------------------------------------~~~---~i~  274 (340)
                      ||+|++||.++++++.......                                                 ...   .|-
T Consensus       211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve  290 (399)
T KOG0296|consen  211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE  290 (399)
T ss_pred             CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence            9999999999888766543100                                                 000   022


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        275 SVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       275 ~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++.|+..-++.|+|+-||+|.|||........ ...|+..|..+.|-+ ..+|++++.||.|++||
T Consensus       291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~-~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD  354 (399)
T KOG0296|consen  291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRH-ICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD  354 (399)
T ss_pred             hcccccccchhhcccccceEEEEecccchhhe-eccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence            23334445678899999999999987665444 457999999999999 67899999999999997

>KOG1407|consensus

Probab=99.98  E-value=1.6e-29  Score=198.52  Aligned_cols=234  Identities=18%  Similarity=0.325  Sum_probs=200.6

Q ss_pred             EEecCccCcEEEEEEcCC-CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         49 RTLRGHLAKIYAMHWGSD-SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      ...+||.+.|-.++|+|. ...+++++.|++|++||...+++...+....+.+ -+.|+|+|.+++.++.|..|.+.|.+
T Consensus        58 ~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r  136 (313)
T KOG1407|consen   58 LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDAR  136 (313)
T ss_pred             hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEec
Confidence            457899999999999975 5689999999999999999999988887666655 46799999999999999999999987


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEc-CCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFL-DDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDA  206 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg  206 (340)
                      +....  ...   .....+.-+.|. +++.++...+.|.|.|.....-+++..+.+|...+.|+.|+|+|++|++|+.|-
T Consensus       137 ~~~~~--~~~---~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADA  211 (313)
T KOG1407|consen  137 TYKIV--NEE---QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA  211 (313)
T ss_pred             cccee--ehh---cccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccc
Confidence            64311  111   122334445555 445677778889999999888899999999999999999999999999999999


Q ss_pred             cEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEE
Q psy15421        207 SAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLL  286 (340)
Q Consensus       207 ~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  286 (340)
                      .+.+||+++--|++.+..+.-+|..+.|+.+|++||+||.|..|-|=++.++..+.......   +...|+|+|...+||
T Consensus       212 lvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLA  288 (313)
T KOG1407|consen  212 LVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLA  288 (313)
T ss_pred             eeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceee
Confidence            99999999988999999999999999999999999999999999999999999998876654   478899999999999


Q ss_pred             EEeCC
Q psy15421        287 AGYDD  291 (340)
Q Consensus       287 ~g~~d  291 (340)
                      -+++|
T Consensus       289 yA~dd  293 (313)
T KOG1407|consen  289 YACDD  293 (313)
T ss_pred             EEecC
Confidence            88776

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=7.1e-29  Score=224.50  Aligned_cols=240  Identities=17%  Similarity=0.202  Sum_probs=183.0

Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEccCCCCce---------EEEEeecCCCcceEEEEEcC-C-CeEEEEeCCCeEEE
Q psy15421        100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNV---------RVSRELPGHTGYLSCCRFLD-D-NQIVTSSGDMSCAL  168 (340)
Q Consensus       100 i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~-~-~~l~~~~~d~~v~i  168 (340)
                      |.....++++..+++++.+.....|+...+....         .....+.+|.+.|.++.|++ + ..|++++.|++|++
T Consensus        23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI  102 (493)
T PTZ00421         23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG  102 (493)
T ss_pred             cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence            4444556666656666666666666643221100         00123568999999999986 4 57999999999999


Q ss_pred             EECCCC-------ceEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCE
Q psy15421        169 WDIETG-------QQCASFIGHTGDVMSLSLAPDM-RTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA  240 (340)
Q Consensus       169 wd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~  240 (340)
                      ||+..+       +.+..+.+|...|.+++|+|++ +++++|+.|++|++||+++++....+.+|...|.+++|+|++.+
T Consensus       103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~l  182 (493)
T PTZ00421        103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL  182 (493)
T ss_pred             EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCE
Confidence            999764       2456788999999999999985 68999999999999999999988899999999999999999999


Q ss_pred             EEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEe----CCCcEEEEeCCCce-eeeeeccC-Ccc
Q psy15421        241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY----DDFNCNVWDSMKTE-RAGILAGH-DNR  314 (340)
Q Consensus       241 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~----~d~~i~iw~~~~~~-~~~~~~~h-~~~  314 (340)
                      |++++.|+.|++||+++++.+..+..... .....+.|.|++..+++++    .|+.|++||..+.. +......+ ...
T Consensus       183 Latgs~Dg~IrIwD~rsg~~v~tl~~H~~-~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~  261 (493)
T PTZ00421        183 LCTTSKDKKLNIIDPRDGTIVSSVEAHAS-AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA  261 (493)
T ss_pred             EEEecCCCEEEEEECCCCcEEEEEecCCC-CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc
Confidence            99999999999999998877665432211 1245678898877777643    47999999987654 33333333 345


Q ss_pred             eEEEEECCCCCEEEEee-CCCcEEecC
Q psy15421        315 VSCLGVTEDGMAVATGS-WDSFLRIWN  340 (340)
Q Consensus       315 i~~~~~s~d~~~l~s~s-~D~~i~iW~  340 (340)
                      +....|++++.+|++|+ .|++|++||
T Consensus       262 ~~~~~~d~d~~~L~lggkgDg~Iriwd  288 (493)
T PTZ00421        262 LFIPFFDEDTNLLYIGSKGEGNIRCFE  288 (493)
T ss_pred             eEEEEEcCCCCEEEEEEeCCCeEEEEE
Confidence            66678999999999887 499999996

>KOG0308|consensus

Probab=99.97  E-value=1.4e-30  Score=227.55  Aligned_cols=276  Identities=21%  Similarity=0.354  Sum_probs=227.7

Q ss_pred             EEEEc-CCCCeEEEEeCCCeEEEEeCCCCC------eeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCc
Q psy15421         60 AMHWG-SDSRNLVSASQDGKLIVWDSYTTN------KVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGN  132 (340)
Q Consensus        60 ~~~~s-~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~  132 (340)
                      .+..+ |.+++|+|||.||.|++|+...-.      .+..+..|..||..+....+++-|++++.|-+|++|+.....  
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~--  106 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN--  106 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--
Confidence            44444 466789999999999999875322      255677899999999999999999999999999999986543  


Q ss_pred             eEEEEeecCCCcceEEEEE-cCC-CeEEEEeCCCeEEEEECCCCce--E--------EEEe-cCCCCeEEEEEcCCCCEE
Q psy15421        133 VRVSRELPGHTGYLSCCRF-LDD-NQIVTSSGDMSCALWDIETGQQ--C--------ASFI-GHTGDVMSLSLAPDMRTF  199 (340)
Q Consensus       133 ~~~~~~~~~~~~~v~~~~~-~~~-~~l~~~~~d~~v~iwd~~~~~~--~--------~~~~-~~~~~v~~~~~~~~~~~~  199 (340)
                      .....++..|..+|.|+.+ ..+ ..+++|+-|+.|.+||++++..  +        ..+. ++..++.+++.++.+..+
T Consensus       107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i  186 (735)
T KOG0308|consen  107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTII  186 (735)
T ss_pred             chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEE
Confidence            2234567789999999998 444 3567788899999999997722  1        1223 788899999999999999


Q ss_pred             EEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEc
Q psy15421        200 VSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS  279 (340)
Q Consensus       200 ~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  279 (340)
                      ++|+.++.+++||.++++.+..++||...|.++-.++||+.++|+|+||+|++||+...+++..+....  .+|.++..+
T Consensus       187 vsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~--e~VWaL~~~  264 (735)
T KOG0308|consen  187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK--EGVWALQSS  264 (735)
T ss_pred             EecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEecc--CceEEEeeC
Confidence            999999999999999998888899999999999999999999999999999999999999988875433  359999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        280 RSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       280 ~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      |+-..+.+|+.||.|..-|+.+......+...+.+|..+..+...+-+-.++.|+.|+-|
T Consensus       265 ~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW  324 (735)
T KOG0308|consen  265 PSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRW  324 (735)
T ss_pred             CCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceec
Confidence            999999999999999999988865555555667777777776544445667788888887

>KOG0294|consensus

Probab=99.97  E-value=3.9e-29  Score=201.32  Aligned_cols=239  Identities=21%  Similarity=0.358  Sum_probs=197.5

Q ss_pred             eEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC---eEEEEeCCCeE
Q psy15421         90 VHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN---QIVTSSGDMSC  166 (340)
Q Consensus        90 ~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~d~~v  166 (340)
                      +..+..|...|.+++.  ++.|+|+|+.|.+|+|||++...+    ...+..|.+.++++.|..+-   .|++|+.||.|
T Consensus        36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q----lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i  109 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ----LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI  109 (362)
T ss_pred             cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh----hcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence            4567789999998876  589999999999999999976542    33456789999999997553   79999999999


Q ss_pred             EEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeC
Q psy15421        167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSD  246 (340)
Q Consensus       167 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~  246 (340)
                      .+|+......+..+.+|.+.|+.++++|.+++.++.+.|+.+++||+-+|+.-...+ -......|.|+|.|.+|+.++.
T Consensus       110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~~  188 (362)
T KOG0294|consen  110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVSGR  188 (362)
T ss_pred             EEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCCEEEEEec
Confidence            999999999999999999999999999999999999999999999998887544333 1222344999999999999887


Q ss_pred             CCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEE--CCCC
Q psy15421        247 DATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV--TEDG  324 (340)
Q Consensus       247 d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~--s~d~  324 (340)
                      + .|-+|.+...........   ...+.++.|- ++..|++|.+|+.|++||..+..+...+.+|...|..+.+  .|++
T Consensus       189 ~-~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~  263 (362)
T KOG0294|consen  189 N-KIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH  263 (362)
T ss_pred             c-EEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence            5 577888876543322211   1236666665 5678999999999999998888889999999999999874  5788


Q ss_pred             CEEEEeeCCCcEEecC
Q psy15421        325 MAVATGSWDSFLRIWN  340 (340)
Q Consensus       325 ~~l~s~s~D~~i~iW~  340 (340)
                      .+|+|+|.||.|+|||
T Consensus       264 ~~lvTaSSDG~I~vWd  279 (362)
T KOG0294|consen  264 EYLVTASSDGFIKVWD  279 (362)
T ss_pred             eEEEEeccCceEEEEE
Confidence            9999999999999997

>KOG0277|consensus

Probab=99.97  E-value=3.7e-30  Score=201.44  Aligned_cols=238  Identities=18%  Similarity=0.332  Sum_probs=193.8

Q ss_pred             cCcEEEEEEcCCC-CeEEEEeCCCeEEEEeCC-CCCeeEEeeCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEccCCCC
Q psy15421         55 LAKIYAMHWGSDS-RNLVSASQDGKLIVWDSY-TTNKVHAIPLRSSWVMTCAYAP-SGSFVACGGLDNICSIYSLKTREG  131 (340)
Q Consensus        55 ~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~i~~v~~~~-~~~~l~~~~~d~~v~i~~~~~~~~  131 (340)
                      .+.+++++|++.. +.+++++.||+++|||.. ..+.++.++.|...|.++.|.+ ++..+++++.|++|++|+...+. 
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-  138 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-  138 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-
Confidence            5789999999864 578899999999999964 3346778889999999999997 46678888999999999976543 


Q ss_pred             ceEEEEeecCCCcceEEEEEcC--CCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcE
Q psy15421        132 NVRVSRELPGHTGYLSCCRFLD--DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAP-DMRTFVSGACDASA  208 (340)
Q Consensus       132 ~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~sg~~dg~i  208 (340)
                         -..++.+|...|....|++  .+.++++++|+.+++||++..-....+..|..++.|+.|+. +...++||+.|+.|
T Consensus       139 ---Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v  215 (311)
T KOG0277|consen  139 ---SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLV  215 (311)
T ss_pred             ---ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceE
Confidence               3456889999999999976  46789999999999999986554455889999999999986 56788999999999


Q ss_pred             EEEECCCCe-eeeEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCCc-EEEEeecCCcccceEEEEEcC-CCcE
Q psy15421        209 KLWDIRDGS-CKQTFPGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQ-ELAMYSHDNIICGITSVAFSR-SGRL  284 (340)
Q Consensus       209 ~~wd~~~~~-~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~-~~~~  284 (340)
                      +.||+++-+ ++..+.+|+-.|+.|.|+|. ...|||++.|-+++|||..... .+..+.+..  .=+..+.|++ +..+
T Consensus       216 r~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht--EFv~g~Dws~~~~~~  293 (311)
T KOG0277|consen  216 RGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT--EFVCGLDWSLFDPGQ  293 (311)
T ss_pred             EEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc--eEEeccccccccCce
Confidence            999998754 56788999999999999996 4589999999999999987432 222222211  1155667776 4678


Q ss_pred             EEEEeCCCcEEEEe
Q psy15421        285 LLAGYDDFNCNVWD  298 (340)
Q Consensus       285 l~~g~~d~~i~iw~  298 (340)
                      +|+.+-|..++||+
T Consensus       294 vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  294 VASTGWDELLYVWN  307 (311)
T ss_pred             eeecccccceeeec
Confidence            99999999999998

>KOG1539|consensus

Probab=99.97  E-value=4.7e-29  Score=223.49  Aligned_cols=289  Identities=17%  Similarity=0.342  Sum_probs=242.8

Q ss_pred             EEecCccCcEEEEEEcCCCC-eEEEEeCCCeEEEEeCCCCCeeEEee-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         49 RTLRGHLAKIYAMHWGSDSR-NLVSASQDGKLIVWDSYTTNKVHAIP-LRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      .+|+--.++|++++|..||+ .+++|+..|.+-+||++..+.+..+. .|.+.+....|-|....+++++.|+.+++|-.
T Consensus       238 ~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf  317 (910)
T KOG1539|consen  238 MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF  317 (910)
T ss_pred             EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence            44554469999999999986 56677778999999999888776655 88888999999999999999999999999999


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcC-CC-eEEEEeCCCeEEEEECCC-------------------------------
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLD-DN-QIVTSSGDMSCALWDIET-------------------------------  173 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d~~v~iwd~~~-------------------------------  173 (340)
                      +++++..+..+.-.||..+-.++.|.. ++ .+++++.|++.+.+++..                               
T Consensus       318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~  397 (910)
T KOG1539|consen  318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP  397 (910)
T ss_pred             eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence            888888888888888988888888863 33 467777787766665411                               


Q ss_pred             ----------------------------------CceEEEEecCC------CCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy15421        174 ----------------------------------GQQCASFIGHT------GDVMSLSLAPDMRTFVSGACDASAKLWDI  213 (340)
Q Consensus       174 ----------------------------------~~~~~~~~~~~------~~v~~~~~~~~~~~~~sg~~dg~i~~wd~  213 (340)
                                                        ...=.-...+.      ..+.+++.++.|++.+.|+..|+|-+|++
T Consensus       398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm  477 (910)
T KOG1539|consen  398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM  477 (910)
T ss_pred             ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEc
Confidence                                              00000001122      45789999999999999999999999999


Q ss_pred             CCCeeeeEe---cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeC
Q psy15421        214 RDGSCKQTF---PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYD  290 (340)
Q Consensus       214 ~~~~~~~~~---~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~  290 (340)
                      ++|-...++   +.|.++|++++.+.-++.+++++.+|.+++||.++...+..+.   ..+++.++.++.....++.+.+
T Consensus       478 QSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~---l~~~~~~iv~hr~s~l~a~~~d  554 (910)
T KOG1539|consen  478 QSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR---LGSSITGIVYHRVSDLLAIALD  554 (910)
T ss_pred             ccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec---cCCCcceeeeeehhhhhhhhcC
Confidence            999888888   6899999999999989999999999999999998776555543   3346889999999999999999


Q ss_pred             CCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        291 DFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       291 d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |..|+++|..+.+....+.||.+.|+.++|||||+.|++++.|++||+||
T Consensus       555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD  604 (910)
T KOG1539|consen  555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD  604 (910)
T ss_pred             ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence            99999999999999999999999999999999999999999999999998

>KOG1332|consensus

Probab=99.97  E-value=3.2e-30  Score=200.69  Aligned_cols=247  Identities=20%  Similarity=0.279  Sum_probs=201.4

Q ss_pred             EecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCC---CeeEEeeCCCCcEEEEEECC--CCCEEEEEeCCCeEEEE
Q psy15421         50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTT---NKVHAIPLRSSWVMTCAYAP--SGSFVACGGLDNICSIY  124 (340)
Q Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~i~~v~~~~--~~~~l~~~~~d~~v~i~  124 (340)
                      .-.+|.+.|.++...--|+.|+|+++|++|+|+.+...   +.+.++.+|.++|.-++|..  .|.+||+++.|+.|.||
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            34689999999998889999999999999999988654   45678999999999999986  79999999999999999


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCCC---eEEEEeCCCeEEEEECCCC-c--eEEEEecCCCCeEEEEEcCC---
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDN---QIVTSSGDMSCALWDIETG-Q--QCASFIGHTGDVMSLSLAPD---  195 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~d~~v~iwd~~~~-~--~~~~~~~~~~~v~~~~~~~~---  195 (340)
                      .-..+  ..........|...|+++.|.+.+   .|++++.||.|.+.+.+.. .  ......+|.-.|++++|.|.   
T Consensus        86 ke~~g--~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   86 KEENG--RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             ecCCC--chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            86543  444445566899999999997654   4788899999999988654 1  23345679999999999986   


Q ss_pred             C-----------CEEEEEeCCCcEEEEECCCCe--eeeEecCCCCCeEEEEEecCC----CEEEEEeCCCcEEEEeCcCC
Q psy15421        196 M-----------RTFVSGACDASAKLWDIRDGS--CKQTFPGHESDINAVTFFPNG----WAFATGSDDATCRLFDIRAD  258 (340)
Q Consensus       196 ~-----------~~~~sg~~dg~i~~wd~~~~~--~~~~~~~h~~~v~~v~~~~~~----~~l~s~s~d~~i~iwd~~~~  258 (340)
                      +           +.|++|+.|..|++|+..+++  ..+.+.+|..-|+.++|.|.-    .++||+|+||++.||..+..
T Consensus       164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e  243 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE  243 (299)
T ss_pred             ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence            3           569999999999999998763  345689999999999999963    57999999999999987632


Q ss_pred             cE-EEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEe
Q psy15421        259 QE-LAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD  298 (340)
Q Consensus       259 ~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~  298 (340)
                      .. -.....+...+.+..+.||+.|.+|++++.|..+.+|.
T Consensus       244 ~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  244 YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            11 11111122455689999999999999999999999997

>KOG0310|consensus

Probab=99.97  E-value=1.4e-29  Score=214.54  Aligned_cols=242  Identities=21%  Similarity=0.339  Sum_probs=205.5

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCC-CCEEEEEeCCCeEEEEEcc
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS-GSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~-~~~l~~~~~d~~v~i~~~~  127 (340)
                      +++..-.+.|++++|-.||+++++|+..|.|+|+|..+...+..++.|..++..+.|+|+ +..|++|+.|+.+++||+.
T Consensus        62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s  141 (487)
T KOG0310|consen   62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS  141 (487)
T ss_pred             hhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence            445566789999999999999999999999999996655566788999999999999986 5677888999999999998


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCC--eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDN--QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                      +..    .+..+.+|+.+|.+..+.+.+  .+++|+.||.|++||.+.......-..|..+|-.+.+-|.|..+++++ .
T Consensus       142 ~a~----v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-G  216 (487)
T KOG0310|consen  142 TAY----VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-G  216 (487)
T ss_pred             CcE----EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-C
Confidence            754    366889999999999887653  689999999999999988743333456999999999999999988865 4


Q ss_pred             CcEEEEECCCCe-eeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcE
Q psy15421        206 ASAKLWDIRDGS-CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRL  284 (340)
Q Consensus       206 g~i~~wd~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
                      ..||+||+-+|. .+.....|...|+|+.+..++..|+|||-|+.+++||+.+.+.+..+...   .+|.+++.+|+++.
T Consensus       217 n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---~pvLsiavs~dd~t  293 (487)
T KOG0310|consen  217 NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---GPVLSIAVSPDDQT  293 (487)
T ss_pred             CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---cceeeEEecCCCce
Confidence            689999998654 44555559999999999999999999999999999998888877766443   46999999999999


Q ss_pred             EEEEeCCCcEEEEe
Q psy15421        285 LLAGYDDFNCNVWD  298 (340)
Q Consensus       285 l~~g~~d~~i~iw~  298 (340)
                      ++.|..||.+.+=.
T Consensus       294 ~viGmsnGlv~~rr  307 (487)
T KOG0310|consen  294 VVIGMSNGLVSIRR  307 (487)
T ss_pred             EEEecccceeeeeh
Confidence            99999999987763

>KOG1036|consensus

Probab=99.97  E-value=1.5e-28  Score=197.52  Aligned_cols=268  Identities=21%  Similarity=0.323  Sum_probs=213.0

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceE
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVR  134 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~  134 (340)
                      .+.|.++.|+|.+..|+.++.||++++||+........+ .|..++++++|.+ ...+++|+.|+.|+.+|+.++..   
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~---   87 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE---   87 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc---
Confidence            578999999999999999999999999998776443333 4678899999987 66778999999999999988653   


Q ss_pred             EEEeecCCCcceEEEEEcC-CCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy15421        135 VSRELPGHTGYLSCCRFLD-DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDI  213 (340)
Q Consensus       135 ~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~  213 (340)
                        ..+..|...+.++.+.. .+.+++|++|++|++||.+.......+. ....|.++...  +..|+.|..|..+.+||+
T Consensus        88 --~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDL  162 (323)
T KOG1036|consen   88 --DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDL  162 (323)
T ss_pred             --eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEc
Confidence              23557999999998874 5789999999999999998744433332 34468877764  668999999999999999


Q ss_pred             CCCeeeeEe--cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCC----cEEEEe-ec------CCcccceEEEEEcC
Q psy15421        214 RDGSCKQTF--PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD----QELAMY-SH------DNIICGITSVAFSR  280 (340)
Q Consensus       214 ~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~-~~------~~~~~~i~~~~~s~  280 (340)
                      ++.......  ......++||++.|++.-++.+|-||.|.+=.+...    .....| -|      .....+|++++|||
T Consensus       163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp  242 (323)
T KOG1036|consen  163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP  242 (323)
T ss_pred             ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence            986533211  123456899999999889999999999876554432    111111 12      12345799999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeC
Q psy15421        281 SGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSW  332 (340)
Q Consensus       281 ~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~  332 (340)
                      -...|++|+.||.|.+||..+.+.+..+.+-+..|.+++|+.||..||.|+.
T Consensus       243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            9999999999999999999999999999888888999999999999998764

>KOG1408|consensus

Probab=99.97  E-value=5e-29  Score=220.01  Aligned_cols=288  Identities=19%  Similarity=0.268  Sum_probs=227.8

Q ss_pred             EEecCccCcEEEEEEcC-----------CCCeEEEEeCCCeEEEEeCCCCC---e----------eEE---------e--
Q psy15421         49 RTLRGHLAKIYAMHWGS-----------DSRNLVSASQDGKLIVWDSYTTN---K----------VHA---------I--   93 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~-----------~~~~l~s~~~d~~i~iwd~~~~~---~----------~~~---------~--   93 (340)
                      ..+--|...||++.--|           -..-++||+.|++||+||+..+.   .          +..         +  
T Consensus       363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d  442 (1080)
T KOG1408|consen  363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHD  442 (1080)
T ss_pred             eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhh
Confidence            34556777777776433           12258899999999999975311   0          000         0  


Q ss_pred             -------------eCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC----Ce
Q psy15421         94 -------------PLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD----NQ  156 (340)
Q Consensus        94 -------------~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~  156 (340)
                                   ....-.+.+++.+|+|.+||+|...|.++||++..-+    ....+.+|...|.|+.|+..    ..
T Consensus       443 ~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~----~~~~~eAHesEilcLeyS~p~~~~kL  518 (1080)
T KOG1408|consen  443 ASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE----YTCFMEAHESEILCLEYSFPVLTNKL  518 (1080)
T ss_pred             ccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh----hhhheecccceeEEEeecCchhhhHh
Confidence                         0011237899999999999999999999999987543    34556799999999999743    34


Q ss_pred             EEEEeCCCeEEEEECCCC-ceEEEEecCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCeeeeEecCC-----CCC
Q psy15421        157 IVTSSGDMSCALWDIETG-QQCASFIGHTGDVMSLSLAPDM--RTFVSGACDASAKLWDIRDGSCKQTFPGH-----ESD  228 (340)
Q Consensus       157 l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~~~sg~~dg~i~~wd~~~~~~~~~~~~h-----~~~  228 (340)
                      |++++.|+-|.+||+..+ ..++++-+|...|+++.|.-++  ..+++++.|+.|.+=-.+.......+..|     ...
T Consensus       519 LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktT  598 (1080)
T KOG1408|consen  519 LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTT  598 (1080)
T ss_pred             hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccce
Confidence            778899999999998654 4567788999999999998877  67899999999876433321112223322     245


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeec-CCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeee
Q psy15421        229 INAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSH-DNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGI  307 (340)
Q Consensus       229 v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~  307 (340)
                      +..+++.|..++++++++|+.|+|||+.+++....|.. ..+...+..+...|.|-|+|+.+.|.++.++|..+++++..
T Consensus       599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~  678 (1080)
T KOG1408|consen  599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ  678 (1080)
T ss_pred             EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence            78999999999999999999999999999888877642 33334577899999999999999999999999999999999


Q ss_pred             eccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        308 LAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       308 ~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +.||.+.|+.+.|++|=+.|+|.|.||+|.||.
T Consensus       679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~  711 (1080)
T KOG1408|consen  679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK  711 (1080)
T ss_pred             hcCcchheeeeeecccchhheeecCCceEEEEE
Confidence            999999999999999999999999999999994

>KOG1274|consensus

Probab=99.97  E-value=5.6e-28  Score=218.77  Aligned_cols=274  Identities=18%  Similarity=0.275  Sum_probs=221.6

Q ss_pred             cCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCC-CeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCC
Q psy15421         52 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTT-NKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTRE  130 (340)
Q Consensus        52 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~  130 (340)
                      .+|+..-+.++|.|+|+.|++++.||.|++|+.... +...++..+...|.+++  .++++|++|+.+++|.+|.+..++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia--~~s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIA--CYSNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEe--ecccceEEeeccceEEEeeCCCCC
Confidence            379999999999999999999999999999987655 44455554666666654  456699999999999999998766


Q ss_pred             CceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q psy15421        131 GNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAK  209 (340)
Q Consensus       131 ~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~  209 (340)
                      ..-.+.    ..+-++..+++..+ ..++.|+.|-.|++-++........+.+|.++|.++.|+|+++++++.+.||.|+
T Consensus        88 ~~~iL~----Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~  163 (933)
T KOG1274|consen   88 EDTILA----RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQ  163 (933)
T ss_pred             ccceee----eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEE
Confidence            442221    23445677777655 4678888899999999999888899999999999999999999999999999999


Q ss_pred             EEECCCCeeeeEecCC--------CCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCC
Q psy15421        210 LWDIRDGSCKQTFPGH--------ESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRS  281 (340)
Q Consensus       210 ~wd~~~~~~~~~~~~h--------~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  281 (340)
                      +||+.++.+..++.+-        ...+..++|+|++..|+..+.|+.|++|+.........+........++.+.|+|.
T Consensus       164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn  243 (933)
T KOG1274|consen  164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN  243 (933)
T ss_pred             EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence            9999998876665431        34567899999988999999999999999998888777765554445899999999


Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCc
Q psy15421        282 GRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF  335 (340)
Q Consensus       282 ~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~  335 (340)
                      |+|||+++-||.|.|||..+.+.    ..-...|.|++|.|+...+---...|+
T Consensus       244 G~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~  293 (933)
T KOG1274|consen  244 GKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGT  293 (933)
T ss_pred             CcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccc
Confidence            99999999999999999887322    223478999999999876554333333

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.6e-27  Score=216.87  Aligned_cols=221  Identities=15%  Similarity=0.202  Sum_probs=172.2

Q ss_pred             EeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCc--------eEEEEecCC
Q psy15421        115 GGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQ--------QCASFIGHT  184 (340)
Q Consensus       115 ~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~--------~~~~~~~~~  184 (340)
                      |+.++.+++|+....    .....+.+|...|.++.|++.  ..|++|+.|++|++||+.++.        ....+.+|.
T Consensus        50 GG~~gvI~L~~~~r~----~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~  125 (568)
T PTZ00420         50 GGLIGAIRLENQMRK----PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK  125 (568)
T ss_pred             CCceeEEEeeecCCC----ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence            456777899986532    245667899999999999864  578999999999999997542        234577899


Q ss_pred             CCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEE
Q psy15421        185 GDVMSLSLAPDMRT-FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAM  263 (340)
Q Consensus       185 ~~v~~~~~~~~~~~-~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  263 (340)
                      ..|.+++|+|++.. +++++.|++|++||+++++....+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t  204 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS  204 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence            99999999998875 4689999999999999988777775 567899999999999999999999999999998887765


Q ss_pred             ee-cCCcc--cceEEEEEcCCCcEEEEEeCCC----cEEEEeCCC-ceeeeee--ccCCcceEEEEECCCCCEEEEeeCC
Q psy15421        264 YS-HDNII--CGITSVAFSRSGRLLLAGYDDF----NCNVWDSMK-TERAGIL--AGHDNRVSCLGVTEDGMAVATGSWD  333 (340)
Q Consensus       264 ~~-~~~~~--~~i~~~~~s~~~~~l~~g~~d~----~i~iw~~~~-~~~~~~~--~~h~~~i~~~~~s~d~~~l~s~s~D  333 (340)
                      +. |....  ..+....|++++.+|++++.|+    +|++||..+ .+++..+  ..+.+.+......++|.++++|+.|
T Consensus       205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD  284 (568)
T PTZ00420        205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD  284 (568)
T ss_pred             EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence            53 32211  1133345678999999877664    799999875 4444443  3334445555556779999999999


Q ss_pred             CcEEecC
Q psy15421        334 SFLRIWN  340 (340)
Q Consensus       334 ~~i~iW~  340 (340)
                      ++||+|+
T Consensus       285 ~tIr~~e  291 (568)
T PTZ00420        285 GNCRYYQ  291 (568)
T ss_pred             CeEEEEE
Confidence            9999995

>KOG4283|consensus

Probab=99.97  E-value=4.3e-28  Score=193.73  Aligned_cols=282  Identities=17%  Similarity=0.337  Sum_probs=210.7

Q ss_pred             ecCccCcEEEEEEcC-CCCeEEEEeCCCeEEEEeCCCCC----------eeEEe-----eCCCCcEEEEEECC-CCCEEE
Q psy15421         51 LRGHLAKIYAMHWGS-DSRNLVSASQDGKLIVWDSYTTN----------KVHAI-----PLRSSWVMTCAYAP-SGSFVA  113 (340)
Q Consensus        51 ~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~----------~~~~~-----~~~~~~i~~v~~~~-~~~~l~  113 (340)
                      -+-|.+.|.++...+ .+++++||+.||.|.+||++...          .+..+     .+|.-.|.++-|=| |.-++.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            457899999999987 68999999999999999986543          11111     24455677766655 677889


Q ss_pred             EEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC----CCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEE
Q psy15421        114 CGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD----DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMS  189 (340)
Q Consensus       114 ~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  189 (340)
                      +++.|.++++||.++-..-..  .   .-++.|..-.+++    ...+++|..|-+|++.|+.+|.....+.+|.+.|.+
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~--F---~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla  193 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVD--F---KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA  193 (397)
T ss_pred             cccccceEEEeecccceeeEE--e---ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence            999999999999987532211  1   1223343333332    224667777899999999999999999999999999


Q ss_pred             EEEcCCCCE-EEEEeCCCcEEEEECCCC-eeeeEe--------------cCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy15421        190 LSLAPDMRT-FVSGACDASAKLWDIRDG-SCKQTF--------------PGHESDINAVTFFPNGWAFATGSDDATCRLF  253 (340)
Q Consensus       190 ~~~~~~~~~-~~sg~~dg~i~~wd~~~~-~~~~~~--------------~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iw  253 (340)
                      +.|+|...+ +++|+.||.|++||++.- -|...+              ..|.+.++.++|..++.++++++.|..+++|
T Consensus       194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w  273 (397)
T KOG4283|consen  194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW  273 (397)
T ss_pred             EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence            999998764 679999999999999754 222222              3577889999999999999999999999999


Q ss_pred             eCcCCcE-EEEee---cCCcc-cceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEE
Q psy15421        254 DIRADQE-LAMYS---HDNII-CGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVA  328 (340)
Q Consensus       254 d~~~~~~-~~~~~---~~~~~-~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~  328 (340)
                      +..++.. +..+.   +.... ..+. +. +.+...++---.++.+.+++...++.+..+..|...|.|.++-|+=+...
T Consensus       274 n~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~  351 (397)
T KOG4283|consen  274 NMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCF  351 (397)
T ss_pred             ecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhh
Confidence            9876543 22221   11111 0111 11 22333333333458899999999999999999999999999999999999


Q ss_pred             EeeCCCcEEec
Q psy15421        329 TGSWDSFLRIW  339 (340)
Q Consensus       329 s~s~D~~i~iW  339 (340)
                      +|+.|++|.-|
T Consensus       352 tg~~d~ni~~w  362 (397)
T KOG4283|consen  352 TGDMNGNIYMW  362 (397)
T ss_pred             ccccCCccccc
Confidence            99999999888

>KOG0293|consensus

Probab=99.97  E-value=5.7e-29  Score=206.89  Aligned_cols=246  Identities=22%  Similarity=0.330  Sum_probs=205.5

Q ss_pred             eEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEE
Q psy15421         90 VHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCAL  168 (340)
Q Consensus        90 ~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~i  168 (340)
                      .+.+..|...|.-+.||++|+|||+++.|.+..+|.+... ...++..++.+|...|..+.|+|+ .++++|+.|..+.+
T Consensus       217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d-~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD-VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecC-cceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence            4566788899999999999999999999999999998754 447778899999999999999876 57889999999999


Q ss_pred             EECCCCceEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCC-CCeEEEEEecCCCEEEEEeC
Q psy15421        169 WDIETGQQCASFI-GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE-SDINAVTFFPNGWAFATGSD  246 (340)
Q Consensus       169 wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~s~  246 (340)
                      ||+.+|.....+. ++...+.+++|.||+..+++|+.|++|..||+. |.....+++-. ..|.+++..+||+++++...
T Consensus       296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~  374 (519)
T KOG0293|consen  296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTV  374 (519)
T ss_pred             ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence            9999998766554 245789999999999999999999999999986 44455565543 46899999999999999999


Q ss_pred             CCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCc--ceEEEEECC-C
Q psy15421        247 DATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDN--RVSCLGVTE-D  323 (340)
Q Consensus       247 d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~--~i~~~~~s~-d  323 (340)
                      |..|++++...........   ...+|+++..|.+++++++.-.+..+.+||++....+..+.||..  .|-.=+|-. +
T Consensus       375 d~~i~l~~~e~~~dr~lis---e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~  451 (519)
T KOG0293|consen  375 DKKIRLYNREARVDRGLIS---EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGN  451 (519)
T ss_pred             ccceeeechhhhhhhcccc---ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCC
Confidence            9999999987544432222   224699999999999999999999999999998778888889864  344445643 5


Q ss_pred             CCEEEEeeCCCcEEecC
Q psy15421        324 GMAVATGSWDSFLRIWN  340 (340)
Q Consensus       324 ~~~l~s~s~D~~i~iW~  340 (340)
                      ..+++|||.|+.|+||+
T Consensus       452 ~~fiaSGSED~kvyIWh  468 (519)
T KOG0293|consen  452 DKFIASGSEDSKVYIWH  468 (519)
T ss_pred             cceEEecCCCceEEEEE
Confidence            58999999999999995

>KOG0643|consensus

Probab=99.97  E-value=2.6e-28  Score=192.38  Aligned_cols=249  Identities=20%  Similarity=0.285  Sum_probs=196.0

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC-----CeEE
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD-----NICS  122 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d-----~~v~  122 (340)
                      .-++.||++.|++++.+-+.+.++||+.|.+++|||+.+++.+..++. ..+|..+.|+++|++++....+     ..|.
T Consensus        45 lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~  123 (327)
T KOG0643|consen   45 LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVS  123 (327)
T ss_pred             eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEE
Confidence            468999999999999999999999999999999999999999988875 4668999999999998876543     5688


Q ss_pred             EEEccCCCCc---eEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCce-EEEEecCCCCeEEEEEcCCCC
Q psy15421        123 IYSLKTREGN---VRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQ-CASFIGHTGDVMSLSLAPDMR  197 (340)
Q Consensus       123 i~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~  197 (340)
                      +++++.....   ..+...++.+.+.+....|.+. ..|++|..||.|.+||+++|+. +.....|...++.++++|+..
T Consensus       124 ~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T  203 (327)
T KOG0643|consen  124 VFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT  203 (327)
T ss_pred             EEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc
Confidence            8998743311   1123455667777777888765 5688999999999999999865 445567999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeC-CCc-EEEEeCcCCcEEEEe----------e
Q psy15421        198 TFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSD-DAT-CRLFDIRADQELAMY----------S  265 (340)
Q Consensus       198 ~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-d~~-i~iwd~~~~~~~~~~----------~  265 (340)
                      +++++|.|.+-++||+++-++.+++. ...||++.+++|....++.|+. +.. |.-=+.+.++-...+          .
T Consensus       204 ~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr  282 (327)
T KOG0643|consen  204 YFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR  282 (327)
T ss_pred             eEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc
Confidence            99999999999999999998888887 5679999999997666655543 321 222222222211111          1


Q ss_pred             cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEe
Q psy15421        266 HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD  298 (340)
Q Consensus       266 ~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~  298 (340)
                      ...+-.+|++++|||+|+..++|+.||.|++.-
T Consensus       283 vkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~  315 (327)
T KOG0643|consen  283 VKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH  315 (327)
T ss_pred             ccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence            234556799999999999999999999999874

>KOG0305|consensus

Probab=99.97  E-value=5.7e-28  Score=211.79  Aligned_cols=247  Identities=18%  Similarity=0.295  Sum_probs=210.9

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeC-CCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPL-RSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      +....-+.+.|+++.|+++|.+|+.|..+|.|.|||..+.+.+..+.. |...|.+++|.  +..+.+|+.++.|..+|+
T Consensus       210 ~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dv  287 (484)
T KOG0305|consen  210 TELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDV  287 (484)
T ss_pred             EEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEE
Confidence            333444488999999999999999999999999999999999988888 89999999998  788999999999999999


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCC-CEEEEEe-
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDM-RTFVSGA-  203 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~sg~-  203 (340)
                      +..+....   .+.+|...|..+.|.+++ ++++|+.|+.+.|||....++...+..|.+.|.+++|+|-. .+|++|+ 
T Consensus       288 R~~~~~~~---~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG  364 (484)
T KOG0305|consen  288 RISQHVVS---TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG  364 (484)
T ss_pred             ecchhhhh---hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC
Confidence            87654332   377899999999998764 78899999999999998888888999999999999999964 4677644 


Q ss_pred             -CCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEE--EeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcC
Q psy15421        204 -CDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFAT--GSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSR  280 (340)
Q Consensus       204 -~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s--~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  280 (340)
                       .|+.|++||..+++.+..+. -...|..|.|++..+.|++  |..+..|.||++.+.+++..+.  .+...|..++++|
T Consensus       365 s~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~--gH~~RVl~la~SP  441 (484)
T KOG0305|consen  365 SADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL--GHTSRVLYLALSP  441 (484)
T ss_pred             CcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec--CCcceeEEEEECC
Confidence             69999999999999887776 3567999999999877765  4457789999998877666553  3345699999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCc
Q psy15421        281 SGRLLLAGYDDFNCNVWDSMKT  302 (340)
Q Consensus       281 ~~~~l~~g~~d~~i~iw~~~~~  302 (340)
                      ||..+++|+.|.++++|++...
T Consensus       442 dg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  442 DGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCCEEEEecccCcEEeccccCC
Confidence            9999999999999999998764

>KOG0973|consensus

Probab=99.97  E-value=2.4e-28  Score=225.05  Aligned_cols=244  Identities=23%  Similarity=0.324  Sum_probs=202.8

Q ss_pred             CCcEEEEEECCCCCEEEEEe--CCCeEEEEEccCCC-------C-ceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCe
Q psy15421         97 SSWVMTCAYAPSGSFVACGG--LDNICSIYSLKTRE-------G-NVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMS  165 (340)
Q Consensus        97 ~~~i~~v~~~~~~~~l~~~~--~d~~v~i~~~~~~~-------~-~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~  165 (340)
                      ...|.++..+|++..+++||  .|+.++||+...-.       . ..........|.+.|.|++|++++ +|++|+.|+.
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~   92 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL   92 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence            34588999999999999999  89999999865311       1 123445667899999999998776 6888999999


Q ss_pred             EEEEECCC------------------CceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCC
Q psy15421        166 CALWDIET------------------GQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHES  227 (340)
Q Consensus       166 v~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~  227 (340)
                      |.+|....                  .+.+..+.+|...|..++|+|++.++++++.|++|.+|+.++.+....+.+|.+
T Consensus        93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s  172 (942)
T KOG0973|consen   93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS  172 (942)
T ss_pred             EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc
Confidence            99998762                  124567889999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeec----CCcccceEEEEEcCCCcEEEEEe----CCCcEEEEeC
Q psy15421        228 DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSH----DNIICGITSVAFSRSGRLLLAGY----DDFNCNVWDS  299 (340)
Q Consensus       228 ~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~g~----~d~~i~iw~~  299 (340)
                      .|..+.|+|-|+||||-+.|++|++|++......+....    .....-...+.|||||++|++.-    .-..+.|.+.
T Consensus       173 ~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR  252 (942)
T KOG0973|consen  173 LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER  252 (942)
T ss_pred             cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence            999999999999999999999999999776554443321    11122377899999999999843    2346889999


Q ss_pred             CCceeeeeeccCCcceEEEEECCC-----CC------------EEEEeeCCCcEEecC
Q psy15421        300 MKTERAGILAGHDNRVSCLGVTED-----GM------------AVATGSWDSFLRIWN  340 (340)
Q Consensus       300 ~~~~~~~~~~~h~~~i~~~~~s~d-----~~------------~l~s~s~D~~i~iW~  340 (340)
                      .+++....+.||..++.++.|+|.     ..            .+|+||.|++|.||+
T Consensus       253 ~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~  310 (942)
T KOG0973|consen  253 GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN  310 (942)
T ss_pred             CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence            899988999999999999999973     11            588999999999995

>KOG0288|consensus

Probab=99.97  E-value=7e-29  Score=206.31  Aligned_cols=242  Identities=25%  Similarity=0.373  Sum_probs=201.7

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccC
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKT  128 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~  128 (340)
                      .+|.|-.+.|+++.|.++++.+++.+.|+.+++||+...+...++.+|.+.|.++.|......+++|+.|.+++.||+..
T Consensus       213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k  292 (459)
T KOG0288|consen  213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK  292 (459)
T ss_pred             hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh
Confidence            56778888999999999999999999999999999999999999999999999999998877799999999999999975


Q ss_pred             CCCceEEEEe-ecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q psy15421        129 REGNVRVSRE-LPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDAS  207 (340)
Q Consensus       129 ~~~~~~~~~~-~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~  207 (340)
                      ..    ...+ +++  +.+..+... ...++++-.|+.|++||.++.........+. .|.++..++++..+++++.|.+
T Consensus       293 ~~----C~kt~l~~--S~cnDI~~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdt  364 (459)
T KOG0288|consen  293 AY----CSKTVLPG--SQCNDIVCS-ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDT  364 (459)
T ss_pred             hh----eecccccc--ccccceEec-ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCc
Confidence            32    1111 121  112222211 3346777789999999999988887776665 8999999999999999999999


Q ss_pred             EEEEECCCCeeeeEecCC----CCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCc
Q psy15421        208 AKLWDIRDGSCKQTFPGH----ESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR  283 (340)
Q Consensus       208 i~~wd~~~~~~~~~~~~h----~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  283 (340)
                      +++.|+++......+...    ....+.+.|+|++.|+|+||.||.|+||++.+++............+|++++|+|.|.
T Consensus       365 l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~  444 (459)
T KOG0288|consen  365 LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGS  444 (459)
T ss_pred             eeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCc
Confidence            999999998777666432    2357889999999999999999999999999988877665444334699999999999


Q ss_pred             EEEEEeCCCcEEEEe
Q psy15421        284 LLLAGYDDFNCNVWD  298 (340)
Q Consensus       284 ~l~~g~~d~~i~iw~  298 (340)
                      .|++++.++.+.+|.
T Consensus       445 ~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  445 GLLSADKQKAVTLWT  459 (459)
T ss_pred             hhhcccCCcceEecC
Confidence            999999999999993

>KOG0308|consensus

Probab=99.97  E-value=7.6e-29  Score=216.69  Aligned_cols=291  Identities=19%  Similarity=0.284  Sum_probs=230.6

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCC--CeeEEeeCCCCcEEEEEE-CCCCCEEEEEeCCCeEEEE
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTT--NKVHAIPLRSSWVMTCAY-APSGSFVACGGLDNICSIY  124 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~i~~v~~-~~~~~~l~~~~~d~~v~i~  124 (340)
                      ..+++.|.+-|.++....+++.|+|+|.|-+|++|+....  -+..++..|.+.|.++++ .++...+|+||-|+.|.+|
T Consensus        66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflW  145 (735)
T KOG0308|consen   66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLW  145 (735)
T ss_pred             hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEE
Confidence            4568899999999999999999999999999999999877  466788999999999999 7889999999999999999


Q ss_pred             EccCCCC------ceEEEEeec-CCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCC
Q psy15421        125 SLKTREG------NVRVSRELP-GHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDM  196 (340)
Q Consensus       125 ~~~~~~~------~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  196 (340)
                      |+.++..      +......+. ++...+.++...+.+ .+++|+..+.+++||.++++.+..+.+|+..|.++..++||
T Consensus       146 Din~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDG  225 (735)
T KOG0308|consen  146 DINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDG  225 (735)
T ss_pred             EccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCC
Confidence            9987532      111112233 777888888776655 57778889999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEE
Q psy15421        197 RTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSV  276 (340)
Q Consensus       197 ~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~  276 (340)
                      +.++++|.||+|++||+...+|+.++..|...|+++..+|+=.++.+|+.||.|..=|+++......+-.+  ..+|..+
T Consensus       226 t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~l  303 (735)
T KOG0308|consen  226 TRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLKL  303 (735)
T ss_pred             CeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999875433222111  1245666


Q ss_pred             EEcCCCcEEEEEeCCCcEEEEeCCCc-------eeeeeec---c--------C------CcceEEEEECCCCCEEEEeeC
Q psy15421        277 AFSRSGRLLLAGYDDFNCNVWDSMKT-------ERAGILA---G--------H------DNRVSCLGVTEDGMAVATGSW  332 (340)
Q Consensus       277 ~~s~~~~~l~~g~~d~~i~iw~~~~~-------~~~~~~~---~--------h------~~~i~~~~~s~d~~~l~s~s~  332 (340)
                      ..+....-+-+++.|+.|+-|..+-.       .......   .        |      ..+|..-+.-.|.+++++=..
T Consensus       304 ~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa  383 (735)
T KOG0308|consen  304 HLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDA  383 (735)
T ss_pred             hhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecC
Confidence            66654444467788888998864311       1111000   0        1      012233344567788999999


Q ss_pred             CCcEEecC
Q psy15421        333 DSFLRIWN  340 (340)
Q Consensus       333 D~~i~iW~  340 (340)
                      +|++.+||
T Consensus       384 ~gnv~lwD  391 (735)
T KOG0308|consen  384 KGNVALWD  391 (735)
T ss_pred             CCCEEEEE
Confidence            99999997

>KOG0275|consensus

Probab=99.96  E-value=5.7e-29  Score=201.29  Aligned_cols=242  Identities=19%  Similarity=0.311  Sum_probs=202.6

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCce----EEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEEC
Q psy15421         97 SSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNV----RVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDI  171 (340)
Q Consensus        97 ~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~  171 (340)
                      .+.+-|..|+|||.||++|+.||.+.+|+..++.-..    .....+.-+...|.|+.|+.+ ..+++|+.||.|++|.+
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence            3456788999999999999999999999997754221    112234456778999999876 46889999999999999


Q ss_pred             CCCceEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy15421        172 ETGQQCASFI-GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATC  250 (340)
Q Consensus       172 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i  250 (340)
                      ++|+++++|. +|...|+|+.|+.|+..+++++.|.++++--+.+|++.+.+.||.+-|+.+.|.++|.++++++.||+|
T Consensus       293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtv  372 (508)
T KOG0275|consen  293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTV  372 (508)
T ss_pred             ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccE
Confidence            9999999887 799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCcCCcEEEEeecCCcccceEEEEEcCCC-cEEEEEeCCCcEEEEeCCCceeeeeeccC---CcceEEEEECCCCCE
Q psy15421        251 RLFDIRADQELAMYSHDNIICGITSVAFSRSG-RLLLAGYDDFNCNVWDSMKTERAGILAGH---DNRVSCLGVTEDGMA  326 (340)
Q Consensus       251 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~d~~i~iw~~~~~~~~~~~~~h---~~~i~~~~~s~d~~~  326 (340)
                      ++|+.++..++.++.......+|+++-.-|.+ ..++++....++.|.+. .+..+..+..-   .+.-.+...||.|.+
T Consensus       373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGew  451 (508)
T KOG0275|consen  373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEW  451 (508)
T ss_pred             EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcE
Confidence            99999999888888766666678888887754 45666777778999984 56666655432   233445568999999


Q ss_pred             EEEeeCCCcEEec
Q psy15421        327 VATGSWDSFLRIW  339 (340)
Q Consensus       327 l~s~s~D~~i~iW  339 (340)
                      +...+.|+.++.+
T Consensus       452 iYcigED~vlYCF  464 (508)
T KOG0275|consen  452 IYCIGEDGVLYCF  464 (508)
T ss_pred             EEEEccCcEEEEE
Confidence            9999999987754

>KOG0289|consensus

Probab=99.96  E-value=7.1e-28  Score=201.54  Aligned_cols=251  Identities=20%  Similarity=0.276  Sum_probs=207.1

Q ss_pred             eEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q psy15421         45 MRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIY  124 (340)
Q Consensus        45 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~  124 (340)
                      .+...+|+||+..|+.+.|+++...+++++.|..|+||.+...........|..+|..+..+|.|.||++++.|++.-+.
T Consensus       251 ~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fs  330 (506)
T KOG0289|consen  251 NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFS  330 (506)
T ss_pred             hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEE
Confidence            34457899999999999999999999999999999999988887788888999999999999999999999999999999


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCCCe-EEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEe
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGA  203 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~  203 (340)
                      +++++....+...  ....-.+.+..|++++. |.+|..|+.+++||+.+...+..|.+|.++|.+++|+-+|.++++++
T Consensus       331 d~~~g~~lt~vs~--~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a  408 (506)
T KOG0289|consen  331 DISSGSQLTVVSD--ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA  408 (506)
T ss_pred             EccCCcEEEEEee--ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe
Confidence            9877643222221  12223467788888875 56788899999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEECCCCeeeeEecCC-CCCeEEEEEecCCCEEEEEeCCCcEEEEeCcC--CcEEEEeecCCcccceEEEEEcC
Q psy15421        204 CDASAKLWDIRDGSCKQTFPGH-ESDINAVTFFPNGWAFATGSDDATCRLFDIRA--DQELAMYSHDNIICGITSVAFSR  280 (340)
Q Consensus       204 ~dg~i~~wd~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~--~~~~~~~~~~~~~~~i~~~~~s~  280 (340)
                      .|+.|++||+|.-+..++++-. ..+++++.|++.|.+++.++.|-.|++++-.+  ......+.  .+....+.+.|..
T Consensus       409 dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~--~~sg~st~v~Fg~  486 (506)
T KOG0289|consen  409 DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA--DHSGLSTGVRFGE  486 (506)
T ss_pred             cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh--hcccccceeeecc
Confidence            9999999999988777776532 23799999999999999999887777776432  33333322  1222467899999


Q ss_pred             CCcEEEEEeCCCcEEEEeC
Q psy15421        281 SGRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       281 ~~~~l~~g~~d~~i~iw~~  299 (340)
                      ..+++++++-|..++++.+
T Consensus       487 ~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  487 HAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             cceEEeeccchhheEEeec
Confidence            9999999999999888753

>KOG0641|consensus

Probab=99.96  E-value=1.8e-26  Score=178.10  Aligned_cols=248  Identities=23%  Similarity=0.365  Sum_probs=196.5

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeC--CCCC---eeEEeeCCCCcEEEEEECCC----CCEEEEEeCCC
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS--YTTN---KVHAIPLRSSWVMTCAYAPS----GSFVACGGLDN  119 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~--~~~~---~~~~~~~~~~~i~~v~~~~~----~~~l~~~~~d~  119 (340)
                      ++-+-|.+.|+|.+|+|+|.+|++|+.|++|++.-.  .+.+   ...++..|.+.|..++|-.+    +..|++++. |
T Consensus        83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga-g  161 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA-G  161 (350)
T ss_pred             eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC-C
Confidence            455679999999999999999999999999998743  3332   23567789999999999643    556666654 3


Q ss_pred             eEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEec--C-----CCCeEEEEE
Q psy15421        120 ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIG--H-----TGDVMSLSL  192 (340)
Q Consensus       120 ~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~-----~~~v~~~~~  192 (340)
                      -++||-..-+.+.  ....+.+|++.+..+...++-.+++|+.|.+|++||++-+.++..+-.  |     .+.|.+++.
T Consensus       162 dc~iy~tdc~~g~--~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v  239 (350)
T KOG0641|consen  162 DCKIYITDCGRGQ--GFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV  239 (350)
T ss_pred             cceEEEeecCCCC--cceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence            4566665544333  235678999998887666777899999999999999998877766532  2     245889999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCC--cEEEEeecCCcc
Q psy15421        193 APDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD--QELAMYSHDNII  270 (340)
Q Consensus       193 ~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~~~~~  270 (340)
                      .|.++++++|-.|....+||++-++.++.+..|...|.||.|+|...|+++++.|..|++-|+...  ..+..+-...+.
T Consensus       240 dpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehk  319 (350)
T KOG0641|consen  240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHK  319 (350)
T ss_pred             CCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEecc
Confidence            999999999999999999999999999999999999999999999999999999999999998642  111111111222


Q ss_pred             cceEEEEEcCCCcEEEEEeCCCcEEEEeC
Q psy15421        271 CGITSVAFSRSGRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       271 ~~i~~~~~s~~~~~l~~g~~d~~i~iw~~  299 (340)
                      ..+..+.|+|..--+++.+.|.++.+|..
T Consensus       320 dk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  320 DKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             CceEEEEecCccceeeeccCcceEEEecc
Confidence            34667899999988999999999999964

>KOG0264|consensus

Probab=99.96  E-value=8.9e-28  Score=202.13  Aligned_cols=245  Identities=25%  Similarity=0.363  Sum_probs=194.4

Q ss_pred             eCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEccCCCCce------EEEEeecCCCcceEEEEEcC--CCeEEEEeCCC
Q psy15421         94 PLRSSWVMTCAYAPSG-SFVACGGLDNICSIYSLKTREGNV------RVSRELPGHTGYLSCCRFLD--DNQIVTSSGDM  164 (340)
Q Consensus        94 ~~~~~~i~~v~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~  164 (340)
                      -.|.+.|..+++-|+. ..+|+.+..+.+.|||........      +....+.+|...-..+.|+.  .+.+++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            3577788888888865 556777888999999986533222      23336678887555667764  46799999999


Q ss_pred             eEEEEECCCCce-------EEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECC--CCeeeeEecCCCCCeEEEEE
Q psy15421        165 SCALWDIETGQQ-------CASFIGHTGDVMSLSLAPD-MRTFVSGACDASAKLWDIR--DGSCKQTFPGHESDINAVTF  234 (340)
Q Consensus       165 ~v~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~-~~~~~sg~~dg~i~~wd~~--~~~~~~~~~~h~~~v~~v~~  234 (340)
                      +|.+||+.....       ...+.+|...|..++|+|- ..+|++++.|+.+.|||+|  +.++....++|.++|+|++|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f  280 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF  280 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence            999999975432       3457789999999999994 5578899999999999999  45566778899999999999


Q ss_pred             ec-CCCEEEEEeCCCcEEEEeCcCCc-EEEEeecCCcccceEEEEEcCC-CcEEEEEeCCCcEEEEeCCCc---------
Q psy15421        235 FP-NGWAFATGSDDATCRLFDIRADQ-ELAMYSHDNIICGITSVAFSRS-GRLLLAGYDDFNCNVWDSMKT---------  302 (340)
Q Consensus       235 ~~-~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~-~~~l~~g~~d~~i~iw~~~~~---------  302 (340)
                      .| ++..|||||.|++|.+||+|+.. ++..+  ..+...|.+|.|+|. ...||+++.|+.+.+||+...         
T Consensus       281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~--e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda  358 (422)
T KOG0264|consen  281 NPFNEFILATGSADKTVALWDLRNLNKPLHTF--EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA  358 (422)
T ss_pred             CCCCCceEEeccCCCcEEEeechhcccCceec--cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence            99 56789999999999999999643 33333  344557999999997 457888999999999997532         


Q ss_pred             -----eeeeeeccCCcceEEEEECCCCC-EEEEeeCCCcEEecC
Q psy15421        303 -----ERAGILAGHDNRVSCLGVTEDGM-AVATGSWDSFLRIWN  340 (340)
Q Consensus       303 -----~~~~~~~~h~~~i~~~~~s~d~~-~l~s~s~D~~i~iW~  340 (340)
                           +.+....||...|+.+.|.|+.. .|+|.+.|+.+.||.
T Consensus       359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~  402 (422)
T KOG0264|consen  359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ  402 (422)
T ss_pred             ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence                 22356679999999999999775 688999999999995

>KOG0283|consensus

Probab=99.96  E-value=3.5e-28  Score=218.70  Aligned_cols=242  Identities=21%  Similarity=0.346  Sum_probs=173.3

Q ss_pred             EEee-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEE--------eecCC--CcceEEEE-EcCCCe--
Q psy15421         91 HAIP-LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSR--------ELPGH--TGYLSCCR-FLDDNQ--  156 (340)
Q Consensus        91 ~~~~-~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--------~~~~~--~~~v~~~~-~~~~~~--  156 (340)
                      +.+. .|.+.|.++.|++||+|||+||.|+.|+||.+...+. .....        ...+.  ..++.... -.....  
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCccccccccccccccc
Confidence            3445 8899999999999999999999999999999865221 00000        00000  00000000 000000  


Q ss_pred             EEEEeCCCeEEEEECC----CCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEE
Q psy15421        157 IVTSSGDMSCALWDIE----TGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAV  232 (340)
Q Consensus       157 l~~~~~d~~v~iwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v  232 (340)
                      .-.+..... .+.+..    ..+++..+.+|.+.|..+.|+.+ ++|++++.|.+||||++...+|++.|. |..-|+||
T Consensus       339 ~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV  415 (712)
T KOG0283|consen  339 SRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV  415 (712)
T ss_pred             cccccCCcc-ccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence            011111112 122211    23567778999999999999986 488899999999999999999999997 99999999


Q ss_pred             EEec-CCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeec--
Q psy15421        233 TFFP-NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA--  309 (340)
Q Consensus       233 ~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~--  309 (340)
                      +|+| |.+||+||+-|+.|+||++...+.+.-....   .-|++++|.|||++.++|+-+|.+++|+....+......  
T Consensus       416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~---~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~  492 (712)
T KOG0283|consen  416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR---DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR  492 (712)
T ss_pred             EecccCCCcEeecccccceEEeecCcCeeEeehhhh---hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence            9999 6889999999999999999876655433323   249999999999999999999999999977655433221  


Q ss_pred             -------cCCcceEEEEECCCC-CEEEEeeCCCcEEecC
Q psy15421        310 -------GHDNRVSCLGVTEDG-MAVATGSWDSFLRIWN  340 (340)
Q Consensus       310 -------~h~~~i~~~~~s~d~-~~l~s~s~D~~i~iW~  340 (340)
                             .|. .|+.+.|.|-. ..|+..|.|..|||+|
T Consensus       493 ~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d  530 (712)
T KOG0283|consen  493 LHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYD  530 (712)
T ss_pred             eccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEe
Confidence                   233 79999998743 3566678899999986

>KOG2106|consensus

Probab=99.96  E-value=3.1e-26  Score=195.08  Aligned_cols=289  Identities=18%  Similarity=0.260  Sum_probs=224.5

Q ss_pred             ceeeEEeEEecCccCcEEEEEEcCC--CCeEEEE--eCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeC
Q psy15421         42 RIQMRTRRTLRGHLAKIYAMHWGSD--SRNLVSA--SQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGL  117 (340)
Q Consensus        42 ~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~  117 (340)
                      .+.....+.|-.-...|.+++|++-  |.+++..  +.+..+.+||...+.....++.-++.|....|+|.+.-+.....
T Consensus       141 sv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G  220 (626)
T KOG2106|consen  141 SVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG  220 (626)
T ss_pred             cccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC
Confidence            3344444555556678999999973  4555544  56788999999888877777777788999999997665555555


Q ss_pred             CCeEEEEEccCCCCceEEEEeecCC-CcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCC
Q psy15421        118 DNICSIYSLKTREGNVRVSRELPGH-TGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDM  196 (340)
Q Consensus       118 d~~v~i~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  196 (340)
                      -+.+..|+.+.+. ..+.+..+..+ ...|.++.|.+++..++|.++|.|.||+..+.+..+....|.+.|.++++-.+|
T Consensus       221 k~H~~Fw~~~~~~-l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G  299 (626)
T KOG2106|consen  221 KGHLYFWTLRGGS-LVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG  299 (626)
T ss_pred             CceEEEEEccCCc-eEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc
Confidence            6778999876543 22223333332 367999999999999999999999999999888877777999999999999998


Q ss_pred             CEEEEEeCCCcEEEEECCCCe----------------------------------------eeeEecCCCCCeEEEEEec
Q psy15421        197 RTFVSGACDASAKLWDIRDGS----------------------------------------CKQTFPGHESDINAVTFFP  236 (340)
Q Consensus       197 ~~~~sg~~dg~i~~wd~~~~~----------------------------------------~~~~~~~h~~~v~~v~~~~  236 (340)
                      .++ +|+.|+.|..||-.-.+                                        .....++|......++.+|
T Consensus       300 tll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp  378 (626)
T KOG2106|consen  300 TLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP  378 (626)
T ss_pred             cEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC
Confidence            765 59999999999821000                                        0012246777888999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceE
Q psy15421        237 NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVS  316 (340)
Q Consensus       237 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~  316 (340)
                      +...|++++.|+.+++|+  ..++......   ..+..|+.|+|.| .++.|+..|...+.|.++...+..... .++++
T Consensus       379 s~~q~~T~gqdk~v~lW~--~~k~~wt~~~---~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls  451 (626)
T KOG2106|consen  379 SKNQLLTCGQDKHVRLWN--DHKLEWTKII---EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLS  451 (626)
T ss_pred             ChhheeeccCcceEEEcc--CCceeEEEEe---cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceE
Confidence            999999999999999999  4445444322   2357899999999 999999999999999988655554444 88999


Q ss_pred             EEEECCCCCEEEEeeCCCcEEec
Q psy15421        317 CLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       317 ~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      +++|+|+|.+||.||.|+.|+|+
T Consensus       452 ~v~ysp~G~~lAvgs~d~~iyiy  474 (626)
T KOG2106|consen  452 VVRYSPDGAFLAVGSHDNHIYIY  474 (626)
T ss_pred             EEEEcCCCCEEEEecCCCeEEEE
Confidence            99999999999999999999986

>KOG0647|consensus

Probab=99.96  E-value=3.6e-27  Score=189.00  Aligned_cols=240  Identities=16%  Similarity=0.263  Sum_probs=189.2

Q ss_pred             CCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECC
Q psy15421         95 LRSSWVMTCAYAP-SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIE  172 (340)
Q Consensus        95 ~~~~~i~~v~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~  172 (340)
                      ...+.|.+++||| ...+++++++|++||+|++... +.. ..+....|.++|.+++|++++ ++++++.|+++++||+.
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-g~~-~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-GQL-VPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecC-Ccc-cchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence            3456799999999 5667779999999999999763 222 224556789999999998765 68889999999999999


Q ss_pred             CCceEEEEecCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy15421        173 TGQQCASFIGHTGDVMSLSLAPDMR--TFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATC  250 (340)
Q Consensus       173 ~~~~~~~~~~~~~~v~~~~~~~~~~--~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i  250 (340)
                      +++ ...+..|.++|.++.|-+...  .|+|||.|.+||+||+|...++.+++ ..+++.++..-  ..+++.+..++.|
T Consensus       103 S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i  178 (347)
T KOG0647|consen  103 SGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHI  178 (347)
T ss_pred             CCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcE
Confidence            985 566778999999999988665  89999999999999999988887776 34566666543  4488889999999


Q ss_pred             EEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCce--eeeeeccCC---------cceEEEE
Q psy15421        251 RLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTE--RAGILAGHD---------NRVSCLG  319 (340)
Q Consensus       251 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~--~~~~~~~h~---------~~i~~~~  319 (340)
                      .+|++++...............+.|++..++....+.|+-.|.+.|..+..+.  .-..++=|.         -.|++++
T Consensus       179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~  258 (347)
T KOG0647|consen  179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA  258 (347)
T ss_pred             EEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence            99999765433221112234458899999998888999999999999876652  222333343         2578899


Q ss_pred             ECCCCCEEEEeeCCCcEEecC
Q psy15421        320 VTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       320 ~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |+|....|++++.||+...||
T Consensus       259 FhP~hgtlvTaGsDGtf~FWD  279 (347)
T KOG0647|consen  259 FHPVHGTLVTAGSDGTFSFWD  279 (347)
T ss_pred             eecccceEEEecCCceEEEec
Confidence            999999999999999999997

>KOG0646|consensus

Probab=99.96  E-value=3.3e-27  Score=199.23  Aligned_cols=261  Identities=18%  Similarity=0.277  Sum_probs=204.1

Q ss_pred             EeCC-CeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC-CeEEEEEccCCCCceEEEEeecCCCcceEEEE
Q psy15421         73 ASQD-GKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD-NICSIYSLKTREGNVRVSRELPGHTGYLSCCR  150 (340)
Q Consensus        73 ~~~d-~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~  150 (340)
                      ++.| ..+.+||+.++.....+++.......-.-.-.+.|++++... ..+.+|.+.......    ...--++.+.++.
T Consensus        13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~----q~~v~Pg~v~al~   88 (476)
T KOG0646|consen   13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVV----QYIVLPGPVHALA   88 (476)
T ss_pred             cCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhh----hhcccccceeeee
Confidence            3444 449999999999888777542111111111134677766544 457889886543222    1112356788887


Q ss_pred             EcCCCeEEEEe-CCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCeeee
Q psy15421        151 FLDDNQIVTSS-GDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIR---------DGSCKQ  220 (340)
Q Consensus       151 ~~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~---------~~~~~~  220 (340)
                      .++.+.++.++ ..+.+.+|.+.+|..+..+.+|-..|+|+.|+.|+.+|+||+.||.|.+|++.         +-++..
T Consensus        89 s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~  168 (476)
T KOG0646|consen   89 SSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH  168 (476)
T ss_pred             cCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence            77777766555 89999999999999999999999999999999999999999999999999762         234667


Q ss_pred             EecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEe
Q psy15421        221 TFPGHESDINAVTFFPN--GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD  298 (340)
Q Consensus       221 ~~~~h~~~v~~v~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~  298 (340)
                      .|..|.-+|+++...+.  ..+++|+|.|.++++||+..+..+..+..+   .++.+++.+|.++.+.+|+.+|.|.+.+
T Consensus       169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp---~si~av~lDpae~~~yiGt~~G~I~~~~  245 (476)
T KOG0646|consen  169 IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP---SSIKAVALDPAERVVYIGTEEGKIFQNL  245 (476)
T ss_pred             eeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC---CcceeEEEcccccEEEecCCcceEEeee
Confidence            88899999999988765  458999999999999999988877665443   3589999999999999999999999887


Q ss_pred             CCCce----------------eeeeeccCCc--ceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        299 SMKTE----------------RAGILAGHDN--RVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       299 ~~~~~----------------~~~~~~~h~~--~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ..+..                .+..+.||.+  +|+|++++-||..|+||+.||.|.|||
T Consensus       246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd  305 (476)
T KOG0646|consen  246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD  305 (476)
T ss_pred             hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence            54332                2345778988  999999999999999999999999997

>KOG1063|consensus

Probab=99.96  E-value=5.4e-27  Score=206.48  Aligned_cols=295  Identities=20%  Similarity=0.277  Sum_probs=222.7

Q ss_pred             eeEEeEEecCccCcEEEEEEcCCCC---eEEEEeCCCeEEEEeCCCCC---------------------eeEE-------
Q psy15421         44 QMRTRRTLRGHLAKIYAMHWGSDSR---NLVSASQDGKLIVWDSYTTN---------------------KVHA-------   92 (340)
Q Consensus        44 ~~~~~~~~~~h~~~v~~~~~s~~~~---~l~s~~~d~~i~iwd~~~~~---------------------~~~~-------   92 (340)
                      +++....+.||.+-|.+++|...+.   +|+|+|+|..||||.+.-..                     ....       
T Consensus       180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~  259 (764)
T KOG1063|consen  180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF  259 (764)
T ss_pred             ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence            4455678999999999999987544   79999999999999763211                     1111       


Q ss_pred             ---eeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEee---cCCCcceEEEEEcCC-CeEEEEeCCCe
Q psy15421         93 ---IPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSREL---PGHTGYLSCCRFLDD-NQIVTSSGDMS  165 (340)
Q Consensus        93 ---~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~l~~~~~d~~  165 (340)
                         +.+|.++|+++.|+|.+..|++++.|+++.+|......+.......+   .+.......+.|+++ +.+++-+..|.
T Consensus       260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg  339 (764)
T KOG1063|consen  260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG  339 (764)
T ss_pred             hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence               23899999999999999999999999999999987655544333222   233334555666655 46777788999


Q ss_pred             EEEEECCCC---ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-------------------------C--
Q psy15421        166 CALWDIETG---QQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIR-------------------------D--  215 (340)
Q Consensus       166 v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~-------------------------~--  215 (340)
                      .++|--+..   .+...+.+|.+.|..++|+|.|.++++.+.|.+-|+|-.-                         +  
T Consensus       340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~  419 (764)
T KOG1063|consen  340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED  419 (764)
T ss_pred             EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence            999983221   2334567899999999999999999999999998886210                         0  


Q ss_pred             -----C---eee--------------------------------------------------------------------
Q psy15421        216 -----G---SCK--------------------------------------------------------------------  219 (340)
Q Consensus       216 -----~---~~~--------------------------------------------------------------------  219 (340)
                           +   +..                                                                    
T Consensus       420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~  499 (764)
T KOG1063|consen  420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE  499 (764)
T ss_pred             ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence                 0   000                                                                    


Q ss_pred             -------------------eEecCCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEeCcCCcEEEEeecCCcccceEE
Q psy15421        220 -------------------QTFPGHESDINAVTFFPNGWAFATGSDDA-----TCRLFDIRADQELAMYSHDNIICGITS  275 (340)
Q Consensus       220 -------------------~~~~~h~~~v~~v~~~~~~~~l~s~s~d~-----~i~iwd~~~~~~~~~~~~~~~~~~i~~  275 (340)
                                         +.+.||...|.+++.+|+++.+||++...     .|++|+..+......+.  .+.-.|+.
T Consensus       500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~--~HsLTVT~  577 (764)
T KOG1063|consen  500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE--GHSLTVTR  577 (764)
T ss_pred             ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec--ccceEEEE
Confidence                               00114777899999999999999987754     48999988765554332  23335999


Q ss_pred             EEEcCCCcEEEEEeCCCcEEEEeCCCcee----eeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        276 VAFSRSGRLLLAGYDDFNCNVWDSMKTER----AGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       276 ~~~s~~~~~l~~g~~d~~i~iw~~~~~~~----~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++|||||++|++.+.|+++.+|+......    +.....|..-|+...|+||+.+++++|.|.+|+||.
T Consensus       578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE  646 (764)
T ss_pred             EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence            99999999999999999999998643322    334678999999999999999999999999999993

>KOG2106|consensus

Probab=99.96  E-value=7.8e-26  Score=192.69  Aligned_cols=277  Identities=18%  Similarity=0.315  Sum_probs=216.7

Q ss_pred             cCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEe---eCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         52 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAI---PLR-SSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        52 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~-~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      +.-++.|....|+|.++.++....-+.+..|+...+......   ..+ ...|.++.|.++|.. ++|..+|.+.||+..
T Consensus       197 k~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~  275 (626)
T KOG2106|consen  197 KTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSKG  275 (626)
T ss_pred             eeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE-EeecCCceEEEEeCC
Confidence            344678899999997766555555678999998877554332   222 267999999999876 689999999999974


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCce-------------------------------
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQ-------------------------------  176 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-------------------------------  176 (340)
                      +    .++.+...+|.+.|.+++...++.|++|+.|+.|..||-.-.+.                               
T Consensus       276 ~----~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i  351 (626)
T KOG2106|consen  276 T----NRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI  351 (626)
T ss_pred             C----ceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence            3    24555566999999999999999999999999999998321100                               


Q ss_pred             ---------EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCC
Q psy15421        177 ---------CASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDD  247 (340)
Q Consensus       177 ---------~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d  247 (340)
                               ....++|......++.+|+..+++|++.|+++++|+  ..++.-+.+ -..+..|++|+|.| .+|.|...
T Consensus       352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~  427 (626)
T KOG2106|consen  352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTAT  427 (626)
T ss_pred             EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeecc
Confidence                     001246888899999999999999999999999998  444443333 45678999999999 99999999


Q ss_pred             CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCC-ceeeeeecc-CCcceEEEEECCCCC
Q psy15421        248 ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK-TERAGILAG-HDNRVSCLGVTEDGM  325 (340)
Q Consensus       248 ~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~-~~~~~~~~~-h~~~i~~~~~s~d~~  325 (340)
                      |...+.|.++...+... ..  ..++++++|+|+|.+||.|+.|+.|++|-... +........ |..+|+.+.||+|++
T Consensus       428 G~w~V~d~e~~~lv~~~-~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~  504 (626)
T KOG2106|consen  428 GRWFVLDTETQDLVTIH-TD--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQ  504 (626)
T ss_pred             ceEEEEecccceeEEEE-ec--CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCc
Confidence            99999999885554432 22  45699999999999999999999999998643 333333322 238999999999999


Q ss_pred             EEEEeeCCCcEEecC
Q psy15421        326 AVATGSWDSFLRIWN  340 (340)
Q Consensus       326 ~l~s~s~D~~i~iW~  340 (340)
                      +|.+-|.|-.|..|.
T Consensus       505 ~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  505 FLVSNSGDYEILYWK  519 (626)
T ss_pred             eEEeccCceEEEEEc
Confidence            999999999999983

>KOG0264|consensus

Probab=99.96  E-value=1.5e-27  Score=200.70  Aligned_cols=248  Identities=15%  Similarity=0.274  Sum_probs=199.7

Q ss_pred             CccCcEEEEEEcCCCC-eEEEEeCCCeEEEEeCCCCC----------eeEEeeCCCCcEEEEEECCC-CCEEEEEeCCCe
Q psy15421         53 GHLAKIYAMHWGSDSR-NLVSASQDGKLIVWDSYTTN----------KVHAIPLRSSWVMTCAYAPS-GSFVACGGLDNI  120 (340)
Q Consensus        53 ~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~----------~~~~~~~~~~~i~~v~~~~~-~~~l~~~~~d~~  120 (340)
                      -|.++|+.+.+-|.++ .+++.+..+.|+|||..+-.          ....+.+|...=+.+.|++. .-+|++++.|++
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            5889999999988765 45667888999999975322          12356777765677888875 457899999999


Q ss_pred             EEEEEccCCCCc---eEEEEeecCCCcceEEEEEcC--CCeEEEEeCCCeEEEEECC--CCceEEEEecCCCCeEEEEEc
Q psy15421        121 CSIYSLKTREGN---VRVSRELPGHTGYLSCCRFLD--DNQIVTSSGDMSCALWDIE--TGQQCASFIGHTGDVMSLSLA  193 (340)
Q Consensus       121 v~i~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~  193 (340)
                      +.+||+......   ......+.+|...|..+.|..  ...|.+++.|+.+.|||++  +.+......+|.+++.|++|+
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn  281 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN  281 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence            999999865432   344556789999999998864  4568889999999999999  455566778899999999999


Q ss_pred             CC-CCEEEEEeCCCcEEEEECCCC-eeeeEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCCc-----------
Q psy15421        194 PD-MRTFVSGACDASAKLWDIRDG-SCKQTFPGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQ-----------  259 (340)
Q Consensus       194 ~~-~~~~~sg~~dg~i~~wd~~~~-~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~-----------  259 (340)
                      |- +..|+|||.|++|++||+|+- ++..++.+|...|.+|.|+|. ...|||++.|+.+.+||+..-.           
T Consensus       282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg  361 (422)
T KOG0264|consen  282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG  361 (422)
T ss_pred             CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence            95 557889999999999999974 457889999999999999996 6789999999999999986421           


Q ss_pred             -EEEEeecCCcccceEEEEEcCCCcE-EEEEeCCCcEEEEeCC
Q psy15421        260 -ELAMYSHDNIICGITSVAFSRSGRL-LLAGYDDFNCNVWDSM  300 (340)
Q Consensus       260 -~~~~~~~~~~~~~i~~~~~s~~~~~-l~~g~~d~~i~iw~~~  300 (340)
                       +-..|.|.++...|..+.|+|...+ +++.+.|+.+.||...
T Consensus       362 ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  362 PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence             1224667788888999999999876 5567889999999853

>KOG0299|consensus

Probab=99.96  E-value=1.7e-27  Score=200.63  Aligned_cols=245  Identities=23%  Similarity=0.384  Sum_probs=203.3

Q ss_pred             EEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCc-eEEEE-----------ee--cCCCcceEEEEEcCCC-
Q psy15421         91 HAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGN-VRVSR-----------EL--PGHTGYLSCCRFLDDN-  155 (340)
Q Consensus        91 ~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~-----------~~--~~~~~~v~~~~~~~~~-  155 (340)
                      ..+..|.-.+.+++++|++++.++++.+++|.-|++.++... ..+..           ..  .+|...+.+++.++++ 
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            345577888999999999999999999999999998876532 11111           11  2677778888777665 


Q ss_pred             eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEe
Q psy15421        156 QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFF  235 (340)
Q Consensus       156 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~  235 (340)
                      +|++|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.....+++++.|++|++|+++....+.++-+|...|.+|.-.
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL  295 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL  295 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence            68889999999999999999999999999999999999988899999999999999999888888899999999999888


Q ss_pred             cCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeec-cC---
Q psy15421        236 PNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA-GH---  311 (340)
Q Consensus       236 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~-~h---  311 (340)
                      .-++.+-.|+.|+++++|++.....+...++.   ..+-|++|-.+ ..+++|++||.|.+|++.+.+++.+.. .|   
T Consensus       296 ~reR~vtVGgrDrT~rlwKi~eesqlifrg~~---~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~  371 (479)
T KOG0299|consen  296 SRERCVTVGGRDRTVRLWKIPEESQLIFRGGE---GSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI  371 (479)
T ss_pred             cccceEEeccccceeEEEeccccceeeeeCCC---CCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeecccccc
Confidence            77877777889999999999765555444443   35788888754 567899999999999998877766432 22   


Q ss_pred             --------CcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        312 --------DNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       312 --------~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                              ..+|++|+..|...+++|||.+|+||+|
T Consensus       372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW  407 (479)
T KOG0299|consen  372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLW  407 (479)
T ss_pred             CCccccccccceeeeEecccCceEEecCCCCceEEE
Confidence                    2389999999999999999999999999

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=2.3e-25  Score=192.66  Aligned_cols=264  Identities=16%  Similarity=0.164  Sum_probs=194.2

Q ss_pred             CeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEE-EEEeCCCeEEEEEccCCCCceEEEEeecCCCcce
Q psy15421         68 RNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFV-ACGGLDNICSIYSLKTREGNVRVSRELPGHTGYL  146 (340)
Q Consensus        68 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v  146 (340)
                      ..++|++.|+.|++||..+++.+..+..+.. +..++|+|++.++ ++++.++.+++|+..+++    ....++.+.. .
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~----~~~~~~~~~~-~   75 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGE----VIGTLPSGPD-P   75 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCc----EEEeccCCCC-c
Confidence            5788999999999999999888888776544 5678999999876 567788999999987643    2233333333 3


Q ss_pred             EEEEEcCCC-eEEE-EeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeeeeEec
Q psy15421        147 SCCRFLDDN-QIVT-SSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDA-SAKLWDIRDGSCKQTFP  223 (340)
Q Consensus       147 ~~~~~~~~~-~l~~-~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg-~i~~wd~~~~~~~~~~~  223 (340)
                      ..+.+.+++ .+++ +..++.+.+||+.+.+.+..+.. ...+.+++|+|++..+++++.++ .+.+||.++++......
T Consensus        76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~  154 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL  154 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence            345666654 4544 45689999999998776665542 33467899999999999888775 46778998877655443


Q ss_pred             CCCCCeEEEEEecCCCEEE-EEeCCCcEEEEeCcCCcEEEEeecCC-----cccceEEEEEcCCCcEEEEE-eCCCcEEE
Q psy15421        224 GHESDINAVTFFPNGWAFA-TGSDDATCRLFDIRADQELAMYSHDN-----IICGITSVAFSRSGRLLLAG-YDDFNCNV  296 (340)
Q Consensus       224 ~h~~~v~~v~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~~g-~~d~~i~i  296 (340)
                      . ...+..++|+|++..++ ++..++.|++||+.+.+.+..+....     .......++|+|++++++++ ..++.+.+
T Consensus       155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v  233 (300)
T TIGR03866       155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV  233 (300)
T ss_pred             c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence            2 23457899999998875 44569999999999876655443111     01123468899999986553 45668999


Q ss_pred             EeCCCceeeeeeccCCcceEEEEECCCCCEEEEe-eCCCcEEecC
Q psy15421        297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATG-SWDSFLRIWN  340 (340)
Q Consensus       297 w~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~-s~D~~i~iW~  340 (340)
                      ||..+++....+ .+...+.+++|+|+|.+|+++ +.++.|++||
T Consensus       234 ~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d  277 (300)
T TIGR03866       234 VDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID  277 (300)
T ss_pred             EECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence            999888776554 345679999999999999876 5689999997

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055|consensus

Probab=99.96  E-value=9e-27  Score=196.34  Aligned_cols=299  Identities=18%  Similarity=0.284  Sum_probs=227.4

Q ss_pred             cccceeeEEeEEec-Cc--cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCC--CCCeeEEeeCCCCcEEEEEECCCCC-EE
Q psy15421         39 PIGRIQMRTRRTLR-GH--LAKIYAMHWGSDSRNLVSASQDGKLIVWDSY--TTNKVHAIPLRSSWVMTCAYAPSGS-FV  112 (340)
Q Consensus        39 ~~~~~~~~~~~~~~-~h--~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~i~~v~~~~~~~-~l  112 (340)
                      |.+++.++..+-+. +|  .+.|+++.|+|..+.+++++.|++++||-+.  ....++.+.....+|.+..|.|+|. .+
T Consensus       194 p~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i  273 (514)
T KOG2055|consen  194 PPGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVI  273 (514)
T ss_pred             CCceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEE
Confidence            44555555444433 33  3689999999999999999999999999664  4446677777788999999999999 89


Q ss_pred             EEEeCCCeEEEEEccCCCCceEEEEeecCCCc-ceEEEEE-cCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEE
Q psy15421        113 ACGGLDNICSIYSLKTREGNVRVSRELPGHTG-YLSCCRF-LDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSL  190 (340)
Q Consensus       113 ~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~  190 (340)
                      ++++.......||+.+.+.  .....+.++.. .+..... +.++.++..+..|.|.+....+++.+..+. ..+.+..+
T Consensus       274 ~~s~rrky~ysyDle~ak~--~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~  350 (514)
T KOG2055|consen  274 FTSGRRKYLYSYDLETAKV--TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF  350 (514)
T ss_pred             EecccceEEEEeecccccc--ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence            9999999999999976432  12222333331 2222222 345678889999999999999988777664 56779999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCC-CeEEEEEecCCCEEEEEeCCCcEEEEeCcCC----cEEEEee
Q psy15421        191 SLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHES-DINAVTFFPNGWAFATGSDDATCRLFDIRAD----QELAMYS  265 (340)
Q Consensus       191 ~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~-~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~  265 (340)
                      +|+.+++.+++++.+|.|.+||++...+++.+....+ --++++.++++.+||+||..|.|.|||..+.    .+.....
T Consensus       351 ~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~  430 (514)
T KOG2055|consen  351 TFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKT  430 (514)
T ss_pred             EEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhh
Confidence            9999999999999999999999999988888863322 2356777899999999999999999996531    2222223


Q ss_pred             cCCcccceEEEEEcCCCcEEEEEeC--CCcEEEEeCCCceeeeeec---cCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        266 HDNIICGITSVAFSRSGRLLLAGYD--DFNCNVWDSMKTERAGILA---GHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       266 ~~~~~~~i~~~~~s~~~~~l~~g~~--d~~i~iw~~~~~~~~~~~~---~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ..+....|+++.|+||+++||.++.  +..+++-.+.+......+.   .-.+.|+|++|||.|.+||.|-.+|.+.+|.
T Consensus       431 ~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k  510 (514)
T KOG2055|consen  431 VDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK  510 (514)
T ss_pred             hhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence            3455667999999999999998874  5567776665544444333   2346799999999999999999999999994

>KOG0268|consensus

Probab=99.96  E-value=4.3e-28  Score=198.65  Aligned_cols=260  Identities=20%  Similarity=0.301  Sum_probs=198.8

Q ss_pred             CCCccccceeeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEE
Q psy15421         35 GNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVAC  114 (340)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~  114 (340)
                      +.+..|+.-+-...++|+.|.+.|..++++.  ..++++|.|.+|+.|-... ..++++-+ .+.++.+.-+..+..++|
T Consensus        89 G~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaT  164 (433)
T KOG0268|consen   89 GEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFAT  164 (433)
T ss_pred             ceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccc
Confidence            3333444444456789999999999999987  6789999999999997654 34444433 233555555556777888


Q ss_pred             EeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEE
Q psy15421        115 GGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSL  192 (340)
Q Consensus       115 ~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~  192 (340)
                      +|.+  |.|||.....    +...+.--...+.++.|++-  ..|+++..|++|.+||++.++++..+. ....-+.++|
T Consensus       165 cGe~--i~IWD~~R~~----Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~Isw  237 (433)
T KOG0268|consen  165 CGEQ--IDIWDEQRDN----PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICW  237 (433)
T ss_pred             cCce--eeecccccCC----ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceec
Confidence            8765  8899975432    22223333456778888764  457778899999999999998876653 3345678999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCC-eeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCccc
Q psy15421        193 APDMRTFVSGACDASAKLWDIRDG-SCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIIC  271 (340)
Q Consensus       193 ~~~~~~~~sg~~dg~i~~wd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~  271 (340)
                      +|+.-.|++|+.|..+..+|++.- .++..+++|.+.|.+|+|+|.|+.|++||.|++|+||..+.+.....+ |..-..
T Consensus       238 nPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY-htkRMq  316 (433)
T KOG0268|consen  238 NPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY-HTKRMQ  316 (433)
T ss_pred             CccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh-hHhhhh
Confidence            998888999999999999999864 456778899999999999999999999999999999999866544333 333345


Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeee
Q psy15421        272 GITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAG  306 (340)
Q Consensus       272 ~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~  306 (340)
                      .|.++.||-|.+++++|++|++|++|...-.+.++
T Consensus       317 ~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  317 HVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             eeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence            69999999999999999999999999865544444

>KOG0294|consensus

Probab=99.96  E-value=5e-26  Score=183.45  Aligned_cols=263  Identities=17%  Similarity=0.263  Sum_probs=204.8

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCC--EEEEEeCCCeEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGS--FVACGGLDNICSI  123 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~--~l~~~~~d~~v~i  123 (340)
                      .....+..|..+|++++.  ++++++|||.|-+|+|||......+..+-.|.+.|+++.|.++..  .|++|+.||.|.+
T Consensus        34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i  111 (362)
T KOG0294|consen   34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII  111 (362)
T ss_pred             eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence            344567899999999997  578999999999999999999988889999999999999998765  8999999999999


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEcCCCeEE-EEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEE
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIV-TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSG  202 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg  202 (340)
                      |+..    .+.....+.+|...|+.+..+|.++|+ +.++|+.+++||+-.|+...... .......+.|+|.|.+|+.+
T Consensus       112 w~~~----~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~  186 (362)
T KOG0294|consen  112 WRVG----SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVS  186 (362)
T ss_pred             EEcC----CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCCEEEEE
Confidence            9964    456778889999999999999888765 67889999999998887544432 22334459999999988876


Q ss_pred             eCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEE--cC
Q psy15421        203 ACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAF--SR  280 (340)
Q Consensus       203 ~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~--s~  280 (340)
                      +.+ .|-+|.+.+-.....+. ...++.|+.|. ++.++++|+.|+.|++||.....++..+.  .+..+|..+.+  .|
T Consensus       187 ~~~-~i~i~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~--AH~~RVK~i~~~~~~  261 (362)
T KOG0294|consen  187 GRN-KIDIYQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL--AHENRVKDIASYTNP  261 (362)
T ss_pred             ecc-EEEEEecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeee--cchhheeeeEEEecC
Confidence            654 68899887765544443 22456677665 46699999999999999999877666553  23345667764  67


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCc-----eeeeeeccCCcceEEEEEC
Q psy15421        281 SGRLLLAGYDDFNCNVWDSMKT-----ERAGILAGHDNRVSCLGVT  321 (340)
Q Consensus       281 ~~~~l~~g~~d~~i~iw~~~~~-----~~~~~~~~h~~~i~~~~~s  321 (340)
                      ++.+|++++.||.|++||....     +.+..+.- ...++|+...
T Consensus       262 ~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~~  306 (362)
T KOG0294|consen  262 EHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRVK  306 (362)
T ss_pred             CceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeeeh
Confidence            8999999999999999997644     23333332 4566776543

>KOG1332|consensus

Probab=99.96  E-value=2.4e-27  Score=184.69  Aligned_cols=245  Identities=17%  Similarity=0.262  Sum_probs=194.7

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC---CCeEEEEeCCCeEEEEEC
Q psy15421         95 LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD---DNQIVTSSGDMSCALWDI  171 (340)
Q Consensus        95 ~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~l~~~~~d~~v~iwd~  171 (340)
                      .|.+.|..+...-.|+.||+++.|++|+|+..+...+ .....++.+|.++|..+.|..   ++.|++++.||.|.||.-
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            5677777777777899999999999999999986543 456788999999999998854   356888999999999998


Q ss_pred             CCCc--eEEEEecCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCC---eeeeEecCCCCCeEEEEEecC---C---
Q psy15421        172 ETGQ--QCASFIGHTGDVMSLSLAPDM--RTFVSGACDASAKLWDIRDG---SCKQTFPGHESDINAVTFFPN---G---  238 (340)
Q Consensus       172 ~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~~sg~~dg~i~~wd~~~~---~~~~~~~~h~~~v~~v~~~~~---~---  238 (340)
                      .+++  .......|...|++++|.|.+  -.|++++.||.|.+.+.++.   ...+....|.-.|++++|.|.   |   
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            8774  345567899999999999975  46789999999999988764   223456789999999999986   4   


Q ss_pred             --------CEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCC----cEEEEEeCCCcEEEEeCCCc-e--
Q psy15421        239 --------WAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSG----RLLLAGYDDFNCNVWDSMKT-E--  303 (340)
Q Consensus       239 --------~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~----~~l~~g~~d~~i~iw~~~~~-~--  303 (340)
                              +.|+||+.|..|+||+..+.+=........+..-|..++|.|.-    .+||+++.||++-||..... +  
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w  247 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW  247 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence                    56999999999999998875211111123344458899999974    58999999999999985421 1  


Q ss_pred             eeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        304 RAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       304 ~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ....+......++.++||+.|+.|+.++.|..|.+|.
T Consensus       248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             cccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            1233444567899999999999999999999999993

>KOG0267|consensus

Probab=99.95  E-value=1.7e-28  Score=216.90  Aligned_cols=253  Identities=23%  Similarity=0.388  Sum_probs=217.5

Q ss_pred             eEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEE
Q psy15421         69 NLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSC  148 (340)
Q Consensus        69 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~  148 (340)
                      .+++...+-.+++||...      +-.|...+.+......++.+++|+.|..+-+|.+....    ....+.+|...|.+
T Consensus         6 ~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~----~i~S~~~hespIeS   75 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN----AITSLTGHESPIES   75 (825)
T ss_pred             ccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCc----hhheeeccCCccee
Confidence            445555566778887542      33566667777766778999999999999899875432    33457899999999


Q ss_pred             EEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCC
Q psy15421        149 CRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHES  227 (340)
Q Consensus       149 ~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~  227 (340)
                      +.|.... .+++|+.+|+|++||++.++.++.+.+|...+.++.|+|-+.++++|+.|..+++||++..-|...+.+|..
T Consensus        76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~  155 (825)
T KOG0267|consen   76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR  155 (825)
T ss_pred             eecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence            9997665 567788899999999999999999999999999999999999999999999999999998888999999999


Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeee
Q psy15421        228 DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGI  307 (340)
Q Consensus       228 ~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~  307 (340)
                      .+..+.|+|+|+++++|+.|.+++|||...++....|.  .+.+.+.++.|+|..-+++.|+.|+++++||+++.+.+..
T Consensus       156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~--~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s  233 (825)
T KOG0267|consen  156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK--SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS  233 (825)
T ss_pred             eeEEEeecCCCceeeccCCcceeeeecccccccccccc--cccccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence            99999999999999999999999999999888877764  2334688899999999999999999999999999999988


Q ss_pred             eccCCcceEEEEECCCCCEEEEeeCC
Q psy15421        308 LAGHDNRVSCLGVTEDGMAVATGSWD  333 (340)
Q Consensus       308 ~~~h~~~i~~~~~s~d~~~l~s~s~D  333 (340)
                      .......|.+++|.|+++.+++|-.+
T Consensus       234 ~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  234 GKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             cCCccCCceeeeecCCceeeecCchh
Confidence            88888999999999999988887654

>KOG1036|consensus

Probab=99.95  E-value=6.6e-26  Score=182.30  Aligned_cols=236  Identities=19%  Similarity=0.272  Sum_probs=190.1

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCc
Q psy15421         96 RSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQ  175 (340)
Q Consensus        96 ~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~  175 (340)
                      ....|..+.|+|.+..|+.+++|+.+++|++...+...     ...|..++..|+|.+...+++|+-||.|+.+|+.+++
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~-----~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL-----KFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh-----heecCCceeeeeccCCceEEEeccCceEEEEEecCCc
Confidence            35679999999999999999999999999987653222     2347888999999998999999999999999999876


Q ss_pred             eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q psy15421        176 QCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDI  255 (340)
Q Consensus       176 ~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  255 (340)
                      . ..+..|...+.|+...+....+++||.|++|++||.+...+...+.. ...|.++...  |..|+.|..|..+.+||+
T Consensus        87 ~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDL  162 (323)
T KOG1036|consen   87 E-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDL  162 (323)
T ss_pred             c-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEc
Confidence            4 44567999999999999888999999999999999997655555543 3478887765  669999999999999999


Q ss_pred             cCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc----eeeeeeccCC---------cceEEEEECC
Q psy15421        256 RADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT----ERAGILAGHD---------NRVSCLGVTE  322 (340)
Q Consensus       256 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~----~~~~~~~~h~---------~~i~~~~~s~  322 (340)
                      ++.....+.........+.++++-|++.=+++++-||.|.+=.....    +....+.-|.         -+|++++|+|
T Consensus       163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp  242 (323)
T KOG1036|consen  163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP  242 (323)
T ss_pred             ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence            97655444333444556899999999999999999999876433322    2222334442         3799999999


Q ss_pred             CCCEEEEeeCCCcEEecC
Q psy15421        323 DGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       323 d~~~l~s~s~D~~i~iW~  340 (340)
                      -...|+||+.||.|.+||
T Consensus       243 ~~~tfaTgGsDG~V~~Wd  260 (323)
T KOG1036|consen  243 IHGTFATGGSDGIVNIWD  260 (323)
T ss_pred             ccceEEecCCCceEEEcc
Confidence            999999999999999997

>KOG2445|consensus

Probab=99.95  E-value=1.6e-25  Score=179.98  Aligned_cols=246  Identities=14%  Similarity=0.254  Sum_probs=193.1

Q ss_pred             eCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC---CeEEEEeCCCeEEEEE
Q psy15421         94 PLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD---NQIVTSSGDMSCALWD  170 (340)
Q Consensus        94 ~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~l~~~~~d~~v~iwd  170 (340)
                      .+|.+-|.++.|.+.|+.+|+++.|++++|||.....+..........|.+.+..+.|...   ..+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            3577889999999999999999999999999988778888888888899999998888543   3578899999999998


Q ss_pred             CCC---------CceEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe------eeeEec-------CCC
Q psy15421        171 IET---------GQQCASFIGHTGDVMSLSLAPD--MRTFVSGACDASAKLWDIRDGS------CKQTFP-------GHE  226 (340)
Q Consensus       171 ~~~---------~~~~~~~~~~~~~v~~~~~~~~--~~~~~sg~~dg~i~~wd~~~~~------~~~~~~-------~h~  226 (340)
                      -..         ......+....+.|..+.|.|.  |-.+++++.||.+|||+.-+.-      +...++       .+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            621         1223456667788999999995  5578899999999999865432      222222       355


Q ss_pred             CCeEEEEEecC---CCEEEEEeCC-----CcEEEEeCcCCc-E-EEEeecCCcccceEEEEEcCC----CcEEEEEeCCC
Q psy15421        227 SDINAVTFFPN---GWAFATGSDD-----ATCRLFDIRADQ-E-LAMYSHDNIICGITSVAFSRS----GRLLLAGYDDF  292 (340)
Q Consensus       227 ~~v~~v~~~~~---~~~l~s~s~d-----~~i~iwd~~~~~-~-~~~~~~~~~~~~i~~~~~s~~----~~~l~~g~~d~  292 (340)
                      .+..||.|+|.   ..+||.|+.+     +.++||...... . +..-....+.++|+.++|.|.    -++||+++.||
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence            67789999974   4578888766     478899866433 1 121123356678999999996    46899999999


Q ss_pred             cEEEEeCCC--------------------ceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        293 NCNVWDSMK--------------------TERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       293 ~i~iw~~~~--------------------~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                       |+||++..                    .+.+..+.+|.+.|+.+.|.--|..|+|.|.||+||+|.
T Consensus       250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK  316 (361)
T ss_pred             -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence             99998752                    234556889999999999999999999999999999994

>KOG0639|consensus

Probab=99.95  E-value=1.5e-26  Score=196.94  Aligned_cols=282  Identities=20%  Similarity=0.335  Sum_probs=223.2

Q ss_pred             EecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC---eeEEee--CCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q psy15421         50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN---KVHAIP--LRSSWVMTCAYAPSGSFVACGGLDNICSIY  124 (340)
Q Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~--~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~  124 (340)
                      ..-.|..-|.++.++...+++.||+. |-|+|||+....   .+..+.  .....|.++...|||+.|++|+.-.++.||
T Consensus       414 ~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW  492 (705)
T KOG0639|consen  414 NTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW  492 (705)
T ss_pred             hhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence            34478899999999999999999887 569999986432   122221  245678999999999999999999999999


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEe
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGA  203 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~  203 (340)
                      |+......++  .++..-.....++..+++ +..+++..||.|.|||+.+-..++.|.+|.+.+.|+.++++|..|-||+
T Consensus       493 DLAapTprik--aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGG  570 (705)
T KOG0639|consen  493 DLAAPTPRIK--AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGG  570 (705)
T ss_pred             eccCCCcchh--hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCC
Confidence            9987653332  233322233344455555 4567889999999999998888999999999999999999999999999


Q ss_pred             CCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCc
Q psy15421        204 CDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR  283 (340)
Q Consensus       204 ~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  283 (340)
                      -|.+||-||+++++...... ..+.|.++.++|++..++.|-.++.+.+-.....+.-..-.|   ..-|.++.|.+.|+
T Consensus       571 lDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlh---eScVLSlKFa~cGk  646 (705)
T KOG0639|consen  571 LDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLH---ESCVLSLKFAYCGK  646 (705)
T ss_pred             Cccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceeeccc---ccEEEEEEecccCc
Confidence            99999999999987554433 346799999999999999999999988877664433222122   23489999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        284 LLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       284 ~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      ++++-+.|..+..|..-.+..+... .-...|.+..+|.|.++|++||.|....|+
T Consensus       647 wfvStGkDnlLnawrtPyGasiFqs-kE~SsVlsCDIS~ddkyIVTGSGdkkATVY  701 (705)
T KOG0639|consen  647 WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISFDDKYIVTGSGDKKATVY  701 (705)
T ss_pred             eeeecCchhhhhhccCccccceeec-cccCcceeeeeccCceEEEecCCCcceEEE
Confidence            9999999999999987766655544 346789999999999999999999776654

>KOG0640|consensus

Probab=99.95  E-value=1.6e-26  Score=186.07  Aligned_cols=221  Identities=20%  Similarity=0.308  Sum_probs=182.5

Q ss_pred             EEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccC------------CC--CceEEEEeecCCCcceEEEEEcCCC-
Q psy15421         91 HAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKT------------RE--GNVRVSRELPGHTGYLSCCRFLDDN-  155 (340)
Q Consensus        91 ~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~------------~~--~~~~~~~~~~~~~~~v~~~~~~~~~-  155 (340)
                      ..+..|..++.+.+|+|||.++++|+.|-.|+|.|+..            ++  ....+.+++--|...|+.+.|++.. 
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            34567888999999999999999999999999999761            11  1113456777899999999998765 


Q ss_pred             eEEEEeCCCeEEEEECCCCceE--EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEe---cCCCCCeE
Q psy15421        156 QIVTSSGDMSCALWDIETGQQC--ASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTF---PGHESDIN  230 (340)
Q Consensus       156 ~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~---~~h~~~v~  230 (340)
                      .|++++.|++|+++|......-  .....-..+|.++.|+|.|.+++.|..-.++++||+++-+|...-   .+|.+.|+
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~  265 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT  265 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence            6788999999999999653221  112223457999999999999999999999999999998876543   46899999


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeecc
Q psy15421        231 AVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAG  310 (340)
Q Consensus       231 ~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~  310 (340)
                      +|.+++.++.+++||.||.|++||--+.+++..+....-...|.+..|+.+++|+++.+.|..+++|++.++.++..+.|
T Consensus       266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG  345 (430)
T KOG0640|consen  266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG  345 (430)
T ss_pred             EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEec
Confidence            99999999999999999999999988877776665433345699999999999999999999999999999999887765


Q ss_pred             C
Q psy15421        311 H  311 (340)
Q Consensus       311 h  311 (340)
                      .
T Consensus       346 A  346 (430)
T KOG0640|consen  346 A  346 (430)
T ss_pred             C
Confidence            4

>KOG0301|consensus

Probab=99.95  E-value=3.6e-26  Score=201.42  Aligned_cols=236  Identities=22%  Similarity=0.345  Sum_probs=202.6

Q ss_pred             EEecCccCcEEE-EEEcC-CCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         49 RTLRGHLAKIYA-MHWGS-DSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        49 ~~~~~h~~~v~~-~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      ..+.+|.+-|.. ++|-+ ++-.+++|+.|+++.+|...+.....++++|+..|-++....++. +++|++|.++++|..
T Consensus        51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~  129 (745)
T KOG0301|consen   51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI  129 (745)
T ss_pred             eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc
Confidence            567888888877 88875 455699999999999999999999999999999999888777887 899999999999986


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDA  206 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg  206 (340)
                      ..      ....+.+|+..|.++.+.+++.+++|+.|.+|++|.-  ++.+.++.+|.+.|..+++-|++ .|++++.||
T Consensus       130 ~~------l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg  200 (745)
T KOG0301|consen  130 GE------LVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDG  200 (745)
T ss_pred             hh------hhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCc
Confidence            43      2344889999999999888889999999999999976  67788999999999999999865 578999999


Q ss_pred             cEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEE
Q psy15421        207 SAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLL  286 (340)
Q Consensus       207 ~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  286 (340)
                      .|++|++ ++.++..+.+|..-|.+++..+++..++|++.|++++||+..  .....+.++.  ..+.++.+-++|.+ +
T Consensus       201 ~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPt--tsiWsa~~L~NgDI-v  274 (745)
T KOG0301|consen  201 SIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPT--TSIWSAKVLLNGDI-V  274 (745)
T ss_pred             eEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCc--cceEEEEEeeCCCE-E
Confidence            9999998 788899999999999999988888899999999999999987  4444444443  25888888877764 6


Q ss_pred             EEeCCCcEEEEeCC
Q psy15421        287 AGYDDFNCNVWDSM  300 (340)
Q Consensus       287 ~g~~d~~i~iw~~~  300 (340)
                      +|+.||.||||...
T Consensus       275 vg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  275 VGGSDGRVRVFTVD  288 (745)
T ss_pred             EeccCceEEEEEec
Confidence            78899999999754

>KOG1273|consensus

Probab=99.95  E-value=1.8e-25  Score=180.38  Aligned_cols=275  Identities=13%  Similarity=0.162  Sum_probs=213.1

Q ss_pred             EEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEE
Q psy15421         58 IYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSR  137 (340)
Q Consensus        58 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~  137 (340)
                      -.|+.|++.|.+||.|..||.|.|||..+...-..+.+|-.+|.+++||++|+.|++++.|..|.+||+..+....++  
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri--  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI--  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE--
Confidence            689999999999999999999999999998887889999999999999999999999999999999999876532221  


Q ss_pred             eecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCceEEEEecC------CCCeEEEEEcCCCCEEEEEeCCCcEE
Q psy15421        138 ELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQCASFIGH------TGDVMSLSLAPDMRTFVSGACDASAK  209 (340)
Q Consensus       138 ~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~sg~~dg~i~  209 (340)
                         ...++|..+.|++.  ++.++.--+.+-.+-++..++  ......      .....+..|.+.|+++++|...|.+.
T Consensus       104 ---rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll  178 (405)
T KOG1273|consen  104 ---RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL  178 (405)
T ss_pred             ---EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence               13456777777653  445555445555555554322  121111      11223446889999999999999999


Q ss_pred             EEECCCCeeeeEecCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEE---EEee--c----CCcccceEEEEEc
Q psy15421        210 LWDIRDGSCKQTFPGHE-SDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL---AMYS--H----DNIICGITSVAFS  279 (340)
Q Consensus       210 ~wd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~---~~~~--~----~~~~~~i~~~~~s  279 (340)
                      ++|..+-+++..++-.. ..|..+.++..|+.|+.-+.|+.||.|++..--..   ....  +    .-....-.+++|+
T Consensus       179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs  258 (405)
T KOG1273|consen  179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS  258 (405)
T ss_pred             EEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec
Confidence            99999999988887655 68999999999999999999999999997621100   0000  0    0011234688999


Q ss_pred             CCCcEEEEEeC-CCcEEEEeCCCceeeeeeccCC-cceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        280 RSGRLLLAGYD-DFNCNVWDSMKTERAGILAGHD-NRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       280 ~~~~~l~~g~~-d~~i~iw~~~~~~~~~~~~~h~-~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .+|.|+++|+. ...++||+...+..++.+.|.. +....+.|+|-...++|- ..|.|++|.
T Consensus       259 ~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~  320 (405)
T KOG1273|consen  259 GDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA  320 (405)
T ss_pred             CCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence            99999998874 4679999999999999999988 567889999999989988 578999994

>KOG1274|consensus

Probab=99.95  E-value=2.4e-25  Score=201.89  Aligned_cols=242  Identities=18%  Similarity=0.248  Sum_probs=200.3

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCC
Q psy15421         95 LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETG  174 (340)
Q Consensus        95 ~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~  174 (340)
                      +|......++|.|+|.++.+++.|+.|++|+........   .++..+...+.++.. ..+.|++++.+++|..|.+.++
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P---~ti~~~g~~v~~ia~-~s~~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP---ETIDISGELVSSIAC-YSNHFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC---chhhccCceeEEEee-cccceEEeeccceEEEeeCCCC
Confidence            455667889999999999999999999999976653222   222335666666554 3458999999999999999888


Q ss_pred             ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q psy15421        175 QQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFD  254 (340)
Q Consensus       175 ~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd  254 (340)
                      +.-..+....-++.+++++-+|++++.||.|-.|++-++........+.+|.++|.+|.|+|.+..||+.+-||.|++||
T Consensus        87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~  166 (933)
T KOG1274|consen   87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD  166 (933)
T ss_pred             CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence            76555555567899999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             CcCCcEEEEeecC----Cc--ccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeecc--CCcceEEEEECCCCCE
Q psy15421        255 IRADQELAMYSHD----NI--ICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAG--HDNRVSCLGVTEDGMA  326 (340)
Q Consensus       255 ~~~~~~~~~~~~~----~~--~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~--h~~~i~~~~~s~d~~~  326 (340)
                      +.++....++...    ..  ...+..++|+|+|..++....|+.|++|+...++....++.  |...++++.|||+|+|
T Consensus       167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y  246 (933)
T KOG1274|consen  167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY  246 (933)
T ss_pred             cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence            9876554433211    11  12367889999988888888999999999999998887764  3455999999999999


Q ss_pred             EEEeeCCCcEEecC
Q psy15421        327 VATGSWDSFLRIWN  340 (340)
Q Consensus       327 l~s~s~D~~i~iW~  340 (340)
                      ||+++.||.|.|||
T Consensus       247 iAAs~~~g~I~vWn  260 (933)
T KOG1274|consen  247 IAASTLDGQILVWN  260 (933)
T ss_pred             EeeeccCCcEEEEe
Confidence            99999999999997

>KOG0650|consensus

Probab=99.95  E-value=1.5e-25  Score=194.54  Aligned_cols=293  Identities=17%  Similarity=0.206  Sum_probs=223.8

Q ss_pred             eeeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCE--EEEEeCCCe
Q psy15421         43 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSF--VACGGLDNI  120 (340)
Q Consensus        43 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~--l~~~~~d~~  120 (340)
                      +..+....++||.+.|.++...|.|.+|++|+.||+|+||-+.++.++.++... +.|.+|+|.|.+..  ||++-.+. 
T Consensus       388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~-  465 (733)
T KOG0650|consen  388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGEC-  465 (733)
T ss_pred             CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCc-
Confidence            345566778999999999999999999999999999999999999999887654 46999999997653  44433333 


Q ss_pred             EEEEEccCCC---------------------------------CceEEEEeecCCCcceEEEEEcCCC-eEEEEeC---C
Q psy15421        121 CSIYSLKTRE---------------------------------GNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSG---D  163 (340)
Q Consensus       121 v~i~~~~~~~---------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~---d  163 (340)
                      +.|-+..-++                                 +...-.+..-.|...|..+.|+..+ +|++...   .
T Consensus       466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~  545 (733)
T KOG0650|consen  466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN  545 (733)
T ss_pred             eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence            3333321110                                 0000011222466677778887554 6666544   4


Q ss_pred             CeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEE
Q psy15421        164 MSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFAT  243 (340)
Q Consensus       164 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s  243 (340)
                      ..|.|+++...+....|....+.+.++.|+|...+|+.+ ....|++||+..+.+++.+......|..++++|.|..++.
T Consensus       546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa-Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~  624 (733)
T KOG0650|consen  546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA-TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL  624 (733)
T ss_pred             ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEE-eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence            679999998877666676677889999999988877765 4678999999988877777666778999999999999999


Q ss_pred             EeCCCcEEEEeCcCC-cEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCC------C---ceeeeeeccCCc
Q psy15421        244 GSDDATCRLFDIRAD-QELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM------K---TERAGILAGHDN  313 (340)
Q Consensus       244 ~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~------~---~~~~~~~~~h~~  313 (340)
                      |+.|+.+..||+.-. ++...+.+  +...+.+|+||+.-.++++|++||++.||.-.      .   .-+++.+.+|..
T Consensus       625 gs~d~k~~WfDldlsskPyk~lr~--H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~  702 (733)
T KOG0650|consen  625 GSYDKKMCWFDLDLSSKPYKTLRL--HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK  702 (733)
T ss_pred             ecCCCeeEEEEcccCcchhHHhhh--hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence            999999999998733 33333322  23458999999999999999999999988532      1   124667889976


Q ss_pred             c----eEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        314 R----VSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       314 ~----i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .    |..+.|+|....|+|++.||+||+|.
T Consensus       703 ~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  703 TNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             ecccceEeecccCCCceEEecCCCceEEeeC
Confidence            6    88899999999999999999999993

>KOG0269|consensus

Probab=99.94  E-value=5.2e-26  Score=202.65  Aligned_cols=278  Identities=17%  Similarity=0.283  Sum_probs=212.1

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC----eeEEeeCCCC---cEEEEEECC-CCCEEEEEeCCCeEEEEEccC
Q psy15421         57 KIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN----KVHAIPLRSS---WVMTCAYAP-SGSFVACGGLDNICSIYSLKT  128 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~---~i~~v~~~~-~~~~l~~~~~d~~v~i~~~~~  128 (340)
                      ...+++.+++-..++.++.. .++|+-+....    .....+..+.   .+..|.|.. +.+++|+++..|.|.+||+..
T Consensus        41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk  119 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK  119 (839)
T ss_pred             ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence            34566667887777766664 67777553322    1122222221   233466663 578999999999999999975


Q ss_pred             CCCceEEEEeecCCCcceEEEEEcC--CCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCC-CCEEEEEeCC
Q psy15421        129 REGNVRVSRELPGHTGYLSCCRFLD--DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPD-MRTFVSGACD  205 (340)
Q Consensus       129 ~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~sg~~d  205 (340)
                      . ...+....+..|+-.+.++.|+.  .+.|++|+.||.|++||++..+....+.+....|..|.|+|. +..|+++...
T Consensus       120 ~-~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds  198 (839)
T KOG0269|consen  120 S-IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS  198 (839)
T ss_pred             c-ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence            2 12223345667999999998864  568999999999999999998888888888889999999995 5678899999


Q ss_pred             CcEEEEECCCCe-eeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcE
Q psy15421        206 ASAKLWDIRDGS-CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRL  284 (340)
Q Consensus       206 g~i~~wd~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
                      |.+.+||+|... +...+.+|.++|.|+.|+|++.+|||||.|+.|+|||+...+.-... ..+...+|.+|.|-|...+
T Consensus       199 G~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~-tInTiapv~rVkWRP~~~~  277 (839)
T KOG0269|consen  199 GYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH-TINTIAPVGRVKWRPARSY  277 (839)
T ss_pred             ceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee-EEeecceeeeeeeccCccc
Confidence            999999998754 56678899999999999999999999999999999999854332211 1233457999999998765


Q ss_pred             -EEEEe--CCCcEEEEeCCC-ceeeeeeccCCcceEEEEE-CCCCCEEEEeeCCCcEE
Q psy15421        285 -LLAGY--DDFNCNVWDSMK-TERAGILAGHDNRVSCLGV-TEDGMAVATGSWDSFLR  337 (340)
Q Consensus       285 -l~~g~--~d~~i~iw~~~~-~~~~~~~~~h~~~i~~~~~-s~d~~~l~s~s~D~~i~  337 (340)
                       |++++  .|..|+|||+.- .-+...+..|..-++.++| +.|...|.++|.||+|.
T Consensus       278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence             44433  588999999753 4566788899999999999 45777899999999874

>KOG0772|consensus

Probab=99.94  E-value=9.2e-26  Score=192.72  Aligned_cols=243  Identities=20%  Similarity=0.274  Sum_probs=182.1

Q ss_pred             eEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEe-ecCCCcceEEEEEcCC-CeEEEEeCCCeEE
Q psy15421         90 VHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRE-LPGHTGYLSCCRFLDD-NQIVTSSGDMSCA  167 (340)
Q Consensus        90 ~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~  167 (340)
                      ...++.|...|.++++.|.|..|++|+.|.+|++||+..-....+..+. .+.....+..+.|+.. ++|+..++..+.+
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence            3456677888999999999999999999999999999754433332222 2344556788888754 6889999999999


Q ss_pred             EEECCCCceEEE------------EecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCee-eeEec-----CCCCC
Q psy15421        168 LWDIETGQQCAS------------FIGHTGDVMSLSLAPDM-RTFVSGACDASAKLWDIRDGSC-KQTFP-----GHESD  228 (340)
Q Consensus       168 iwd~~~~~~~~~------------~~~~~~~v~~~~~~~~~-~~~~sg~~dg~i~~wd~~~~~~-~~~~~-----~h~~~  228 (340)
                      ++|-...+....            ..+|...++|.+|+|.. ..|+|++.||++|+||+.+.+. ...++     +..-+
T Consensus       240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~  319 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP  319 (641)
T ss_pred             EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence            999765433322            35788999999999975 4788999999999999876432 22232     22346


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEE--EEee-cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCce-e
Q psy15421        229 INAVTFFPNGWAFATGSDDATCRLFDIRADQEL--AMYS-HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTE-R  304 (340)
Q Consensus       229 v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~-~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~-~  304 (340)
                      +++.+|+|+|+.||+|..||+|.+|+..+....  ..+. .......|+|+.||++|++|++-+.|.++++||+...+ +
T Consensus       320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp  399 (641)
T KOG0772|consen  320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP  399 (641)
T ss_pred             ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence            788999999999999999999999998643221  1111 11223469999999999999999999999999987654 3


Q ss_pred             eeeeccC--CcceEEEEECCCCCEEEEeeC
Q psy15421        305 AGILAGH--DNRVSCLGVTEDGMAVATGSW  332 (340)
Q Consensus       305 ~~~~~~h--~~~i~~~~~s~d~~~l~s~s~  332 (340)
                      +....+-  .-+-+.++|||+.++|++|..
T Consensus       400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             hhhhcCCCccCCCCccccCCCceEEEeccc
Confidence            3333332  234567899999999998864

>KOG0321|consensus

Probab=99.94  E-value=5.2e-25  Score=192.45  Aligned_cols=280  Identities=21%  Similarity=0.303  Sum_probs=201.8

Q ss_pred             EEEEEcC---CCCeEEEEeCCCeEEEEeCCCCCe------eEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q psy15421         59 YAMHWGS---DSRNLVSASQDGKLIVWDSYTTNK------VHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTR  129 (340)
Q Consensus        59 ~~~~~s~---~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~  129 (340)
                      ++..|++   ....|+.+..||.|.++|.....-      +.....|..+|..+.|-|....|++++.|.++++||+.+.
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence            3455654   234677888999999999754322      3456689999999999998889999999999999999765


Q ss_pred             CCceEEEEeecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCce---------------------------EEEE
Q psy15421        130 EGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQ---------------------------CASF  180 (340)
Q Consensus       130 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~---------------------------~~~~  180 (340)
                      ...  =...+.+|...|..++|.+.  ..|++|+.||.|.|||++....                           +...
T Consensus       133 ~l~--G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~  210 (720)
T KOG0321|consen  133 RLV--GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW  210 (720)
T ss_pred             eee--cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence            321  12246799999999988754  4688999999999999864320                           0111


Q ss_pred             ecCCCCeEE---EEEcCCCCEEEEEeC-CCcEEEEECCCCeeeeE--------ecCC---CCCeEEEEEecCCCEEEEEe
Q psy15421        181 IGHTGDVMS---LSLAPDMRTFVSGAC-DASAKLWDIRDGSCKQT--------FPGH---ESDINAVTFFPNGWAFATGS  245 (340)
Q Consensus       181 ~~~~~~v~~---~~~~~~~~~~~sg~~-dg~i~~wd~~~~~~~~~--------~~~h---~~~v~~v~~~~~~~~l~s~s  245 (340)
                      .++...+.+   +-+..|...+++++. |+.|++||++.......        +..|   ...+.++..+..|.++...+
T Consensus       211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC  290 (720)
T KOG0321|consen  211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC  290 (720)
T ss_pred             ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence            233334444   555567778887776 99999999997654321        2223   23466777777788887777


Q ss_pred             CCCcEEEEeCcCCc--EEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCcee-eeeeccCCcceEEEEECC
Q psy15421        246 DDATCRLFDIRADQ--ELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTER-AGILAGHDNRVSCLGVTE  322 (340)
Q Consensus       246 ~d~~i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~-~~~~~~h~~~i~~~~~s~  322 (340)
                      .|++|++||+....  ++..+.+.....--..-..+|+++++++|+.|...++|.+.+.+. ...+.||...|++|+|.|
T Consensus       291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p  370 (720)
T KOG0321|consen  291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP  370 (720)
T ss_pred             cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence            79999999998543  333332211111012235689999999999999999999877653 567789999999999977


Q ss_pred             CC-CEEEEeeCCCcEEecC
Q psy15421        323 DG-MAVATGSWDSFLRIWN  340 (340)
Q Consensus       323 d~-~~l~s~s~D~~i~iW~  340 (340)
                      .. .-++++|+|.+++||+
T Consensus       371 S~~t~v~TcSdD~~~kiW~  389 (720)
T KOG0321|consen  371 SATTPVATCSDDFRVKIWR  389 (720)
T ss_pred             ccCCCceeeccCcceEEEe
Confidence            43 3588889999999996

>KOG2048|consensus

Probab=99.94  E-value=5.8e-24  Score=187.15  Aligned_cols=239  Identities=19%  Similarity=0.263  Sum_probs=203.3

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCC-cceEEEEEcCCCeEEEEeCCCeEEEEECCCCc
Q psy15421         97 SSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIVTSSGDMSCALWDIETGQ  175 (340)
Q Consensus        97 ~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~  175 (340)
                      ...|.+++|+.+.+.||.+-.++.|.+|++...   +.....+++++ ..+..++|.++++|++.+.+|.|.-||+.+++
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~---w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk  101 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN---WFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLK  101 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCC---ceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCc
Confidence            567999999999999999999999999998753   34455566655 46888999999999999999999999999999


Q ss_pred             eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeee--eEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy15421        176 QCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCK--QTFPGHESDINAVTFFPNGWAFATGSDDATCRLF  253 (340)
Q Consensus       176 ~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~--~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iw  253 (340)
                      +...+....+.+++++.+|.+..++.|+.||.+.+++...+...  ..+....++|.+++|+|++..+++|+.||.|++|
T Consensus       102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw  181 (691)
T KOG2048|consen  102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW  181 (691)
T ss_pred             eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence            99999888899999999999999999999998888887776543  3455556899999999999999999999999999


Q ss_pred             eCcCCcEEEEe-----ecCC-cccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEE
Q psy15421        254 DIRADQELAMY-----SHDN-IICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAV  327 (340)
Q Consensus       254 d~~~~~~~~~~-----~~~~-~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l  327 (340)
                      |...++.+...     .... ...-|.++.|-.+ ..|++|...|+|++||...+.....+.-|...|.|++..+++.++
T Consensus       182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~v  260 (691)
T KOG2048|consen  182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRV  260 (691)
T ss_pred             EcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeE
Confidence            99988776621     1111 2233778888765 478899999999999999998888888999999999999999999


Q ss_pred             EEeeCCCcEEec
Q psy15421        328 ATGSWDSFLRIW  339 (340)
Q Consensus       328 ~s~s~D~~i~iW  339 (340)
                      ++++.|+.|..+
T Consensus       261 fsaGvd~~ii~~  272 (691)
T KOG2048|consen  261 FSAGVDPKIIQY  272 (691)
T ss_pred             EEccCCCceEEE
Confidence            999999998653

>KOG0639|consensus

Probab=99.94  E-value=9.7e-26  Score=192.09  Aligned_cols=240  Identities=19%  Similarity=0.364  Sum_probs=195.6

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeec--CCCcceEEEEEcCCC-eEEEEeCCCeEEEEEC
Q psy15421         95 LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELP--GHTGYLSCCRFLDDN-QIVTSSGDMSCALWDI  171 (340)
Q Consensus        95 ~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~  171 (340)
                      .|..-|..+..+...+++++|+.. -|+|||+...+.+. ....++  ....++..|...+++ .|++|+.-.++.|||+
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGkg-cVKVWdis~pg~k~-PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISQPGNKS-PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCCC-eEEEeeccCCCCCC-ccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            466677888899999999998865 57999997653322 222222  345678888877665 6888999999999999


Q ss_pred             CCCceEEE--EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCc
Q psy15421        172 ETGQQCAS--FIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDAT  249 (340)
Q Consensus       172 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~  249 (340)
                      .....-..  +....-.+.+++.+||.+..+++..||.|.+||+++...++.|++|...+.||.+++||..|-||+-|.+
T Consensus       495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt  574 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT  574 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence            76543221  2222234678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEE
Q psy15421        250 CRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVAT  329 (340)
Q Consensus       250 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s  329 (340)
                      +|-||+++.+.+.+.   .....|.++.++|.+.+|++|..++.+.+-.. ++.....+..|+..|.+|.|++.|++++|
T Consensus       575 vRcWDlregrqlqqh---dF~SQIfSLg~cP~~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~cGkwfvS  650 (705)
T KOG0639|consen  575 VRCWDLREGRQLQQH---DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVS  650 (705)
T ss_pred             eeehhhhhhhhhhhh---hhhhhheecccCCCccceeeecccCcEEEEec-CCccceeecccccEEEEEEecccCceeee
Confidence            999999987765543   23345889999999999999999999999874 44455677889999999999999999999


Q ss_pred             eeCCCcEEecC
Q psy15421        330 GSWDSFLRIWN  340 (340)
Q Consensus       330 ~s~D~~i~iW~  340 (340)
                      .+.|..+..|.
T Consensus       651 tGkDnlLnawr  661 (705)
T KOG0639|consen  651 TGKDNLLNAWR  661 (705)
T ss_pred             cCchhhhhhcc
Confidence            99999988884

>KOG1063|consensus

Probab=99.94  E-value=7.8e-25  Score=193.01  Aligned_cols=294  Identities=18%  Similarity=0.285  Sum_probs=223.4

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC-eeEEe---eCCCCcEEEEEECCCCCEEEEEeCCCeEE
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN-KVHAI---PLRSSWVMTCAYAPSGSFVACGGLDNICS  122 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~---~~~~~~i~~v~~~~~~~~l~~~~~d~~v~  122 (340)
                      .+..+.||.+.|.+++|+|.|.+|+|+|.|.|-|++-....+ .-+.+   +.|.....|++|-+....+++|..++.+|
T Consensus       353 ~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlR  432 (764)
T KOG1063|consen  353 QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLR  432 (764)
T ss_pred             eccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeee
Confidence            345678999999999999999999999999999999654221 12333   46777889999998788889999999999


Q ss_pred             EEEccCC-----------------------------------------CCce----E-----------------------
Q psy15421        123 IYSLKTR-----------------------------------------EGNV----R-----------------------  134 (340)
Q Consensus       123 i~~~~~~-----------------------------------------~~~~----~-----------------------  134 (340)
                      +|+....                                         .+..    .                       
T Consensus       433 vF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~  512 (764)
T KOG1063|consen  433 VFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQN  512 (764)
T ss_pred             eecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHh
Confidence            9975510                                         0000    0                       


Q ss_pred             ----EEEeecCCCcceEEEEEcCCCe-EEEEeCC-----CeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q psy15421        135 ----VSRELPGHTGYLSCCRFLDDNQ-IVTSSGD-----MSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC  204 (340)
Q Consensus       135 ----~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~  204 (340)
                          ...++-+|...|.++..++++. +++++..     ..|++|+..+....+.+.+|.-.|+.++|+||+++|++.|.
T Consensus       513 tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR  592 (764)
T KOG1063|consen  513 TLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR  592 (764)
T ss_pred             ccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec
Confidence                0012337788888988877665 4555432     35899999998888899999999999999999999999999


Q ss_pred             CCcEEEEECCCCee----eeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCC--cEEEEeecCCcccceEEEEE
Q psy15421        205 DASAKLWDIRDGSC----KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD--QELAMYSHDNIICGITSVAF  278 (340)
Q Consensus       205 dg~i~~wd~~~~~~----~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~~~~~~~i~~~~~  278 (340)
                      |+++.+|.......    ....+.|..-|++..|+|++.+|||+|.|++|++|.....  +.+..+.......+|++++|
T Consensus       593 DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~  672 (764)
T KOG1063|consen  593 DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAY  672 (764)
T ss_pred             CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEe
Confidence            99999998754321    2346789999999999999999999999999999988765  33333333344556899999


Q ss_pred             cCC-----CcEEEEEeCCCcEEEEeCCCcee---------e---eeeccCCcceEEEEECCC----------CCEEEEee
Q psy15421        279 SRS-----GRLLLAGYDDFNCNVWDSMKTER---------A---GILAGHDNRVSCLGVTED----------GMAVATGS  331 (340)
Q Consensus       279 s~~-----~~~l~~g~~d~~i~iw~~~~~~~---------~---~~~~~h~~~i~~~~~s~d----------~~~l~s~s  331 (340)
                      .|-     +-.+++|...|.|.+|.....+.         .   ....+|...|+.+.|+|.          ...|++|+
T Consensus       673 ~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g  752 (764)
T KOG1063|consen  673 LPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGG  752 (764)
T ss_pred             eccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeec
Confidence            763     23678899999999998541111         1   123467789999999975          23479999


Q ss_pred             CCCcEEecC
Q psy15421        332 WDSFLRIWN  340 (340)
Q Consensus       332 ~D~~i~iW~  340 (340)
                      .|.++||.|
T Consensus       753 ~D~~vri~n  761 (764)
T KOG1063|consen  753 DDESVRIFN  761 (764)
T ss_pred             ccceeEEee
Confidence            999999875

>KOG0267|consensus

Probab=99.94  E-value=5.9e-27  Score=207.18  Aligned_cols=239  Identities=25%  Similarity=0.425  Sum_probs=212.1

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      .+.+..|...|.++..-..++.+++|+.|..+.+|.......+..+.+|..+|-++.|++...++++|..+|+|++||+.
T Consensus        21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle  100 (825)
T KOG0267|consen   21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE  100 (825)
T ss_pred             chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence            35677899999999886778899999999999999988777778899999999999999999999999999999999997


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDA  206 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg  206 (340)
                      ..    ++.+++.+|...+..+.|++-+ +++.++.|..+++||.+...+...+.+|..-+..+.|+|+|+++++|+.|.
T Consensus       101 eA----k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~  176 (825)
T KOG0267|consen  101 EA----KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN  176 (825)
T ss_pred             hh----hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc
Confidence            54    3556888999988888888765 566788899999999998888889999999999999999999999999999


Q ss_pred             cEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEE
Q psy15421        207 SAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLL  286 (340)
Q Consensus       207 ~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  286 (340)
                      ++++||...|+....|+.|++++..+.|+|..-.+++||.|+++++||+++...+.....  ...+|.+.+|+|+++.++
T Consensus       177 tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~--~~~~v~~~~fn~~~~~~~  254 (825)
T KOG0267|consen  177 TVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP--ETDGVRSLAFNPDGKIVL  254 (825)
T ss_pred             eeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC--ccCCceeeeecCCceeee
Confidence            999999999999999999999999999999999999999999999999987665554332  245799999999999999


Q ss_pred             EEeCCC
Q psy15421        287 AGYDDF  292 (340)
Q Consensus       287 ~g~~d~  292 (340)
                      +|....
T Consensus       255 ~G~q~s  260 (825)
T KOG0267|consen  255 SGEQIS  260 (825)
T ss_pred             cCchhh
Confidence            988764

>KOG2445|consensus

Probab=99.94  E-value=9.5e-24  Score=169.86  Aligned_cols=257  Identities=17%  Similarity=0.279  Sum_probs=194.2

Q ss_pred             cCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC----eeEEeeCCCCcEEEEEECC--CCCEEEEEeCCCeEEEEE
Q psy15421         52 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN----KVHAIPLRSSWVMTCAYAP--SGSFVACGGLDNICSIYS  125 (340)
Q Consensus        52 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~i~~v~~~~--~~~~l~~~~~d~~v~i~~  125 (340)
                      .+|.+-|.++.|.+-|+.++||+.|++++|||.....    +....+.|.+.|..|.|.+  -|..+|+++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            5899999999999999999999999999999964332    3456788999999999975  489999999999999998


Q ss_pred             ccCC--C---CceEEEEeecCCCcceEEEEEcCC---CeEEEEeCCCeEEEEECCCCce------EEEEe-------cCC
Q psy15421        126 LKTR--E---GNVRVSRELPGHTGYLSCCRFLDD---NQIVTSSGDMSCALWDIETGQQ------CASFI-------GHT  184 (340)
Q Consensus       126 ~~~~--~---~~~~~~~~~~~~~~~v~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~~------~~~~~-------~~~  184 (340)
                      -...  +   .......++....+.|..+.|.+.   -.+++++.||.++||+....-.      ...+.       .+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            6321  1   123344456667778888999764   3688899999999998654321      11222       356


Q ss_pred             CCeEEEEEcCC---CCEEEEEeCC-----CcEEEEECCCCe----eeeEecCCCCCeEEEEEecC-C---CEEEEEeCCC
Q psy15421        185 GDVMSLSLAPD---MRTFVSGACD-----ASAKLWDIRDGS----CKQTFPGHESDINAVTFFPN-G---WAFATGSDDA  248 (340)
Q Consensus       185 ~~v~~~~~~~~---~~~~~sg~~d-----g~i~~wd~~~~~----~~~~~~~h~~~v~~v~~~~~-~---~~l~s~s~d~  248 (340)
                      .+..|+.|+|.   ..+|+.|+.+     +.++||....+.    .+.++.+|..+|++++|.|+ |   ..+|+++.||
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence            67889999984   4567777766     589999865542    34577899999999999996 3   3689999999


Q ss_pred             cEEEEeCcCCc-----------------EEEEe-ecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCC---Cceeeee
Q psy15421        249 TCRLFDIRADQ-----------------ELAMY-SHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM---KTERAGI  307 (340)
Q Consensus       249 ~i~iwd~~~~~-----------------~~~~~-~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~---~~~~~~~  307 (340)
                       |+||.++...                 ++... ...++.+.|..+.|+-.|.+|++.++||.||+|...   ..++...
T Consensus       250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv  328 (361)
T KOG2445|consen  250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSV  328 (361)
T ss_pred             -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeE
Confidence             9999987311                 11111 245666789999999999999999999999999853   2344444


Q ss_pred             ec
Q psy15421        308 LA  309 (340)
Q Consensus       308 ~~  309 (340)
                      +.
T Consensus       329 ~~  330 (361)
T KOG2445|consen  329 LK  330 (361)
T ss_pred             Ee
Confidence            43

>KOG0646|consensus

Probab=99.94  E-value=8.4e-25  Score=184.79  Aligned_cols=230  Identities=16%  Similarity=0.246  Sum_probs=192.6

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccC-----C
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKT-----R  129 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~-----~  129 (340)
                      .++|.+++-+|+|.+|+.|+-.|.|++|-+.+|..+..+..|...|+++.|+-||.++++|+.|+.|.+|.+-.     .
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            46799999999999999988999999999999999999999999999999999999999999999999998642     2


Q ss_pred             CCceEEEEeecCCCcceEEEEEcCC---CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q psy15421        130 EGNVRVSRELPGHTGYLSCCRFLDD---NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDA  206 (340)
Q Consensus       130 ~~~~~~~~~~~~~~~~v~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg  206 (340)
                      .......+.+..|+-.|..+....+   .++++++.|.++++||+..+..+..+. ....+.++++.|.+..++.|+.+|
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G  239 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEG  239 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcc
Confidence            2244566778889999988877544   479999999999999999998776654 456799999999999999999999


Q ss_pred             cEEEEECCC----------------CeeeeEecCCCC--CeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCC
Q psy15421        207 SAKLWDIRD----------------GSCKQTFPGHES--DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDN  268 (340)
Q Consensus       207 ~i~~wd~~~----------------~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  268 (340)
                      .|.+.++..                +..+..+.||..  +|+|++++.||..|++|+.||.+.+||+.+.+.+....+  
T Consensus       240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~--  317 (476)
T KOG0646|consen  240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT--  317 (476)
T ss_pred             eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh--
Confidence            999887632                223456778988  999999999999999999999999999998887765542  


Q ss_pred             cccceEEEEEcCCCcEEEE
Q psy15421        269 IICGITSVAFSRSGRLLLA  287 (340)
Q Consensus       269 ~~~~i~~~~~s~~~~~l~~  287 (340)
                      ...+|+.+.+.|-.+-...
T Consensus       318 ~kgpVtnL~i~~~~~~~~l  336 (476)
T KOG0646|consen  318 SKGPVTNLQINPLERGIIL  336 (476)
T ss_pred             hccccceeEeeccccceec
Confidence            3346888888665443333

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=2e-22  Score=174.29  Aligned_cols=264  Identities=14%  Similarity=0.098  Sum_probs=189.4

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeE-EEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEE-eCCCeEEEE
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNL-VSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACG-GLDNICSIY  124 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~-~~d~~v~i~  124 (340)
                      ..+++.+|.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|+++.++++ ..++.+++|
T Consensus        23 ~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~  100 (300)
T TIGR03866        23 VTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVI  100 (300)
T ss_pred             eEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEE
Confidence            3455665543 6789999999876 5677899999999998887766655443 4678899999977654 568999999


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCC-eEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEE-
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDM-SCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVS-  201 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~-~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s-  201 (340)
                      |+.+..    ....++. ......+.+.+++ .++++..++ .+.+||..+++...... ....+.+++|+|+++.++. 
T Consensus       101 d~~~~~----~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~  174 (300)
T TIGR03866       101 DIETRK----VLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVS  174 (300)
T ss_pred             ECCCCe----EEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEE
Confidence            987642    2222221 1224557777765 455555554 57788998877655443 2334678999999998754 


Q ss_pred             EeCCCcEEEEECCCCeeeeEecCCC-----C--CeEEEEEecCCCEEE-EEeCCCcEEEEeCcCCcEEEEeecCCcccce
Q psy15421        202 GACDASAKLWDIRDGSCKQTFPGHE-----S--DINAVTFFPNGWAFA-TGSDDATCRLFDIRADQELAMYSHDNIICGI  273 (340)
Q Consensus       202 g~~dg~i~~wd~~~~~~~~~~~~h~-----~--~v~~v~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i  273 (340)
                      +..++.|++||+++++....+..+.     .  ....++|+|++++++ +.+.++.+.+||..+.+.+....+.   ..+
T Consensus       175 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~  251 (300)
T TIGR03866       175 SEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRV  251 (300)
T ss_pred             cCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCc
Confidence            4569999999999987766553221     1  234688999998754 4456778999999877665544322   247


Q ss_pred             EEEEEcCCCcEEEEE-eCCCcEEEEeCCCceeeeeeccCCcceEEEEECC
Q psy15421        274 TSVAFSRSGRLLLAG-YDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTE  322 (340)
Q Consensus       274 ~~~~~s~~~~~l~~g-~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~  322 (340)
                      .+++|+|+|++|+++ ..++.|.+||..+++.+..+... ...+.++++|
T Consensus       252 ~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       252 WQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             ceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            889999999999886 46899999999999988888644 5568888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4328|consensus

Probab=99.93  E-value=3.3e-24  Score=180.81  Aligned_cols=289  Identities=17%  Similarity=0.232  Sum_probs=211.9

Q ss_pred             EEecCccCcEEEEEEcCCC--CeEEEEeCCCeEEEEeCCCCC----eeEEeeCCCCcEEEEEECCC-CCEEEEEeCCCeE
Q psy15421         49 RTLRGHLAKIYAMHWGSDS--RNLVSASQDGKLIVWDSYTTN----KVHAIPLRSSWVMTCAYAPS-GSFVACGGLDNIC  121 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~--~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~i~~v~~~~~-~~~l~~~~~d~~v  121 (340)
                      ...+-|..+|++++|+|..  +++++|+.-|.|-+||+.+.+    .+..+..|..+|.++.|+|. ...+++.+.||++
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti  259 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI  259 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence            3456678899999999964  578899999999999994222    24556678899999999984 5688999999999


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCce-EEEEecCCCCeEEEEEcCCC-CE
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQ-CASFIGHTGDVMSLSLAPDM-RT  198 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~  198 (340)
                      ++-|+......  ...........+..+.|+.+ ..++.+..=|...+||++++.. ...+.-|...|.+|+++|.. .+
T Consensus       260 R~~D~~~~i~e--~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~  337 (498)
T KOG4328|consen  260 RLQDFEGNISE--EVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF  337 (498)
T ss_pred             eeeeecchhhH--HHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence            99998653211  11112122333444555443 4566666666999999998764 55566788899999999965 47


Q ss_pred             EEEEeCCCcEEEEECCCCeeee----EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCc----CCcEEEEeecCCcc
Q psy15421        199 FVSGACDASAKLWDIRDGSCKQ----TFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIR----ADQELAMYSHDNII  270 (340)
Q Consensus       199 ~~sg~~dg~i~~wd~~~~~~~~----~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~----~~~~~~~~~~~~~~  270 (340)
                      ++|++.|++.+|||++.-....    ..-.|...|+++.|+|.+-.+++-+.|..|+|||..    ...++.++.|....
T Consensus       338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t  417 (498)
T KOG4328|consen  338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT  417 (498)
T ss_pred             eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcc
Confidence            8899999999999998643222    234699999999999998789999999999999983    33344455553321


Q ss_pred             ---cceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeecc-CCcceEEE-EECCCCCEEEEee-CCCcEEec
Q psy15421        271 ---CGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAG-HDNRVSCL-GVTEDGMAVATGS-WDSFLRIW  339 (340)
Q Consensus       271 ---~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~-h~~~i~~~-~~s~d~~~l~s~s-~D~~i~iW  339 (340)
                         ......+|.|+..++++|-.-..|-|+|-..++.+..+.. -...|.++ .|+|-+..+++|+ .-|.|.||
T Consensus       418 ~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf  492 (498)
T KOG4328|consen  418 GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF  492 (498)
T ss_pred             cccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence               1245679999999999999999999999776665555433 33456654 8899887555554 56888887

>KOG1538|consensus

Probab=99.93  E-value=7e-24  Score=186.49  Aligned_cols=270  Identities=17%  Similarity=0.284  Sum_probs=214.2

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEE
Q psy15421         57 KIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVS  136 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~  136 (340)
                      .|+.++|.|||..|+.+..+ .+.++|..++..+.++++|.+.|++++|+.||+.+|+|+.|+.|.+|.-... +..+  
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~Lk--   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GILK--   89 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-ceee--
Confidence            89999999999988765554 7899999999999999999999999999999999999999999999986542 2222  


Q ss_pred             EeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy15421        137 RELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG  216 (340)
Q Consensus       137 ~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~  216 (340)
                         -.|...+.|+.|.+-+..++.+.=....+|....... ... .....+.+++|..||++++.|-.||+|.+-+- ++
T Consensus        90 ---YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V-~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~g  163 (1081)
T KOG1538|consen   90 ---YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSV-SKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NG  163 (1081)
T ss_pred             ---eccCCeeeEeecCchHHHhhhcchhhccccChhhhhH-Hhh-hhheeEEEeeecCCCcEEEEeccCceEEeecC-CC
Confidence               2589999999998876554444556677887654321 111 12346889999999999999999999999863 44


Q ss_pred             eeeeEec---CCCCCeEEEEEecCC-----CEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEE
Q psy15421        217 SCKQTFP---GHESDINAVTFFPNG-----WAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAG  288 (340)
Q Consensus       217 ~~~~~~~---~h~~~v~~v~~~~~~-----~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g  288 (340)
                      +....++   |..++|.+++|+|..     ..++......++.++.+... .+..  .........|+.+.|+|.+++.|
T Consensus       164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk--~r~L~FdP~CisYf~NGEy~LiG  240 (1081)
T KOG1538|consen  164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGK--DRALNFDPCCISYFTNGEYILLG  240 (1081)
T ss_pred             CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecc--cccCCCCchhheeccCCcEEEEc
Confidence            4433343   356789999999963     46888888888888887643 2211  12233346789999999999999


Q ss_pred             eCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        289 YDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       289 ~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +.|+.+.+|. ..+-.++++...+.+|+.|+..|++++++.|..||+|..+|
T Consensus       241 Gsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN  291 (1081)
T KOG1538|consen  241 GSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN  291 (1081)
T ss_pred             cCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence            9999999997 67778888888889999999999999999999999997664

>KOG0300|consensus

Probab=99.93  E-value=7.2e-24  Score=171.41  Aligned_cols=249  Identities=25%  Similarity=0.356  Sum_probs=197.8

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeC------CC------------------------------C--
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS------YT------------------------------T--   87 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~------~~------------------------------~--   87 (340)
                      +...++.||.+.|.++.|++.+.++++++.|++..||..      -.                              +  
T Consensus       181 ~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t  260 (481)
T KOG0300|consen  181 ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT  260 (481)
T ss_pred             cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce
Confidence            445678999999999999999999999999999999952      00                              0  


Q ss_pred             --CeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCe-EEEEeCCC
Q psy15421         88 --NKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSSGDM  164 (340)
Q Consensus        88 --~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~  164 (340)
                        -.+..+.+|...|.++.|-..|..++++++|.+..+||+.+++    +...+.+|...+..|+-++..+ +++.+.|.
T Consensus       261 iRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge----~v~~LtGHd~ELtHcstHptQrLVvTsSrDt  336 (481)
T KOG0300|consen  261 IRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE----VVNILTGHDSELTHCSTHPTQRLVVTSSRDT  336 (481)
T ss_pred             eeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc----eeccccCcchhccccccCCcceEEEEeccCc
Confidence              0234566788888899999999999999999999999998764    4556789999888877766654 66788899


Q ss_pred             eEEEEECCCC-ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eeeEecCCCCCeEEEEEecCCCEEE
Q psy15421        165 SCALWDIETG-QQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS-CKQTFPGHESDINAVTFFPNGWAFA  242 (340)
Q Consensus       165 ~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~  242 (340)
                      +.++||++.. +.+..|++|.+.|+++.|..+. .+++|+.|.+|++||+++.+ ++.++. -.++++-++++..++.+|
T Consensus       337 TFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIA  414 (481)
T KOG0300|consen  337 TFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIA  414 (481)
T ss_pred             eeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEE
Confidence            9999999743 4567899999999999998765 57899999999999998765 344554 567899999999898999


Q ss_pred             EEeCCCcEEEEeCcCCcEEEEee---cCCcccceEEEEEcCCC--cEEEEEeCCCcEEEEeCCC
Q psy15421        243 TGSDDATCRLFDIRADQELAMYS---HDNIICGITSVAFSRSG--RLLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       243 s~s~d~~i~iwd~~~~~~~~~~~---~~~~~~~i~~~~~s~~~--~~l~~g~~d~~i~iw~~~~  301 (340)
                      .--.+..|++||+...+ +..++   ...+.-.|+|++|..+.  .-|++++.|..+.-|++..
T Consensus       415 iPhDNRqvRlfDlnG~R-laRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  415 IPHDNRQVRLFDLNGNR-LARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             eccCCceEEEEecCCCc-cccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence            99999999999997543 32222   22233348999996442  4577888899999998654

>KOG0269|consensus

Probab=99.93  E-value=1.1e-24  Score=194.16  Aligned_cols=238  Identities=18%  Similarity=0.277  Sum_probs=177.5

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCc---ceEEEEEc--CCCeEEEEeCCCeEEEEECCC--
Q psy15421        101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTG---YLSCCRFL--DDNQIVTSSGDMSCALWDIET--  173 (340)
Q Consensus       101 ~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~--~~~~l~~~~~d~~v~iwd~~~--  173 (340)
                      ..|...++-..++.++.. ..++|.+..................   ....+.|.  .++.|++++..|.|.+||+..  
T Consensus        43 nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~  121 (839)
T KOG0269|consen   43 NAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI  121 (839)
T ss_pred             ceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccc
Confidence            445556777777777655 3577776653332222211111111   12223443  356789999999999999986  


Q ss_pred             -CceEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecC-CCEEEEEeCCCcE
Q psy15421        174 -GQQCASFIGHTGDVMSLSLAPDM-RTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPN-GWAFATGSDDATC  250 (340)
Q Consensus       174 -~~~~~~~~~~~~~v~~~~~~~~~-~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i  250 (340)
                       ++.+..|..|...+.+++|++.. .++++||.||+||.||++..+...++.+..+.|+.|.|+|. +.+|+++...|.+
T Consensus       122 rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~l  201 (839)
T KOG0269|consen  122 RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYL  201 (839)
T ss_pred             cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceE
Confidence             56667788999999999999854 57889999999999999999888888888899999999995 7799999999999


Q ss_pred             EEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeecc-CCcceEEEEECCCCC-EEE
Q psy15421        251 RLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAG-HDNRVSCLGVTEDGM-AVA  328 (340)
Q Consensus       251 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~-h~~~i~~~~~s~d~~-~l~  328 (340)
                      ++||++....- .+....+..+|.++.|+|++.+||+|+.|+.|+||+..+.+..-...- -..+|.+|+|-|+.+ .|+
T Consensus       202 qlWDlRqp~r~-~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLA  280 (839)
T KOG0269|consen  202 QLWDLRQPDRC-EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLA  280 (839)
T ss_pred             EEeeccCchhH-HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhh
Confidence            99999975432 111233445799999999999999999999999999765443222222 347899999999876 477


Q ss_pred             EeeC--CCcEEecC
Q psy15421        329 TGSW--DSFLRIWN  340 (340)
Q Consensus       329 s~s~--D~~i~iW~  340 (340)
                      ++|+  |-.|+|||
T Consensus       281 tcsmv~dtsV~VWD  294 (839)
T KOG0269|consen  281 TCSMVVDTSVHVWD  294 (839)
T ss_pred             hhhccccceEEEEe
Confidence            7776  78899997

>KOG4378|consensus

Probab=99.93  E-value=6.6e-24  Score=180.74  Aligned_cols=261  Identities=18%  Similarity=0.259  Sum_probs=201.6

Q ss_pred             cEEEEEEcCCCCe-EEEEeCCCeEEEEeCC--CCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCce
Q psy15421         57 KIYAMHWGSDSRN-LVSASQDGKLIVWDSY--TTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNV  133 (340)
Q Consensus        57 ~v~~~~~s~~~~~-l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~  133 (340)
                      .+.+++|+....+ +++.+.|..+++|.-.  +++....-+.....-.|++......|+++||..+.|+|||++..    
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k----  111 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK----  111 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHH----
Confidence            3899999887653 4455779999999522  22222222222233345555555699999999999999999743    


Q ss_pred             EEEEeecCCCcceEEEEEc-CCCeEEEEeCCCeEEEEECCCCceEEEEecC-CCCeEEEEEcCCCCEE-EEEeCCCcEEE
Q psy15421        134 RVSRELPGHTGYLSCCRFL-DDNQIVTSSGDMSCALWDIETGQQCASFIGH-TGDVMSLSLAPDMRTF-VSGACDASAKL  210 (340)
Q Consensus       134 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~sg~~dg~i~~  210 (340)
                      .+.+.+..|...|.++.|. .+.+|++++..|-|.+..+.+++....|.-. ...|.-+.++|..+++ .+++.+|.|.+
T Consensus       112 l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtl  191 (673)
T KOG4378|consen  112 LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTL  191 (673)
T ss_pred             HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEE
Confidence            3556778899999999996 4568999999999999999998876666543 2346689999988755 57899999999


Q ss_pred             EECCCCeeeeEe-cCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEE
Q psy15421        211 WDIRDGSCKQTF-PGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAG  288 (340)
Q Consensus       211 wd~~~~~~~~~~-~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g  288 (340)
                      ||.....+...+ +.|..|...|+|+|. ...|++.+.|+.|.+||.+..+....+...   .+.+.++|+++|-+|++|
T Consensus       192 wDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG  268 (673)
T KOG4378|consen  192 WDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAG  268 (673)
T ss_pred             EeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec---CCcceeeecCCceEEEee
Confidence            999876665544 679999999999995 567899999999999999876554433222   357899999999999999


Q ss_pred             eCCCcEEEEeCCCc-eeeeeeccCCcceEEEEECCCC
Q psy15421        289 YDDFNCNVWDSMKT-ERAGILAGHDNRVSCLGVTEDG  324 (340)
Q Consensus       289 ~~d~~i~iw~~~~~-~~~~~~~~h~~~i~~~~~s~d~  324 (340)
                      ...|.|..||++.. .++..+..|...|++++|-|..
T Consensus       269 ~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  269 NSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            99999999998644 5688899999999999997654

>KOG0322|consensus

Probab=99.92  E-value=4.6e-24  Score=168.24  Aligned_cols=286  Identities=16%  Similarity=0.210  Sum_probs=201.4

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEee-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP-LRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      ....|++|.+.|+++.|-.++. |++|..-|.|++|++.+...+..+. .+...|+...--|+ ..|.+-+.|..+.+|+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~   83 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT   83 (323)
T ss_pred             CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence            3456779999999999976665 8899999999999999888877777 45567777776676 6677889999999999


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEc--CCC----eEEEEeCCCe--EEEEECCCCceEEEE------ecCCCCeEEEE
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFL--DDN----QIVTSSGDMS--CALWDIETGQQCASF------IGHTGDVMSLS  191 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~----~l~~~~~d~~--v~iwd~~~~~~~~~~------~~~~~~v~~~~  191 (340)
                      +....  ....+.+..  ..+..|.|+  ++.    +++..-..+.  +.+-|.  +...+..      .+-.+.+++..
T Consensus        84 ia~s~--~i~i~Si~~--nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~--g~~tqv~i~dd~~~~Klgsvmc~~  157 (323)
T KOG0322|consen   84 IAYSA--FISIHSIVV--NSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG--GDTTQVQIADDSERSKLGSVMCQD  157 (323)
T ss_pred             ccCcc--eEEEeeeec--cccccccceeccCCCcchhheecCCcccchhhhhcc--CccceeEccCchhccccCceeeee
Confidence            86532  111222221  112233332  111    2222211111  222222  2222111      12345577766


Q ss_pred             EcC-CCC--EEEEEeCCCcEEEEECCCCeeee----------EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCC
Q psy15421        192 LAP-DMR--TFVSGACDASAKLWDIRDGSCKQ----------TFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD  258 (340)
Q Consensus       192 ~~~-~~~--~~~sg~~dg~i~~wd~~~~~~~~----------~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  258 (340)
                      +.. ++.  +++.|..+|.+.+||+.++..+-          ....|.++|.++.+.+.-..=++|+.+..+..|++.-.
T Consensus       158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s  237 (323)
T KOG0322|consen  158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS  237 (323)
T ss_pred             ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence            433 233  45678899999999999874332          23468999999999986656678888889999987632


Q ss_pred             --cEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcE
Q psy15421        259 --QELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFL  336 (340)
Q Consensus       259 --~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i  336 (340)
                        .......+.-...++..+..-||++++|+++.|+.||+|+.++..++..+..|.+.|++++|+||-..||++|.|++|
T Consensus       238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI  317 (323)
T KOG0322|consen  238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARI  317 (323)
T ss_pred             cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence              211111122223468889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecC
Q psy15421        337 RIWN  340 (340)
Q Consensus       337 ~iW~  340 (340)
                      .+|+
T Consensus       318 SLWk  321 (323)
T KOG0322|consen  318 SLWK  321 (323)
T ss_pred             Eeee
Confidence            9996

>KOG1408|consensus

Probab=99.92  E-value=7e-24  Score=187.75  Aligned_cols=240  Identities=21%  Similarity=0.333  Sum_probs=200.8

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECC---CCCEEEEEeCCCeEEEEEccCCCC
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP---SGSFVACGGLDNICSIYSLKTREG  131 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~---~~~~l~~~~~d~~v~i~~~~~~~~  131 (340)
                      .-.+.+++.+|++++|++|..-|.++|+++.+.+....+.+|...|.++.|+.   ..++||+++.|..|.|||...   
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r---  535 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR---  535 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc---
Confidence            45689999999999999999999999999998888888999999999999995   357899999999999999853   


Q ss_pred             ceEEEEeecCCCcceEEEEEcCC---CeEEEEeCCCeEEEEECCCCceEEEEecC-----CCCeEEEEEcCCCCEEEEEe
Q psy15421        132 NVRVSRELPGHTGYLSCCRFLDD---NQIVTSSGDMSCALWDIETGQQCASFIGH-----TGDVMSLSLAPDMRTFVSGA  203 (340)
Q Consensus       132 ~~~~~~~~~~~~~~v~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~sg~  203 (340)
                      +.....++.+|...|+.+.|.-.   -++++++.|+.|.+-..+....-..+..|     ...+..|+..|..+++++++
T Consensus       536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c  615 (1080)
T KOG1408|consen  536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC  615 (1080)
T ss_pred             ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence            34566788999999999999643   25888888988765443321111112222     23578999999999999999


Q ss_pred             CCCcEEEEECCCCeeeeEecC---CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEe-ecCCcccceEEEEEc
Q psy15421        204 CDASAKLWDIRDGSCKQTFPG---HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMY-SHDNIICGITSVAFS  279 (340)
Q Consensus       204 ~dg~i~~wd~~~~~~~~~~~~---h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~~~~i~~~~~s  279 (340)
                      .|+.|++||+++++.++.|++   |++....+..+|.|.|+|+...|+++.++|+-+++.+..+ +|.   ..|+.+.|.
T Consensus       616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs---E~VTG~kF~  692 (1080)
T KOG1408|consen  616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS---EAVTGVKFL  692 (1080)
T ss_pred             cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc---hheeeeeec
Confidence            999999999999999999874   6677888999999999999999999999999998887654 343   348999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCC
Q psy15421        280 RSGRLLLAGYDDFNCNVWDSM  300 (340)
Q Consensus       280 ~~~~~l~~g~~d~~i~iw~~~  300 (340)
                      +|.+.|++.+.||-|.+|.+.
T Consensus       693 nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  693 NDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             ccchhheeecCCceEEEEECc
Confidence            999999999999999999864

>KOG1034|consensus

Probab=99.92  E-value=4.8e-23  Score=167.22  Aligned_cols=292  Identities=21%  Similarity=0.353  Sum_probs=210.6

Q ss_pred             ceeeEEe-EEecCccCcEEEEEEcC----CCC-eEEEEeCCCeEEEEeCCCCC---eeEEe--eCCCCcEEEEEECCC--
Q psy15421         42 RIQMRTR-RTLRGHLAKIYAMHWGS----DSR-NLVSASQDGKLIVWDSYTTN---KVHAI--PLRSSWVMTCAYAPS--  108 (340)
Q Consensus        42 ~~~~~~~-~~~~~h~~~v~~~~~s~----~~~-~l~s~~~d~~i~iwd~~~~~---~~~~~--~~~~~~i~~v~~~~~--  108 (340)
                      +...+.. +....|+.+|+.++|++    +.. .++++|. ..+.++.....-   .++..  ..|....+.++|+-+  
T Consensus        24 k~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~  102 (385)
T KOG1034|consen   24 KRSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSN  102 (385)
T ss_pred             ccceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCC
Confidence            3344433 34568999999999984    233 4555555 467788654322   22222  135666788888754  


Q ss_pred             --CCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC--eEEEEeCCCeEEEEECCCCceEEEE---e
Q psy15421        109 --GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN--QIVTSSGDMSCALWDIETGQQCASF---I  181 (340)
Q Consensus       109 --~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~---~  181 (340)
                        ..++|.||.-|.|+|.|+..+.    ....+.+|...++.+.+.+..  .+++++.|.+|++|+++++.++..+   .
T Consensus       103 ~~~p~la~~G~~GvIrVid~~~~~----~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e  178 (385)
T KOG1034|consen  103 TGNPFLAAGGYLGVIRVIDVVSGQ----CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE  178 (385)
T ss_pred             CCCeeEEeecceeEEEEEecchhh----hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccc
Confidence              4589999999999999987653    445567899999999998764  7899999999999999999887765   5


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeee----------------------Ee------cCCCCCeEEEE
Q psy15421        182 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQ----------------------TF------PGHESDINAVT  233 (340)
Q Consensus       182 ~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~----------------------~~------~~h~~~v~~v~  233 (340)
                      +|.+.|.++.|++++.++++++.|.++++|++...+...                      .+      ..|...|-|+.
T Consensus       179 gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr  258 (385)
T KOG1034|consen  179 GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR  258 (385)
T ss_pred             cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH
Confidence            699999999999999999999999999999987332110                      01      12555566666


Q ss_pred             EecCCCEEEEEeCCCcEEEEeCcC-CcE----------EEEeec-CCcccceEEE--EEcCCCcEEEEEeCCCcEEEEeC
Q psy15421        234 FFPNGWAFATGSDDATCRLFDIRA-DQE----------LAMYSH-DNIICGITSV--AFSRSGRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       234 ~~~~~~~l~s~s~d~~i~iwd~~~-~~~----------~~~~~~-~~~~~~i~~~--~~s~~~~~l~~g~~d~~i~iw~~  299 (340)
                      |.  |.+++|-|-++.|..|-..+ .+.          ...+.. +-..+.+..+  +|.|-+++||.|...|.+.+||+
T Consensus       259 w~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL  336 (385)
T KOG1034|consen  259 WF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDL  336 (385)
T ss_pred             HH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEEC
Confidence            66  46889999999999997621 111          111111 1223445555  45677999999999999999999


Q ss_pred             CCceee--eeeccC--CcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        300 MKTERA--GILAGH--DNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       300 ~~~~~~--~~~~~h--~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ...++.  .++..+  ...|...+||.||..|+...+|++|--||
T Consensus       337 ~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  337 DNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             CCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence            876653  222222  35788999999999999999999998776

>KOG0270|consensus

Probab=99.92  E-value=1.4e-23  Score=176.39  Aligned_cols=235  Identities=16%  Similarity=0.246  Sum_probs=183.4

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCC---------------------eeEEeeCCCCcEEEEEECCC-CCEEEEEeCCCeEEE
Q psy15421         66 DSRNLVSASQDGKLIVWDSYTTN---------------------KVHAIPLRSSWVMTCAYAPS-GSFVACGGLDNICSI  123 (340)
Q Consensus        66 ~~~~l~s~~~d~~i~iwd~~~~~---------------------~~~~~~~~~~~i~~v~~~~~-~~~l~~~~~d~~v~i  123 (340)
                      .|+++|.|..|..|.|||+.-..                     ......+|..+|..++|... .+.||+|+.|++|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            36799999999999999973111                     01112356677777777654 578999999999999


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC-EEE
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR-TFV  200 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~  200 (340)
                      ||+.++.    ...++..|...|.++.|++.  ..|++|+.|++|.+.|.+............+.|-.++|.|... .++
T Consensus       271 WD~~~g~----p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~  346 (463)
T KOG0270|consen  271 WDVDTGK----PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFF  346 (463)
T ss_pred             EEcCCCC----cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEE
Confidence            9998764    33456679999999999764  4799999999999999985444333344567799999999765 567


Q ss_pred             EEeCCCcEEEEECCCC-eeeeEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEE
Q psy15421        201 SGACDASAKLWDIRDG-SCKQTFPGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAF  278 (340)
Q Consensus       201 sg~~dg~i~~wd~~~~-~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  278 (340)
                      ++..||+|+-+|+|+. +++.+++.|.++|.++++++. ...+++++.|+.+++|++....+.....+........|+++
T Consensus       347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~  426 (463)
T KOG0270|consen  347 VSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFAL  426 (463)
T ss_pred             EecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeeccc
Confidence            8889999999999975 789999999999999999975 45789999999999999986655444445444555778888


Q ss_pred             cCCCc-EEEEEeCCCcEEEEeCCCcee
Q psy15421        279 SRSGR-LLLAGYDDFNCNVWDSMKTER  304 (340)
Q Consensus       279 s~~~~-~l~~g~~d~~i~iw~~~~~~~  304 (340)
                      .|+-. +|+.|+..+.+++||..+...
T Consensus       427 ~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  427 DPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             CCCcceEEEecCccceEEEeecccChh
Confidence            88755 567788888999999876654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.92  E-value=9.8e-21  Score=170.44  Aligned_cols=285  Identities=32%  Similarity=0.560  Sum_probs=227.2

Q ss_pred             EecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC-eeEEeeCCC-CcEEEEEE-CCCCC-EEEEEeC-CCeEEEE
Q psy15421         50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN-KVHAIPLRS-SWVMTCAY-APSGS-FVACGGL-DNICSIY  124 (340)
Q Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~-~~i~~v~~-~~~~~-~l~~~~~-d~~v~i~  124 (340)
                      .+.+|...+..+.+.+.+..++.++.|+.+.+|+..... ....+.... ..+..+.+ .+++. +++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            567899999999999999999999999999999988776 556665533 35666666 78887 5555444 8999999


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeC-CCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC-EEEE
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSG-DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR-TFVS  201 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s  201 (340)
                      +...   .......+..|...+..+.|.+++ .++.++. |+.+++|++..+..+..+..|...+.+++++|++. .+++
T Consensus       140 ~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  216 (466)
T COG2319         140 DLST---PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS  216 (466)
T ss_pred             EecC---CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEE
Confidence            9865   113445667899999999998876 5666665 99999999998888888888999999999999998 5555


Q ss_pred             EeCCCcEEEEECCCCeeee-EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcE-EEEeecCCcccceEEEEEc
Q psy15421        202 GACDASAKLWDIRDGSCKQ-TFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQE-LAMYSHDNIICGITSVAFS  279 (340)
Q Consensus       202 g~~dg~i~~wd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s  279 (340)
                      ++.|+.|++||...+.... .+.+|.... ...|+|++..+++++.|+.+++|+.+.... +..+  ..+...+.++.|+
T Consensus       217 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~  293 (466)
T COG2319         217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSVLSVAFS  293 (466)
T ss_pred             ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccEEEEEEC
Confidence            5999999999998777777 688888775 448999998999999999999999986654 3333  2224568899999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCceeeeeec--cCCcceEEEEECCCCCEEEEe-eCCCcEEecC
Q psy15421        280 RSGRLLLAGYDDFNCNVWDSMKTERAGILA--GHDNRVSCLGVTEDGMAVATG-SWDSFLRIWN  340 (340)
Q Consensus       280 ~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~--~h~~~i~~~~~s~d~~~l~s~-s~D~~i~iW~  340 (340)
                      |++..+++++.|+.+++|+..+........  .|...+..+.|.+++..++.+ ..|+.+++|+
T Consensus       294 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  357 (466)
T COG2319         294 PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD  357 (466)
T ss_pred             CCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence            988888889989999999988777666655  888889999994343455555 6888898885

>KOG4283|consensus

Probab=99.92  E-value=6.8e-23  Score=164.13  Aligned_cols=244  Identities=23%  Similarity=0.355  Sum_probs=176.4

Q ss_pred             CCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEccCCCC---c-e--EEEE-----eecCCCcceEEEEEc--CCCeEEEE
Q psy15421         95 LRSSWVMTCAYAP-SGSFVACGGLDNICSIYSLKTREG---N-V--RVSR-----ELPGHTGYLSCCRFL--DDNQIVTS  160 (340)
Q Consensus        95 ~~~~~i~~v~~~~-~~~~l~~~~~d~~v~i~~~~~~~~---~-~--~~~~-----~~~~~~~~v~~~~~~--~~~~l~~~  160 (340)
                      .|.+.|.++...+ .|+|+++|+.|+.+-+||+.....   . .  +...     ...+|.-.|..+.|.  +.+.+.++
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            4556666666665 589999999999999999976431   0 0  0111     113577778877774  45778888


Q ss_pred             eCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecC
Q psy15421        161 SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPD---MRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPN  237 (340)
Q Consensus       161 ~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~  237 (340)
                      +-|.++++||.++-+....|. ..+.|.+-+++|-   .-++++|..|-+|++.|+.+|.+.+++.||.+.|.+|.|+|.
T Consensus       121 SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~  199 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS  199 (397)
T ss_pred             cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence            889999999999987766553 5567877788773   347888999999999999999999999999999999999997


Q ss_pred             C-CEEEEEeCCCcEEEEeCcCC-cEEEEee------------cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCce
Q psy15421        238 G-WAFATGSDDATCRLFDIRAD-QELAMYS------------HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTE  303 (340)
Q Consensus       238 ~-~~l~s~s~d~~i~iwd~~~~-~~~~~~~------------~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~  303 (340)
                      . ..|++|+.||.|++||++.- .....+.            ...+...++.++|+.++.++++.+.|..+++|+..+++
T Consensus       200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            4 56899999999999999753 1221111            11233458999999999999999999999999987664


Q ss_pred             ee-e---ee-------------ccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        304 RA-G---IL-------------AGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       304 ~~-~---~~-------------~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .- .   ..             ..|.+.+.-+... ++.+|++......|+.|+
T Consensus       280 ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~-~~lall~~~sgs~ir~l~  332 (397)
T KOG4283|consen  280 NTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPND-GSLALLNLLEGSFVRRLS  332 (397)
T ss_pred             ccccccccccccccccceEEEeecccceEEEEecC-CeEEEEEccCceEEEeee
Confidence            21 1   10             1122222222212 445677777778888885

>KOG0642|consensus

Probab=99.92  E-value=7.9e-24  Score=182.86  Aligned_cols=258  Identities=19%  Similarity=0.293  Sum_probs=194.8

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCC--------CCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYT--------TNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD  118 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~--------~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d  118 (340)
                      .+.+++.|.+.|..++|++-.+.|++++.||++++|+++.        -+.+.++++|..+|.|+++++++.++++|+.|
T Consensus       286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D  365 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID  365 (577)
T ss_pred             eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence            3458899999999999999999999999999999999832        23578999999999999999999999999999


Q ss_pred             CeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCE
Q psy15421        119 NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRT  198 (340)
Q Consensus       119 ~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  198 (340)
                      |+|+.|++.. ....     ...                           +|..  .....+.+|.+.++.+++++...+
T Consensus       366 g~I~~w~~p~-n~dp-----~ds---------------------------~dp~--vl~~~l~Ghtdavw~l~~s~~~~~  410 (577)
T KOG0642|consen  366 GTIRCWNLPP-NQDP-----DDS---------------------------YDPS--VLSGTLLGHTDAVWLLALSSTKDR  410 (577)
T ss_pred             ceeeeeccCC-CCCc-----ccc---------------------------cCcc--hhccceeccccceeeeeecccccc
Confidence            9999999762 2110     000                           1110  122456789999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCeeeeEecCCC--CCeEEEEEecCC-CEEEEEeCCCcEEEEeCcCCcEEEEeecC-----Ccc
Q psy15421        199 FVSGACDASAKLWDIRDGSCKQTFPGHE--SDINAVTFFPNG-WAFATGSDDATCRLFDIRADQELAMYSHD-----NII  270 (340)
Q Consensus       199 ~~sg~~dg~i~~wd~~~~~~~~~~~~h~--~~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-----~~~  270 (340)
                      |++++.||++++|+...... .++....  +...++++-... .+.++...-+.--++++...+.+..+...     ...
T Consensus       411 Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~  489 (577)
T KOG0642|consen  411 LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRY  489 (577)
T ss_pred             eeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccccc
Confidence            99999999999999876655 3332211  223345544322 12222222233334444433333333211     112


Q ss_pred             cceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        271 CGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       271 ~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ..++.+.++|.+.+.+++..|+.|+++|..+++.+..+..|...++++++-|+|.+|++|+.|+.+++|+
T Consensus       490 ~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k  559 (577)
T KOG0642|consen  490 PQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK  559 (577)
T ss_pred             CccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence            3478899999999999999999999999999999999999999999999999999999999999999995

>KOG0302|consensus

Probab=99.92  E-value=1.4e-23  Score=173.16  Aligned_cols=202  Identities=23%  Similarity=0.405  Sum_probs=157.9

Q ss_pred             ecCCCcceEEEEEcC---CCeEEEEeCCCeEEEEECCC----------------CceEEEEecCCCCeEEEEEcCCCC-E
Q psy15421        139 LPGHTGYLSCCRFLD---DNQIVTSSGDMSCALWDIET----------------GQQCASFIGHTGDVMSLSLAPDMR-T  198 (340)
Q Consensus       139 ~~~~~~~v~~~~~~~---~~~l~~~~~d~~v~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~-~  198 (340)
                      ...|.+.++.+.-.+   .-..++-+..|.|.||++..                .+++.++.+|...-..++|+|-.. .
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            345555555444322   22344456689999999742                245667888999999999999443 4


Q ss_pred             EEEEeCCCcEEEEECCCCee---eeEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceE
Q psy15421        199 FVSGACDASAKLWDIRDGSC---KQTFPGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGIT  274 (340)
Q Consensus       199 ~~sg~~dg~i~~wd~~~~~~---~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~  274 (340)
                      ++||..-+.|++|...++.=   ...+.+|...|..+.|+|. ...|||||-||+|+|||++.+.....+....+...|+
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN  306 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN  306 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence            78898999999999887642   2346689999999999996 5689999999999999999874333333344455799


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEEEeCCCc---eeeeeeccCCcceEEEEECCC-CCEEEEeeCCCcEEecC
Q psy15421        275 SVAFSRSGRLLLAGYDDFNCNVWDSMKT---ERAGILAGHDNRVSCLGVTED-GMAVATGSWDSFLRIWN  340 (340)
Q Consensus       275 ~~~~s~~~~~l~~g~~d~~i~iw~~~~~---~~~~~~~~h~~~i~~~~~s~d-~~~l~s~s~D~~i~iW~  340 (340)
                      .+.|+..-.+||+|++||+++|||++..   .++..+..|..+|+++.|+|. ...|+++|.|.+|.|||
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD  376 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD  376 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence            9999999889999999999999998654   567889999999999999984 46788888999999997

>KOG2048|consensus

Probab=99.91  E-value=5e-21  Score=168.83  Aligned_cols=279  Identities=16%  Similarity=0.226  Sum_probs=215.8

Q ss_pred             EecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCe-eEEeeC-CCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNK-VHAIPL-RSSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~-~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      .+.--..+|.+|||+.+.+.||.+=.||.|.|||+...=. ...+.+ .+..|-.++|. ++..|++.+.+|.|.-||+.
T Consensus        20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLH   98 (691)
T ss_pred             EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecc
Confidence            3344468999999999999999999999999999876432 233333 35678999999 56667788999999999998


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEE--EEecCCCCeEEEEEcCCCCEEEEEeC
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCA--SFIGHTGDVMSLSLAPDMRTFVSGAC  204 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~sg~~  204 (340)
                      +..    ..+......+.+.+++..+.+ .++.|+.||.+.+.+...++...  .+...++.+.+++|+|++..+++|+.
T Consensus        99 ~lk----~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~  174 (691)
T KOG2048|consen   99 TLK----QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI  174 (691)
T ss_pred             cCc----eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence            764    334455667788888777654 67778899988888887766442  33446689999999999999999999


Q ss_pred             CCcEEEEECCCCeeeeEe----cC----CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEE
Q psy15421        205 DASAKLWDIRDGSCKQTF----PG----HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSV  276 (340)
Q Consensus       205 dg~i~~wd~~~~~~~~~~----~~----h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~  276 (340)
                      ||.|++||..++......    .+    ...-|++|.|-.++ .+++|.+.|+|++||-..+..+..+  ..+...|.++
T Consensus       175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~--~~h~adVl~L  251 (691)
T KOG2048|consen  175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSH--SCHDADVLAL  251 (691)
T ss_pred             CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhh--hhhhcceeEE
Confidence            999999999988765521    11    22236777777655 7999999999999998876555433  2334459999


Q ss_pred             EEcCCCcEEEEEeCCCcEEEEeCCCce----eeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        277 AFSRSGRLLLAGYDDFNCNVWDSMKTE----RAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       277 ~~s~~~~~l~~g~~d~~i~iw~~~~~~----~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      +.++++.++++++-|+.|..|...+..    .......|...|.+++..++  .|++|+.|..+.+
T Consensus       252 av~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  252 AVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI  315 (691)
T ss_pred             EEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence            999999999999999999888754432    34455678899999999988  8999999998765

>KOG2919|consensus

Probab=99.91  E-value=3.7e-22  Score=161.81  Aligned_cols=272  Identities=17%  Similarity=0.269  Sum_probs=201.7

Q ss_pred             EEEEEEcCCCCeEEEEeCCCeEEEEeCCC----CC--------eeEEee-CCCCcEEEEEE-------CCCCCEEEEEeC
Q psy15421         58 IYAMHWGSDSRNLVSASQDGKLIVWDSYT----TN--------KVHAIP-LRSSWVMTCAY-------APSGSFVACGGL  117 (340)
Q Consensus        58 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~----~~--------~~~~~~-~~~~~i~~v~~-------~~~~~~l~~~~~  117 (340)
                      ...+.|+|||..|++-+.|..+++|++-.    .+        ...+++ .....|+..+|       .|+.+++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            45688999999999999999999998631    11        111111 12234555544       367899999999


Q ss_pred             CCeEEEEEccCCCCceEEEEeecCCCc---ceEEEEEcCCCeEEEEeCCCeEEEEEC-CCCceEEEE-------ecCCCC
Q psy15421        118 DNICSIYSLKTREGNVRVSRELPGHTG---YLSCCRFLDDNQIVTSSGDMSCALWDI-ETGQQCASF-------IGHTGD  186 (340)
Q Consensus       118 d~~v~i~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~l~~~~~d~~v~iwd~-~~~~~~~~~-------~~~~~~  186 (340)
                      +..|++||.-+++....  ...-.|..   ...++.|++++.-+.++..++|+++|+ +.|.-...+       ++..+-
T Consensus       132 ~~PIh~wdaftG~lraS--y~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRAS--YRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             cCceeeeeccccccccc--hhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence            99999999987653322  11112222   235678888876666778999999999 555432221       234667


Q ss_pred             eEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCcCCc-EEEE
Q psy15421        187 VMSLSLAPDM-RTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSD-DATCRLFDIRADQ-ELAM  263 (340)
Q Consensus       187 v~~~~~~~~~-~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-d~~i~iwd~~~~~-~~~~  263 (340)
                      +.+++|+|.. +.++.|+--..+-|+.-..+.+...+-+|.+.|+-+.|.++|..|.+|+. |-.|..||++..+ ++..
T Consensus       210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~  289 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA  289 (406)
T ss_pred             eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence            8999999955 48889999999999988888888888899999999999999999999986 7789999999643 3332


Q ss_pred             e-ecCC-cccceEEEEEcCCCcEEEEEeCCCcEEEEeCCC-ceeeeeeccCCcceEEEEECCCCCEEEEeeC
Q psy15421        264 Y-SHDN-IICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK-TERAGILAGHDNRVSCLGVTEDGMAVATGSW  332 (340)
Q Consensus       264 ~-~~~~-~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~-~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~  332 (340)
                      + .+.. ....| -+...|++++|++|+.||.|++||+.+ ++....+..|...++.+++.|-=..++++|.
T Consensus       290 L~rhv~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  290 LERHVGDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG  360 (406)
T ss_pred             hhhhccCccceE-EEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence            2 2222 22233 345579999999999999999999987 5667778889999999999999667777664

>KOG1539|consensus

Probab=99.91  E-value=2.2e-21  Score=174.61  Aligned_cols=280  Identities=20%  Similarity=0.322  Sum_probs=227.6

Q ss_pred             CcEEEEEEcCC--CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCce
Q psy15421         56 AKIYAMHWGSD--SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNV  133 (340)
Q Consensus        56 ~~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~  133 (340)
                      +.|+++. ||.  -+.++.|+.+|.++|||+.+++.+++++.+.+.|+++.-+|--..+|.|-.+|+|.+++++.++   
T Consensus       160 ~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk---  235 (910)
T KOG1539|consen  160 DFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDK---  235 (910)
T ss_pred             CceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCc---
Confidence            3366664 564  3678899999999999999999999999999999999999999999999999999999998764   


Q ss_pred             EEEEeecCCCcceEEEEEcCCC--eEEEEeCCCeEEEEECCCCceEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q psy15421        134 RVSRELPGHTGYLSCCRFLDDN--QIVTSSGDMSCALWDIETGQQCASFI-GHTGDVMSLSLAPDMRTFVSGACDASAKL  210 (340)
Q Consensus       134 ~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~sg~~dg~i~~  210 (340)
                       +..++....+.|+.+.|..++  .+++++..|.+.+||++..+.+..+. .|.+.+....|.|....+++.+.|+.+++
T Consensus       236 -il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~  314 (910)
T KOG1539|consen  236 -ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKV  314 (910)
T ss_pred             -EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeE
Confidence             445554446899999998665  46677778999999999887776665 68899999999999999999999999999


Q ss_pred             EECCCC----eeeeEecCCCCCeEEEEEe-cCCCEEEEEeCCCcEEEEeCcCC-------c-------------------
Q psy15421        211 WDIRDG----SCKQTFPGHESDINAVTFF-PNGWAFATGSDDATCRLFDIRAD-------Q-------------------  259 (340)
Q Consensus       211 wd~~~~----~~~~~~~~h~~~v~~v~~~-~~~~~l~s~s~d~~i~iwd~~~~-------~-------------------  259 (340)
                      |=..++    +..+.-.||..|..++.|. .+|..+.+++.|++.+.+++...       +                   
T Consensus       315 ~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k  394 (910)
T KOG1539|consen  315 WVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLK  394 (910)
T ss_pred             EEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhc
Confidence            855543    3355667899999999998 56888888899988877764210       0                   


Q ss_pred             --EEEE--------------------------------------eecC---CcccceEEEEEcCCCcEEEEEeCCCcEEE
Q psy15421        260 --ELAM--------------------------------------YSHD---NIICGITSVAFSRSGRLLLAGYDDFNCNV  296 (340)
Q Consensus       260 --~~~~--------------------------------------~~~~---~~~~~i~~~~~s~~~~~l~~g~~d~~i~i  296 (340)
                        ++..                                      +.+.   .....+++++.+++|++.+.|+..|.|.+
T Consensus       395 ~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~  474 (910)
T KOG1539|consen  395 LPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDR  474 (910)
T ss_pred             CCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEE
Confidence              0000                                      0000   01123689999999999999999999999


Q ss_pred             EeCCCceeeeee---ccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        297 WDSMKTERAGIL---AGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       297 w~~~~~~~~~~~---~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ||..++-..+.+   ..|.++|+.++...-++.++|++.||-++.||
T Consensus       475 fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~  521 (910)
T KOG1539|consen  475 FNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWD  521 (910)
T ss_pred             EEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEe
Confidence            999998877777   47999999999999899999999999999996

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.90  E-value=1.3e-19  Score=163.04  Aligned_cols=286  Identities=30%  Similarity=0.583  Sum_probs=226.0

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeC-CCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCC-EEEEEeCCCeEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQ-DGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGS-FVACGGLDNICSI  123 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~-~l~~~~~d~~v~i  123 (340)
                      .....+.+|...|..++|+|++..+++++. |+.+++|+..+...+..+..|...+.+++|+|++. ++++++.|+.+++
T Consensus       146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  225 (466)
T COG2319         146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL  225 (466)
T ss_pred             eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence            556778999999999999999999998886 99999999998888888888999999999999998 5555699999999


Q ss_pred             EEccCCCCceEEEE-eecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCce-EEEEecCCCCeEEEEEcCCCCEEE
Q psy15421        124 YSLKTREGNVRVSR-ELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQ-CASFIGHTGDVMSLSLAPDMRTFV  200 (340)
Q Consensus       124 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~  200 (340)
                      |+...+.    ... .+.+|.... ...|.+++ .+++++.|+.+++|++..... ...+..|...+.++.|.|++..++
T Consensus       226 wd~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  300 (466)
T COG2319         226 WDLSTGK----LLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA  300 (466)
T ss_pred             EECCCCc----EEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEE
Confidence            9776322    222 566777765 33666665 677889999999999987665 444467888999999999888888


Q ss_pred             EEeCCCcEEEEECCCCeeeeEec--CCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCcCCcEEEEeecCCcccceEEEE
Q psy15421        201 SGACDASAKLWDIRDGSCKQTFP--GHESDINAVTFFPNGWAFATG-SDDATCRLFDIRADQELAMYSHDNIICGITSVA  277 (340)
Q Consensus       201 sg~~dg~i~~wd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  277 (340)
                      +++.|+.+++||.+.........  .|...+..+.+.+++..++.+ ..|+.+.+|+.............   ..+..+.
T Consensus       301 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~  377 (466)
T COG2319         301 SGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH---SNVLSVS  377 (466)
T ss_pred             EeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC---ceEEEEE
Confidence            89999999999998877655554  788789999994332455555 68899999999876622222111   1167888


Q ss_pred             EcCCCcEEEE-EeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        278 FSRSGRLLLA-GYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       278 ~s~~~~~l~~-g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +.+ ...+.. +..++.+.+|+............+...+....+++++..+++++.++.+++|+
T Consensus       378 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (466)
T COG2319         378 FSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD  440 (466)
T ss_pred             ECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence            888 544444 68899999999887777666655448899999999999999999999999995

>KOG0302|consensus

Probab=99.90  E-value=6.5e-22  Score=163.34  Aligned_cols=243  Identities=21%  Similarity=0.318  Sum_probs=181.5

Q ss_pred             cCccCcEEEEEEcCCC--CeEEEEeCCCeEEEEeCC----------------CCCeeEEeeCCCCcEEEEEECCC-CCEE
Q psy15421         52 RGHLAKIYAMHWGSDS--RNLVSASQDGKLIVWDSY----------------TTNKVHAIPLRSSWVMTCAYAPS-GSFV  112 (340)
Q Consensus        52 ~~h~~~v~~~~~s~~~--~~l~s~~~d~~i~iwd~~----------------~~~~~~~~~~~~~~i~~v~~~~~-~~~l  112 (340)
                      -+|.+.|.-+.-++-+  .+.++=+..|.|+|||+.                ..+.++++.+|...=+.+.|||- ...|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            3566666666666654  445555778999999973                12356788888877789999993 3347


Q ss_pred             EEEeCCCeEEEEEccCCCCceEE-EEeecCCCcceEEEEEcC--CCeEEEEeCCCeEEEEECCCCc--eEEEEecCCCCe
Q psy15421        113 ACGGLDNICSIYSLKTREGNVRV-SRELPGHTGYLSCCRFLD--DNQIVTSSGDMSCALWDIETGQ--QCASFIGHTGDV  187 (340)
Q Consensus       113 ~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~v  187 (340)
                      ++|..-+.|++|...++  .+.. ...+.+|+..|-.+.|++  ++.|++|+-|++|+|||++.+.  ......+|.+.|
T Consensus       228 lsGDc~~~I~lw~~~~g--~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV  305 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTG--SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV  305 (440)
T ss_pred             ccCccccceEeeeeccC--ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence            88888899999998763  3322 234567999999999975  4679999999999999999873  233347899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCC---CeeeeEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCCcE---
Q psy15421        188 MSLSLAPDMRTFVSGACDASAKLWDIRD---GSCKQTFPGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQE---  260 (340)
Q Consensus       188 ~~~~~~~~~~~~~sg~~dg~i~~wd~~~---~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~~---  260 (340)
                      +.+.|+.+..+|++|+.||+++|||+|+   ++++..|+-|..+|++|.|+|. ...|++++.|..|.|||+....-   
T Consensus       306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee  385 (440)
T KOG0302|consen  306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE  385 (440)
T ss_pred             eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence            9999999988999999999999999986   4567899999999999999995 56889999999999999753111   


Q ss_pred             --------------EEEeecCCcccceEEEEEcCCCc-EEEEEeCCCcEEEEe
Q psy15421        261 --------------LAMYSHDNIICGITSVAFSRSGR-LLLAGYDDFNCNVWD  298 (340)
Q Consensus       261 --------------~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~d~~i~iw~  298 (340)
                                    ...|-|... ..+..+.|++.-. +|++-+-|| +.||.
T Consensus       386 ~~~~a~~~L~dlPpQLLFVHqGQ-ke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  386 IDQEAAEGLQDLPPQLLFVHQGQ-KEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             hccccccchhcCCceeEEEecch-hHhhhheeccCCCCeEEEecccc-eeEEE
Confidence                          112223222 2366788988744 555555565 55554

>KOG4328|consensus

Probab=99.90  E-value=4.7e-22  Score=167.89  Aligned_cols=254  Identities=22%  Similarity=0.270  Sum_probs=189.0

Q ss_pred             CCCeeEEeeCCCCcEEEEEECCCC--CEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC--CeEEEEe
Q psy15421         86 TTNKVHAIPLRSSWVMTCAYAPSG--SFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSS  161 (340)
Q Consensus        86 ~~~~~~~~~~~~~~i~~v~~~~~~--~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~  161 (340)
                      +.......+.+...|.+++|+|..  +.+++|+.-|.|-+|++.+.+....-...+..|...|.++.|++.  .++++.+
T Consensus       175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS  254 (498)
T KOG4328|consen  175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS  254 (498)
T ss_pred             cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence            333444566778899999999964  588899999999999997444333334456789999999999865  4799999


Q ss_pred             CCCeEEEEECCCCceEEEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-eeEecCCCCCeEEEEEecC-
Q psy15421        162 GDMSCALWDIETGQQCASFIG--HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC-KQTFPGHESDINAVTFFPN-  237 (340)
Q Consensus       162 ~d~~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~-~~~~~~h~~~v~~v~~~~~-  237 (340)
                      .||+|++-|++.+..-..+..  -...+.++.|+.+...++.|..=|.+.+||++++.. ...+.-|...|++|++.|. 
T Consensus       255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~  334 (498)
T KOG4328|consen  255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC  334 (498)
T ss_pred             cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC
Confidence            999999999987643222221  233467888888888888888888999999998654 4456678889999999996 


Q ss_pred             CCEEEEEeCCCcEEEEeCcCCcEEE--EeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCC----CceeeeeeccC
Q psy15421        238 GWAFATGSDDATCRLFDIRADQELA--MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM----KTERAGILAGH  311 (340)
Q Consensus       238 ~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~----~~~~~~~~~~h  311 (340)
                      ..+|||+|.|++.+|||+++.+...  .+..-.+.-+|.++.|||++-.|++-+.|..|+|||..    ..++...+ .|
T Consensus       335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~H  413 (498)
T KOG4328|consen  335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PH  413 (498)
T ss_pred             chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-ec
Confidence            4578999999999999998533222  12222333469999999998889999999999999973    33443333 34


Q ss_pred             C----cce--EEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        312 D----NRV--SCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       312 ~----~~i--~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .    .++  ....|.|+-++++.|-+-..|-|+|
T Consensus       414 n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  414 NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             cCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence            3    233  3468999999999987766665543

>KOG0270|consensus

Probab=99.90  E-value=9.3e-22  Score=165.56  Aligned_cols=275  Identities=21%  Similarity=0.359  Sum_probs=191.5

Q ss_pred             EEEEcCCCCeEEEEeCC---CeEEEEeCCCCCeeEEeeCCC-----CcEEEEEECC-------CCCEEEEEeCCCeEEEE
Q psy15421         60 AMHWGSDSRNLVSASQD---GKLIVWDSYTTNKVHAIPLRS-----SWVMTCAYAP-------SGSFVACGGLDNICSIY  124 (340)
Q Consensus        60 ~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~-----~~i~~v~~~~-------~~~~l~~~~~d~~v~i~  124 (340)
                      .+..-|.+++|+.+-.+   ..+.+|=.+...  ..+..|.     ...+|++|..       .|+|+|.|..|-.|.||
T Consensus       130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e--~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW  207 (463)
T KOG0270|consen  130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEE--ENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW  207 (463)
T ss_pred             cceeccCCcEEEEeeccCCceEEEEEEEcCCC--cceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence            44556767777666433   233344222222  1222222     2334555542       37899999999999999


Q ss_pred             EccCCCCce-----------------EEEEeecCCCcceEEEEEcC--CCeEEEEeCCCeEEEEECCCCceEEEEecCCC
Q psy15421        125 SLKTREGNV-----------------RVSRELPGHTGYLSCCRFLD--DNQIVTSSGDMSCALWDIETGQQCASFIGHTG  185 (340)
Q Consensus       125 ~~~~~~~~~-----------------~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~  185 (340)
                      |+.-.....                 +......+|+..|..+.|..  .+.|++|+.|.+|++||+.++++...+..|..
T Consensus       208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k  287 (463)
T KOG0270|consen  208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGK  287 (463)
T ss_pred             ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCC
Confidence            986432110                 00011236888887777754  35789999999999999999999999998999


Q ss_pred             CeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCee-eeEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCcCC-cEE
Q psy15421        186 DVMSLSLAPD-MRTFVSGACDASAKLWDIRDGSC-KQTFPGHESDINAVTFFPNG-WAFATGSDDATCRLFDIRAD-QEL  261 (340)
Q Consensus       186 ~v~~~~~~~~-~~~~~sg~~dg~i~~wd~~~~~~-~~~~~~h~~~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~~-~~~  261 (340)
                      .|.++.|+|. ...+++|+.|++|++.|.|...+ -..++ ..+.|..++|.|.. ..++++..||+++-+|+|+. +++
T Consensus       288 ~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~v  366 (463)
T KOG0270|consen  288 KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPV  366 (463)
T ss_pred             ceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCce
Confidence            9999999995 56889999999999999985322 22333 45678999999864 47888899999999999976 555


Q ss_pred             EEeecCCcccceEEEEEcCCCc-EEEEEeCCCcEEEEeCCCceeeeeeccCC---cceEEEEECCCCC-EEEEeeCCCcE
Q psy15421        262 AMYSHDNIICGITSVAFSRSGR-LLLAGYDDFNCNVWDSMKTERAGILAGHD---NRVSCLGVTEDGM-AVATGSWDSFL  336 (340)
Q Consensus       262 ~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~d~~i~iw~~~~~~~~~~~~~h~---~~i~~~~~s~d~~-~l~s~s~D~~i  336 (340)
                      ....  .+..+|.++++++.-+ ++++++.|+.+++|+...-.. +....|.   +...|.++.|+-. .|+.|+..+.+
T Consensus       367 wt~~--AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~  443 (463)
T KOG0270|consen  367 WTLK--AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVL  443 (463)
T ss_pred             eEEE--eccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccccccccceeecccCCCcceEEEecCccceE
Confidence            5442  3334789999987644 678899999999999754332 1122333   3456777777654 57778888899


Q ss_pred             EecC
Q psy15421        337 RIWN  340 (340)
Q Consensus       337 ~iW~  340 (340)
                      +|||
T Consensus       444 ~vwd  447 (463)
T KOG0270|consen  444 RVWD  447 (463)
T ss_pred             EEee
Confidence            9997

>KOG1009|consensus

Probab=99.90  E-value=3.3e-21  Score=160.58  Aligned_cols=279  Identities=19%  Similarity=0.278  Sum_probs=205.3

Q ss_pred             CcEEEEEEcCCCC-eEEEEeCCCeEEEEeCCCCC------e---eEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         56 AKIYAMHWGSDSR-NLVSASQDGKLIVWDSYTTN------K---VHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        56 ~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~------~---~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      .+|+.+.|.++.. .++||+.|..|+||-+....      .   ...+..|...|++|.|+|+|..||+|+.++.+.+|.
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK   93 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence            6899999998776 99999999999999764322      1   234567889999999999999999999999999998


Q ss_pred             cc--------C----CCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEE
Q psy15421        126 LK--------T----REGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSL  192 (340)
Q Consensus       126 ~~--------~----~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~  192 (340)
                      ..        +    ..+.+...+.+.+|...+.-++|.+++ .+++++.|.++++||+..|+....+..|...+..++|
T Consensus        94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvaw  173 (434)
T KOG1009|consen   94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAW  173 (434)
T ss_pred             ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeec
Confidence            65        1    022355666778899988888888765 5778999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCeeeeEec--------CCC--CC-------------eEEEEEecCCCEEEEEeC---
Q psy15421        193 APDMRTFVSGACDASAKLWDIRDGSCKQTFP--------GHE--SD-------------INAVTFFPNGWAFATGSD---  246 (340)
Q Consensus       193 ~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~--------~h~--~~-------------v~~v~~~~~~~~l~s~s~---  246 (340)
                      .|-.+++++-+.|...+.+.+.....++...        +++  ++             ...++|+|+|..+++.+.   
T Consensus       174 Dpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~  253 (434)
T KOG1009|consen  174 DPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFK  253 (434)
T ss_pred             chhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceee
Confidence            9999999999999988887765433222111        111  11             245788899988877532   


Q ss_pred             -CCc-----EEEEeCcCC-cEEEEeecCCcccceEEEEEc------------------CCCcEEEEEeCCCcEEEEeCCC
Q psy15421        247 -DAT-----CRLFDIRAD-QELAMYSHDNIICGITSVAFS------------------RSGRLLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       247 -d~~-----i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s------------------~~~~~l~~g~~d~~i~iw~~~~  301 (340)
                       .+.     -++|+-+.. ++...+.  ....+...+.|+                  |....+|.++.| .+++||..+
T Consensus       254 ~g~~~~~n~tYvfsrk~l~rP~~~lp--~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~  330 (434)
T KOG1009|consen  254 VGGGVFRNTSYVFSRKDLKRPAARLP--SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQT  330 (434)
T ss_pred             eCCceeeceeEeeccccccCceeecC--CCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEecccc
Confidence             122     244443211 1111111  111123333333                  344466777776 599999988


Q ss_pred             ceeeeeec-cCCcceEEEEECCCCCEEEEeeCCCcEE
Q psy15421        302 TERAGILA-GHDNRVSCLGVTEDGMAVATGSWDSFLR  337 (340)
Q Consensus       302 ~~~~~~~~-~h~~~i~~~~~s~d~~~l~s~s~D~~i~  337 (340)
                      .+++.... -|-.+|+.++|++||.+|+..|.||...
T Consensus       331 ~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS  367 (434)
T KOG1009|consen  331 LEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCS  367 (434)
T ss_pred             ccceEEEeeeeeeeecceeecCCCcEEEEeccCCceE
Confidence            88777654 4889999999999999999999999764

>KOG0321|consensus

Probab=99.89  E-value=1e-21  Score=172.00  Aligned_cols=252  Identities=17%  Similarity=0.296  Sum_probs=181.3

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEE--eeCCCCcEEEEEECCC-CCEEEEEeCCCeEEEEE
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHA--IPLRSSWVMTCAYAPS-GSFVACGGLDNICSIYS  125 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~~~-~~~l~~~~~d~~v~i~~  125 (340)
                      +.+..|...|.++.|.|-...|++++.|.++++||+.+......  ..+|...|.+++|.|. -..|++|+.|+.+.|||
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD  173 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD  173 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence            44568999999999999667899999999999999998887755  7799999999999985 46788999999999999


Q ss_pred             ccCCCCce-------------------EE----EEeecCCC----cceEEEEEcCCCeEEEEeC-CCeEEEEECCCCceE
Q psy15421        126 LKTREGNV-------------------RV----SRELPGHT----GYLSCCRFLDDNQIVTSSG-DMSCALWDIETGQQC  177 (340)
Q Consensus       126 ~~~~~~~~-------------------~~----~~~~~~~~----~~v~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~  177 (340)
                      ++....+.                   +.    .+.-.++.    +.|+.+.|.++..|++++. |+.|++||++.....
T Consensus       174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~  253 (720)
T KOG0321|consen  174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA  253 (720)
T ss_pred             EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence            87432000                   00    00011222    2355677778888998877 999999999876543


Q ss_pred             EE--------EecC---CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eeeEecCCCCC--eEEEEEecCCCEEE
Q psy15421        178 AS--------FIGH---TGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS--CKQTFPGHESD--INAVTFFPNGWAFA  242 (340)
Q Consensus       178 ~~--------~~~~---~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~--~~~~~~~h~~~--v~~v~~~~~~~~l~  242 (340)
                      ..        +..|   .-.+.++.....|.++++.+.|+.|.+|++..-.  .+..+.++...  -..-..+|++.+++
T Consensus       254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~  333 (720)
T KOG0321|consen  254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL  333 (720)
T ss_pred             cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence            32        1223   2246777777778888877789999999997643  34444444321  12234679999999


Q ss_pred             EEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCC--CcEEEEEeCCCcEEEEeCCCc
Q psy15421        243 TGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRS--GRLLLAGYDDFNCNVWDSMKT  302 (340)
Q Consensus       243 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~g~~d~~i~iw~~~~~  302 (340)
                      +|+.|...++|.+...+.-... ...+...|++++|.|.  .+.+ ++++|..+++|++..+
T Consensus       334 SgSsd~~ayiw~vs~~e~~~~~-l~Ght~eVt~V~w~pS~~t~v~-TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  334 SGSSDEQAYIWVVSSPEAPPAL-LLGHTREVTTVRWLPSATTPVA-TCSDDFRVKIWRLSNG  393 (720)
T ss_pred             ccCCCcceeeeeecCccCChhh-hhCcceEEEEEeeccccCCCce-eeccCcceEEEeccCc
Confidence            9999999999999865432111 1122335899999764  4554 5599999999997544

>KOG2096|consensus

Probab=99.89  E-value=3.6e-21  Score=155.85  Aligned_cols=244  Identities=17%  Similarity=0.246  Sum_probs=173.0

Q ss_pred             EEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCce-E-EEEeec-CCCcceEEEEEcCCC--eEEEEeCCCe
Q psy15421         91 HAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNV-R-VSRELP-GHTGYLSCCRFLDDN--QIVTSSGDMS  165 (340)
Q Consensus        91 ~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~-~~~~~~-~~~~~v~~~~~~~~~--~l~~~~~d~~  165 (340)
                      ..+++|...|++++|+.||++|++++.|+.|++|+++.-.... + +...++ .|..   .+.|.++.  .++++-...+
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT---~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT---RVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce---EEEECCCcceEEEEEccCCE
Confidence            4678999999999999999999999999999999987532210 0 001111 2443   34576664  4556667778


Q ss_pred             EEEEECCC---CceEE---------EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEE
Q psy15421        166 CALWDIET---GQQCA---------SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVT  233 (340)
Q Consensus       166 v~iwd~~~---~~~~~---------~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~  233 (340)
                      +++|-+..   |....         .-..|...+..+-...++.++++++.|-.|.+|+++ |+.+.++......-...+
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa  235 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA  235 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence            89887632   11111         112366677777788889999999999999999998 888888876666677789


Q ss_pred             EecCCCEEEEEeCCCcEEEEeCcC---C--c-EEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCC------
Q psy15421        234 FFPNGWAFATGSDDATCRLFDIRA---D--Q-ELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK------  301 (340)
Q Consensus       234 ~~~~~~~l~s~s~d~~i~iwd~~~---~--~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~------  301 (340)
                      ++|+|+++++++....+++|..--   +  + ....+...++...|..++|+|++..+++.+.||++++||..-      
T Consensus       236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q  315 (420)
T KOG2096|consen  236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ  315 (420)
T ss_pred             eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence            999999999999999999998531   1  1 112334456667899999999999999999999999999531      


Q ss_pred             -ceeeee----eccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        302 -TERAGI----LAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       302 -~~~~~~----~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                       .+.++.    +....+.---|+.||.|..|+.+ ....++++
T Consensus       316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~  357 (420)
T KOG2096|consen  316 DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVF  357 (420)
T ss_pred             CchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEE
Confidence             111111    11122233378999999877743 45566554

>KOG1188|consensus

Probab=99.89  E-value=3.2e-21  Score=157.44  Aligned_cols=271  Identities=16%  Similarity=0.249  Sum_probs=191.5

Q ss_pred             CeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECC--CCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCC-c
Q psy15421         68 RNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP--SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-G  144 (340)
Q Consensus        68 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~-~  144 (340)
                      ..++++-+.|+|+++|..+++.+..++++...+..++|..  ....+.+++.||+|++||++......++..+  +++ .
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~--~~~~~  118 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT--QQSGT  118 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc--CCCCC
Confidence            4688888999999999999999999999999888998876  4677889999999999999987655544332  344 2


Q ss_pred             ceEEEEEc-CCCeEEEEe----CCCeEEEEECCCCce-EEEE-ecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Q psy15421        145 YLSCCRFL-DDNQIVTSS----GDMSCALWDIETGQQ-CASF-IGHTGDVMSLSLAPD-MRTFVSGACDASAKLWDIRDG  216 (340)
Q Consensus       145 ~v~~~~~~-~~~~l~~~~----~d~~v~iwd~~~~~~-~~~~-~~~~~~v~~~~~~~~-~~~~~sg~~dg~i~~wd~~~~  216 (340)
                      +..++... ..+.+++|.    .+-.|.+||++..++ +..+ ..|.+.|++++|+|. -+.++|||.||.|.+||+...
T Consensus       119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            33333332 234455543    367899999998876 5444 469999999999995 468889999999999998654


Q ss_pred             e---eeeEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCcCCcEEEEeecCCccc----------ceEEEEEcCCC
Q psy15421        217 S---CKQTFPGHESDINAVTFFPNG-WAFATGSDDATCRLFDIRADQELAMYSHDNIIC----------GITSVAFSRSG  282 (340)
Q Consensus       217 ~---~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~----------~i~~~~~s~~~  282 (340)
                      .   .+...-.|...|.++.|..++ +.+.+-+...+..+|+++.+.+...+..+....          -+.......+.
T Consensus       199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~  278 (376)
T KOG1188|consen  199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDK  278 (376)
T ss_pred             cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCc
Confidence            2   122233477889999999876 458888889999999998765443332211100          01111112234


Q ss_pred             cEEEEEeC-CCcEEEEeCC---C---ceeeeeecc-CCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        283 RLLLAGYD-DFNCNVWDSM---K---TERAGILAG-HDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       283 ~~l~~g~~-d~~i~iw~~~---~---~~~~~~~~~-h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ...+.++. -++..++-+.   +   ...+..+.+ |..-|.++.|...+.++.||+.||.+.+|.
T Consensus       279 ~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  279 DTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             ceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence            44554444 5556655432   2   223445555 778888999998899999999999999994

>KOG1517|consensus

Probab=99.88  E-value=2e-20  Score=172.40  Aligned_cols=287  Identities=16%  Similarity=0.243  Sum_probs=205.5

Q ss_pred             ecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCC---CcEEEEEECC--CCCEEEEEeCCCeEEEEE
Q psy15421         51 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRS---SWVMTCAYAP--SGSFVACGGLDNICSIYS  125 (340)
Q Consensus        51 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~i~~v~~~~--~~~~l~~~~~d~~v~i~~  125 (340)
                      +.+-..+-..+.|+|-.+.++++...-+|++||.+.++....+..+.   ..|+.+.+-.  |..++++|+.||.||||+
T Consensus      1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred             HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence            34444455677888988899998888899999999888876665433   4566666653  567899999999999997


Q ss_pred             ccCCC-CceEEEEeecC---C----CcceEEEEEc-CCCeEEEEeCCCeEEEEECCCCceEEEEec-CCCCeEEEEEc-C
Q psy15421        126 LKTRE-GNVRVSRELPG---H----TGYLSCCRFL-DDNQIVTSSGDMSCALWDIETGQQCASFIG-HTGDVMSLSLA-P  194 (340)
Q Consensus       126 ~~~~~-~~~~~~~~~~~---~----~~~v~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~-~  194 (340)
                      -.... ++.++.....+   +    .+.-..+.|. ..+.|++++.-..|+|||....+.+..+.. ....++++.-+ +
T Consensus      1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred             ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence            54322 33333222111   1    1111123343 346788777789999999988776655543 23335555443 3


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCe---eeeEecCCCCC--eEEEEEecCCC-EEEEEeCCCcEEEEeCcCCcEEEEe---e
Q psy15421        195 DMRTFVSGACDASAKLWDIRDGS---CKQTFPGHESD--INAVTFFPNGW-AFATGSDDATCRLFDIRADQELAMY---S  265 (340)
Q Consensus       195 ~~~~~~sg~~dg~i~~wd~~~~~---~~~~~~~h~~~--v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~---~  265 (340)
                      .++.++.|..||.|++||.+...   .+..++.|...  |..+.+.+.|- .+++|+.||.|++||++.......+   .
T Consensus      1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred             CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence            46899999999999999988643   45677888876  99999998765 4999999999999999974222211   2


Q ss_pred             cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccC-------CcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        266 HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGH-------DNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       266 ~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h-------~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      +......++++..|++..++|+|+. +.|+||++ .++.+..+..+       .+.+.|++|+|-..+||.|+.|.+|.|
T Consensus      1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred             ccccCccceeeeeccCCCeeeecCc-ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEE
Confidence            2222334899999999999999999 89999995 45555444433       456799999999999999999999998


Q ss_pred             c
Q psy15421        339 W  339 (340)
Q Consensus       339 W  339 (340)
                      +
T Consensus      1378 Y 1378 (1387)
T KOG1517|consen 1378 Y 1378 (1387)
T ss_pred             e
Confidence            7

>KOG4227|consensus

Probab=99.88  E-value=1.7e-20  Score=155.98  Aligned_cols=290  Identities=14%  Similarity=0.224  Sum_probs=212.5

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCC------CCeeEEee-CCCCcEEEEEECCCCCEEEEEeCCCe
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYT------TNKVHAIP-LRSSWVMTCAYAPSGSFVACGGLDNI  120 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~-~~~~~i~~v~~~~~~~~l~~~~~d~~  120 (340)
                      ++.+.+|.+.|.++.|+.++++|++|+.|..+++|++..      .+.+.... .|.+.|.+++|.....++++|+.+++
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            456889999999999999999999999999999999753      23333322 34478999999999999999999999


Q ss_pred             EEEEEccCCCCceEEEEeecCCCcceEEEEEcC-CCeEEEEeCCCeEEEEECCCCc-eE--EEEecCCCCeEEEEEcCCC
Q psy15421        121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD-DNQIVTSSGDMSCALWDIETGQ-QC--ASFIGHTGDVMSLSLAPDM  196 (340)
Q Consensus       121 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~-~~--~~~~~~~~~v~~~~~~~~~  196 (340)
                      |..-|+.+.+....  ..-....+.|..+.-++ ++.|++.+.++.|.+||.+..+ ..  ...........++-|+|..
T Consensus       129 VI~HDiEt~qsi~V--~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  129 VIKHDIETKQSIYV--ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             eEeeecccceeeee--ecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            99999976542211  11112234666655544 5788899999999999998655 22  1222334457788899965


Q ss_pred             C-EEEEEeCCCcEEEEECCCCee-e------eEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcE-EEEeecC
Q psy15421        197 R-TFVSGACDASAKLWDIRDGSC-K------QTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQE-LAMYSHD  267 (340)
Q Consensus       197 ~-~~~sg~~dg~i~~wd~~~~~~-~------~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~  267 (340)
                      . ++++.+..+-+-+||.+..+. +      ..++.....-.++-|+|.|..|.+--.-..-.+||+.+.++ +..+.|.
T Consensus       207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N  286 (609)
T KOG4227|consen  207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN  286 (609)
T ss_pred             ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence            4 677888899999999986542 1      12222122235788999999999887777778889876443 3334332


Q ss_pred             C----cccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc-----------------------eeeeeeccCCcceEEEEE
Q psy15421        268 N----IICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT-----------------------ERAGILAGHDNRVSCLGV  320 (340)
Q Consensus       268 ~----~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~-----------------------~~~~~~~~h~~~i~~~~~  320 (340)
                      .    ..+.+.+++|-.| ..+++|+++..|++|.+...                       +.+..+.||..-++.|.|
T Consensus       287 ~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF  365 (609)
T KOG4227|consen  287 PNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF  365 (609)
T ss_pred             CCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee
Confidence            2    1345778888765 44999999999999975310                       123457899999999999


Q ss_pred             CCCCCEEEEeeCCCcEEecC
Q psy15421        321 TEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       321 s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +|-..+|+|.+....++||.
T Consensus       366 ~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  366 SQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             cCCcceEeccchhhheeccc
Confidence            99999999999999999994

>KOG2055|consensus

Probab=99.88  E-value=4.6e-21  Score=162.10  Aligned_cols=231  Identities=15%  Similarity=0.215  Sum_probs=187.4

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC--eEEEEeCCCeEEEEECCCCc
Q psy15421         98 SWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN--QIVTSSGDMSCALWDIETGQ  175 (340)
Q Consensus        98 ~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~  175 (340)
                      +.|.++.|+|....|++++.|++++||.+......  ....+.-...++.++.|.+++  .+++++.-..+..||+.+.+
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            56999999999999999999999999999653322  222333345678888888775  47777788899999998876


Q ss_pred             eE--EEEecCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q psy15421        176 QC--ASFIGHTG-DVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRL  252 (340)
Q Consensus       176 ~~--~~~~~~~~-~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~i  252 (340)
                      ..  ....++.. .+-...++|++++++..+..|.|.+....+++.+.+++ -++.|..++|+.+++.+++++.+|.|.+
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV  370 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence            43  33344442 35567789999999999999999999999999888887 4678999999999999999999999999


Q ss_pred             EeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCC------CceeeeeeccCCcceEEEEECCCCCE
Q psy15421        253 FDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM------KTERAGILAGHDNRVSCLGVTEDGMA  326 (340)
Q Consensus       253 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~------~~~~~~~~~~h~~~i~~~~~s~d~~~  326 (340)
                      ||+++...+..+...+-.+ -++++.++++.+||+|++.|.|.|||..      +.+++..+..-...|+++.|++|++.
T Consensus       371 ~nl~~~~~~~rf~D~G~v~-gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi  449 (514)
T KOG2055|consen  371 WNLRQNSCLHRFVDDGSVH-GTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQI  449 (514)
T ss_pred             EecCCcceEEEEeecCccc-eeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence            9999988887776555433 4678889999999999999999999943      34566777777789999999999999


Q ss_pred             EEEeeC
Q psy15421        327 VATGSW  332 (340)
Q Consensus       327 l~s~s~  332 (340)
                      ||.+|.
T Consensus       450 LAiaS~  455 (514)
T KOG2055|consen  450 LAIASR  455 (514)
T ss_pred             hhhhhh
Confidence            887775

>KOG1007|consensus

Probab=99.87  E-value=2.1e-20  Score=149.49  Aligned_cols=272  Identities=18%  Similarity=0.262  Sum_probs=185.4

Q ss_pred             EEecCccCcEEEEEEcCCCCe-EEEEeCC-------CeEEEEeCCCCC---------eeEEee-CCCCcEEEEEECCCCC
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRN-LVSASQD-------GKLIVWDSYTTN---------KVHAIP-LRSSWVMTCAYAPSGS  110 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~-l~s~~~d-------~~i~iwd~~~~~---------~~~~~~-~~~~~i~~v~~~~~~~  110 (340)
                      +.|.-|.++|+.++-+|.++. |+|+-.|       ..+-||.+....         .+..+. .+-+.|.|+.|.|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            567888999999999996654 5555442       346799874322         222232 2335789999999999


Q ss_pred             EEEEEeCCCeEEEEEccCCCCce-EEEEe-ecCCCcceEEEEEcC--CCeEEEEeCCCeEEEEECCCCceEEEEe-cCCC
Q psy15421        111 FVACGGLDNICSIYSLKTREGNV-RVSRE-LPGHTGYLSCCRFLD--DNQIVTSSGDMSCALWDIETGQQCASFI-GHTG  185 (340)
Q Consensus       111 ~l~~~~~d~~v~i~~~~~~~~~~-~~~~~-~~~~~~~v~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~  185 (340)
                      .+++-. |+.|.+|++....... .+... -..+....+.-.|++  ++.-++..+|+++..||+++.+....+. +|..
T Consensus       137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq  215 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQ  215 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcc
Confidence            988766 7889999997654321 11111 112334455556654  4455666789999999999887665554 5878


Q ss_pred             CeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe-eeeEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCCc--E
Q psy15421        186 DVMSLSLAPDMR-TFVSGACDASAKLWDIRDGS-CKQTFPGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQ--E  260 (340)
Q Consensus       186 ~v~~~~~~~~~~-~~~sg~~dg~i~~wd~~~~~-~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~--~  260 (340)
                      .|..+.|+|+.+ ++++|+.||.|++||.|.-+ +++++++|...|++|.|.|. ...+++||.|..|.+|....-.  +
T Consensus       216 ~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~  295 (370)
T KOG1007|consen  216 RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ  295 (370)
T ss_pred             eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence            899999999977 56789999999999998654 67889999999999999996 5678899999999999865321  1


Q ss_pred             EEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCC-CCEEEEeeCCCcEEe
Q psy15421        261 LAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTED-GMAVATGSWDSFLRI  338 (340)
Q Consensus       261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d-~~~l~s~s~D~~i~i  338 (340)
                      ...+.++....        ++        .|..=++= ......+.++..|++.|++++||.- .=.+||=|.||.+.|
T Consensus       296 qi~~~~dese~--------e~--------~dseer~k-pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  296 QIEFEDDESES--------ED--------EDSEERVK-PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII  357 (370)
T ss_pred             ccccccccccC--------cc--------hhhHHhcc-cccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence            11111111000        00        11000000 1112235567899999999999874 446789999999876

>KOG0307|consensus

Probab=99.87  E-value=1.1e-21  Score=182.38  Aligned_cols=278  Identities=20%  Similarity=0.281  Sum_probs=206.5

Q ss_pred             EEEEEcCCCC-eEEEE----------eCCCeEEEEeCC--CCC----eeEEeeCCCCcEEEEEECCCCCE----EEEEeC
Q psy15421         59 YAMHWGSDSR-NLVSA----------SQDGKLIVWDSY--TTN----KVHAIPLRSSWVMTCAYAPSGSF----VACGGL  117 (340)
Q Consensus        59 ~~~~~s~~~~-~l~s~----------~~d~~i~iwd~~--~~~----~~~~~~~~~~~i~~v~~~~~~~~----l~~~~~  117 (340)
                      -.++|+|+++ ++++|          +.+.++-||.+.  +..    ....+.. ....+.++|.+.+..    ++.|..
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s-~~rF~kL~W~~~g~~~~GlIaGG~e   88 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS-SNRFNKLAWGSYGSHSHGLIAGGLE   88 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccc-cccceeeeecccCCCccceeecccc
Confidence            3567888876 44444          334556666432  221    1111211 234678889987765    888999


Q ss_pred             CCeEEEEEccCC--CCceEEEEeecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCceEEEE--ecCCCCeEEEE
Q psy15421        118 DNICSIYSLKTR--EGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQCASF--IGHTGDVMSLS  191 (340)
Q Consensus       118 d~~v~i~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~~v~~~~  191 (340)
                      ||.|-+|+...-  ............|.+.|..+.|+..  +.+++|++||.|.|||+..-+.-...  ....+.|.+++
T Consensus        89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls  168 (1049)
T KOG0307|consen   89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS  168 (1049)
T ss_pred             CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence            999999998652  3333344566789999999999753  47889999999999999875433322  22456799999


Q ss_pred             EcCC-CCEEEEEeCCCcEEEEECCCCeeeeEecCCCC--CeEEEEEecCC-CEEEEEeCCC---cEEEEeCcCC-cEEEE
Q psy15421        192 LAPD-MRTFVSGACDASAKLWDIRDGSCKQTFPGHES--DINAVTFFPNG-WAFATGSDDA---TCRLFDIRAD-QELAM  263 (340)
Q Consensus       192 ~~~~-~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~--~v~~v~~~~~~-~~l~s~s~d~---~i~iwd~~~~-~~~~~  263 (340)
                      |+.. ...|++++.+|.+.+||++..+.+-.+..+..  .+..++|+|+. ..+++++.|.   .|.+||+|.. .++..
T Consensus       169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~  248 (1049)
T KOG0307|consen  169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI  248 (1049)
T ss_pred             cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence            9875 44677899999999999998877766655544  36789999984 5677776654   4899999853 34444


Q ss_pred             eecCCcccceEEEEEcCCC-cEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCC-CEEEEeeCCCcEEec
Q psy15421        264 YSHDNIICGITSVAFSRSG-RLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDG-MAVATGSWDSFLRIW  339 (340)
Q Consensus       264 ~~~~~~~~~i~~~~~s~~~-~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~-~~l~s~s~D~~i~iW  339 (340)
                      +  ..+..+|.++.|++.+ ++|++++.|+.|.+|+.+++|.+..+....+++..+.|.|.. ..++.+|.||.|-|+
T Consensus       249 ~--~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~  324 (1049)
T KOG0307|consen  249 L--EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY  324 (1049)
T ss_pred             h--cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence            4  2344579999999876 899999999999999999999999998888999999999965 488899999999886

>KOG0649|consensus

Probab=99.86  E-value=8.7e-19  Score=137.17  Aligned_cols=270  Identities=15%  Similarity=0.193  Sum_probs=189.2

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCeEEEEeCCC---------C-CeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         57 KIYAMHWGSDSRNLVSASQDGKLIVWDSYT---------T-NKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~---------~-~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      .|++-+|+|.+++|++|..+|+|.+..+.+         + ..+...++|+.+++.++|.  ..+|++|+ ||.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence            456678899999999999999999997642         2 2345568999999999998  45666655 499999988


Q ss_pred             cCCCCce----EEEEeecCCC-----cceEEEEEcC-CCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCC
Q psy15421        127 KTREGNV----RVSRELPGHT-----GYLSCCRFLD-DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDM  196 (340)
Q Consensus       127 ~~~~~~~----~~~~~~~~~~-----~~v~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  196 (340)
                      +......    .+....|-|.     ..++++...+ .+-++++++|+.+.-||+++|+....+.+|++.+-++..-...
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~  168 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN  168 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence            7543311    1112223333     2456665543 3567777799999999999999999999999999999985555


Q ss_pred             CEEEEEeCCCcEEEEECCCCeeeeEecC---------CC-CCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeec
Q psy15421        197 RTFVSGACDASAKLWDIRDGSCKQTFPG---------HE-SDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSH  266 (340)
Q Consensus       197 ~~~~sg~~dg~i~~wd~~~~~~~~~~~~---------h~-~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  266 (340)
                      ..+++|+.||++|+||.++++++..+..         |- ..|-+++.+.  ..+++|+ -..+.+|.++...+...++.
T Consensus       169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e--dWlvCGg-Gp~lslwhLrsse~t~vfpi  245 (325)
T KOG0649|consen  169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--DWLVCGG-GPKLSLWHLRSSESTCVFPI  245 (325)
T ss_pred             cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--ceEEecC-CCceeEEeccCCCceEEEec
Confidence            6788999999999999999988776532         22 2355666553  4666665 57899999998888877765


Q ss_pred             CCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEE-EeeCCCcEEe
Q psy15421        267 DNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVA-TGSWDSFLRI  338 (340)
Q Consensus       267 ~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~-s~s~D~~i~i  338 (340)
                      +..   +.-+.|..  ..+++++..+.+.-|.. ++........-.-..++.+++...-.++ .++....+.|
T Consensus       246 pa~---v~~v~F~~--d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i  312 (325)
T KOG0649|consen  246 PAR---VHLVDFVD--DCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHI  312 (325)
T ss_pred             ccc---eeEeeeec--ceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeee
Confidence            543   56667754  46677777778999974 5655555544444556666654443333 3444444443

>KOG0307|consensus

Probab=99.86  E-value=9.7e-21  Score=176.10  Aligned_cols=244  Identities=16%  Similarity=0.304  Sum_probs=193.6

Q ss_pred             CcEEEEEEcCCCCe----EEEEeCCCeEEEEeCCCC------CeeEEeeCCCCcEEEEEECCC-CCEEEEEeCCCeEEEE
Q psy15421         56 AKIYAMHWGSDSRN----LVSASQDGKLIVWDSYTT------NKVHAIPLRSSWVMTCAYAPS-GSFVACGGLDNICSIY  124 (340)
Q Consensus        56 ~~v~~~~~s~~~~~----l~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~i~~v~~~~~-~~~l~~~~~d~~v~i~  124 (340)
                      .+.+.++|.+.+..    |+.|..||.|.+||....      ..+.+...|.+.|..+.|.+. ++.||+|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            46788999988776    888889999999997652      234566789999999999986 5599999999999999


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCceEEEEecCCC--CeEEEEEcCCCC-EE
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQCASFIGHTG--DVMSLSLAPDMR-TF  199 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~-~~  199 (340)
                      |+...+......  -......|.++.|+..  ..|++++.++.+.|||++..+.+..+..+.+  .+..++|+|+.. .+
T Consensus       145 Dlnn~~tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql  222 (1049)
T KOG0307|consen  145 DLNKPETPFTPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL  222 (1049)
T ss_pred             ccCCcCCCCCCC--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence            998755433221  1224567888999754  3577888899999999999887777766554  477999999753 56


Q ss_pred             EEEeCC---CcEEEEECCCC-eeeeEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceE
Q psy15421        200 VSGACD---ASAKLWDIRDG-SCKQTFPGHESDINAVTFFPNG-WAFATGSDDATCRLFDIRADQELAMYSHDNIICGIT  274 (340)
Q Consensus       200 ~sg~~d---g~i~~wd~~~~-~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~  274 (340)
                      ++++.|   -.|.+||+|.- ...+.+++|...|.++.|++.+ .+++|++.|+.|..|+.++++.+..+....  ....
T Consensus       223 ~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~--nW~f  300 (1049)
T KOG0307|consen  223 LVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG--NWCF  300 (1049)
T ss_pred             eeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC--ccee
Confidence            666654   46899999864 3567889999999999999966 889999999999999999988888775532  3477


Q ss_pred             EEEEcCCCc-EEEEEeCCCcEEEEeCCCce
Q psy15421        275 SVAFSRSGR-LLLAGYDDFNCNVWDSMKTE  303 (340)
Q Consensus       275 ~~~~s~~~~-~l~~g~~d~~i~iw~~~~~~  303 (340)
                      .+.|+|... .+++++-||.|.||.+....
T Consensus       301 dv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  301 DVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eeeecCCCcchhhhheeccceeeeeeecCC
Confidence            899999877 88889999999999976543

>KOG1240|consensus

Probab=99.85  E-value=1.3e-18  Score=162.77  Aligned_cols=299  Identities=16%  Similarity=0.187  Sum_probs=205.9

Q ss_pred             ceeeEEeEEecCccCcEEEEEEcCCC-CeEEEEeCCCeEEEEeCCCC-------CeeEEeeCCCCcEEEEEECCCCCEEE
Q psy15421         42 RIQMRTRRTLRGHLAKIYAMHWGSDS-RNLVSASQDGKLIVWDSYTT-------NKVHAIPLRSSWVMTCAYAPSGSFVA  113 (340)
Q Consensus        42 ~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~i~~v~~~~~~~~l~  113 (340)
                      ++.-.....|..|...|..++.+++. .+++|||.||+|++||...-       +...+.......+.++..-+.+..+|
T Consensus      1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred             CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence            44445566788999999999988765 99999999999999997532       12334444567788899999999999


Q ss_pred             EEeCCCeEEEEEccCCCCce---EEEEeec--CCCcceEEEEEc--CCC-eEEEEeCCCeEEEEECCCCceEEEEe--cC
Q psy15421        114 CGGLDNICSIYSLKTREGNV---RVSRELP--GHTGYLSCCRFL--DDN-QIVTSSGDMSCALWDIETGQQCASFI--GH  183 (340)
Q Consensus       114 ~~~~d~~v~i~~~~~~~~~~---~~~~~~~--~~~~~v~~~~~~--~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~--~~  183 (340)
                      +++.||.|++..+.......   ...+...  .....|....|.  ... .++.+..-+.|..||++......+++  ..
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence            99999999999987522111   1111111  122234444443  223 56777788999999998765444333  34


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEec-CCCCCeEEEEEecCC---CEEEEE-e-CCCcEEEEeCcC
Q psy15421        184 TGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP-GHESDINAVTFFPNG---WAFATG-S-DDATCRLFDIRA  257 (340)
Q Consensus       184 ~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~-~h~~~v~~v~~~~~~---~~l~s~-s-~d~~i~iwd~~~  257 (340)
                      .+.|++++.+|.+..+++|...|.+.+||+|=+.++.+++ ++..+++-+..+|-.   ...+++ + ..+.|.+|++.+
T Consensus      1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred             ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence            5679999999999999999999999999999888777764 334678888777642   344444 4 578899999987


Q ss_pred             CcEEEEeecC-----------------CcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceee---------------
Q psy15421        258 DQELAMYSHD-----------------NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERA---------------  305 (340)
Q Consensus       258 ~~~~~~~~~~-----------------~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~---------------  305 (340)
                      +.....+-..                 ..........+...+.++.+|+.|..|+.||....+.-               
T Consensus      1275 g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~ 1354 (1431)
T KOG1240|consen 1275 GLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNS 1354 (1431)
T ss_pred             CcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccc
Confidence            6543332111                 00011223445555778999999999999984321110               


Q ss_pred             ---------------------------------ee--------eccCCcceEEEEECCC-CCEEEEeeCCCcEEecC
Q psy15421        306 ---------------------------------GI--------LAGHDNRVSCLGVTED-GMAVATGSWDSFLRIWN  340 (340)
Q Consensus       306 ---------------------------------~~--------~~~h~~~i~~~~~s~d-~~~l~s~s~D~~i~iW~  340 (340)
                                                       ..        -..|..+|+++++-.. ..+|++++.||.|+||.
T Consensus      1355 ~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1355 ESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             hhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence                                             00        1246678888877554 45899999999999995

>KOG0303|consensus

Probab=99.85  E-value=1.9e-19  Score=149.76  Aligned_cols=211  Identities=18%  Similarity=0.273  Sum_probs=165.5

Q ss_pred             EeeCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEccCCCCce---EEEEeecCCCcceEEEEEcC--CCeEEEEeCCCe
Q psy15421         92 AIPLRSSWVMTCAYAP-SGSFVACGGLDNICSIYSLKTREGNV---RVSRELPGHTGYLSCCRFLD--DNQIVTSSGDMS  165 (340)
Q Consensus        92 ~~~~~~~~i~~v~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~  165 (340)
                      .+.+|..+|..++|.| +...+|+|+.|-+|.||.+.......   .....+.+|...|..+.|++  .+.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4568899999999998 57789999999999999997643221   23456789999999999976  467999999999


Q ss_pred             EEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCC-eEEEEEecCCCEEEEE
Q psy15421        166 CALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESD-INAVTFFPNGWAFATG  244 (340)
Q Consensus       166 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~-v~~v~~~~~~~~l~s~  244 (340)
                      |.+|++.+|+.+..+. |.+-|.++.|+.||.+++|.+.|..||+||.++++.+..-.+|.+. -.-+.|-.++..+.||
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG  234 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG  234 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence            9999999999887776 9999999999999999999999999999999999988887788763 3455677788855555


Q ss_pred             ---eCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEE-EEEeCCCcEEEEeCCCce
Q psy15421        245 ---SDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLL-LAGYDDFNCNVWDSMKTE  303 (340)
Q Consensus       245 ---s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~g~~d~~i~iw~~~~~~  303 (340)
                         .++..+-+||-.+......+.......+|.---|.||.+++ ++|-.|+.||+|+.....
T Consensus       235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence               34678999997654322222111222356666778887765 467789999999976554

>KOG1334|consensus

Probab=99.84  E-value=3e-20  Score=158.31  Aligned_cols=295  Identities=18%  Similarity=0.296  Sum_probs=222.1

Q ss_pred             eeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEe-eCCCCcEEEEEECCC--CCEEEEEeCCCe
Q psy15421         44 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAI-PLRSSWVMTCAYAPS--GSFVACGGLDNI  120 (340)
Q Consensus        44 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~i~~v~~~~~--~~~l~~~~~d~~  120 (340)
                      +++....|.+|.+.|..+.|+..|..|+|||.|..|.+||...++.+..+ .+|...|.-..|-|.  ..-+++++.||.
T Consensus       131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence            44556778999999999999999999999999999999999887766544 578777777777774  567899999999


Q ss_pred             EEEEEccCCCCceEEEEeecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCceEEEEe---cCCC---CeEEEEE
Q psy15421        121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQCASFI---GHTG---DVMSLSL  192 (340)
Q Consensus       121 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~---~v~~~~~  192 (340)
                      +++-.+...... .-...+..|.+.+..+...++  ..|.+++.|+.+.-.|++.+.+...+.   .+..   ...+++.
T Consensus       211 vr~s~i~~t~~~-e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~  289 (559)
T KOG1334|consen  211 VRVSEILETGYV-ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV  289 (559)
T ss_pred             eeeeeeccccce-ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence            998877653322 223345568888877766544  469999999999999998876543332   2333   4678888


Q ss_pred             cCCCC-EEEEEeCCCcEEEEECCCCee------eeEecC-C-----CCCeEEEEEecCCCEEEEEeCCCcEEEEeCc--C
Q psy15421        193 APDMR-TFVSGACDASAKLWDIRDGSC------KQTFPG-H-----ESDINAVTFFPNGWAFATGSDDATCRLFDIR--A  257 (340)
Q Consensus       193 ~~~~~-~~~sg~~dg~i~~wd~~~~~~------~~~~~~-h-----~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~--~  257 (340)
                      .|... .+++|+.|..+++||.+.-..      +..+-. |     .-.|++++|+.++.-+.++..|-.|+++.-.  .
T Consensus       290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~  369 (559)
T KOG1334|consen  290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD  369 (559)
T ss_pred             CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence            88654 788999999999999865321      122211 1     2358999999887777777789999999532  1


Q ss_pred             C----------cEEEE--eecCCcccceEEEEE-cCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCC
Q psy15421        258 D----------QELAM--YSHDNIICGITSVAF-SRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDG  324 (340)
Q Consensus       258 ~----------~~~~~--~~~~~~~~~i~~~~~-s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~  324 (340)
                      +          +.+..  .+|.+... |..+-| -|...|+++|++-|.|.||+..+++.+..|.+...-|+||.=+|-=
T Consensus       370 G~~p~~~s~~~~~~k~vYKGHrN~~T-VKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~  448 (559)
T KOG1334|consen  370 GSEPDPSSPREQYVKRVYKGHRNSRT-VKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL  448 (559)
T ss_pred             CCCCCCCcchhhccchhhcccccccc-cceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC
Confidence            1          11111  23333322 555555 6889999999999999999999999888888877799999999988


Q ss_pred             CEEEEeeCCCcEEecC
Q psy15421        325 MAVATGSWDSFLRIWN  340 (340)
Q Consensus       325 ~~l~s~s~D~~i~iW~  340 (340)
                      ..|||++.|.-|+||-
T Consensus       449 PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  449 PVLASSGIDHDVKIWT  464 (559)
T ss_pred             chhhccCCccceeeec
Confidence            8999999999999993

>KOG4378|consensus

Probab=99.84  E-value=2.3e-19  Score=153.29  Aligned_cols=263  Identities=15%  Similarity=0.171  Sum_probs=188.8

Q ss_pred             eCCCeEEEEeCCCCCeeEEeeCC--CCcEEEEEECCCCC-EEEEEeCCCeEEEEEccCCCCceEEEEeecCCCc-ceEEE
Q psy15421         74 SQDGKLIVWDSYTTNKVHAIPLR--SSWVMTCAYAPSGS-FVACGGLDNICSIYSLKTREGNVRVSRELPGHTG-YLSCC  149 (340)
Q Consensus        74 ~~d~~i~iwd~~~~~~~~~~~~~--~~~i~~v~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~-~v~~~  149 (340)
                      +...+++|||.......-.+..|  ...+.++.|..... ..++-+.|+.+++|.-....+.+...+...+... .|.+.
T Consensus         9 S~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~   88 (673)
T KOG4378|consen    9 STGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACA   88 (673)
T ss_pred             ccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhh
Confidence            33347999998654433222222  22377888887654 3344567788999975433222323333333322 12222


Q ss_pred             EEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCC-CCC
Q psy15421        150 RFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGH-ESD  228 (340)
Q Consensus       150 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h-~~~  228 (340)
                      .  ..-++++|+..+.|+|||++.....+.+..|.+.|++|.++-...++++++..|.|.+-.+.++.....|... ...
T Consensus        89 s--~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqs  166 (673)
T KOG4378|consen   89 S--QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQS  166 (673)
T ss_pred             h--cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCe
Confidence            2  2246888999999999999965556677889999999999999999999999999999999888766666533 345


Q ss_pred             eEEEEEecCCC-EEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCc-EEEEEeCCCcEEEEeCCCceeee
Q psy15421        229 INAVTFFPNGW-AFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR-LLLAGYDDFNCNVWDSMKTERAG  306 (340)
Q Consensus       229 v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~d~~i~iw~~~~~~~~~  306 (340)
                      |.-+.|+|..+ .|.+++.+|.|.+||+....+...+. ..+..+-..++|+|... +|++-+-|..|.+||........
T Consensus       167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~-~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~  245 (673)
T KOG4378|consen  167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS-EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD  245 (673)
T ss_pred             EEEeecccccceeeEeeccCCeEEEEeccCCCcccchh-hhccCCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence            67899999766 46688999999999998766654332 23334556789999754 66778899999999988766655


Q ss_pred             eeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        307 ILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       307 ~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .+. .+.+.+.|+|+++|.+|+.|+..|.|..||
T Consensus       246 ~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD  278 (673)
T KOG4378|consen  246 RLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYD  278 (673)
T ss_pred             eee-ecCCcceeeecCCceEEEeecCCceEEEEe
Confidence            553 467899999999999999999999998775

>KOG2919|consensus

Probab=99.84  E-value=3.3e-19  Score=144.82  Aligned_cols=234  Identities=19%  Similarity=0.334  Sum_probs=176.9

Q ss_pred             CcEEEEEEc-------CCCCeEEEEeCCCeEEEEeCCCCCeeEEeeC--CC---CcEEEEEECCCCCEEEEEeCCCeEEE
Q psy15421         56 AKIYAMHWG-------SDSRNLVSASQDGKLIVWDSYTTNKVHAIPL--RS---SWVMTCAYAPSGSFVACGGLDNICSI  123 (340)
Q Consensus        56 ~~v~~~~~s-------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~---~~i~~v~~~~~~~~l~~~~~d~~v~i  123 (340)
                      .-|+..+|-       |+..++++.+.|.-|++||..+++....+.+  |.   .+..++.|+|||.+|++ +..+.|++
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-Gykrcirv  183 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRV  183 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEE
Confidence            457777773       6778899999999999999999987655542  22   24568999999999985 55778999


Q ss_pred             EEccCCCCceEEEEe----ecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC
Q psy15421        124 YSLKTREGNVRVSRE----LPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR  197 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  197 (340)
                      +++.........-.+    -.+..+.+.++.|++-  +.++.++....+-||.-..+.++..+.+|.+.|+.++|+++|+
T Consensus       184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn  263 (406)
T KOG2919|consen  184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN  263 (406)
T ss_pred             eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC
Confidence            999543333221111    1234667888888764  4677888889999999888889999999999999999999999


Q ss_pred             EEEEEeC-CCcEEEEECCCC-eeeeEecCCCCCeE-E--EEEecCCCEEEEEeCCCcEEEEeCcC-CcEEEEeecCCccc
Q psy15421        198 TFVSGAC-DASAKLWDIRDG-SCKQTFPGHESDIN-A--VTFFPNGWAFATGSDDATCRLFDIRA-DQELAMYSHDNIIC  271 (340)
Q Consensus       198 ~~~sg~~-dg~i~~wd~~~~-~~~~~~~~h~~~v~-~--v~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~~  271 (340)
                      .|++|+. |-.|..||+|.. .++..+..|-+..+ .  ....|+++.|++|+.||.|++||++. +..+..+.  ....
T Consensus       264 ~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~--~~sd  341 (406)
T KOG2919|consen  264 KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG--NYSD  341 (406)
T ss_pred             eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc--cccc
Confidence            9999885 899999999864 34556666765322 2  34458899999999999999999987 33343332  2223


Q ss_pred             ceEEEEEcCCCcEEEEEeCCC
Q psy15421        272 GITSVAFSRSGRLLLAGYDDF  292 (340)
Q Consensus       272 ~i~~~~~s~~~~~l~~g~~d~  292 (340)
                      -++.++++|--.++++++...
T Consensus       342 ~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  342 TVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             cccceecCcccceeeeccCce
Confidence            488999999999999888764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.84  E-value=1.5e-17  Score=145.90  Aligned_cols=266  Identities=11%  Similarity=0.174  Sum_probs=170.1

Q ss_pred             EEEEeCCCeEEEEeCCC-CC--eeEEeeCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEccCCCCceEEEEeecCCCcc
Q psy15421         70 LVSASQDGKLIVWDSYT-TN--KVHAIPLRSSWVMTCAYAPSGSFVACGG-LDNICSIYSLKTREGNVRVSRELPGHTGY  145 (340)
Q Consensus        70 l~s~~~d~~i~iwd~~~-~~--~~~~~~~~~~~i~~v~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~  145 (340)
                      +++...|+.|++|++.+ ++  .+..++. ......++++|++++|++++ .++.+.+|++. ..+........+ ....
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~~~~~~~-~~~~   81 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALTFAAESP-LPGS   81 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceEEeeeec-CCCC
Confidence            44557799999999964 33  3344432 34466789999999987765 47888999986 233332222222 1222


Q ss_pred             eEEEEEcCCCe-EEEEe-CCCeEEEEECCCCc----eEEEEecCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCee
Q psy15421        146 LSCCRFLDDNQ-IVTSS-GDMSCALWDIETGQ----QCASFIGHTGDVMSLSLAPDMRTFVS-GACDASAKLWDIRDGSC  218 (340)
Q Consensus       146 v~~~~~~~~~~-l~~~~-~d~~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~s-g~~dg~i~~wd~~~~~~  218 (340)
                      ...+.+.++++ +++++ .++.|.+|++.+..    .+..+ .+...+..++++|+++++++ ...++.|.+||+++...
T Consensus        82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~  160 (330)
T PRK11028         82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH  160 (330)
T ss_pred             ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence            34566776654 44443 48999999996422    22222 22334677889999988754 55679999999976321


Q ss_pred             ee-------EecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCcC--Cc--EEEEeec-CC---cccceEEEEEcCCC
Q psy15421        219 KQ-------TFPGHESDINAVTFFPNGWAFATGSD-DATCRLFDIRA--DQ--ELAMYSH-DN---IICGITSVAFSRSG  282 (340)
Q Consensus       219 ~~-------~~~~h~~~v~~v~~~~~~~~l~s~s~-d~~i~iwd~~~--~~--~~~~~~~-~~---~~~~i~~~~~s~~~  282 (340)
                      +.       ... .......++|+|+|++++++.. ++.|.+|++..  ++  ....+.. ..   .......+.|+|++
T Consensus       161 l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg  239 (330)
T PRK11028        161 LVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG  239 (330)
T ss_pred             ccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence            11       111 1234578999999999887776 89999999973  22  1222211 00   00112358899999


Q ss_pred             cEEEEEeC-CCcEEEEeCCCceeeeeeccCC---cceEEEEECCCCCEEEEeeC-CCcEEecC
Q psy15421        283 RLLLAGYD-DFNCNVWDSMKTERAGILAGHD---NRVSCLGVTEDGMAVATGSW-DSFLRIWN  340 (340)
Q Consensus       283 ~~l~~g~~-d~~i~iw~~~~~~~~~~~~~h~---~~i~~~~~s~d~~~l~s~s~-D~~i~iW~  340 (340)
                      ++++++.. ++.|.+|+.........+.+|.   .....+.++|||++|+++.. +++|.+|+
T Consensus       240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence            99998854 7899999875432222222232   23457899999999887665 88999983

>KOG1587|consensus

Probab=99.84  E-value=5.8e-18  Score=153.10  Aligned_cols=263  Identities=19%  Similarity=0.200  Sum_probs=186.1

Q ss_pred             CCeEEEEeCCCCCeeEEeeCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEccCCCCc--eEEEEeecCCCcceEEEEEc
Q psy15421         76 DGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP-SGSFVACGGLDNICSIYSLKTREGN--VRVSRELPGHTGYLSCCRFL  152 (340)
Q Consensus        76 d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~  152 (340)
                      ++.+.+||+.........-.-...|.++.|+| +..+++.|..+|.|-+||++.+...  .........|..++..+.|.
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            35799999877643333333456799999998 4677788889999999999876542  22334455788899988885


Q ss_pred             CC---CeEEEEeCCCeEEEEECCCCce-EE-----EEe------cCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEE---C
Q psy15421        153 DD---NQIVTSSGDMSCALWDIETGQQ-CA-----SFI------GHTGDVMSLSLAPD-MRTFVSGACDASAKLWD---I  213 (340)
Q Consensus       153 ~~---~~l~~~~~d~~v~iwd~~~~~~-~~-----~~~------~~~~~v~~~~~~~~-~~~~~sg~~dg~i~~wd---~  213 (340)
                      .+   ..+++++.||.|..|+++.-.. ..     ...      .....+++++|.|. -..|+.|+.+|.|.--.   .
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            32   4599999999999998764321 10     111      11234788999874 45789999999997733   2


Q ss_pred             CCCe-----eeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCc-CCcEEEEeecCCcccceEEEEEcCCCc-EEE
Q psy15421        214 RDGS-----CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIR-ADQELAMYSHDNIICGITSVAFSRSGR-LLL  286 (340)
Q Consensus       214 ~~~~-----~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~  286 (340)
                      +...     ....+..|.++|.++.++|=+..++..+.|.+++||... ...++..+..  ....+++++|||.-. .++
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~--~~~~v~~vaWSptrpavF~  458 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS--SPDYVTDVAWSPTRPAVFA  458 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh--ccceeeeeEEcCcCceEEE
Confidence            2221     122445678899999999976554444449999999987 5555544322  223489999999865 566


Q ss_pred             EEeCCCcEEEEeCCCc--eeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        287 AGYDDFNCNVWDSMKT--ERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       287 ~g~~d~~i~iw~~~~~--~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++..||.+.+||+...  ++.....-+....+.+.|+++|+.|+.|...|++++|+
T Consensus       459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~  514 (555)
T KOG1587|consen  459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK  514 (555)
T ss_pred             EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence            7778999999997543  34444444566677889999999999999999999874

>KOG0644|consensus

Probab=99.83  E-value=1.9e-20  Score=168.68  Aligned_cols=276  Identities=17%  Similarity=0.201  Sum_probs=208.4

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      .+.|.||...|+|+.|...|.++++|+.|..++||..++..++.+.++|...|...+.+.+..++++++.|..|++|.+.
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEE---E-ecCCCCeEEEEEcCCCCEEEEEe
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCAS---F-IGHTGDVMSLSLAPDMRTFVSGA  203 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~---~-~~~~~~v~~~~~~~~~~~~~sg~  203 (340)
                      .+.    ....+.+|++.|+++.|++-.   +.+.||++++||.+-......   . ..-...+.++.|..++..++||+
T Consensus       263 ~~~----pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  263 DGA----PVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             CCc----hHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence            654    334567999999999987643   677899999999871111110   0 11224567788888888999999


Q ss_pred             CCCcEEEEECCCCeeeeEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCC
Q psy15421        204 CDASAKLWDIRDGSCKQTFPGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSG  282 (340)
Q Consensus       204 ~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  282 (340)
                      .|++-..|.+..-.      .+...+.-+.++.+ ..+.+++=.+-.+.+|+...++.++...  .+...+..+.+||-+
T Consensus       336 ~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~--ghsd~~yvLd~Hpfn  407 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM--GHSDEVYVLDVHPFN  407 (1113)
T ss_pred             CCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc--ccccceeeeeecCCC
Confidence            99999999765321      12222222222222 2355666677888999998887665443  223357889999977


Q ss_pred             cEEE-EEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        283 RLLL-AGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       283 ~~l~-~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      ..++ +++.||...|||+..+-+++.+..-...+..-+||+||..++....-|.+.|
T Consensus       408 ~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i  464 (1113)
T KOG0644|consen  408 PRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYI  464 (1113)
T ss_pred             cHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEE
Confidence            6554 6889999999999888776654322356666789999988776555566655

>KOG2110|consensus

Probab=99.83  E-value=8.3e-18  Score=139.02  Aligned_cols=237  Identities=19%  Similarity=0.240  Sum_probs=170.5

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCC--eEEEEEccCCCCc
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDN--ICSIYSLKTREGN  132 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~  132 (340)
                      ...+..+.|+.+...|..|+.|| .++++.....+..........|--.-|+  ..++|..+.+.  .+++++++.+...
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence            34567777998888888888887 4778765544322222222333334454  34555544443  4777777543211


Q ss_pred             eEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEec---CCCCeEEEEEcCCCCEEEE-Ee-CCCc
Q psy15421        133 VRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIG---HTGDVMSLSLAPDMRTFVS-GA-CDAS  207 (340)
Q Consensus       133 ~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~s-g~-~dg~  207 (340)
                      +    .+ .....+.++.+..+ +|+.+-. .+|.|||++..+.+.++..   +...+.++.+++.+.+++- ++ ..|.
T Consensus        82 C----e~-~fpt~IL~VrmNr~-RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd  154 (391)
T KOG2110|consen   82 C----EI-FFPTSILAVRMNRK-RLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGD  154 (391)
T ss_pred             E----EE-ecCCceEEEEEccc-eEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCce
Confidence            1    11 12344666666443 4544444 3499999999998877654   3344666666666667763 33 4699


Q ss_pred             EEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCc-EEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEE
Q psy15421        208 AKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDAT-CRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLL  286 (340)
Q Consensus       208 i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~-i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  286 (340)
                      |.+||..+-+.+..+..|.+++.+++|+|+|.++||+|.-|+ ||++.+.+++.+.+|........|.+++|+|++++|+
T Consensus       155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~  234 (391)
T KOG2110|consen  155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLA  234 (391)
T ss_pred             EEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence            999999998888899999999999999999999999999998 6999999999999998766677899999999999999


Q ss_pred             EEeCCCcEEEEeCCC
Q psy15421        287 AGYDDFNCNVWDSMK  301 (340)
Q Consensus       287 ~g~~d~~i~iw~~~~  301 (340)
                      +.+..++|.+|.+.+
T Consensus       235 ~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  235 ASSNTETVHIFKLEK  249 (391)
T ss_pred             EecCCCeEEEEEecc
Confidence            999999999998653

>KOG1963|consensus

Probab=99.83  E-value=1.4e-17  Score=151.36  Aligned_cols=282  Identities=15%  Similarity=0.231  Sum_probs=201.7

Q ss_pred             CccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCC--C--CeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccC
Q psy15421         53 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYT--T--NKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKT  128 (340)
Q Consensus        53 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~--~--~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~  128 (340)
                      -|.-.+++.++||.+++++++..||.|.+|.-..  .  .....+.-|...|.+++|+++|.+|++||.++.+-+|.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            4666789999999999999999999999996543  1  12355667888999999999999999999999999999987


Q ss_pred             CCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEec-----------CCCCeEEEEEcCCC
Q psy15421        129 REGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIG-----------HTGDVMSLSLAPDM  196 (340)
Q Consensus       129 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~~~~  196 (340)
                      ++.     .-+|.-.+.+..+.+++++ ..+....|.+|.+..+.+......+.+           ..+-...++++|..
T Consensus       283 ~~k-----qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~  357 (792)
T KOG1963|consen  283 GKK-----QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT  357 (792)
T ss_pred             CCc-----ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC
Confidence            652     2245556778788887765 566678899999998765543333222           23446778899977


Q ss_pred             CEEEEEeCCCcEEEEECCCCeeeeEec-----CC------CCCeEEEEEecCCCEEEEEe--------CC--CcEEEEeC
Q psy15421        197 RTFVSGACDASAKLWDIRDGSCKQTFP-----GH------ESDINAVTFFPNGWAFATGS--------DD--ATCRLFDI  255 (340)
Q Consensus       197 ~~~~sg~~dg~i~~wd~~~~~~~~~~~-----~h------~~~v~~v~~~~~~~~l~s~s--------~d--~~i~iwd~  255 (340)
                      +.++-.+..|.|.+||+-+.+.+..++     .+      .-.+++++.+..|.+++|+-        .|  -.+|+|-.
T Consensus       358 ~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~  437 (792)
T KOG1963|consen  358 NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQY  437 (792)
T ss_pred             CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEE
Confidence            777888899999999998766544332     12      22466777777788888753        23  34789986


Q ss_pred             cCCcEE---EE-eecCCcccceEEEEEcCCCc-EEEEEeCCCcEEEEeCC----------CceeeeeeccCCcceEEEEE
Q psy15421        256 RADQEL---AM-YSHDNIICGITSVAFSRSGR-LLLAGYDDFNCNVWDSM----------KTERAGILAGHDNRVSCLGV  320 (340)
Q Consensus       256 ~~~~~~---~~-~~~~~~~~~i~~~~~s~~~~-~l~~g~~d~~i~iw~~~----------~~~~~~~~~~h~~~i~~~~~  320 (340)
                      .....-   .+ ...+.-...+..+..+|... ..++++.||.+++|...          .+.+...-..|..+++.++|
T Consensus       438 n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f  517 (792)
T KOG1963|consen  438 NPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF  517 (792)
T ss_pred             cCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh
Confidence            643321   11 11111122233344444444 89999999999999862          12344444468899999999


Q ss_pred             CCCCCEEEEeeCCCcEEecC
Q psy15421        321 TEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       321 s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |.||. +++.|.|++|.+||
T Consensus       518 s~dGs-lla~s~~~~Itiwd  536 (792)
T KOG1963|consen  518 SQDGS-LLAVSFDDTITIWD  536 (792)
T ss_pred             cCCCc-EEEEecCCEEEEec
Confidence            99996 55677899999997

>KOG1273|consensus

Probab=99.83  E-value=7.1e-19  Score=142.45  Aligned_cols=194  Identities=17%  Similarity=0.284  Sum_probs=152.8

Q ss_pred             eEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecC
Q psy15421        146 LSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG  224 (340)
Q Consensus       146 v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~  224 (340)
                      ..+|.|++.+ .++.|+.||.|.|||+.+......+.+|..+|.+++|+++|+.++|+|.|..|++||+..|.+.+.+. 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            5678888765 67889999999999999988778888999999999999999999999999999999999999887775 


Q ss_pred             CCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCcCCcE--EEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCC
Q psy15421        225 HESDINAVTFFPNGW-AFATGSDDATCRLFDIRADQE--LAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       225 h~~~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~  301 (340)
                      ..++|+.+.|+|... .++..--+..-.+-++.....  +..-........-.+..|++.|+++.+|...|.+.+++..+
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence            678999999999543 333333344444445443221  11111111111233456899999999999999999999999


Q ss_pred             ceeeeeeccCC-cceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        302 TERAGILAGHD-NRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       302 ~~~~~~~~~h~-~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .+++..++--. ..|..+-++..|.+|+.-+.|..||.++
T Consensus       185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye  224 (405)
T KOG1273|consen  185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE  224 (405)
T ss_pred             heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence            99988777655 7899999999999999999999999874

>KOG1538|consensus

Probab=99.83  E-value=6.9e-19  Score=155.40  Aligned_cols=239  Identities=15%  Similarity=0.280  Sum_probs=177.5

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEe-eCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAI-PLRSSWVMTCAYAPSGSFVACGGLDNICSIY  124 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~  124 (340)
                      ...++|+||.+-|++++|+.||+.++||+.|+.|.+|+..   ....+ ..|.+.|.|..|.|-...|++++-... -+|
T Consensus        44 ~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k---lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdF-glW  119 (1081)
T KOG1538|consen   44 TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK---LEGILKYSHNDAIQCMSFNPITHQLASCSLSDF-GLW  119 (1081)
T ss_pred             ccccccccccceEEEEEEccCCceeccCCCceeEEEeccc---ccceeeeccCCeeeEeecCchHHHhhhcchhhc-ccc
Confidence            4567999999999999999999999999999999999743   22222 478899999999999999998875542 467


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEe---cCCCCeEEEEEcCCCC---
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFI---GHTGDVMSLSLAPDMR---  197 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~---  197 (340)
                      ......  . ..   ......+.+|.|.+++ +++.|-.+|+|.+-+-. ++....+.   +.+++|.+++|+|...   
T Consensus       120 S~~qK~--V-~K---~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~  192 (1081)
T KOG1538|consen  120 SPEQKS--V-SK---HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGR  192 (1081)
T ss_pred             Chhhhh--H-Hh---hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCc
Confidence            654321  1 00   1123457788898776 57778899999998754 33333333   4677899999999742   


Q ss_pred             --EEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEE
Q psy15421        198 --TFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITS  275 (340)
Q Consensus       198 --~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~  275 (340)
                        .++......++.++.+. |+.+..-+..+-...|+.+.|+|.++..|+.|+.+++|.- .+-.+.+.+.  ....|..
T Consensus       193 ~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~--~D~WIWt  268 (1081)
T KOG1538|consen  193 NDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGE--QDSWIWT  268 (1081)
T ss_pred             cceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccc--cceeEEE
Confidence              45566666777777654 4444333333445679999999999999999999999964 3445555443  3345999


Q ss_pred             EEEcCCCcEEEEEeCCCcEEEEeC
Q psy15421        276 VAFSRSGRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       276 ~~~s~~~~~l~~g~~d~~i~iw~~  299 (340)
                      +...|++++++.|+.||+|..|++
T Consensus       269 V~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  269 VQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             EEEccCCceEEEEEccCeeehhhh
Confidence            999999999999999999999975

>KOG1034|consensus

Probab=99.82  E-value=2.9e-18  Score=139.60  Aligned_cols=245  Identities=19%  Similarity=0.255  Sum_probs=184.7

Q ss_pred             CccCcEEEEEEcCC----CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcc
Q psy15421         53 GHLAKIYAMHWGSD----SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSG-SFVACGGLDNICSIYSLK  127 (340)
Q Consensus        53 ~h~~~v~~~~~s~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~-~~l~~~~~d~~v~i~~~~  127 (340)
                      .|....+.++|+-|    +++++.+|.-|.|+|.|+.+++....+.+|...|..+.+.|+. +++++++.|..||+|+++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            37778899998754    5689999999999999999999999999999999999999965 788999999999999998


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCce------EEE---------------------
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQ------CAS---------------------  179 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~------~~~---------------------  179 (340)
                      +.. -+.+..-..+|...|.++-|+.+ .++++++.|.++++|++...+.      ...                     
T Consensus       167 ~~~-Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs  245 (385)
T KOG1034|consen  167 TDV-CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS  245 (385)
T ss_pred             CCe-EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence            753 22334456789999999999765 4789999999999999973211      000                     


Q ss_pred             -EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCee-------------eeEecCCCCCeEEEEE--ecCCCEEE
Q psy15421        180 -FIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIR-DGSC-------------KQTFPGHESDINAVTF--FPNGWAFA  242 (340)
Q Consensus       180 -~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~-~~~~-------------~~~~~~h~~~v~~v~~--~~~~~~l~  242 (340)
                       -.-|...|-|+.|-  +.++++-|.++.|..|... -++.             ...++-....|+-+.|  .|-++.||
T Consensus       246 t~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la  323 (385)
T KOG1034|consen  246 TTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA  323 (385)
T ss_pred             ccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence             01134444444443  5789999999999999862 1111             1223333445555544  46688999


Q ss_pred             EEeCCCcEEEEeCcCCcEE--EEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCC
Q psy15421        243 TGSDDATCRLFDIRADQEL--AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM  300 (340)
Q Consensus       243 s~s~d~~i~iwd~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~  300 (340)
                      .|.+.|.+.+||++...+.  .++.+..-...|...+|+.|+.+|+...+|++|--||..
T Consensus       324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  324 LGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             hccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            9999999999999876543  233333334558999999999999999999999999853

>KOG0649|consensus

Probab=99.81  E-value=2.2e-17  Score=129.35  Aligned_cols=231  Identities=19%  Similarity=0.298  Sum_probs=166.6

Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEccCC-------CCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECC
Q psy15421        100 VMTCAYAPSGSFVACGGLDNICSIYSLKTR-------EGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIE  172 (340)
Q Consensus       100 i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~  172 (340)
                      |..-+++|.++||+.|..+|.+.+..+..-       +++. ......+|.+++..+.|.++  ++..++||.|+-|..+
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~-~iv~eqahdgpiy~~~f~d~--~Lls~gdG~V~gw~W~   89 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKL-KIVPEQAHDGPIYYLAFHDD--FLLSGGDGLVYGWEWN   89 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCc-ceeeccccCCCeeeeeeehh--heeeccCceEEEeeeh
Confidence            455678999999999999999999987642       1222 22344789999999988743  3344567999988764


Q ss_pred             CCce---EEE-----EecCC-----CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCC
Q psy15421        173 TGQQ---CAS-----FIGHT-----GDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGW  239 (340)
Q Consensus       173 ~~~~---~~~-----~~~~~-----~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~  239 (340)
                      ....   ...     ...|.     .+|++|-+.|..+.++.++.|+.+.-||+++|+..+.+++|...|.++.-.....
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~  169 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG  169 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence            3321   111     01122     3588999999888888888999999999999999999999999999999876677


Q ss_pred             EEEEEeCCCcEEEEeCcCCcEEEEeecCCcc--------cceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccC
Q psy15421        240 AFATGSDDATCRLFDIRADQELAMYSHDNII--------CGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGH  311 (340)
Q Consensus       240 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~--------~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h  311 (340)
                      .++||+.||++|+||.++.+.+.++....+.        .-|.+++  -+..+|++|+.. .+.+|++...++...+. -
T Consensus       170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp-~lslwhLrsse~t~vfp-i  245 (325)
T KOG0649|consen  170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGP-KLSLWHLRSSESTCVFP-I  245 (325)
T ss_pred             ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCC-ceeEEeccCCCceEEEe-c
Confidence            8999999999999999999988776532211        1244444  456688888765 58999998877766553 2


Q ss_pred             CcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        312 DNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       312 ~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      ..++..+.|-.|  .+++++....|.-|
T Consensus       246 pa~v~~v~F~~d--~vl~~G~g~~v~~~  271 (325)
T KOG0649|consen  246 PARVHLVDFVDD--CVLIGGEGNHVQSY  271 (325)
T ss_pred             ccceeEeeeecc--eEEEeccccceeee
Confidence            344555555554  56666655555444

>KOG0303|consensus

Probab=99.81  E-value=7.1e-18  Score=140.47  Aligned_cols=197  Identities=21%  Similarity=0.352  Sum_probs=154.4

Q ss_pred             ecCCCcceEEEEEc--CCCeEEEEeCCCeEEEEECCCC-------ceEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcE
Q psy15421        139 LPGHTGYLSCCRFL--DDNQIVTSSGDMSCALWDIETG-------QQCASFIGHTGDVMSLSLAPDM-RTFVSGACDASA  208 (340)
Q Consensus       139 ~~~~~~~v~~~~~~--~~~~l~~~~~d~~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~~~sg~~dg~i  208 (340)
                      +.+|+..|..+.|.  +++.+++|+.|.+|.+|.+..+       +++..+.+|...|-.++|+|.- +.|++++.|.+|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            46899999888885  4567999999999999998654       3466788999999999999964 578899999999


Q ss_pred             EEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEe-ecCCcccceEEEEEcCCCcEEEE
Q psy15421        209 KLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMY-SHDNIICGITSVAFSRSGRLLLA  287 (340)
Q Consensus       209 ~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
                      .+|++.+++.+.++. |..-|.++.|+.||.+|++.+.|+.|+|||.+.+..+..- .|.+.  .-..+.|-.+|+++.+
T Consensus       157 ~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~--k~~Raifl~~g~i~tT  233 (472)
T KOG0303|consen  157 SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA--KPARAIFLASGKIFTT  233 (472)
T ss_pred             EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC--CcceeEEeccCceeee
Confidence            999999999888887 9999999999999999999999999999999998887765 34433  3456788889997777


Q ss_pred             Ee---CCCcEEEEeCCCcee---eeeeccCCcceEEEEECCCCCEEEE-eeCCCcEEec
Q psy15421        288 GY---DDFNCNVWDSMKTER---AGILAGHDNRVSCLGVTEDGMAVAT-GSWDSFLRIW  339 (340)
Q Consensus       288 g~---~d~~i~iw~~~~~~~---~~~~~~h~~~i~~~~~s~d~~~l~s-~s~D~~i~iW  339 (340)
                      |.   .+..+-+||-.+.+.   +..+..-.+ |.-==|.+|.+.+.- |-.|+.||.+
T Consensus       234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnG-vl~PFyD~dt~ivYl~GKGD~~IRYy  291 (472)
T KOG0303|consen  234 GFSRMSERQIALWDPNNLEEPIALQELDTSNG-VLLPFYDPDTSIVYLCGKGDSSIRYF  291 (472)
T ss_pred             ccccccccceeccCcccccCcceeEEeccCCc-eEEeeecCCCCEEEEEecCCcceEEE
Confidence            65   467888998554432   334443333 322235777776554 5559999976

>KOG0771|consensus

Probab=99.81  E-value=1.6e-17  Score=139.62  Aligned_cols=191  Identities=21%  Similarity=0.274  Sum_probs=146.8

Q ss_pred             EEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecC-
Q psy15421        147 SCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG-  224 (340)
Q Consensus       147 ~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~-  224 (340)
                      .+++|..+ ..+++++.||++++|+......+.....|..+|.++.|+||++++++-+.| ..++|+.+++.++..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            35666655 678899999999999988877777778899999999999999999999999 999999999966654432 


Q ss_pred             -CCCCeEEEEEecCC-----CEEEEEeCCCcEEEEeCcCCcE---EEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEE
Q psy15421        225 -HESDINAVTFFPNG-----WAFATGSDDATCRLFDIRADQE---LAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCN  295 (340)
Q Consensus       225 -h~~~v~~v~~~~~~-----~~l~s~s~d~~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~  295 (340)
                       .......+.|..|+     ..++.-..-+.|+.||+.....   +.......-...|++++.+++|++++.|+.||.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence             22334566777666     3445555567777777653222   11111111123599999999999999999999999


Q ss_pred             EEeCCCceeeeee-ccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        296 VWDSMKTERAGIL-AGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       296 iw~~~~~~~~~~~-~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      +++..+.++.... ..|...|+.|.|+||.+++++-|.|.++.|
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v  350 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV  350 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence            9998887765543 579999999999999999999999988765

>KOG1524|consensus

Probab=99.81  E-value=4.6e-18  Score=146.72  Aligned_cols=262  Identities=17%  Similarity=0.234  Sum_probs=183.4

Q ss_pred             CccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEEC--------CCCCEEEEEeCCCeEEEE
Q psy15421         53 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYA--------PSGSFVACGGLDNICSIY  124 (340)
Q Consensus        53 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~--------~~~~~l~~~~~d~~v~i~  124 (340)
                      .|...|.++.|......+. ++.|+.+.+|+..+.............++..-+.        .....|+.++.||.+.+.
T Consensus        12 r~~e~vc~v~w~~~eei~~-~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYF-VSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEE-eccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            4666778999987766555 5566666666544333333333333333332221        123467778888887766


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEe
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGA  203 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~  203 (340)
                      +-..     ++.+.+.+|.+.+.+-+|++++ -|++++.||.|++|.-... .-.++.....+|.|++|.|+++.++-+ 
T Consensus        91 ~k~~-----rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-LRStl~Q~~~~v~c~~W~p~S~~vl~c-  163 (737)
T KOG1524|consen   91 NKSA-----RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-LRSTVVQNEESIRCARWAPNSNSIVFC-  163 (737)
T ss_pred             cccc-----hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-HHHHHhhcCceeEEEEECCCCCceEEe-
Confidence            5322     3456678999999999998876 5999999999999987543 222233345679999999998765543 


Q ss_pred             CCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCc
Q psy15421        204 CDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR  283 (340)
Q Consensus       204 ~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  283 (340)
                      ..+.+.+=-+..+..+-.++.|.+-|.++.|+|....+++|+.|-..++||-- ++.+...  ..+..+|++++|.|+ +
T Consensus       164 ~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S--~~~ey~ITSva~npd-~  239 (737)
T KOG1524|consen  164 QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTS--AAEEYAITSVAFNPE-K  239 (737)
T ss_pred             cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccC--Chhccceeeeeeccc-c
Confidence            34556565566565667789999999999999999999999999999999975 3444332  233457999999999 7


Q ss_pred             EEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        284 LLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       284 ~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      .++.|+.+ +.|           .-....+.|..++||+||..++.|...|.+.+
T Consensus       240 ~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  240 DYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ceeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence            77777764 233           22345678999999999999999988888753

>KOG0650|consensus

Probab=99.80  E-value=9.9e-18  Score=146.36  Aligned_cols=242  Identities=14%  Similarity=0.170  Sum_probs=180.2

Q ss_pred             eEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC--eEEEEeCCCeEE
Q psy15421         90 VHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN--QIVTSSGDMSCA  167 (340)
Q Consensus        90 ~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~v~  167 (340)
                      -..+.+|.+.|.++...|.|..|++|+.||+++||.+.++...    +++. -.+.|.++.|.+..  -+++++.+..+.
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv----r~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~  467 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV----RTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVL  467 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE----EEEe-ecceeEEEEecCCCCceeEEEEecCceE
Confidence            3456789999999999999999999999999999999886422    2211 23367777786543  244444333344


Q ss_pred             EEECCCC-------------------------------------ceEEEEecCCCCeEEEEEcCCCCEEEEEeCC---Cc
Q psy15421        168 LWDIETG-------------------------------------QQCASFIGHTGDVMSLSLAPDMRTFVSGACD---AS  207 (340)
Q Consensus       168 iwd~~~~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d---g~  207 (340)
                      +-+..-|                                     .-+.....|...|..|.|+..|.+|++...+   ..
T Consensus       468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~  547 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS  547 (733)
T ss_pred             EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence            3332111                                     0122344578889999999999999986654   67


Q ss_pred             EEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEE
Q psy15421        208 AKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLA  287 (340)
Q Consensus       208 i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
                      |.|.++.......-|..-.+.|.++.|+|...+|+.++. ..|+|||+.....+..+.. + ...|..++.+|.|.-|++
T Consensus       548 VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~t-g-~kwiS~msihp~GDnli~  624 (733)
T KOG0650|consen  548 VLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLT-G-SKWISSMSIHPNGDNLIL  624 (733)
T ss_pred             EEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhc-C-CeeeeeeeecCCCCeEEE
Confidence            788888765544445444567899999999989888875 7899999976544332211 1 123889999999999999


Q ss_pred             EeCCCcEEEEeCC-CceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        288 GYDDFNCNVWDSM-KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       288 g~~d~~i~iw~~~-~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      |+.|+.+..||+. +.++.++++-|...|.+|+|++-=.+++|||.||++.|+
T Consensus       625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence            9999999999975 345778899999999999999999999999999999875

>KOG1524|consensus

Probab=99.80  E-value=3.6e-18  Score=147.38  Aligned_cols=207  Identities=20%  Similarity=0.326  Sum_probs=165.3

Q ss_pred             CeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceE
Q psy15421         68 RNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLS  147 (340)
Q Consensus        68 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~  147 (340)
                      ..++.+++||.+.|-+ ..++....+.+|..++.+-.|+|+|.-|+++|.||.|++|.-.   +..  ..++......|.
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs---GML--RStl~Q~~~~v~  149 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS---GML--RSTVVQNEESIR  149 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc---chH--HHHHhhcCceeE
Confidence            4678889999999987 4566778889999999999999999999999999999999842   221  123345667899


Q ss_pred             EEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCC
Q psy15421        148 CCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHES  227 (340)
Q Consensus       148 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~  227 (340)
                      |+.|.++..-+.-+..+.+.|=.+..+..+....+|.+-|.++.|+|....+++|+.|-..++||.. |+....-..|+.
T Consensus       150 c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey  228 (737)
T KOG1524|consen  150 CARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY  228 (737)
T ss_pred             EEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc
Confidence            9999776433333455777777777777778889999999999999999999999999999999954 666777778999


Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEE
Q psy15421        228 DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNV  296 (340)
Q Consensus       228 ~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~i  296 (340)
                      +|++++|.|+ +.++.+|.+ +++            +..+. ..+|..++|||||..+++|+..|.+.+
T Consensus       229 ~ITSva~npd-~~~~v~S~n-t~R------------~~~p~-~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  229 AITSVAFNPE-KDYLLWSYN-TAR------------FSSPR-VGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ceeeeeeccc-cceeeeeee-eee------------ecCCC-ccceEEEEEcCCCceeeccccCceEEE
Confidence            9999999999 677777742 333            21122 245889999999999999999998754

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.79  E-value=1e-15  Score=134.37  Aligned_cols=243  Identities=14%  Similarity=0.195  Sum_probs=157.7

Q ss_pred             CcEEEEEEcCCCCeEEEEe-CCCeEEEEeCCC-CCe--eEEeeCCCCcEEEEEECCCCCEEEEEeC-CCeEEEEEccCCC
Q psy15421         56 AKIYAMHWGSDSRNLVSAS-QDGKLIVWDSYT-TNK--VHAIPLRSSWVMTCAYAPSGSFVACGGL-DNICSIYSLKTRE  130 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~-~~~--~~~~~~~~~~i~~v~~~~~~~~l~~~~~-d~~v~i~~~~~~~  130 (340)
                      +....++++|++++|+.++ .++.|.+|++.. ++.  ..... .......++++|+++++++++. ++.+.+|++....
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence            4567889999999887654 588999999863 332  12222 2234567899999999888764 7889999986432


Q ss_pred             CceEEEEeecCCCcceEEEEEcCCC-eE-EEEeCCCeEEEEECCCCceEEE-----Ee-cCCCCeEEEEEcCCCCEEEEE
Q psy15421        131 GNVRVSRELPGHTGYLSCCRFLDDN-QI-VTSSGDMSCALWDIETGQQCAS-----FI-GHTGDVMSLSLAPDMRTFVSG  202 (340)
Q Consensus       131 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~d~~v~iwd~~~~~~~~~-----~~-~~~~~v~~~~~~~~~~~~~sg  202 (340)
                      ........+++. .....+.+.+++ .+ ++...++.|.+||+.+...+..     .. .....+..++|+|+++++++.
T Consensus       114 ~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~  192 (330)
T PRK11028        114 IPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV  192 (330)
T ss_pred             CCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE
Confidence            111122222222 223445566665 44 4455689999999976432211     11 123346789999999998877


Q ss_pred             eC-CCcEEEEECCC--Ce--eeeEecCC------CCCeEEEEEecCCCEEEEEeC-CCcEEEEeCcCCc-EEEEeecCCc
Q psy15421        203 AC-DASAKLWDIRD--GS--CKQTFPGH------ESDINAVTFFPNGWAFATGSD-DATCRLFDIRADQ-ELAMYSHDNI  269 (340)
Q Consensus       203 ~~-dg~i~~wd~~~--~~--~~~~~~~h------~~~v~~v~~~~~~~~l~s~s~-d~~i~iwd~~~~~-~~~~~~~~~~  269 (340)
                      .. +++|.+|+++.  ++  .+..+..+      ......+.++|++++++++.. ++.|.+|++.... .+....+...
T Consensus       193 ~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~  272 (330)
T PRK11028        193 NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT  272 (330)
T ss_pred             ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec
Confidence            65 99999999973  32  23333221      112336889999998888754 7899999986432 2222222111


Q ss_pred             ccceEEEEEcCCCcEEEEEeC-CCcEEEEeCC
Q psy15421        270 ICGITSVAFSRSGRLLLAGYD-DFNCNVWDSM  300 (340)
Q Consensus       270 ~~~i~~~~~s~~~~~l~~g~~-d~~i~iw~~~  300 (340)
                      ......+.|+|+|++|+++.. +++|.+|++.
T Consensus       273 ~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        273 ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            123567899999999998775 8899999763

>KOG1587|consensus

Probab=99.79  E-value=3.5e-17  Score=148.07  Aligned_cols=246  Identities=15%  Similarity=0.157  Sum_probs=175.6

Q ss_pred             cCcEEEEEEcCCC-CeEEEEeCCCeEEEEeCCCCCe--eE----EeeCCCCcEEEEEECCCC--CEEEEEeCCCeEEEEE
Q psy15421         55 LAKIYAMHWGSDS-RNLVSASQDGKLIVWDSYTTNK--VH----AIPLRSSWVMTCAYAPSG--SFVACGGLDNICSIYS  125 (340)
Q Consensus        55 ~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~--~~----~~~~~~~~i~~v~~~~~~--~~l~~~~~d~~v~i~~  125 (340)
                      ..+|.++.|+|.. .+++.|..+|.|.+||+..+..  ..    ....|..++..+.|-.+.  .-+++++.||.|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            4689999999965 5677777899999999987665  22    223577888888887654  4489999999999998


Q ss_pred             ccCCCCceE--EEEeec------CCCcceEEEEEcC--CCeEEEEeCCCeEEEEECCCCc--------eEEEEecCCCCe
Q psy15421        126 LKTREGNVR--VSRELP------GHTGYLSCCRFLD--DNQIVTSSGDMSCALWDIETGQ--------QCASFIGHTGDV  187 (340)
Q Consensus       126 ~~~~~~~~~--~~~~~~------~~~~~v~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~--------~~~~~~~~~~~v  187 (340)
                      ++.-.....  ......      .....+.++.|.+  ...++.|+.+|.|.--+....+        ....+..|.++|
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v  401 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV  401 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence            764221100  000000      1223456667754  4578899999998874433221        133456788999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECC-CCeeeeEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCCcEEEEee
Q psy15421        188 MSLSLAPDMRTFVSGACDASAKLWDIR-DGSCKQTFPGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQELAMYS  265 (340)
Q Consensus       188 ~~~~~~~~~~~~~sg~~dg~i~~wd~~-~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~  265 (340)
                      .++.++|=+..++..+.|.+++||... ...++..+..+...+.+++|+|. ...|+++..||.|.+||+..........
T Consensus       402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s  481 (555)
T KOG1587|consen  402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS  481 (555)
T ss_pred             EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccc
Confidence            999999976654444449999999877 55566677778888999999997 4578999999999999997544322222


Q ss_pred             cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCC
Q psy15421        266 HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM  300 (340)
Q Consensus       266 ~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~  300 (340)
                      ........+.+.|++.|++|++|...|++.+|++.
T Consensus       482 ~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  482 QKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             ccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            22113346788889999999999999999999974

>KOG1517|consensus

Probab=99.78  E-value=1e-17  Score=154.87  Aligned_cols=242  Identities=20%  Similarity=0.283  Sum_probs=169.9

Q ss_pred             CcEEEEEEcC--CCCeEEEEeCCCeEEEEeCCCCC-----eeEEee-------CCCCcEEEEEECCCCCEEEEEeCCCeE
Q psy15421         56 AKIYAMHWGS--DSRNLVSASQDGKLIVWDSYTTN-----KVHAIP-------LRSSWVMTCAYAPSGSFVACGGLDNIC  121 (340)
Q Consensus        56 ~~v~~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~-------~~~~~i~~v~~~~~~~~l~~~~~d~~v  121 (340)
                      ..|..+.+-.  |..++++|+.||.||||+-+...     .+....       +..+.-..+.|.....+|+++|.-..|
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence            4688888743  55789999999999999765432     111111       111112345677777777777779999


Q ss_pred             EEEEccCCCCceEEEEeecCC-CcceEEEEE--cCCCeEEEEeCCCeEEEEECCCCc---eEEEEecCCCC--eEEEEEc
Q psy15421        122 SIYSLKTREGNVRVSRELPGH-TGYLSCCRF--LDDNQIVTSSGDMSCALWDIETGQ---QCASFIGHTGD--VMSLSLA  193 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~-~~~v~~~~~--~~~~~l~~~~~d~~v~iwd~~~~~---~~~~~~~~~~~--v~~~~~~  193 (340)
                      +|||.....    ....++.. ...++++.-  ..++.+++|..||+|++||.+...   .+.....|+..  |..+.+.
T Consensus      1190 RIWDa~~E~----~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq 1265 (1387)
T KOG1517|consen 1190 RIWDAHKEQ----VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQ 1265 (1387)
T ss_pred             EEEecccce----eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEee
Confidence            999986532    22333322 223333322  235689999999999999987643   45667778887  9999999


Q ss_pred             CCCCE-EEEEeCCCcEEEEECCCCeee--eEecCC---CCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecC
Q psy15421        194 PDMRT-FVSGACDASAKLWDIRDGSCK--QTFPGH---ESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHD  267 (340)
Q Consensus       194 ~~~~~-~~sg~~dg~i~~wd~~~~~~~--~~~~~h---~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  267 (340)
                      ++|-. +++|+.||.|++||++.....  .+...|   ++..+++..+++...+|+|+. +.|+||++...+.-......
T Consensus      1266 ~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~ 1344 (1387)
T KOG1517|consen 1266 RQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNP 1344 (1387)
T ss_pred             cCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCc
Confidence            97765 999999999999999974221  122222   235899999999999999998 99999998754432211111


Q ss_pred             ----CcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc
Q psy15421        268 ----NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT  302 (340)
Q Consensus       268 ----~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~  302 (340)
                          ....++.|++|||.-..+|+|+.|..|.||...+.
T Consensus      1345 ~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             ccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence                12345899999999999999999999999986544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=6.8e-17  Score=146.30  Aligned_cols=233  Identities=16%  Similarity=0.166  Sum_probs=162.4

Q ss_pred             CCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC---CeEEEEEccCCCCceEEEEeecCCCcceEEEEEc
Q psy15421         76 DGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD---NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL  152 (340)
Q Consensus        76 d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  152 (340)
                      +..|.+||..... ...+..+...+....|+|||++++..+.+   ..+.+|++.++..  .......+|..   ...|+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~--~~l~~~~g~~~---~~~wS  256 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR--KVVASFRGHNG---APAFS  256 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce--EEEecCCCccC---ceeEC
Confidence            4789999976544 44555666778999999999999887654   3689999865432  22233444433   45787


Q ss_pred             CCC-eEEEEe-CCCeEEEE--ECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCe-eeeEecCCC
Q psy15421        153 DDN-QIVTSS-GDMSCALW--DIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGA-CDASAKLWDIRDGS-CKQTFPGHE  226 (340)
Q Consensus       153 ~~~-~l~~~~-~d~~v~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~-~dg~i~~wd~~~~~-~~~~~~~h~  226 (340)
                      +++ .|+.+. .++.+.||  |+.+++ ...+..+...+....|+||++.++..+ .+|...+|++.... ....+ .+.
T Consensus       257 PDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~  334 (429)
T PRK01742        257 PDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR  334 (429)
T ss_pred             CCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC
Confidence            776 465543 57766655  665554 455666777788999999999776554 67888999765322 12222 343


Q ss_pred             CCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeC--CCcee
Q psy15421        227 SDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS--MKTER  304 (340)
Q Consensus       227 ~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~--~~~~~  304 (340)
                      .  ....|+|+|++++..+.++ +.+||+.+++........    ....+.|+|+|++|+.++.++.+.+|..  .++..
T Consensus       335 ~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~  407 (429)
T PRK01742        335 G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF----LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRF  407 (429)
T ss_pred             C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC----CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence            3  3578999999998888765 555998876543322111    1245789999999999999998888874  35777


Q ss_pred             eeeeccCCcceEEEEECCC
Q psy15421        305 AGILAGHDNRVSCLGVTED  323 (340)
Q Consensus       305 ~~~~~~h~~~i~~~~~s~d  323 (340)
                      ...+.+|.+.+...+|||-
T Consensus       408 ~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        408 KARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             eEEccCCCCCCCCcccCCC
Confidence            7888889999999999984

>KOG2111|consensus

Probab=99.77  E-value=2.7e-15  Score=122.08  Aligned_cols=237  Identities=16%  Similarity=0.176  Sum_probs=160.3

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEE-EeCC------CeEEEEEccCC
Q psy15421         57 KIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVAC-GGLD------NICSIYSLKTR  129 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~-~~~d------~~v~i~~~~~~  129 (340)
                      ...+++|+.|..-++.+.. .-.+|++...-++...-..+.+.+.-+..--..++|+. ||..      +.+.|||=.  
T Consensus         7 ~~lsvs~NQD~ScFava~~-~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~--   83 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATD-TGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL--   83 (346)
T ss_pred             ceeEEEEccCCceEEEEec-CceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc--
Confidence            3456999999887765544 55899988764433222222222221211222345444 3332      578999922  


Q ss_pred             CCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECC-CCceEEEEecCC--CCeEEEEEcCCCCEEEE-EeCC
Q psy15421        130 EGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIE-TGQQCASFIGHT--GDVMSLSLAPDMRTFVS-GACD  205 (340)
Q Consensus       130 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~--~~v~~~~~~~~~~~~~s-g~~d  205 (340)
                      ..  +...++ .-...|..+++..+ .++. --.+.|.+|... ..+.+..+....  ...++++-+.+..+++. |-.-
T Consensus        84 k~--~~i~el-~f~~~I~~V~l~r~-riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~  158 (346)
T KOG2111|consen   84 KE--RCIIEL-SFNSEIKAVKLRRD-RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT  158 (346)
T ss_pred             cC--cEEEEE-EeccceeeEEEcCC-eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence            11  222222 23456666666544 3333 357889999987 445555554322  23444444444555654 5567


Q ss_pred             CcEEEEECCCCee--eeEecCCCCCeEEEEEecCCCEEEEEeCCCc-EEEEeCcCCcEEEEeecCCcccceEEEEEcCCC
Q psy15421        206 ASAKLWDIRDGSC--KQTFPGHESDINAVTFFPNGWAFATGSDDAT-CRLFDIRADQELAMYSHDNIICGITSVAFSRSG  282 (340)
Q Consensus       206 g~i~~wd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~-i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  282 (340)
                      |+|.+-|+...+.  ...+++|..+|.|++..-+|..+||+|..|+ |||||..++.++.++........|.+++|||++
T Consensus       159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~  238 (346)
T KOG2111|consen  159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS  238 (346)
T ss_pred             ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence            9999999987654  3678899999999999999999999999999 799999999999888765556679999999999


Q ss_pred             cEEEEEeCCCcEEEEeCCC
Q psy15421        283 RLLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       283 ~~l~~g~~d~~i~iw~~~~  301 (340)
                      .+|+++++.|++.||.+..
T Consensus       239 s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  239 SWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             cEEEEEcCCCeEEEEEeec
Confidence            9999999999999998654

>KOG0771|consensus

Probab=99.77  E-value=1.3e-17  Score=140.12  Aligned_cols=195  Identities=22%  Similarity=0.309  Sum_probs=149.4

Q ss_pred             EEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEe
Q psy15421         59 YAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRE  138 (340)
Q Consensus        59 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~  138 (340)
                      .+++|+++|..+++++.||++|||+......+.....|...|.++.|+|||++|++-+.| ..+||+..++-.   +.+.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~---~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA---LARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch---hhhc
Confidence            789999999999999999999999977777777777888889999999999999999999 889999987621   1111


Q ss_pred             e-cCCCcceEEEEEcCCC-----eEEEEeC-CCeEEEEECCCCce-----EEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q psy15421        139 L-PGHTGYLSCCRFLDDN-----QIVTSSG-DMSCALWDIETGQQ-----CASFIGHTGDVMSLSLAPDMRTFVSGACDA  206 (340)
Q Consensus       139 ~-~~~~~~v~~~~~~~~~-----~l~~~~~-d~~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg  206 (340)
                      - .........|+|..++     ++++.-. .+.|+.|++.....     ..........+++++.+++|++++.|+.||
T Consensus       224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG  303 (398)
T KOG0771|consen  224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG  303 (398)
T ss_pred             CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence            1 2223345567786554     3433322 45677766543221     111122334699999999999999999999


Q ss_pred             cEEEEECCCCeeeeEe-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcC
Q psy15421        207 SAKLWDIRDGSCKQTF-PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRA  257 (340)
Q Consensus       207 ~i~~wd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  257 (340)
                      .|-+++..+-+..+.. +.|..-|+.+.|+|+.+++++-+.|....+..+..
T Consensus       304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999999887766554 57999999999999999999999998888877653

>KOG1523|consensus

Probab=99.77  E-value=2.6e-16  Score=128.00  Aligned_cols=204  Identities=16%  Similarity=0.249  Sum_probs=163.6

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC---eeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCC
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN---KVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREG  131 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~  131 (340)
                      ..+|+|.+|++|+..++.+-....|.|+.....+   ..++++.|+..|+.|.|+|..+.+++++.|..-.+|.... ++
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~-~~   88 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS-GG   88 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC-CC
Confidence            4799999999999999999999999999766544   5688999999999999999999999999999999998753 34


Q ss_pred             ceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCce--E--EEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q psy15421        132 NVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQ--C--ASFIGHTGDVMSLSLAPDMRTFVSGACDA  206 (340)
Q Consensus       132 ~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~--~--~~~~~~~~~v~~~~~~~~~~~~~sg~~dg  206 (340)
                      ..+..-.+..+.....++.|++. ++|+.|++...|.+|-.+....  +  ..-..+.+.|.+++|+|+.-+++.|+.|+
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~  168 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG  168 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence            55555555667888999999865 6789999999999987764321  1  11134667899999999999999999999


Q ss_pred             cEEEEEC-----CC-------------CeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCc
Q psy15421        207 SAKLWDI-----RD-------------GSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ  259 (340)
Q Consensus       207 ~i~~wd~-----~~-------------~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  259 (340)
                      .++++..     ++             |+++..+..-.+.+..+.|+|.|..|+=.+.|..+.+-|.....
T Consensus       169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            9999963     11             11222332345679999999999999999999999999977553

>KOG0290|consensus

Probab=99.77  E-value=9.1e-17  Score=129.00  Aligned_cols=239  Identities=16%  Similarity=0.306  Sum_probs=169.4

Q ss_pred             EEEEEEC--CC-CCEEEEEeC----CCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-----eEEEEeCCCeEE
Q psy15421        100 VMTCAYA--PS-GSFVACGGL----DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-----QIVTSSGDMSCA  167 (340)
Q Consensus       100 i~~v~~~--~~-~~~l~~~~~----d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~l~~~~~d~~v~  167 (340)
                      ++...|+  |+ +.+|+.|+.    .+.|.|..+....+....... ..|.-+++.+.|.++.     .+++ +.+-.++
T Consensus        47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdlLA-Ts~D~LR  124 (364)
T KOG0290|consen   47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYPDLLA-TSSDFLR  124 (364)
T ss_pred             eeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCcchhh-cccCeEE
Confidence            4555555  22 345666652    467777776644333322222 3577788888887653     2333 3456899


Q ss_pred             EEECCCCc--e-E-EEE-----ecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe---eeeEecCCCCCeEEEEE
Q psy15421        168 LWDIETGQ--Q-C-ASF-----IGHTGDVMSLSLAP-DMRTFVSGACDASAKLWDIRDGS---CKQTFPGHESDINAVTF  234 (340)
Q Consensus       168 iwd~~~~~--~-~-~~~-----~~~~~~v~~~~~~~-~~~~~~sg~~dg~i~~wd~~~~~---~~~~~~~h~~~v~~v~~  234 (340)
                      +|.+....  . . ..+     ..+.+++++..|+. +-+++.+.|-|-+..+||++++.   ....+.+|..+|..|+|
T Consensus       125 lWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf  204 (364)
T KOG0290|consen  125 LWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAF  204 (364)
T ss_pred             EEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEe
Confidence            99886321  1 1 111     23556788888875 56788899999999999999863   35567789999999999


Q ss_pred             ecCC-CEEEEEeCCCcEEEEeCcCCcEEEE-eecCCcccceEEEEEcCCCc-EEEE-EeCCCcEEEEeCCCc-eeeeeec
Q psy15421        235 FPNG-WAFATGSDDATCRLFDIRADQELAM-YSHDNIICGITSVAFSRSGR-LLLA-GYDDFNCNVWDSMKT-ERAGILA  309 (340)
Q Consensus       235 ~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~-~l~~-g~~d~~i~iw~~~~~-~~~~~~~  309 (340)
                      ...+ ..|||.|.||++|+||++....-.. +.......++..++|++... ++|+ +-+...|.|-|++.. .++.++.
T Consensus       205 ~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~  284 (364)
T KOG0290|consen  205 LKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR  284 (364)
T ss_pred             ccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh
Confidence            9864 4799999999999999997655433 33333345688899987654 5554 445567889998754 4578899


Q ss_pred             cCCcceEEEEECCC-CCEEEEeeCCCcEEecC
Q psy15421        310 GHDNRVSCLGVTED-GMAVATGSWDSFLRIWN  340 (340)
Q Consensus       310 ~h~~~i~~~~~s~d-~~~l~s~s~D~~i~iW~  340 (340)
                      +|.+.|+.++|.|. ...|.||++|..+.|||
T Consensus       285 ~H~a~VNgIaWaPhS~~hictaGDD~qaliWD  316 (364)
T KOG0290|consen  285 NHQASVNGIAWAPHSSSHICTAGDDCQALIWD  316 (364)
T ss_pred             cCcccccceEecCCCCceeeecCCcceEEEEe
Confidence            99999999999995 46899999999999997

>KOG1009|consensus

Probab=99.77  E-value=4.6e-17  Score=136.10  Aligned_cols=193  Identities=24%  Similarity=0.339  Sum_probs=152.8

Q ss_pred             CCcEEEEEECCCCC-EEEEEeCCCeEEEEEccCCC-----CceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEE
Q psy15421         97 SSWVMTCAYAPSGS-FVACGGLDNICSIYSLKTRE-----GNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALW  169 (340)
Q Consensus        97 ~~~i~~v~~~~~~~-~l~~~~~d~~v~i~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iw  169 (340)
                      ..++.++.|.++.. .+++|+.|..|++|.+....     ..+.....+..|...|++++|++++ .+++|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            35788999998876 99999999999999886532     1344556678899999999998875 57778888999999


Q ss_pred             ECC--------C--------CceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEE
Q psy15421        170 DIE--------T--------GQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVT  233 (340)
Q Consensus       170 d~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~  233 (340)
                      -..        +        ......+.+|...+..++|+|++.++++|+.|..+++||+..|.....+..|...+..++
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva  172 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA  172 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence            765        2        112345567999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCEEEEEeCCCcEEEEeCcCCcEEEEee--------------------cCC-cccceEEEEEcCCCcEEEEEe
Q psy15421        234 FFPNGWAFATGSDDATCRLFDIRADQELAMYS--------------------HDN-IICGITSVAFSRSGRLLLAGY  289 (340)
Q Consensus       234 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--------------------~~~-~~~~i~~~~~s~~~~~l~~g~  289 (340)
                      |.|-++++++-+.|...+.+++...+......                    |+. ...=...++|+|+|.+|++..
T Consensus       173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence            99999999999999988877765433322111                    111 111135678999999999853

>KOG1007|consensus

Probab=99.76  E-value=5.9e-17  Score=129.95  Aligned_cols=173  Identities=21%  Similarity=0.304  Sum_probs=131.5

Q ss_pred             eEEEEECCCCce---------EEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-eeEec-----CCCCC
Q psy15421        165 SCALWDIETGQQ---------CASFI-GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC-KQTFP-----GHESD  228 (340)
Q Consensus       165 ~v~iwd~~~~~~---------~~~~~-~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~-~~~~~-----~h~~~  228 (340)
                      ...||.+.....         +..+. .+-+.+.|+-|.|++..+++- .|..|.+|++.++.. +..+.     +|...
T Consensus        94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~  172 (370)
T KOG1007|consen   94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHS  172 (370)
T ss_pred             eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe-ccCceEEEEcccCcchheeecccccccccce
Confidence            467998864321         12222 345689999999999888764 499999999987754 33332     24556


Q ss_pred             eEEEEEec--CCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCC-cEEEEEeCCCcEEEEeCCC-cee
Q psy15421        229 INAVTFFP--NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSG-RLLLAGYDDFNCNVWDSMK-TER  304 (340)
Q Consensus       229 v~~v~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~d~~i~iw~~~~-~~~  304 (340)
                      .++-+|+|  +|..+++.+ |+++..||+++.+....+ ...+...+..+.|+|+- .+|++|++||.|+|||.+. ..+
T Consensus       173 ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI-~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p  250 (370)
T KOG1007|consen  173 FTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSI-EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP  250 (370)
T ss_pred             ecccccCCCCccceEEEeC-CCcEEEEEccchhhhcch-hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc
Confidence            78889998  677777765 899999999976554333 23344568999999985 4788999999999999764 456


Q ss_pred             eeeeccCCcceEEEEECCCC-CEEEEeeCCCcEEecC
Q psy15421        305 AGILAGHDNRVSCLGVTEDG-MAVATGSWDSFLRIWN  340 (340)
Q Consensus       305 ~~~~~~h~~~i~~~~~s~d~-~~l~s~s~D~~i~iW~  340 (340)
                      +..+.+|..+|++|.|.|.. ++|+|||.|..|.+|.
T Consensus       251 v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc  287 (370)
T KOG1007|consen  251 VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC  287 (370)
T ss_pred             ccccCCCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence            88899999999999999954 6888999999999884

>KOG0642|consensus

Probab=99.76  E-value=2.7e-17  Score=142.82  Aligned_cols=215  Identities=15%  Similarity=0.169  Sum_probs=156.1

Q ss_pred             eeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCC------CCC----eeEEeeCCCCcEEEEEECCCCCEEE
Q psy15421         44 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSY------TTN----KVHAIPLRSSWVMTCAYAPSGSFVA  113 (340)
Q Consensus        44 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~------~~~----~~~~~~~~~~~i~~v~~~~~~~~l~  113 (340)
                      ......+|++|.++|.|+++.+++..+.+||.||+|+.|++-      +.-    ....+.+|.+.+..+++++...+|+
T Consensus       333 ~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll  412 (577)
T KOG0642|consen  333 DVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL  412 (577)
T ss_pred             ceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee
Confidence            445567899999999999999999999999999999999553      211    2345678999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC--eEEEEeCCCeEEEEECCCCceEEEEec-------CC
Q psy15421        114 CGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN--QIVTSSGDMSCALWDIETGQQCASFIG-------HT  184 (340)
Q Consensus       114 ~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~~-------~~  184 (340)
                      +++.|++++.|+...... + .......|.-+. .+.+....  ..++...-+.-.+++++..+....+..       ..
T Consensus       413 scs~DgTvr~w~~~~~~~-~-~f~~~~e~g~Pl-svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~  489 (577)
T KOG0642|consen  413 SCSSDGTVRLWEPTEESP-C-TFGEPKEHGYPL-SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRY  489 (577)
T ss_pred             eecCCceEEeeccCCcCc-c-ccCCccccCCcc-eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccccc
Confidence            999999999999764332 1 111111122221 12221111  112222223333444444444333321       11


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEE
Q psy15421        185 GDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL  261 (340)
Q Consensus       185 ~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~  261 (340)
                      ..+.-+..+|...+.+++..|+.|+++|..++..+.....|...++++++.|+|.+|++++.|+.+++|.+.....+
T Consensus       490 ~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  490 PQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             CccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence            34667888999999999999999999999999999999999999999999999999999999999999998765443

>KOG0322|consensus

Probab=99.76  E-value=2.5e-17  Score=130.49  Aligned_cols=245  Identities=18%  Similarity=0.231  Sum_probs=159.5

Q ss_pred             EEec-CccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEEC-----CCCC----EEEEEeCC
Q psy15421         49 RTLR-GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYA-----PSGS----FVACGGLD  118 (340)
Q Consensus        49 ~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~-----~~~~----~l~~~~~d  118 (340)
                      ..++ -|...|+.+.--|+ ..+.+-+.|+.+.+|++.-+.-+.   .|+-.+.++-|.     ++++    .++.=+..
T Consensus        49 ~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rg  124 (323)
T KOG0322|consen   49 PLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRG  124 (323)
T ss_pred             hhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcc
Confidence            4466 46778888887776 567889999999999986543221   122222222221     2211    11111100


Q ss_pred             C-eEEEEEccCCCCceEEEEeecCCCcceEEEEEc-C-CCe--EEEEeCCCeEEEEECCCC----------ceEEEEecC
Q psy15421        119 N-ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL-D-DNQ--IVTSSGDMSCALWDIETG----------QQCASFIGH  183 (340)
Q Consensus       119 ~-~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~-~~~--l~~~~~d~~v~iwd~~~~----------~~~~~~~~~  183 (340)
                      - .+.+-|.....+.........+..+.+.+..+. . ..+  +++|..+|.+.+||+.++          +.+.....|
T Consensus       125 sde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash  204 (323)
T KOG0322|consen  125 SDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASH  204 (323)
T ss_pred             cchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhc
Confidence            0 011111111000000001112344556555532 2 222  566778999999999987          333445679


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ee--eeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCc
Q psy15421        184 TGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG--SC--KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ  259 (340)
Q Consensus       184 ~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~--~~--~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  259 (340)
                      ..+|+++.+.+....=++|+.+..+..|.++..  .+  .....-....|..+.+.||++.+||++.|+.||+|..++.+
T Consensus       205 ~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~  284 (323)
T KOG0322|consen  205 KQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN  284 (323)
T ss_pred             cCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC
Confidence            999999999988777789999999999987643  21  11121122357889999999999999999999999999999


Q ss_pred             EEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeC
Q psy15421        260 ELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       260 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~  299 (340)
                      ++..+...  ..+|++++|+|+..++|+++.|++|.+|++
T Consensus       285 pLAVLkyH--sagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  285 PLAVLKYH--SAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             chhhhhhh--hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            98876533  257999999999999999999999999985

>KOG1188|consensus

Probab=99.75  E-value=5.6e-17  Score=132.86  Aligned_cols=185  Identities=21%  Similarity=0.322  Sum_probs=144.8

Q ss_pred             CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCee--eeEecCCC-CCe
Q psy15421        155 NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAP--DMRTFVSGACDASAKLWDIRDGSC--KQTFPGHE-SDI  229 (340)
Q Consensus       155 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~sg~~dg~i~~wd~~~~~~--~~~~~~h~-~~v  229 (340)
                      ..++++.+.|+|++||..+++.+..+.++...++.+.|..  ....+++|+.||+||+||+|+...  +..+..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4577888999999999999999999999999999999976  345788999999999999998654  33445555 466


Q ss_pred             EEEEEecCCCEEEEEeC----CCcEEEEeCcCCcE-EEEeecCCcccceEEEEEcCCC-cEEEEEeCCCcEEEEeCCCce
Q psy15421        230 NAVTFFPNGWAFATGSD----DATCRLFDIRADQE-LAMYSHDNIICGITSVAFSRSG-RLLLAGYDDFNCNVWDSMKTE  303 (340)
Q Consensus       230 ~~v~~~~~~~~l~s~s~----d~~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~d~~i~iw~~~~~~  303 (340)
                      .+++....+..+++|..    |-.+.+||++..+. +..+ .+.+...|+++.|+|.. .+|++|+.||.|.+||....+
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~-~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL-NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh-hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            77777666778888753    67899999997665 4443 23445569999999964 689999999999999976543


Q ss_pred             ee---eeeccCCcceEEEEECCCC-CEEEEeeCCCcEEecC
Q psy15421        304 RA---GILAGHDNRVSCLGVTEDG-MAVATGSWDSFLRIWN  340 (340)
Q Consensus       304 ~~---~~~~~h~~~i~~~~~s~d~-~~l~s~s~D~~i~iW~  340 (340)
                      ..   .....|...|.++.|..++ ..|..-+++.+..+|+
T Consensus       200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~e  240 (376)
T KOG1188|consen  200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYE  240 (376)
T ss_pred             chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEE
Confidence            22   2233577889999998887 4577788888888885

>KOG2394|consensus

Probab=99.75  E-value=6e-17  Score=139.94  Aligned_cols=200  Identities=21%  Similarity=0.248  Sum_probs=136.9

Q ss_pred             CCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC--CCeEEEEeCCCeEEEEECCCCceEEEEecC
Q psy15421        106 APSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD--DNQIVTSSGDMSCALWDIETGQQCASFIGH  183 (340)
Q Consensus       106 ~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~  183 (340)
                      .|.+--+..|..-+.+.+.+....+-.........-....+.++.|.+  ++.++.+-.+|.+.+||....-      +.
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------~~  255 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------GA  255 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc------cC
Confidence            456777888888888888876542211101111112346788898864  4567778889999999873210      00


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEE
Q psy15421        184 TGDVMSLSLAPDMRTFVSGACDASAKLWDIR-DGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELA  262 (340)
Q Consensus       184 ~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  262 (340)
                      +  -.+-...+++..|..       ..|.-. +..++..+.--++.|+..+|+|||++||+.|.||.+||||+.+.+.+.
T Consensus       256 t--~p~~~~~k~~~~f~i-------~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg  326 (636)
T KOG2394|consen  256 T--APSYQALKDGDQFAI-------LTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG  326 (636)
T ss_pred             C--CCcccccCCCCeeEE-------eeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH
Confidence            0  011112234444432       122111 112333443344589999999999999999999999999998766554


Q ss_pred             EeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECC
Q psy15421        263 MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTE  322 (340)
Q Consensus       263 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~  322 (340)
                      .+  ..+-.++.|++|||||+||++|+.|-.|.||.....+.+..-.+|..+|+.|+|.|
T Consensus       327 ~m--kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  327 VM--KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             HH--HhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            32  23345689999999999999999999999999999999999999999999999983

>KOG0644|consensus

Probab=99.74  E-value=4.2e-18  Score=153.84  Aligned_cols=232  Identities=22%  Similarity=0.361  Sum_probs=181.1

Q ss_pred             EeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEE
Q psy15421         92 AIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWD  170 (340)
Q Consensus        92 ~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd  170 (340)
                      .+.+|-.+|+|+.|...|.++++|+.|..++||.+.+..    ....++||++.+..++-+.++ .+++++.|..|++|-
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~----~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR----CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchh----hhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            345788899999999999999999999999999976653    556789999999887776555 577889999999999


Q ss_pred             CCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEe----cC-CCCCeEEEEEecCCCEEEEEe
Q psy15421        171 IETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTF----PG-HESDINAVTFFPNGWAFATGS  245 (340)
Q Consensus       171 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~----~~-h~~~v~~v~~~~~~~~l~s~s  245 (340)
                      +..+.++..+.+|++.|++++|+|-.    +.+.||++++||.+- ..+...    +. ....+.++-|..++..++||+
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCCCCcccccceeeeecccccccccccc
Confidence            99999999999999999999999954    778999999999882 111111    11 123456677777888999999


Q ss_pred             CCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCC-CcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCC
Q psy15421        246 DDATCRLFDIRADQELAMYSHDNIICGITSVAFSRS-GRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDG  324 (340)
Q Consensus       246 ~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~  324 (340)
                      .|+.-..|.+......     ..   .+.-+.++.+ ..+.+++-.+-.+.+|++.++.....+.+|.+.++.+.++|-.
T Consensus       336 ~d~ea~n~e~~~l~~~-----~~---~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn  407 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLAWR-----SN---LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN  407 (1113)
T ss_pred             CCcccccchhhHhhhh-----cc---ceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence            9999888876432110     00   0111222222 3566777788889999999999999999999999999999955


Q ss_pred             -CEEEEeeCCCcEEecC
Q psy15421        325 -MAVATGSWDSFLRIWN  340 (340)
Q Consensus       325 -~~l~s~s~D~~i~iW~  340 (340)
                       ....+++.||...|||
T Consensus       408 ~ri~msag~dgst~iwd  424 (1113)
T KOG0644|consen  408 PRIAMSAGYDGSTIIWD  424 (1113)
T ss_pred             cHhhhhccCCCceEeee
Confidence             4556999999999997

>KOG0290|consensus

Probab=99.74  E-value=4.8e-16  Score=124.91  Aligned_cols=233  Identities=15%  Similarity=0.257  Sum_probs=169.7

Q ss_pred             CccCcEEEEEEcCCCC-----eEEEEeCCCeEEEEeCCCCCee---------EEeeCCCCcEEEEEECC-CCCEEEEEeC
Q psy15421         53 GHLAKIYAMHWGSDSR-----NLVSASQDGKLIVWDSYTTNKV---------HAIPLRSSWVMTCAYAP-SGSFVACGGL  117 (340)
Q Consensus        53 ~h~~~v~~~~~s~~~~-----~l~s~~~d~~i~iwd~~~~~~~---------~~~~~~~~~i~~v~~~~-~~~~l~~~~~  117 (340)
                      .|.-+++.+-|.|+..     +|||+ .| .+|+|.+...+..         .....+..++++..|.. +-+++.+++-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs-~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATS-SD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcc-cC-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            5777899999999863     45543 33 7999987632211         11123445677777764 6789999999


Q ss_pred             CCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCceEEEEec---CCCCeEEEEE
Q psy15421        118 DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQCASFIG---HTGDVMSLSL  192 (340)
Q Consensus       118 d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~~~~~  192 (340)
                      |-+|.|||+..+. ...+...+-+|...|..+.|..+  +.|++++.||+|+++|++.-+....+..   ...+...++|
T Consensus       172 DTTCTiWdie~~~-~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  172 DTTCTIWDIETGV-SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             cCeEEEEEEeecc-ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            9999999998752 22234556789999999999875  4689999999999999987665444432   2346778888


Q ss_pred             cCCC-CEEEEE-eCCCcEEEEECCCC-eeeeEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCCcE------EE
Q psy15421        193 APDM-RTFVSG-ACDASAKLWDIRDG-SCKQTFPGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQE------LA  262 (340)
Q Consensus       193 ~~~~-~~~~sg-~~dg~i~~wd~~~~-~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~~------~~  262 (340)
                      ++.. +++++- -....|.+.|+|.. ..+..+++|.+.|++++|.|. ..+++|++.|..+.|||+.+...      +.
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil  330 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL  330 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence            8754 566664 44578999999975 457889999999999999996 56899999999999999875322      11


Q ss_pred             EeecCCcccceEEEEEcCC-CcEEEEEeCC
Q psy15421        263 MYSHDNIICGITSVAFSRS-GRLLLAGYDD  291 (340)
Q Consensus       263 ~~~~~~~~~~i~~~~~s~~-~~~l~~g~~d  291 (340)
                      .+.   ....|+.+.|+|. ...+++++.+
T Consensus       331 ay~---a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  331 AYT---AGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             hhh---ccceeeeeeecccCCCEEEEEecC
Confidence            121   2345899999864 5677776654

>KOG1445|consensus

Probab=99.74  E-value=7.5e-17  Score=141.97  Aligned_cols=231  Identities=17%  Similarity=0.264  Sum_probs=157.1

Q ss_pred             CCCCEEEE--EeCCCeEEEEEccCCCCceEEEEeec--CCCcceEEEEEc--CCCeEEEEeCCCeEEEEECCCC------
Q psy15421        107 PSGSFVAC--GGLDNICSIYSLKTREGNVRVSRELP--GHTGYLSCCRFL--DDNQIVTSSGDMSCALWDIETG------  174 (340)
Q Consensus       107 ~~~~~l~~--~~~d~~v~i~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~--~~~~l~~~~~d~~v~iwd~~~~------  174 (340)
                      .+..++|.  ++..|.|-||+++......  ...++  -+...|..+.|.  ++.+|+.++.||.|++|.+..+      
T Consensus       589 an~~rvAVPL~g~gG~iai~el~~PGrLP--Dgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~  666 (1012)
T KOG1445|consen  589 ANNKRVAVPLAGSGGVIAIYELNEPGRLP--DGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE  666 (1012)
T ss_pred             eccceEEEEecCCCceEEEEEcCCCCCCC--cccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence            34445443  5678899999997643211  11111  134456777775  4568999999999999998654      


Q ss_pred             -ceEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q psy15421        175 -QQCASFIGHTGDVMSLSLAPD-MRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRL  252 (340)
Q Consensus       175 -~~~~~~~~~~~~v~~~~~~~~-~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~i  252 (340)
                       .....+..|...|+++.|+|- ...+++++.|-+|++||+++.+....+.+|.+.|..++|+|+|+.+|+.+.||+|++
T Consensus       667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rV  746 (1012)
T KOG1445|consen  667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRV  746 (1012)
T ss_pred             CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEE
Confidence             234567789999999999994 457889999999999999999988899999999999999999999999999999999


Q ss_pred             EeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCC----CcEEEEeCCCce--eeeeeccCCcc-eEEEEECCCCC
Q psy15421        253 FDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD----FNCNVWDSMKTE--RAGILAGHDNR-VSCLGVTEDGM  325 (340)
Q Consensus       253 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d----~~i~iw~~~~~~--~~~~~~~h~~~-i~~~~~s~d~~  325 (340)
                      |.-++.......+.......-..+.|.-+|+++++.+.|    +.|.+||..+..  .+.+..-...+ +.-=.+.+|.+
T Consensus       747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~  826 (1012)
T KOG1445|consen  747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSN  826 (1012)
T ss_pred             eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCc
Confidence            998765432221111112233467788899998876655    457777754432  11111000000 00012334443


Q ss_pred             -EEEEeeCCCcEEec
Q psy15421        326 -AVATGSWDSFLRIW  339 (340)
Q Consensus       326 -~l~s~s~D~~i~iW  339 (340)
                       ++++|-.|.+|.++
T Consensus       827 ~lfltGKGD~~v~~y  841 (1012)
T KOG1445|consen  827 VLFLTGKGDRFVNMY  841 (1012)
T ss_pred             eEEEecCCCceEEEE
Confidence             45677777777665

>KOG1310|consensus

Probab=99.74  E-value=5e-17  Score=140.78  Aligned_cols=223  Identities=23%  Similarity=0.410  Sum_probs=160.9

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEee-CCCCcEEEEEECC--CCCEEEEEeCCCeEEE
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP-LRSSWVMTCAYAP--SGSFVACGGLDNICSI  123 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~~--~~~~l~~~~~d~~v~i  123 (340)
                      ..+.|.||++.|.++.|+.+|.+|+|||.|-.+.|||....+.++.+. +|...|.++.|-|  +...+++|..|+.|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            346789999999999999999999999999999999999888887775 7888899999988  4667888999999999


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCC-CEEEEE
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDM-RTFVSG  202 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~sg  202 (340)
                      +|+....+...                  +.+                 .......+..|...|..++..|++ ..+-++
T Consensus       122 fdl~~~~~~~~------------------d~~-----------------~~~~~~~~~cht~rVKria~~p~~Phtfwsa  166 (758)
T KOG1310|consen  122 FDLDSSKEGGM------------------DHG-----------------MEETTRCWSCHTDRVKRIATAPNGPHTFWSA  166 (758)
T ss_pred             Eeccccccccc------------------ccC-----------------ccchhhhhhhhhhhhhheecCCCCCceEEEe
Confidence            98864221100                  000                 012233445688888888989988 678899


Q ss_pred             eCCCcEEEEECCCCee-eeEe---------cCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCCc------------
Q psy15421        203 ACDASAKLWDIRDGSC-KQTF---------PGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQ------------  259 (340)
Q Consensus       203 ~~dg~i~~wd~~~~~~-~~~~---------~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~------------  259 (340)
                      +.||+|+-+|+++... ....         ...--...|++++|. ..+||.|+.|...++||.+...            
T Consensus       167 sEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~  246 (758)
T KOG1310|consen  167 SEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTC  246 (758)
T ss_pred             cCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCC
Confidence            9999999999987431 1111         111124578999986 5689999999999999943210            


Q ss_pred             ------EEEEeecCC----------cccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCcee
Q psy15421        260 ------ELAMYSHDN----------IICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTER  304 (340)
Q Consensus       260 ------~~~~~~~~~----------~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~  304 (340)
                            .+..|....          .....+-+.|+|+|.-|++.-..-.|+++|+...+.
T Consensus       247 pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~  307 (758)
T KOG1310|consen  247 PPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS  307 (758)
T ss_pred             CCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence                  011111110          111257789999999888877777899999866554

>KOG2110|consensus

Probab=99.74  E-value=7.2e-15  Score=121.81  Aligned_cols=229  Identities=14%  Similarity=0.132  Sum_probs=163.3

Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEe--CCCeEEEEECCCCce
Q psy15421         99 WVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSS--GDMSCALWDIETGQQ  176 (340)
Q Consensus        99 ~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~  176 (340)
                      .+....|..+...|..|+.||. ++|....-+.   .. ........+.-..|+ ...++..+  ..+.+++++.+.+..
T Consensus         7 ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k---~~-~~~~~~~~IvEmLFS-SSLvaiV~~~qpr~Lkv~~~Kk~~~   80 (391)
T KOG2110|consen    7 TINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK---CF-SKDTEGVSIVEMLFS-SSLVAIVSIKQPRKLKVVHFKKKTT   80 (391)
T ss_pred             ceeeeeeccceeEEEccCCCce-eEEecCchHH---hh-cccCCCeEEEEeecc-cceeEEEecCCCceEEEEEcccCce
Confidence            3455568888888999999986 7777654221   00 001111122223333 33333333  345699999988776


Q ss_pred             EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEec---CCCCCeEEEEEecCCCEEEEE--eCCCcEE
Q psy15421        177 CASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP---GHESDINAVTFFPNGWAFATG--SDDATCR  251 (340)
Q Consensus       177 ~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s~--s~d~~i~  251 (340)
                      +..+. ...+|.++.++.+  +++.+-.+ .|.+||+++-+++.++.   .+...+.++++++.+.++|-=  -..|.|.
T Consensus        81 ICe~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   81 ICEIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV  156 (391)
T ss_pred             EEEEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence            66554 3456889988753  56655544 49999999988877653   455567777777777788743  3368999


Q ss_pred             EEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCc-EEEEeCCCceeeeeeccC--CcceEEEEECCCCCEEE
Q psy15421        252 LFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN-CNVWDSMKTERAGILAGH--DNRVSCLGVTEDGMAVA  328 (340)
Q Consensus       252 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~-i~iw~~~~~~~~~~~~~h--~~~i~~~~~s~d~~~l~  328 (340)
                      +||..+.++...+.  .+...+.+++|+|+|.+||++++.|+ ||+|...++..+..++--  .-.|.+++|+||+++|+
T Consensus       157 l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~  234 (391)
T KOG2110|consen  157 LFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLA  234 (391)
T ss_pred             EEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence            99999888877664  44557999999999999999999987 699999999998887643  34688999999999999


Q ss_pred             EeeCCCcEEec
Q psy15421        329 TGSWDSFLRIW  339 (340)
Q Consensus       329 s~s~D~~i~iW  339 (340)
                      +.|.-++|.|+
T Consensus       235 ~sS~TeTVHiF  245 (391)
T KOG2110|consen  235 ASSNTETVHIF  245 (391)
T ss_pred             EecCCCeEEEE
Confidence            99999999986

>KOG1523|consensus

Probab=99.74  E-value=2.2e-16  Score=128.43  Aligned_cols=196  Identities=18%  Similarity=0.245  Sum_probs=156.3

Q ss_pred             CcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCc---eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-
Q psy15421        143 TGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQ---QCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS-  217 (340)
Q Consensus       143 ~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~-  217 (340)
                      ..++.|.+|..+. +++.+.....|.||.....+   ...++..|...|+.++|.|..+.|++|+.|..-.+|....+. 
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            3467888887665 67778888899999987654   567888899999999999999999999999999999984432 


Q ss_pred             --eeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecC--CcccceEEEEEcCCCcEEEEEeCCCc
Q psy15421        218 --CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHD--NIICGITSVAFSRSGRLLLAGYDDFN  293 (340)
Q Consensus       218 --~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~g~~d~~  293 (340)
                        ....+..+....++|.|+|.+..||+||.-+.|.+|-++....-....|.  .....|+++.|+|++-+|++|+.|+.
T Consensus        90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k  169 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK  169 (361)
T ss_pred             eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence              33445668889999999999999999999999999988765443222221  22345899999999999999999999


Q ss_pred             EEEEeCC-----C-------------ceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        294 CNVWDSM-----K-------------TERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       294 i~iw~~~-----~-------------~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      +|+|...     .             +..+.++....+.|..+.|+|+|..|+=.++|+++.+
T Consensus       170 ~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~  232 (361)
T KOG1523|consen  170 CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSF  232 (361)
T ss_pred             eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEE
Confidence            9999631     0             1122234455688999999999999999999999865

>KOG1963|consensus

Probab=99.73  E-value=2.9e-15  Score=136.60  Aligned_cols=250  Identities=18%  Similarity=0.231  Sum_probs=176.3

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccC
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKT  128 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~  128 (340)
                      +.|.-|.++|.+++|+++|.+|.|||..|.+.+|...+++ ...++--.++|..+.++||+.+.+....|+.+.+.....
T Consensus       245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d  323 (792)
T KOG1963|consen  245 TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD  323 (792)
T ss_pred             eEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence            5688999999999999999999999999999999999888 455666678899999999999999999999999887754


Q ss_pred             CCCceEEEEeecC-------CCcceEEEEEcC-CCeEEEEeCCCeEEEEECCCCceEEEEec-----CCC------CeEE
Q psy15421        129 REGNVRVSRELPG-------HTGYLSCCRFLD-DNQIVTSSGDMSCALWDIETGQQCASFIG-----HTG------DVMS  189 (340)
Q Consensus       129 ~~~~~~~~~~~~~-------~~~~v~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~------~v~~  189 (340)
                      -..+..+....+.       ..+....++..+ .+.++..+..+.|.+||+.+.+.+..+..     +.+      .+.+
T Consensus       324 l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~ita  403 (792)
T KOG1963|consen  324 LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITA  403 (792)
T ss_pred             hhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeee
Confidence            3322222111111       233344455555 46677888899999999988776655431     222      3566


Q ss_pred             EEEcCCCCEEEEEe--------CC--CcEEEEECCCCeee-----eEecCCCCCeEEEEEecC-C-CEEEEEeCCCcEEE
Q psy15421        190 LSLAPDMRTFVSGA--------CD--ASAKLWDIRDGSCK-----QTFPGHESDINAVTFFPN-G-WAFATGSDDATCRL  252 (340)
Q Consensus       190 ~~~~~~~~~~~sg~--------~d--g~i~~wd~~~~~~~-----~~~~~h~~~v~~v~~~~~-~-~~l~s~s~d~~i~i  252 (340)
                      ++.+..+..++|.-        .|  -.+|+|........     ....+|+..+...++.+. . ..+++++.||.++|
T Consensus       404 v~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~Ki  483 (792)
T KOG1963|consen  404 VARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKI  483 (792)
T ss_pred             ehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEE
Confidence            77777787777653        23  34678976543321     223568877766666543 2 37999999999999


Q ss_pred             EeCcCCcEE---------EEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCC
Q psy15421        253 FDIRADQEL---------AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       253 wd~~~~~~~---------~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~  301 (340)
                      |-+...+..         ....+ -+..++++++|+.||..|+++. +++|.+||-.+
T Consensus       484 W~~~~~~n~~k~~s~W~c~~i~s-y~k~~i~a~~fs~dGslla~s~-~~~Itiwd~~~  539 (792)
T KOG1963|consen  484 WVFTDDSNIYKKSSNWTCKAIGS-YHKTPITALCFSQDGSLLAVSF-DDTITIWDYDT  539 (792)
T ss_pred             EEEecccccCcCccceEEeeeec-cccCcccchhhcCCCcEEEEec-CCEEEEecCCC
Confidence            987332111         11111 1234688999999997777665 55899999776

>KOG4227|consensus

Probab=99.72  E-value=7.6e-16  Score=128.50  Aligned_cols=249  Identities=16%  Similarity=0.144  Sum_probs=178.9

Q ss_pred             EEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCC---CceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeE
Q psy15421         91 HAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTRE---GNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSC  166 (340)
Q Consensus        91 ~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v  166 (340)
                      ..+..|-+.|..+.|+.++.+|++|+.|..+++|.+...-   ....+...-..|.+.+.++.|...+ .+.+|..+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            3456788999999999999999999999999999986411   1001222224577889999997655 57788899999


Q ss_pred             EEEECCCCceEEEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee---eeEecCCCCCeEEEEEecC-CCE
Q psy15421        167 ALWDIETGQQCASFIG--HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC---KQTFPGHESDINAVTFFPN-GWA  240 (340)
Q Consensus       167 ~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~---~~~~~~h~~~v~~v~~~~~-~~~  240 (340)
                      .+.|+++.+.+..+..  ..+.|..+..+|..+.|++.+.+|.|.+||.+....   ......-.....++.|+|. ...
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            9999999887766532  234899999999999999999999999999987541   1122223455778899996 457


Q ss_pred             EEEEeCCCcEEEEeCcCCcE-EEEee----cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCC---
Q psy15421        241 FATGSDDATCRLFDIRADQE-LAMYS----HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHD---  312 (340)
Q Consensus       241 l~s~s~d~~i~iwd~~~~~~-~~~~~----~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~---  312 (340)
                      +++.+..+-+-+||.+..+. +..+.    .......-..+.|+|.|..+.+--...-=.+||..+..+...-..|.   
T Consensus       210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G  289 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG  289 (609)
T ss_pred             EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence            78888889999999985432 21111    11111223578999999988775444444567776655544333332   


Q ss_pred             ----cceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        313 ----NRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       313 ----~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                          ..|.+++|..|-. +++||.+=.|.+|.
T Consensus       290 Y~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wk  320 (609)
T KOG4227|consen  290 YCNIKTIKSMTFIDDYT-VATGSDHWGIHIWK  320 (609)
T ss_pred             ceeeeeeeeeeeeccee-eeccCcccceEEEe
Confidence                2467788887765 99999999999994

>KOG1272|consensus

Probab=99.71  E-value=3.3e-17  Score=139.17  Aligned_cols=257  Identities=19%  Similarity=0.267  Sum_probs=195.9

Q ss_pred             EEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEe
Q psy15421         59 YAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRE  138 (340)
Q Consensus        59 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~  138 (340)
                      +.+.++.+|.+++-|+.-|.|-.+|..+.+....+... ..|.++.|-.+..++|++- .+-+.|||-...+  +..   
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtE--lHC---  205 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTE--LHC---  205 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhhh-hceEEEecCCCcE--Eee---
Confidence            67889999999999999999999999999887777654 4488889999888888664 4557888853211  111   


Q ss_pred             ecCCCcceEEEEEcCCCe-EEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q psy15421        139 LPGHTGYLSCCRFLDDNQ-IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS  217 (340)
Q Consensus       139 ~~~~~~~v~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~  217 (340)
                      +. ....|..+.|.+-.. |++++..|.++.-|+.+|+.+..+..-.+.+..|+-+|-...+-+|...|+|.+|...+.+
T Consensus       206 lk-~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske  284 (545)
T KOG1272|consen  206 LK-RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE  284 (545)
T ss_pred             hh-hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence            11 223456666766654 5667778999999999999988887777888899999988888899999999999998888


Q ss_pred             eeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEE
Q psy15421        218 CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW  297 (340)
Q Consensus       218 ~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw  297 (340)
                      ++..+-.|.++|.+|++.++|.|+||.+.|..++|||++....+..+...   .+...++||.-| +||+|..+ .+.||
T Consensus       285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkg-lLA~~~G~-~v~iw  359 (545)
T KOG1272|consen  285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP---HPASNLSLSQKG-LLALSYGD-HVQIW  359 (545)
T ss_pred             hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC---CCcccccccccc-ceeeecCC-eeeee
Confidence            77777789999999999999999999999999999999977666555432   235677887654 44555444 59999


Q ss_pred             eCC-C--ceeeeeeccC--CcceEEEEECCCCCEEE
Q psy15421        298 DSM-K--TERAGILAGH--DNRVSCLGVTEDGMAVA  328 (340)
Q Consensus       298 ~~~-~--~~~~~~~~~h--~~~i~~~~~s~d~~~l~  328 (340)
                      .-. .  +.....+..|  .++|..|.|.|-...|-
T Consensus       360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLG  395 (545)
T KOG1272|consen  360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLG  395 (545)
T ss_pred             hhhhcCCCCCCcchhhhccCcccccceeccHHHeee
Confidence            632 2  2333344455  35888898988655443

>KOG2321|consensus

Probab=99.71  E-value=6.7e-15  Score=128.40  Aligned_cols=275  Identities=15%  Similarity=0.184  Sum_probs=195.4

Q ss_pred             CccCcEEEEEEcCCCCeEE-EEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCC
Q psy15421         53 GHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREG  131 (340)
Q Consensus        53 ~h~~~v~~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~  131 (340)
                      +|....+.+..+|||++++ ||-.-..|++||+.+-.....-......|.-.-.+.|-..++.-..|.+|.+-..   .+
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak---~G  125 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK---YG  125 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh---cC
Confidence            5777889999999999865 5566889999998765544333333344444444555444555556666544321   11


Q ss_pred             ceEEEEeecCCCcceEEEEEc-CCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q psy15421        132 NVRVSRELPGHTGYLSCCRFL-DDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKL  210 (340)
Q Consensus       132 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~  210 (340)
                      .. ....+|..   -..++++ +...|+.++....|.-.+++.|.-+..+....+.++++.+++...++++|+.||.|-+
T Consensus       126 ~h-y~~RIP~~---GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEf  201 (703)
T KOG2321|consen  126 RH-YRTRIPKF---GRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEF  201 (703)
T ss_pred             ee-eeeecCcC---CccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEE
Confidence            11 11111111   1122333 3345666777778888999999988888888889999999999999999999999999


Q ss_pred             EECCCCeeeeEec------CCCC-----CeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEc
Q psy15421        211 WDIRDGSCKQTFP------GHES-----DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS  279 (340)
Q Consensus       211 wd~~~~~~~~~~~------~h~~-----~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  279 (340)
                      ||.+....+..+.      .|.+     .|+++.|+.+|-.++.|..+|.+.|||++..+++....|.. ..+|..+.|.
T Consensus       202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~-e~pi~~l~~~  280 (703)
T KOG2321|consen  202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY-ELPIKKLDWQ  280 (703)
T ss_pred             ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC-ccceeeeccc
Confidence            9998765544432      2333     49999999999999999999999999999988877655543 4568899996


Q ss_pred             CC--CcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEE
Q psy15421        280 RS--GRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLR  337 (340)
Q Consensus       280 ~~--~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~  337 (340)
                      +.  ++.++ ..+...++|||-.+++.+..+.. ...++.+++-|++.++++|-.++.|.
T Consensus       281 ~~~~q~~v~-S~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~  338 (703)
T KOG2321|consen  281 DTDQQNKVV-SMDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMH  338 (703)
T ss_pred             ccCCCceEE-ecchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcce
Confidence            65  33444 45667899999989988776643 44599999999998888887766543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=2.9e-15  Score=135.75  Aligned_cols=221  Identities=19%  Similarity=0.210  Sum_probs=147.1

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCC---CeEEEEeCCCCCee--EEeeCCCCcEEEEEECCCCCEEEEEe-CCCeE
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQD---GKLIVWDSYTTNKV--HAIPLRSSWVMTCAYAPSGSFVACGG-LDNIC  121 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~--~~~~~~~~~i~~v~~~~~~~~l~~~~-~d~~v  121 (340)
                      .+.+..|...+.+.+|+|||+.|+.++.+   ..|++||+.+++..  ...+.+   ....+|+|||++|+.+. .++..
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~  272 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVL  272 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcE
Confidence            45677888899999999999999987654   46999999877542  223333   34678999999888764 67877


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCCCe-EEEEe-CCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEE
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSS-GDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTF  199 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  199 (340)
                      .||.+....+..   ..+..+...+....|++++. ++.++ .++...+|++...........+..  ....|+|+++.+
T Consensus       273 ~Iy~~d~~~~~~---~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~i  347 (429)
T PRK01742        273 NIYVMGANGGTP---SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTL  347 (429)
T ss_pred             EEEEEECCCCCe---EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEE
Confidence            777654333322   22334555566677887764 55444 467888887643221112223433  457899999999


Q ss_pred             EEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCc--CCcEEEEeecCCcccceEEEE
Q psy15421        200 VSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIR--ADQELAMYSHDNIICGITSVA  277 (340)
Q Consensus       200 ~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~--~~~~~~~~~~~~~~~~i~~~~  277 (340)
                      +..+.++ +.+||+.++........+  ....+.|+|+|++++.++.++.+++|.+.  .++....+.  .+...+...+
T Consensus       348 a~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~--~~~g~~~~p~  422 (429)
T PRK01742        348 VMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP--GSDGQVKFPA  422 (429)
T ss_pred             EEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc--CCCCCCCCcc
Confidence            8877765 555999888654332222  23567899999999999999998888753  344444332  1223466778


Q ss_pred             EcCC
Q psy15421        278 FSRS  281 (340)
Q Consensus       278 ~s~~  281 (340)
                      |+|-
T Consensus       423 wsp~  426 (429)
T PRK01742        423 WSPY  426 (429)
T ss_pred             cCCC
Confidence            8874

>KOG1445|consensus

Probab=99.69  E-value=1.5e-15  Score=133.80  Aligned_cols=240  Identities=15%  Similarity=0.258  Sum_probs=168.3

Q ss_pred             cCCCCeEE--EEeCCCeEEEEeCCCCCee-EE-ee--CCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEccCCCCc---e
Q psy15421         64 GSDSRNLV--SASQDGKLIVWDSYTTNKV-HA-IP--LRSSWVMTCAYAP-SGSFVACGGLDNICSIYSLKTREGN---V  133 (340)
Q Consensus        64 s~~~~~l~--s~~~d~~i~iwd~~~~~~~-~~-~~--~~~~~i~~v~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~---~  133 (340)
                      +.+...++  -.|.-|.|-|+++.....+ .. ++  .....|..+.|.| |...||.++.|+.|++|.+..++..   .
T Consensus       588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~  667 (1012)
T KOG1445|consen  588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM  667 (1012)
T ss_pred             eeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC
Confidence            33444444  2356789999998643322 11 11  2245688899998 6788999999999999998764432   2


Q ss_pred             EEEEeecCCCcceEEEEEcC--CCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q psy15421        134 RVSRELPGHTGYLSCCRFLD--DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLW  211 (340)
Q Consensus       134 ~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~w  211 (340)
                      .....+.+|...+.++.|++  .+.|++++.|.+|++||+.+++.-..+.+|.+.|..++|+|+|+.+++.+.||+|++|
T Consensus       668 tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy  747 (1012)
T KOG1445|consen  668 TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVY  747 (1012)
T ss_pred             CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEe
Confidence            23345678999999999986  4678899999999999999999889999999999999999999999999999999999


Q ss_pred             ECCCCee-eeEecCC-CCCeEEEEEecCCCEEEEEeCCC----cEEEEeCcCC--cEEEEeecCCcccceEEEEEcCC-C
Q psy15421        212 DIRDGSC-KQTFPGH-ESDINAVTFFPNGWAFATGSDDA----TCRLFDIRAD--QELAMYSHDNIICGITSVAFSRS-G  282 (340)
Q Consensus       212 d~~~~~~-~~~~~~h-~~~v~~v~~~~~~~~l~s~s~d~----~i~iwd~~~~--~~~~~~~~~~~~~~i~~~~~s~~-~  282 (340)
                      +.+++.. +..-++. +.+-..|.|.-+|++++..+.|+    .|.+||....  .++.....+... ++.--.+.+| +
T Consensus       748 ~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap-s~LvP~YD~Ds~  826 (1012)
T KOG1445|consen  748 EPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP-SPLVPHYDYDSN  826 (1012)
T ss_pred             CCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC-ccccccccCCCc
Confidence            9887642 2222221 12334577888999988877664    4677775432  222222111111 1111234555 4


Q ss_pred             cEEEEEeCCCcEEEEeCCCcee
Q psy15421        283 RLLLAGYDDFNCNVWDSMKTER  304 (340)
Q Consensus       283 ~~l~~g~~d~~i~iw~~~~~~~  304 (340)
                      .++++|-.|..|+.|++...++
T Consensus       827 ~lfltGKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  827 VLFLTGKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             eEEEecCCCceEEEEEecCCCc
Confidence            5677888999999999765444

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.69  E-value=2.7e-13  Score=119.44  Aligned_cols=286  Identities=16%  Similarity=0.150  Sum_probs=175.9

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEe-CCCeEEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGG-LDNICSIY  124 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~-~d~~v~i~  124 (340)
                      +...++......-..+.|+||++++..++.||.|.++|+.+.+.+.+++.... ...+++++||++++++. ..+.+.++
T Consensus        27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~  105 (369)
T PF02239_consen   27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVI  105 (369)
T ss_dssp             SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred             eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEe
Confidence            34456654444445578999999999999999999999999999988876544 57899999999998775 67899999


Q ss_pred             EccCCCCceEEEEeecC-------CCcceEEEEEcCCC-eEEEEeC-CCeEEEEECCCCceE-EEEecCCCCeEEEEEcC
Q psy15421        125 SLKTREGNVRVSRELPG-------HTGYLSCCRFLDDN-QIVTSSG-DMSCALWDIETGQQC-ASFIGHTGDVMSLSLAP  194 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~-~l~~~~~-d~~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~  194 (340)
                      |..+.+.    ...++.       ..+.+..+..++.. .++..-. .+.|.+-|....+.. ..............|+|
T Consensus       106 D~~tle~----v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp  181 (369)
T PF02239_consen  106 DAETLEP----VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP  181 (369)
T ss_dssp             ETTT--E----EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred             ccccccc----eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc
Confidence            9876432    222221       23445555544443 3555444 578888887655433 23333455677899999


Q ss_pred             CCCEEEEE-eCCCcEEEEECCCCeeeeEec----CCCCCeEEEEEecC----------CCEEEEEeCCCcEEEEeCcCCc
Q psy15421        195 DMRTFVSG-ACDASAKLWDIRDGSCKQTFP----GHESDINAVTFFPN----------GWAFATGSDDATCRLFDIRADQ  259 (340)
Q Consensus       195 ~~~~~~sg-~~dg~i~~wd~~~~~~~~~~~----~h~~~v~~v~~~~~----------~~~l~s~s~d~~i~iwd~~~~~  259 (340)
                      ++++++.+ ..++.|-++|.++++.+..+.    .|..++..+ .+|.          +...++.-....+.+||....+
T Consensus       182 dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk  260 (369)
T PF02239_consen  182 DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK  260 (369)
T ss_dssp             TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS
T ss_pred             ccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCe
Confidence            99987764 467899999999988766542    244444332 1222          2222222223455678888888


Q ss_pred             EEEEeecCCcccceEEEEEcCCCcEEEEE----eCCCcEEEEeCCCceeeeeeccCC-cceEEEEECCCCCEEEEeeCCC
Q psy15421        260 ELAMYSHDNIICGITSVAFSRSGRLLLAG----YDDFNCNVWDSMKTERAGILAGHD-NRVSCLGVTEDGMAVATGSWDS  334 (340)
Q Consensus       260 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g----~~d~~i~iw~~~~~~~~~~~~~h~-~~i~~~~~s~d~~~l~s~s~D~  334 (340)
                      .+..+.....  + ..+.-||+++++.+.    .+...|.++|..+.+....+.... ..+..+.|++||.++..+..|+
T Consensus       261 vv~~I~~~G~--g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~  337 (369)
T PF02239_consen  261 VVKTIPTQGG--G-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG  337 (369)
T ss_dssp             EEEEEE-SSS--S---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--
T ss_pred             EEEEEECCCC--c-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecC
Confidence            7777654432  3 567889999999987    556899999999988777765332 3588999999999766555543


Q ss_pred             --cEEecC
Q psy15421        335 --FLRIWN  340 (340)
Q Consensus       335 --~i~iW~  340 (340)
                        .|.|+|
T Consensus       338 ~~~i~v~D  345 (369)
T PF02239_consen  338 NGAIVVYD  345 (369)
T ss_dssp             TTEEEEEE
T ss_pred             CCEEEEEE
Confidence              588875

...

>KOG1272|consensus

Probab=99.68  E-value=1.1e-16  Score=136.04  Aligned_cols=227  Identities=17%  Similarity=0.256  Sum_probs=183.0

Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEE
Q psy15421        100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCAS  179 (340)
Q Consensus       100 i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~  179 (340)
                      .+.+.|+.+|.+++.|+.-|.+-.+|+.+..    ...++.. ...|..+.|..+.++++......+.+||-. |..+.+
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~----L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHC  205 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK----LHFEINV-METVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHC  205 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccce----eeeeeeh-hhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEee
Confidence            4677899999999999999999999987753    2222221 233555666666677888889999999975 566777


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCc
Q psy15421        180 FIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ  259 (340)
Q Consensus       180 ~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  259 (340)
                      +..| ..|..+.|-|..-+|++++..|.++.-|+..|+.+..+....+++..+.-.|-...+-+|...|+|.+|.-....
T Consensus       206 lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske  284 (545)
T KOG1272|consen  206 LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE  284 (545)
T ss_pred             hhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence            7655 458999999999999999999999999999999998888778888889999988899999999999999988877


Q ss_pred             EEEEe-ecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        260 ELAMY-SHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       260 ~~~~~-~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      ++..+ .|.   .+|.++++.|+|+|+++.+-|..++|||+.....+..+.. .-+...+++|.-|.  +..|....|.|
T Consensus       285 PLvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl--LA~~~G~~v~i  358 (545)
T KOG1272|consen  285 PLVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGL--LALSYGDHVQI  358 (545)
T ss_pred             hHHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccc--eeeecCCeeee
Confidence            76543 233   4699999999999999999999999999988776555544 45667788898773  44566668888


Q ss_pred             c
Q psy15421        339 W  339 (340)
Q Consensus       339 W  339 (340)
                      |
T Consensus       359 w  359 (545)
T KOG1272|consen  359 W  359 (545)
T ss_pred             e
Confidence            8

>KOG2139|consensus

Probab=99.67  E-value=1.5e-13  Score=113.86  Aligned_cols=242  Identities=20%  Similarity=0.297  Sum_probs=159.7

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEee-CCCCcEEEEEECCC-CCEEEEEeCCCeEEEEEccCCCCce
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP-LRSSWVMTCAYAPS-GSFVACGGLDNICSIYSLKTREGNV  133 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~  133 (340)
                      -.+..++|++--..++++..|-+|+++|-.. .....++ ..+..|.+++|.|. ++.|+.|...+. -+|.........
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gI-ciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGI-CIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeeccee-EEEEcCcccccc
Confidence            4577899998666788999999999998665 3333332 33567999999995 457777777775 689865422111


Q ss_pred             EE----------EEeecCCCcceEEEEEcCCC-eEEEEeC-CCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEE
Q psy15421        134 RV----------SRELPGHTGYLSCCRFLDDN-QIVTSSG-DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVS  201 (340)
Q Consensus       134 ~~----------~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s  201 (340)
                      +.          ...-++| .+|.++.|.+++ .+++++- |..|.|||..+++.+.-...-.+.++-+.|+||+..+.+
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence            10          1122455 678999998776 5666654 788999999998765433334456889999999999999


Q ss_pred             EeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEeCcC--CcE-------------EEEe-
Q psy15421        202 GACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA-TGSDDATCRLFDIRA--DQE-------------LAMY-  264 (340)
Q Consensus       202 g~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~d~~i~iwd~~~--~~~-------------~~~~-  264 (340)
                      +..|+..++|+....--.....--.+.|...+|+|+|+.|+ +.+.  .-++|.+.-  ...             +..+ 
T Consensus       256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg--sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~  333 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG--SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ  333 (445)
T ss_pred             ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC--CceEEEEeecCCCccccCcccceeeeeeccch
Confidence            99999999995433221222222345899999999998754 4443  334444321  100             0000 


Q ss_pred             ------ecCCcccceEEEEEcCCCcEEEEEeCCCc--------EEEEeCCCc
Q psy15421        265 ------SHDNIICGITSVAFSRSGRLLLAGYDDFN--------CNVWDSMKT  302 (340)
Q Consensus       265 ------~~~~~~~~i~~~~~s~~~~~l~~g~~d~~--------i~iw~~~~~  302 (340)
                            ...-...++.+++|.|.|.+||+-...+.        |.+|+....
T Consensus       334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s  385 (445)
T KOG2139|consen  334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS  385 (445)
T ss_pred             hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence                  00111235789999999999999765543        566775543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.66  E-value=2.1e-14  Score=115.22  Aligned_cols=146  Identities=21%  Similarity=0.327  Sum_probs=103.0

Q ss_pred             EEEEEcCCCCEEEEEeC----------CCcEEEEECCCC-eeeeEecC-CCCCeEEEEEecCCCEEEEE--eCCCcEEEE
Q psy15421        188 MSLSLAPDMRTFVSGAC----------DASAKLWDIRDG-SCKQTFPG-HESDINAVTFFPNGWAFATG--SDDATCRLF  253 (340)
Q Consensus       188 ~~~~~~~~~~~~~sg~~----------dg~i~~wd~~~~-~~~~~~~~-h~~~v~~v~~~~~~~~l~s~--s~d~~i~iw  253 (340)
                      ..+.|+|+|.+++.-..          -+...+|.++.. .....++- ..++|.+++|+|+|..||..  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            45677777776553221          134555555322 22333322 34579999999999987654  457899999


Q ss_pred             eCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeC---CCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEe
Q psy15421        254 DIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYD---DFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATG  330 (340)
Q Consensus       254 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~---d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~  330 (340)
                      |++ .+.+..+..    ..++.+.|+|+|++|++|+.   .|.+.+||..+.+.+.... |. .++.++|||||++|+++
T Consensus        89 d~~-~~~i~~~~~----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta  161 (194)
T PF08662_consen   89 DVK-GKKIFSFGT----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATA  161 (194)
T ss_pred             cCc-ccEeEeecC----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEE
Confidence            997 445555432    24678999999999999874   3679999999888877653 43 47899999999999988


Q ss_pred             eC------CCcEEecC
Q psy15421        331 SW------DSFLRIWN  340 (340)
Q Consensus       331 s~------D~~i~iW~  340 (340)
                      +.      |..++||+
T Consensus       162 ~t~~r~~~dng~~Iw~  177 (194)
T PF08662_consen  162 TTSPRLRVDNGFKIWS  177 (194)
T ss_pred             EeccceeccccEEEEE
Confidence            74      77788885

>KOG1409|consensus

Probab=99.65  E-value=3.1e-14  Score=117.08  Aligned_cols=246  Identities=15%  Similarity=0.224  Sum_probs=177.0

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEe-CCCCCeeEEee-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD-SYTTNKVHAIP-LRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~-~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      .+.++||.+.|++...-|..+-+++.+.|.++|||- ...++--..+. .-..++.+..+.+....|++|-..+++.-+.
T Consensus        17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs   96 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA   96 (404)
T ss_pred             hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence            467899999999999989889999999999999993 22333222221 2246678889999999999999999998888


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEcC-CCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFLD-DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC  204 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~  204 (340)
                      +...-.+....+....|...+....|.. ...+++.+.|..+.-.-.+.+..+..+.- .....++.+.-.  +...|-.
T Consensus        97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~  173 (404)
T KOG1409|consen   97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGDH  173 (404)
T ss_pred             hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEeccc
Confidence            7765555566677778999999988864 45688888888877766666654432211 001111111111  4456666


Q ss_pred             CCcEEEEECCC--CeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEE--EEeecCCcccceEEEEEcC
Q psy15421        205 DASAKLWDIRD--GSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL--AMYSHDNIICGITSVAFSR  280 (340)
Q Consensus       205 dg~i~~wd~~~--~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~~~~~~~i~~~~~s~  280 (340)
                      .|.|..-.+..  -.++..+.+|...+.+++|.|....+.+|..|..+.+||+...+-.  ..+.+.   ..|..+..-+
T Consensus       174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~---~kV~~l~~~~  250 (404)
T KOG1409|consen  174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHN---DKVQALSYAQ  250 (404)
T ss_pred             ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccch---hhhhhhhhhh
Confidence            77776655433  3456788999999999999999999999999999999998754332  222332   2366666667


Q ss_pred             CCcEEEEEeCCCcEEEEeC
Q psy15421        281 SGRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       281 ~~~~l~~g~~d~~i~iw~~  299 (340)
                      --+.+.+++.||.|.+|+.
T Consensus       251 ~t~~l~S~~edg~i~~w~m  269 (404)
T KOG1409|consen  251 HTRQLISCGEDGGIVVWNM  269 (404)
T ss_pred             hheeeeeccCCCeEEEEec
Confidence            7788999999999999974

>KOG1334|consensus

Probab=99.65  E-value=4e-15  Score=127.37  Aligned_cols=247  Identities=23%  Similarity=0.334  Sum_probs=183.3

Q ss_pred             EEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEc---CCCeEEEEeCCCeEE
Q psy15421         91 HAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL---DDNQIVTSSGDMSCA  167 (340)
Q Consensus        91 ~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~d~~v~  167 (340)
                      ..+..|.+.|..|.|...|..|++|+.|..+.+||.......   ..-..+|...|....|.   .+..+++++.||+|+
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~---l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK---LSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcc---cccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            456788999999999999999999999999999999765432   23345777766655554   345799999999999


Q ss_pred             EEECCCCce---EEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeeeEe---cCCCC---CeEEEEEecC
Q psy15421        168 LWDIETGQQ---CASFIGHTGDVMSLSLAPDMR-TFVSGACDASAKLWDIRDGSCKQTF---PGHES---DINAVTFFPN  237 (340)
Q Consensus       168 iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~-~~~sg~~dg~i~~wd~~~~~~~~~~---~~h~~---~v~~v~~~~~  237 (340)
                      +=.+.....   ...+..|.+++.-++.-|+.. -|++++.|+.+.-+|++.+.+...+   +.+..   ...+++..|.
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence            877644332   345567999999999999765 5889999999999999887543322   22333   4678889986


Q ss_pred             CC-EEEEEeCCCcEEEEeCcCCcE------EEEeecC----CcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCce---
Q psy15421        238 GW-AFATGSDDATCRLFDIRADQE------LAMYSHD----NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTE---  303 (340)
Q Consensus       238 ~~-~l~s~s~d~~i~iwd~~~~~~------~~~~~~~----~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~---  303 (340)
                      .. .|++|+.|..+++||.+.-..      +..+...    .....|++++|+.++.-|+++..|-.|++|+..-+.   
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~  372 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE  372 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence            55 899999999999999875322      1222111    222359999999888888888888889999632111   


Q ss_pred             ---------ee-eeeccCCc--ceEEEEE-CCCCCEEEEeeCCCcEEecC
Q psy15421        304 ---------RA-GILAGHDN--RVSCLGV-TEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       304 ---------~~-~~~~~h~~--~i~~~~~-s~d~~~l~s~s~D~~i~iW~  340 (340)
                               .. ..+.||.+  .|.++-| -|...|++|||+=|.|.||+
T Consensus       373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~  422 (559)
T KOG1334|consen  373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD  422 (559)
T ss_pred             CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence                     11 23678864  5777766 78888999999999999996

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=6.8e-13  Score=120.09  Aligned_cols=232  Identities=15%  Similarity=0.144  Sum_probs=153.1

Q ss_pred             eEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeC---CCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC
Q psy15421         78 KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGL---DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD  154 (340)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  154 (340)
                      .|.+||...... ..+..+...+...+|+|||+.|+..+.   +..+.+|++..++  .......+++   .....|+++
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~--~~~l~~~~~~---~~~~~~SPD  253 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRH---NGAPAFSPD  253 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC--eEEccCCCCC---cCCeEECCC
Confidence            688888765443 333344567889999999999886543   3467888876543  2222233333   334568777


Q ss_pred             Ce-EEEE-eCCC--eEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEE--ECCCCeeeeEecCCCC
Q psy15421        155 NQ-IVTS-SGDM--SCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC-DASAKLW--DIRDGSCKQTFPGHES  227 (340)
Q Consensus       155 ~~-l~~~-~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~-dg~i~~w--d~~~~~~~~~~~~h~~  227 (340)
                      +. |+.. +.++  .|.+||+.+++. ..+..+...+....|+||++.++..+. ++...+|  |+..+... .+..+..
T Consensus       254 G~~La~~~~~~g~~~I~~~d~~tg~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~  331 (429)
T PRK03629        254 GSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGS  331 (429)
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCC
Confidence            64 5433 3344  588999988764 344444556788999999998876665 3444555  66665433 3333344


Q ss_pred             CeEEEEEecCCCEEEEEeCC---CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCc---EEEEeCCC
Q psy15421        228 DINAVTFFPNGWAFATGSDD---ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN---CNVWDSMK  301 (340)
Q Consensus       228 ~v~~v~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~---i~iw~~~~  301 (340)
                      ......|+|||++++..+.+   ..|.+||+.++..... ....   ......|+|||++|+.++.++.   +.+++. +
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~L-t~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~  406 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL-TDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-D  406 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEe-CCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEEC-C
Confidence            45678999999998876554   3588899877654322 2111   1235689999999999888765   566664 5


Q ss_pred             ceeeeeeccCCcceEEEEECC
Q psy15421        302 TERAGILAGHDNRVSCLGVTE  322 (340)
Q Consensus       302 ~~~~~~~~~h~~~i~~~~~s~  322 (340)
                      +.....+.+|.+.+...+|+|
T Consensus       407 G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        407 GRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCCeEECccCCCCcCCcccCC
Confidence            666677778889999999998

>KOG3881|consensus

Probab=99.63  E-value=1.3e-13  Score=115.33  Aligned_cols=264  Identities=16%  Similarity=0.121  Sum_probs=179.2

Q ss_pred             ccCcEEEEEEcCCCC--eEEEEeCCCeEEEEeCCCCCeeEEe------eCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         54 HLAKIYAMHWGSDSR--NLVSASQDGKLIVWDSYTTNKVHAI------PLRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        54 h~~~v~~~~~s~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~------~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      ...+|..++|.-+++  .+..++.|..+..++..........      ......|-....  -...|++|-.+|.+++|.
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~--~dg~Litc~~sG~l~~~~  131 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL--ADGTLITCVSSGNLQVRH  131 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh--cCCEEEEEecCCcEEEEe
Confidence            346788888876554  4666667778887776655433222      122223332222  234567778889999999


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEcCC--CeEEEEeCC--CeEEEEECCCCceEEEEecCC---------CCeEEEEE
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSGD--MSCALWDIETGQQCASFIGHT---------GDVMSLSL  192 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~d--~~v~iwd~~~~~~~~~~~~~~---------~~v~~~~~  192 (340)
                      ...+.........+..+. .+..+.-.+.  ..+++|+..  ..+.+||++..+++..-....         -.++.+.|
T Consensus       132 ~k~~d~hss~l~~la~g~-g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F  210 (412)
T KOG3881|consen  132 DKSGDLHSSKLIKLATGP-GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF  210 (412)
T ss_pred             ccCCccccccceeeecCC-ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence            875442222222332232 2333333332  345557767  779999999886655433221         13567888


Q ss_pred             cCC--CCEEEEEeCCCcEEEEECCCCe-eeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCc
Q psy15421        193 APD--MRTFVSGACDASAKLWDIRDGS-CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNI  269 (340)
Q Consensus       193 ~~~--~~~~~sg~~dg~i~~wd~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~  269 (340)
                      -|.  ...|+++..-+++++||.+.++ ++..+.--+.++.++...|.+..+.+|..-|.+..||.+.++.+.-. ..+.
T Consensus       211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~-~kg~  289 (412)
T KOG3881|consen  211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG-LKGI  289 (412)
T ss_pred             cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc-cCCc
Confidence            887  7889999999999999998764 56777767789999999999999999999999999999988765432 2445


Q ss_pred             ccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECC
Q psy15421        270 ICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTE  322 (340)
Q Consensus       270 ~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~  322 (340)
                      ..+|.++..+|.++++++++-|+.+||+|..+.+.+... .-...++++-+.+
T Consensus       290 tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~~~  341 (412)
T KOG3881|consen  290 TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILLRD  341 (412)
T ss_pred             cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh-hhhccccEEEecC
Confidence            567999999999999999999999999999885544322 1234455555544

>KOG4497|consensus

Probab=99.63  E-value=8.4e-13  Score=108.26  Aligned_cols=281  Identities=17%  Similarity=0.215  Sum_probs=185.6

Q ss_pred             eEEeEEecCcc-----CcEEEEEEcCCCCeEE-EEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCE-EEEEeC
Q psy15421         45 MRTRRTLRGHL-----AKIYAMHWGSDSRNLV-SASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSF-VACGGL  117 (340)
Q Consensus        45 ~~~~~~~~~h~-----~~v~~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~-l~~~~~  117 (340)
                      .+...+|+-|+     ++|.-+.|..|.-+++ ....|+.|.+|++...+--..+...+..+..+.|||||+. |.+...
T Consensus        33 iRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF  112 (447)
T KOG4497|consen   33 IRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEF  112 (447)
T ss_pred             EeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecc
Confidence            33444555553     7888999998887655 4567889999999887777777777778999999999954 566778


Q ss_pred             CCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeC-----------------------------------
Q psy15421        118 DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSG-----------------------------------  162 (340)
Q Consensus       118 d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~-----------------------------------  162 (340)
                      +-.+.+|.+.+..+..     ++-....+....|++++++++-..                                   
T Consensus       113 ~lriTVWSL~t~~~~~-----~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs  187 (447)
T KOG4497|consen  113 DLRITVWSLNTQKGYL-----LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS  187 (447)
T ss_pred             eeEEEEEEeccceeEE-----ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceEC
Confidence            8899999998754321     111112234455556555443221                                   


Q ss_pred             --CCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeee---------------------
Q psy15421        163 --DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCK---------------------  219 (340)
Q Consensus       163 --d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~---------------------  219 (340)
                        +..+.+||---.-.+..+. ..-.+..+.|+|.+++++.|+.|+.+|+.+--+-+..                     
T Consensus       188 Pdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~  266 (447)
T KOG4497|consen  188 PDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKET  266 (447)
T ss_pred             CCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhh
Confidence              1234455532221111111 1235889999999999999999999988541110000                     


Q ss_pred             ---------------------------------------eEec------CCCCCeEEEEEecCCCEEEEEeC--CCcEEE
Q psy15421        220 ---------------------------------------QTFP------GHESDINAVTFFPNGWAFATGSD--DATCRL  252 (340)
Q Consensus       220 ---------------------------------------~~~~------~h~~~v~~v~~~~~~~~l~s~s~--d~~i~i  252 (340)
                                                             ..++      .....+--++|++|..+++|-..  -..+-+
T Consensus       267 ~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~  346 (447)
T KOG4497|consen  267 FSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWL  346 (447)
T ss_pred             cchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEE
Confidence                                                   0000      01112446899999988888654  355899


Q ss_pred             EeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeC
Q psy15421        253 FDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSW  332 (340)
Q Consensus       253 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~  332 (340)
                      ||+...+.-..+...   .+|.+..|+|....|+.+.....+++|.......+. ..+-.-.|..+.|.-+|..|+-.+.
T Consensus       347 Wdlq~l~l~avLiQk---~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i~l~~k  422 (447)
T KOG4497|consen  347 WDLQNLKLHAVLIQK---HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG-VPKKGFNIQKLQWLQPGEFIVLCGK  422 (447)
T ss_pred             Eechhhhhhhhhhhc---cceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe-cCCCCceeeeEEecCCCcEEEEEcC
Confidence            999866543333222   358999999999999998888889999854433333 2333467999999999999999998


Q ss_pred             CCc
Q psy15421        333 DSF  335 (340)
Q Consensus       333 D~~  335 (340)
                      |-.
T Consensus       423 Daf  425 (447)
T KOG4497|consen  423 DAF  425 (447)
T ss_pred             Cce
Confidence            854

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=3.5e-13  Score=122.45  Aligned_cols=233  Identities=16%  Similarity=0.116  Sum_probs=151.4

Q ss_pred             CeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC---CeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC
Q psy15421         77 GKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD---NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD  153 (340)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  153 (340)
                      ..|.+||.... ....+..+...+...+|+|||+.++..+.+   ..+.+|++..+.  .....   ...+......|++
T Consensus       184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~--~~~l~---~~~g~~~~~~~Sp  257 (433)
T PRK04922        184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ--RELVA---SFRGINGAPSFSP  257 (433)
T ss_pred             EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC--EEEec---cCCCCccCceECC
Confidence            46889997543 334454556678889999999999887643   358888886543  12222   2233334567777


Q ss_pred             CC-eEE-EEeCCC--eEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCc--EEEEECCCCeeeeEecCCC
Q psy15421        154 DN-QIV-TSSGDM--SCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC-DAS--AKLWDIRDGSCKQTFPGHE  226 (340)
Q Consensus       154 ~~-~l~-~~~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~-dg~--i~~wd~~~~~~~~~~~~h~  226 (340)
                      ++ .++ +.+.++  .|.+||+.+++. ..+..+.......+|+||++.++..+. +|.  |.++|+..++... +..+.
T Consensus       258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g  335 (433)
T PRK04922        258 DGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQG  335 (433)
T ss_pred             CCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCC
Confidence            76 443 444444  699999988764 445555555667899999998876663 555  6666776665432 22233


Q ss_pred             CCeEEEEEecCCCEEEEEeCCC---cEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCC---CcEEEEeCC
Q psy15421        227 SDINAVTFFPNGWAFATGSDDA---TCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD---FNCNVWDSM  300 (340)
Q Consensus       227 ~~v~~v~~~~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---~~i~iw~~~  300 (340)
                      .....++|+|+|++++..+.++   .|.+||+.+++.. .+....   ......|+|||++++..+.+   +.+.+++..
T Consensus       336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            3445689999999988765443   5999998776554 222221   13356899999988876653   457777763


Q ss_pred             CceeeeeeccCCcceEEEEECC
Q psy15421        301 KTERAGILAGHDNRVSCLGVTE  322 (340)
Q Consensus       301 ~~~~~~~~~~h~~~i~~~~~s~  322 (340)
                       +.....+..+.+.+...+|||
T Consensus       412 -g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        412 -GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             -CCceEEcccCCCCCCCCccCC
Confidence             444555655667777788887

>KOG3881|consensus

Probab=99.62  E-value=1.7e-13  Score=114.56  Aligned_cols=185  Identities=17%  Similarity=0.259  Sum_probs=145.0

Q ss_pred             CCCeEEEEeCCCeEEEEECCCCc----eEEEEecCCCCeEEEEEcCCCCEEE-EEeCC--CcEEEEECCCCeeeeEecCC
Q psy15421        153 DDNQIVTSSGDMSCALWDIETGQ----QCASFIGHTGDVMSLSLAPDMRTFV-SGACD--ASAKLWDIRDGSCKQTFPGH  225 (340)
Q Consensus       153 ~~~~l~~~~~d~~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~-sg~~d--g~i~~wd~~~~~~~~~~~~h  225 (340)
                      .++.|++|-.+|.+.+|..+.+.    ....+..+ ..+..|.-+|...+++ +|+..  ..+++||+...+.+.+-+.-
T Consensus       114 ~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv  192 (412)
T KOG3881|consen  114 ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV  192 (412)
T ss_pred             cCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence            36688999999999999998543    22223222 4466777777666555 58888  89999999877544332211


Q ss_pred             -------CC--CeEEEEEecC--CCEEEEEeCCCcEEEEeCcCC-cEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCc
Q psy15421        226 -------ES--DINAVTFFPN--GWAFATGSDDATCRLFDIRAD-QELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN  293 (340)
Q Consensus       226 -------~~--~v~~v~~~~~--~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~  293 (340)
                             .-  .++++.|-|.  ...||++..-+.+++||.+.+ +++..+...  ..+++++...|+++++.+|..-+.
T Consensus       193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~--E~~is~~~l~p~gn~Iy~gn~~g~  270 (412)
T KOG3881|consen  193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL--ENPISSTGLTPSGNFIYTGNTKGQ  270 (412)
T ss_pred             CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc--cCcceeeeecCCCcEEEEecccch
Confidence                   11  2457888887  789999999999999999844 455555433  346999999999999999999999


Q ss_pred             EEEEeCCCceeeee-eccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        294 CNVWDSMKTERAGI-LAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       294 i~iw~~~~~~~~~~-~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +..||...++.... +.+-.+.|.++-.+|.+++|+|||.|..|||.|
T Consensus       271 l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD  318 (412)
T KOG3881|consen  271 LAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHD  318 (412)
T ss_pred             hheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence            99999999888776 788899999999999999999999999999986

>KOG4497|consensus

Probab=99.62  E-value=2e-13  Score=111.89  Aligned_cols=271  Identities=17%  Similarity=0.197  Sum_probs=179.7

Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEccCCCCceEEEEe
Q psy15421         60 AMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGG-LDNICSIYSLKTREGNVRVSRE  138 (340)
Q Consensus        60 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~  138 (340)
                      -++|||+|+++++++.- .+.|-|.++-+..+.+.- -..|.-+.|..+..+++++. .++.|++|++...+    ....
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe----w~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE----WYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecce----eEEE
Confidence            46799999999998876 788888877654322211 12355677888888877764 56699999997654    3444


Q ss_pred             ecCCCcceEEEEEcCCC-eEE-EEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeC-C----------
Q psy15421        139 LPGHTGYLSCCRFLDDN-QIV-TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC-D----------  205 (340)
Q Consensus       139 ~~~~~~~v~~~~~~~~~-~l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~-d----------  205 (340)
                      +......+...+|++++ .++ +..-+-.|.+|.+.+.+.. -+.-.+..+..++|+|++++.+..+. |          
T Consensus        87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC  165 (447)
T ss_pred             eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence            55556677888898887 444 5555999999999875432 22222334678888998887765443 2          


Q ss_pred             -------------------------CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcE
Q psy15421        206 -------------------------ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQE  260 (340)
Q Consensus       206 -------------------------g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~  260 (340)
                                               ..+.+||.--...+..+ ..+-.+..++|+|.++.++.|+.|+.+|+-+--+.++
T Consensus       166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~  244 (447)
T KOG4497|consen  166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP  244 (447)
T ss_pred             HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence                                     11122221100000111 1224578899999999999999999998764211100


Q ss_pred             EE------------------------------------------------------------Eee----cCCcccceEEE
Q psy15421        261 LA------------------------------------------------------------MYS----HDNIICGITSV  276 (340)
Q Consensus       261 ~~------------------------------------------------------------~~~----~~~~~~~i~~~  276 (340)
                      ..                                                            ...    ..+..+++..+
T Consensus       245 f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~l  324 (447)
T KOG4497|consen  245 FGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKL  324 (447)
T ss_pred             hhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccccee
Confidence            00                                                            000    01223457789


Q ss_pred             EEcCCCcEEEEEeCC--CcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        277 AFSRSGRLLLAGYDD--FNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       277 ~~s~~~~~l~~g~~d--~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      +|++|..++++-.++  ..+-+||+.+.+....+. ...+|....|.|....|+.+.....+++|
T Consensus       325 afs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W  388 (447)
T KOG4497|consen  325 AFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFW  388 (447)
T ss_pred             eecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEE
Confidence            999999999986654  568899988777666553 56789999999998888888777788888

>KOG1240|consensus

Probab=99.62  E-value=4e-13  Score=126.73  Aligned_cols=257  Identities=18%  Similarity=0.184  Sum_probs=168.2

Q ss_pred             EeCCCCCeeEEeeCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEccCCCCc---eEEEEeecCCCcceEEEEEcC-CCe
Q psy15421         82 WDSYTTNKVHAIPLRSSWVMTCAYAP-SGSFVACGGLDNICSIYSLKTREGN---VRVSRELPGHTGYLSCCRFLD-DNQ  156 (340)
Q Consensus        82 wd~~~~~~~~~~~~~~~~i~~v~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~  156 (340)
                      |+. .|..+..+..|...+..++.++ ++.+|++|+.||+|++|+.+.-.+.   .+-..+.....+.+.++.+.. +.+
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            443 3556667777888887777765 5599999999999999998753333   222222222344555555443 457


Q ss_pred             EEEEeCCCeEEEEECCCC--ce-----EEEEecCC-CCe-EEEEEcCC-CC-EEEEEeCCCcEEEEECCCCeeeeEe--c
Q psy15421        157 IVTSSGDMSCALWDIETG--QQ-----CASFIGHT-GDV-MSLSLAPD-MR-TFVSGACDASAKLWDIRDGSCKQTF--P  223 (340)
Q Consensus       157 l~~~~~d~~v~iwd~~~~--~~-----~~~~~~~~-~~v-~~~~~~~~-~~-~~~sg~~dg~i~~wd~~~~~~~~~~--~  223 (340)
                      ++.++.||.|.+.++...  +.     ......+. +.+ ..-++... +. .++.+..-+.|..||++.......+  +
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            888899999999998652  11     11111111 222 22233322 23 5667778899999999876543332  2


Q ss_pred             CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCC---cE-EEEEe-CCCcEEEEe
Q psy15421        224 GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSG---RL-LLAGY-DDFNCNVWD  298 (340)
Q Consensus       224 ~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~-l~~g~-~d~~i~iw~  298 (340)
                      ...+.|++++.+|.+..+++|...|.+-+||++-..++....+... +++..+..+|..   .. +++|+ ..+.+.+|+
T Consensus      1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred             ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence            3346899999999999999999999999999997777766655443 567777776543   34 44455 688999999


Q ss_pred             CCCceeeeeeccC-------------------CcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        299 SMKTERAGILAGH-------------------DNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       299 ~~~~~~~~~~~~h-------------------~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ..++.+...+..-                   .-.....++..-+..+.+|+.|..||.||
T Consensus      1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred             cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence            9887655443221                   11112223333445788999999999998

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.61  E-value=2.2e-13  Score=109.32  Aligned_cols=135  Identities=19%  Similarity=0.364  Sum_probs=99.1

Q ss_pred             eEEEEECCCC-ceEEEEe-cCCCCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCE
Q psy15421        165 SCALWDIETG-QQCASFI-GHTGDVMSLSLAPDMRTFVS--GACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA  240 (340)
Q Consensus       165 ~v~iwd~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~~s--g~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~  240 (340)
                      ...+|.++.. .....+. ...++|.+++|+|+++.|++  |..++.|.+||++ ++.+..+.  ...++.+.|+|+|++
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~  114 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRF  114 (194)
T ss_pred             eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCE
Confidence            3445554222 2333332 23457999999999998654  4567899999997 55566664  467899999999999


Q ss_pred             EEEEeCC---CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeC------CCcEEEEeCCCceeeee
Q psy15421        241 FATGSDD---ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYD------DFNCNVWDSMKTERAGI  307 (340)
Q Consensus       241 l~s~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~------d~~i~iw~~~~~~~~~~  307 (340)
                      +++++.+   |.+.+||.++.+.+....+.    .++.++|+|+|++|+++..      |..++||+. .++.+..
T Consensus       115 l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~----~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~  185 (194)
T PF08662_consen  115 LVLAGFGNLNGDLEFWDVRKKKKISTFEHS----DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYK  185 (194)
T ss_pred             EEEEEccCCCcEEEEEECCCCEEeeccccC----cEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEe
Confidence            9998753   67999999988777665543    2689999999999999874      677899985 4555443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=4.3e-13  Score=121.47  Aligned_cols=234  Identities=15%  Similarity=0.133  Sum_probs=147.8

Q ss_pred             CeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC---CeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC
Q psy15421         77 GKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD---NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD  153 (340)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  153 (340)
                      ..|.++|.. +.....+..+...+...+|+|||+.++..+.+   ..+.+|++.++..  ......   .+......|++
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~---~g~~~~~~~SP  249 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANF---KGSNSAPAWSP  249 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecC---CCCccceEECC
Confidence            356677763 44444444566778899999999998877643   3588889875532  222222   23344567877


Q ss_pred             CC-eEE-EEeCCCeEEEEE--CCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEC--CCCeeeeEecCCC
Q psy15421        154 DN-QIV-TSSGDMSCALWD--IETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC-DASAKLWDI--RDGSCKQTFPGHE  226 (340)
Q Consensus       154 ~~-~l~-~~~~d~~v~iwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~-dg~i~~wd~--~~~~~~~~~~~h~  226 (340)
                      ++ .++ +.+.++...+|.  +.++. ...+..+........|+||++.++..+. +|...+|.+  ..+.... +..+.
T Consensus       250 DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g  327 (427)
T PRK02889        250 DGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTG  327 (427)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCC
Confidence            76 454 456677766665  44443 4455555555667889999998776553 566677754  4443322 21122


Q ss_pred             CCeEEEEEecCCCEEEEEeCCC---cEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCC---cEEEEeCC
Q psy15421        227 SDINAVTFFPNGWAFATGSDDA---TCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDF---NCNVWDSM  300 (340)
Q Consensus       227 ~~v~~v~~~~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~---~i~iw~~~  300 (340)
                      ......+|+|+|++++..+.++   .|.+||+.+++..... ...   ......|+|||++|+..+.++   .+.+.+. 
T Consensus       328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-  402 (427)
T PRK02889        328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSS-  402 (427)
T ss_pred             CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CCC---CccCceECCCCCEEEEEEecCCCEEEEEEEC-
Confidence            2344678999999998777654   5999999876543322 111   134679999999998877554   2444444 


Q ss_pred             CceeeeeeccCCcceEEEEECCC
Q psy15421        301 KTERAGILAGHDNRVSCLGVTED  323 (340)
Q Consensus       301 ~~~~~~~~~~h~~~i~~~~~s~d  323 (340)
                      ++.....+..+.+.+...+|+|-
T Consensus       403 ~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        403 DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCCceEEeecCCCCCCCCccCCC
Confidence            45555566667778888888874

>KOG1310|consensus

Probab=99.61  E-value=1.2e-14  Score=126.25  Aligned_cols=163  Identities=27%  Similarity=0.439  Sum_probs=128.2

Q ss_pred             EEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEE-ecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEE
Q psy15421        136 SRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASF-IGHTGDVMSLSLAPD--MRTFVSGACDASAKLW  211 (340)
Q Consensus       136 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~~~sg~~dg~i~~w  211 (340)
                      ..++.+|++.|+++.|..++ .|++|+.|-.+.|||....+.+..+ .+|...|.++.|.|.  .+.+++|+.|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            34678999999999998776 5778888999999999877766554 579999999999994  5678899999999999


Q ss_pred             ECCCC----------eeeeEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCcCCcEEE--E------eecCCcccc
Q psy15421        212 DIRDG----------SCKQTFPGHESDINAVTFFPNG-WAFATGSDDATCRLFDIRADQELA--M------YSHDNIICG  272 (340)
Q Consensus       212 d~~~~----------~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~--~------~~~~~~~~~  272 (340)
                      |+...          ...+.+.-|...|..++..|++ ..|.+++.||+|+-+|++....-.  .      .........
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE  202 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence            99741          2344566788899999999987 689999999999999998632110  0      000111234


Q ss_pred             eEEEEEcCCC-cEEEEEeCCCcEEEEe
Q psy15421        273 ITSVAFSRSG-RLLLAGYDDFNCNVWD  298 (340)
Q Consensus       273 i~~~~~s~~~-~~l~~g~~d~~i~iw~  298 (340)
                      ..++..+|.. .+|++|+.|--.++||
T Consensus       203 lk~ltisp~rp~~laVGgsdpfarLYD  229 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGGSDPFARLYD  229 (758)
T ss_pred             eeeeeecCCCCceEEecCCCchhhhhh
Confidence            6789999974 5788999999999999

>KOG2111|consensus

Probab=99.61  E-value=7.9e-13  Score=107.88  Aligned_cols=232  Identities=13%  Similarity=0.150  Sum_probs=150.7

Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeC-C------CeEEEEECC
Q psy15421        100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSG-D------MSCALWDIE  172 (340)
Q Consensus       100 i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~-d------~~v~iwd~~  172 (340)
                      ..+++|..|-.-+++|..+| .+||+.+.-.....  +....-.-.+.-+. ...+.++..++ +      ..|.|||=.
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~--r~~~~~G~~~veML-fR~N~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESAS--RQFIDGGFKIVEML-FRSNYLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhh--hccccCchhhhhHh-hhhceEEEecCCCCCCCCCceEEEEecc
Confidence            45588988888888877777 59998865221111  11110001111111 13455544333 2      479999955


Q ss_pred             CCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeeeeEecCCC--CCeEEEEEecCCCEEEE-EeCCC
Q psy15421        173 TGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIR-DGSCKQTFPGHE--SDINAVTFFPNGWAFAT-GSDDA  248 (340)
Q Consensus       173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~-~~~~~~~~~~h~--~~v~~v~~~~~~~~l~s-~s~d~  248 (340)
                      ..+++..+. ...+|.++.+.++.  +++ --++.|.+|.+. +.+..+.+....  ....+++-..+..+||- |-.-|
T Consensus        84 k~~~i~el~-f~~~I~~V~l~r~r--iVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G  159 (346)
T KOG2111|consen   84 KERCIIELS-FNSEIKAVKLRRDR--IVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG  159 (346)
T ss_pred             cCcEEEEEE-eccceeeEEEcCCe--EEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence            555555543 56789999998863  333 357899999987 334444443221  22333332223334443 44568


Q ss_pred             cEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCc-EEEEeCCCceeeeeecc--CCcceEEEEECCCCC
Q psy15421        249 TCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN-CNVWDSMKTERAGILAG--HDNRVSCLGVTEDGM  325 (340)
Q Consensus       249 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~-i~iw~~~~~~~~~~~~~--h~~~i~~~~~s~d~~  325 (340)
                      .|+|-|+...+.-.......+...|.|++.+.+|..+|+++..|+ |||||..+++.+.+++.  ....|+|++||||++
T Consensus       160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s  239 (346)
T KOG2111|consen  160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS  239 (346)
T ss_pred             eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence            999999876554211222344457999999999999999999886 79999999999888753  346799999999999


Q ss_pred             EEEEeeCCCcEEec
Q psy15421        326 AVATGSWDSFLRIW  339 (340)
Q Consensus       326 ~l~s~s~D~~i~iW  339 (340)
                      +|+.+|+-|++.|+
T Consensus       240 ~LavsSdKgTlHiF  253 (346)
T KOG2111|consen  240 WLAVSSDKGTLHIF  253 (346)
T ss_pred             EEEEEcCCCeEEEE
Confidence            99999999999986

>KOG0974|consensus

Probab=99.60  E-value=1.3e-13  Score=128.14  Aligned_cols=182  Identities=18%  Similarity=0.311  Sum_probs=145.3

Q ss_pred             CCCeEEEEeCCCeEEEEECCCCceEEEEecCCC----CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCC
Q psy15421        153 DDNQIVTSSGDMSCALWDIETGQQCASFIGHTG----DVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESD  228 (340)
Q Consensus       153 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~  228 (340)
                      ++.+++.++.+..+.+||...+.....+..-..    ...-+-++++.-++++|+.-+.|.+|+......-..+.+|++.
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~  177 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS  177 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence            456788899999999999987765544432111    1222334566678899999999999998733322247899999


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEE--EeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeee
Q psy15421        229 INAVTFFPNGWAFATGSDDATCRLFDIRADQELA--MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAG  306 (340)
Q Consensus       229 v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~  306 (340)
                      |-.+.++-||+++++.|.|.++++|++.+.+.+.  .++|   ..++..+.|+|.  .+++++.|-++++|. ..+..+.
T Consensus       178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH---saRvw~~~~~~n--~i~t~gedctcrvW~-~~~~~l~  251 (967)
T KOG0974|consen  178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH---SARVWACCFLPN--RIITVGEDCTCRVWG-VNGTQLE  251 (967)
T ss_pred             eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc---cceeEEEEeccc--eeEEeccceEEEEEe-cccceeh
Confidence            9999999999999999999999999998766543  3333   356899999998  999999999999996 4566666


Q ss_pred             eeccCCc-ceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        307 ILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       307 ~~~~h~~-~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .+.+|.. .|..++..++...+++++.|+.+++|+
T Consensus       252 ~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~  286 (967)
T KOG0974|consen  252 VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD  286 (967)
T ss_pred             hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence            8888864 699999999999999999999999996

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=6.3e-12  Score=114.35  Aligned_cols=232  Identities=13%  Similarity=0.107  Sum_probs=150.8

Q ss_pred             CeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeC---CCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC
Q psy15421         77 GKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGL---DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD  153 (340)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  153 (340)
                      ..|.+||.. +.....+..+...+...+|+|||+.|+..+.   +..+.+|++.++..  .   .+..+.+.+....|++
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~---~l~~~~g~~~~~~~SP  255 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--E---LVGNFPGMTFAPRFSP  255 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--E---EeecCCCcccCcEECC
Confidence            378888874 4444555566778999999999999888764   35789999865432  1   2223444555667877


Q ss_pred             CC-eEE-EEeCCCe--EEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCeeeeEecCCC
Q psy15421        154 DN-QIV-TSSGDMS--CALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC-DA--SAKLWDIRDGSCKQTFPGHE  226 (340)
Q Consensus       154 ~~-~l~-~~~~d~~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~-dg--~i~~wd~~~~~~~~~~~~h~  226 (340)
                      ++ .++ +.+.++.  |.+||+.+++. ..+..+........|+||++.++..+. +|  .|.++|+..+.... +..+.
T Consensus       256 DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~  333 (435)
T PRK05137        256 DGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGG  333 (435)
T ss_pred             CCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCC
Confidence            76 444 4444554  77778887654 455556666678899999998876653 33  67788887665433 33334


Q ss_pred             CCeEEEEEecCCCEEEEEeCC---CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCC------CcEEEE
Q psy15421        227 SDINAVTFFPNGWAFATGSDD---ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD------FNCNVW  297 (340)
Q Consensus       227 ~~v~~v~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d------~~i~iw  297 (340)
                      ..+....|+|+|+.++..+.+   ..|.+||...... ..+....   .+....|+|||++|+..+.+      ..+.++
T Consensus       334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~  409 (435)
T PRK05137        334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV  409 (435)
T ss_pred             CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence            556678899999998876653   3578888754432 2222211   25578999999998875543      257777


Q ss_pred             eCCCceeeeeeccCCcceEEEEECC
Q psy15421        298 DSMKTERAGILAGHDNRVSCLGVTE  322 (340)
Q Consensus       298 ~~~~~~~~~~~~~h~~~i~~~~~s~  322 (340)
                      ++..... ..+. ..+.+...+|||
T Consensus       410 dl~g~~~-~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        410 DLTGRNE-REVP-TPGDASDPAWSP  432 (435)
T ss_pred             ECCCCce-EEcc-CCCCccCcccCC
Confidence            7654433 3343 244566677776

>KOG1064|consensus

Probab=99.55  E-value=5e-14  Score=136.96  Aligned_cols=202  Identities=19%  Similarity=0.274  Sum_probs=158.5

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEee-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP-LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      ..++-|-..|.++.=+|-.++.+||+.||.|++|-...++.+...+ ..+..|..+.|+.+|+.+..+..||.+-+|.+.
T Consensus      2202 ~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence            4566677888999989999999999999999999887777766554 223678888999999999999999999999886


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCCeEEEE---eCCCeEEEEECCC-CceEEEEecCCCCeEEEEEcCCCCEEEEEe
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDNQIVTS---SGDMSCALWDIET-GQQCASFIGHTGDVMSLSLAPDMRTFVSGA  203 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~---~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~  203 (340)
                      .     ++...-..|......+.|.. ..++++   +.++.+.+||..- +.......+|.+.++++++.|..+.+++|+
T Consensus      2282 p-----k~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2282 P-----KPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred             C-----cceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence            2     23344456777777777755 334443   3478899999532 222223378999999999999999999999


Q ss_pred             CCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeec
Q psy15421        204 CDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSH  266 (340)
Q Consensus       204 ~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  266 (340)
                      .+|.|++||++..++++.++.         ++ ...+|++|+..|.|+||++.....+..+..
T Consensus      2356 r~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             CcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence            999999999998887777764         33 456999999999999999988766665543

>KOG1354|consensus

Probab=99.53  E-value=4.4e-12  Score=104.63  Aligned_cols=244  Identities=17%  Similarity=0.262  Sum_probs=167.4

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCe-----eEEeeCCC------------CcEEEEEECCCC--CEEEEE
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNK-----VHAIPLRS------------SWVMTCAYAPSG--SFVACG  115 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~------------~~i~~v~~~~~~--~~l~~~  115 (340)
                      .+-|.++.|...|.+|+||..+|.|.++.-.....     ..+++.|.            ..|..+.|.+++  ..++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            35688999999999999999999999995433221     22333332            347788888765  467788


Q ss_pred             eCCCeEEEEEccCCCCce-----------------EEE--------------E-eecCCCcceEEEEEcCCCeEEEEeCC
Q psy15421        116 GLDNICSIYSLKTREGNV-----------------RVS--------------R-ELPGHTGYLSCCRFLDDNQIVTSSGD  163 (340)
Q Consensus       116 ~~d~~v~i~~~~~~~~~~-----------------~~~--------------~-~~~~~~~~v~~~~~~~~~~l~~~~~d  163 (340)
                      ..|+++++|.+..+....                 +..              + -..+|+-.++++.+..+...+....|
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd  184 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD  184 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence            999999999987643221                 000              0 01256777788888777766667789


Q ss_pred             CeEEEEECCCCceEEEE---ecC-----CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeee----eEecC------
Q psy15421        164 MSCALWDIETGQQCASF---IGH-----TGDVMSLSLAPDM-RTFVSGACDASAKLWDIRDGSCK----QTFPG------  224 (340)
Q Consensus       164 ~~v~iwd~~~~~~~~~~---~~~-----~~~v~~~~~~~~~-~~~~sg~~dg~i~~wd~~~~~~~----~~~~~------  224 (340)
                      -.|.+|+++--.....+   ..+     ..-+++..|+|.. +.|+-.+..|+|++.|+|...+-    +.+..      
T Consensus       185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~  264 (433)
T KOG1354|consen  185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS  264 (433)
T ss_pred             eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence            99999998754433332   222     2236788899964 46666788999999999854321    11111      


Q ss_pred             ------CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCc-CCcEEEEeecCC-------------cccceEEEEEcCCCcE
Q psy15421        225 ------HESDINAVTFFPNGWAFATGSDDATCRLFDIR-ADQELAMYSHDN-------------IICGITSVAFSRSGRL  284 (340)
Q Consensus       225 ------h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~  284 (340)
                            --..|..+.|++.|+++++-.. -+|++||+. ..+++..+....             ....-..++|+.++.+
T Consensus       265 rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~  343 (433)
T KOG1354|consen  265 RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY  343 (433)
T ss_pred             hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce
Confidence                  1134778999999999998754 789999984 555555543211             1112346789999999


Q ss_pred             EEEEeCCCcEEEEeC
Q psy15421        285 LLAGYDDFNCNVWDS  299 (340)
Q Consensus       285 l~~g~~d~~i~iw~~  299 (340)
                      +++|+.+...++|+.
T Consensus       344 v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  344 VMTGSYNNVFRVFNL  358 (433)
T ss_pred             EecccccceEEEecC
Confidence            999999999999984

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.4e-11  Score=111.55  Aligned_cols=221  Identities=13%  Similarity=0.120  Sum_probs=138.3

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEe---CCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEE-eCCC--eE
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSAS---QDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACG-GLDN--IC  121 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~-~~d~--~v  121 (340)
                      .+.+..+...+.+.+|+|||+.|+..+   .+..+.+||+.+++..... .....+....|+|||+.|+.. ..++  .+
T Consensus       191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I  269 (429)
T PRK03629        191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNL  269 (429)
T ss_pred             CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEE
Confidence            345556677899999999999988654   3457999999877543222 122234467899999988765 3344  47


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCCCe-EEEEeC-CCe--EEEEECCCCceEEEEecCCCCeEEEEEcCCCC
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSSG-DMS--CALWDIETGQQCASFIGHTGDVMSLSLAPDMR  197 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~-d~~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  197 (340)
                      .+|++.++.  ..   .+..+...+....|++++. ++.++. ++.  |..+|+.+++. ..+...........|+||++
T Consensus       270 ~~~d~~tg~--~~---~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~  343 (429)
T PRK03629        270 YVMDLASGQ--IR---QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGK  343 (429)
T ss_pred             EEEECCCCC--EE---EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCC
Confidence            777876542  21   2222333455667877764 655554 344  44556766543 34443444566789999999


Q ss_pred             EEEEEeCC---CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCc---EEEEeCcCCcEEEEeecCCccc
Q psy15421        198 TFVSGACD---ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDAT---CRLFDIRADQELAMYSHDNIIC  271 (340)
Q Consensus       198 ~~~sg~~d---g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~---i~iwd~~~~~~~~~~~~~~~~~  271 (340)
                      .++..+.+   ..|.+||+.++... .+... .......|+|||+.++.++.++.   +.++++..........+.   .
T Consensus       344 ~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~---~  418 (429)
T PRK03629        344 FMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATD---G  418 (429)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCC---C
Confidence            88765543   45888999887643 33321 12346789999999999888765   667777544332221222   2


Q ss_pred             ceEEEEEcC
Q psy15421        272 GITSVAFSR  280 (340)
Q Consensus       272 ~i~~~~~s~  280 (340)
                      .+...+|+|
T Consensus       419 ~~~~p~Wsp  427 (429)
T PRK03629        419 QVKFPAWSP  427 (429)
T ss_pred             CcCCcccCC
Confidence            356677776

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=6.8e-12  Score=113.71  Aligned_cols=201  Identities=16%  Similarity=0.160  Sum_probs=129.8

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCC---CeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEE-EEeCCCeEEEE
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQD---GKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVA-CGGLDNICSIY  124 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~-~~~~d~~v~i~  124 (340)
                      +.+..+...+.+.+|+||++.|+..+.+   ..|.+||+.+++.... ......+...+|+|||+.++ +.+.++...+|
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  267 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY  267 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence            4566778889999999999998877643   4599999988865432 22234456789999999886 46778877888


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeC-CCeEEEEEC--CCCceEEEEecCCCCeEEEEEcCCCCEEE
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSG-DMSCALWDI--ETGQQCASFIGHTGDVMSLSLAPDMRTFV  200 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d~~v~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  200 (340)
                      .+....+..   ..+..+........|++++ .++..+. ++...+|.+  .+++. ..+..........+|+|+++.++
T Consensus       268 ~~d~~~~~~---~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia  343 (427)
T PRK02889        268 TVNADGSGL---RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLA  343 (427)
T ss_pred             EEECCCCCc---EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEE
Confidence            765433322   2233333334445687776 4554443 455566654  44432 23322333345678999999988


Q ss_pred             EEeCCC---cEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCC---cEEEEeCc
Q psy15421        201 SGACDA---SAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDA---TCRLFDIR  256 (340)
Q Consensus       201 sg~~dg---~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~---~i~iwd~~  256 (340)
                      ..+.++   .|.+||+.+++... +... .......|+|||+.++..+.++   .+.+.+..
T Consensus       344 ~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~  403 (427)
T PRK02889        344 YISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD  403 (427)
T ss_pred             EEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence            766554   69999998876543 3222 2345789999999888777554   24444553

>KOG1354|consensus

Probab=99.52  E-value=1.7e-12  Score=107.03  Aligned_cols=241  Identities=24%  Similarity=0.385  Sum_probs=167.4

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEccCCC-CceEEEEeecCCCc------------ceEEEEEcCC---CeEEEEe
Q psy15421         98 SWVMTCAYAPSGSFVACGGLDNICSIYSLKTRE-GNVRVSRELPGHTG------------YLSCCRFLDD---NQIVTSS  161 (340)
Q Consensus        98 ~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~~------------~v~~~~~~~~---~~l~~~~  161 (340)
                      .-|.+|.|...|.+||+|..+|.|-++.-.... +.......+..|..            .+..+.|.++   ..++..+
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            457889999999999999999999888643221 22334444444432            3456667543   3578888


Q ss_pred             CCCeEEEEECCCCceE--------------------E--------------EE--ecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        162 GDMSCALWDIETGQQC--------------------A--------------SF--IGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       162 ~d~~v~iwd~~~~~~~--------------------~--------------~~--~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                      .|.+|++|-+......                    .              +.  .+|...++++.++.|+..+++ +.|
T Consensus       106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS-ADd  184 (433)
T KOG1354|consen  106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS-ADD  184 (433)
T ss_pred             CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee-ccc
Confidence            9999999987432100                    0              00  247777899999999988876 478


Q ss_pred             CcEEEEECCCCe---eeeEecCCC-----CCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCCcE----EEEeec------
Q psy15421        206 ASAKLWDIRDGS---CKQTFPGHE-----SDINAVTFFPN-GWAFATGSDDATCRLFDIRADQE----LAMYSH------  266 (340)
Q Consensus       206 g~i~~wd~~~~~---~~~~~~~h~-----~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~~----~~~~~~------  266 (340)
                      =.|.+|+++--.   .+..++++.     .-|++..|+|. ...|+-.++-|+|++-|++....    ...+..      
T Consensus       185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~  264 (433)
T KOG1354|consen  185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS  264 (433)
T ss_pred             eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence            899999986422   233344443     45889999996 56788888899999999985321    111111      


Q ss_pred             ----CCcccceEEEEEcCCCcEEEEEeCCCcEEEEeC-CCceeeeeeccCC------------cce---EEEEECCCCCE
Q psy15421        267 ----DNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS-MKTERAGILAGHD------------NRV---SCLGVTEDGMA  326 (340)
Q Consensus       267 ----~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~-~~~~~~~~~~~h~------------~~i---~~~~~s~d~~~  326 (340)
                          .....+|..+.|+++|+++++-+- -+|++||. +..+++.++.-|.            +.|   ..++|+.++.+
T Consensus       265 rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~  343 (433)
T KOG1354|consen  265 RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY  343 (433)
T ss_pred             hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce
Confidence                112346899999999999987543 47999997 5555666655553            233   34789999999


Q ss_pred             EEEeeCCCcEEecC
Q psy15421        327 VATGSWDSFLRIWN  340 (340)
Q Consensus       327 l~s~s~D~~i~iW~  340 (340)
                      +++||.....++++
T Consensus       344 v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  344 VMTGSYNNVFRVFN  357 (433)
T ss_pred             EecccccceEEEec
Confidence            99999999998874

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=2.1e-11  Score=110.97  Aligned_cols=201  Identities=19%  Similarity=0.189  Sum_probs=132.4

Q ss_pred             eEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEe---CCCeEEEEECCCCceEEEEecCCCCeEEEEEcCC
Q psy15421        120 ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSS---GDMSCALWDIETGQQCASFIGHTGDVMSLSLAPD  195 (340)
Q Consensus       120 ~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~---~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  195 (340)
                      .+.++|....  ..   ..+..+...+....|++++ .|+..+   ++..|.+||+.+++. ..+..+.+.+...+|+||
T Consensus       183 ~l~~~d~dg~--~~---~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPD  256 (435)
T PRK05137        183 RLAIMDQDGA--NV---RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPD  256 (435)
T ss_pred             EEEEECCCCC--Cc---EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCC
Confidence            4566665322  22   2234566678888888776 455544   356899999988765 344556667788999999


Q ss_pred             CCEEE-EEeCCCc--EEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeC-CC--cEEEEeCcCCcEEEEeecCCc
Q psy15421        196 MRTFV-SGACDAS--AKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSD-DA--TCRLFDIRADQELAMYSHDNI  269 (340)
Q Consensus       196 ~~~~~-sg~~dg~--i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-d~--~i~iwd~~~~~~~~~~~~~~~  269 (340)
                      ++.++ +.+.++.  |.+||+.++... .+..+........|+|||+.++..+. +|  .|+++|...+.........  
T Consensus       257 G~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~--  333 (435)
T PRK05137        257 GRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG--  333 (435)
T ss_pred             CCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC--
Confidence            98765 5566665  677788877653 35445555677899999998887664 33  5788887765443322211  


Q ss_pred             ccceEEEEEcCCCcEEEEEeCC---CcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeC
Q psy15421        270 ICGITSVAFSRSGRLLLAGYDD---FNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSW  332 (340)
Q Consensus       270 ~~~i~~~~~s~~~~~l~~g~~d---~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~  332 (340)
                       ..+....|+|+|+.|+....+   ..|.+|+...... ..+. +...+....|+|||++|+..+.
T Consensus       334 -~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        334 -GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             -CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEc
Confidence             224567899999999876543   3678888654432 3332 2234677899999998876554

>KOG2315|consensus

Probab=99.52  E-value=2.8e-11  Score=105.95  Aligned_cols=268  Identities=16%  Similarity=0.253  Sum_probs=165.2

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEe-----CC-----CeEEEEEc
Q psy15421         57 KIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGG-----LD-----NICSIYSL  126 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~-----~d-----~~v~i~~~  126 (340)
                      .+...+++++|++++ .+.+..++|++....+.+.+....  ....+.|+|-++||.+--     .+     -.+++|++
T Consensus        36 ~~~v~~~S~~G~lfA-~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v  112 (566)
T KOG2315|consen   36 PCNVFAYSNNGRLFA-YSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV  112 (566)
T ss_pred             cceeEEEcCCCcEEE-EEcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence            467788888887665 677779999999888755555443  678999999999987631     11     23668887


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC--EEE----
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR--TFV----  200 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~----  200 (340)
                      .++-....++  .....+.  +..|+.+..+++---.+.+.+|++..-+.... .-|...+..+.++|...  .++    
T Consensus       113 et~~~~s~~q--~k~Q~~W--~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvP  187 (566)
T KOG2315|consen  113 ETGVQRSQIQ--KKMQNGW--VPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVP  187 (566)
T ss_pred             ccceehhhee--hhhhcCc--ccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEcc
Confidence            7632111111  1111222  34455555555544556677777654322111 11233344444444311  111    


Q ss_pred             -EEeCCCcEEEE---------------------------------------------------------ECCCCeeeeEe
Q psy15421        201 -SGACDASAKLW---------------------------------------------------------DIRDGSCKQTF  222 (340)
Q Consensus       201 -sg~~dg~i~~w---------------------------------------------------------d~~~~~~~~~~  222 (340)
                       .++.-+.|++|                                                         +++...+...+
T Consensus       188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L  267 (566)
T KOG2315|consen  188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL  267 (566)
T ss_pred             CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence             12333344444                                                         33322222222


Q ss_pred             cCCCCCeEEEEEecCCCEEEEE--eCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCC---CcEEEE
Q psy15421        223 PGHESDINAVTFFPNGWAFATG--SDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD---FNCNVW  297 (340)
Q Consensus       223 ~~h~~~v~~v~~~~~~~~l~s~--s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---~~i~iw  297 (340)
                      . ..++|.++.|+|+++.|+.+  -.--.+.|||++. .++..+...    +=+++-|+|.|++|+.++.+   |.+.||
T Consensus       268 ~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~eg----pRN~~~fnp~g~ii~lAGFGNL~G~mEvw  341 (566)
T KOG2315|consen  268 L-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFPEG----PRNTAFFNPHGNIILLAGFGNLPGDMEVW  341 (566)
T ss_pred             C-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCCCC----CccceEECCCCCEEEEeecCCCCCceEEE
Confidence            2 36899999999999888764  3456789999874 455555432    24678999999999887654   789999


Q ss_pred             eCCCceeeeeeccCCcceEEEEECCCCCEEEEeeC------CCcEEecC
Q psy15421        298 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSW------DSFLRIWN  340 (340)
Q Consensus       298 ~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~------D~~i~iW~  340 (340)
                      |..+.+++..+..  ..-+-..|+|||++++++.-      |.-++||+
T Consensus       342 Dv~n~K~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh  388 (566)
T KOG2315|consen  342 DVPNRKLIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH  388 (566)
T ss_pred             eccchhhcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence            9999887776653  33345789999999998764      56778884

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.51  E-value=9.7e-11  Score=103.32  Aligned_cols=264  Identities=14%  Similarity=0.098  Sum_probs=159.1

Q ss_pred             EEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEE
Q psy15421         70 LVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCC  149 (340)
Q Consensus        70 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~  149 (340)
                      +++-..++.|.+.|..+.+.+..++........+.|+|||+++++.+.|+.+.++|+.+.+    ...++..-.. ...+
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~----~v~~i~~G~~-~~~i   83 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK----VVATIKVGGN-PRGI   83 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS----EEEEEE-SSE-EEEE
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc----EEEEEecCCC-cceE
Confidence            3456678999999999999998888765544557899999999999999999999998764    3333333222 3445


Q ss_pred             EEcCCC-eEEEE-eCCCeEEEEECCCCceEEEEecC-------CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeee
Q psy15421        150 RFLDDN-QIVTS-SGDMSCALWDIETGQQCASFIGH-------TGDVMSLSLAPDMRTFVSGAC-DASAKLWDIRDGSCK  219 (340)
Q Consensus       150 ~~~~~~-~l~~~-~~d~~v~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~sg~~-dg~i~~wd~~~~~~~  219 (340)
                      .+++++ +++.+ ..++.+.++|.++.+.+..+...       ...+..+..+|....++..-. -++|.+-|.......
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~  163 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL  163 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred             EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence            666665 44444 45899999999999888776532       345677877888886665554 588988897765432


Q ss_pred             e-EecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCcCCcEEEEeecC--CcccceEEEEEcCC----------CcEE
Q psy15421        220 Q-TFPGHESDINAVTFFPNGWAFATG-SDDATCRLFDIRADQELAMYSHD--NIICGITSVAFSRS----------GRLL  285 (340)
Q Consensus       220 ~-~~~~h~~~v~~v~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~s~~----------~~~l  285 (340)
                      . .............|+|++++|+.+ ..+..|-++|..+.+.+......  .+..++..+ -||.          +...
T Consensus       164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~  242 (369)
T PF02239_consen  164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFA  242 (369)
T ss_dssp             EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSE
T ss_pred             ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeecccccee
Confidence            2 222234556789999999987664 55678999999887766554321  111122221 1232          1222


Q ss_pred             EEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEe----eCCCcEEecC
Q psy15421        286 LAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATG----SWDSFLRIWN  340 (340)
Q Consensus       286 ~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~----s~D~~i~iW~  340 (340)
                      ++.-....+.+|+..+++.++.+...... .-+..+|++.+|...    ....+|.|+|
T Consensus       243 ~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD  300 (369)
T PF02239_consen  243 IPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID  300 (369)
T ss_dssp             EEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred             cccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence            12222224557888888888888766566 677889999999877    3346666654

...

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.51  E-value=3.5e-11  Score=109.25  Aligned_cols=231  Identities=16%  Similarity=0.135  Sum_probs=144.3

Q ss_pred             CeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC---CeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC
Q psy15421         77 GKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD---NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD  153 (340)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  153 (340)
                      ..|.++|....+ ...+..+...+....|+|+|++++....+   ..+.+|++.++..  ..   +..+...+....|++
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~---~~~~~~~~~~~~~sp  243 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EK---VASFPGMNGAPAFSP  243 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EE---eecCCCCccceEECC
Confidence            357788875333 34444455568888999999999887654   4788999876431  11   222334445567877


Q ss_pred             CC-eEE-EEeCC--CeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCeeeeEecCCC
Q psy15421        154 DN-QIV-TSSGD--MSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC-DA--SAKLWDIRDGSCKQTFPGHE  226 (340)
Q Consensus       154 ~~-~l~-~~~~d--~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~-dg--~i~~wd~~~~~~~~~~~~h~  226 (340)
                      ++ .|+ +.+.+  ..|.+||+.+++. ..+..+........|+|+++.++..+. ++  .|.++|+..++.. .+..+.
T Consensus       244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~  321 (417)
T TIGR02800       244 DGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRG  321 (417)
T ss_pred             CCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCC
Confidence            65 454 33333  4588899987653 344445455567789999998776554 33  5777788766543 333345


Q ss_pred             CCeEEEEEecCCCEEEEEeCCC---cEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCC---cEEEEeCC
Q psy15421        227 SDINAVTFFPNGWAFATGSDDA---TCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDF---NCNVWDSM  300 (340)
Q Consensus       227 ~~v~~v~~~~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~---~i~iw~~~  300 (340)
                      ..+..+.|+|+|++++..+.++   .|.+||+.++.... +....   ......|+|++++|+..+.++   .+++.+ .
T Consensus       322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~---~~~~p~~spdg~~l~~~~~~~~~~~l~~~~-~  396 (417)
T TIGR02800       322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDTG---LDESPSFAPNGRMILYATTRGGRGVLGLVS-T  396 (417)
T ss_pred             CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCCC---CCCCceECCCCCEEEEEEeCCCcEEEEEEE-C
Confidence            5667889999999999888776   78899987654322 22111   123458999999888877654   344444 2


Q ss_pred             CceeeeeeccCCcceEEEEE
Q psy15421        301 KTERAGILAGHDNRVSCLGV  320 (340)
Q Consensus       301 ~~~~~~~~~~h~~~i~~~~~  320 (340)
                      ++.....+..+.+.+...+|
T Consensus       397 ~g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       397 DGRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             CCceeeECCCCCCCcCCCCC
Confidence            34444444433444444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1.3e-11  Score=112.29  Aligned_cols=202  Identities=17%  Similarity=0.155  Sum_probs=131.1

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeC---CCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEE-EeCCC--eE
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQ---DGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVAC-GGLDN--IC  121 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~-~~~d~--~v  121 (340)
                      .+.+..|...+.+..|+||++.|+.++.   +..|++||+.+++.... ...........|+|+|+.++. .+.++  .+
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I  274 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRRLALTLSRDGNPEI  274 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence            3556677788999999999999998774   34699999987765332 222334456789999997754 45555  47


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeC-CCe--EEEEECCCCceEEEEecCCCCeEEEEEcCCCC
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSG-DMS--CALWDIETGQQCASFIGHTGDVMSLSLAPDMR  197 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d~~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  197 (340)
                      .+|++.++.  .   ..+..+........|++++ .++.++. ++.  +.++|+.+++. ..+..+.......+|+|+++
T Consensus       275 y~~d~~~g~--~---~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~  348 (433)
T PRK04922        275 YVMDLGSRQ--L---TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNYNARASVSPDGK  348 (433)
T ss_pred             EEEECCCCC--e---EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCC
Confidence            777876543  2   2233333334456777765 4555543 444  66677766653 33333334455789999999


Q ss_pred             EEEEEeCCC---cEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCcCC
Q psy15421        198 TFVSGACDA---SAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDD---ATCRLFDIRAD  258 (340)
Q Consensus       198 ~~~sg~~dg---~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d---~~i~iwd~~~~  258 (340)
                      .++..+.++   .|.+||+.++... .+. +........|+|||+.++..+.+   ..|.+++....
T Consensus       349 ~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        349 KIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             EEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            887655433   6899999887654 332 22234567899999987766653   35777777543

>KOG2321|consensus

Probab=99.50  E-value=5.6e-12  Score=110.47  Aligned_cols=237  Identities=14%  Similarity=0.201  Sum_probs=159.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEe-CCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCC
Q psy15421         96 RSSWVMTCAYAPSGSFVACGG-LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIET  173 (340)
Q Consensus        96 ~~~~i~~v~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~  173 (340)
                      +....+.+..+|||.|+.+.| .--.|++||+.+-.  ++..+-+  ....|.....+++ ...+.-..|.+|.+.... 
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhl--Dae~V~feiLsDD~SK~v~L~~DR~IefHak~-  124 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHL--DAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-  124 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecc--cccceeEEEeccchhhheEeecCceeeehhhc-
Confidence            345567889999999976544 55579999986532  2222211  1233444444443 234444567777665442 


Q ss_pred             CceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy15421        174 GQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLF  253 (340)
Q Consensus       174 ~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iw  253 (340)
                      |.....-  -......++++.-.--++.++....|.-++++.|..+..++...+.++++..++-...|++|+.||.+.+|
T Consensus       125 G~hy~~R--IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw  202 (703)
T KOG2321|consen  125 GRHYRTR--IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW  202 (703)
T ss_pred             Ceeeeee--cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEe
Confidence            2211110  11223455555433345566667788888999999888888777899999999998899999999999999


Q ss_pred             eCcCCcEEEEeecCC---------cccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeee-ccCCcceEEEEECCC
Q psy15421        254 DIRADQELAMYSHDN---------IICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGIL-AGHDNRVSCLGVTED  323 (340)
Q Consensus       254 d~~~~~~~~~~~~~~---------~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~-~~h~~~i~~~~~s~d  323 (340)
                      |.+....+..+....         ..-.|+++.|+.+|-.+++|+.+|.+.|||+...+++..- .+..-+|..+.|-+.
T Consensus       203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT  282 (703)
T ss_pred             cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence            999876655443211         1124999999999999999999999999999887665433 234568999999664


Q ss_pred             --CCEEEEeeCCCcEEecC
Q psy15421        324 --GMAVATGSWDSFLRIWN  340 (340)
Q Consensus       324 --~~~l~s~s~D~~i~iW~  340 (340)
                        +..|+|.. ...++|||
T Consensus       283 ~~q~~v~S~D-k~~~kiWd  300 (703)
T KOG2321|consen  283 DQQNKVVSMD-KRILKIWD  300 (703)
T ss_pred             CCCceEEecc-hHHhhhcc
Confidence              44565532 46788996

>KOG0974|consensus

Probab=99.50  E-value=9.3e-13  Score=122.50  Aligned_cols=196  Identities=23%  Similarity=0.310  Sum_probs=147.9

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCC-cce-EEEEE--cCCC-eEEEEeCCCeEEEEEC
Q psy15421         97 SSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYL-SCCRF--LDDN-QIVTSSGDMSCALWDI  171 (340)
Q Consensus        97 ~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~-~~v-~~~~~--~~~~-~l~~~~~d~~v~iwd~  171 (340)
                      ..+|....+....+.++.+..++.+.+|+.....    +..+..... ... .++.+  ..+. ++++|+--+.+.+|++
T Consensus        87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~----~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~  162 (967)
T KOG0974|consen   87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSS----VLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKP  162 (967)
T ss_pred             cccccccchhhhcceEEEEEcCceEEEEecccCc----eehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEec
Confidence            3455555666678889999999999999976532    222221111 111 11222  2222 5778888899999998


Q ss_pred             CCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeee-EecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy15421        172 ETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQ-TFPGHESDINAVTFFPNGWAFATGSDDATC  250 (340)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i  250 (340)
                      ...+.-..+.+|.+.+..+.++.|+.++++.|.|.++|+|++.+.+... ..-+|..+|..+.|+|+  .++|++.|-++
T Consensus       163 ~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctc  240 (967)
T KOG0974|consen  163 HEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTC  240 (967)
T ss_pred             cccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEE
Confidence            7444444688999999999999999999999999999999999887654 55589999999999998  99999999999


Q ss_pred             EEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCC
Q psy15421        251 RLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM  300 (340)
Q Consensus       251 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~  300 (340)
                      ++|+....+. ..+. ......+..++..++..++++++.|+.+++|+..
T Consensus       241 rvW~~~~~~l-~~y~-~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  241 RVWGVNGTQL-EVYD-EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             EEEeccccee-hhhh-hhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence            9997764433 2332 2223468999999999999999999999999864

>KOG4547|consensus

Probab=99.49  E-value=2.4e-11  Score=106.95  Aligned_cols=189  Identities=17%  Similarity=0.270  Sum_probs=145.9

Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCC----C-----cEEEEEECC--------------CCCEEEEEeCCCeE
Q psy15421         65 SDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRS----S-----WVMTCAYAP--------------SGSFVACGGLDNIC  121 (340)
Q Consensus        65 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~-----~i~~v~~~~--------------~~~~l~~~~~d~~v  121 (340)
                      |...++|....||.+++||...++....+....    .     +...+.++|              +-..++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            455689999999999999998877655543211    1     222333343              33567888889999


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEE
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV  200 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  200 (340)
                      .+|+...++  +.....-.+|.+.|.++.+..+ +.|-+++.|..+..|+....+.+..+.+....+.+++.+||+..++
T Consensus        83 ~~ys~~~g~--it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~  160 (541)
T KOG4547|consen   83 LLYSVAGGE--ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL  160 (541)
T ss_pred             EEEEecCCe--EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence            999987554  2222233578899998887654 5788999999999999999999999998889999999999999988


Q ss_pred             EEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecC-----CCEEEE-EeCCCcEEEEeCcC
Q psy15421        201 SGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPN-----GWAFAT-GSDDATCRLFDIRA  257 (340)
Q Consensus       201 sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~-----~~~l~s-~s~d~~i~iwd~~~  257 (340)
                      +++  ++|++||+++++.+..|.+|.++|+++.|-.+     |.++.+ ...+.-+.+|-+..
T Consensus       161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            765  78999999999999999999999999999876     566554 44566677886653

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.49  E-value=2.3e-09  Score=94.56  Aligned_cols=262  Identities=14%  Similarity=0.149  Sum_probs=160.1

Q ss_pred             CeEEEEeC--CCCCee--EEeeCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEccCCCCceEEEEeecCCCcceEE
Q psy15421         77 GKLIVWDS--YTTNKV--HAIPLRSSWVMTCAYAPSGSFVACGGL----DNICSIYSLKTREGNVRVSRELPGHTGYLSC  148 (340)
Q Consensus        77 ~~i~iwd~--~~~~~~--~~~~~~~~~i~~v~~~~~~~~l~~~~~----d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~  148 (340)
                      +.|++|+.  .+++..  .... .......++++|++++|++...    ++.|..|.+....+.+......+.....-..
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~   91 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH   91 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence            68888876  333321  1211 2233456788999999999877    4689999987654555544444422222234


Q ss_pred             EEEcCCC-eEEEEe-CCCeEEEEECCC-CceEEE--Eec-----------CCCCeEEEEEcCCCCEEEEEe-CCCcEEEE
Q psy15421        149 CRFLDDN-QIVTSS-GDMSCALWDIET-GQQCAS--FIG-----------HTGDVMSLSLAPDMRTFVSGA-CDASAKLW  211 (340)
Q Consensus       149 ~~~~~~~-~l~~~~-~d~~v~iwd~~~-~~~~~~--~~~-----------~~~~v~~~~~~~~~~~~~sg~-~dg~i~~w  211 (340)
                      +...+++ .++.+. .++.|.++++.. +.....  ...           ....+-++.++|+++++++.. ....|.+|
T Consensus        92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~  171 (345)
T PF10282_consen   92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY  171 (345)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence            5555554 444444 599999999976 333222  111           123467899999999777643 46789999


Q ss_pred             ECCCCe--ee--eEec-CCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCc--CCcE--EEEeecC--Cc--ccceEEEE
Q psy15421        212 DIRDGS--CK--QTFP-GHESDINAVTFFPNGWAFATG-SDDATCRLFDIR--ADQE--LAMYSHD--NI--ICGITSVA  277 (340)
Q Consensus       212 d~~~~~--~~--~~~~-~h~~~v~~v~~~~~~~~l~s~-s~d~~i~iwd~~--~~~~--~~~~~~~--~~--~~~i~~~~  277 (340)
                      ++....  +.  ..++ ......+.++|+|+++++... -.++.|.++++.  .+..  +......  ..  ......++
T Consensus       172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  251 (345)
T PF10282_consen  172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA  251 (345)
T ss_dssp             EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred             EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence            987654  32  2222 234567899999999876554 557889999988  3321  1111111  11  11467899


Q ss_pred             EcCCCcEEEEEe-CCCcEEEEeCC--Cc--eeeeeeccCCcceEEEEECCCCCEEEEeeC-CCcEEec
Q psy15421        278 FSRSGRLLLAGY-DDFNCNVWDSM--KT--ERAGILAGHDNRVSCLGVTEDGMAVATGSW-DSFLRIW  339 (340)
Q Consensus       278 ~s~~~~~l~~g~-~d~~i~iw~~~--~~--~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~-D~~i~iW  339 (340)
                      ++|||++|.++. ....|.+|++.  ++  ..+..+......-..++++|+|++|+.+.. ++.|.+|
T Consensus       252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf  319 (345)
T PF10282_consen  252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF  319 (345)
T ss_dssp             E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence            999999987755 56789999973  22  233333333345788999999999887764 5677776

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2394|consensus

Probab=99.49  E-value=1.6e-12  Score=112.99  Aligned_cols=179  Identities=19%  Similarity=0.296  Sum_probs=128.1

Q ss_pred             CcEEEEEEcCCC-CeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeC-----CCeEEEEEccCC
Q psy15421         56 AKIYAMHWGSDS-RNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGL-----DNICSIYSLKTR  129 (340)
Q Consensus        56 ~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~-----d~~v~i~~~~~~  129 (340)
                      ..|+++.|-|-+ ..++.+-.+|.++++|.+-.   .   ....  .+-...+++..++..-.     ++.+.-|-+   
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~---~---~~t~--p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~---  288 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV---C---GATA--PSYQALKDGDQFAILTSKSKKTRNPVARWHI---  288 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeecccc---c---cCCC--CcccccCCCCeeEEeeeeccccCCccceeEe---
Confidence            689999998854 45566678999999986210   0   0000  01112233433332111     111112211   


Q ss_pred             CCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q psy15421        130 EGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASA  208 (340)
Q Consensus       130 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i  208 (340)
                                  -.+.+...+|++++ .|++.+.||.++|+|..+.+.+..+...-+...|++|+||++++++|+.|-.|
T Consensus       289 ------------~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLV  356 (636)
T KOG2394|consen  289 ------------GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLV  356 (636)
T ss_pred             ------------ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceE
Confidence                        12356667777665 68889999999999999877766666666789999999999999999999999


Q ss_pred             EEEECCCCeeeeEecCCCCCeEEEEEec------------------------------------------------CCCE
Q psy15421        209 KLWDIRDGSCKQTFPGHESDINAVTFFP------------------------------------------------NGWA  240 (340)
Q Consensus       209 ~~wd~~~~~~~~~~~~h~~~v~~v~~~~------------------------------------------------~~~~  240 (340)
                      .+|.+...+.+..-++|.+.|..|+|+|                                                ....
T Consensus       357 tVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YR  436 (636)
T KOG2394|consen  357 TVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYR  436 (636)
T ss_pred             EEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEE
Confidence            9999999999999999999999999983                                                0135


Q ss_pred             EEEEeCCCcEEEEeCcC
Q psy15421        241 FATGSDDATCRLFDIRA  257 (340)
Q Consensus       241 l~s~s~d~~i~iwd~~~  257 (340)
                      |.+.+.|-.+.+||+..
T Consensus       437 fGSVGqDTqlcLWDlte  453 (636)
T KOG2394|consen  437 FGSVGQDTQLCLWDLTE  453 (636)
T ss_pred             eecccccceEEEEecch
Confidence            78899999999999864

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.49  E-value=1.7e-09  Score=95.41  Aligned_cols=263  Identities=17%  Similarity=0.204  Sum_probs=161.5

Q ss_pred             cEEEEEEcCCCCeEEEEeC----CCeEEEEeCCCC--C--eeEEeeCCCCcEEEEEECCCCCEEEEEeC-CCeEEEEEcc
Q psy15421         57 KIYAMHWGSDSRNLVSASQ----DGKLIVWDSYTT--N--KVHAIPLRSSWVMTCAYAPSGSFVACGGL-DNICSIYSLK  127 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~----d~~i~iwd~~~~--~--~~~~~~~~~~~i~~v~~~~~~~~l~~~~~-d~~v~i~~~~  127 (340)
                      .-..++++|++++|.++..    ++.|..|.+...  .  .+............++++|++++|+++.. ++.+.++++.
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence            4456888999999998876    578998887654  2  22333323344557889999999998874 7899999997


Q ss_pred             CCCCceEEEEeec-----------CCCcceEEEEEcCCCe-EE-EEeCCCeEEEEECCCCc--eE--EEE-ecCCCCeEE
Q psy15421        128 TREGNVRVSRELP-----------GHTGYLSCCRFLDDNQ-IV-TSSGDMSCALWDIETGQ--QC--ASF-IGHTGDVMS  189 (340)
Q Consensus       128 ~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~-l~-~~~~d~~v~iwd~~~~~--~~--~~~-~~~~~~v~~  189 (340)
                      .. +.........           .......++.+.+++. ++ +--+...|.+|++....  ..  ..+ .........
T Consensus       118 ~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  118 DD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             TT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             CC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            64 2222211111           1123455677777764 33 33456689999987654  21  222 234456889


Q ss_pred             EEEcCCCCEEEE-EeCCCcEEEEECC--CCee--eeEecC----C--CCCeEEEEEecCCCEEEEEe-CCCcEEEEeCcC
Q psy15421        190 LSLAPDMRTFVS-GACDASAKLWDIR--DGSC--KQTFPG----H--ESDINAVTFFPNGWAFATGS-DDATCRLFDIRA  257 (340)
Q Consensus       190 ~~~~~~~~~~~s-g~~dg~i~~wd~~--~~~~--~~~~~~----h--~~~v~~v~~~~~~~~l~s~s-~d~~i~iwd~~~  257 (340)
                      ++|+|++++++. ...+++|.++++.  .+..  +..+..    .  ......|+++|||+++.++. .+.+|.+|++..
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~  276 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP  276 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence            999999997765 5568999999987  4432  222211    1  12577899999999876554 567899999842


Q ss_pred             -CcEEEEeecCCc-ccceEEEEEcCCCcEEEEEe-CCCcEEEEeC--CCceeeeeec-cCCcceEEEEE
Q psy15421        258 -DQELAMYSHDNI-ICGITSVAFSRSGRLLLAGY-DDFNCNVWDS--MKTERAGILA-GHDNRVSCLGV  320 (340)
Q Consensus       258 -~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~g~-~d~~i~iw~~--~~~~~~~~~~-~h~~~i~~~~~  320 (340)
                       ...+........ ......++++|+|++|+++. .++.|.+|++  .++.....-. -......|+.|
T Consensus       277 ~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  277 ATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             TTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             CCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence             222222211111 12378899999999999877 5678999975  4554333221 12344556655

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2139|consensus

Probab=99.48  E-value=5.7e-12  Score=104.64  Aligned_cols=179  Identities=15%  Similarity=0.240  Sum_probs=125.2

Q ss_pred             EEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----Ce---
Q psy15421        147 SCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIG-HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRD----GS---  217 (340)
Q Consensus       147 ~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~----~~---  217 (340)
                      ..+.|+.. ..++.+..|-.|++||-+. +....+.. ....|.|++|-|.+..-++-+.-+-|.+|....    +.   
T Consensus       102 r~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~  180 (445)
T KOG2139|consen  102 RGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIR  180 (445)
T ss_pred             eeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccc
Confidence            34455442 2467788999999999876 33333332 345699999999766544445566789997532    11   


Q ss_pred             -------eeeEecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEe
Q psy15421        218 -------CKQTFPGHESDINAVTFFPNGWAFATGSD-DATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY  289 (340)
Q Consensus       218 -------~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  289 (340)
                             .+...++| .+|+++.|.+||..+++++. |..|.|||..+++......  .-..+++-+.||||+.+|++++
T Consensus       181 ~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~--~glgg~slLkwSPdgd~lfaAt  257 (445)
T KOG2139|consen  181 MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP--KGLGGFSLLKWSPDGDVLFAAT  257 (445)
T ss_pred             cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc--cCCCceeeEEEcCCCCEEEEec
Confidence                   11223456 68999999999999999876 5779999999876554331  1224588899999999999999


Q ss_pred             CCCcEEEEe-CCCceeeeeeccCCcceEEEEECCCCCEEEEe
Q psy15421        290 DDFNCNVWD-SMKTERAGILAGHDNRVSCLGVTEDGMAVATG  330 (340)
Q Consensus       290 ~d~~i~iw~-~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~  330 (340)
                      -|+..++|+ ..+...+.-..+ .+.|...+|+|+|++|+-+
T Consensus       258 ~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~  298 (445)
T KOG2139|consen  258 CDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFA  298 (445)
T ss_pred             ccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEE
Confidence            999999994 333333332223 3489999999999976643

>KOG4547|consensus

Probab=99.47  E-value=1.3e-11  Score=108.62  Aligned_cols=181  Identities=18%  Similarity=0.251  Sum_probs=142.5

Q ss_pred             CeEEEEeCCCeEEEEECCCCceEEEEec---CCCCeEEEEEc--------------------CCCCEEEEEeCCCcEEEE
Q psy15421        155 NQIVTSSGDMSCALWDIETGQQCASFIG---HTGDVMSLSLA--------------------PDMRTFVSGACDASAKLW  211 (340)
Q Consensus       155 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~--------------------~~~~~~~sg~~dg~i~~w  211 (340)
                      .+++...+||.+++|+...++....+..   ..+...+..|.                    .+...++-|...|.|.+|
T Consensus         6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y   85 (541)
T KOG4547|consen    6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY   85 (541)
T ss_pred             heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence            4678888999999999998887666543   23334444432                    133466778899999999


Q ss_pred             ECCCCeeeeEec--CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEe
Q psy15421        212 DIRDGSCKQTFP--GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY  289 (340)
Q Consensus       212 d~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  289 (340)
                      +...++....+.  .|.+.|+++.+..+-..|.|++.|+.+-.|+....+....+.....  .+.+++.+|||++|++|+
T Consensus        86 s~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~--~~~sl~is~D~~~l~~as  163 (541)
T KOG4547|consen   86 SVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP--LVSSLCISPDGKILLTAS  163 (541)
T ss_pred             EecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC--ccceEEEcCCCCEEEecc
Confidence            999998766664  6889999999998888999999999999999988766655433222  377899999999999987


Q ss_pred             CCCcEEEEeCCCceeeeeeccCCcceEEEEECCC-----CCEEEE-eeCCCcEEec
Q psy15421        290 DDFNCNVWDSMKTERAGILAGHDNRVSCLGVTED-----GMAVAT-GSWDSFLRIW  339 (340)
Q Consensus       290 ~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d-----~~~l~s-~s~D~~i~iW  339 (340)
                      .  .|++|++++.+.+..+.||.++|++++|..+     |.++++ ...+.-|.+|
T Consensus       164 ~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w  217 (541)
T KOG4547|consen  164 R--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW  217 (541)
T ss_pred             c--eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence            6  6999999999999999999999999999877     666554 4445556666

>KOG0280|consensus

Probab=99.45  E-value=2.9e-11  Score=97.87  Aligned_cols=259  Identities=19%  Similarity=0.152  Sum_probs=165.1

Q ss_pred             CCeEEEEeCCCCCeeE--Ee-eCCCCcEEEEEEC---CCCC-EEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcce--
Q psy15421         76 DGKLIVWDSYTTNKVH--AI-PLRSSWVMTCAYA---PSGS-FVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYL--  146 (340)
Q Consensus        76 d~~i~iwd~~~~~~~~--~~-~~~~~~i~~v~~~---~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v--  146 (340)
                      -|.+.++++.+.+...  ++ ....+.+..+.|.   .+|. .++-+...|.+++|......... ..+.+......+  
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~-~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV-HLRGLSSKKISVVE  123 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeee-eecccchhhhhhee
Confidence            3567788776655432  11 1112334455554   2444 45667778899999876543222 222222222222  


Q ss_pred             -EEEEEcCC-CeEEEEeCCCeEEEEECCCCc--eEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-Ceeee
Q psy15421        147 -SCCRFLDD-NQIVTSSGDMSCALWDIETGQ--QCASFIGHTGDVMSLSLAPDM-RTFVSGACDASAKLWDIRD-GSCKQ  220 (340)
Q Consensus       147 -~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~~sg~~dg~i~~wd~~~-~~~~~  220 (340)
                       .++-|.+. ..++.+..+|.+.+-+...+.  .++..++|.-+.....|+... +++++|+.|+.+.-||+|. ++.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence             23445444 357778788888855544332  334678899999999997643 5788999999999999993 33332


Q ss_pred             E-ecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCcC-CcEEEEeecCCcccceEEEEEcCC--CcEEEEEeCCCcEE
Q psy15421        221 T-FPGHESDINAVTFFP-NGWAFATGSDDATCRLFDIRA-DQELAMYSHDNIICGITSVAFSRS--GRLLLAGYDDFNCN  295 (340)
Q Consensus       221 ~-~~~h~~~v~~v~~~~-~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~g~~d~~i~  295 (340)
                      . -+.|...|.++.-+| .+.++++|+.|-.|++||.++ ++++..   .....+|..+..+|.  ++.|+++..+| .+
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~---~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~k  279 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK---AKVGGGVWRIKHHPEIFHRLLAACMHNG-AK  279 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc---CccccceEEEEecchhhhHHHHHHHhcC-ce
Confidence            2 456888898888776 578999999999999999984 455432   223367999999986  34566666666 56


Q ss_pred             EEeCCCc--e---eeeeeccCCcceEEEEECCCCCEEEEeeC-CCcEE-ec
Q psy15421        296 VWDSMKT--E---RAGILAGHDNRVSCLGVTEDGMAVATGSW-DSFLR-IW  339 (340)
Q Consensus       296 iw~~~~~--~---~~~~~~~h~~~i~~~~~s~d~~~l~s~s~-D~~i~-iW  339 (340)
                      |-+....  +   .......|.+-.+.-.|.....+|++||. |..++ +|
T Consensus       280 i~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W  330 (339)
T KOG0280|consen  280 ILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW  330 (339)
T ss_pred             EEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence            6654432  2   23345567777777777444467888764 77766 66

>KOG2041|consensus

Probab=99.42  E-value=6.4e-11  Score=106.59  Aligned_cols=275  Identities=14%  Similarity=0.194  Sum_probs=193.3

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC----e-----------eEEeeCCCCcEEEEEECCCCCEEEEEeCCC
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN----K-----------VHAIPLRSSWVMTCAYAPSGSFVACGGLDN  119 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~-----------~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~  119 (340)
                      +....++.|+.+..+++.||.||.+++-.+.+..    .           -+++.+|+..|..+.|..+...|-++..+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            3467899999999999999999999999664321    1           135678999999999999999999999999


Q ss_pred             eEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEE-EEecCCCCeEEEEEcCCCC
Q psy15421        120 ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCA-SFIGHTGDVMSLSLAPDMR  197 (340)
Q Consensus       120 ~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~  197 (340)
                      .|.+|-+-.+  .+.....-....+.|.++.|..+ .++.....||.|.+=.+..+..-. .+.+  .....+.|++|.+
T Consensus        94 lIiVWmlykg--sW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~  169 (1189)
T KOG2041|consen   94 LIIVWMLYKG--SWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLE  169 (1189)
T ss_pred             eEEEEeeecc--cHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHH
Confidence            9999987543  22111122334566778888655 467778889988877766543211 1111  1234788999999


Q ss_pred             EEEEEeCCCcEEEEECCCCe-------eee----EecCCCCCeEEEEEe--------cCCCEEEEEeCCCcEEEEeCcCC
Q psy15421        198 TFVSGACDASAKLWDIRDGS-------CKQ----TFPGHESDINAVTFF--------PNGWAFATGSDDATCRLFDIRAD  258 (340)
Q Consensus       198 ~~~sg~~dg~i~~wd~~~~~-------~~~----~~~~h~~~v~~v~~~--------~~~~~l~s~s~d~~i~iwd~~~~  258 (340)
                      .++.+-..|.+.++|.+-+-       +..    .+......|..+.|.        |+...|+.+-.+|.+.|-.-.+.
T Consensus       170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND  249 (1189)
T KOG2041|consen  170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND  249 (1189)
T ss_pred             HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence            99999999999999975321       111    111122335556654        57789999999999988765444


Q ss_pred             cEEEEeecCCcccceEEEEEcCCCcEEEEEeCC---------CcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEE
Q psy15421        259 QELAMYSHDNIICGITSVAFSRSGRLLLAGYDD---------FNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVAT  329 (340)
Q Consensus       259 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---------~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s  329 (340)
                      .....+...   ..+..+.|+++|..|++++.+         ..|.+|. .-++..+.+.-....|++++|-..|-.++-
T Consensus       250 ~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~  325 (1189)
T KOG2041|consen  250 PEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAI  325 (1189)
T ss_pred             CCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEE
Confidence            333333222   237788999999999998765         2455554 566777788777889999999999988876


Q ss_pred             eeCCCcEEe
Q psy15421        330 GSWDSFLRI  338 (340)
Q Consensus       330 ~s~D~~i~i  338 (340)
                      +- |+.|.+
T Consensus       326 Av-dsfiyf  333 (1189)
T KOG2041|consen  326 AV-DSFIYF  333 (1189)
T ss_pred             Ee-cceEEE
Confidence            65 666653

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=9.8e-10  Score=100.07  Aligned_cols=231  Identities=14%  Similarity=0.132  Sum_probs=139.4

Q ss_pred             eEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC-C--eEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC
Q psy15421         78 KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD-N--ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD  154 (340)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d-~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  154 (340)
                      .|.++|....+. ..+-.....+....|+|||+.++..+.+ +  .+.++++.++.  .......+++   .....|+++
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~--~~~lt~~~g~---~~~~~wSPD  272 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV--REKVTSFPGI---NGAPRFSPD  272 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC--eEEecCCCCC---cCCeeECCC
Confidence            566667644432 3333445567888999999988876543 3  46667765543  2222222222   234567776


Q ss_pred             C-eEEE-EeCCCe--EEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCeeeeE-ecCCC
Q psy15421        155 N-QIVT-SSGDMS--CALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC-DA--SAKLWDIRDGSCKQT-FPGHE  226 (340)
Q Consensus       155 ~-~l~~-~~~d~~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~-dg--~i~~wd~~~~~~~~~-~~~h~  226 (340)
                      + .++. ...++.  |.++|+.+++. ..+..+.......+|+||++.++..+. ++  .|.++|+.+++.... +.+  
T Consensus       273 G~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g--  349 (448)
T PRK04792        273 GKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG--  349 (448)
T ss_pred             CCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC--
Confidence            5 4543 445554  77788887654 444445555678899999998765443 44  466667777664332 222  


Q ss_pred             CCeEEEEEecCCCEEEEEeC-CC--cEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCC-C--cEEEEeCC
Q psy15421        227 SDINAVTFFPNGWAFATGSD-DA--TCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD-F--NCNVWDSM  300 (340)
Q Consensus       227 ~~v~~v~~~~~~~~l~s~s~-d~--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-~--~i~iw~~~  300 (340)
                      ......+|+|||++++..+. ++  .|.++|+.+++... +.....   .....|+|+|+.|+..+.+ +  .+.+++. 
T Consensus       350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~---d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-  424 (448)
T PRK04792        350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRL---DESPSVAPNGTMVIYSTTYQGKQVLAAVSI-  424 (448)
T ss_pred             CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCCC---CCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence            22345689999998876654 34  35556776654432 211111   1234799999988775543 3  3666674 


Q ss_pred             CceeeeeeccCCcceEEEEECC
Q psy15421        301 KTERAGILAGHDNRVSCLGVTE  322 (340)
Q Consensus       301 ~~~~~~~~~~h~~~i~~~~~s~  322 (340)
                      ++.....+..+.+.+...+|||
T Consensus       425 ~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        425 DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CCCceEECcCCCCCcCCCccCC
Confidence            5556666666667778888887

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.38  E-value=8.7e-10  Score=95.73  Aligned_cols=273  Identities=16%  Similarity=0.145  Sum_probs=174.2

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCe---------------EEEEeCCCCCeeEEeeCCCCc--EE-EEEECCCCCEEEEEeC
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGK---------------LIVWDSYTTNKVHAIPLRSSW--VM-TCAYAPSGSFVACGGL  117 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~---------------i~iwd~~~~~~~~~~~~~~~~--i~-~v~~~~~~~~l~~~~~  117 (340)
                      ..|..+.|+|.+++|.|=+..+.               +.+||..++..+..+.....+  .. -+.|+.+.+|+|-. .
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v  150 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V  150 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence            57899999999999998764443               999999999998888765544  33 56799998887655 3


Q ss_pred             CCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC---CeEEE-----EeCCCeEEEEECCCCceEEEEecCCCCeEE
Q psy15421        118 DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD---NQIVT-----SSGDMSCALWDIETGQQCASFIGHTGDVMS  189 (340)
Q Consensus       118 d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~l~~-----~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  189 (340)
                      ...+.|+++ ++.-.......+.  ...+....+++.   ..|+.     ...+.++++|.+..+..+..-.-....-..
T Consensus       151 ~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q  227 (561)
T COG5354         151 GSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ  227 (561)
T ss_pred             cCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence            445788886 3221110111111  122333334433   12222     356788999999866654332222223446


Q ss_pred             EEEcCCCCEEEEE-----------eCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEe--CCCcEEEEeCc
Q psy15421        190 LSLAPDMRTFVSG-----------ACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGS--DDATCRLFDIR  256 (340)
Q Consensus       190 ~~~~~~~~~~~sg-----------~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s--~d~~i~iwd~~  256 (340)
                      +.|++.+++++.-           -.+..+.|++++...+.... ...++|...+|.|.+..|++.+  .+-.+.++|++
T Consensus       228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr  306 (561)
T COG5354         228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR  306 (561)
T ss_pred             EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccc
Confidence            7788877765421           12356778887744433332 5678999999999988887655  67889999998


Q ss_pred             CCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCC---CcEEEEeCCCcee-eeeeccCCcceEEEEECCCCCEEEEee-
Q psy15421        257 ADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD---FNCNVWDSMKTER-AGILAGHDNRVSCLGVTEDGMAVATGS-  331 (340)
Q Consensus       257 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---~~i~iw~~~~~~~-~~~~~~h~~~i~~~~~s~d~~~l~s~s-  331 (340)
                      .. ... +..+..   =+.+.|+|.+++++.++-|   |.+.+|+....-. ...+.+-  ...-+.||||++++.+.- 
T Consensus       307 ~N-l~~-~~Pe~~---rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~t  379 (561)
T COG5354         307 GN-LRF-YFPEQK---RNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTT  379 (561)
T ss_pred             cc-eEE-ecCCcc---cccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCC
Confidence            65 333 222222   3467899999999987665   6789999654433 3244332  223467999999887653 


Q ss_pred             -----CCCcEEecC
Q psy15421        332 -----WDSFLRIWN  340 (340)
Q Consensus       332 -----~D~~i~iW~  340 (340)
                           .|..|+||+
T Consensus       380 s~k~~~Dn~i~l~~  393 (561)
T COG5354         380 SEKLRVDNSIKLWD  393 (561)
T ss_pred             CcccccCcceEEEE
Confidence                 266788885

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=1.2e-09  Score=99.46  Aligned_cols=233  Identities=11%  Similarity=0.028  Sum_probs=142.9

Q ss_pred             eEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC---CeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC
Q psy15421         78 KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD---NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD  154 (340)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  154 (340)
                      .|.++|....+ ...+..+...+....|+|||+.|+..+.+   ..+.+|++.++.  ......   ..+......|+++
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~--~~~l~~---~~g~~~~~~~SpD  253 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR--REQITN---FEGLNGAPAWSPD  253 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC--EEEccC---CCCCcCCeEECCC
Confidence            46777766443 34444556678889999999998876544   357777876543  122112   2223334667776


Q ss_pred             C-eEE-EEeCCC--eEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCeeeeEecCCCC
Q psy15421        155 N-QIV-TSSGDM--SCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC-DA--SAKLWDIRDGSCKQTFPGHES  227 (340)
Q Consensus       155 ~-~l~-~~~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~-dg--~i~~wd~~~~~~~~~~~~h~~  227 (340)
                      + .++ +...++  .|.+||+.+++. ..+..+........|+||++.++..+. +|  .|.++|+.+++...... ...
T Consensus       254 G~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~  331 (430)
T PRK00178        254 GSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGN  331 (430)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCC
Confidence            5 454 333344  688889987654 345555555667889999997765543 33  57777887776433221 122


Q ss_pred             CeEEEEEecCCCEEEEEeCC-C--cEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCC---CcEEEEeCCC
Q psy15421        228 DINAVTFFPNGWAFATGSDD-A--TCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD---FNCNVWDSMK  301 (340)
Q Consensus       228 ~v~~v~~~~~~~~l~s~s~d-~--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---~~i~iw~~~~  301 (340)
                      ......|+|+|+.++..+.+ +  .|.++|+.+++... +.....   .....|+|+|+.++..+.+   ..+.+++. .
T Consensus       332 ~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~---~~~p~~spdg~~i~~~~~~~g~~~l~~~~~-~  406 (430)
T PRK00178        332 YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSL---DESPSVAPNGTMLIYATRQQGRGVLMLVSI-N  406 (430)
T ss_pred             CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCCC---CCCceECCCCCEEEEEEecCCceEEEEEEC-C
Confidence            23457899999998876653 3  47888987765432 222211   1245899999998876643   34566665 3


Q ss_pred             ceeeeeeccCCcceEEEEECCC
Q psy15421        302 TERAGILAGHDNRVSCLGVTED  323 (340)
Q Consensus       302 ~~~~~~~~~h~~~i~~~~~s~d  323 (340)
                      +.....+..+.+.+...+|||-
T Consensus       407 g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        407 GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CCceEECcCCCCCcCCCccCCC
Confidence            4444445555667777788773

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.37  E-value=1.2e-08  Score=88.40  Aligned_cols=253  Identities=13%  Similarity=0.064  Sum_probs=150.7

Q ss_pred             CeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeC----------CCeEEEEEccCCCCceEEEEeecC--C--
Q psy15421         77 GKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGL----------DNICSIYSLKTREGNVRVSRELPG--H--  142 (340)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~----------d~~v~i~~~~~~~~~~~~~~~~~~--~--  142 (340)
                      ++|.+.|..+.+.+.+++.-..+-. + ++||++.++.+..          +..|.+||..+.+.    ..+++.  .  
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~----~~~i~~p~~p~  100 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP----IADIELPEGPR  100 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE----EeEEccCCCch
Confidence            8999999999998888876544433 4 9999998877765          78999999987642    222221  1  


Q ss_pred             ---CcceEEEEEcCCCeEEE-Ee-C-CCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-
Q psy15421        143 ---TGYLSCCRFLDDNQIVT-SS-G-DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRD-  215 (340)
Q Consensus       143 ---~~~v~~~~~~~~~~l~~-~~-~-d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~-  215 (340)
                         ...-..+.++++++.+. .. . +..|.+.|+.+++.+..+.-- +...-+. .++..++ .-+.||......+.. 
T Consensus       101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~-t~e~~~~-~~~~Dg~~~~v~~d~~  177 (352)
T TIGR02658       101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFP-TANDTFF-MHCRDGSLAKVGYGTK  177 (352)
T ss_pred             hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEE-ecCCccE-EEeecCceEEEEecCC
Confidence               11122345567765433 33 3 789999999999887766531 1111111 1111122 223455554433322 


Q ss_pred             Cee-ee---EecCCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEeCcCCc-----EEEEeecC----C-cccceEEEEEc
Q psy15421        216 GSC-KQ---TFPGHESDIN-AVTFFP-NGWAFATGSDDATCRLFDIRADQ-----ELAMYSHD----N-IICGITSVAFS  279 (340)
Q Consensus       216 ~~~-~~---~~~~h~~~v~-~v~~~~-~~~~l~s~s~d~~i~iwd~~~~~-----~~~~~~~~----~-~~~~i~~~~~s  279 (340)
                      |+. ..   .+.+-..++. .-.|.+ +|+++..... |.|.+.|+....     ....+...    . ...++.-++++
T Consensus       178 g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~  256 (352)
T TIGR02658       178 GNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH  256 (352)
T ss_pred             CceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc
Confidence            111 11   1111000100 003455 7777766665 999999964332     22222111    0 11234559999


Q ss_pred             CCCcEEEEEeC----------CCcEEEEeCCCceeeeeeccCCcceEEEEECCCCC-EEEEee-CCCcEEecC
Q psy15421        280 RSGRLLLAGYD----------DFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGM-AVATGS-WDSFLRIWN  340 (340)
Q Consensus       280 ~~~~~l~~g~~----------d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~-~l~s~s-~D~~i~iW~  340 (340)
                      |+++.+.+...          .+.|.++|..+.+.+..+.- ...+..+++||||+ +|+... .++.|.+.|
T Consensus       257 ~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD  328 (352)
T TIGR02658       257 RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFD  328 (352)
T ss_pred             CCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence            99998887432          24799999999998887652 35788999999999 777555 467777654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.37  E-value=9.8e-10  Score=99.78  Aligned_cols=187  Identities=15%  Similarity=0.091  Sum_probs=122.3

Q ss_pred             CCCcceEEEEEcCCCe-EEEEeC---CCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEE-EEeCCC--cEEEEEC
Q psy15421        141 GHTGYLSCCRFLDDNQ-IVTSSG---DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV-SGACDA--SAKLWDI  213 (340)
Q Consensus       141 ~~~~~v~~~~~~~~~~-l~~~~~---d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-sg~~dg--~i~~wd~  213 (340)
                      .+...+....|++++. ++.+..   ...|.+||+.+++.. .+..+.+.+.+++|+|+++.++ +.+.++  .|.+||+
T Consensus       187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~  265 (417)
T TIGR02800       187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL  265 (417)
T ss_pred             cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence            3444566667877764 554443   257999999887543 3334555677899999998765 444444  5888898


Q ss_pred             CCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCC-C--cEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeC
Q psy15421        214 RDGSCKQTFPGHESDINAVTFFPNGWAFATGSDD-A--TCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYD  290 (340)
Q Consensus       214 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d-~--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~  290 (340)
                      .++... .+..+........|+|+|+.++..+.. +  .|+++|+.+.+........   .......|+|+|++++.+..
T Consensus       266 ~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~---~~~~~~~~spdg~~i~~~~~  341 (417)
T TIGR02800       266 DGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG---GYNASPSWSPDGDLIAFVHR  341 (417)
T ss_pred             CCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC---CCccCeEECCCCCEEEEEEc
Confidence            876543 333344445567899999988766543 3  5777787765433222121   23557799999999998887


Q ss_pred             CC---cEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCC
Q psy15421        291 DF---NCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDS  334 (340)
Q Consensus       291 d~---~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~  334 (340)
                      ++   .|.+|+..++.. ..+... ......+|+|||++|+..+.++
T Consensus       342 ~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       342 EGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             cCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence            75   788888776543 223222 2234568999999888777654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1.6e-09  Score=98.04  Aligned_cols=239  Identities=13%  Similarity=0.081  Sum_probs=137.0

Q ss_pred             eEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCE---EEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC
Q psy15421         78 KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSF---VACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD  154 (340)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~---l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  154 (340)
                      .|.+.|...++. ..+........+-+|+|||+.   +++...++.-.||-.....+.......+++.   .....|+++
T Consensus       166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~---~~~p~wSPD  241 (428)
T PRK01029        166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGN---QLMPTFSPR  241 (428)
T ss_pred             eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCC---ccceEECCC
Confidence            466666554433 223233444566789999974   3345555544455443333332233333332   334567777


Q ss_pred             C-eEEEEeC-----CCeEEEEECCCC--ceEEEEe-cCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEE--CCC-CeeeeE
Q psy15421        155 N-QIVTSSG-----DMSCALWDIETG--QQCASFI-GHTGDVMSLSLAPDMRTFVSGA-CDASAKLWD--IRD-GSCKQT  221 (340)
Q Consensus       155 ~-~l~~~~~-----d~~v~iwd~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~~~sg~-~dg~i~~wd--~~~-~~~~~~  221 (340)
                      + .|+..+.     +..+..|++..+  .....+. ...+.....+|+||++.++..+ .+|...+|.  +.. +.....
T Consensus       242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~  321 (428)
T PRK01029        242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL  321 (428)
T ss_pred             CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence            6 5554432     223445777653  1222333 2223446789999999777555 567666664  332 222333


Q ss_pred             ecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeC---CCcEE
Q psy15421        222 FPGHESDINAVTFFPNGWAFATGSDD---ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYD---DFNCN  295 (340)
Q Consensus       222 ~~~h~~~v~~v~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~---d~~i~  295 (340)
                      +..+...+....|+|||+.++..+.+   ..|.+||+.+++........   ..+....|+|||+.|+....   ...+.
T Consensus       322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~---~~~~~p~wSpDG~~L~f~~~~~g~~~L~  398 (428)
T PRK01029        322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP---ENKESPSWAIDSLHLVYSAGNSNESELY  398 (428)
T ss_pred             eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC---CCccceEECCCCCEEEEEECCCCCceEE
Confidence            44444566788999999988866543   46899999877654332211   13567899999998875433   35688


Q ss_pred             EEeCCCceeeeeeccCCcceEEEEECCCC
Q psy15421        296 VWDSMKTERAGILAGHDNRVSCLGVTEDG  324 (340)
Q Consensus       296 iw~~~~~~~~~~~~~h~~~i~~~~~s~d~  324 (340)
                      +++...++... +....+.+...+|||-.
T Consensus       399 ~vdl~~g~~~~-Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        399 LISLITKKTRK-IVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             EEECCCCCEEE-eecCCCcccCceecCCC
Confidence            88876665433 33445566778888754

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.35  E-value=2.7e-09  Score=95.57  Aligned_cols=261  Identities=14%  Similarity=0.081  Sum_probs=158.3

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcc
Q psy15421         66 DSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGY  145 (340)
Q Consensus        66 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~  145 (340)
                      ++..++.++.++.+..+|..+++.+........ +.+.... .+..++.+..++.+..+|..+++.....  ........
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~--~~~~~~~~  179 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-VLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTY--SRVTPALT  179 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-eecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEE--ccCCCcee
Confidence            355677788889999999888887765543322 2111001 2456666778888999998766533322  11111000


Q ss_pred             e---EEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCC----C---eEEEEEcC--CCCEEEEEeCCCcEEEEEC
Q psy15421        146 L---SCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTG----D---VMSLSLAP--DMRTFVSGACDASAKLWDI  213 (340)
Q Consensus       146 v---~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----~---v~~~~~~~--~~~~~~sg~~dg~i~~wd~  213 (340)
                      .   ..... .++.++.+..++.+..+|+++|+..........    .   ...+.-+|  .+..++.++.+|.+..||.
T Consensus       180 ~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~  258 (377)
T TIGR03300       180 LRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDL  258 (377)
T ss_pred             ecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEEC
Confidence            0   00011 235677788889999999999876644321100    0   00011111  2457778889999999999


Q ss_pred             CCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCc
Q psy15421        214 RDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN  293 (340)
Q Consensus       214 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~  293 (340)
                      ++++.+-..+. . ......  ..+..+..++.||.+..+|..+++.+......... ...+...  .+..+++++.+|.
T Consensus       259 ~tG~~~W~~~~-~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~-~~ssp~i--~g~~l~~~~~~G~  331 (377)
T TIGR03300       259 RSGRVLWKRDA-S-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR-QLTAPAV--VGGYLVVGDFEGY  331 (377)
T ss_pred             CCCcEEEeecc-C-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCC-ccccCEE--ECCEEEEEeCCCE
Confidence            99876554431 1 111222  23557777888999999999888776654211110 0111122  3568889999999


Q ss_pred             EEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        294 CNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       294 i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      +.++|..+++.+..+.-+...+..--...++ .|+.++.||.|..+
T Consensus       332 l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       332 LHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence            9999999999888777665544332222233 57788899998765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2314|consensus

Probab=99.33  E-value=1.3e-09  Score=95.53  Aligned_cols=268  Identities=13%  Similarity=0.107  Sum_probs=164.3

Q ss_pred             cEEEEEEcCCCCeEEEEeC-----------CCeEEEEeCCCCCeeEEeeCCC--CcE-EEEEECCCCCEEEEEeCCCeEE
Q psy15421         57 KIYAMHWGSDSRNLVSASQ-----------DGKLIVWDSYTTNKVHAIPLRS--SWV-MTCAYAPSGSFVACGGLDNICS  122 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~--~~i-~~v~~~~~~~~l~~~~~d~~v~  122 (340)
                      .|.-+.|||..++|+|=|.           -..++|||+.+|....+++...  ..+ .-..||.|++|+|.-.. +.+.
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis  329 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS  329 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence            5788999999999998763           2679999999999888776532  222 34589999999998766 5578


Q ss_pred             EEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEe------CCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCC
Q psy15421        123 IYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSS------GDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDM  196 (340)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~------~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  196 (340)
                      ||+...-    .....-.-....+....|++.+.+++--      ....+.+..+.+++.+++-.-+.-.-+.|-|-.+|
T Consensus       330 IyEtpsf----~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~g  405 (698)
T KOG2314|consen  330 IYETPSF----MLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSG  405 (698)
T ss_pred             EEecCce----eeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCC
Confidence            8886431    1111111122334555666665544321      12346666666666555433333223345566666


Q ss_pred             CEEEE----------EeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCcC-Cc---
Q psy15421        197 RTFVS----------GACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDD---ATCRLFDIRA-DQ---  259 (340)
Q Consensus       197 ~~~~s----------g~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d---~~i~iwd~~~-~~---  259 (340)
                      .+|+.          ++.--.+-|+.++........-.....|...+|-|.|..|++-+..   .++.+|-+.+ ..   
T Consensus       406 dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~  485 (698)
T KOG2314|consen  406 DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS  485 (698)
T ss_pred             cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence            66642          1222234455555433211111245678889999999988776543   4578887763 11   


Q ss_pred             EEEEeecCCcccceEEEEEcCCCcEEEEE---eCCCcEEEEeCCCceeeee-eccCCcceEEEEECCCCCEEEEeeCCC
Q psy15421        260 ELAMYSHDNIICGITSVAFSRSGRLLLAG---YDDFNCNVWDSMKTERAGI-LAGHDNRVSCLGVTEDGMAVATGSWDS  334 (340)
Q Consensus       260 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g---~~d~~i~iw~~~~~~~~~~-~~~h~~~i~~~~~s~d~~~l~s~s~D~  334 (340)
                      .+..+.  .  ..-+.+.|+|.|++++.+   +..|.+.++|....+...+ ...| -..+.+.|.|.|+|++++|.-.
T Consensus       486 lVk~~d--k--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  486 LVKELD--K--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             hhhhhc--c--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehh
Confidence            122221  1  235789999999998875   4578899999764232221 2233 2346789999999999988643

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.31  E-value=9.6e-08  Score=82.81  Aligned_cols=236  Identities=14%  Similarity=0.097  Sum_probs=145.7

Q ss_pred             EcCCCCeEEEEeC----------CCeEEEEeCCCCCeeEEeeCCCC-------cEEEEEECCCCCEEEEEe-C-CCeEEE
Q psy15421         63 WGSDSRNLVSASQ----------DGKLIVWDSYTTNKVHAIPLRSS-------WVMTCAYAPSGSFVACGG-L-DNICSI  123 (340)
Q Consensus        63 ~s~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~-------~i~~v~~~~~~~~l~~~~-~-d~~v~i  123 (340)
                      ++||++.|..+..          +..|.+||+.+.+.+..++....       .....+++|||++|+... . ++.|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8999998776655          78999999999999888775333       234678999999998776 3 688999


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCC-CceE-EEEe-cCC--CCeEE-EEEcC-CC
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIET-GQQC-ASFI-GHT--GDVMS-LSLAP-DM  196 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~-~~~~-~~~--~~v~~-~~~~~-~~  196 (340)
                      .|+.++.    +..+++- ........ ..+..+..-+.|+......+.. |+.. .... -+.  .++.. -.+.+ ++
T Consensus       133 vD~~~~k----vv~ei~v-p~~~~vy~-t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg  206 (352)
T TIGR02658       133 VDLEGKA----FVRMMDV-PDCYHIFP-TANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG  206 (352)
T ss_pred             EECCCCc----EEEEEeC-CCCcEEEE-ecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCC
Confidence            9997754    2222221 11111111 1222222334455544433322 2211 1100 011  11100 03345 77


Q ss_pred             CEEEEEeCCCcEEEEECCCCe-----eeeEecC-------CCCCeEEEEEecCCCEEEEEe----------CCCcEEEEe
Q psy15421        197 RTFVSGACDASAKLWDIRDGS-----CKQTFPG-------HESDINAVTFFPNGWAFATGS----------DDATCRLFD  254 (340)
Q Consensus       197 ~~~~sg~~dg~i~~wd~~~~~-----~~~~~~~-------h~~~v~~v~~~~~~~~l~s~s----------~d~~i~iwd  254 (340)
                      +.+..... |+|.+.|+....     ....+..       ..+...-++++|+++++....          ..+.|.++|
T Consensus       207 ~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD  285 (352)
T TIGR02658       207 RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD  285 (352)
T ss_pred             cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence            77666555 999999964432     2222211       122233499999988777632          225799999


Q ss_pred             CcCCcEEEEeecCCcccceEEEEEcCCCc-EEEEEe-CCCcEEEEeCCCceeeeee
Q psy15421        255 IRADQELAMYSHDNIICGITSVAFSRSGR-LLLAGY-DDFNCNVWDSMKTERAGIL  308 (340)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~-~d~~i~iw~~~~~~~~~~~  308 (340)
                      ..+.+.+..+....   .+..++++||++ +|.+.. .++.|.++|..+++.++.+
T Consensus       286 ~~t~kvi~~i~vG~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       286 AKTGKRLRKIELGH---EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCCCeEEEEEeCCC---ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            99988877665432   478899999999 777655 5788999999999888776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4190|consensus

Probab=99.30  E-value=4e-11  Score=104.97  Aligned_cols=281  Identities=13%  Similarity=0.172  Sum_probs=185.5

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCC-------CCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeE
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYT-------TNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNIC  121 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v  121 (340)
                      ..+.||+..|..++--.+.+-+++++.|++|++|.+..       ..+..+...|..+|.++.|-.+.++++  +.|+.+
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~gi  806 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGI  806 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccCcc
Confidence            46889999998887666677899999999999998742       335678889999999999999998887  457789


Q ss_pred             EEEEccCCCCceEEEEeecCCC--cceEEEEEcCCCeEEEE-eCCCeEEEEECCCCceEEEEe-----cCCCCeEEEEEc
Q psy15421        122 SIYSLKTREGNVRVSRELPGHT--GYLSCCRFLDDNQIVTS-SGDMSCALWDIETGQQCASFI-----GHTGDVMSLSLA  193 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~-----~~~~~v~~~~~~  193 (340)
                      .+||.-.+.....+. ..+.|.  +.+.++.-.+...++++ +...+|+++|.+.++-...+.     +..+.+.+++..
T Consensus       807 HlWDPFigr~Laq~~-dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQME-DAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             eeecccccchhHhhh-cCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            999964432111111 112222  23333322123344444 668999999999887655443     344568899999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE-EeCcCCcEEEEeecCCcccc
Q psy15421        194 PDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRL-FDIRADQELAMYSHDNIICG  272 (340)
Q Consensus       194 ~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~i-wd~~~~~~~~~~~~~~~~~~  272 (340)
                      |.|+.++.+-..|.|.+.|.++|+.+.++..-+-....++ .|....++....|.++.+ |-...+....+......  +
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppe--p  962 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPE--P  962 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCc--c
Confidence            9999999999999999999999998888875554444443 255567777778888888 75444332222111110  0


Q ss_pred             eEEEEE-cCCCcEEEEEeCCCcEEEEeCCC----ceeeeeecc--CCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        273 ITSVAF-SRSGRLLLAGYDDFNCNVWDSMK----TERAGILAG--HDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       273 i~~~~~-s~~~~~l~~g~~d~~i~iw~~~~----~~~~~~~~~--h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                         ..| -.-|.-|+++.....+.+|-...    ...+..++.  -.+..++++.-|=...++.|...|.|++
T Consensus       963 ---ahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  963 ---AHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             ---hhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence               011 12356677776666677774211    011122222  2456778888887777778888888876

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.30  E-value=7.6e-08  Score=80.74  Aligned_cols=249  Identities=15%  Similarity=0.191  Sum_probs=160.0

Q ss_pred             ecCccCcEEEEEEcCCCCeEEEEeCC---CeEEEEeCCC--CCeeEE--eeCCCCcEEEEEECCCCCEEEEEeCC-CeEE
Q psy15421         51 LRGHLAKIYAMHWGSDSRNLVSASQD---GKLIVWDSYT--TNKVHA--IPLRSSWVMTCAYAPSGSFVACGGLD-NICS  122 (340)
Q Consensus        51 ~~~h~~~v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~--~~~~~~--~~~~~~~i~~v~~~~~~~~l~~~~~d-~~v~  122 (340)
                      +..+.+..+-|+|+|+++.|.++-.+   |.|-.+.+..  ++....  ......+..-+++++++++++++... +.|.
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            34567788999999999998888654   6677665543  443221  11222333678899999999998754 7899


Q ss_pred             EEEccCCCCceEEEEeecCCCcc----------eEEEEEcCCCeEEEEeC--CCeEEEEECCCCceEEE---EecCCCCe
Q psy15421        123 IYSLKTREGNVRVSRELPGHTGY----------LSCCRFLDDNQIVTSSG--DMSCALWDIETGQQCAS---FIGHTGDV  187 (340)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~l~~~~~--d~~v~iwd~~~~~~~~~---~~~~~~~v  187 (340)
                      ++.++.. +.+........|.+.          +....+.++++++.+..  .-.|.+|++..|+....   ........
T Consensus       115 v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP  193 (346)
T COG2706         115 VYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP  193 (346)
T ss_pred             EEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCc
Confidence            9998764 332222222234333          56666777775554443  45689999987754322   12334567


Q ss_pred             EEEEEcCCCCEEEEEe-CCCcEEEEECCCC-eeeeEecCC---------CCCeEEEEEecCCCEEEEEeC-CCcEEEEeC
Q psy15421        188 MSLSLAPDMRTFVSGA-CDASAKLWDIRDG-SCKQTFPGH---------ESDINAVTFFPNGWAFATGSD-DATCRLFDI  255 (340)
Q Consensus       188 ~~~~~~~~~~~~~sg~-~dg~i~~wd~~~~-~~~~~~~~h---------~~~v~~v~~~~~~~~l~s~s~-d~~i~iwd~  255 (340)
                      ..+.|+|++++.+.-. -+++|-+|..... ..+..++.+         .....+|.++|||++|.++.. ...|-+|.+
T Consensus       194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V  273 (346)
T COG2706         194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV  273 (346)
T ss_pred             ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence            8999999999887655 5999999998763 112222211         234567889999998877643 235777766


Q ss_pred             cCC-cEEEEeec-CCcccceEEEEEcCCCcEEEEEeCC-CcEEEEeCC
Q psy15421        256 RAD-QELAMYSH-DNIICGITSVAFSRSGRLLLAGYDD-FNCNVWDSM  300 (340)
Q Consensus       256 ~~~-~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~g~~d-~~i~iw~~~  300 (340)
                      ... ..+..... .........+.|+|++++|+++..+ .+|.+|...
T Consensus       274 ~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         274 DPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             cCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            532 33433322 2222236788999999999988764 468888753

>KOG3914|consensus

Probab=99.30  E-value=7.8e-11  Score=99.26  Aligned_cols=162  Identities=17%  Similarity=0.289  Sum_probs=113.8

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEE--EEeecCCCcceEEEEEcCCCeEEE-EeCCCeEEEEECCCCceE
Q psy15421        101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV--SRELPGHTGYLSCCRFLDDNQIVT-SSGDMSCALWDIETGQQC  177 (340)
Q Consensus       101 ~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~~-~~~d~~v~iwd~~~~~~~  177 (340)
                      ..+.+++.++++|++..++.+.++++.......+.  ...++.....+..+.......++- .+....+.+|.... ...
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~~~  144 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-GRC  144 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc-cCc
Confidence            34567888999999988888777777654322222  222223333344333322222222 33456677777665 344


Q ss_pred             EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEe-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCc
Q psy15421        178 ASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTF-PGHESDINAVTFFPNGWAFATGSDDATCRLFDIR  256 (340)
Q Consensus       178 ~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  256 (340)
                      ..+.+|-+-+..++++||+++++++..|..|++-....-..+..| -||..-|..++.-++. .|+|||.|+++++||++
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDIT  223 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecc
Confidence            566789999999999999999999999999999877654444444 3799999999988754 58999999999999999


Q ss_pred             CCcEEEEe
Q psy15421        257 ADQELAMY  264 (340)
Q Consensus       257 ~~~~~~~~  264 (340)
                      +++.+..+
T Consensus       224 sgk~L~t~  231 (390)
T KOG3914|consen  224 SGKLLDTC  231 (390)
T ss_pred             cCCccccc
Confidence            98877654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=4.1e-09  Score=96.04  Aligned_cols=200  Identities=18%  Similarity=0.146  Sum_probs=123.3

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCC---CeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEE-EeCCC--eEE
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQD---GKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVAC-GGLDN--ICS  122 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~-~~~d~--~v~  122 (340)
                      +.+..|...+....|+|||+.|+..+.+   ..|.+||+.+++... +......+....|+|||+.++. ...++  .+.
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy  270 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY  270 (430)
T ss_pred             eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence            4566677889999999999998876643   468899998776533 2222233456789999998874 44454  466


Q ss_pred             EEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeC-C--CeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCE
Q psy15421        123 IYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSG-D--MSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRT  198 (340)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d--~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  198 (340)
                      ++++.++.  ..   .+..+........|++++ .++..+. +  ..|.++++.+++.. .+...........|+|+++.
T Consensus       271 ~~d~~~~~--~~---~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~~~~~~Spdg~~  344 (430)
T PRK00178        271 VMDLASRQ--LS---RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYNARPRLSADGKT  344 (430)
T ss_pred             EEECCCCC--eE---EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccceEECCCCCE
Confidence            66766542  21   222333333445677665 4544443 3  35777788777643 22222223445789999998


Q ss_pred             EEEEeC-CC--cEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCcC
Q psy15421        199 FVSGAC-DA--SAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDD---ATCRLFDIRA  257 (340)
Q Consensus       199 ~~sg~~-dg--~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d---~~i~iwd~~~  257 (340)
                      ++..+. ++  .|.+||+.++........  .......|+|+|+.++-.+.+   ..+.+++...
T Consensus       345 i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        345 LVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             EEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            876554 33  578889988764332222  122245899999988766543   3466666653

>KOG1064|consensus

Probab=99.28  E-value=5.5e-11  Score=116.44  Aligned_cols=245  Identities=14%  Similarity=0.193  Sum_probs=166.4

Q ss_pred             EEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEE
Q psy15421         70 LVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCC  149 (340)
Q Consensus        70 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~  149 (340)
                      +.....++...-|....+..  .++.+-..|..+.=+|...+.++|+.|+.+++|....+.... ..++ .+. ..|+.+
T Consensus      2183 ~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~-~~rt-~g~-s~vtr~ 2257 (2439)
T KOG1064|consen 2183 FTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVV-CFRT-AGN-SRVTRS 2257 (2439)
T ss_pred             CCcccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEE-Eeec-cCc-chhhhh
Confidence            33334444444454332221  223333446666667888999999999999999987654332 2232 233 677777


Q ss_pred             EEcC-CCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEECCCCe-eeeEecC
Q psy15421        150 RFLD-DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGA---CDASAKLWDIRDGS-CKQTFPG  224 (340)
Q Consensus       150 ~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~---~dg~i~~wd~~~~~-~~~~~~~  224 (340)
                      .|.. ++.+..+..||.+.+|... .++......|........|--  ..+++.+   .++.+.+||.--.. .-.....
T Consensus      2258 ~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~ 2334 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTC 2334 (2439)
T ss_pred             hhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeee
Confidence            7764 5678889999999999997 566666777887777777754  4555543   47999999964322 1112267


Q ss_pred             CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCcee
Q psy15421        225 HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTER  304 (340)
Q Consensus       225 h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~  304 (340)
                      |.+.++++++-|....|+|||.+|.|++||++..+..+.+..           ++ ...++++|+..|.++||.......
T Consensus      2335 H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred             cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccch
Confidence            999999999999999999999999999999998766544321           33 567999999999999999876655


Q ss_pred             eeeec---cCCcc---e-EEEEECCCCCEEEEeeCCCc
Q psy15421        305 AGILA---GHDNR---V-SCLGVTEDGMAVATGSWDSF  335 (340)
Q Consensus       305 ~~~~~---~h~~~---i-~~~~~s~d~~~l~s~s~D~~  335 (340)
                      +..+.   .|.+.   + +.+ +-...+.|.+|+.||+
T Consensus      2403 l~~~p~e~ak~gfFr~~g~Q~-~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2403 LHTFPSEHAKQGFFRNIGMQI-NVGQCNRIFSCGADGT 2439 (2439)
T ss_pred             hhcCchhhcccchhhhcCcee-eeccCceEEEecCCCC
Confidence            55432   12221   1 112 2234457888888874

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.26  E-value=1.7e-08  Score=100.47  Aligned_cols=232  Identities=11%  Similarity=0.185  Sum_probs=149.9

Q ss_pred             EEEECCC-CCEEEEEeCCCeEEEEEccCCCCceEEEEeecC--CC------------cceEEEEEcCC-CeEE-EEeCCC
Q psy15421        102 TCAYAPS-GSFVACGGLDNICSIYSLKTREGNVRVSRELPG--HT------------GYLSCCRFLDD-NQIV-TSSGDM  164 (340)
Q Consensus       102 ~v~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~--~~------------~~v~~~~~~~~-~~l~-~~~~d~  164 (340)
                      .+++++. +.++++-..++.|++++....   .  ...+.+  ..            ..-..+.+.++ +.+. +-....
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~--i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~  646 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGN---F--IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH  646 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCC---E--EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence            5677764 556666667788999986421   1  111111  10            11234455443 4444 444567


Q ss_pred             eEEEEECCCCceEEEEecC-----------------CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeeeEecCC-
Q psy15421        165 SCALWDIETGQQCASFIGH-----------------TGDVMSLSLAP-DMRTFVSGACDASAKLWDIRDGSCKQTFPGH-  225 (340)
Q Consensus       165 ~v~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h-  225 (340)
                      .|+.+|+.++. +..+.+-                 -.....++++| ++..+++.+.++.|++||..++... .+.+. 
T Consensus       647 ~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G  724 (1057)
T PLN02919        647 ALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDG  724 (1057)
T ss_pred             eEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCC
Confidence            89999987654 3333210                 12346799999 5667778888999999998876532 22111 


Q ss_pred             --------------CCCeEEEEEecCCC-EEEEEeCCCcEEEEeCcCCcEEEEee-------------c------CCccc
Q psy15421        226 --------------ESDINAVTFFPNGW-AFATGSDDATCRLFDIRADQELAMYS-------------H------DNIIC  271 (340)
Q Consensus       226 --------------~~~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~-------------~------~~~~~  271 (340)
                                    ......++++|++. .+++-+.++.|++||+.++.......             .      .....
T Consensus       725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~  804 (1057)
T PLN02919        725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ  804 (1057)
T ss_pred             ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence                          12346799999987 56666778999999987654321110             0      00112


Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeee-------------ccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        272 GITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGIL-------------AGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       272 ~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~-------------~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      ....++++++|.++++-..++.|++||..++......             .++......++++++|+.+++-+.+++|++
T Consensus       805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv  884 (1057)
T PLN02919        805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY  884 (1057)
T ss_pred             CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence            3568899999999999999999999998766543221             112235678999999999999999999999


Q ss_pred             cC
Q psy15421        339 WN  340 (340)
Q Consensus       339 W~  340 (340)
                      ||
T Consensus       885 id  886 (1057)
T PLN02919        885 LD  886 (1057)
T ss_pred             EE
Confidence            96

>KOG2315|consensus

Probab=99.25  E-value=4.3e-09  Score=92.50  Aligned_cols=235  Identities=18%  Similarity=0.265  Sum_probs=151.8

Q ss_pred             EEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCC--CEEEE-----EeCCCeEEEEEccCCCC
Q psy15421         59 YAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSG--SFVAC-----GGLDNICSIYSLKTREG  131 (340)
Q Consensus        59 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~--~~l~~-----~~~d~~v~i~~~~~~~~  131 (340)
                      ++..|+.|..+.+ --..+.+++|+..+.+ ....+.|...|....++|.+  ..+|+     .|.-..|+||.......
T Consensus       129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~-~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~  206 (566)
T KOG2315|consen  129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFK-TIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ  206 (566)
T ss_pred             cccccccchhhhh-hhhcceEEEEecCCcc-ceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence            7888888776533 2334579999987633 33445667778888888863  23333     35567799998763221


Q ss_pred             ceEE-EEeecCCCcceEEEEEcCCC--eEEEEeC--C---------CeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC
Q psy15421        132 NVRV-SRELPGHTGYLSCCRFLDDN--QIVTSSG--D---------MSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR  197 (340)
Q Consensus       132 ~~~~-~~~~~~~~~~v~~~~~~~~~--~l~~~~~--d---------~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  197 (340)
                      .... .+++. ....|. +.|...+  .|+.++.  |         .++.+.+++ +.....-..-.++|.++.|+|+++
T Consensus       207 ~~~~a~ksFF-kadkvq-m~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~  283 (566)
T KOG2315|consen  207 HQPVANKSFF-KADKVQ-MKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGR  283 (566)
T ss_pred             cchhhhcccc-ccceeE-EEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCC
Confidence            1100 01110 111222 3444332  3333322  3         357777777 333333333578999999999998


Q ss_pred             EEEE--EeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCcCCcEEEEeecCCcccc
Q psy15421        198 TFVS--GACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDD---ATCRLFDIRADQELAMYSHDNIICG  272 (340)
Q Consensus       198 ~~~s--g~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~  272 (340)
                      .|+.  |-.--++.++|++ +..+..+.  +++=+++-|+|.|++++.+|-+   |.+.|||+.+.+.+..+....    
T Consensus       284 EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~----  356 (566)
T KOG2315|consen  284 EFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN----  356 (566)
T ss_pred             EEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC----
Confidence            7765  4457889999986 55566654  5677899999999999888764   789999999877766553322    


Q ss_pred             eEEEEEcCCCcEEEEEeC------CCcEEEEeCCCceeee
Q psy15421        273 ITSVAFSRSGRLLLAGYD------DFNCNVWDSMKTERAG  306 (340)
Q Consensus       273 i~~~~~s~~~~~l~~g~~------d~~i~iw~~~~~~~~~  306 (340)
                      -+-+.|+|||.++++++.      |..++||+ -++..+.
T Consensus       357 tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh-ytG~~l~  395 (566)
T KOG2315|consen  357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH-YTGSLLH  395 (566)
T ss_pred             ceEEEEcCCCcEEEEEeccccEEecCCeEEEE-ecCceee
Confidence            456899999999999875      46789998 4555443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.25  E-value=4.2e-08  Score=97.74  Aligned_cols=241  Identities=16%  Similarity=0.189  Sum_probs=154.9

Q ss_pred             EEEEcCC-CCeEEEEeCCCeEEEEeCCCCCeeEEeeC--CC------------CcEEEEEECCCCCEEEEEeC-CCeEEE
Q psy15421         60 AMHWGSD-SRNLVSASQDGKLIVWDSYTTNKVHAIPL--RS------------SWVMTCAYAPSGSFVACGGL-DNICSI  123 (340)
Q Consensus        60 ~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~------------~~i~~v~~~~~~~~l~~~~~-d~~v~i  123 (340)
                      .++++++ +..+++-...+.|++||.. ++.+..+..  ..            .....+++.++++.|+.+.. .+.|++
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~  650 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE  650 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence            5778764 6678888888999999975 444333322  10            12467889988887666554 467888


Q ss_pred             EEccCCCCceEEEEe-------ecCC-------CcceEEEEEcC-CC-eEEEEeCCCeEEEEECCCCceEEEEec-----
Q psy15421        124 YSLKTREGNVRVSRE-------LPGH-------TGYLSCCRFLD-DN-QIVTSSGDMSCALWDIETGQQCASFIG-----  182 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~-------~~~~-------~~~v~~~~~~~-~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~-----  182 (340)
                      ++..++.  ......       ..+.       -..-..+.+.+ ++ .+++...++.|.+||..++... .+.+     
T Consensus       651 id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~  727 (1057)
T PLN02919        651 IDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER  727 (1057)
T ss_pred             EecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence            8875432  111100       0000       00112355655 44 4566677899999999776432 2211     


Q ss_pred             ----------CCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeeeEe-------------cCC--------CCCeE
Q psy15421        183 ----------HTGDVMSLSLAPDMR-TFVSGACDASAKLWDIRDGSCKQTF-------------PGH--------ESDIN  230 (340)
Q Consensus       183 ----------~~~~v~~~~~~~~~~-~~~sg~~dg~i~~wd~~~~~~~~~~-------------~~h--------~~~v~  230 (340)
                                .-.....++++|+++ ++++-+.++.|++||+.++......             -.+        .....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                      112356799999988 5556677899999999876422110             000        11245


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecC-----------CcccceEEEEEcCCCcEEEEEeCCCcEEEEeC
Q psy15421        231 AVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHD-----------NIICGITSVAFSRSGRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       231 ~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-----------~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~  299 (340)
                      +++++++|..+++-+.++.|++||..++.........           ........++++++|+++++-+.++.|++|+.
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            8999999999999999999999998766544322211           11124678999999999999999999999998


Q ss_pred             CCcee
Q psy15421        300 MKTER  304 (340)
Q Consensus       300 ~~~~~  304 (340)
                      .+++.
T Consensus       888 ~~~~~  892 (1057)
T PLN02919        888 NKGEA  892 (1057)
T ss_pred             CCCcc
Confidence            77653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.25  E-value=3.9e-08  Score=88.08  Aligned_cols=258  Identities=14%  Similarity=0.103  Sum_probs=158.9

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcc
Q psy15421         66 DSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGY  145 (340)
Q Consensus        66 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~  145 (340)
                      .+..++.++.++.|..+|..+++.+..............  .++..++.++.++.+..+|..+++..  +...+.+   .
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~--W~~~~~~---~  136 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKEL--WRAKLSS---E  136 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEe--eeeccCc---e
Confidence            356788889999999999999998876655443211222  24677788888999988988765432  2222221   1


Q ss_pred             eEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCe-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeee
Q psy15421        146 LSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDV-----MSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQ  220 (340)
Q Consensus       146 v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~  220 (340)
                      +.+.....++.++.++.++.+..+|.++|+.+..+.......     .+....  +..++.+..+|.+..+|.++|+.+-
T Consensus       137 ~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W  214 (377)
T TIGR03300       137 VLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW  214 (377)
T ss_pred             eecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence            111111135677778889999999999998776654322211     111111  2467788889999999999987653


Q ss_pred             EecCC-C-C-----CeEEEEEec--CCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCC
Q psy15421        221 TFPGH-E-S-----DINAVTFFP--NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD  291 (340)
Q Consensus       221 ~~~~h-~-~-----~v~~v~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d  291 (340)
                      ..... . +     ....+.-+|  .+..+..++.+|.++.||..+++.+.......    .....  .++..+.+++.|
T Consensus       215 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----~~~p~--~~~~~vyv~~~~  288 (377)
T TIGR03300       215 EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS----YQGPA--VDDNRLYVTDAD  288 (377)
T ss_pred             eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC----ccCce--EeCCEEEEECCC
Confidence            32210 0 0     000010011  24467778889999999999887776553221    11112  245677778899


Q ss_pred             CcEEEEeCCCceeeeeeccCCc-ceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        292 FNCNVWDSMKTERAGILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       292 ~~i~iw~~~~~~~~~~~~~h~~-~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |.+..+|..+++.+-....-.. ...+...  .+..|+.++.||.|+++|
T Consensus       289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d  336 (377)
T TIGR03300       289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS  336 (377)
T ss_pred             CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence            9999999888876543321111 1122112  355788888999988875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=7.8e-09  Score=94.22  Aligned_cols=220  Identities=15%  Similarity=0.154  Sum_probs=124.8

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCC-C--eEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEE-EeCCCe--EE
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQD-G--KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVAC-GGLDNI--CS  122 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~-~~~d~~--v~  122 (340)
                      +.+..+...+.+..|+|||+.|+-.+.+ +  .|.+||+.+++..... .........+|+|||+.|+. .+.++.  +.
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy  289 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT-SFPGINGAPRFSPDGKKLALVLSKDGQPEIY  289 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec-CCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence            3445556678899999999988866543 2  5888898877643221 11223346789999998765 456665  44


Q ss_pred             EEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeC-C--CeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCE
Q psy15421        123 IYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSG-D--MSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRT  198 (340)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d--~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  198 (340)
                      ++++.++  ..   ..+..+........|++++ .++..+. +  ..|.++|+.+++.. .+..........+|+||++.
T Consensus       290 ~~dl~tg--~~---~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~  363 (448)
T PRK04792        290 VVDIATK--AL---TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRS  363 (448)
T ss_pred             EEECCCC--Ce---EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCE
Confidence            5555433  22   2222333334455677665 4444332 3  35667788776643 22222223345789999998


Q ss_pred             EEEEeC-CCc--EEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCC-Cc--EEEEeCcCCcEEEEeecCCcccc
Q psy15421        199 FVSGAC-DAS--AKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDD-AT--CRLFDIRADQELAMYSHDNIICG  272 (340)
Q Consensus       199 ~~sg~~-dg~--i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d-~~--i~iwd~~~~~~~~~~~~~~~~~~  272 (340)
                      ++..+. ++.  |.++|+.++.... +.... ......|+|+|+.++..+.+ +.  +++++.... ....+...  ...
T Consensus       364 l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~-~~~~l~~~--~g~  438 (448)
T PRK04792        364 MIMVNRTNGKFNIARQDLETGAMQV-LTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR-FKARLPAG--QGE  438 (448)
T ss_pred             EEEEEecCCceEEEEEECCCCCeEE-ccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCC--CCC
Confidence            876544 443  4556877775432 22211 12234799999987665543 33  666676433 22222211  112


Q ss_pred             eEEEEEcC
Q psy15421        273 ITSVAFSR  280 (340)
Q Consensus       273 i~~~~~s~  280 (340)
                      +...+|+|
T Consensus       439 ~~~p~Wsp  446 (448)
T PRK04792        439 VKSPAWSP  446 (448)
T ss_pred             cCCCccCC
Confidence            45567776

>KOG0309|consensus

Probab=99.23  E-value=3.3e-10  Score=102.43  Aligned_cols=298  Identities=17%  Similarity=0.212  Sum_probs=190.2

Q ss_pred             ccccceeeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC-eeEEe-eCCCCcEEEEEECCCC--CEEE
Q psy15421         38 EPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN-KVHAI-PLRSSWVMTCAYAPSG--SFVA  113 (340)
Q Consensus        38 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~-~~~~~~i~~v~~~~~~--~~l~  113 (340)
                      .|+....+..+..|+. .+.+.++..+|-|+-++.++.-| +.+-|+...- ...-+ ......|..+.|+|..  .+-+
T Consensus         8 gpyns~tf~kslsl~v-~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wi   85 (1081)
T KOG0309|consen    8 GPYNSPTFGKSLSLKV-DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWI   85 (1081)
T ss_pred             CCCCCCccCceeEEEe-cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeE
Confidence            3444444444444443 34677888999999888888776 4555654332 21111 1112345666777643  3444


Q ss_pred             EEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC--eEEEEeCCCeEEEEECCCCc-eEEEEecCCCCeEEE
Q psy15421        114 CGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN--QIVTSSGDMSCALWDIETGQ-QCASFIGHTGDVMSL  190 (340)
Q Consensus       114 ~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~  190 (340)
                      +......-.+|++..... ..+...+.+|+..+..+.|.+..  .+++++-|..+..||+++.. ++..+..-......+
T Consensus        86 Vsts~qkaiiwnlA~ss~-~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqV  164 (1081)
T KOG0309|consen   86 VSTSNQKAIIWNLAKSSS-NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQV  164 (1081)
T ss_pred             EecCcchhhhhhhhcCCc-cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCcee
Confidence            444444456898865432 34555678999999999997654  68889999999999998754 344444444456788


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCe-eeeEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCCcEEEEeecCC
Q psy15421        191 SLAPDMRTFVSGACDASAKLWDIRDGS-CKQTFPGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQELAMYSHDN  268 (340)
Q Consensus       191 ~~~~~~~~~~sg~~dg~i~~wd~~~~~-~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  268 (340)
                      +|+.-...+++.+..+.|.+||.+.|. +...+++|-..|+.++|..- ...+.+++.|+++++||............ .
T Consensus       165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-t  243 (1081)
T KOG0309|consen  165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-T  243 (1081)
T ss_pred             eecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-c
Confidence            888755556667788899999998764 57788999999999998753 34688999999999999875332221111 1


Q ss_pred             cccceEEEEEcCCCcEEEEEe--CCCcEEE---------EeCCCc-eeeeeeccCCcceEEEEECC--------CC--CE
Q psy15421        269 IICGITSVAFSRSGRLLLAGY--DDFNCNV---------WDSMKT-ERAGILAGHDNRVSCLGVTE--------DG--MA  326 (340)
Q Consensus       269 ~~~~i~~~~~s~~~~~l~~g~--~d~~i~i---------w~~~~~-~~~~~~~~h~~~i~~~~~s~--------d~--~~  326 (340)
                      ...+|..-.|-|-|+-..+--  .+..+-+         |+..++ .++..+.||.+.|...-|-.        |.  -.
T Consensus       244 t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQ  323 (1081)
T KOG0309|consen  244 TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQ  323 (1081)
T ss_pred             ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCcccee
Confidence            122455566666544222211  1112222         333332 45778999998876544422        21  25


Q ss_pred             EEEeeCCCcEEec
Q psy15421        327 VATGSWDSFLRIW  339 (340)
Q Consensus       327 l~s~s~D~~i~iW  339 (340)
                      |++=|.|..+|+|
T Consensus       324 LVTWSkD~~lrlW  336 (1081)
T KOG0309|consen  324 LVTWSKDQTLRLW  336 (1081)
T ss_pred             EEEeecCCceEee
Confidence            9999999999999

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=2e-08  Score=90.88  Aligned_cols=226  Identities=13%  Similarity=0.109  Sum_probs=131.0

Q ss_pred             EEecCccCcEEEEEEcCCCCe--E-EEEeCCC--eEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeC-----C
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRN--L-VSASQDG--KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGL-----D  118 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~--l-~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~-----d  118 (340)
                      +.|..+...+..-.|+|||+.  + .+...+|  .|.+.++.+++...... ........+|+|||+.|+..+.     +
T Consensus       178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG~~Laf~s~~~g~~d  256 (428)
T PRK01029        178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRKKLLAFISDRYGNPD  256 (428)
T ss_pred             eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCCCEEEEEECCCCCcc
Confidence            345445556778899999975  3 2333343  46667887765433222 2333456789999998876543     2


Q ss_pred             CeEEEEEccCCC-CceEEEEeecCCCcceEEEEEcCCCe-EEEEe-CCCeEEEE--ECCC-CceEEEEecCCCCeEEEEE
Q psy15421        119 NICSIYSLKTRE-GNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSS-GDMSCALW--DIET-GQQCASFIGHTGDVMSLSL  192 (340)
Q Consensus       119 ~~v~i~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~-~d~~v~iw--d~~~-~~~~~~~~~~~~~v~~~~~  192 (340)
                      ..+..|++..+. +....  ....+........|++++. |+..+ .++...+|  ++.. +.....+..+...+....|
T Consensus       257 i~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~w  334 (428)
T PRK01029        257 LFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAW  334 (428)
T ss_pred             eeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeE
Confidence            233446655421 11111  1112222223456777764 55544 35655555  4432 2233444445556778899


Q ss_pred             cCCCCEEEEEeCC---CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeC---CCcEEEEeCcCCcEEEEeec
Q psy15421        193 APDMRTFVSGACD---ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSD---DATCRLFDIRADQELAMYSH  266 (340)
Q Consensus       193 ~~~~~~~~sg~~d---g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~  266 (340)
                      +||++.++..+.+   ..|.+||+.+++...... ....+....|+|||+.++..+.   ...|+++|+..++.......
T Consensus       335 SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~  413 (428)
T PRK01029        335 SPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG  413 (428)
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC
Confidence            9999988765543   468999998887544332 2345677899999988764432   35688888876654433322


Q ss_pred             CCcccceEEEEEcCC
Q psy15421        267 DNIICGITSVAFSRS  281 (340)
Q Consensus       267 ~~~~~~i~~~~~s~~  281 (340)
                      ..   .+...+|+|-
T Consensus       414 ~g---~~~~p~Ws~~  425 (428)
T PRK01029        414 SG---EKRFPSWGAF  425 (428)
T ss_pred             CC---cccCceecCC
Confidence            21   2445677764

>KOG2314|consensus

Probab=99.21  E-value=9.5e-09  Score=90.30  Aligned_cols=272  Identities=10%  Similarity=0.100  Sum_probs=158.9

Q ss_pred             EEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeC-----------CCeEEEEEcc
Q psy15421         59 YAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGL-----------DNICSIYSLK  127 (340)
Q Consensus        59 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~-----------d~~v~i~~~~  127 (340)
                      +-+.|||-|.+|+|--.-| |.+|--.+-..++.+. | ..|.-+.|||+.+||++-+.           ...+.|||+.
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            5788999999999877765 8899766555555443 3 33778899999999999753           2578999999


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeC---
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC---  204 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~---  204 (340)
                      ++....... .+......-....|+.++++++.-...+|.||+..+-..+..-.-.-..|....|+|.+++|+--..   
T Consensus       291 tG~lkrsF~-~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~  369 (698)
T KOG2314|consen  291 TGLLKRSFP-VIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN  369 (698)
T ss_pred             ccchhccee-ccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence            875332111 1111222233467777777777777788999987653322111112245777889998777652111   


Q ss_pred             --CCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEE----------eCCCcEEEEeCcCCcE-EEEeecCCccc
Q psy15421        205 --DASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATG----------SDDATCRLFDIRADQE-LAMYSHDNIIC  271 (340)
Q Consensus       205 --dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~----------s~d~~i~iwd~~~~~~-~~~~~~~~~~~  271 (340)
                        --.+.+-.+.+++.+++-.-|.-.=..+-|-.+|.+|+.-          +.=-.+.|+-++.... +...   ....
T Consensus       370 ~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v---elke  446 (698)
T KOG2314|consen  370 NIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV---ELKE  446 (698)
T ss_pred             CCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee---ecch
Confidence              1223333333333333222121111235555666665432          2222345555554322 1111   1223


Q ss_pred             ceEEEEEcCCCcEEEEEeC---CCcEEEEeCCC----ceeeeeeccCCcceEEEEECCCCCEEEEee---CCCcEEec
Q psy15421        272 GITSVAFSRSGRLLLAGYD---DFNCNVWDSMK----TERAGILAGHDNRVSCLGVTEDGMAVATGS---WDSFLRIW  339 (340)
Q Consensus       272 ~i~~~~~s~~~~~l~~g~~---d~~i~iw~~~~----~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s---~D~~i~iW  339 (340)
                      .|...+|-|.|..+++-+.   ..++.+|..++    .+.+..+..  ...+.+-|+|.|++++.+.   ..|.+...
T Consensus       447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~  522 (698)
T KOG2314|consen  447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFY  522 (698)
T ss_pred             heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEE
Confidence            5889999999988776443   35788887662    222333332  4567899999999988654   34544433

>KOG4532|consensus

Probab=99.20  E-value=1.6e-08  Score=81.35  Aligned_cols=249  Identities=15%  Similarity=0.107  Sum_probs=159.9

Q ss_pred             eCCCeEEEEeCCCCCe-eEEeeCCCCcEEEEEECC-----CCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceE
Q psy15421         74 SQDGKLIVWDSYTTNK-VHAIPLRSSWVMTCAYAP-----SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLS  147 (340)
Q Consensus        74 ~~d~~i~iwd~~~~~~-~~~~~~~~~~i~~v~~~~-----~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~  147 (340)
                      +..-.+-+|+.++..+ +..+.      ..+.|-|     .-.+||.||..|...+|...+.++....   +..|...|.
T Consensus        49 ~~t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~---cd~snn~v~  119 (344)
T KOG4532|consen   49 SKTISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQ---CDVSNNDVT  119 (344)
T ss_pred             cceeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceee---ecccccchh
Confidence            3444567787765541 12221      1233444     3458899999999999998876654432   233333222


Q ss_pred             EEE-EcC-CCeEEEEeCCCeEEEEECCCCceEEEEecCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eee-
Q psy15421        148 CCR-FLD-DNQIVTSSGDMSCALWDIETGQQCASFIGHTG--DVMSLSLAPDMRTFVSGACDASAKLWDIRDGS--CKQ-  220 (340)
Q Consensus       148 ~~~-~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~--~~~-  220 (340)
                      -.. +.+ ...+..++.|.++++.+++.+..-.  ..|..  .+.++.++++++.+++.+....|-+|.+....  .+. 
T Consensus       120 ~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~--~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~  197 (344)
T KOG4532|consen  120 LVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF--AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI  197 (344)
T ss_pred             hhhhhcccccceeeccCCcceeEEEEecCcccc--eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee
Confidence            111 111 2357778899999999887553222  22333  37899999999999999999999999886432  222 


Q ss_pred             EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEe---ecCCcccceEEEEEcCCCc--EEEEEeCCCcEE
Q psy15421        221 TFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMY---SHDNIICGITSVAFSRSGR--LLLAGYDDFNCN  295 (340)
Q Consensus       221 ~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~~~~~~~i~~~~~s~~~~--~l~~g~~d~~i~  295 (340)
                      .....+..--+..|+.....||++.+||++.|||++........   ..+.+..++..+.|+|.|.  +|+..-.=+.+.
T Consensus       198 ~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~h  277 (344)
T KOG4532|consen  198 YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVH  277 (344)
T ss_pred             EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEE
Confidence            22233344567889999999999999999999999875543221   2234556799999998664  444444456688


Q ss_pred             EEeCCCceeeee-------eccCC-cceEEEEECCCCCEEEEeeCC
Q psy15421        296 VWDSMKTERAGI-------LAGHD-NRVSCLGVTEDGMAVATGSWD  333 (340)
Q Consensus       296 iw~~~~~~~~~~-------~~~h~-~~i~~~~~s~d~~~l~s~s~D  333 (340)
                      +-|.+++.....       +..|. ..|....|+.++.-+...+.+
T Consensus       278 v~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  278 VVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             EEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence            888887654332       23343 348888888887666555544

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.20  E-value=1.1e-08  Score=89.08  Aligned_cols=273  Identities=11%  Similarity=0.072  Sum_probs=167.4

Q ss_pred             ccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCC--------------
Q psy15421         54 HLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDN--------------  119 (340)
Q Consensus        54 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~--------------  119 (340)
                      ..-++..++|||.|.+|++...- -|.+|.......+..++.  ..|..+.|+|.++||.+-....              
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~--~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRH--PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cCcchhheeecCcchheehhhcc-ceEEccccchhheeeeec--CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            55678999999999999976665 589998776665555443  4578889999999999976544              


Q ss_pred             -eEEEEEccCCCCceEEEEeecCCCcc--eE-EEEEcCCCeEEEEeCCCeEEEEECCCCce-EEEEecC-CCCeEEEEEc
Q psy15421        120 -ICSIYSLKTREGNVRVSRELPGHTGY--LS-CCRFLDDNQIVTSSGDMSCALWDIETGQQ-CASFIGH-TGDVMSLSLA  193 (340)
Q Consensus       120 -~v~i~~~~~~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~-~~~v~~~~~~  193 (340)
                       .+.+||+.++.    +...+......  .. .+.|+-+..+++---...+.++++ ++.. ...+... ...+....++
T Consensus       108 n~~~vwd~~sg~----iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsis  182 (561)
T COG5354         108 NNVFVWDIASGM----IVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSIS  182 (561)
T ss_pred             CceeEEeccCce----eEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEec
Confidence             48899987653    22333322221  11 345654444444445677999997 3321 1111111 2457778888


Q ss_pred             CCCC--EEE-----EEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEE-----------eCCCcEEEEeC
Q psy15421        194 PDMR--TFV-----SGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATG-----------SDDATCRLFDI  255 (340)
Q Consensus       194 ~~~~--~~~-----sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-----------s~d~~i~iwd~  255 (340)
                      |.++  .|+     .+..++.+++|.+..+..+.+-.-..-.-..+.|.+.|.++..-           -....++|+++
T Consensus       183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~  262 (561)
T COG5354         183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRI  262 (561)
T ss_pred             CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEee
Confidence            8643  233     36678899999987665443221111122357777777765421           11345777777


Q ss_pred             cCCcEEEEeecCCcccceEEEEEcCCCcEEEE--EeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCC
Q psy15421        256 RADQELAMYSHDNIICGITSVAFSRSGRLLLA--GYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWD  333 (340)
Q Consensus       256 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D  333 (340)
                      .........   ....+|..++|.|.++.+++  |..+..+.++++... ..  +..-+.+=+.+.|||.+++++.++.|
T Consensus       263 ~e~~i~V~~---~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp~~r~il~agF~  336 (561)
T COG5354         263 TERSIPVEK---DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSPHERYILFAGFD  336 (561)
T ss_pred             cccccceec---cccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccCcccEEEEecCC
Confidence            643322221   23457899999999887765  457888889986543 22  22233444556677777777777766


Q ss_pred             ---CcEEecC
Q psy15421        334 ---SFLRIWN  340 (340)
Q Consensus       334 ---~~i~iW~  340 (340)
                         |.+-+|+
T Consensus       337 nl~gni~i~~  346 (561)
T COG5354         337 NLQGNIEIFD  346 (561)
T ss_pred             ccccceEEec
Confidence               4455553

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.18  E-value=1.6e-09  Score=88.76  Aligned_cols=238  Identities=20%  Similarity=0.374  Sum_probs=157.6

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCC-ceEEEEeecCCCc------------ceEEEEEcCC---CeEEEEe
Q psy15421         98 SWVMTCAYAPSGSFVACGGLDNICSIYSLKTREG-NVRVSRELPGHTG------------YLSCCRFLDD---NQIVTSS  161 (340)
Q Consensus        98 ~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~~------------~v~~~~~~~~---~~l~~~~  161 (340)
                      ..|++|.|...|.|+++|...|.|.+|.-....+ ..+....+.+|..            .+..+.|.++   +.++..+
T Consensus        27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst  106 (460)
T COG5170          27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST  106 (460)
T ss_pred             ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence            5688999999999999999999999887433211 1222233444432            3455566543   3578888


Q ss_pred             CCCeEEEEECCCCc-------------------e-----------------------EEEE-ecCCCCeEEEEEcCCCCE
Q psy15421        162 GDMSCALWDIETGQ-------------------Q-----------------------CASF-IGHTGDVMSLSLAPDMRT  198 (340)
Q Consensus       162 ~d~~v~iwd~~~~~-------------------~-----------------------~~~~-~~~~~~v~~~~~~~~~~~  198 (340)
                      .|.+|++|-+....                   +                       .+.+ ..|...+.++.+..|.+.
T Consensus       107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et  186 (460)
T COG5170         107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET  186 (460)
T ss_pred             CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence            99999999874320                   0                       0001 236666788999988887


Q ss_pred             EEEEeCCCcEEEEECCCCe---eeeEecCCC-----CCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCCcE----EEEe-
Q psy15421        199 FVSGACDASAKLWDIRDGS---CKQTFPGHE-----SDINAVTFFPN-GWAFATGSDDATCRLFDIRADQE----LAMY-  264 (340)
Q Consensus       199 ~~sg~~dg~i~~wd~~~~~---~~~~~~~h~-----~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~~----~~~~-  264 (340)
                      +++ +.|-.|.+|++.-..   .+..+++|.     ..|++..|+|. ...|.-.++.|.|++-|+++...    ...+ 
T Consensus       187 ~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe  265 (460)
T COG5170         187 LLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE  265 (460)
T ss_pred             eee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhh
Confidence            775 578899999886432   233445554     45788999996 45666777789999999985321    0111 


Q ss_pred             -e--------cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc-eeeeeeccCC------------cceE---EEE
Q psy15421        265 -S--------HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT-ERAGILAGHD------------NRVS---CLG  319 (340)
Q Consensus       265 -~--------~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~-~~~~~~~~h~------------~~i~---~~~  319 (340)
                       .        ......+|..+.|+|.|+++++-+- .++++||.... .++.+..-|.            +.|.   -+.
T Consensus       266 ~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeis  344 (460)
T COG5170         266 LTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEIS  344 (460)
T ss_pred             hccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEE
Confidence             0        0122346889999999999987544 47999996533 3455543342            3343   478


Q ss_pred             ECCCCCEEEEeeCCCcEE
Q psy15421        320 VTEDGMAVATGSWDSFLR  337 (340)
Q Consensus       320 ~s~d~~~l~s~s~D~~i~  337 (340)
                      ||.|...++|||...+--
T Consensus       345 fSgd~~~v~sgsy~NNfg  362 (460)
T COG5170         345 FSGDDKHVLSGSYSNNFG  362 (460)
T ss_pred             ecCCccccccccccccee
Confidence            999999999999876543

>KOG2041|consensus

Probab=99.17  E-value=1.6e-09  Score=97.86  Aligned_cols=234  Identities=15%  Similarity=0.219  Sum_probs=164.8

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCc-----------eEEEEeecCCCcceEEEEEcCCCe-EEEEeCCCe
Q psy15421         98 SWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGN-----------VRVSRELPGHTGYLSCCRFLDDNQ-IVTSSGDMS  165 (340)
Q Consensus        98 ~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~  165 (340)
                      ....++.|.....|+++||.||.+++..+.+...+           ..+..++.+|...|..+.|.+.++ |-+...+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            44678999999999999999999999988753322           223346789999999999987765 556667999


Q ss_pred             EEEEECCCCceEEEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeee-eEecCCCCCeEEEEEecCCCEEE
Q psy15421        166 CALWDIETGQQCASFIG--HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCK-QTFPGHESDINAVTFFPNGWAFA  242 (340)
Q Consensus       166 v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~-~~~~~h~~~v~~v~~~~~~~~l~  242 (340)
                      |.+|-+-.++-+..+..  ..+-|.+++|+.+|..+.....||.|.+=.+.-++.. +.+++.  -...+.|++|.+.++
T Consensus        95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~~~L  172 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSEDLEQAL  172 (1189)
T ss_pred             EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeecccHHHHH
Confidence            99999987754433322  3455889999999999999999999877665433321 122221  234678999998888


Q ss_pred             EEeCCCcEEEEeCcCCc-------E-EEEee-cCCcccceEEEEEc--------CCCcEEEEEeCCCcEEEEeCCCceee
Q psy15421        243 TGSDDATCRLFDIRADQ-------E-LAMYS-HDNIICGITSVAFS--------RSGRLLLAGYDDFNCNVWDSMKTERA  305 (340)
Q Consensus       243 s~s~d~~i~iwd~~~~~-------~-~~~~~-~~~~~~~i~~~~~s--------~~~~~l~~g~~d~~i~iw~~~~~~~~  305 (340)
                      -+-.+|.+.++|....-       . +...+ ..+....|..+.|.        |+-..|+++..+|.+.|.-.++....
T Consensus       173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P  252 (1189)
T KOG2041|consen  173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP  252 (1189)
T ss_pred             hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence            88888999999975321       1 11000 01111124445553        58889999999999999866554433


Q ss_pred             eeeccCCcceEEEEECCCCCEEEEeeCCC
Q psy15421        306 GILAGHDNRVSCLGVTEDGMAVATGSWDS  334 (340)
Q Consensus       306 ~~~~~h~~~i~~~~~s~d~~~l~s~s~D~  334 (340)
                      ..+.. ...|..+.|+++|..|+.++.|.
T Consensus       253 vv~dt-gm~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  253 VVVDT-GMKIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             eEEec-ccEeecceecCCCcEEEEccCcc
Confidence            33332 27788999999999999988764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.17  E-value=8.5e-08  Score=93.92  Aligned_cols=269  Identities=12%  Similarity=0.159  Sum_probs=164.2

Q ss_pred             ccCcEEEEEEcCCCCeEEEEeCCCeEEEE----eCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q psy15421         54 HLAKIYAMHWGSDSRNLVSASQDGKLIVW----DSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTR  129 (340)
Q Consensus        54 h~~~v~~~~~s~~~~~l~s~~~d~~i~iw----d~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~  129 (340)
                      ..+.|.++.|-++...++.+..+|.|.+.    +..+... ..+..-+..|.+.+||||+..|+....++++.+..-. -
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-f  151 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-F  151 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-c
Confidence            34689999999999999999999999999    5444332 2223335679999999999999999988887665421 1


Q ss_pred             CCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceE--------------EEEecCCCCeEEEEEcCC
Q psy15421        130 EGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQC--------------ASFIGHTGDVMSLSLAPD  195 (340)
Q Consensus       130 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~--------------~~~~~~~~~v~~~~~~~~  195 (340)
                          .+..+.+-+....      ...+.++.++.+.=.=+.-+.|+..              ..+. +.+.-..++|-.|
T Consensus       152 ----d~i~E~~l~~~~~------~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGD  220 (928)
T PF04762_consen  152 ----DPISEVPLDSDDF------GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGD  220 (928)
T ss_pred             ----eEEEEeecCcccc------CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCC
Confidence                1222221111110      1123444444332111111112210              1122 4445678999999


Q ss_pred             CCEEEEEeC---C---CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeC---CCcEEEEeCcCCcEEEEeec
Q psy15421        196 MRTFVSGAC---D---ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSD---DATCRLFDIRADQELAMYSH  266 (340)
Q Consensus       196 ~~~~~sg~~---d---g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~  266 (340)
                      |.+|++.+.   +   +.+|+|+- +|.+-.+-+.-.+--.+++|.|.|..+|+.-.   ...|.+|. +++..-..|..
T Consensus       221 G~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l  298 (928)
T PF04762_consen  221 GEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTL  298 (928)
T ss_pred             CcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEec
Confidence            999997664   2   57899984 46644333322333347899999999988765   23455554 34433334432


Q ss_pred             C--CcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCcee--eeeec-cCCcceEEEEECCCC-CEEEEeeCCCcEEe
Q psy15421        267 D--NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTER--AGILA-GHDNRVSCLGVTEDG-MAVATGSWDSFLRI  338 (340)
Q Consensus       267 ~--~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~--~~~~~-~h~~~i~~~~~s~d~-~~l~s~s~D~~i~i  338 (340)
                      .  .....|..+.|++|+.+||.-..|. |.+|...+..-  ...+. .....+..+.|+|.. ..|.....+|.+..
T Consensus       299 ~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~  375 (928)
T PF04762_consen  299 RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEI  375 (928)
T ss_pred             CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEE
Confidence            2  2334589999999999999988776 99998776542  12222 223345558999854 44555555555543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.14  E-value=9.6e-07  Score=74.26  Aligned_cols=262  Identities=16%  Similarity=0.228  Sum_probs=163.2

Q ss_pred             CCeEEEEeCCCCCe-e--EEeeCCCCcEEEEEECCCCCEEEEEeCC---CeEEEEEccCCCCceEEEEe--ecCCCcceE
Q psy15421         76 DGKLIVWDSYTTNK-V--HAIPLRSSWVMTCAYAPSGSFVACGGLD---NICSIYSLKTREGNVRVSRE--LPGHTGYLS  147 (340)
Q Consensus        76 d~~i~iwd~~~~~~-~--~~~~~~~~~i~~v~~~~~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~--~~~~~~~v~  147 (340)
                      ++-|++|++.+..- +  ...-.....+.-++++|+.++|.++..+   +.|..|.+....+.....-.  .+++..  .
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p--~   92 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP--C   92 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC--e
Confidence            56799998763321 1  1122334556788999999999887654   67788888765454433322  223222  3


Q ss_pred             EEEEcCCCe-EEEEe-CCCeEEEEECCC-Cce--EEEEecCCCC----------eEEEEEcCCCCEEEEEe-CCCcEEEE
Q psy15421        148 CCRFLDDNQ-IVTSS-GDMSCALWDIET-GQQ--CASFIGHTGD----------VMSLSLAPDMRTFVSGA-CDASAKLW  211 (340)
Q Consensus       148 ~~~~~~~~~-l~~~~-~d~~v~iwd~~~-~~~--~~~~~~~~~~----------v~~~~~~~~~~~~~sg~-~dg~i~~w  211 (340)
                      -+...++++ ++++. ..+.|.++-++. |..  ......|.+.          +-...+.|+++++++.. .--.|.+|
T Consensus        93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y  172 (346)
T COG2706          93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY  172 (346)
T ss_pred             EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence            344556664 44443 478899998865 322  2223345554          77889999999888765 45689999


Q ss_pred             ECCCCeeeeEec---CCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCcCC-cEEEEeec-----CCc--ccceEEEEEc
Q psy15421        212 DIRDGSCKQTFP---GHESDINAVTFFPNGWAFATGSD-DATCRLFDIRAD-QELAMYSH-----DNI--ICGITSVAFS  279 (340)
Q Consensus       212 d~~~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s~s~-d~~i~iwd~~~~-~~~~~~~~-----~~~--~~~i~~~~~s  279 (340)
                      ++..|.+...-+   ......+-|.|+|++++...... +++|.+|.+... ..+..+..     ...  .....++..+
T Consensus       173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis  252 (346)
T COG2706         173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS  252 (346)
T ss_pred             EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence            999876532211   23345678999999998766555 889999998763 22222110     111  1235688899


Q ss_pred             CCCcEEEEEeC-CCcEEEEeCCC--ce--eeeeeccCCcceEEEEECCCCCEEEEeeCCC-cEEec
Q psy15421        280 RSGRLLLAGYD-DFNCNVWDSMK--TE--RAGILAGHDNRVSCLGVTEDGMAVATGSWDS-FLRIW  339 (340)
Q Consensus       280 ~~~~~l~~g~~-d~~i~iw~~~~--~~--~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~-~i~iW  339 (340)
                      |||++|.++-. ...|.+|.+..  ++  .+.....+...-....|++.|++|+.+..|+ +|.++
T Consensus       253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf  318 (346)
T COG2706         253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF  318 (346)
T ss_pred             CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence            99999988643 23577776532  22  2223334444567788999999988887764 35443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.13  E-value=9.6e-09  Score=84.24  Aligned_cols=243  Identities=16%  Similarity=0.279  Sum_probs=159.8

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC-----eeEEeeCCC------------CcEEEEEECCC--CCEEEEE
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN-----KVHAIPLRS------------SWVMTCAYAPS--GSFVACG  115 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~------------~~i~~v~~~~~--~~~l~~~  115 (340)
                      .+.|+++.|...|.++++|...|.|.++.-....     -...++.|.            ..|..+.|-.+  ...++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4678999999999999999999999999644322     111233432            23666766543  3467778


Q ss_pred             eCCCeEEEEEccCCC------------------Cce---------------EEEE------eecCCCcceEEEEEcCCCe
Q psy15421        116 GLDNICSIYSLKTRE------------------GNV---------------RVSR------ELPGHTGYLSCCRFLDDNQ  156 (340)
Q Consensus       116 ~~d~~v~i~~~~~~~------------------~~~---------------~~~~------~~~~~~~~v~~~~~~~~~~  156 (340)
                      +.|+++++|.+....                  +..               .+..      ...+|+-.+.++.+..+..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            899999999987541                  100               0000      0134666677777777776


Q ss_pred             EEEEeCCCeEEEEECCCCceEEE---EecCCC-----CeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeee----eE--
Q psy15421        157 IVTSSGDMSCALWDIETGQQCAS---FIGHTG-----DVMSLSLAPDM-RTFVSGACDASAKLWDIRDGSCK----QT--  221 (340)
Q Consensus       157 l~~~~~d~~v~iwd~~~~~~~~~---~~~~~~-----~v~~~~~~~~~-~~~~sg~~dg~i~~wd~~~~~~~----~~--  221 (340)
                      .+..+.|-.|.+|+++.......   +..|.-     -+++..|+|.. ..+.-.+..|+|++-|+|...+.    ..  
T Consensus       186 t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe  265 (460)
T COG5170         186 TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE  265 (460)
T ss_pred             eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhh
Confidence            66677889999999875443332   233332     36788899864 35555678999999999854311    11  


Q ss_pred             ----------ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcC-CcEEEEee-cCCc------------ccceEEEE
Q psy15421        222 ----------FPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRA-DQELAMYS-HDNI------------ICGITSVA  277 (340)
Q Consensus       222 ----------~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~-~~~~------------~~~i~~~~  277 (340)
                                +.+--..|..+.|+++|+++++-.. -+++|||.+. ..++.+.. |...            ...--.+.
T Consensus       266 ~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeis  344 (460)
T COG5170         266 LTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEIS  344 (460)
T ss_pred             hccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEE
Confidence                      1122346788999999999988764 6899999874 34444442 1111            11124578


Q ss_pred             EcCCCcEEEEEeCCCcEEEEe
Q psy15421        278 FSRSGRLLLAGYDDFNCNVWD  298 (340)
Q Consensus       278 ~s~~~~~l~~g~~d~~i~iw~  298 (340)
                      |+.|.+.+++|+.....-+|-
T Consensus       345 fSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         345 FSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             ecCCcccccccccccceeeec
Confidence            899999999999887777775

>KOG3914|consensus

Probab=99.11  E-value=9.9e-10  Score=92.73  Aligned_cols=147  Identities=16%  Similarity=0.198  Sum_probs=96.5

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCee----eeEecCCCCCeEEEEEecCCCEEEEE---eCCCcEEEEeCcCCcEE
Q psy15421        189 SLSLAPDMRTFVSGACDASAKLWDIRDGSC----KQTFPGHESDINAVTFFPNGWAFATG---SDDATCRLFDIRADQEL  261 (340)
Q Consensus       189 ~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~----~~~~~~h~~~v~~v~~~~~~~~l~s~---s~d~~i~iwd~~~~~~~  261 (340)
                      .+..+|.+++++.+..+....+++++....    ...+. -...-+++.|..+......+   +....+.+|....+...
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~  145 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE  145 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence            344567777888777777777777654332    11111 11223344444444444433   44444555555445454


Q ss_pred             EEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc-eeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        262 AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT-ERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       262 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~-~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ..++|.   ..++.++|+||+++++++..|..|++-..... .....+-||...|..++.-++. .|+|||.|+++++||
T Consensus       146 ~~lGhv---Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  146 PILGHV---SMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWD  221 (390)
T ss_pred             hhhhhh---hhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEe
Confidence            455544   34889999999999999999999998654322 2233456899999999988775 489999999999997

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.11  E-value=9.4e-08  Score=93.62  Aligned_cols=271  Identities=15%  Similarity=0.146  Sum_probs=160.7

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCce--
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNV--  133 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~--  133 (340)
                      ..|.+++||||...|+-+..++++.+-+ .+.+.+...+.+...       ......++.|+.+.=.=+.-  ..++.  
T Consensus       121 ~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~-------~~~~~~VsVGWGkKeTQF~G--s~gK~aa  190 (928)
T PF04762_consen  121 SGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDD-------FGESKHVSVGWGKKETQFHG--SAGKAAA  190 (928)
T ss_pred             CcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCccc-------cCCCceeeeccCcccCccCc--chhhhhh
Confidence            5799999999999999999999998885 445555554443221       01122333333322000000  00000  


Q ss_pred             ------EE----EEeecCCCcceEEEEEcCCCeEEE-EeC------CCeEEEEECCCCceEEEEecCCCCeEEEEEcCCC
Q psy15421        134 ------RV----SRELPGHTGYLSCCRFLDDNQIVT-SSG------DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDM  196 (340)
Q Consensus       134 ------~~----~~~~~~~~~~v~~~~~~~~~~l~~-~~~------d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  196 (340)
                            ..    ...+. +...-..+.|..++.+++ .+-      -+.+++|+-+ |+.....+.-.+--.+++|.|.|
T Consensus       191 ~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG  268 (928)
T PF04762_consen  191 RQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG  268 (928)
T ss_pred             hhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC
Confidence                  00    01111 222344567776665443 321      2579999987 56555544444445689999999


Q ss_pred             CEEEEEeC---CCcEEEEECCCCeeeeEe----cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCc-EEEEeecCC
Q psy15421        197 RTFVSGAC---DASAKLWDIRDGSCKQTF----PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ-ELAMYSHDN  268 (340)
Q Consensus       197 ~~~~sg~~---dg~i~~wd~~~~~~~~~~----~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~  268 (340)
                      +++++.-.   ...|.+|. ++|-....|    ......|..+.|++|+..||..-.|. |.+|-..+.. -+++.-.-.
T Consensus       269 ~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~  346 (928)
T PF04762_consen  269 NLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS  346 (928)
T ss_pred             CEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc
Confidence            99887654   45566676 445333332    23456899999999999999987665 9999887643 122111111


Q ss_pred             cccceEEEEEcCCCc-EEEEEeCCCcEEEEeCC----Cc--------eeeeeec-----------------------cCC
Q psy15421        269 IICGITSVAFSRSGR-LLLAGYDDFNCNVWDSM----KT--------ERAGILA-----------------------GHD  312 (340)
Q Consensus       269 ~~~~i~~~~~s~~~~-~l~~g~~d~~i~iw~~~----~~--------~~~~~~~-----------------------~h~  312 (340)
                      ....+..+.|+|... .|...+.++.+..++..    ..        .......                       .-.
T Consensus       347 ~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~  426 (928)
T PF04762_consen  347 SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELP  426 (928)
T ss_pred             CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCC
Confidence            112345589999644 46666666777655421    00        0111111                       124


Q ss_pred             cceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        313 NRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       313 ~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .+|++++|++++..++.-..||+|.+|.
T Consensus       427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~  454 (928)
T PF04762_consen  427 SPVNDVAFSPSNSRFAVLTSDGSLSIYE  454 (928)
T ss_pred             CCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence            6899999999998888888999988873

>KOG4190|consensus

Probab=99.11  E-value=4.8e-10  Score=98.34  Aligned_cols=209  Identities=17%  Similarity=0.242  Sum_probs=144.8

Q ss_pred             EEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCce---EEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEE
Q psy15421         91 HAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNV---RVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCA  167 (340)
Q Consensus        91 ~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~  167 (340)
                      ..+.+|...|..++--.+.+-+++++.|++|++|.++......   ..+.+...|...+..+-|..+.+.+ ++.|+-+.
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i-~ScD~giH  807 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI-ASCDGGIH  807 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecccee-eeccCcce
Confidence            4556777777776666678889999999999999998643222   2456677899999888887665432 34589999


Q ss_pred             EEECCCCceEEEEec---C--CCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeeeEec-----CCCCCeEEEEEec
Q psy15421        168 LWDIETGQQCASFIG---H--TGDVMSLSLAPDMRTFV-SGACDASAKLWDIRDGSCKQTFP-----GHESDINAVTFFP  236 (340)
Q Consensus       168 iwd~~~~~~~~~~~~---~--~~~v~~~~~~~~~~~~~-sg~~dg~i~~wd~~~~~~~~~~~-----~h~~~v~~v~~~~  236 (340)
                      +||.--+..+..+..   |  .+.|.|+--. +...++ -++...+|+++|.+.+.-...++     +....+.++++.|
T Consensus       808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~  886 (1034)
T KOG4190|consen  808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD  886 (1034)
T ss_pred             eecccccchhHhhhcCcccCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence            999877765543221   2  2223333221 233333 34789999999999876555543     3445688999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEE-EeCCCcee
Q psy15421        237 NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNV-WDSMKTER  304 (340)
Q Consensus       237 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~i-w~~~~~~~  304 (340)
                      .|+.++.+-.+|.|-+.|.++++.+..+...  .+.+..++ .|..+.|+...-|.++.+ |....+..
T Consensus       887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpm--ecdllqla-apsdq~L~~saldHslaVnWhaldgim  952 (1034)
T KOG4190|consen  887 KGNKLAAALSNGCIAILDARNGKVINSWRPM--ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIM  952 (1034)
T ss_pred             CcchhhHHhcCCcEEEEecCCCceeccCCcc--cchhhhhc-CchhHHHHhhcccceeEeeehhcCCee
Confidence            9999999999999999999998876655332  23333322 466777887777888888 87655543

>KOG1409|consensus

Probab=99.10  E-value=5.2e-09  Score=86.81  Aligned_cols=246  Identities=13%  Similarity=0.163  Sum_probs=163.3

Q ss_pred             eEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEE
Q psy15421         90 VHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCAL  168 (340)
Q Consensus        90 ~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~i  168 (340)
                      +..+.++.+.++....-|...-+.+.+.|.+++||.-+...+-  ...........+.++.+..+. .|+.+-..|++.=
T Consensus        17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~--wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte   94 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY--WPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE   94 (404)
T ss_pred             hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccccc--CchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence            3445667777777777777777889999999999986543221  112222345566777776554 5667777888887


Q ss_pred             EECC----CCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEE
Q psy15421        169 WDIE----TGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATG  244 (340)
Q Consensus       169 wd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~  244 (340)
                      +.+.    .....+....|...++.+-|+-..+.+++.+.|..+.---.+.+..+..+.- ..+-.++.+.-.  +...|
T Consensus        95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvG  171 (404)
T KOG1409|consen   95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVG  171 (404)
T ss_pred             EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEec
Confidence            7543    3334556678999999999998888999999998875444444432222110 001111111111  34445


Q ss_pred             eCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCce-eeeeeccCCcceEEEEECCC
Q psy15421        245 SDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTE-RAGILAGHDNRVSCLGVTED  323 (340)
Q Consensus       245 s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~-~~~~~~~h~~~i~~~~~s~d  323 (340)
                      -..|.|.+-.+.............+..++.+..|.|....|.+|..|..+-+||+--.+ ....+.+|.+.|..+..-+-
T Consensus       172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~  251 (404)
T KOG1409|consen  172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQH  251 (404)
T ss_pred             ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhh
Confidence            55555554444322221222223445679999999999999999999999999975332 34567899999999988888


Q ss_pred             CCEEEEeeCCCcEEecC
Q psy15421        324 GMAVATGSWDSFLRIWN  340 (340)
Q Consensus       324 ~~~l~s~s~D~~i~iW~  340 (340)
                      -+.|.|++.||.|-+||
T Consensus       252 t~~l~S~~edg~i~~w~  268 (404)
T KOG1409|consen  252 TRQLISCGEDGGIVVWN  268 (404)
T ss_pred             heeeeeccCCCeEEEEe
Confidence            88999999999999996

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.10  E-value=3e-07  Score=76.72  Aligned_cols=218  Identities=21%  Similarity=0.171  Sum_probs=139.3

Q ss_pred             CCCeEEEEeCCCCCeeEEeeCCC--CcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEc
Q psy15421         75 QDGKLIVWDSYTTNKVHAIPLRS--SWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL  152 (340)
Q Consensus        75 ~d~~i~iwd~~~~~~~~~~~~~~--~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  152 (340)
                      .+|+|..||..+++.+.......  ...... ..+++.++++++.++.+..||..+++.  .....++......   ...
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~--~W~~~~~~~~~~~---~~~   74 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKV--LWRFDLPGPISGA---PVV   74 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEE--EEEEECSSCGGSG---EEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCE--EEEeeccccccce---eee
Confidence            36899999999999887776422  111111 233577777788999999999876643  3333332221111   123


Q ss_pred             CCCeEEEEeCCCeEEEEECCCCceEEEE-ecCCC---CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCC
Q psy15421        153 DDNQIVTSSGDMSCALWDIETGQQCASF-IGHTG---DVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESD  228 (340)
Q Consensus       153 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~---~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~  228 (340)
                      .++.++.++.++.+..+|..+|+..... .....   ....+.....+..++.+..++.|..+|.++|+.+-..+....+
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~  154 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR  154 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence            4667777778889999999999988774 32211   1122223334778888888999999999999987766553322


Q ss_pred             ----------eEEEEEecCCCEEEEEeCCCc-EEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEE
Q psy15421        229 ----------INAVTFFPNGWAFATGSDDAT-CRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW  297 (340)
Q Consensus       229 ----------v~~v~~~~~~~~l~s~s~d~~-i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw  297 (340)
                                +..-....++ .+..++.++. +.+ |..+++.+.... ..   .+.. ...+++..|++++.++.+..|
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~~l~~~  227 (238)
T PF13360_consen  155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDGRLYAL  227 (238)
T ss_dssp             SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred             CCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCCEEEEE
Confidence                      1222222345 6666666775 555 999888665322 11   1222 134677888888899999999


Q ss_pred             eCCCceee
Q psy15421        298 DSMKTERA  305 (340)
Q Consensus       298 ~~~~~~~~  305 (340)
                      |..+++..
T Consensus       228 d~~tG~~~  235 (238)
T PF13360_consen  228 DLKTGKVV  235 (238)
T ss_dssp             ETTTTEEE
T ss_pred             ECCCCCEE
Confidence            99998754

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.09  E-value=2.1e-06  Score=72.11  Aligned_cols=216  Identities=18%  Similarity=0.131  Sum_probs=136.5

Q ss_pred             EEEECC-CCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEc-CCCeEEEEeCCCeEEEEECCCCceEEE
Q psy15421        102 TCAYAP-SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL-DDNQIVTSSGDMSCALWDIETGQQCAS  179 (340)
Q Consensus       102 ~v~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~  179 (340)
                      ...|.+ ++.++++--..+.|..|+..++.   ......+.    ...+.+. +++.++.+...+. .++|+.+++....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~---~~~~~~~~----~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~   75 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE---VEVIDLPG----PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTE---EEEEESSS----EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCe---EEEEecCC----CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEE
Confidence            356776 66666666677888888875542   11122222    3334444 6677777766554 5559988754332


Q ss_pred             Eec-----CCCCeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEE-EEEe
Q psy15421        180 FIG-----HTGDVMSLSLAPDMRTFVSGACD--------ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF-ATGS  245 (340)
Q Consensus       180 ~~~-----~~~~v~~~~~~~~~~~~~sg~~d--------g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~s  245 (340)
                      ...     ....++.+++.|+++++++....        |.|..++.. ++...... .-...+.++|+|+++.| ++-+
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred             eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence            222     23357899999999988876654        557777776 55433333 34557899999999866 4667


Q ss_pred             CCCcEEEEeCcCCcE-E---EEe-ecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEE
Q psy15421        246 DDATCRLFDIRADQE-L---AMY-SHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV  320 (340)
Q Consensus       246 ~d~~i~iwd~~~~~~-~---~~~-~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~  320 (340)
                      ..+.|..+++..... +   ..+ .........-.+++.++|++.++....+.|.+++-. ++.+..+.--...+++++|
T Consensus       154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence            788899999863221 1   112 111111125678999999999998899999999955 7777666544568999999


Q ss_pred             -CCCCCEEE
Q psy15421        321 -TEDGMAVA  328 (340)
Q Consensus       321 -s~d~~~l~  328 (340)
                       .++...|.
T Consensus       233 gg~~~~~L~  241 (246)
T PF08450_consen  233 GGPDGKTLY  241 (246)
T ss_dssp             ESTTSSEEE
T ss_pred             ECCCCCEEE
Confidence             46655443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4714|consensus

Probab=99.09  E-value=3.6e-09  Score=84.54  Aligned_cols=152  Identities=19%  Similarity=0.263  Sum_probs=97.2

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecC-CCcceEEEEEcCCCeEEEEeC------CCeEEEEECCCC
Q psy15421        102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPG-HTGYLSCCRFLDDNQIVTSSG------DMSCALWDIETG  174 (340)
Q Consensus       102 ~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~------d~~v~iwd~~~~  174 (340)
                      +-..+-.++.++++..|+.+.+++.+.   .......++. |.+.. ..++...+.++.+..      -+..+.|+++..
T Consensus        94 ~~~~s~~~t~V~~~~~dg~~~v~s~~~---~~~~~~~i~~~~~~~a-s~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~  169 (319)
T KOG4714|consen   94 NDACTMTDNRVCIGYADGSLAVFSTDK---DLALMSRIPSIHSGSA-SRKICRHGNSILSGGCGNWNAQDNFYANTLDPI  169 (319)
T ss_pred             cccccccCCceEecCCCceEEEEechH---HHhhhhhccccccccc-ccceeecccEEecCCcceEeeccceeeeccccc
Confidence            333444577889999999999988654   1111122221 22211 112222233333332      234556666544


Q ss_pred             ceEEEEecCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeee-eEecCCCCCeEEEEEec-CCCEEEEEeCCCcEE
Q psy15421        175 QQCASFIGHTGDVMSLSLAPDMRT-FVSGACDASAKLWDIRDGSCK-QTFPGHESDINAVTFFP-NGWAFATGSDDATCR  251 (340)
Q Consensus       175 ~~~~~~~~~~~~v~~~~~~~~~~~-~~sg~~dg~i~~wd~~~~~~~-~~~~~h~~~v~~v~~~~-~~~~l~s~s~d~~i~  251 (340)
                      +....-..-...|.+++-+|..+. +++|+.||.+-+||+++.... -.++.|+.+++.|.|+| ++..|++++.||.+.
T Consensus       170 ~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw  249 (319)
T KOG4714|consen  170 KTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLW  249 (319)
T ss_pred             ccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEE
Confidence            332221112234899999997665 557888999999999987543 34678999999999998 577999999999999


Q ss_pred             EEeCcC
Q psy15421        252 LFDIRA  257 (340)
Q Consensus       252 iwd~~~  257 (340)
                      -||..+
T Consensus       250 ~wdas~  255 (319)
T KOG4714|consen  250 HWDAST  255 (319)
T ss_pred             EEcCCC
Confidence            999764

>KOG0280|consensus

Probab=99.09  E-value=6e-08  Score=78.99  Aligned_cols=165  Identities=16%  Similarity=0.138  Sum_probs=116.5

Q ss_pred             EEEEeCCCeEEEEECCCCceEEEEecCCC------CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeee--eEecCCCCC
Q psy15421        157 IVTSSGDMSCALWDIETGQQCASFIGHTG------DVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCK--QTFPGHESD  228 (340)
Q Consensus       157 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~--~~~~~h~~~  228 (340)
                      ++-+-..|+|.++..........+.+...      ...++.|++.+..++++-.+|.+.+-+.......  +.+++|+-+
T Consensus        88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E  167 (339)
T KOG0280|consen   88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE  167 (339)
T ss_pred             eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee
Confidence            44455678888887654443333333211      2457889999999999999999997666655543  478999999


Q ss_pred             eEEEEEecC-CCEEEEEeCCCcEEEEeCcCCcEEEEee-cCCcccceEEEEEcC-CCcEEEEEeCCCcEEEEeCCCc-ee
Q psy15421        229 INAVTFFPN-GWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSR-SGRLLLAGYDDFNCNVWDSMKT-ER  304 (340)
Q Consensus       229 v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~-~~~~l~~g~~d~~i~iw~~~~~-~~  304 (340)
                      .+...|+.. ...+.+||.|+.+..||++..+. ..+. ...+..+|.++.-+| ...++++|+-|-.|++||.++. ++
T Consensus       168 ~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP  246 (339)
T KOG0280|consen  168 AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP  246 (339)
T ss_pred             eeeeecccCCCceEEecCCCceEEEEEecCCcc-eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence            999999854 45889999999999999994432 1221 223345688887775 4779999999999999998743 33


Q ss_pred             eeeeccCCcceEEEEECCC
Q psy15421        305 AGILAGHDNRVSCLGVTED  323 (340)
Q Consensus       305 ~~~~~~h~~~i~~~~~s~d  323 (340)
                      +. -..-.+.|+-+.++|.
T Consensus       247 l~-~~~v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  247 LF-KAKVGGGVWRIKHHPE  264 (339)
T ss_pred             cc-cCccccceEEEEecch
Confidence            32 2234477888888874

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.02  E-value=6.7e-10  Score=64.24  Aligned_cols=39  Identities=26%  Similarity=0.559  Sum_probs=36.6

Q ss_pred             ceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        302 TERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       302 ~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++++..+.+|.+.|++++|+|++.+|++||.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.02  E-value=5.3e-07  Score=78.26  Aligned_cols=215  Identities=19%  Similarity=0.271  Sum_probs=142.8

Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeE-Ee--eCC---CC--cEEEEE----ECC-CCCEEEEEeCCCeEEEEEc
Q psy15421         60 AMHWGSDSRNLVSASQDGKLIVWDSYTTNKVH-AI--PLR---SS--WVMTCA----YAP-SGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        60 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~--~~~---~~--~i~~v~----~~~-~~~~l~~~~~d~~v~i~~~  126 (340)
                      +-..+.||+.++- +.-|.|.++|..+.+... .+  +..   ..  .+.-..    |++ +|.+++..+..+. .+.+.
T Consensus       271 ~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGka-Fi~~~  348 (668)
T COG4946         271 PRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKA-FIMRP  348 (668)
T ss_pred             ccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcE-EEECC
Confidence            3344678887653 666789999987654321 11  111   00  111111    332 6888888877654 34332


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEc-CCCeEEEEeCCC-eEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFL-DDNQIVTSSGDM-SCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC  204 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~-~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~  204 (340)
                      ..+   ..++   .+|...|.-..+. +.+.++.|..|| .+-++|..+++ ..++...-+.|.++..+|+|+.++.+..
T Consensus       349 ~~~---~~iq---v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNd  421 (668)
T COG4946         349 WDG---YSIQ---VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVAND  421 (668)
T ss_pred             CCC---eeEE---cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcC
Confidence            211   1111   2455556555554 334677888888 89999998875 4566667788999999999999999999


Q ss_pred             CCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCC----CcEEEEeCcCCcEEEEeecCCcccceEEEEEcC
Q psy15421        205 DASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDD----ATCRLFDIRADQELAMYSHDNIICGITSVAFSR  280 (340)
Q Consensus       205 dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  280 (340)
                      ..++.+.|+.++.....-+...+-|+..+|+|+++.+|-+-.+    ..|+++|+..++.........+.   .+-+|.|
T Consensus       422 r~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~D---fsPaFD~  498 (668)
T COG4946         422 RFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYD---FSPAFDP  498 (668)
T ss_pred             ceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccc---cCcccCC
Confidence            9999999999998665556666789999999999999876555    46899999887654433222221   2347777


Q ss_pred             CCcEEE
Q psy15421        281 SGRLLL  286 (340)
Q Consensus       281 ~~~~l~  286 (340)
                      ++++|.
T Consensus       499 d~ryLY  504 (668)
T COG4946         499 DGRYLY  504 (668)
T ss_pred             CCcEEE
Confidence            877654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.98  E-value=2.8e-09  Score=61.56  Aligned_cols=38  Identities=42%  Similarity=0.805  Sum_probs=35.8

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEe
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD   83 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd   83 (340)
                      +..+++++|.+.|++++|+|++..|+|++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            35678999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.98  E-value=8.9e-06  Score=70.87  Aligned_cols=107  Identities=12%  Similarity=0.076  Sum_probs=82.2

Q ss_pred             CCCCeEEEEEecCCCEEEEEeCCC-cEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCce
Q psy15421        225 HESDINAVTFFPNGWAFATGSDDA-TCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTE  303 (340)
Q Consensus       225 h~~~v~~v~~~~~~~~l~s~s~d~-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~  303 (340)
                      |.+.|.-..+..++.-++.|..|| .+-|+|.++.......   .....|-++..+|+|++++++-+...+-+.|+.++.
T Consensus       358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e---~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE---KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             CCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee---CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            334455555555666788899998 7899998876533222   223348899999999999999999999999999987


Q ss_pred             eeeeeccCCcceEEEEECCCCCEEEEeeCCC
Q psy15421        304 RAGILAGHDNRVSCLGVTEDGMAVATGSWDS  334 (340)
Q Consensus       304 ~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~  334 (340)
                      ....-....+-|+...|||+++++|-+--+|
T Consensus       435 v~~idkS~~~lItdf~~~~nsr~iAYafP~g  465 (668)
T COG4946         435 VRLIDKSEYGLITDFDWHPNSRWIAYAFPEG  465 (668)
T ss_pred             eeEecccccceeEEEEEcCCceeEEEecCcc
Confidence            7655556678899999999999999766554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.97  E-value=9.6e-07  Score=79.54  Aligned_cols=256  Identities=11%  Similarity=0.022  Sum_probs=151.8

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEE-EEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeec-----
Q psy15421         67 SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMT-CAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELP-----  140 (340)
Q Consensus        67 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~-v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~-----  140 (340)
                      +..++.++.++.++.+|..+++.+...+.... +.+ ...  .+..++.+..++.+..+|..+++.........+     
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~  196 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE-ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR  196 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCc-eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence            44566778899999999999998776654332 211 111  244566677788888888877654333221101     


Q ss_pred             CCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCC-------CeEEEEEcC--CCCEEEEEeCCCcEEEE
Q psy15421        141 GHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTG-------DVMSLSLAP--DMRTFVSGACDASAKLW  211 (340)
Q Consensus       141 ~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~~~sg~~dg~i~~w  211 (340)
                      +...++     ..++.++.+..++.+...|..+|+..........       ....+..+|  .+..++.++.+|.+.-+
T Consensus       197 ~~~sP~-----v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al  271 (394)
T PRK11138        197 GESAPA-----TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL  271 (394)
T ss_pred             CCCCCE-----EECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence            001111     1234567778899999999998876544321100       001111122  24566777889999999


Q ss_pred             ECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCC
Q psy15421        212 DIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD  291 (340)
Q Consensus       212 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d  291 (340)
                      |..+|+.+-..+  ......+..  .+..+..++.+|.+..+|..+++.+......... ...+...  .+.+|+.++.|
T Consensus       272 d~~tG~~~W~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~sp~v--~~g~l~v~~~~  344 (394)
T PRK11138        272 DLRSGQIVWKRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR-LLTAPVL--YNGYLVVGDSE  344 (394)
T ss_pred             ECCCCCEEEeec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC-cccCCEE--ECCEEEEEeCC
Confidence            999987653332  111112222  3456777788999999999888776543211100 0111112  25577888999


Q ss_pred             CcEEEEeCCCceeeeeeccCCcceEE-EEECCCCCEEEEeeCCCcEEec
Q psy15421        292 FNCNVWDSMKTERAGILAGHDNRVSC-LGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       292 ~~i~iw~~~~~~~~~~~~~h~~~i~~-~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      |.+...|..+++.+....-....+.+ -.+  .+..|+.++.||.+..+
T Consensus       345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~  391 (394)
T PRK11138        345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAI  391 (394)
T ss_pred             CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEE
Confidence            99999999999877665433333332 112  23467788999988764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.96  E-value=3.1e-06  Score=69.17  Aligned_cols=236  Identities=17%  Similarity=0.219  Sum_probs=130.3

Q ss_pred             EEEcCCCCeEEEEeCCCeEEEEeCCCCCe--e--EEee-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEE
Q psy15421         61 MHWGSDSRNLVSASQDGKLIVWDSYTTNK--V--HAIP-LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV  135 (340)
Q Consensus        61 ~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~--~~~~-~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  135 (340)
                      ++.+.+|+.|| .-.|..|.|-...+.-.  +  ..++ .....-.-++||||+.+||.+...|+|+++|+.... ...+
T Consensus         3 ~~~~~~Gk~lA-i~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLA-ILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVI   80 (282)
T ss_pred             eeecCCCcEEE-EEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEc
Confidence            45667787665 46677777775543211  1  1121 111223568999999999999999999999986421 1111


Q ss_pred             EE--eecC-CCcceEEEEEcCC-------CeEEEEeCCCeEEEEECCCC-----ceEEEEe--c-CCCCeEEEEEcCCCC
Q psy15421        136 SR--ELPG-HTGYLSCCRFLDD-------NQIVTSSGDMSCALWDIETG-----QQCASFI--G-HTGDVMSLSLAPDMR  197 (340)
Q Consensus       136 ~~--~~~~-~~~~v~~~~~~~~-------~~l~~~~~d~~v~iwd~~~~-----~~~~~~~--~-~~~~v~~~~~~~~~~  197 (340)
                      ..  ..++ -...|..+.|.+.       ..|+.-...|.++-|-+..+     +....+.  . +...|.++.++|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            11  1111 1234455555421       24677778888887775322     2223332  2 356799999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCE--EEEEeCCCc------EEEEeCcCCcEEEEee-cCC
Q psy15421        198 TFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA--FATGSDDAT------CRLFDIRADQELAMYS-HDN  268 (340)
Q Consensus       198 ~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~--l~s~s~d~~------i~iwd~~~~~~~~~~~-~~~  268 (340)
                      +|+.|+....      +.+..    ++-...+++=.+-.+..+  .++...|+.      ..+|.+-+.   ..+. ...
T Consensus       161 LLlVgG~~~~------~~~~s----~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~~~  227 (282)
T PF15492_consen  161 LLLVGGCEQN------QDGMS----KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQGQ  227 (282)
T ss_pred             EEEEeccCCC------CCccc----cccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce---eeeecccc
Confidence            8887765432      11100    001111111111111111  112222211      123322211   1111 122


Q ss_pred             cccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccC
Q psy15421        269 IICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGH  311 (340)
Q Consensus       269 ~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h  311 (340)
                      ....|..|..||||+.||+...+|.|.+|++-+..+.+....+
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            3346899999999999999999999999998877776655444

>KOG1912|consensus

Probab=98.95  E-value=3e-08  Score=90.56  Aligned_cols=243  Identities=14%  Similarity=0.192  Sum_probs=152.1

Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCC--CEEEEEeCCCeEEEEEccCCCCceE---
Q psy15421         60 AMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSG--SFVACGGLDNICSIYSLKTREGNVR---  134 (340)
Q Consensus        60 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~--~~l~~~~~d~~v~i~~~~~~~~~~~---  134 (340)
                      .++|+|--+.++-..--+.+.++|++=...+..++...+.+.-+.+-|++  ..|++.-.||.+.+|--+.......   
T Consensus       235 ~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~  314 (1062)
T KOG1912|consen  235 QFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPN  314 (1062)
T ss_pred             hhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccc
Confidence            34567765555555666789999998777777777666655566666654  5788999999999986554211111   


Q ss_pred             ------------EEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEE-----------------------
Q psy15421        135 ------------VSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCAS-----------------------  179 (340)
Q Consensus       135 ------------~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-----------------------  179 (340)
                                  ..+........+..++....+.++.--.+|.+.+|.+.+|+....                       
T Consensus       315 ~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k  394 (1062)
T KOG1912|consen  315 ASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGK  394 (1062)
T ss_pred             hhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhh
Confidence                        111111111111111111122233333567777887765432100                       


Q ss_pred             --------EecCCCCeEEEEEcC-----------CC-------CEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEE
Q psy15421        180 --------FIGHTGDVMSLSLAP-----------DM-------RTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVT  233 (340)
Q Consensus       180 --------~~~~~~~v~~~~~~~-----------~~-------~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~  233 (340)
                              .-+|.....+....|           .+       .+++.|...|+|.++|+.++..-+.+..|...|.++.
T Consensus       395 ~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~Vkgle  474 (1062)
T KOG1912|consen  395 TSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLE  474 (1062)
T ss_pred             ccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeee
Confidence                    013444444444433           12       2467899999999999999988888889999999999


Q ss_pred             EecCCCEE---------EEEeCCCcEEEEeCcCCcEEEEee-cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc
Q psy15421        234 FFPNGWAF---------ATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT  302 (340)
Q Consensus       234 ~~~~~~~l---------~s~s~d~~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~  302 (340)
                      |-.....+         ++|+.-+.+.+-|++++....... ......+|..+..+..++||+....+.-+.+||+++.
T Consensus       475 W~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~  553 (1062)
T KOG1912|consen  475 WLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL  553 (1062)
T ss_pred             eccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence            98654332         233334556777888765443321 2334567999999999999999999999999997543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.93  E-value=2.2e-06  Score=70.09  Aligned_cols=188  Identities=14%  Similarity=0.228  Sum_probs=117.3

Q ss_pred             cCCCeEEEEeCCCeEEEEECCCCc--eEEEEecCCC---CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecC-C
Q psy15421        152 LDDNQIVTSSGDMSCALWDIETGQ--QCASFIGHTG---DVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG-H  225 (340)
Q Consensus       152 ~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~---~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~-h  225 (340)
                      .+++++++.-.|..|.|=..+..-  .+.+.....+   .=..++|+||+.+++.+...|+|+++|+.... ...+++ +
T Consensus         6 ~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~   84 (282)
T PF15492_consen    6 SSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAM   84 (282)
T ss_pred             cCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCccc
Confidence            356667777777777766554321  1122222222   24579999999999999999999999986433 333322 1


Q ss_pred             ------CCCeEEEEEecC------CCEEEEEeCCCcEEEEeCc-----CCcEEEEeec-CCcccceEEEEEcCCCcEEEE
Q psy15421        226 ------ESDINAVTFFPN------GWAFATGSDDATCRLFDIR-----ADQELAMYSH-DNIICGITSVAFSRSGRLLLA  287 (340)
Q Consensus       226 ------~~~v~~v~~~~~------~~~l~s~s~d~~i~iwd~~-----~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~  287 (340)
                            ...|..+.|.+.      ...|+.-..+|.++=|-+.     ..+....+.. .....+|+++.|+|..++|++
T Consensus        85 ~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlV  164 (282)
T PF15492_consen   85 SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLV  164 (282)
T ss_pred             ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEE
Confidence                  235666666542      2246666677777766542     1222333322 223457999999999888887


Q ss_pred             EeCC-C----------cEEEEeCCCceeee--------------------------ee---ccCCcceEEEEECCCCCEE
Q psy15421        288 GYDD-F----------NCNVWDSMKTERAG--------------------------IL---AGHDNRVSCLGVTEDGMAV  327 (340)
Q Consensus       288 g~~d-~----------~i~iw~~~~~~~~~--------------------------~~---~~h~~~i~~~~~s~d~~~l  327 (340)
                      |+.. .          -+..|-+.+..+..                          .+   ......|..++.||||+.|
T Consensus       165 gG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~L  244 (282)
T PF15492_consen  165 GGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLL  244 (282)
T ss_pred             eccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEE
Confidence            6532 1          24455432211100                          01   1235678999999999999


Q ss_pred             EEeeCCCcEEecC
Q psy15421        328 ATGSWDSFLRIWN  340 (340)
Q Consensus       328 ~s~s~D~~i~iW~  340 (340)
                      |+...+|.|.+|+
T Consensus       245 a~ih~sG~lsLW~  257 (282)
T PF15492_consen  245 ACIHFSGSLSLWE  257 (282)
T ss_pred             EEEEcCCeEEEEe
Confidence            9999999999995

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.90  E-value=1.9e-05  Score=66.21  Aligned_cols=217  Identities=19%  Similarity=0.232  Sum_probs=135.5

Q ss_pred             EEEEcC-CCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEEC-CCCCEEEEEeCCCeEEEEEccCCCCceEEEE
Q psy15421         60 AMHWGS-DSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYA-PSGSFVACGGLDNICSIYSLKTREGNVRVSR  137 (340)
Q Consensus        60 ~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~-~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~  137 (340)
                      +..|.+ ++.++++--..+.|..|+..++.... +....  ...+++. +++.+++ +...+. .++|..++  ......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v-~~~~~~-~~~d~~~g--~~~~~~   76 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYV-ADSGGI-AVVDPDTG--KVTVLA   76 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEE-EETTCE-EEEETTTT--EEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEE-EEcCce-EEEecCCC--cEEEEe
Confidence            567887 67777777788999999988765432 33222  5666777 6655554 455554 45577654  333333


Q ss_pred             eec--C-CCcceEEEEEcCCCeEE-EEeCC--------CeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEE-EEeC
Q psy15421        138 ELP--G-HTGYLSCCRFLDDNQIV-TSSGD--------MSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV-SGAC  204 (340)
Q Consensus       138 ~~~--~-~~~~v~~~~~~~~~~l~-~~~~d--------~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-sg~~  204 (340)
                      ..+  . .....+.+.+.+++.+. +....        +.+..++.. ++. ..+...-...+.++|+|+++.++ +-+.
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcchheeecccc
Confidence            332  1 23445566776766544 43332        456677776 443 33333345678999999998665 6677


Q ss_pred             CCcEEEEECCCCee----ee---EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEE
Q psy15421        205 DASAKLWDIRDGSC----KQ---TFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVA  277 (340)
Q Consensus       205 dg~i~~wd~~~~~~----~~---~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  277 (340)
                      .+.|..+++.....    ..   .+....+..-.++++++|..+++....+.|.++|.. ++.+..+....  ..+++++
T Consensus       155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--~~~t~~~  231 (246)
T PF08450_consen  155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--PRPTNCA  231 (246)
T ss_dssp             TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS--SSEEEEE
T ss_pred             cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC--CCEEEEE
Confidence            89999998853221    12   222222347789999999999988889999999987 66666555442  2588999


Q ss_pred             E-cCCCcEEEEE
Q psy15421        278 F-SRSGRLLLAG  288 (340)
Q Consensus       278 ~-s~~~~~l~~g  288 (340)
                      | -|+.+.|.+-
T Consensus       232 fgg~~~~~L~vT  243 (246)
T PF08450_consen  232 FGGPDGKTLYVT  243 (246)
T ss_dssp             EESTTSSEEEEE
T ss_pred             EECCCCCEEEEE
Confidence            9 4676666543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832|consensus

Probab=98.89  E-value=1.9e-09  Score=99.50  Aligned_cols=261  Identities=15%  Similarity=0.235  Sum_probs=174.6

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC-C-eEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD-N-ICSI  123 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d-~-~v~i  123 (340)
                      +.-++|+.|...-+|++|+.+.+.|+.|+..|.|+++++.+|........|+++|+-+.-+.+|..+++.+.- . -..+
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            4457789999999999999999999999999999999999999999999999999999999999877665433 3 3578


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEcCCCe-EEEEeCCCeEEEEECCCCceEEEEec----CCCCeEEEEEcCCCCE
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSSGDMSCALWDIETGQQCASFIG----HTGDVMSLSLAPDMRT  198 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~  198 (340)
                      |++....+ .+  +++.    .-.++.|++..+ -+.|+......+||++++..+.++..    ....-++..|+|+.++
T Consensus      1172 W~~~s~~~-~~--Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1172 WDASSTGG-PR--HSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             hccccccC-cc--cccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence            98765221 11  1111    123445554432 22344446788999999887666332    2233467889999887


Q ss_pred             EEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEE
Q psy15421        199 FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAF  278 (340)
Q Consensus       199 ~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  278 (340)
                      ++   .||  .+||.+..+.++.|...... -.-.|+|.|..++.-+.     |||+++.+.+.....-.    -..+.|
T Consensus      1245 Il---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld----qc~VtF 1309 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD----QCAVTF 1309 (1516)
T ss_pred             Ee---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc----ceEEEe
Confidence            76   344  47999987777666544322 23468999998887764     89999877665433211    246788


Q ss_pred             cCCCcEEEEEe------CC-----------CcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEE
Q psy15421        279 SRSGRLLLAGY------DD-----------FNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVAT  329 (340)
Q Consensus       279 s~~~~~l~~g~------~d-----------~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s  329 (340)
                      +..|..+...-      +|           ...+-|+......+.++.. ..+|..++-+|..++|..
T Consensus      1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l~v 1376 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFLGV 1376 (1516)
T ss_pred             ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCccceEEE
Confidence            88777655432      11           1123344444444555532 456666777776666653

>KOG0882|consensus

Probab=98.88  E-value=2.5e-08  Score=85.70  Aligned_cols=249  Identities=16%  Similarity=0.136  Sum_probs=166.8

Q ss_pred             ccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC---eeEEeeCCCCcEEEEEECCCCCEEEEEeC-CCeEEEEEccCC
Q psy15421         54 HLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN---KVHAIPLRSSWVMTCAYAPSGSFVACGGL-DNICSIYSLKTR  129 (340)
Q Consensus        54 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~i~~v~~~~~~~~l~~~~~-d~~v~i~~~~~~  129 (340)
                      |++.|+.+.-+ ..+++++++.||.++.|--....   -+..+..|...|.+++.+-++..+.+.+. |..++++|+..-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            77777777543 45689999999999999643211   22334566677888888999999999777 999999998653


Q ss_pred             CCc-eEEEEeecCCCcceEEEEEcCCCe--EEEE--eCCCeEEEEECCCCc--eEEEEecCCCCeEEEEEcCCCCEEEEE
Q psy15421        130 EGN-VRVSRELPGHTGYLSCCRFLDDNQ--IVTS--SGDMSCALWDIETGQ--QCASFIGHTGDVMSLSLAPDMRTFVSG  202 (340)
Q Consensus       130 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~--l~~~--~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~sg  202 (340)
                      +-. ......+|   +.+.+. ..++..  +++.  -.++.+.++|-....  ....-.-|..+|.++.+.|.+..+++.
T Consensus        87 DminmiKL~~lP---g~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi  162 (558)
T KOG0882|consen   87 DMINMIKLVDLP---GFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI  162 (558)
T ss_pred             chhhhcccccCC---CceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence            211 11111222   222221 222211  3333  347889999976543  222333489999999999999999999


Q ss_pred             eCCCcEEEEECCC------Ceeee---------EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeec-
Q psy15421        203 ACDASAKLWDIRD------GSCKQ---------TFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSH-  266 (340)
Q Consensus       203 ~~dg~i~~wd~~~------~~~~~---------~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-  266 (340)
                      ...|-|.-|....      .+...         .++.......++.|+|++..+++-+.|..|++++.++++.+..+.. 
T Consensus       163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~  242 (558)
T KOG0882|consen  163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEV  242 (558)
T ss_pred             cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhcc
Confidence            8899999998762      11111         1222345567999999999999999999999999887654322110 


Q ss_pred             -----------------------------CCc-ccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeee
Q psy15421        267 -----------------------------DNI-ICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGIL  308 (340)
Q Consensus       267 -----------------------------~~~-~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~  308 (340)
                                                   +.+ ...-+.+.|...|++|+-|+-=| |++.++.+......+
T Consensus       243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence                                         000 01135678999999999988776 888888777665543

>KOG2695|consensus

Probab=98.83  E-value=2.1e-08  Score=83.37  Aligned_cols=174  Identities=16%  Similarity=0.236  Sum_probs=122.6

Q ss_pred             EEEEEcCC--CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEE
Q psy15421         59 YAMHWGSD--SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVS  136 (340)
Q Consensus        59 ~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~  136 (340)
                      +.++|+-+  +-. ++.|.+..|-+-|++++-.. .+. ..+.|.+..|...++.+..|..+|.|..+|++.+.+.....
T Consensus       215 ~~CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~  291 (425)
T KOG2695|consen  215 WSCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC  291 (425)
T ss_pred             hhhhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc
Confidence            44466532  223 67788888889998877532 232 34567788888889999999999999999998763222222


Q ss_pred             EeecCCCcceEEEEEc--CCCeEEEEeCCCeEEEEECCCCce---EEEEecCCCCe--EEEEEcCCCCEEEEEeCCCcEE
Q psy15421        137 RELPGHTGYLSCCRFL--DDNQIVTSSGDMSCALWDIETGQQ---CASFIGHTGDV--MSLSLAPDMRTFVSGACDASAK  209 (340)
Q Consensus       137 ~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~~~sg~~dg~i~  209 (340)
                      ...--|.+.|+++...  ++..|++.+.+|.|++||++.-+.   +..+++|...-  .-+-+.+....+++++.|...|
T Consensus       292 a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytR  371 (425)
T KOG2695|consen  292 AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTR  371 (425)
T ss_pred             eEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEE
Confidence            2233577788777654  345688888899999999986555   88888886532  2233456677888999999999


Q ss_pred             EEECCCCeeeeEecCCC----CCeEEEEEe
Q psy15421        210 LWDIRDGSCKQTFPGHE----SDINAVTFF  235 (340)
Q Consensus       210 ~wd~~~~~~~~~~~~h~----~~v~~v~~~  235 (340)
                      +|.++.+.+..+++-..    ..+.+++|.
T Consensus       372 iWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  372 IWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             EEecccCceeeccCCCCccccccccceehh
Confidence            99999999888776332    234455554

>KOG4532|consensus

Probab=98.82  E-value=1e-06  Score=71.14  Aligned_cols=151  Identities=14%  Similarity=0.033  Sum_probs=103.0

Q ss_pred             eEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEE
Q psy15421         69 NLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSC  148 (340)
Q Consensus        69 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~  148 (340)
                      .+.-++.|+++++.++.-+.....+...+-...++.++++++++++.+....|..|.+..........+ ....+..-.+
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~-~a~t~D~gF~  208 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY-EAPTSDHGFY  208 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE-ecccCCCcee
Confidence            355678899999988765443333322223377889999999999999999999999976443322212 2222222334


Q ss_pred             EEEcC-CCeEEEEeCCCeEEEEECCCCceEE-----EEecCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeeee
Q psy15421        149 CRFLD-DNQIVTSSGDMSCALWDIETGQQCA-----SFIGHTGDVMSLSLAPDMR--TFVSGACDASAKLWDIRDGSCKQ  220 (340)
Q Consensus       149 ~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~--~~~sg~~dg~i~~wd~~~~~~~~  220 (340)
                      ..|+. +..++.+..||++.|||++......     .-..|.+.+..+.|+|-+.  +|...-.-+.+.+.|++++...+
T Consensus       209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence            45554 4578999999999999998754322     1234888999999998553  44455567889999999886544

>KOG2695|consensus

Probab=98.81  E-value=2.2e-08  Score=83.25  Aligned_cols=161  Identities=16%  Similarity=0.242  Sum_probs=118.6

Q ss_pred             EEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----eeeeEecCCCCCeEE
Q psy15421        157 IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG-----SCKQTFPGHESDINA  231 (340)
Q Consensus       157 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~-----~~~~~~~~h~~~v~~  231 (340)
                      -++.+.+..+-+-|+++|-.  ..+...+.|.++.|...++++..|+..|.|..+|++..     .+...+ -|.+.|++
T Consensus       227 hfs~G~sqqv~L~nvetg~~--qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvts  303 (425)
T KOG2695|consen  227 HFSVGLSQQVLLTNVETGHQ--QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTS  303 (425)
T ss_pred             eecccccceeEEEEeecccc--cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhh
Confidence            35667788899999988743  22336678999999988899999999999999999865     223333 38888998


Q ss_pred             EEEec-CCCEEEEEeCCCcEEEEeCcCCcE---EEEee-cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeee
Q psy15421        232 VTFFP-NGWAFATGSDDATCRLFDIRADQE---LAMYS-HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAG  306 (340)
Q Consensus       232 v~~~~-~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~-~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~  306 (340)
                      +..-. ++.+|.+.+-+|.|++||.+-.+.   +.++. |.+... -.-+...+....++++++|.-.|||.+..+..+.
T Consensus       304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a-~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~  382 (425)
T KOG2695|consen  304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA-YLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC  382 (425)
T ss_pred             hhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc-ccccccccccceEEEccCeeEEEEEecccCceee
Confidence            87766 678999999999999999985554   55543 332221 2234556778889999999999999999888777


Q ss_pred             eeccC----CcceEEEEEC
Q psy15421        307 ILAGH----DNRVSCLGVT  321 (340)
Q Consensus       307 ~~~~h----~~~i~~~~~s  321 (340)
                      ++..-    +..+.+++|.
T Consensus       383 tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  383 TIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             ccCCCCccccccccceehh
Confidence            65432    3356667664

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.81  E-value=5.2e-06  Score=74.80  Aligned_cols=261  Identities=11%  Similarity=0.055  Sum_probs=147.7

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCC--cEE-----EEEECC--CCCEEEEEeCCCeEEEEEccCCCCceEEE
Q psy15421         66 DSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSS--WVM-----TCAYAP--SGSFVACGGLDNICSIYSLKTREGNVRVS  136 (340)
Q Consensus        66 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~i~-----~v~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~~  136 (340)
                      .+..++.++.++.+.-+|..+++.+........  ...     .+.-.|  .+..++.++.++.+..+|..+++...+  
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~--  145 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ--  145 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccc--
Confidence            355777888899999999999998766543321  000     000011  355667788889888888877654433  


Q ss_pred             EeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeE-EEEEcC--CCCEEEEEeCCCcEEEEEC
Q psy15421        137 RELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVM-SLSLAP--DMRTFVSGACDASAKLWDI  213 (340)
Q Consensus       137 ~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~~--~~~~~~sg~~dg~i~~wd~  213 (340)
                      ....+.   +.+.....++.++.+..++.+..+|..+|+.+..+........ ....+|  .+..++.+..+|.+..+|.
T Consensus       146 ~~~~~~---~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~  222 (394)
T PRK11138        146 TKVAGE---ALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLM  222 (394)
T ss_pred             ccCCCc---eecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEc
Confidence            222221   1111111356777788899999999999998776643211000 000111  1335667788999999999


Q ss_pred             CCCeeeeEecCCC----C---CeEEEEEec--CCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcE
Q psy15421        214 RDGSCKQTFPGHE----S---DINAVTFFP--NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRL  284 (340)
Q Consensus       214 ~~~~~~~~~~~h~----~---~v~~v~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
                      .+|+.+-..+...    .   ....+.-+|  .+..+..++.+|.+.-+|..+++.+.......    ...+..  .+..
T Consensus       223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~~--~~~~  296 (394)
T PRK11138        223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS----VNDFAV--DGGR  296 (394)
T ss_pred             cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC----ccCcEE--ECCE
Confidence            9887543332100    0   011111122  23466667789999999999888776543221    111121  3556


Q ss_pred             EEEEeCCCcEEEEeCCCceeeeeeccCC-cceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        285 LLAGYDDFNCNVWDSMKTERAGILAGHD-NRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       285 l~~g~~d~~i~iw~~~~~~~~~~~~~h~-~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      +..++.++.+..+|..+++.+=....-. ....+...  .+.+|+.++.||.+.+.
T Consensus       297 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~l  350 (394)
T PRK11138        297 IYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWI  350 (394)
T ss_pred             EEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEE
Confidence            6777788889999887776432211100 11111111  13356666777776654

>KOG1275|consensus

Probab=98.81  E-value=2.2e-07  Score=86.52  Aligned_cols=178  Identities=17%  Similarity=0.227  Sum_probs=130.4

Q ss_pred             CCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEE
Q psy15421        154 DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVT  233 (340)
Q Consensus       154 ~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~  233 (340)
                      ...++-|+-...+..+|+++.+..+....-.+.+.-|  ..+++++.+|...|+|-+-|.++.+.++++..|.+.|.++.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence            3456666667778889998877665544333344444  44678999999999999999999999999999999986655


Q ss_pred             EecCCCEEEEEeC---------CCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCC-CcEEEEEeCCCcEEEEe---CC
Q psy15421        234 FFPNGWAFATGSD---------DATCRLFDIRADQELAMYSHDNIICGITSVAFSRS-GRLLLAGYDDFNCNVWD---SM  300 (340)
Q Consensus       234 ~~~~~~~l~s~s~---------d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~g~~d~~i~iw~---~~  300 (340)
                      .  .|+.|+++|.         |..|++||++..+.+.-..   ......-+.|+|. ...+++.+..|...+-|   +.
T Consensus       225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~---~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls  299 (1118)
T KOG1275|consen  225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ---FPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS  299 (1118)
T ss_pred             c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc---cccCchhhhhcccccceEEEEecccceeeccccccC
Confidence            4  5778998876         5567999998765544322   1223456788886 45778888899998888   32


Q ss_pred             Cceeeeeec--cCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        301 KTERAGILA--GHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       301 ~~~~~~~~~--~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      +. ....+.  ....-+..+.+|+.|+.|+-|-.+|.|.+|
T Consensus       300 NP-~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~w  339 (1118)
T KOG1275|consen  300 NP-PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLW  339 (1118)
T ss_pred             CC-ccceeEEccCCCcceeEEecCCCceEEEecccCcEeee
Confidence            22 122222  233458999999999999999999999999

>KOG0309|consensus

Probab=98.80  E-value=4.1e-08  Score=89.22  Aligned_cols=206  Identities=19%  Similarity=0.277  Sum_probs=138.2

Q ss_pred             EEecCccCcEEEEEEcCCCC-eEEEEeCCCeEEEEeCCCCCe-eEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         49 RTLRGHLAKIYAMHWGSDSR-NLVSASQDGKLIVWDSYTTNK-VHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      ..+.||...|+++.|+|..+ .+++++-|-.+..||...... ..........-..|.|+-....+.+.+..+.+++||.
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~  187 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL  187 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence            45789999999999998764 688999999999999876543 3344444444567788865545555677788999999


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcC--CCeEEEEeCCCeEEEEECCCCceE-EEEecCCCCeEEEEEcCCCCEEEE--
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLD--DNQIVTSSGDMSCALWDIETGQQC-ASFIGHTGDVMSLSLAPDMRTFVS--  201 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~s--  201 (340)
                      +.+..   +...+.+|...+..+.|..  .+.+++++.|++|+.||-...... ........++.--++.|-+...++  
T Consensus       188 r~gs~---pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp  264 (1081)
T KOG0309|consen  188 RKGST---PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMP  264 (1081)
T ss_pred             cCCCc---ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecc
Confidence            87653   3455667888888877754  356889999999999997653221 122223345555555554432221  


Q ss_pred             --E-------eCCCcEEEEECCC-CeeeeEecCCCCCeEEEEEecC----------CCEEEEEeCCCcEEEEeCcC
Q psy15421        202 --G-------ACDASAKLWDIRD-GSCKQTFPGHESDINAVTFFPN----------GWAFATGSDDATCRLFDIRA  257 (340)
Q Consensus       202 --g-------~~dg~i~~wd~~~-~~~~~~~~~h~~~v~~v~~~~~----------~~~l~s~s~d~~i~iwd~~~  257 (340)
                        |       -.+..-..|+..+ .+.+..|.||...|...-|...          .-.|+|-|.|.++++|-+.+
T Consensus       265 ~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  265 MVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence              1       1222233333322 3567889999988765555432          23699999999999997653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.78  E-value=7.2e-06  Score=68.36  Aligned_cols=192  Identities=17%  Similarity=0.126  Sum_probs=118.3

Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEE-eecCCC
Q psy15421         65 SDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSR-ELPGHT  143 (340)
Q Consensus        65 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~~~  143 (340)
                      +++..+++++.++.|+.||..+++.+........ +.... ...+..++.+..++.+..+|..+++....... ..+...
T Consensus        34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~  111 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG  111 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred             EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence            3566788889999999999999998877665322 11111 22455666667888888888766654333111 111111


Q ss_pred             cceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCC----------eEEEEEcCCCCEEEEEeCCCc-EEEEE
Q psy15421        144 GYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGD----------VMSLSLAPDMRTFVSGACDAS-AKLWD  212 (340)
Q Consensus       144 ~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~~sg~~dg~-i~~wd  212 (340)
                      ..........++.++.+..++.+..+|+++|+.+.........          ...-....++ .++.++.++. +.+ |
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d  189 (238)
T PF13360_consen  112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-D  189 (238)
T ss_dssp             TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-E
T ss_pred             cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-E
Confidence            1111111112667888888999999999999988777654322          1122222234 6666777775 556 9


Q ss_pred             CCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEE
Q psy15421        213 IRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAM  263 (340)
Q Consensus       213 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  263 (340)
                      +++++.+-...  ...+..+ ..+.+..++.++.++.+..||.++++.+..
T Consensus       190 ~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  190 LATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             TTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            99998553322  2222221 345667788777999999999999887653

...

>KOG4714|consensus

Probab=98.77  E-value=6.1e-08  Score=77.65  Aligned_cols=163  Identities=13%  Similarity=0.165  Sum_probs=95.5

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCee-EEeeCCCCcEEEEEECCCCCEEEEEeC-----CCeEE
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKV-HAIPLRSSWVMTCAYAPSGSFVACGGL-----DNICS  122 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~i~~v~~~~~~~~l~~~~~-----d~~v~  122 (340)
                      +++.-|+++=.+-+-+-.++.++++..||.+.+.+...-..+ ..++.......+..+-..++++.+++.     -+..+
T Consensus        83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~  162 (319)
T KOG4714|consen   83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY  162 (319)
T ss_pred             eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence            344444433222223344667999999999999987541111 111111111122233334555554432     12345


Q ss_pred             EEEccCCCCceEEEEeecCCCcceEEEEEcC--CCeEEEEeCCCeEEEEECCCCce-EEEEecCCCCeEEEEEcC-CCCE
Q psy15421        123 IYSLKTREGNVRVSRELPGHTGYLSCCRFLD--DNQIVTSSGDMSCALWDIETGQQ-CASFIGHTGDVMSLSLAP-DMRT  198 (340)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~  198 (340)
                      .|+++...........    -..|.+++-++  +..+++|+.||.+.+||.+.... ...+..|+.+++.+-|+| +...
T Consensus       163 a~~~~p~~t~~~~~~~----~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~  238 (319)
T KOG4714|consen  163 ANTLDPIKTLIPSKKA----LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH  238 (319)
T ss_pred             eecccccccccccccc----cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence            6665443211111111    12255555444  34577788899999999987643 344567999999999999 5678


Q ss_pred             EEEEeCCCcEEEEECCC
Q psy15421        199 FVSGACDASAKLWDIRD  215 (340)
Q Consensus       199 ~~sg~~dg~i~~wd~~~  215 (340)
                      |++++.||.+-.||..+
T Consensus       239 Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  239 LFTCSEDGSLWHWDAST  255 (319)
T ss_pred             eeEecCCCcEEEEcCCC
Confidence            99999999999999763

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.74  E-value=2.1e-05  Score=71.00  Aligned_cols=190  Identities=12%  Similarity=0.089  Sum_probs=110.3

Q ss_pred             cEEEEEEcCCCCe-EEEEeC---CCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEE-EeCCCe--EEEEEccCC
Q psy15421         57 KIYAMHWGSDSRN-LVSASQ---DGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVAC-GGLDNI--CSIYSLKTR  129 (340)
Q Consensus        57 ~v~~~~~s~~~~~-l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~-~~~d~~--v~i~~~~~~  129 (340)
                      .+..-.|+||++. ++-.+.   +..|.++|+.+++...... .........|+|||+.++. .+.++.  +.++++..+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            7788999999985 554333   3568888998876544333 3444556789999987654 443444  444454433


Q ss_pred             CCceEEEEeecCCCcceEEEEEcCCC-eEEEEeC-CC--eEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        130 EGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSG-DM--SCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       130 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                        ......   .+........|++++ .++..+. .+  .|.+.|+.+++....... ...  ...|+|+++.++-.+..
T Consensus       268 --~~~~LT---~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        268 --TLTQIT---NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRE  339 (419)
T ss_pred             --cEEEcc---cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcC
Confidence              222221   222212223577766 4544432 22  688888887765333221 111  24899999987755443


Q ss_pred             ---------CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCC-C--cEEEEeCcC
Q psy15421        206 ---------ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDD-A--TCRLFDIRA  257 (340)
Q Consensus       206 ---------g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d-~--~i~iwd~~~  257 (340)
                               ..|.+.|+..+... .+... .......|+|||+.++-.+.+ +  .+.+.++..
T Consensus       340 ~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        340 TNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence                     36778888877643 33322 223357899999977655443 2  244555543

>KOG1912|consensus

Probab=98.73  E-value=4.1e-06  Score=77.03  Aligned_cols=236  Identities=15%  Similarity=0.148  Sum_probs=162.0

Q ss_pred             EEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCC------------CEEEEEeCCCeEEEEE
Q psy15421         58 IYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSG------------SFVACGGLDNICSIYS  125 (340)
Q Consensus        58 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~------------~~l~~~~~d~~v~i~~  125 (340)
                      -.++.|+|.| +|+=| .-..|.+-|..+.+.+..+..|+..|..|.|.|-.            -.+|++...|.|.+||
T Consensus        18 ~~A~Dw~~~G-LiAyg-shslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYG-SHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccCccc-eEEEe-cCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            4678888876 44444 44578999999999999999999999999998731            2577888889999999


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEc---CCC--eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcC-CCCEE
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFL---DDN--QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAP-DMRTF  199 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~  199 (340)
                      ...+..    ...+..|...+..++|.   ++.  .|++-.+..++.+|+..+|+.+.....-.....|+.+.| |.+.+
T Consensus        96 ~~~~s~----~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~  171 (1062)
T KOG1912|consen   96 FVLASV----INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHF  171 (1062)
T ss_pred             ehhhhh----hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceE
Confidence            877542    23445566666666663   333  466778889999999999998877766556677888888 55666


Q ss_pred             EEEeCCCcEEEEECCC-------CeeeeEecCCCC----------------C---------eEEEEEecCCCEEEEEeCC
Q psy15421        200 VSGACDASAKLWDIRD-------GSCKQTFPGHES----------------D---------INAVTFFPNGWAFATGSDD  247 (340)
Q Consensus       200 ~sg~~dg~i~~wd~~~-------~~~~~~~~~h~~----------------~---------v~~v~~~~~~~~l~s~s~d  247 (340)
                      ..-+..|.+.+-+.--       ++..+.-..|..                .         ...++|+|.-+.++-....
T Consensus       172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p  251 (1062)
T KOG1912|consen  172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP  251 (1062)
T ss_pred             EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence            6666677777665421       122221112221                0         1135667765544444556


Q ss_pred             CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCC--cEEEEEeCCCcEEEEeCCC
Q psy15421        248 ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSG--RLLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       248 ~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~g~~d~~i~iw~~~~  301 (340)
                      ..+.++|++-...+.....+..  .+.-+.+-|++  ..|.+.-.||.+.+|-.+.
T Consensus       252 rellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  252 RELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             cceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            7899999988777776654432  24456666665  4799999999999997543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.71  E-value=3.7e-05  Score=69.48  Aligned_cols=179  Identities=13%  Similarity=0.060  Sum_probs=106.1

Q ss_pred             cEEEEEECCCCCE-EEEEeCC---CeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEE-Ee--CCCeEEEEE
Q psy15421         99 WVMTCAYAPSGSF-VACGGLD---NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVT-SS--GDMSCALWD  170 (340)
Q Consensus        99 ~i~~v~~~~~~~~-l~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~-~~--~d~~v~iwd  170 (340)
                      ....-.|+|||+. ++..+.+   ..|.++++.+++  ......   ..+......|++++ .++. .+  ++..|.++|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~--~~~lt~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  263 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK--KEKIAS---SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD  263 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc--EEEEec---CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence            5677899999984 5544433   346666765443  222222   23334445577765 4433 32  245688888


Q ss_pred             CCCCceEEEEecCCCCeEEEEEcCCCCEEEEEe-CCC--cEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCC
Q psy15421        171 IETGQQCASFIGHTGDVMSLSLAPDMRTFVSGA-CDA--SAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDD  247 (340)
Q Consensus       171 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~-~dg--~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d  247 (340)
                      +.+++. ..+..+........|+||++.++-.+ ..+  .|.+.|+..++..+.... ...  ...|+|+|+.++-.+..
T Consensus       264 l~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        264 TNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRE  339 (419)
T ss_pred             CCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcC
Confidence            877753 44444443344567999998776544 333  677778887765333221 111  24899999988766554


Q ss_pred             ---------CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeC
Q psy15421        248 ---------ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYD  290 (340)
Q Consensus       248 ---------~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~  290 (340)
                               ..|.+.|+.++...... ....   -....|+|||+.++....
T Consensus       340 ~~~~~~~~~~~I~v~d~~~g~~~~LT-~~~~---~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        340 TNNEFGKNTFNLYLISTNSDYIRRLT-ANGV---NQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             CCcccCCCCcEEEEEECCCCCeEECC-CCCC---cCCeEECCCCCEEEEEEc
Confidence                     25778887766543222 2211   224789999998876554

>KOG1920|consensus

Probab=98.70  E-value=1.6e-05  Score=76.82  Aligned_cols=233  Identities=13%  Similarity=0.139  Sum_probs=139.3

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEE
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV  135 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  135 (340)
                      +.|.++.|..+++-++.+..+|.|.+-|.++..... ...-...|.+.+|+||+..++.....+++.+-...- +    +
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f-~----~  142 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF-E----P  142 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc-c----c
Confidence            689999999999999999999999999887765432 223346689999999999999888888765543210 0    0


Q ss_pred             EEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCce-----EE--EEe---cCCCCeEEEEEcCCCCEEEE----
Q psy15421        136 SRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQ-----CA--SFI---GHTGDVMSLSLAPDMRTFVS----  201 (340)
Q Consensus       136 ~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-----~~--~~~---~~~~~v~~~~~~~~~~~~~s----  201 (340)
                      ...-+-+..      -.+.+..+.+++.+.=.-+....|+.     ..  .+.   ...+.=.++.|--||+++++    
T Consensus       143 i~E~~L~~d------~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~  216 (1265)
T KOG1920|consen  143 IAEKPLDAD------DERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE  216 (1265)
T ss_pred             hhccccccc------cccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence            000000000      00123344444443222222111111     00  000   11222346889899998886    


Q ss_pred             -EeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEe---CCCcEEEEeCcCCcEEEEe--ecCCcccceEE
Q psy15421        202 -GACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGS---DDATCRLFDIRADQELAMY--SHDNIICGITS  275 (340)
Q Consensus       202 -g~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s---~d~~i~iwd~~~~~~~~~~--~~~~~~~~i~~  275 (340)
                       ....+.|++||.+ |.+-..-....+--.+++|-|.|..+|+-.   +|..|.+|--+.... ..+  +.+.....+..
T Consensus       217 ~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h-g~f~l~~p~de~~ve~  294 (1265)
T KOG1920|consen  217 SETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH-GEFVLPFPLDEKEVEE  294 (1265)
T ss_pred             ccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc-cccccCCcccccchhe
Confidence             3333899999965 543222222233345799999999988753   355688886443221 111  11111223789


Q ss_pred             EEEcCCCcEEEE---EeCCCcEEEEeCCCc
Q psy15421        276 VAFSRSGRLLLA---GYDDFNCNVWDSMKT  302 (340)
Q Consensus       276 ~~~s~~~~~l~~---g~~d~~i~iw~~~~~  302 (340)
                      ++|+.++.+|++   ......|++|...+.
T Consensus       295 L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  295 LAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eeecCCCCceeeeecccccceEEEEEecCe
Confidence            999999999998   555666999987654

>KOG0882|consensus

Probab=98.69  E-value=1.2e-07  Score=81.67  Aligned_cols=197  Identities=14%  Similarity=0.093  Sum_probs=135.0

Q ss_pred             CCcceEEEEEcCCCeEEEEeCCCeEEEEECCC--C-ceEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCe
Q psy15421        142 HTGYLSCCRFLDDNQIVTSSGDMSCALWDIET--G-QQCASFIGHTGDVMSLSLAPDMRTFVSGAC-DASAKLWDIRDGS  217 (340)
Q Consensus       142 ~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~-dg~i~~wd~~~~~  217 (340)
                      |...+..+.....+.+++++-||.++.|--..  + +.+..+..|.+.+.+++.+.++.++.|++. |..+|++|+.+-.
T Consensus         8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D   87 (558)
T KOG0882|consen    8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD   87 (558)
T ss_pred             ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence            45555555555567889999999999997543  1 223445678888999999999999999887 9999999988755


Q ss_pred             eeeEec--CCCCCeEEEEEecCC---CEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCC
Q psy15421        218 CKQTFP--GHESDINAVTFFPNG---WAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDF  292 (340)
Q Consensus       218 ~~~~~~--~h~~~v~~v~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~  292 (340)
                      .+.-++  -..+.+.. ..+|..   ...++.-.++.+.++|-........+....+..+|.++.+.|.+..+++....|
T Consensus        88 minmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g  166 (558)
T KOG0882|consen   88 MINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG  166 (558)
T ss_pred             hhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence            432221  11122211 122221   233444567889999977544322233334456799999999999999999999


Q ss_pred             cEEEEeCCC-c---ee-e----------eeeccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        293 NCNVWDSMK-T---ER-A----------GILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       293 ~i~iw~~~~-~---~~-~----------~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      .|..|.... .   +. +          ..+........++.|+|+|..+.+-+.|..||+.
T Consensus       167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F  228 (558)
T KOG0882|consen  167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGF  228 (558)
T ss_pred             eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEE
Confidence            999998652 0   00 1          1122334567899999999999999999999875

>KOG1275|consensus

Probab=98.68  E-value=9e-07  Score=82.59  Aligned_cols=183  Identities=16%  Similarity=0.220  Sum_probs=126.9

Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeE
Q psy15421        109 GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVM  188 (340)
Q Consensus       109 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~  188 (340)
                      +..+.-|+....+..+|+++..    ..+...-..+.+.-++. ++..+.+|...|+|.+-|+++.+.+.++.+|.+.+.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~----e~r~~~v~a~~v~imR~-Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS  221 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEK----ETRTTNVSASGVTIMRY-NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS  221 (1118)
T ss_pred             Ccceeecchhhheeeeecccce----eeeeeeccCCceEEEEe-cCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence            4455666666666777776542    22222222223444443 345677888899999999999999999999999998


Q ss_pred             EEEEcCCCCEEEEEeC---------CCcEEEEECCCCeeeeEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCC
Q psy15421        189 SLSLAPDMRTFVSGAC---------DASAKLWDIRDGSCKQTFPGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRAD  258 (340)
Q Consensus       189 ~~~~~~~~~~~~sg~~---------dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~  258 (340)
                      .+..  .|+.+++++.         |.-|++||+|.-+.+.-++-+-++ .-+.|.|. ...++..+..|...+-|..+.
T Consensus       222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~l  298 (1118)
T KOG1275|consen  222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATL  298 (1118)
T ss_pred             eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeecccccc
Confidence            7766  4777877664         567899999987655544434333 34677775 567888999999999994321


Q ss_pred             -cE-EEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeC
Q psy15421        259 -QE-LAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       259 -~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~  299 (340)
                       .+ ...+........+.++.+++++..++.|..+|.|.+|--
T Consensus       299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence             11 222222222334899999999999999999999999973

>KOG2114|consensus

Probab=98.55  E-value=6.4e-05  Score=70.25  Aligned_cols=202  Identities=14%  Similarity=0.204  Sum_probs=131.3

Q ss_pred             EEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCC-CCEEEEEeCCC-----eEEEEEccCCCCce--
Q psy15421         62 HWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS-GSFVACGGLDN-----ICSIYSLKTREGNV--  133 (340)
Q Consensus        62 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~-~~~l~~~~~d~-----~v~i~~~~~~~~~~--  133 (340)
                      +|++.+..++-|+.||.|.+.|. .-+.+..++++...+...-+.-+ -.+|++.+.|+     .++||++...++.-  
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            35688889999999999988873 23334667766655322233333 46888877765     48999987543221  


Q ss_pred             EEE---E----eecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCC----CceEEEEecCCCCeEEEEEcCCCCEEEE
Q psy15421        134 RVS---R----ELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIET----GQQCASFIGHTGDVMSLSLAPDMRTFVS  201 (340)
Q Consensus       134 ~~~---~----~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~s  201 (340)
                      ...   +    ..+..+.++.++..+.+ ..++.|-.+|.|..+.-.-    +....-...-.++|+.+++..+++..+-
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            111   1    12223455666665544 5677888899999985321    1111112234568999999888876444


Q ss_pred             EeCCCcEEEEECCCCee-eeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEee
Q psy15421        202 GACDASAKLWDIRDGSC-KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS  265 (340)
Q Consensus       202 g~~dg~i~~wd~~~~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  265 (340)
                      ...-..|.+|.+....+ ...+..|+.+.+|.++++....|++++ +..+.+||....++-..+.
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            45567899999874432 445778888999999998665566665 4578999988666655554

>KOG2114|consensus

Probab=98.52  E-value=4.6e-05  Score=71.18  Aligned_cols=206  Identities=15%  Similarity=0.184  Sum_probs=127.2

Q ss_pred             EECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcc-eEEEEEcCC-CeEEEEeCCC-----eEEEEECCCC--
Q psy15421        104 AYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGY-LSCCRFLDD-NQIVTSSGDM-----SCALWDIETG--  174 (340)
Q Consensus       104 ~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~-~~l~~~~~d~-----~v~iwd~~~~--  174 (340)
                      .+++++..++.|+.+|.|.+.+-.     ....+.+.++... |..+...++ +.|++.+.|.     .+++|+++.-  
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-----~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~  104 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-----FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK  104 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-----ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence            478889999999999987666522     1232344444444 444444344 4566655543     5899998542  


Q ss_pred             ----ceE--EEEec-----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC---CCeeeeEe-cCCCCCeEEEEEecCCC
Q psy15421        175 ----QQC--ASFIG-----HTGDVMSLSLAPDMRTFVSGACDASAKLWDIR---DGSCKQTF-PGHESDINAVTFFPNGW  239 (340)
Q Consensus       175 ----~~~--~~~~~-----~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~---~~~~~~~~-~~h~~~v~~v~~~~~~~  239 (340)
                          +..  .++..     ...++.+++++.+-+.+++|-.+|.|..+.=.   ..-....+ ..-.++|+.+++..++.
T Consensus       105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~  184 (933)
T KOG2114|consen  105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK  184 (933)
T ss_pred             CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence                222  12333     24467899999998899999999999998421   11111122 12356899999998887


Q ss_pred             EEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeec-cCCcceE
Q psy15421        240 AFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA-GHDNRVS  316 (340)
Q Consensus       240 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~-~h~~~i~  316 (340)
                      ..+=...-..|.+|.+....+.. ....++..+++|..|++....+++++.. -+.+|+.....+-..+. ||...+.
T Consensus       185 s~lFv~Tt~~V~~y~l~gr~p~~-~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk~~~  260 (933)
T KOG2114|consen  185 SVLFVATTEQVMLYSLSGRTPSL-KVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEKKEML  260 (933)
T ss_pred             eeEEEEecceeEEEEecCCCcce-eeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCeEEEE
Confidence            62222234678999988544222 2244556678999999876645555554 48999876444333344 6654443

>KOG2066|consensus

Probab=98.48  E-value=1.1e-05  Score=74.71  Aligned_cols=167  Identities=14%  Similarity=0.148  Sum_probs=114.7

Q ss_pred             CCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEE
Q psy15421        154 DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVT  233 (340)
Q Consensus       154 ~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~  233 (340)
                      +..++.|+.+|.|.+++.....  .....|...      .-+|.+++|||.||+|.+-.+-+.+....+. ...++.+|+
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksia  119 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIA  119 (846)
T ss_pred             cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEE
Confidence            4567889999999999886542  344445443      5578999999999999999888777655554 346899999


Q ss_pred             EecC-----CCEEEEEeCCCcEEEEeCc---CCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceee
Q psy15421        234 FFPN-----GWAFATGSDDATCRLFDIR---ADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERA  305 (340)
Q Consensus       234 ~~~~-----~~~l~s~s~d~~i~iwd~~---~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~  305 (340)
                      ++|+     .+++++||.-| +.++.-+   ....+  ..+. ...+|.++.|.  |.++|=+.++| |++||..+...+
T Consensus       120 l~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--~l~~-~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l  192 (846)
T KOG2066|consen  120 LHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--VLSE-GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRL  192 (846)
T ss_pred             eccchhhhhhhheeecCcce-EEEehhhhhcCccce--eeec-CccceEEEEec--CcEEEEecCCC-cEEEecccccee
Confidence            9997     56899999888 7666432   11122  1222 23469999996  67999898888 999998887776


Q ss_pred             eeeccCCcc------eEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        306 GILAGHDNR------VSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       306 ~~~~~h~~~------i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      ..+..-...      -..+.|.++.+ |+-|-.| +|+|
T Consensus       193 ~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d-~v~i  229 (846)
T KOG2066|consen  193 TNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGD-SVKI  229 (846)
T ss_pred             eccCCCCCCCCcccCCCceEecCCCe-EEEecCC-eEEE
Confidence            655432222      23477777764 4444433 4443

>KOG1645|consensus

Probab=98.45  E-value=2.5e-05  Score=66.72  Aligned_cols=244  Identities=12%  Similarity=0.064  Sum_probs=135.0

Q ss_pred             EEecCccCcEEEEEEcCCCC-eEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCC-CCEEEEEeCCCeEEEEEc
Q psy15421         49 RTLRGHLAKIYAMHWGSDSR-NLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS-GSFVACGGLDNICSIYSL  126 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~-~~~l~~~~~d~~v~i~~~  126 (340)
                      ..+.+|...|.+++|+|..+ ++..++-+.+|+|.|+++...+.+...+ ..+.+++|.-| ..++++|...|.|.|||+
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~  265 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM  265 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence            34667788999999999887 6778899999999999998888887777 67889999865 567888889999999999


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEE-------cCCCeEEEEeCCCeEEEEECCCCc--eEEEE-ecCCCCeEEEEEcCCC
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRF-------LDDNQIVTSSGDMSCALWDIETGQ--QCASF-IGHTGDVMSLSLAPDM  196 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~-~~~~~~v~~~~~~~~~  196 (340)
                      +..++....... .-...+|..+.+       ..++.++....+  ...|+.....  ....+ .+..+.+.+++.++..
T Consensus       266 R~~~~~~~e~~a-~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~s  342 (463)
T KOG1645|consen  266 RQPEGPLMELVA-NVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVS  342 (463)
T ss_pred             cCCCchHhhhhh-hhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCcc
Confidence            887653211100 001112222222       122333333322  3345443211  11111 1234456666666655


Q ss_pred             CEEEEEeCC-------CcEE-EEECCCCeeeeEe-cCC-CCCe------EEEEEecCCCEE-EEEeCCCcEEEEeCcCCc
Q psy15421        197 RTFVSGACD-------ASAK-LWDIRDGSCKQTF-PGH-ESDI------NAVTFFPNGWAF-ATGSDDATCRLFDIRADQ  259 (340)
Q Consensus       197 ~~~~sg~~d-------g~i~-~wd~~~~~~~~~~-~~h-~~~v------~~v~~~~~~~~l-~s~s~d~~i~iwd~~~~~  259 (340)
                      +.++.....       ..|- --|...|..+..- .++ +++-      ..+.-.++.+++ ..|...+.+.+||..+..
T Consensus       343 nh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~e  422 (463)
T KOG1645|consen  343 NHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFE  422 (463)
T ss_pred             ceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhh
Confidence            544432221       0010 1122333332211 112 1110      111112344444 456667889999999887


Q ss_pred             EEEEeecCCcccceEEEEEcC-C-CcEEEEEeCCCcEEEEeCC
Q psy15421        260 ELAMYSHDNIICGITSVAFSR-S-GRLLLAGYDDFNCNVWDSM  300 (340)
Q Consensus       260 ~~~~~~~~~~~~~i~~~~~s~-~-~~~l~~g~~d~~i~iw~~~  300 (340)
                      .+..+....   +|..++... + +.+|++=. |..++||..+
T Consensus       423 vvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  423 VVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             eeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence            777665443   344444322 2 34555544 4468887644

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.43  E-value=0.0001  Score=66.34  Aligned_cols=73  Identities=16%  Similarity=0.200  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCC
Q psy15421        224 GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM  300 (340)
Q Consensus       224 ~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~  300 (340)
                      .....+.+.+++|+...++.|+.||+|.+||...+.....    .....++.++|||+|.++++|++.|.+.+||..
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~----ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA----KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee----eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            4677899999999999999999999999999875533222    112347889999999999999999999999953

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.42  E-value=0.0004  Score=64.19  Aligned_cols=167  Identities=17%  Similarity=0.137  Sum_probs=103.7

Q ss_pred             CCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEe--------------------------------------
Q psy15421        162 GDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGA--------------------------------------  203 (340)
Q Consensus       162 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~--------------------------------------  203 (340)
                      ..+.+.+.|..+.+....+.- .+..--++++|+++++++.+                                      
T Consensus       213 y~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~  291 (635)
T PRK02888        213 YRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFK  291 (635)
T ss_pred             eeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEE
Confidence            356677888887665544432 22344566677777666554                                      


Q ss_pred             --CCCcEEEEECCC----C-eeeeEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCcCCcEEE---------Eeec
Q psy15421        204 --CDASAKLWDIRD----G-SCKQTFPGHESDINAVTFFPNGWAFATGS-DDATCRLFDIRADQELA---------MYSH  266 (340)
Q Consensus       204 --~dg~i~~wd~~~----~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~---------~~~~  266 (340)
                        .++.|.+.|.++    + ..+..++ -......++++|||+++++++ .+.++.+.|+.+.+.+.         ....
T Consensus       292 ~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae  370 (635)
T PRK02888        292 TIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE  370 (635)
T ss_pred             EECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence              235577777776    2 3333333 344567899999999876554 58999999998644210         1111


Q ss_pred             CCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCC----------ceeeeeecc-----CCcceEEEEECCCCCEEEEe
Q psy15421        267 DNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK----------TERAGILAG-----HDNRVSCLGVTEDGMAVATG  330 (340)
Q Consensus       267 ~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~----------~~~~~~~~~-----h~~~i~~~~~s~d~~~l~s~  330 (340)
                      .....+..-.+|.++|+.+.+-.-|..|-.||+.+          .+.+..+.-     |......=.-.|||++|++.
T Consensus       371 vevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~  449 (635)
T PRK02888        371 PELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSL  449 (635)
T ss_pred             eccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEc
Confidence            22233456789999999888888999999999765          233333333     32222222336788888874

>KOG2066|consensus

Probab=98.40  E-value=5.1e-05  Score=70.37  Aligned_cols=141  Identities=17%  Similarity=0.233  Sum_probs=99.7

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCC-----CCEEEEEeCCCeEEEEEccCCCCceEEEEeec
Q psy15421         66 DSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS-----GSFVACGGLDNICSIYSLKTREGNVRVSRELP  140 (340)
Q Consensus        66 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~-----~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~  140 (340)
                      +|.+++|||.||+|.|-.+.+.+....+.- ..++.+|+++|+     .+.+++||.-| +.++.-+--+..  ....+.
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk--~~v~l~  157 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK--DSVVLS  157 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc--cceeee
Confidence            499999999999999999988877655543 467899999997     57889999888 666653321111  122344


Q ss_pred             CCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCC------CeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy15421        141 GHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTG------DVMSLSLAPDMRTFVSGACDASAKLWDIR  214 (340)
Q Consensus       141 ~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~sg~~dg~i~~wd~~  214 (340)
                      .-.++|.++.|.  +.+++-.+|--|++||..+++.+..+.....      ....+.|.++.+ ++.|- --+|++..++
T Consensus       158 ~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~  233 (846)
T KOG2066|consen  158 EGEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIK  233 (846)
T ss_pred             cCccceEEEEec--CcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEec-CCeEEEEEEe
Confidence            567789888884  4466777788899999999887776654322      234677877654 44444 3478888776

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.35  E-value=0.00051  Score=58.05  Aligned_cols=188  Identities=17%  Similarity=0.187  Sum_probs=115.3

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEe-----CCCeEEEEeCC-CCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC----
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSAS-----QDGKLIVWDSY-TTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD----  118 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~-----~d~~i~iwd~~-~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d----  118 (340)
                      +.|.||      -.|++||++|.+.=     ..|.|-|||.. +.+.+.++..+.--...+.+.|||..|+.+.-.    
T Consensus        50 RHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Th  123 (305)
T PF07433_consen   50 RHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETH  123 (305)
T ss_pred             CEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccC
Confidence            556777      56899999999874     45899999998 667778888777667778899999877765211    


Q ss_pred             ---CeEE-----------EEEccCCCCceEEEEeec--CCCcceEEEEEcCCCeEEEEeCC-C-------eEEEEECCCC
Q psy15421        119 ---NICS-----------IYSLKTREGNVRVSRELP--GHTGYLSCCRFLDDNQIVTSSGD-M-------SCALWDIETG  174 (340)
Q Consensus       119 ---~~v~-----------i~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~d-~-------~v~iwd~~~~  174 (340)
                         +..+           ..|..+  +...-+..++  -|...+..+.+..++.++.+... +       -+-+++.  +
T Consensus       124 pd~GR~kLNl~tM~psL~~ld~~s--G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g  199 (305)
T PF07433_consen  124 PDSGRAKLNLDTMQPSLVYLDARS--GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--G  199 (305)
T ss_pred             cccCceecChhhcCCceEEEecCC--CceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--C
Confidence               1111           112221  2222222332  24445555555555555544321 1       1223322  2


Q ss_pred             ceEEEE-------ecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeC
Q psy15421        175 QQCASF-------IGHTGDVMSLSLAPDMRTFVSGA-CDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSD  246 (340)
Q Consensus       175 ~~~~~~-------~~~~~~v~~~~~~~~~~~~~sg~-~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~  246 (340)
                      +....+       ......+-++++++++..+++.+ .-+.+.+||..+++.+....  -..+..++-.+++ +++|.+ 
T Consensus       200 ~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG-  275 (305)
T PF07433_consen  200 GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSG-  275 (305)
T ss_pred             CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCC-
Confidence            212111       12446788999999998776555 67889999999998876654  2356778777776 444444 


Q ss_pred             CCcE
Q psy15421        247 DATC  250 (340)
Q Consensus       247 d~~i  250 (340)
                      .|.+
T Consensus       276 ~G~~  279 (305)
T PF07433_consen  276 QGQL  279 (305)
T ss_pred             CccE
Confidence            4543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.31  E-value=0.0014  Score=60.86  Aligned_cols=195  Identities=16%  Similarity=0.147  Sum_probs=114.6

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCC------cEE--EEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEe
Q psy15421         67 SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSS------WVM--TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRE  138 (340)
Q Consensus        67 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~i~--~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~  138 (340)
                      +..+..++.++.|+-.|..+++.+........      .+.  .+.+. ++..++.++.++.+..+|..+++...+  ..
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~--~~  137 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWK--FG  137 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeee--ec
Confidence            44566778889999999999988766543322      000  00111 225677788899998888877654332  22


Q ss_pred             ecCCC--c-ceEE-EEEcCCCeEEEEe---------CCCeEEEEECCCCceEEEEecCCCC-------------------
Q psy15421        139 LPGHT--G-YLSC-CRFLDDNQIVTSS---------GDMSCALWDIETGQQCASFIGHTGD-------------------  186 (340)
Q Consensus       139 ~~~~~--~-~v~~-~~~~~~~~l~~~~---------~d~~v~iwd~~~~~~~~~~~~~~~~-------------------  186 (340)
                      ...+.  . .+.. -.. .++.++.++         .++.+..+|..+|+..-.+......                   
T Consensus       138 ~~~~~~~~~~i~ssP~v-~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~  216 (488)
T cd00216         138 NNDQVPPGYTMTGAPTI-VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG  216 (488)
T ss_pred             CCCCcCcceEecCCCEE-ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence            22220  0 0110 011 134444443         3678999999999887765432110                   


Q ss_pred             -e-EEEEEcCCCCEEEEEeCCC------------------cEEEEECCCCeeeeEecC--CCC---Ce-EEEEEe----c
Q psy15421        187 -V-MSLSLAPDMRTFVSGACDA------------------SAKLWDIRDGSCKQTFPG--HES---DI-NAVTFF----P  236 (340)
Q Consensus       187 -v-~~~~~~~~~~~~~sg~~dg------------------~i~~wd~~~~~~~~~~~~--h~~---~v-~~v~~~----~  236 (340)
                       + .+.++.+.+..++.++.++                  .|.-+|..+|+.+-.++.  |..   .. ....+.    -
T Consensus       217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~  296 (488)
T cd00216         217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK  296 (488)
T ss_pred             CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence             1 1234455566777777665                  788899999987655431  210   00 000111    1


Q ss_pred             CCC---EEEEEeCCCcEEEEeCcCCcEEEEee
Q psy15421        237 NGW---AFATGSDDATCRLFDIRADQELAMYS  265 (340)
Q Consensus       237 ~~~---~l~s~s~d~~i~iwd~~~~~~~~~~~  265 (340)
                      ++.   .++.++.+|.+.-.|.++++.+....
T Consensus       297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             CCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence            232   57788889999999999998887653

The alignment model contains an 8-bladed beta-propeller.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.31  E-value=8.4e-06  Score=73.16  Aligned_cols=88  Identities=20%  Similarity=0.342  Sum_probs=69.0

Q ss_pred             EEEECCCCceE---EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEE
Q psy15421        167 ALWDIETGQQC---ASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFAT  243 (340)
Q Consensus       167 ~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s  243 (340)
                      .+|+...++..   ..-......+.+++++|+...++.|+.||.|.+||...+...  +....-.++.++|+|+|..+++
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V  316 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVV  316 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEE
Confidence            36666544321   122357788999999999999999999999999998776432  2234456788999999999999


Q ss_pred             EeCCCcEEEEeCc
Q psy15421        244 GSDDATCRLFDIR  256 (340)
Q Consensus       244 ~s~d~~i~iwd~~  256 (340)
                      |+..|.+.+||+.
T Consensus       317 ~s~qGelQ~FD~A  329 (545)
T PF11768_consen  317 GSEQGELQCFDMA  329 (545)
T ss_pred             EcCCceEEEEEee
Confidence            9999999999975

>KOG1920|consensus

Probab=98.29  E-value=0.00053  Score=66.72  Aligned_cols=230  Identities=11%  Similarity=0.127  Sum_probs=127.5

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCe-EEEEeCCCeEEEEEC----C
Q psy15421         98 SWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSSGDMSCALWDI----E  172 (340)
Q Consensus        98 ~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~v~iwd~----~  172 (340)
                      ..|.++.|..+.+.+..+...|.+.+-|..+..  ..+   ...-...|.++.|++++. ++..+++.++.+-+-    -
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~ei---vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i  143 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLE--LEI---VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI  143 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccc--eee---eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence            468889999999999889999988888765432  111   122345688888988765 555666666655432    1


Q ss_pred             CCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eeeEecCCCCCeEEEEEecCCCEEEE-----EeC
Q psy15421        173 TGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS-CKQTFPGHESDINAVTFFPNGWAFAT-----GSD  246 (340)
Q Consensus       173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s-----~s~  246 (340)
                      ..+++..-....+....+-|-...+.| -|+ .|..+.-+..... .....+-+.. =++|.|..||.+||+     ...
T Consensus       144 ~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~~~-~~~IsWRgDg~~fAVs~~~~~~~  220 (1265)
T KOG1920|consen  144 AEKPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQIEQDDH-KTSISWRGDGEYFAVSFVESETG  220 (1265)
T ss_pred             hccccccccccccccceecccccceee-ecc-hhhhcccccccccccccchhhccC-CceEEEccCCcEEEEEEEeccCC
Confidence            111110000011122233332222111 111 1111111111000 0000111222 246899999999987     333


Q ss_pred             CCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEE---eCCCcEEEEeCCCceeee----eeccCCcceEEEE
Q psy15421        247 DATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAG---YDDFNCNVWDSMKTERAG----ILAGHDNRVSCLG  319 (340)
Q Consensus       247 d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g---~~d~~i~iw~~~~~~~~~----~~~~h~~~i~~~~  319 (340)
                      .+.|++||-. +..-..-...  ..-=.+++|-|.|..+++-   .+|..|.+|+. +|..-+    .+.....+|..++
T Consensus       221 ~RkirV~drE-g~Lns~se~~--~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~  296 (1265)
T KOG1920|consen  221 TRKIRVYDRE-GALNSTSEPV--EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELA  296 (1265)
T ss_pred             ceeEEEeccc-chhhcccCcc--cccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheee
Confidence            3889999976 3222111111  1113478999999999873   34567999984 443322    2333445599999


Q ss_pred             ECCCCCEEEE---eeCCCcEEec
Q psy15421        320 VTEDGMAVAT---GSWDSFLRIW  339 (340)
Q Consensus       320 ~s~d~~~l~s---~s~D~~i~iW  339 (340)
                      |..++..|+.   ......|++|
T Consensus       297 Wns~sdiLAv~~~~~e~~~v~lw  319 (1265)
T KOG1920|consen  297 WNSNSDILAVVTSNLENSLVQLW  319 (1265)
T ss_pred             ecCCCCceeeeecccccceEEEE
Confidence            9999998886   5556669998

>KOG1832|consensus

Probab=98.29  E-value=8.3e-07  Score=82.65  Aligned_cols=145  Identities=14%  Similarity=0.175  Sum_probs=111.2

Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCC--CcEEEEeCc
Q psy15421        179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDD--ATCRLFDIR  256 (340)
Q Consensus       179 ~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d--~~i~iwd~~  256 (340)
                      .+..|....+|++|+-+.++++.|+..|.|++++..+|.....+..|..+|+-+.-+.+|..+++.+.-  .-..+|++.
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence            455677889999999999999999999999999999999999999999999999988888876655443  246799987


Q ss_pred             C-CcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeee-cc---CCcceEEEEECCCCCEEEE
Q psy15421        257 A-DQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGIL-AG---HDNRVSCLGVTEDGMAVAT  329 (340)
Q Consensus       257 ~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~-~~---h~~~i~~~~~s~d~~~l~s  329 (340)
                      + ..+.+.|..      -.++.|+...+.-+.|+.--...+||..+..+..++ .+   ....=+++.|||+..+++-
T Consensus      1176 s~~~~~Hsf~e------d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1176 STGGPRHSFDE------DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred             cccCccccccc------cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence            4 334444422      347889887777677777677999999988776552 21   2223378999999887773

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.27  E-value=0.0018  Score=54.76  Aligned_cols=224  Identities=15%  Similarity=0.151  Sum_probs=133.2

Q ss_pred             cEEEEEEcCCCCe-EEEEeCCC-eEEEEeCCCCCeeEEeeCCCCcEE--EEEECCCCCEEEEEe-----CCCeEEEEEcc
Q psy15421         57 KIYAMHWGSDSRN-LVSASQDG-KLIVWDSYTTNKVHAIPLRSSWVM--TCAYAPSGSFVACGG-----LDNICSIYSLK  127 (340)
Q Consensus        57 ~v~~~~~s~~~~~-l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~i~--~v~~~~~~~~l~~~~-----~d~~v~i~~~~  127 (340)
                      ....++.+|.... ++.+=.-| -..+||..+++....+......-.  -..|++||++|++.-     ..|.|-|||..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            3456777785444 44443333 367889988888776654443322  346999999999863     34789999986


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEe------------------CCCeEEEEECCCCceEEEEe----cCC
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSS------------------GDMSCALWDIETGQQCASFI----GHT  184 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~------------------~d~~v~iwd~~~~~~~~~~~----~~~  184 (340)
                      .   ......+++.|..-=.-+.+.+++ .|+.+.                  .+-++.+.|..+|+.+....    -|.
T Consensus        86 ~---~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~  162 (305)
T PF07433_consen   86 R---GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ  162 (305)
T ss_pred             C---CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence            2   223444555443322223344554 444332                  22356677778888766532    266


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCc-------EEEEECCCCeeeeEec-------CCCCCeEEEEEecCCCEEEEEeC-CCc
Q psy15421        185 GDVMSLSLAPDMRTFVSGACDAS-------AKLWDIRDGSCKQTFP-------GHESDINAVTFFPNGWAFATGSD-DAT  249 (340)
Q Consensus       185 ~~v~~~~~~~~~~~~~sg~~dg~-------i~~wd~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~l~s~s~-d~~  249 (340)
                      -++..+++.+++..++..-..|.       |-+++  .+.....+.       .-...+-+|++++++..++..+. -+.
T Consensus       163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~  240 (305)
T PF07433_consen  163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR  240 (305)
T ss_pred             cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence            78999999998876654333222       22222  222222221       23356889999999887755554 567


Q ss_pred             EEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeC
Q psy15421        250 CRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYD  290 (340)
Q Consensus       250 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~  290 (340)
                      +.+||..+++.+......    .+..++-.+++ ++++.+.
T Consensus       241 ~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  241 VAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             EEEEECCCCCEeeccccC----ceeeeeecCCc-eEEeCCC
Confidence            899999988776654332    24556666666 5554433

>KOG3617|consensus

Probab=98.23  E-value=3.9e-05  Score=71.61  Aligned_cols=258  Identities=13%  Similarity=0.164  Sum_probs=142.4

Q ss_pred             EEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEE
Q psy15421         58 IYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSR  137 (340)
Q Consensus        58 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~  137 (340)
                      +++++|+|..-.|+.|-.-|.+.+|+..+.+.-.....|..+|..+.|||+|..++++..-|.+.+|.....+ .+.. .
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g-~~q~-~  139 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG-EIQT-S  139 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc-cccc-c
Confidence            5689999999999999999999999987766544455788899999999999999999999999999876432 1111 1


Q ss_pred             eecCCC--cceEEEEE--cCCC----eE--EEEeC-CCeEE-EEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        138 ELPGHT--GYLSCCRF--LDDN----QI--VTSSG-DMSCA-LWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       138 ~~~~~~--~~v~~~~~--~~~~----~l--~~~~~-d~~v~-iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                      .+..|.  ..+..++|  +.++    ++  ++.++ +..+- .++.+....... ..|.+       .|++..|+.++.+
T Consensus       140 ~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs-~~ksg-------v~~g~~F~~~~~~  211 (1416)
T KOG3617|consen  140 NIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERS-DEKSG-------VPKGTEFLFAGKS  211 (1416)
T ss_pred             hhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcc-ccccC-------CCCCcEEEEEcCC
Confidence            111221  22333333  2221    11  12222 22222 222221111111 11211       4778888889999


Q ss_pred             CcEEEEECCCCeeeeEec----------CCCCCeEEEE--------Eec-CCCE------EE---EEeCCCcEEEEeCcC
Q psy15421        206 ASAKLWDIRDGSCKQTFP----------GHESDINAVT--------FFP-NGWA------FA---TGSDDATCRLFDIRA  257 (340)
Q Consensus       206 g~i~~wd~~~~~~~~~~~----------~h~~~v~~v~--------~~~-~~~~------l~---s~s~d~~i~iwd~~~  257 (340)
                      |+|..-| +.|++....+          +....|.++.        +.| .|..      =+   .|+..|.|-.=.- .
T Consensus       212 GtVyyvd-q~g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEs-s  289 (1416)
T KOG3617|consen  212 GTVYYVD-QNGRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSES-S  289 (1416)
T ss_pred             ceEEEEc-CCCcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccc-c
Confidence            9999888 3455443332          1112222221        111 1100      00   1111111110000 0


Q ss_pred             C--cEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc----ee------eeeeccCCcceEEEEECCCCC
Q psy15421        258 D--QELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT----ER------AGILAGHDNRVSCLGVTEDGM  325 (340)
Q Consensus       258 ~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~----~~------~~~~~~h~~~i~~~~~s~d~~  325 (340)
                      +  .+-..++. .....++|++++..+..|..|.+.|++.+|-.-..    .+      +.....-.+.|+.+.|.|--+
T Consensus       290 GvLr~~eKyg~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~  368 (1416)
T KOG3617|consen  290 GVLRKSEKYGL-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKS  368 (1416)
T ss_pred             ccccCCcchhh-hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccc
Confidence            0  00011111 12235899999999999999999999999963221    11      112223457889999988544


Q ss_pred             EEE
Q psy15421        326 AVA  328 (340)
Q Consensus       326 ~l~  328 (340)
                      .++
T Consensus       369 ~~a  371 (1416)
T KOG3617|consen  369 TAA  371 (1416)
T ss_pred             hhh
Confidence            433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.22  E-value=0.0016  Score=59.05  Aligned_cols=215  Identities=15%  Similarity=0.115  Sum_probs=111.8

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCce
Q psy15421         97 SSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQ  176 (340)
Q Consensus        97 ~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~  176 (340)
                      ......+.++|+|++++.++ ++.-.+|.....    +...     .+.-....|...+.++.-...+.|.++.--.++.
T Consensus        32 ~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~----r~k~-----~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~  101 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAW----RNKA-----FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEV  101 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTT----EEEE-----EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-T
T ss_pred             CcCCeeEEECCCCCEEEEEc-CCEEEEEEccCC----cccc-----cCceeEEEEecCccEEEEECCCeEEEEEcCcccc
Confidence            34467889999999998854 555566663211    1111     1112234566677888888888999963222222


Q ss_pred             EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCc
Q psy15421        177 CASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIR  256 (340)
Q Consensus       177 ~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  256 (340)
                      ...+.. ...+..+..   |.++...+.+ .|.+||+.+++.++.+...  +|..|.|++++.++|-.+.+ .+.|++..
T Consensus       102 ~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~  173 (443)
T PF04053_consen  102 VKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYN  173 (443)
T ss_dssp             T------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred             ceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence            112221 112333322   6666655444 8999999999999888743  48999999999999988754 77887765


Q ss_pred             CC------------cEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCC
Q psy15421        257 AD------------QELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDG  324 (340)
Q Consensus       257 ~~------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~  324 (340)
                      ..            .. ... ++ ....|.+.+|..+ .++. .+.+ .++.+-  .++. ..+..-+.++.-+.+.|+.
T Consensus       174 ~~~~~~~~~~g~e~~f-~~~-~E-~~~~IkSg~W~~d-~fiY-tT~~-~lkYl~--~Ge~-~~i~~ld~~~yllgy~~~~  244 (443)
T PF04053_consen  174 LEAVAAIPEEGVEDAF-ELI-HE-ISERIKSGCWVED-CFIY-TTSN-HLKYLV--NGET-GIIAHLDKPLYLLGYLPKE  244 (443)
T ss_dssp             HHHHHHBTTTB-GGGE-EEE-EE-E-S--SEEEEETT-EEEE-E-TT-EEEEEE--TTEE-EEEEE-SS--EEEEEETTT
T ss_pred             chhcccccccCchhce-EEE-EE-ecceeEEEEEEcC-EEEE-EcCC-eEEEEE--cCCc-ceEEEcCCceEEEEEEccC
Confidence            33            11 111 11 0124778888766 3333 3333 676643  3332 2232235677888888877


Q ss_pred             CEEEEeeCCCcEEe
Q psy15421        325 MAVATGSWDSFLRI  338 (340)
Q Consensus       325 ~~l~s~s~D~~i~i  338 (340)
                      +.|.....|+.|..
T Consensus       245 ~~ly~~Dr~~~v~~  258 (443)
T PF04053_consen  245 NRLYLIDRDGNVIS  258 (443)
T ss_dssp             TEEEEE-TT--EEE
T ss_pred             CEEEEEECCCCEEE
Confidence            78888888887764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.21  E-value=0.00084  Score=62.13  Aligned_cols=184  Identities=13%  Similarity=0.096  Sum_probs=110.2

Q ss_pred             EcCCCCeEEEEe-CCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC----CeEEEEEccCCCCceEEEE
Q psy15421         63 WGSDSRNLVSAS-QDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD----NICSIYSLKTREGNVRVSR  137 (340)
Q Consensus        63 ~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~  137 (340)
                      ++|||+.+...+ ..+.+.+.|..+.+....+.... ....+.++|+|+++++.+.+    .++..-+.  .+.......
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a--~e~d~~vvf  276 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMA--AERDWVVVF  276 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeecc--ccCceEEEE
Confidence            455665443222 34566777777766655554433 33466889999999887632    12222221  111111111


Q ss_pred             eecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCC----CceEEEEecCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEE
Q psy15421        138 ELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIET----GQQCASFIGHTGDVMSLSLAPDMRTFVS-GACDASAKLWD  212 (340)
Q Consensus       138 ~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~s-g~~dg~i~~wd  212 (340)
                      ....-.      .+..+++.... .++.|.+.|..+    +..+..+..-...+..++++||++++++ +..+.+|.+.|
T Consensus       277 ni~~ie------a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVID  349 (635)
T PRK02888        277 NIARIE------EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVID  349 (635)
T ss_pred             chHHHH------HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEE
Confidence            000000      11123333222 467899999987    4444455555667889999999998775 55699999999


Q ss_pred             CCCCee------------eeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcC
Q psy15421        213 IRDGSC------------KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRA  257 (340)
Q Consensus       213 ~~~~~~------------~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  257 (340)
                      +++.+.            ....+- .......+|+++|..+.|---|..|-.||+..
T Consensus       350 v~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        350 VRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            987442            222221 22234578999999999999999999999865

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.18  E-value=0.00088  Score=60.64  Aligned_cols=227  Identities=10%  Similarity=0.050  Sum_probs=112.6

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      .+.+....-....+.++|+++.++. +.||.-.|+..........-.     -...+|.+.+. +|+-...+.|.|+.--
T Consensus        25 ~k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~G~-----g~~~vw~~~n~-yAv~~~~~~I~I~kn~   97 (443)
T PF04053_consen   25 VKELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAFGS-----GLSFVWSSRNR-YAVLESSSTIKIYKNF   97 (443)
T ss_dssp             -EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEEEE------SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred             eccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccccCc-----eeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence            3444444445788999999998877 667788888754443332221     23456888555 5555668888886322


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDAS  207 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~  207 (340)
                      .......+  .++.   .+..+.  . +.++....++.|.+||.++++.+.++...  .|..+.|++++++++-.+ +..
T Consensus        98 ~~~~~k~i--~~~~---~~~~If--~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t-~~~  166 (443)
T PF04053_consen   98 KNEVVKSI--KLPF---SVEKIF--G-GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT-KDS  166 (443)
T ss_dssp             EE-TT-------SS----EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE--S-S
T ss_pred             ccccceEE--cCCc---ccceEE--c-CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe-CCe
Confidence            11110011  1111   122222  2 55555566669999999999988887633  388999999999888765 447


Q ss_pred             EEEEECCCC-----------eeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEE
Q psy15421        208 AKLWDIRDG-----------SCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSV  276 (340)
Q Consensus       208 i~~wd~~~~-----------~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~  276 (340)
                      +.+++....           .....+..-...|.+..|..+  .|+-.... .++.+  ..+.. ..+.+-.  .++.-+
T Consensus       167 i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~-~~i~~ld--~~~yll  238 (443)
T PF04053_consen  167 IYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL--VNGET-GIIAHLD--KPLYLL  238 (443)
T ss_dssp             EEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE--ETTEE-EEEEE-S--S--EEE
T ss_pred             EEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCc-ceEEEcC--CceEEE
Confidence            777765432           022223222456788888765  33322323 66653  22221 1122211  135556


Q ss_pred             EEcCCCcEEEEEeCCCcEEEEeCC
Q psy15421        277 AFSRSGRLLLAGYDDFNCNVWDSM  300 (340)
Q Consensus       277 ~~s~~~~~l~~g~~d~~i~iw~~~  300 (340)
                      .+.|....+.....|+.+..+.+.
T Consensus       239 gy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  239 GYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EEETTTTEEEEE-TT--EEEEE--
T ss_pred             EEEccCCEEEEEECCCCEEEEEEC
Confidence            667766777777778777777643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.17  E-value=0.0018  Score=57.85  Aligned_cols=265  Identities=11%  Similarity=0.127  Sum_probs=136.7

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCC---C--C
Q psy15421         57 KIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTR---E--G  131 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~---~--~  131 (340)
                      .|..+.|+++...|+.+-..|.|.||.....+.-.  ......-....+.+    +  ...++.-.+-|+..+   .  .
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~----~--~~~~~~~~l~di~~r~~~~~~~   74 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRR----F--SLNNSPGKLTDISDRAPPSLKE   74 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccc----c--cccCCCcceEEehhhCCccccc
Confidence            58899999999999999999999999643322110  00000000000100    0  011111233444331   1  1


Q ss_pred             ceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEe--c------CCCCeEEEEEcC-----CC--
Q psy15421        132 NVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFI--G------HTGDVMSLSLAP-----DM--  196 (340)
Q Consensus       132 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~--  196 (340)
                      ......-+....+.|+++..++=+.++.|..+|.+.+.|++....+..-.  .      ....+.++.|..     |+  
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             ccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence            23334445566889999999877889999999999999998877665521  1      223466777752     22  


Q ss_pred             -CEEEEEeCCCcEEEEECCC---Ceee----eEecCCCCCeEEEEEe-cC-C-------------------CEEEEEeCC
Q psy15421        197 -RTFVSGACDASAKLWDIRD---GSCK----QTFPGHESDINAVTFF-PN-G-------------------WAFATGSDD  247 (340)
Q Consensus       197 -~~~~sg~~dg~i~~wd~~~---~~~~----~~~~~h~~~v~~v~~~-~~-~-------------------~~l~s~s~d  247 (340)
                       -.+++|...|.+.+|.+--   +...    .....+.++|..+... .+ |                   ..++....+
T Consensus       155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe  234 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE  234 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred             ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence             3678899999999997741   2111    1112455666655532 11 1                   124555557


Q ss_pred             CcEEEEeCcCCcEEEEeecCCcccceEEEEE-----cCCCcEEEEEeCCCcEEEEeCCCceeeeeeccC----CcceEEE
Q psy15421        248 ATCRLFDIRADQELAMYSHDNIICGITSVAF-----SRSGRLLLAGYDDFNCNVWDSMKTERAGILAGH----DNRVSCL  318 (340)
Q Consensus       248 ~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~-----s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h----~~~i~~~  318 (340)
                      ..+|++...+.+...........+  ..+.+     ...+..|++=..+|.|++|.+-..+.+..+.-.    ...+...
T Consensus       235 ~~irv~~~~~~k~~~K~~~~~~~~--~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s  312 (395)
T PF08596_consen  235 SDIRVFKPPKSKGAHKSFDDPFLC--SSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS  312 (395)
T ss_dssp             SEEEEE-TT---EEEEE-SS-EEE--EEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred             cceEEEeCCCCcccceeecccccc--ceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence            899999987766554433221222  23333     235678888899999999998887776655432    2334556


Q ss_pred             EECCCCCEEEEee
Q psy15421        319 GVTEDGMAVATGS  331 (340)
Q Consensus       319 ~~s~d~~~l~s~s  331 (340)
                      +++++|..++-.|
T Consensus       313 sis~~Gdi~~~~g  325 (395)
T PF08596_consen  313 SISRNGDIFYWTG  325 (395)
T ss_dssp             EE-TTS-EEEE-S
T ss_pred             EECCCCCEEEEeC
Confidence            7788888765544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.10  E-value=0.0048  Score=52.96  Aligned_cols=241  Identities=14%  Similarity=0.184  Sum_probs=130.3

Q ss_pred             EEEcCCCCeEEEEe----------CCCeEEEEeCCCCCeeEEeeCCCC-c------EEEEEECCCCCEEEEEeC--CCeE
Q psy15421         61 MHWGSDSRNLVSAS----------QDGKLIVWDSYTTNKVHAIPLRSS-W------VMTCAYAPSGSFVACGGL--DNIC  121 (340)
Q Consensus        61 ~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~-~------i~~v~~~~~~~~l~~~~~--d~~v  121 (340)
                      +..+||++.+.++.          ..-.|.+||..+-.....+..... .      ....+++.|+++++....  ...|
T Consensus        41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV  120 (342)
T PF06433_consen   41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV  120 (342)
T ss_dssp             EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE
T ss_pred             eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE
Confidence            55689999888654          234699999998876665543322 1      123467778887765432  3456


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECC-CCceEEEEe----cCCCCe-EEEEEcCC
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIE-TGQQCASFI----GHTGDV-MSLSLAPD  195 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~----~~~~~v-~~~~~~~~  195 (340)
                      .|.|+..++  ..-....++    ...+....+..+.+-|.||++.-..+. .|+...+..    .-.+++ ..-++...
T Consensus       121 tVVDl~~~k--vv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~  194 (342)
T PF06433_consen  121 TVVDLAAKK--VVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD  194 (342)
T ss_dssp             EEEETTTTE--EEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred             EEEECCCCc--eeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence            666765432  111112222    111111234468888999999988886 455433221    111222 23334444


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeee--eEecCCC----------CCeEEEEEecCCCEEEEE---eC-----CC--cEEEE
Q psy15421        196 MRTFVSGACDASAKLWDIRDGSCK--QTFPGHE----------SDINAVTFFPNGWAFATG---SD-----DA--TCRLF  253 (340)
Q Consensus       196 ~~~~~sg~~dg~i~~wd~~~~~~~--~~~~~h~----------~~v~~v~~~~~~~~l~s~---s~-----d~--~i~iw  253 (340)
                      +..++--+.+|.|.--|+......  ..+.--.          +.-.-+++++....|..-   +.     |+  .|-++
T Consensus       195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~  274 (342)
T PF06433_consen  195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY  274 (342)
T ss_dssp             TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred             CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence            455555688899988887655422  1221100          111235565543333221   11     12  25666


Q ss_pred             eCcCCcEEEEeecCCcccceEEEEEcCCCc-EEEEE-eCCCcEEEEeCCCceeeeeecc
Q psy15421        254 DIRADQELAMYSHDNIICGITSVAFSRSGR-LLLAG-YDDFNCNVWDSMKTERAGILAG  310 (340)
Q Consensus       254 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g-~~d~~i~iw~~~~~~~~~~~~~  310 (340)
                      |+.+++.+..+..+.   .+.++..+.+.+ +|.+. ..++.+.+||..+++.+..+.+
T Consensus       275 D~~t~krv~Ri~l~~---~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  275 DLKTHKRVARIPLEH---PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             ETTTTEEEEEEEEEE---EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             ECCCCeEEEEEeCCC---ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            788888877665432   366889988876 55443 4578999999999998887753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2444|consensus

Probab=98.09  E-value=4.7e-06  Score=66.08  Aligned_cols=139  Identities=13%  Similarity=0.102  Sum_probs=87.6

Q ss_pred             EEEEeCCCcEEEEECCCCeee-eEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEE
Q psy15421        199 FVSGACDASAKLWDIRDGSCK-QTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVA  277 (340)
Q Consensus       199 ~~sg~~dg~i~~wd~~~~~~~-~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  277 (340)
                      +..-+.||.|+-++++..+.. +.-.-|...   ......+..++.|+.+|.|++|+...................+-+.
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            445577888888877643211 111112111   1122345689999999999999876321111000000000012222


Q ss_pred             EcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCC-cceEEEEECCCCCEEEEe--eCCCcEEecC
Q psy15421        278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHD-NRVSCLGVTEDGMAVATG--SWDSFLRIWN  340 (340)
Q Consensus       278 ~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~-~~i~~~~~s~d~~~l~s~--s~D~~i~iW~  340 (340)
                      -..++.+..++..|+.|+.|+..-.+.+....+|. .++..+..+..+.+|+++  |+|..++.||
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~  175 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN  175 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence            23456688899999999999998888888777887 677777777777788888  9999999996

>smart00320 WD40 WD40 repeats

Probab=98.07  E-value=1.4e-05  Score=44.87  Aligned_cols=38  Identities=29%  Similarity=0.537  Sum_probs=33.9

Q ss_pred             eeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        303 ERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       303 ~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++...+..|...|+++.|.+++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44566678999999999999999999999999999997

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.04  E-value=0.011  Score=54.81  Aligned_cols=236  Identities=19%  Similarity=0.173  Sum_probs=131.3

Q ss_pred             CeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCc--EEEEEECC--CCCEEEEEe---------CCCeEEEEEccCCCCceE
Q psy15421         68 RNLVSASQDGKLIVWDSYTTNKVHAIPLRSSW--VMTCAYAP--SGSFVACGG---------LDNICSIYSLKTREGNVR  134 (340)
Q Consensus        68 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--i~~v~~~~--~~~~l~~~~---------~d~~v~i~~~~~~~~~~~  134 (340)
                      ..++.++.++.|+-+|..+++.+.........  -..+.-+|  .+..++.++         .++.+..+|..+++...+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            56777888999999999999988766543221  00111111  123344443         356677777766654433


Q ss_pred             EEEeec------C---------CC-cceE-EEEEc-CCCeEEEEeCCC------------------eEEEEECCCCceEE
Q psy15421        135 VSRELP------G---------HT-GYLS-CCRFL-DDNQIVTSSGDM------------------SCALWDIETGQQCA  178 (340)
Q Consensus       135 ~~~~~~------~---------~~-~~v~-~~~~~-~~~~l~~~~~d~------------------~v~iwd~~~~~~~~  178 (340)
                      .....+      .         +. ..+. ...+. ..+.++.++.++                  .+.-+|+++|+..-
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W  270 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW  270 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence            221100      0         00 0000 11111 245666666554                  79999999999877


Q ss_pred             EEec--CCC----CeEEEEEc----CCCC---EEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEE--
Q psy15421        179 SFIG--HTG----DVMSLSLA----PDMR---TFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFAT--  243 (340)
Q Consensus       179 ~~~~--~~~----~v~~~~~~----~~~~---~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s--  243 (340)
                      .+..  +..    ......+.    -++.   .++.++.+|.+...|.++|+.+-..+..   ...++.+| +..++.  
T Consensus       271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~  346 (488)
T cd00216         271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAF  346 (488)
T ss_pred             EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccc
Confidence            6542  110    00111111    1232   5778889999999999999876544311   11123334 222221  


Q ss_pred             ---------------EeCCCcEEEEeCcCCcEEEEeecCCcc------cce--EEEEEcCCCcEEEEEeCCCcEEEEeCC
Q psy15421        244 ---------------GSDDATCRLFDIRADQELAMYSHDNII------CGI--TSVAFSRSGRLLLAGYDDFNCNVWDSM  300 (340)
Q Consensus       244 ---------------~s~d~~i~iwd~~~~~~~~~~~~~~~~------~~i--~~~~~s~~~~~l~~g~~d~~i~iw~~~  300 (340)
                                     ...+|.+.-.|..+++.+.........      .+.  ..++  -.+..+++|+.||.++.+|..
T Consensus       347 ~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~  424 (488)
T cd00216         347 HIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDAT  424 (488)
T ss_pred             cccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECC
Confidence                           123577888888888877665432100      001  1111  245788889999999999999


Q ss_pred             Cceeeeeec
Q psy15421        301 KTERAGILA  309 (340)
Q Consensus       301 ~~~~~~~~~  309 (340)
                      +++.+-...
T Consensus       425 tG~~lW~~~  433 (488)
T cd00216         425 TGKELWKFR  433 (488)
T ss_pred             CCceeeEEE
Confidence            998776553

The alignment model contains an 8-bladed beta-propeller.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.02  E-value=0.01  Score=53.70  Aligned_cols=172  Identities=12%  Similarity=0.057  Sum_probs=86.6

Q ss_pred             cceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEE-------ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE-CCC
Q psy15421        144 GYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF-------IGHTGDVMSLSLAPDMRTFVSGACDASAKLWD-IRD  215 (340)
Q Consensus       144 ~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd-~~~  215 (340)
                      +.+..+.|..+..|+....||.+++||+.... ...+       .-....+....+..+|-.+++  .++.+.+.. ...
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~  157 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDE  157 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccc
Confidence            56777888888889999999999999996433 1111       111111222222223422333  344443332 221


Q ss_pred             Ceeee---EecCCCC-----C-eEE-EEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEE
Q psy15421        216 GSCKQ---TFPGHES-----D-INA-VTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLL  285 (340)
Q Consensus       216 ~~~~~---~~~~h~~-----~-v~~-v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
                      ....+   ..+....     . ... ..++.+....+....++.+.+.+....+.   .   ....++..++.||+++++
T Consensus       158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~i~~iavSpng~~i  231 (410)
T PF04841_consen  158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I---DSDGPIIKIAVSPNGKFI  231 (410)
T ss_pred             cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c---cCCCCeEEEEECCCCCEE
Confidence            10111   1111000     0 000 22334444445555555555443322111   1   112358999999999999


Q ss_pred             EEEeCCCcEEEEeCCCceeeeeeccC-CcceEEEEECCCC
Q psy15421        286 LAGYDDFNCNVWDSMKTERAGILAGH-DNRVSCLGVTEDG  324 (340)
Q Consensus       286 ~~g~~d~~i~iw~~~~~~~~~~~~~h-~~~i~~~~~s~d~  324 (340)
                      |.-..+|.+.+....-.+....+.-. ......+.|..+.
T Consensus       232 Al~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  232 ALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             EEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            99999999998875444444333322 2333445554443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.94  E-value=0.01  Score=51.07  Aligned_cols=256  Identities=16%  Similarity=0.177  Sum_probs=142.9

Q ss_pred             CeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEe----------CCCeEEEEEccCCCCceEEEEeecCC-Cc-
Q psy15421         77 GKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGG----------LDNICSIYSLKTREGNVRVSRELPGH-TG-  144 (340)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~----------~d~~v~i~~~~~~~~~~~~~~~~~~~-~~-  144 (340)
                      +.+++.|..+++.+-.+..  +....+..+|+++.++++.          ....|.+||..+-.  ......+|.. .- 
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~--~~~EI~iP~k~R~~   92 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS--PTGEIEIPPKPRAQ   92 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE--EEEEEEETTS-B--
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCc--ccceEecCCcchhe
Confidence            4799999998887777664  2334466899999888753          33468999987642  1222234432 11 


Q ss_pred             ---ceEEEEEcCCCeEEE---EeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCe
Q psy15421        145 ---YLSCCRFLDDNQIVT---SSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIR-DGS  217 (340)
Q Consensus       145 ---~v~~~~~~~~~~l~~---~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~-~~~  217 (340)
                         ......++.+++++.   .+-..+|.+-|+..++.+..+.-. + +. +.+-...+.|.+-|.||.+....+. .|+
T Consensus        93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~-~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk  169 (342)
T PF06433_consen   93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CW-LIYPSGNRGFSMLCGDGSLLTVTLDADGK  169 (342)
T ss_dssp             BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EE-EEEEEETTEEEEEETTSCEEEEEETSTSS
T ss_pred             ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EE-EEEecCCCceEEEecCCceEEEEECCCCC
Confidence               111223334443222   233456777777776665554321 1 21 2221123468888999999988887 454


Q ss_pred             eeeE----ecCCCCCe-EEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEE--eecC-------Cc-ccceEEEEEcCCC
Q psy15421        218 CKQT----FPGHESDI-NAVTFFPNGWAFATGSDDATCRLFDIRADQELAM--YSHD-------NI-ICGITSVAFSRSG  282 (340)
Q Consensus       218 ~~~~----~~~h~~~v-~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~--~~~~-------~~-~~~i~~~~~s~~~  282 (340)
                      ....    |..-..++ ..-++...+..++=-+.+|.|+--|+........  +...       .. ..+-.-+++++..
T Consensus       170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~  249 (342)
T PF06433_consen  170 EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS  249 (342)
T ss_dssp             EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT
T ss_pred             EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecccc
Confidence            3321    11111222 2223344433444467789998888876543221  1110       00 1234567888766


Q ss_pred             cEEEEEeCC----------CcEEEEeCCCceeeeeeccCCcceEEEEECCCCC-EEEEee-CCCcEEecC
Q psy15421        283 RLLLAGYDD----------FNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGM-AVATGS-WDSFLRIWN  340 (340)
Q Consensus       283 ~~l~~g~~d----------~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~-~l~s~s-~D~~i~iW~  340 (340)
                      ..|.+-...          ..|-++|..+.+.+.++.- ..++.+++.|.|.+ +|+..+ .++.+.++|
T Consensus       250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D  318 (342)
T PF06433_consen  250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD  318 (342)
T ss_dssp             TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence            555542222          2477778889998888753 35688999998776 665544 578898886

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>smart00320 WD40 WD40 repeats

Probab=97.94  E-value=3.4e-05  Score=43.19  Aligned_cols=37  Identities=35%  Similarity=0.704  Sum_probs=33.4

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEe
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD   83 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd   83 (340)
                      ....+.+|...|.++.|++++..+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3456778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.93  E-value=0.012  Score=51.47  Aligned_cols=215  Identities=12%  Similarity=0.119  Sum_probs=120.8

Q ss_pred             eEEEEeCCCCCeeEEeeCCC-CcEEE---EEECCC----CCEEEEEeC----------CCeEEEEEccCC-C--CceEEE
Q psy15421         78 KLIVWDSYTTNKVHAIPLRS-SWVMT---CAYAPS----GSFVACGGL----------DNICSIYSLKTR-E--GNVRVS  136 (340)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~-~~i~~---v~~~~~----~~~l~~~~~----------d~~v~i~~~~~~-~--~~~~~~  136 (340)
                      .|++.|..+.+.+..+.... ..+.+   +.+..+    ..+++.|..          .|.+.++++... .  ...+..
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            57888887777665554332 23333   334432    467777643          278999998763 1  223322


Q ss_pred             EeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCc-eEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy15421        137 RELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQ-QCASFI-GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIR  214 (340)
Q Consensus       137 ~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~  214 (340)
                      ... ...+.|.++... ++.++.+ .+..|.+|++...+ ....-. .....+.++...  +++++.|..-..+.++.++
T Consensus        83 ~~~-~~~g~V~ai~~~-~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~  157 (321)
T PF03178_consen   83 HST-EVKGPVTAICSF-NGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD  157 (321)
T ss_dssp             EEE-EESS-EEEEEEE-TTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred             EEE-eecCcceEhhhh-CCEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence            222 235667777655 4455544 45889999998877 333222 122345555554  5589999998999887554


Q ss_pred             C-CeeeeEec--CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcC-------Cc-EEEEeecCCcccceEEE---EEcC
Q psy15421        215 D-GSCKQTFP--GHESDINAVTFFPNGWAFATGSDDATCRLFDIRA-------DQ-ELAMYSHDNIICGITSV---AFSR  280 (340)
Q Consensus       215 ~-~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~-------~~-~~~~~~~~~~~~~i~~~---~~s~  280 (340)
                      . +.....+.  .....+.++.+-+++..++.+..+|.+.++....       .. .+.....-.....|+++   .+.|
T Consensus       158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~  237 (321)
T PF03178_consen  158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIP  237 (321)
T ss_dssp             TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS-
T ss_pred             ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeee
Confidence            3 22222221  2234578888887767999999999999998752       11 22222222222335665   4455


Q ss_pred             C--C------cEEEEEeCCCcEEEE
Q psy15421        281 S--G------RLLLAGYDDFNCNVW  297 (340)
Q Consensus       281 ~--~------~~l~~g~~d~~i~iw  297 (340)
                      .  +      ..++.++.+|.|-+.
T Consensus       238 ~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  238 RSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             cCCCCcccccceEEEEecCCEEEEE
Confidence            1  2      248888899988743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1008|consensus

Probab=97.92  E-value=3.4e-06  Score=76.07  Aligned_cols=181  Identities=17%  Similarity=0.242  Sum_probs=116.2

Q ss_pred             eEEEEeCCCeEEEEECCCCce--EEEEecCCCCeEEEEEcCC-CCEEEEEe----CCCcEEEEECCCC--eeee--EecC
Q psy15421        156 QIVTSSGDMSCALWDIETGQQ--CASFIGHTGDVMSLSLAPD-MRTFVSGA----CDASAKLWDIRDG--SCKQ--TFPG  224 (340)
Q Consensus       156 ~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~~~sg~----~dg~i~~wd~~~~--~~~~--~~~~  224 (340)
                      .++.|..+|.|.+-.++...-  -....+|...+++++|++- .+.++.|-    .|-.++|||+.++  .+..  .+.+
T Consensus        72 IlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~  151 (783)
T KOG1008|consen   72 ILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS  151 (783)
T ss_pred             hhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccccc
Confidence            466778889999988765322  2334567788999999984 45566553    3678999999876  2221  1222


Q ss_pred             -CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcC-CCcEEEEEeCCCcEEEEeC-CC
Q psy15421        225 -HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSR-SGRLLLAGYDDFNCNVWDS-MK  301 (340)
Q Consensus       225 -h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~d~~i~iw~~-~~  301 (340)
                       .....++++|..+.+.+.+|...+.++++|++........-...   -+..+...| .+.++++- .|+.|.+||. .+
T Consensus       152 ~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk---~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rn  227 (783)
T KOG1008|consen  152 STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTK---YVQGITVDPFSPNYFCSN-SDGDIAIWDTYRN  227 (783)
T ss_pred             ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhh---hcccceecCCCCCceecc-ccCceeeccchhh
Confidence             33456789999889999999999999999998432111110111   245567778 55666554 5999999993 33


Q ss_pred             ceeeeeeccCC-c----ceEEEEECCCC-CEEEEeeCC-CcEEecC
Q psy15421        302 TERAGILAGHD-N----RVSCLGVTEDG-MAVATGSWD-SFLRIWN  340 (340)
Q Consensus       302 ~~~~~~~~~h~-~----~i~~~~~s~d~-~~l~s~s~D-~~i~iW~  340 (340)
                      .+.......|. +    .+..++|+|-. ..+++.+.| ++|+++|
T Consensus       228 ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd  273 (783)
T KOG1008|consen  228 IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD  273 (783)
T ss_pred             hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence            33222222232 2    38899999854 357777776 5566553

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.89  E-value=0.01  Score=51.94  Aligned_cols=169  Identities=14%  Similarity=0.138  Sum_probs=101.1

Q ss_pred             CeEEEEECCCC----ceEEEE--ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eeeEe-cCCCCCeEEEEEe
Q psy15421        164 MSCALWDIETG----QQCASF--IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS-CKQTF-PGHESDINAVTFF  235 (340)
Q Consensus       164 ~~v~iwd~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~-~~~~~-~~h~~~v~~v~~~  235 (340)
                      |.+.++++...    ..+..+  ....++|.+++-. ++ .++. +..+.|.+|++...+ ....- -.....+.++...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~  138 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF  138 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEE-EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEE-eecCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence            88999999874    222222  2357788888876 33 3433 345899999998776 43221 1122356666655


Q ss_pred             cCCCEEEEEeCCCcEEEEeCcC-CcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCC-------ce-eee
Q psy15421        236 PNGWAFATGSDDATCRLFDIRA-DQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK-------TE-RAG  306 (340)
Q Consensus       236 ~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~-------~~-~~~  306 (340)
                        +.+++.|...+.+.++.+.. ...+...........++++.|-+++..++++..+|++.++....       +. .+.
T Consensus       139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~  216 (321)
T PF03178_consen  139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLE  216 (321)
T ss_dssp             --TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEE
T ss_pred             --ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccce
Confidence              55999999999999886654 33344444433344588889986767999999999999987541       11 111


Q ss_pred             -eeccC-CcceEEE---EECCC--CC------EEEEeeCCCcEE
Q psy15421        307 -ILAGH-DNRVSCL---GVTED--GM------AVATGSWDSFLR  337 (340)
Q Consensus       307 -~~~~h-~~~i~~~---~~s~d--~~------~l~s~s~D~~i~  337 (340)
                       ...-| .+.|+++   ++.|.  +.      .++-++.+|.|-
T Consensus       217 ~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig  260 (321)
T PF03178_consen  217 RISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIG  260 (321)
T ss_dssp             EEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred             eEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEE
Confidence             11223 3567777   55552  22      377788888875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1008|consensus

Probab=97.86  E-value=5.6e-06  Score=74.71  Aligned_cols=196  Identities=17%  Similarity=0.253  Sum_probs=125.5

Q ss_pred             EEEEEECC--CCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC--CeEEEEe----CCCeEEEEEC
Q psy15421        100 VMTCAYAP--SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSS----GDMSCALWDI  171 (340)
Q Consensus       100 i~~v~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~----~d~~v~iwd~  171 (340)
                      +.|++..-  +...++.|..+|.|-+-..+.....  -....+++..+.++..|.+-  +.|++|-    .|..+.|||+
T Consensus        59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             ceeehhhcCCchhhhhhccccCceEEeecCCcccc--cceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            44554433  3457888999999988887654322  12345677778888888653  4566552    4678999999


Q ss_pred             CCCc----eEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eeeEecCCCCCeEEEEEec-CCCEEEEE
Q psy15421        172 ETGQ----QCASFIG-HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS-CKQTFPGHESDINAVTFFP-NGWAFATG  244 (340)
Q Consensus       172 ~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~-~~~~~~~h~~~v~~v~~~~-~~~~l~s~  244 (340)
                      .++-    ....+.+ ......+++|-.+.+++++|...+.++++|++... ....+.  ...+..+.++| .+.|+++.
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn--Tk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN--TKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh--hhhcccceecCCCCCceecc
Confidence            8751    1112222 33456688898899999999999999999998432 122221  23455677888 66677777


Q ss_pred             eCCCcEEEEe-CcCC-cEEEEeec--CCcccceEEEEEcCC--CcEEEEEeCCCcEEEEeCC
Q psy15421        245 SDDATCRLFD-IRAD-QELAMYSH--DNIICGITSVAFSRS--GRLLLAGYDDFNCNVWDSM  300 (340)
Q Consensus       245 s~d~~i~iwd-~~~~-~~~~~~~~--~~~~~~i~~~~~s~~--~~~l~~g~~d~~i~iw~~~  300 (340)
                      . |+.|-+|| .++- .++....+  ......+..++|.|.  |...+.--+.++|+.++..
T Consensus       215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            6 99999999 3322 22221111  112235889999986  4444445566889999853

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.86  E-value=0.02  Score=51.79  Aligned_cols=196  Identities=14%  Similarity=0.141  Sum_probs=101.5

Q ss_pred             eEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEee---cCCCcceEEEEEcCC
Q psy15421         78 KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSREL---PGHTGYLSCCRFLDD  154 (340)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~  154 (340)
                      .|+||+. .|+.+..+.-..+.+..+.|+.+. .|++...||.+++|++.... ........   .-....+....+...
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence            4888875 466676666555889999998854 55567899999999985321 11111111   001111222233334


Q ss_pred             CeEEEEeCCCeEEEE-ECCCCceEEEEe---c-----CCCC-eEE-EEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEec
Q psy15421        155 NQIVTSSGDMSCALW-DIETGQQCASFI---G-----HTGD-VMS-LSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP  223 (340)
Q Consensus       155 ~~l~~~~~d~~v~iw-d~~~~~~~~~~~---~-----~~~~-v~~-~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~  223 (340)
                      |.++.. .++.+.+. +.........+.   .     +... ... ..++.+....+....++.+.+.+-....   .+.
T Consensus       139 GivvLt-~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~---~i~  214 (410)
T PF04841_consen  139 GIVVLT-GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK---QID  214 (410)
T ss_pred             CEEEEC-CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc---ccc
Confidence            544333 33333332 222110111110   0     0000 000 1233344444444445555544322211   122


Q ss_pred             CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCC
Q psy15421        224 GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSG  282 (340)
Q Consensus       224 ~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  282 (340)
                       ..+++..++++|+++++|.-..+|.+.+.+..-.+.+..+.... ...+..+.|..+.
T Consensus       215 -~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~-~~~p~~~~WCG~d  271 (410)
T PF04841_consen  215 -SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS-KSPPKQMAWCGND  271 (410)
T ss_pred             -CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc-CCCCcEEEEECCC
Confidence             23579999999999999999999999988766555554443331 2235567776554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1645|consensus

Probab=97.84  E-value=5e-05  Score=64.97  Aligned_cols=93  Identities=10%  Similarity=0.141  Sum_probs=74.1

Q ss_pred             EEEEECCCCceEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCC-CEEEE
Q psy15421        166 CALWDIETGQQCASFIGHTGDVMSLSLAPDMR-TFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG-WAFAT  243 (340)
Q Consensus       166 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s  243 (340)
                      +++.+..+.+...-+..+...|..++|+|... ++..++.+.+|++.|+++..++..+..+ ..+++.+|+-+. .++..
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            44444444444455556777899999999877 6778999999999999999888888777 789999999875 46778


Q ss_pred             EeCCCcEEEEeCcCCc
Q psy15421        244 GSDDATCRLFDIRADQ  259 (340)
Q Consensus       244 ~s~d~~i~iwd~~~~~  259 (340)
                      |-.+|.|.|||++...
T Consensus       254 Gl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPE  269 (463)
T ss_pred             eccCceEEEEEccCCC
Confidence            8889999999998654

>KOG4649|consensus

Probab=97.83  E-value=0.012  Score=48.20  Aligned_cols=255  Identities=14%  Similarity=0.172  Sum_probs=124.8

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcce
Q psy15421         67 SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYL  146 (340)
Q Consensus        67 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v  146 (340)
                      |+.++-|...|.+++-+..++.+...+..-..--..-...+++..+.+|+.|++....|.++.....  ..++.+-. .+
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVy--kskcgG~~-f~  139 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY--KSKCGGGT-FV  139 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEE--ecccCCce-ec
Confidence            5578889999999999999997766554322211122457789999999999998888876543221  12222211 11


Q ss_pred             EEEEEcC-CCeEEEEeCCCeEEEEECCCCceEEEEecC--CCCeEE--EEEcCCCCEEEEEeCCCcEEEEECCCCeeeeE
Q psy15421        147 SCCRFLD-DNQIVTSSGDMSCALWDIETGQQCASFIGH--TGDVMS--LSLAPDMRTFVSGACDASAKLWDIRDGSCKQT  221 (340)
Q Consensus       147 ~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~--~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~  221 (340)
                      .-+ ..+ ++.|..+...|.+.--..+... ...+-.|  .+++.+  ++.   +..+..+.-||.+.-+| ..|+.+..
T Consensus       140 sP~-i~~g~~sly~a~t~G~vlavt~~~~~-~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr  213 (354)
T KOG4649|consen  140 SPV-IAPGDGSLYAAITAGAVLAVTKNPYS-STEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWR  213 (354)
T ss_pred             cce-ecCCCceEEEEeccceEEEEccCCCC-cceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEe
Confidence            111 111 2334444444444333333221 1111111  112211  111   22344455666666665 44544432


Q ss_pred             ecCCCCCeE-----------EEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEc-C---CCcEEE
Q psy15421        222 FPGHESDIN-----------AVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS-R---SGRLLL  286 (340)
Q Consensus       222 ~~~h~~~v~-----------~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s-~---~~~~l~  286 (340)
                      +. ..++|.           .+.+-..+ .+.+.-....-.+|....+..+..+..++.     .++++ |   ..++|.
T Consensus       214 ~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~-Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l-----~F~~h~~~~S~~~ll~  286 (354)
T KOG4649|consen  214 PA-TKGPIFMEPCESRPSCQQISLENEN-CFCAPLPIAGHLLWATQSGTTLHVYLSPKL-----RFDLHSPGISYPKLLR  286 (354)
T ss_pred             ec-CCCceecccccCCCcceEEEEecCC-eEEEeccccceEEEEecCCcEEEEEeCccc-----ceeccCCCCcchhhhh
Confidence            22 122221           12222222 222222222334566655544443333221     12222 1   145777


Q ss_pred             EEeCCCcEEEEeCCCceeeeeeccCCcceEEE---E-----E-CC---CCCEEEEeeCCCcEEecC
Q psy15421        287 AGYDDFNCNVWDSMKTERAGILAGHDNRVSCL---G-----V-TE---DGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       287 ~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~---~-----~-s~---d~~~l~s~s~D~~i~iW~  340 (340)
                      .++.||++.|.  ++.+.+.....|.+.+..+   .     | ||   +| +|+-|..|..|+-||
T Consensus       287 ~~s~dgkv~il--~~~~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cld  349 (354)
T KOG4649|consen  287 RSSGDGKVMIL--MTSKSLAEISSNGGELQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLD  349 (354)
T ss_pred             hhcCCCcEEEE--EecccccccccCCCccceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEe
Confidence            88899988775  3333444445554433222   1     2 23   44 577788999999886

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.82  E-value=0.029  Score=52.51  Aligned_cols=191  Identities=15%  Similarity=0.104  Sum_probs=110.8

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCC-CcEE---E-------EEECCCCCEEEEEeCCCeEEEEEccCCCCceEE
Q psy15421         67 SRNLVSASQDGKLIVWDSYTTNKVHAIPLRS-SWVM---T-------CAYAPSGSFVACGGLDNICSIYSLKTREGNVRV  135 (340)
Q Consensus        67 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~i~---~-------v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  135 (340)
                      +..++.++.++.|+-.|..+++.+....... ..+.   +       +++  .+..++.++.++.+...|..+++...  
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W--  144 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVW--  144 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEe--
Confidence            4567777888899999999999876654321 1111   1       111  23456677788888778876654332  


Q ss_pred             EEeecCCCc--ceEEEEEcCCCeEEEEeC------CCeEEEEECCCCceEEEEecCCC----------------------
Q psy15421        136 SRELPGHTG--YLSCCRFLDDNQIVTSSG------DMSCALWDIETGQQCASFIGHTG----------------------  185 (340)
Q Consensus       136 ~~~~~~~~~--~v~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~----------------------  185 (340)
                      ......+..  .+.+.....++.++.+..      ++.|..+|.++|+.+-.+..-..                      
T Consensus       145 ~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~  224 (527)
T TIGR03075       145 SKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP  224 (527)
T ss_pred             ecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence            222211111  111111112445555432      68999999999987765432110                      


Q ss_pred             ---------Ce-EEEEEcCCCCEEEEEeCC-----C-----------cEEEEECCCCeeeeEecCCCCCeE---------
Q psy15421        186 ---------DV-MSLSLAPDMRTFVSGACD-----A-----------SAKLWDIRDGSCKQTFPGHESDIN---------  230 (340)
Q Consensus       186 ---------~v-~~~~~~~~~~~~~sg~~d-----g-----------~i~~wd~~~~~~~~~~~~h~~~v~---------  230 (340)
                               .+ ..+++.|...+++.+...     +           .|.-.|+++|+.+-.++.....+.         
T Consensus       225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~  304 (527)
T TIGR03075       225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI  304 (527)
T ss_pred             CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence                     11 134666666666654422     2           566668888887766653222221         


Q ss_pred             EEEEecCCC---EEEEEeCCCcEEEEeCcCCcEE
Q psy15421        231 AVTFFPNGW---AFATGSDDATCRLFDIRADQEL  261 (340)
Q Consensus       231 ~v~~~~~~~---~l~s~s~d~~i~iwd~~~~~~~  261 (340)
                      -+.+..+|+   .++.+..+|.+++.|-++++.+
T Consensus       305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            222334665   6789999999999999888775

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG3621|consensus

Probab=97.81  E-value=0.0028  Score=58.47  Aligned_cols=140  Identities=10%  Similarity=0.157  Sum_probs=96.8

Q ss_pred             ccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeE-EeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCc
Q psy15421         54 HLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVH-AIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGN  132 (340)
Q Consensus        54 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~  132 (340)
                      |...|.--+++..+++++-|++-|.+++++-+.++... ...+..+.+..+..+++..++|.|+..+.|.++.+..+...
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            34556666777889999999999999999988766432 22223445566778999999999999999999988763211


Q ss_pred             -eEEEEee-cCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCc----eEEEEecCCCCeEEEEEc
Q psy15421        133 -VRVSREL-PGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQ----QCASFIGHTGDVMSLSLA  193 (340)
Q Consensus       133 -~~~~~~~-~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~  193 (340)
                       ....... ..|...|+++.|+.++ ++.+|...|.|.+-.+.+..    ..+.+..-.++|..++..
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence             1111111 2377899999998775 68899999999988887621    123333344556555543

>KOG4649|consensus

Probab=97.81  E-value=0.013  Score=47.96  Aligned_cols=123  Identities=14%  Similarity=0.098  Sum_probs=80.7

Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeE
Q psy15421        109 GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVM  188 (340)
Q Consensus       109 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~  188 (340)
                      ..+++.|+..+.+.-.|..++.  +.+...+ +  ..+.+-...-++.++.|+..+.+.+.+.++|.+...+.....-=.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~--~~We~il-g--~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~   97 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGN--LIWEAIL-G--VRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV   97 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCc--EEeehhh-C--ceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc
Confidence            5677788888887777766543  3222221 1  112221111255688899999999999999988777654333223


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEec
Q psy15421        189 SLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFP  236 (340)
Q Consensus       189 ~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~  236 (340)
                      .....+++..+..|+.|+.....|.++..++...+-..+...+-+..|
T Consensus        98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~  145 (354)
T KOG4649|consen   98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP  145 (354)
T ss_pred             ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence            445678899999999999999999999888776653333223334445

>KOG3621|consensus

Probab=97.80  E-value=0.00014  Score=66.61  Aligned_cols=110  Identities=15%  Similarity=0.124  Sum_probs=80.9

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCcee---
Q psy15421        228 DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTER---  304 (340)
Q Consensus       228 ~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~---  304 (340)
                      .+.--+++..+.+++.|++-|.+++|+-..++.+..... .....+.....|++..++|+|+..|.|.++-+....+   
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~-~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE-GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhccccc-CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            444445667788999999999999999776655433221 1222356677899999999999999999997654211   


Q ss_pred             ee--eec-cCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        305 AG--ILA-GHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       305 ~~--~~~-~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      +.  .+. .|...|++++|++|++.+.+|..-|.|.+
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~  150 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL  150 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEEeecCCCceEEE
Confidence            11  122 37788999999999999999999888753

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.79  E-value=0.0033  Score=44.61  Aligned_cols=101  Identities=21%  Similarity=0.279  Sum_probs=66.1

Q ss_pred             eEEEEEcC---C-CCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEE
Q psy15421        187 VMSLSLAP---D-MRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELA  262 (340)
Q Consensus       187 v~~~~~~~---~-~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  262 (340)
                      |.+|++.+   + .+.|+.|+.|..||+|+-.  ..+.++.. ...|.++.-.+. ..|+.+..+|+|-+|+-.  +.+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence            55666654   2 2578999999999999743  55666654 356777777665 579999999999999763  2333


Q ss_pred             EeecCCcccceEEEEEc---CCC-cEEEEEeCCCcEEE
Q psy15421        263 MYSHDNIICGITSVAFS---RSG-RLLLAGYDDFNCNV  296 (340)
Q Consensus       263 ~~~~~~~~~~i~~~~~s---~~~-~~l~~g~~d~~i~i  296 (340)
                      .......   ++++.+.   .|| +-|++|-.+|.|.+
T Consensus        76 RiKSK~~---~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   76 RIKSKNQ---VTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eeccCCC---eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            3322222   4444443   233 36888888887753

>KOG4640|consensus

Probab=97.77  E-value=0.0002  Score=64.92  Aligned_cols=94  Identities=17%  Similarity=0.272  Sum_probs=75.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeE-EEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEE
Q psy15421        185 GDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDIN-AVTFFPNGWAFATGSDDATCRLFDIRADQELAM  263 (340)
Q Consensus       185 ~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~-~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  263 (340)
                      ..+.-+.|+|...++|.+..+|.|.+..+. .+.+-+++-|..+++ +++|.|||+.+|.|-.||+|++.|..++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            457788999999999999999999999887 555667776777777 999999999999999999999999998877765


Q ss_pred             eecCCcccceEEEEEcC
Q psy15421        264 YSHDNIICGITSVAFSR  280 (340)
Q Consensus       264 ~~~~~~~~~i~~~~~s~  280 (340)
                      +.. .....|.++-|.|
T Consensus       100 ~~~-s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLF-SVETDISKGIWDR  115 (665)
T ss_pred             ccc-ccccchheeeccc
Confidence            311 1223467777763

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.73  E-value=0.011  Score=53.36  Aligned_cols=158  Identities=13%  Similarity=0.172  Sum_probs=85.7

Q ss_pred             CeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEE--ECCCCeeeeEecCCCCCeEEEEEecCCCE
Q psy15421        164 MSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV-SGACDASAKLW--DIRDGSCKQTFPGHESDINAVTFFPNGWA  240 (340)
Q Consensus       164 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-sg~~dg~i~~w--d~~~~~~~~~~~~h~~~v~~v~~~~~~~~  240 (340)
                      ..+.++++++++...... ..+.-..-+|+||++.++ +...||...+|  |+..+...+ +..-.+.-..-.|+|||++
T Consensus       218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~  295 (425)
T COG0823         218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSK  295 (425)
T ss_pred             ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCE
Confidence            468899998876543332 233344567999998765 55567766555  666655333 3322222225578999988


Q ss_pred             EEEE-eCCCcEEEE--eCcCCcEEE-EeecCCcccceEEEEEcCCCcEEEEEeCC-Cc--EEEEeCCCceeeeeeccCCc
Q psy15421        241 FATG-SDDATCRLF--DIRADQELA-MYSHDNIICGITSVAFSRSGRLLLAGYDD-FN--CNVWDSMKTERAGILAGHDN  313 (340)
Q Consensus       241 l~s~-s~d~~i~iw--d~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-~~--i~iw~~~~~~~~~~~~~h~~  313 (340)
                      ++=. +..|.-.||  |........ +......    ..-.++|||++|+..+.. |.  |.+.+..++..+..+. +..
T Consensus       296 ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~----~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~  370 (425)
T COG0823         296 IVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN----SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STY  370 (425)
T ss_pred             EEEEeCCCCCcceEEECCCCCceeEeeccCCCC----cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccc
Confidence            7644 445554444  444433211 1111111    155889999999876643 33  5566555444333222 222


Q ss_pred             ceEEEEECCCCCEEE
Q psy15421        314 RVSCLGVTEDGMAVA  328 (340)
Q Consensus       314 ~i~~~~~s~d~~~l~  328 (340)
                      ....-.|.++|..+.
T Consensus       371 ~~e~ps~~~ng~~i~  385 (425)
T COG0823         371 LNESPSWAPNGRMIM  385 (425)
T ss_pred             cCCCCCcCCCCceEE
Confidence            222334555555444

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.72  E-value=0.0015  Score=62.57  Aligned_cols=129  Identities=15%  Similarity=0.168  Sum_probs=89.1

Q ss_pred             EEeCCCcEEEEECCCCeeeeEecCCCCC-eEEEEEecC-------CCEEEEEeCCCcEEEEeCcCCc-EEEEeecC--Cc
Q psy15421        201 SGACDASAKLWDIRDGSCKQTFPGHESD-INAVTFFPN-------GWAFATGSDDATCRLFDIRADQ-ELAMYSHD--NI  269 (340)
Q Consensus       201 sg~~dg~i~~wd~~~~~~~~~~~~h~~~-v~~v~~~~~-------~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~--~~  269 (340)
                      .......|.-.|++.|+.+..++.|... |..  +.|+       ......|-.+..+..||.|-.. .+......  ..
T Consensus       499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~  576 (794)
T PF08553_consen  499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS  576 (794)
T ss_pred             cCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence            3445688888999999999999877643 544  4443       3345778888999999998432 22211111  11


Q ss_pred             ccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeC
Q psy15421        270 ICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSW  332 (340)
Q Consensus       270 ~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~  332 (340)
                      ....+|++-+.+| +||+|+.+|.||+||.........+.+-..+|..|..+.||++|+....
T Consensus       577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             CCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence            1236677666665 7889999999999995443334456676799999999999999876553

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.68  E-value=0.029  Score=48.36  Aligned_cols=176  Identities=14%  Similarity=0.118  Sum_probs=102.1

Q ss_pred             cCCCeEEEEeCCCeEEEEECCCCceEEEEec-----CCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEECC-CC
Q psy15421        152 LDDNQIVTSSGDMSCALWDIETGQQCASFIG-----HTGDVMSLSLAPDMRTFVSGAC---------DASAKLWDIR-DG  216 (340)
Q Consensus       152 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~sg~~---------dg~i~~wd~~-~~  216 (340)
                      ..++.|+++.  .-+.+++.+.+.....+..     .....+.+...|++.+.++...         -..=.+|-+. .+
T Consensus        75 d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g  152 (307)
T COG3386          75 DAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG  152 (307)
T ss_pred             cCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC
Confidence            3445555543  3355566555544222211     1134567888899887775433         0111344444 45


Q ss_pred             eeeeEecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCcC------CcEEEEeecCCcccceEEEEEcCCCcEEEEEe
Q psy15421        217 SCKQTFPGHESDINAVTFFPNGWAFATGSD-DATCRLFDIRA------DQELAMYSHDNIICGITSVAFSRSGRLLLAGY  289 (340)
Q Consensus       217 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-d~~i~iwd~~~------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  289 (340)
                      ..++.+..+-..-|.|+|+||++.|...-. .+.|.-|++..      .+..... ........-.++...+|.+.+++.
T Consensus       153 ~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~-~~~~~G~PDG~~vDadG~lw~~a~  231 (307)
T COG3386         153 GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD-FDEEPGLPDGMAVDADGNLWVAAV  231 (307)
T ss_pred             CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE-ccCCCCCCCceEEeCCCCEEEecc
Confidence            556666665566789999999976665544 47787777652      1111111 111112233566777888886665


Q ss_pred             CCC-cEEEEeCCCceeeeeeccCCcceEEEEE-CCCCCEEEEee
Q psy15421        290 DDF-NCNVWDSMKTERAGILAGHDNRVSCLGV-TEDGMAVATGS  331 (340)
Q Consensus       290 ~d~-~i~iw~~~~~~~~~~~~~h~~~i~~~~~-s~d~~~l~s~s  331 (340)
                      .+| .|..|+-. ++.+..+.-....+++++| .|+.+.|...|
T Consensus       232 ~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         232 WGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             cCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence            554 89999865 8877777666578888888 55665544333

>PHA02713 hypothetical protein; Provisional

Probab=97.61  E-value=0.0093  Score=56.24  Aligned_cols=223  Identities=7%  Similarity=0.044  Sum_probs=104.8

Q ss_pred             eEEEEeCCCCCeeEEeeCCCCcE-EEEEECCCCCEEEEEeCC------CeEEEEEccCCCCceEEEEeecCCCcceEEEE
Q psy15421         78 KLIVWDSYTTNKVHAIPLRSSWV-MTCAYAPSGSFVACGGLD------NICSIYSLKTREGNVRVSRELPGHTGYLSCCR  150 (340)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~i-~~v~~~~~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~  150 (340)
                      .+..||..+.+....-+...... .++ ...++...+.||.+      +.+..||..+.  .+.....++...... ++.
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~-a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n--~W~~~~~m~~~R~~~-~~~  348 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYAS-AIVDNEIIIAGGYNFNNPSLNKVYKINIENK--IHVELPPMIKNRCRF-SLA  348 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEE-EEECCEEEEEcCCCCCCCccceEEEEECCCC--eEeeCCCCcchhhce-eEE
Confidence            46678877655332111111111 122 22366777777754      24566776443  221111111111111 122


Q ss_pred             EcCCCeEEEEeCCC-----eEEEEECCCCceEE--EEecCCCCeEEEEEcCCCCEEEEEeCCC-----------------
Q psy15421        151 FLDDNQIVTSSGDM-----SCALWDIETGQQCA--SFIGHTGDVMSLSLAPDMRTFVSGACDA-----------------  206 (340)
Q Consensus       151 ~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~sg~~dg-----------------  206 (340)
                      ..++..++.|+.++     ++..||..+++-..  .+.........+  .-++..++.|+.++                 
T Consensus       349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~  426 (557)
T PHA02713        349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE  426 (557)
T ss_pred             EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccc
Confidence            22444455666543     47889987653211  111111111122  23577777787653                 


Q ss_pred             ------cEEEEECCCCee--eeEecCCCCCeEEEEEecCCCEEEEEeCCC------cEEEEeCcC-C--cEEEEeecCCc
Q psy15421        207 ------SAKLWDIRDGSC--KQTFPGHESDINAVTFFPNGWAFATGSDDA------TCRLFDIRA-D--QELAMYSHDNI  269 (340)
Q Consensus       207 ------~i~~wd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~------~i~iwd~~~-~--~~~~~~~~~~~  269 (340)
                            .+..||.++++=  +..+.  ......-...-+++.++.|+.++      .+..||..+ .  ..+..+.....
T Consensus       427 ~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~  504 (557)
T PHA02713        427 DTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS  504 (557)
T ss_pred             cccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence                  466677766531  11111  11111111223577788887652      367788775 2  22222221111


Q ss_pred             ccceEEEEEcCCCcEEEEEeCCC--cEEEEeCCCceeeeeeccCC
Q psy15421        270 ICGITSVAFSRSGRLLLAGYDDF--NCNVWDSMKTERAGILAGHD  312 (340)
Q Consensus       270 ~~~i~~~~~s~~~~~l~~g~~d~--~i~iw~~~~~~~~~~~~~h~  312 (340)
                        ....+++  ++++.++|+.++  .+..||..+.+-...-..|.
T Consensus       505 --~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~  545 (557)
T PHA02713        505 --ALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS  545 (557)
T ss_pred             --cceeEEE--CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence              1222222  789999999888  67778766554444444454

>KOG3617|consensus

Probab=97.58  E-value=0.00012  Score=68.60  Aligned_cols=105  Identities=17%  Similarity=0.216  Sum_probs=80.9

Q ss_pred             EEEecCCCEEEEEeC----CCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeee
Q psy15421        232 VTFFPNGWAFATGSD----DATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGI  307 (340)
Q Consensus       232 v~~~~~~~~l~s~s~----d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~  307 (340)
                      ..|+|....||.++-    -|++.||-- ++.+....   .....+++++|+|..-.|+.|=.-|.+.+|...+.+.-..
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPqr~V---t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQRDV---TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEec-CCCCCccc---ccceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence            467887777776653    477877743 22222111   1122367899999988899999999999999877777666


Q ss_pred             eccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        308 LAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       308 ~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      -..|..+|..+.||++|..|+++..-|.|.+|.
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr  129 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWR  129 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEE
Confidence            778999999999999999999999999999993

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.55  E-value=0.042  Score=46.82  Aligned_cols=229  Identities=14%  Similarity=0.102  Sum_probs=125.5

Q ss_pred             CCCCeEEEEeCCCeEEEEeCCC-CCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEE-------
Q psy15421         65 SDSRNLVSASQDGKLIVWDSYT-TNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVS-------  136 (340)
Q Consensus        65 ~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-------  136 (340)
                      ..++.|+.|..+| +.+++... .+.....+  ...|..+...|+-+.|++-+ |+.+.++++..-.......       
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            4577888898888 89998832 22222222  22388888888766665554 4899999987533221000       


Q ss_pred             ----EeecCCCcceEEEE---EcCCCeEEEEeCCCeEEEEECCCC-----ceEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q psy15421        137 ----RELPGHTGYLSCCR---FLDDNQIVTSSGDMSCALWDIETG-----QQCASFIGHTGDVMSLSLAPDMRTFVSGAC  204 (340)
Q Consensus       137 ----~~~~~~~~~v~~~~---~~~~~~l~~~~~d~~v~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~  204 (340)
                          ..+ .....+..++   -..+...+.+.....|.+|.....     +....+ .....+.+++|.  ++.++.|. 
T Consensus        81 ~~~~~~~-~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v~~-  155 (275)
T PF00780_consen   81 RSLPTKL-PETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICVGT-  155 (275)
T ss_pred             ccccccc-cccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEEEe-
Confidence                011 1122233333   112334555566668888887653     233333 345778899998  34566555 


Q ss_pred             CCcEEEEECCCCeeeeEecCC------------CCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccc
Q psy15421        205 DASAKLWDIRDGSCKQTFPGH------------ESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICG  272 (340)
Q Consensus       205 dg~i~~wd~~~~~~~~~~~~h------------~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  272 (340)
                      .....+.|+.++.....+...            ..++..+.. +++.+|++.  |..-.+.|... ++.. .........
T Consensus       156 ~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G-~~~r-~~~i~W~~~  230 (275)
T PF00780_consen  156 SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNG-EPSR-KSTIQWSSA  230 (275)
T ss_pred             CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCC-CcCc-ccEEEcCCc
Confidence            455788899876654333211            122333333 345555543  33444445433 2221 111111223


Q ss_pred             eEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeecc
Q psy15421        273 ITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAG  310 (340)
Q Consensus       273 i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~  310 (340)
                      +.++++.  ..+|++-..+ .|.||++.+++.+..+..
T Consensus       231 p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  231 PQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPL  265 (275)
T ss_pred             hhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEEC
Confidence            5566663  3577766555 599999999988777653

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4640|consensus

Probab=97.53  E-value=0.00066  Score=61.69  Aligned_cols=94  Identities=18%  Similarity=0.143  Sum_probs=75.0

Q ss_pred             CCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeee
Q psy15421        227 SDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAG  306 (340)
Q Consensus       227 ~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~  306 (340)
                      ..+.-+.|+|.-..+|.+..+|.+-+.... .+++..++.++... ..+++|.|||+.||.|..||+|++.|.+++..+.
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v-~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENV-TASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCcc-ceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            457788999998899999999999998887 77888876444322 2499999999999999999999999999887655


Q ss_pred             e-eccCCcceEEEEECC
Q psy15421        307 I-LAGHDNRVSCLGVTE  322 (340)
Q Consensus       307 ~-~~~h~~~i~~~~~s~  322 (340)
                      . ...-+.+|.+.-|++
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            4 223456777777764

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.53  E-value=0.054  Score=47.59  Aligned_cols=267  Identities=18%  Similarity=0.180  Sum_probs=115.4

Q ss_pred             EEcCCCCeEEE-EeCCCe--EEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEe
Q psy15421         62 HWGSDSRNLVS-ASQDGK--LIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRE  138 (340)
Q Consensus        62 ~~s~~~~~l~s-~~~d~~--i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~  138 (340)
                      +|.+||+.|+- +..||.  +.+-|+.+++..+...+..........+|+.+.++-...+..++-.|+.+.+.  +....
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~--~~vy~  119 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE--RVVYE  119 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E--EEEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE--EEEEE
Confidence            56788866554 444655  45558888776554443322222445678888877666667777778776543  23333


Q ss_pred             ecCCCcceEEEEE--cCCCeEEEEeC----C-------------------CeEEEEECCCCceEEEEecCCCCeEEEEEc
Q psy15421        139 LPGHTGYLSCCRF--LDDNQIVTSSG----D-------------------MSCALWDIETGQQCASFIGHTGDVMSLSLA  193 (340)
Q Consensus       139 ~~~~~~~v~~~~~--~~~~~l~~~~~----d-------------------~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~  193 (340)
                      ++.  ..+....|  ..++..+.+..    |                   ..|.--|+.+|+.-. +..-...+..+.|+
T Consensus       120 ~p~--~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~-v~~~~~wlgH~~fs  196 (386)
T PF14583_consen  120 VPD--DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV-VFEDTDWLGHVQFS  196 (386)
T ss_dssp             --T--TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE-EEEESS-EEEEEEE
T ss_pred             CCc--ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE-EEecCccccCcccC
Confidence            332  22221122  22333332211    1                   245556777766433 33344567788899


Q ss_pred             CCCCEEEEEeC----CC-cEEEEECCC-CeeeeEecCCCC--CeEEEEEecCCCEEEE-----EeCCCcEEEEeCcCCcE
Q psy15421        194 PDMRTFVSGAC----DA-SAKLWDIRD-GSCKQTFPGHES--DINAVTFFPNGWAFAT-----GSDDATCRLFDIRADQE  260 (340)
Q Consensus       194 ~~~~~~~sg~~----dg-~i~~wd~~~-~~~~~~~~~h~~--~v~~v~~~~~~~~l~s-----~s~d~~i~iwd~~~~~~  260 (340)
                      |....++.=+.    |. .-|+|-+++ +...+.+..|..  .+.-=-|.|||..+.-     ++.+..|.-+|..+.+.
T Consensus       197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~  276 (386)
T PF14583_consen  197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER  276 (386)
T ss_dssp             TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred             CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence            97655554332    22 236675432 333333332321  1222346788775532     22244566667766544


Q ss_pred             EEEeecCCcccceEEEEEcCCCcEEEEEeCCC----------------cEEEEeCCCceeeeeeccCC---------cce
Q psy15421        261 LAMYSHDNIICGITSVAFSRSGRLLLAGYDDF----------------NCNVWDSMKTERAGILAGHD---------NRV  315 (340)
Q Consensus       261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~----------------~i~iw~~~~~~~~~~~~~h~---------~~i  315 (340)
                      ......+    .-.-+--++||++++-=+.|.                -|++++...+... .+..|.         ..+
T Consensus       277 ~~~~~~p----~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~  351 (386)
T PF14583_consen  277 RRLMEMP----WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQV  351 (386)
T ss_dssp             EEEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE-------BTTBSST
T ss_pred             eEEEeCC----ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcceeecCCCcc
Confidence            3222111    122344478998887522321                3556776655432 222232         111


Q ss_pred             --EEEEECCCCCEEE-EeeCCCcEEe
Q psy15421        316 --SCLGVTEDGMAVA-TGSWDSFLRI  338 (340)
Q Consensus       316 --~~~~~s~d~~~l~-s~s~D~~i~i  338 (340)
                        --..|||||+.++ .+...|...|
T Consensus       352 ~hPhp~FSPDgk~VlF~Sd~~G~~~v  377 (386)
T PF14583_consen  352 THPHPSFSPDGKWVLFRSDMEGPPAV  377 (386)
T ss_dssp             T----EE-TTSSEEEEEE-TTSS-EE
T ss_pred             CCCCCccCCCCCEEEEECCCCCCccE
Confidence              2478999999766 4555665544

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.53  E-value=0.0041  Score=59.75  Aligned_cols=145  Identities=17%  Similarity=0.171  Sum_probs=97.8

Q ss_pred             CCCeEEEE-eCCCeEEEEeCCCCCeeEEeeCCCCc-EEEEEECCCC-------CEEEEEeCCCeEEEEEccCCCCceEEE
Q psy15421         66 DSRNLVSA-SQDGKLIVWDSYTTNKVHAIPLRSSW-VMTCAYAPSG-------SFVACGGLDNICSIYSLKTREGNVRVS  136 (340)
Q Consensus        66 ~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~-i~~v~~~~~~-------~~l~~~~~d~~v~i~~~~~~~~~~~~~  136 (340)
                      +.++|+-- .....|+-.|++.++.+...+.+... |..  +.|+.       ..-+.|-.++.+..||.+....++...
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~  569 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS  569 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence            34454433 45578888999999999998887653 444  44432       344667788888999998754332211


Q ss_pred             E-eecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy15421        137 R-ELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDI  213 (340)
Q Consensus       137 ~-~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~  213 (340)
                      . ..-.......|+.-..+|.++.|+.+|.|++||--..+.-..+.+...+|..|+.+.||+.+++ .++..+.|++.
T Consensus       570 ~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwila-Tc~tyLlLi~t  646 (794)
T PF08553_consen  570 QSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILA-TCKTYLLLIDT  646 (794)
T ss_pred             cccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEE-eecceEEEEEE
Confidence            0 0112233455666667899999999999999995432333345567889999999999998764 44667777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.51  E-value=0.062  Score=47.71  Aligned_cols=257  Identities=14%  Similarity=0.174  Sum_probs=127.2

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeE-EeeC-------CC---------CcEEEEEECCCCCEEEEEeC
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVH-AIPL-------RS---------SWVMTCAYAPSGSFVACGGL  117 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~-------~~---------~~i~~v~~~~~~~~l~~~~~  117 (340)
                      ...+....|+|+|+.++-.. ++.|.+++..++.... +..+       -.         +.-..+.||||+++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            56788999999999988664 5789999876664332 1112       00         11245789999999987654


Q ss_pred             CC-eEEEEEccCCCCceEEEEeecCCC--cceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEE-Ee----cCCCCeE
Q psy15421        118 DN-ICSIYSLKTREGNVRVSRELPGHT--GYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCAS-FI----GHTGDVM  188 (340)
Q Consensus       118 d~-~v~i~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~-~~----~~~~~v~  188 (340)
                      |. .|+.+.+..         ....+.  ..+....+...+ ..    ..-.+.++|+.+++.... ..    .-...+.
T Consensus       121 d~~~v~~~~~~~---------~~~~~~~yp~~~~~~YPk~G~~n----p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~  187 (353)
T PF00930_consen  121 DEREVPEYPLPD---------YSPPDSQYPEVESIRYPKAGDPN----PRVSLFVVDLASGKTTELDPPNSLNPQDYYLT  187 (353)
T ss_dssp             E-TTS-EEEEEE---------ESSSTESS-EEEEEE--BTTS-------EEEEEEEESSSTCCCEE---HHHHTSSEEEE
T ss_pred             CCcCCceEEeec---------cCCccccCCcccccccCCCCCcC----CceEEEEEECCCCcEEEeeeccccCCCccCcc
Confidence            42 233222211         111111  123334443211 11    112466788887764321 11    2334578


Q ss_pred             EEEEcCCCC-EEE-EEeCCC---cEEEEECCCCeeeeEecC-CCC---CeEEEEEe-cCCC-EEEEEeCCCcEEEE--eC
Q psy15421        189 SLSLAPDMR-TFV-SGACDA---SAKLWDIRDGSCKQTFPG-HES---DINAVTFF-PNGW-AFATGSDDATCRLF--DI  255 (340)
Q Consensus       189 ~~~~~~~~~-~~~-sg~~dg---~i~~wd~~~~~~~~~~~~-h~~---~v~~v~~~-~~~~-~l~s~s~d~~i~iw--d~  255 (340)
                      .+.|.+++. +++ .-..+.   .+.++|..++.+...+.. ...   ......+. +++. ++.....||.-+|+  +.
T Consensus       188 ~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~  267 (353)
T PF00930_consen  188 RVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL  267 (353)
T ss_dssp             EEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET
T ss_pred             cceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc
Confidence            899999988 333 233332   345667776654333221 111   12245554 5544 44455567765555  44


Q ss_pred             cCCcEEEEeecCCcccceE-EEEEcCCCcEE-EEEeCC--C--cEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEE
Q psy15421        256 RADQELAMYSHDNIICGIT-SVAFSRSGRLL-LAGYDD--F--NCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVA  328 (340)
Q Consensus       256 ~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l-~~g~~d--~--~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~  328 (340)
                      ..+.. ..+....  ..|. -+.++++++.| .++..+  +  .+..-++..+.....+....+.-..+.|||+|++++
T Consensus       268 ~~~~~-~~lT~G~--~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v  343 (353)
T PF00930_consen  268 DGGKP-RQLTSGD--WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYV  343 (353)
T ss_dssp             TSSEE-EESS-SS--S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred             cccce-eccccCc--eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEE
Confidence            44432 2222222  2353 36778876644 355542  2  344444441233344443333337899999999876

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.49  E-value=0.017  Score=41.01  Aligned_cols=100  Identities=18%  Similarity=0.202  Sum_probs=64.4

Q ss_pred             eEEEEEec---C-CCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCcee
Q psy15421        229 INAVTFFP---N-GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTER  304 (340)
Q Consensus       229 v~~v~~~~---~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~  304 (340)
                      |+++++..   + ...|+.|+.|..|++|+-.  ..+..+...   ..|++++-.+. ..++.|..+|+|-+|+.. .+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~---~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~-~Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET---DKVTSLCSLGG-GRFAYALANGTVGVYDRS-QRL   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc---cceEEEEEcCC-CEEEEEecCCEEEEEeCc-cee
Confidence            55666654   3 2589999999999999764  344444322   23667766655 678999999999999843 222


Q ss_pred             eeeeccCCcceEEEEEC---CCC-CEEEEeeCCCcEE
Q psy15421        305 AGILAGHDNRVSCLGVT---EDG-MAVATGSWDSFLR  337 (340)
Q Consensus       305 ~~~~~~h~~~i~~~~~s---~d~-~~l~s~s~D~~i~  337 (340)
                      -..-..|  .++++.+.   .|| ..|++|-.+|.|-
T Consensus        75 WRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            2222333  35555443   333 3688888888874

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=0.08  Score=47.51  Aligned_cols=258  Identities=14%  Similarity=0.107  Sum_probs=148.8

Q ss_pred             cEEEEEEcCCCCeEE-EEeCCCeEEEEeCCCCCeeEE-eeCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEccCCCCce
Q psy15421         57 KIYAMHWGSDSRNLV-SASQDGKLIVWDSYTTNKVHA-IPLRSSWVMTCAYAPSGS-FVACGGLDNICSIYSLKTREGNV  133 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~-~~~~~~~i~~v~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~  133 (340)
                      ....+.+.+++..+. +-.....+..-+.. ...... .......-..+++++.++ ..++...++.+.+.|..+...  
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~--  108 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV--  108 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce--
Confidence            345566677774333 22222255555554 222111 111112234567777777 455555668899998654321  


Q ss_pred             EEEEeecCCCcceEEEEEcCCC-e-EEEEe--CCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEE-EeCCCcE
Q psy15421        134 RVSRELPGHTGYLSCCRFLDDN-Q-IVTSS--GDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVS-GACDASA  208 (340)
Q Consensus       134 ~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s-g~~dg~i  208 (340)
                       ......+.  .-..+.+.+++ . .++-.  .++.+.+.|..+++.......-.. ...+++.|+++.++. -..++.|
T Consensus       109 -~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~-P~~~a~~p~g~~vyv~~~~~~~v  184 (381)
T COG3391         109 -LGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT-PTGVAVDPDGNKVYVTNSDDNTV  184 (381)
T ss_pred             -eeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC-cceEEECCCCCeEEEEecCCCeE
Confidence             11111222  22234444443 3 34444  378899999998887776433223 389999999996554 4479999


Q ss_pred             EEEECCCCeeee-E---ecCCCCCeEEEEEecCCCEEEEE-eCC--CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCC
Q psy15421        209 KLWDIRDGSCKQ-T---FPGHESDINAVTFFPNGWAFATG-SDD--ATCRLFDIRADQELAMYSHDNIICGITSVAFSRS  281 (340)
Q Consensus       209 ~~wd~~~~~~~~-~---~~~h~~~v~~v~~~~~~~~l~s~-s~d--~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  281 (340)
                      .+.|.+.....+ .   ...-......+.++|+|.++... ..+  +.+...|..+......-...... ....+.++|+
T Consensus       185 ~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~  263 (381)
T COG3391         185 SVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPA  263 (381)
T ss_pred             EEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCC
Confidence            999977665442 1   01112334578999999855443 333  58888888876655431122222 3456899999


Q ss_pred             CcEEEEEeC-CCcEEEEeCCCceeeeeeccCC---cceEEEEECC
Q psy15421        282 GRLLLAGYD-DFNCNVWDSMKTERAGILAGHD---NRVSCLGVTE  322 (340)
Q Consensus       282 ~~~l~~g~~-d~~i~iw~~~~~~~~~~~~~h~---~~i~~~~~s~  322 (340)
                      |+++.+... .+.+.+-|..+...........   ..+..+++.+
T Consensus       264 g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~  308 (381)
T COG3391         264 GKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP  308 (381)
T ss_pred             CCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence            999888744 4789998877766655443322   2344555544

>KOG2395|consensus

Probab=97.41  E-value=0.0036  Score=56.06  Aligned_cols=136  Identities=16%  Similarity=0.201  Sum_probs=94.9

Q ss_pred             EEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC-------EEEEEeCCCcEEEEECCCCee--eeEecCCC-
Q psy15421        157 IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR-------TFVSGACDASAKLWDIRDGSC--KQTFPGHE-  226 (340)
Q Consensus       157 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~sg~~dg~i~~wd~~~~~~--~~~~~~h~-  226 (340)
                      |..+.....+.-.|++.|+.+....-+.. |.-+.+.|+.+       .-+.|-.|..|.-||.|-...  +...++|. 
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            33455566788889999999888877666 77777777643       234688899999999984322  22223332 


Q ss_pred             ---CCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEE
Q psy15421        227 ---SDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNV  296 (340)
Q Consensus       227 ---~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~i  296 (340)
                         ....|.+-..+| ++|.||.+|.||+||-. +... ....+....+|.-+..+.+|++|++.+....+.+
T Consensus       428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~~A-KTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi  497 (644)
T KOG2395|consen  428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDRI-GRRA-KTALPGLGDAIKHVDVTADGKWILATCKTYLLLI  497 (644)
T ss_pred             ccccccceeeecCCc-eEEEeecCCcEEeehhh-hhhh-hhcccccCCceeeEEeeccCcEEEEecccEEEEE
Confidence               245677766666 89999999999999963 2221 1223455667999999999999988777665444

>KOG2395|consensus

Probab=97.41  E-value=0.0039  Score=55.83  Aligned_cols=131  Identities=19%  Similarity=0.236  Sum_probs=90.3

Q ss_pred             EEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCC-------EEEEEeCCCcEEEEeCcCCcE--EEE-eecC-
Q psy15421        199 FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGW-------AFATGSDDATCRLFDIRADQE--LAM-YSHD-  267 (340)
Q Consensus       199 ~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~-------~l~s~s~d~~i~iwd~~~~~~--~~~-~~~~-  267 (340)
                      +.++.....++--|++.|+.+..++-|.. |+-+.+.|+.+       .-+.|-.|..|.-||.+-...  +.. -.+. 
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            34677778888889999999999886654 77788888643       235677789999999883222  111 1111 


Q ss_pred             CcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEee
Q psy15421        268 NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGS  331 (340)
Q Consensus       268 ~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s  331 (340)
                      ......+|.+-..+ -++|+|+.+|.||+|+.........+.+-..+|..+..+.||.+|+...
T Consensus       428 ~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  428 STKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC  490 (644)
T ss_pred             ccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence            01112345444444 4889999999999999733333445778889999999999999877544

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.37  E-value=0.064  Score=44.69  Aligned_cols=192  Identities=14%  Similarity=0.184  Sum_probs=108.4

Q ss_pred             EeecCCCcceEEEEEcCC-CeEEEEe-CCCeEEEEECCCCceEEEEecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy15421        137 RELPGHTGYLSCCRFLDD-NQIVTSS-GDMSCALWDIETGQQCASFIGH-TGDVMSLSLAPDMRTFVSGACDASAKLWDI  213 (340)
Q Consensus       137 ~~~~~~~~~v~~~~~~~~-~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~  213 (340)
                      ..+++-...++.+.|.++ +.|++.. ..+.|.-++.. |+.+.++.-. .+..-.+++.-++.++++--.++.+.++++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            345555556888999764 6666654 47778888874 6777665432 345778888877877776667999999988


Q ss_pred             CCCe------eeeEec-----CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcC---CcEEEEee------cCCcccce
Q psy15421        214 RDGS------CKQTFP-----GHESDINAVTFFPNGWAFATGSDDATCRLFDIRA---DQELAMYS------HDNIICGI  273 (340)
Q Consensus       214 ~~~~------~~~~~~-----~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~---~~~~~~~~------~~~~~~~i  273 (340)
                      ....      ....++     .+...+-.++|+|.+..|..+-......+|.+..   ...+....      .......+
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            3321      111121     2445688999999888887777777777777653   21211111      11122347


Q ss_pred             EEEEEcCC-CcEEEEEeCCCcEEEEeCCCceeeeeec--c--C-----CcceEEEEECCCCCEEEEe
Q psy15421        274 TSVAFSRS-GRLLLAGYDDFNCNVWDSMKTERAGILA--G--H-----DNRVSCLGVTEDGMAVATG  330 (340)
Q Consensus       274 ~~~~~s~~-~~~l~~g~~d~~i~iw~~~~~~~~~~~~--~--h-----~~~i~~~~~s~d~~~l~s~  330 (340)
                      .++.++|. +++++....+..+..+| .+++.+..+.  .  |     -..--.++|.++|.+.+++
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            88999986 67778888889999998 6666655432  1  1     1235689999999766654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=0.1  Score=46.77  Aligned_cols=245  Identities=19%  Similarity=0.163  Sum_probs=141.2

Q ss_pred             EEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeC-CCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC-CC-
Q psy15421         79 LIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGL-DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD-DN-  155 (340)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-  155 (340)
                      +.+++..+.+....+..+. ....+.+.+++..+..... .+.+...+.  . .. ........-...-..+...+ .. 
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~--~-~n-~~~~~~~~g~~~p~~i~v~~~~~~   87 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDA--T-SN-TVTQSLSVGGVYPAGVAVNPAGNK   87 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccc--c-cc-eeeeeccCCCccccceeeCCCCCe
Confidence            4455544444433444333 3456778888855444332 223333332  2 11 11111111101111222222 33 


Q ss_pred             eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeeeeEecCCCCCeEEE
Q psy15421        156 QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC---DASAKLWDIRDGSCKQTFPGHESDINAV  232 (340)
Q Consensus       156 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~---dg~i~~wd~~~~~~~~~~~~h~~~v~~v  232 (340)
                      .++....+..|.+.|..+.+....... ......++++|+++.++.+..   ++++.+.|..+++.......-..+ ..+
T Consensus        88 vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~  165 (381)
T COG3391          88 VYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGV  165 (381)
T ss_pred             EEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceE
Confidence            355555678999999877665544432 225778999999977665544   799999999888877765433334 789


Q ss_pred             EEecCCCEEE-EEeCCCcEEEEeCcCCcEEE-Eee-cCCcccceEEEEEcCCCcEEEEEeCC---CcEEEEeCCCceeee
Q psy15421        233 TFFPNGWAFA-TGSDDATCRLFDIRADQELA-MYS-HDNIICGITSVAFSRSGRLLLAGYDD---FNCNVWDSMKTERAG  306 (340)
Q Consensus       233 ~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~-~~~-~~~~~~~i~~~~~s~~~~~l~~g~~d---~~i~iw~~~~~~~~~  306 (340)
                      +++|+|..+. +-..++.|.+.|........ .-. ..........+.++|+|.++.+....   +.+...|..+.....
T Consensus       166 a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~  245 (381)
T COG3391         166 AVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA  245 (381)
T ss_pred             EECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence            9999998554 44578999999976554332 100 01112234678999999966654443   588888877766555


Q ss_pred             e-eccCCcceEEEEECCCCCEEEEe
Q psy15421        307 I-LAGHDNRVSCLGVTEDGMAVATG  330 (340)
Q Consensus       307 ~-~~~h~~~i~~~~~s~d~~~l~s~  330 (340)
                      . +..-...-..+.++|+|..+...
T Consensus       246 ~~~~~~~~~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         246 TDLPVGSGAPRGVAVDPAGKAAYVA  270 (381)
T ss_pred             eccccccCCCCceeECCCCCEEEEE
Confidence            4 21111144567889999877765

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.33  E-value=0.071  Score=44.41  Aligned_cols=195  Identities=15%  Similarity=0.235  Sum_probs=106.1

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEE-EeCCCeEEEEeCCCCCeeEEeeCCC-CcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVS-ASQDGKLIVWDSYTTNKVHAIPLRS-SWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~-~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      .+.+.|=.+.+..++|+|+.+.|++ ....+.|...+. +++.+..++... ...-.|++.-++.|+++.-.++.+.+++
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            4677777778999999998765554 456777877785 577777776543 4467888888888888776788888888


Q ss_pred             ccCCCCceEE----EEe--ec-CCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCC---CceEEEE--e------cCCCC
Q psy15421        126 LKTREGNVRV----SRE--LP-GHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIET---GQQCASF--I------GHTGD  186 (340)
Q Consensus       126 ~~~~~~~~~~----~~~--~~-~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~---~~~~~~~--~------~~~~~  186 (340)
                      +.........    ...  +. .+...+-.++|.+. +.|+.+-...-..+|.+..   ...+...  .      .....
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence            8443222111    111  11 23345677888654 5677666655566666643   2111111  1      12345


Q ss_pred             eEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeeeeEec--C--CC-----CCeEEEEEecCCCEEEEE
Q psy15421        187 VMSLSLAPDMRT-FVSGACDASAKLWDIRDGSCKQTFP--G--HE-----SDINAVTFFPNGWAFATG  244 (340)
Q Consensus       187 v~~~~~~~~~~~-~~sg~~dg~i~~wd~~~~~~~~~~~--~--h~-----~~v~~v~~~~~~~~l~s~  244 (340)
                      +.++.++|.... ++-......|..+| .+|+.+..+.  .  |.     ...-.|+|.++|+.++++
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            789999997654 44566678888898 5677654432  1  11     245689999998665554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.30  E-value=0.11  Score=46.52  Aligned_cols=200  Identities=12%  Similarity=0.080  Sum_probs=106.2

Q ss_pred             eEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeC--------CCCcEEEEEECC-----CC--
Q psy15421         45 MRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPL--------RSSWVMTCAYAP-----SG--  109 (340)
Q Consensus        45 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~~i~~v~~~~-----~~--  109 (340)
                      +.....+...+++|++++.| |=-+++.|..+|.+.|.|......++....        ....+.++.|+.     |+  
T Consensus        76 f~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   76 FLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             EEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             cCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence            34445566668999999986 555889999999999999976665554321        224577777752     33  


Q ss_pred             -CEEEEEeCCCeEEEEEccC-CCCceEEE--EeecCCCcceEEEE-EcC-----------------C----CeEEEEeCC
Q psy15421        110 -SFVACGGLDNICSIYSLKT-REGNVRVS--RELPGHTGYLSCCR-FLD-----------------D----NQIVTSSGD  163 (340)
Q Consensus       110 -~~l~~~~~d~~v~i~~~~~-~~~~~~~~--~~~~~~~~~v~~~~-~~~-----------------~----~~l~~~~~d  163 (340)
                       -.+++|...|.+.+|.+.. ..+.....  .....+.+.+..+. +..                 .    ..++...++
T Consensus       155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe  234 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE  234 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred             ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence             4788899999999998863 22322211  11112334333322 211                 0    124556678


Q ss_pred             CeEEEEECCCCceEEEEecCCCCeEEEEEc-----CCCCEEEEEeCCCcEEEEECCCCeeeeEecCCC----CCeEEEEE
Q psy15421        164 MSCALWDIETGQQCASFIGHTGDVMSLSLA-----PDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE----SDINAVTF  234 (340)
Q Consensus       164 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~----~~v~~v~~  234 (340)
                      ..++++.+.+.+.........-.+..+.+.     ..+..|++-..+|.|+++.+..-+.+..++-+.    ..+....+
T Consensus       235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi  314 (395)
T PF08596_consen  235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI  314 (395)
T ss_dssp             SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred             cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence            899999998877665555221223334442     245667788899999999998766555554321    12234455


Q ss_pred             ecCCCEEEEEe
Q psy15421        235 FPNGWAFATGS  245 (340)
Q Consensus       235 ~~~~~~l~s~s  245 (340)
                      +++|..++-.+
T Consensus       315 s~~Gdi~~~~g  325 (395)
T PF08596_consen  315 SRNGDIFYWTG  325 (395)
T ss_dssp             -TTS-EEEE-S
T ss_pred             CCCCCEEEEeC
Confidence            66666554443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4441|consensus

Probab=97.18  E-value=0.084  Score=49.89  Aligned_cols=217  Identities=17%  Similarity=0.155  Sum_probs=105.6

Q ss_pred             CCCeEEEEeCC------CeEEEEeCCCCCeeEEeeCCCCc-EEEEEECCCCCEEEEEeCC------CeEEEEEccCCCCc
Q psy15421         66 DSRNLVSASQD------GKLIVWDSYTTNKVHAIPLRSSW-VMTCAYAPSGSFVACGGLD------NICSIYSLKTREGN  132 (340)
Q Consensus        66 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~-i~~v~~~~~~~~l~~~~~d------~~v~i~~~~~~~~~  132 (340)
                      .+..++.||.+      ..+..+|..+.......+..... -.+++ ..++...++||.+      +.+-.||.....  
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~-~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--  360 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVA-VLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ--  360 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEE-EECCEEEEEccccCCCcccceEEEecCCCCc--
Confidence            45566777776      35778888776544333222221 22222 3356778889888      245566655432  


Q ss_pred             eEEEEeecCCCcceEEEEEcCCCeEEEEeCCC-----eEEEEECCCCceEEEEecCCCCeEEEE-EcCCCCEEEEEeCCC
Q psy15421        133 VRVSRELPGHTGYLSCCRFLDDNQIVTSSGDM-----SCALWDIETGQQCASFIGHTGDVMSLS-LAPDMRTFVSGACDA  206 (340)
Q Consensus       133 ~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~sg~~dg  206 (340)
                      +.....+....... .+....+..++.|+.||     ++..||..+.+-...- .........+ ..-++..+++|+.++
T Consensus       361 W~~~a~M~~~R~~~-~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~gv~~~~g~iYi~GG~~~  438 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDF-GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGHGVAVLGGKLYIIGGGDG  438 (571)
T ss_pred             eeccCCccCccccc-eeEEECCEEEEEeccccccccccEEEecCCCCcccccC-CCCcceeeeEEEEECCEEEEEcCcCC
Confidence            22111111111111 11122344566777775     4778888765421111 0111122221 223577778888554


Q ss_pred             ------cEEEEECCCCeeee--EecCCCCCeEEEEEecCCCEEEEEeCCCc-----EEEEeCcCCcEEEE--eecCCccc
Q psy15421        207 ------SAKLWDIRDGSCKQ--TFPGHESDINAVTFFPNGWAFATGSDDAT-----CRLFDIRADQELAM--YSHDNIIC  271 (340)
Q Consensus       207 ------~i~~wd~~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~s~d~~-----i~iwd~~~~~~~~~--~~~~~~~~  271 (340)
                            ++..||..+++-..  .+..... -..++. -++..++.||.|+.     +..||..+.+-...  ....... 
T Consensus       439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~-~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~-  515 (571)
T KOG4441|consen  439 SSNCLNSVECYDPETNTWTLIAPMNTRRS-GFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA-  515 (571)
T ss_pred             CccccceEEEEcCCCCceeecCCcccccc-cceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc-
Confidence                  45667776654211  1111101 112332 35778899988873     66777765432211  1111111 


Q ss_pred             ceEEEEEcCCCcEEEEEeCCCc
Q psy15421        272 GITSVAFSRSGRLLLAGYDDFN  293 (340)
Q Consensus       272 ~i~~~~~s~~~~~l~~g~~d~~  293 (340)
                       +..+.  -+++..++|+.|+.
T Consensus       516 -~g~~~--~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  516 -VGVVV--LGGKLYAVGGFDGN  534 (571)
T ss_pred             -ccEEE--ECCEEEEEecccCc
Confidence             11111  26788888988864

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.17  E-value=0.13  Score=44.38  Aligned_cols=220  Identities=15%  Similarity=0.061  Sum_probs=114.3

Q ss_pred             EEcCCCC-eEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEee-
Q psy15421         62 HWGSDSR-NLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSREL-  139 (340)
Q Consensus        62 ~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-  139 (340)
                      .|.++.. ++.+--..+.|.-|+..+++.. .+..... +.++..-..+..|+++...  +.+++...+. ........ 
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~-~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~~-~~t~~~~~~  105 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGG-FSSGALIDAGGRLIACEHG--VRLLDPDTGG-KITLLAEPE  105 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCC-cccceeecCCCeEEEEccc--cEEEeccCCc-eeEEecccc
Confidence            3556665 5556667888889988766432 2222222 2333323333344433333  3445543222 11111111 


Q ss_pred             cCCC-cceEEEEEcCCCeEEEEeCC------------CeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEe-CC
Q psy15421        140 PGHT-GYLSCCRFLDDNQIVTSSGD------------MSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGA-CD  205 (340)
Q Consensus       140 ~~~~-~~v~~~~~~~~~~l~~~~~d------------~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~-~d  205 (340)
                      .+.. ...+.....+++.+..+...            |.+..+|. .+.....+..+-...+.++|+||++.++..- ..
T Consensus       106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~  184 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA  184 (307)
T ss_pred             CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence            1111 12222233344444333222            23333343 3444444444455567999999997766554 45


Q ss_pred             CcEEEEECCC--Ce-----eeeEecCCCCCeEEEEEecCCCEEEEEeCCC-cEEEEeCcCCcEEEEeecCCcccceEEEE
Q psy15421        206 ASAKLWDIRD--GS-----CKQTFPGHESDINAVTFFPNGWAFATGSDDA-TCRLFDIRADQELAMYSHDNIICGITSVA  277 (340)
Q Consensus       206 g~i~~wd~~~--~~-----~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  277 (340)
                      +.|.-|++..  +.     ....+....+..-.++...+|.+.+++...| .|..|+.. ++.+..+..+.  ..+++++
T Consensus       185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~  261 (307)
T COG3386         185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNPA  261 (307)
T ss_pred             CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC--CCCccce
Confidence            8888887752  11     1112222345556778888898886666555 89999988 66666554432  2367777


Q ss_pred             E-cCCCcEEEEEeC
Q psy15421        278 F-SRSGRLLLAGYD  290 (340)
Q Consensus       278 ~-s~~~~~l~~g~~  290 (340)
                      | .|+.+.|.+.+.
T Consensus       262 FgG~~~~~L~iTs~  275 (307)
T COG3386         262 FGGPDLNTLYITSA  275 (307)
T ss_pred             EeCCCcCEEEEEec
Confidence            7 455565555443

>PHA02713 hypothetical protein; Provisional

Probab=97.16  E-value=0.072  Score=50.32  Aligned_cols=172  Identities=12%  Similarity=0.124  Sum_probs=86.3

Q ss_pred             CCCeEEEEeCC------CeEEEEECCCCceE--EEEecCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCee-
Q psy15421        153 DDNQIVTSSGD------MSCALWDIETGQQC--ASFIGHTGDVMSLSLAPDMRTFVSGACDA-----SAKLWDIRDGSC-  218 (340)
Q Consensus       153 ~~~~l~~~~~d------~~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~sg~~dg-----~i~~wd~~~~~~-  218 (340)
                      ++..++.|+.+      ..+..||+.++.-.  ..+....... +++ .-+++.++.|+.++     ++..||..+++= 
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            44455566543      34778888776421  1111111111 222 23567778888764     477889876531 


Q ss_pred             -eeEecCCCCCeEEEEEecCCCEEEEEeCCC-----------------------cEEEEeCcCCc--EEEEeecCCcccc
Q psy15421        219 -KQTFPGHESDINAVTFFPNGWAFATGSDDA-----------------------TCRLFDIRADQ--ELAMYSHDNIICG  272 (340)
Q Consensus       219 -~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~-----------------------~i~iwd~~~~~--~~~~~~~~~~~~~  272 (340)
                       +..++...... +++ .-+|..++.||.++                       .+..||..+.+  .+..+......  
T Consensus       381 ~~~~mp~~r~~~-~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~--  456 (557)
T PHA02713        381 MLPDMPIALSSY-GMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR--  456 (557)
T ss_pred             ECCCCCcccccc-cEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc--
Confidence             11111111111 122 23678888888653                       36667765432  11111111111  


Q ss_pred             eEEEEEcCCCcEEEEEeCC------CcEEEEeCCC---ceeeeeeccCCcceEEEEECCCCCEEEEeeCCC
Q psy15421        273 ITSVAFSRSGRLLLAGYDD------FNCNVWDSMK---TERAGILAGHDNRVSCLGVTEDGMAVATGSWDS  334 (340)
Q Consensus       273 i~~~~~s~~~~~l~~g~~d------~~i~iw~~~~---~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~  334 (340)
                      . +++ .-++++.+.|+.+      ..+..||..+   +..+..+.........+++  +|...+.|+.|+
T Consensus       457 ~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~  523 (557)
T PHA02713        457 P-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYES  523 (557)
T ss_pred             C-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecc
Confidence            1 111 2257888888754      2467788654   4445555443333333333  677888999887

>KOG2079|consensus

Probab=97.13  E-value=0.0017  Score=62.61  Aligned_cols=98  Identities=23%  Similarity=0.343  Sum_probs=73.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceE
Q psy15421        237 NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVS  316 (340)
Q Consensus       237 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~  316 (340)
                      .+..++.|++-|.+-..|+...-.. ....+....+|++++|+.+|++++.|-.+|.|.+||....+....+..|..+.+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~-~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGP-LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccch-hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            3557888999999999988753111 111233446799999999999999999999999999998888887777766544


Q ss_pred             E---EEECCCCCEEEEeeCCCc
Q psy15421        317 C---LGVTEDGMAVATGSWDSF  335 (340)
Q Consensus       317 ~---~~~s~d~~~l~s~s~D~~  335 (340)
                      .   +.+..++..++++...|.
T Consensus       177 ~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccCCCc
Confidence            4   456667777888777775

>KOG2079|consensus

Probab=97.10  E-value=0.01  Score=57.63  Aligned_cols=104  Identities=16%  Similarity=0.212  Sum_probs=63.9

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCe-eEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCc
Q psy15421         66 DSRNLVSASQDGKLIVWDSYTTNK-VHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTG  144 (340)
Q Consensus        66 ~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~  144 (340)
                      .+..++.|++-|.+-..|....-. .+.-.....+|.+++|+.+|+.++.|-.+|.|.+||+..+..-..+......+.+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            344677777778888777654211 1222223568999999999999999999999999999764321111111112233


Q ss_pred             ceEEEEEcCCCeEEEEeCCCeEEEEEC
Q psy15421        145 YLSCCRFLDDNQIVTSSGDMSCALWDI  171 (340)
Q Consensus       145 ~v~~~~~~~~~~l~~~~~d~~v~iwd~  171 (340)
                      .+.......+..++++...|.  +|.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            333333334446777776776  5554

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.10  E-value=0.18  Score=47.84  Aligned_cols=196  Identities=12%  Similarity=0.096  Sum_probs=103.6

Q ss_pred             CcEEEEEEcCCCCeEEEEe------CCCeEEEE--eCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEc
Q psy15421         56 AKIYAMHWGSDSRNLVSAS------QDGKLIVW--DSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI-CSIYSL  126 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~------~d~~i~iw--d~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~-v~i~~~  126 (340)
                      ..+.+.+++||++.++..-      .|..-.||  +.. +.......+  .....-.|+|+|..+.+....+. +++.. 
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~-  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR-  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEec-
Confidence            3567888999999877655      34444555  432 222111222  12455678898877765542211 11110 


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDA  206 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg  206 (340)
                                                       ....+.+.+.++..++...   ...+.|..+.|+|||..++.-. +|
T Consensus       426 ---------------------------------~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g  468 (591)
T PRK13616        426 ---------------------------------DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GG  468 (591)
T ss_pred             ---------------------------------cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CC
Confidence                                             1123344444555544322   3345699999999999877544 46


Q ss_pred             cEEE---EECCCCeee----eEe-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC--cCCcEEEEeecCCcccceEEE
Q psy15421        207 SAKL---WDIRDGSCK----QTF-PGHESDINAVTFFPNGWAFATGSDDATCRLFDI--RADQELAMYSHDNIICGITSV  276 (340)
Q Consensus       207 ~i~~---wd~~~~~~~----~~~-~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~--~~~~~~~~~~~~~~~~~i~~~  276 (340)
                      +|.+   -....|...    ..+ .+-...+..+.|.+++.. +.+..++.-.+|-+  ..... ..+...+...++.++
T Consensus       469 ~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~-~~~~~~n~~~~v~~v  546 (591)
T PRK13616        469 KVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVNLDGSNS-DALPSRNLSAPVVAV  546 (591)
T ss_pred             EEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEecCCccc-cccCCCCccCceEEE
Confidence            7766   443444311    112 223334678999998874 45555554445543  32221 111233334456677


Q ss_pred             EEcCCCcEEEEEeCCCcEEE
Q psy15421        277 AFSRSGRLLLAGYDDFNCNV  296 (340)
Q Consensus       277 ~~s~~~~~l~~g~~d~~i~i  296 (340)
                      +-+++  .+.....++.+.+
T Consensus       547 aa~~~--~iyv~~~~g~~~l  564 (591)
T PRK13616        547 AASPS--TVYVTDARAVLQL  564 (591)
T ss_pred             ecCCc--eEEEEcCCceEEe
Confidence            76763  3445566664433

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.06  E-value=0.17  Score=43.57  Aligned_cols=154  Identities=12%  Similarity=0.114  Sum_probs=77.5

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcC-CcE
Q psy15421        182 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRA-DQE  260 (340)
Q Consensus       182 ~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~-~~~  260 (340)
                      ...+.+..+.-+++++++++++.-....-||-....-...-..-..+|..+.|.|++...+.+ ..|.|++=+... ...
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET  220 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence            344668888889999988877666666788754321111112235689999999998765544 788888876221 111


Q ss_pred             EEE--eecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeee---eccCCcceEEEEECCCCCEEEEeeCCCc
Q psy15421        261 LAM--YSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGI---LAGHDNRVSCLGVTEDGMAVATGSWDSF  335 (340)
Q Consensus       261 ~~~--~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~---~~~h~~~i~~~~~s~d~~~l~s~s~D~~  335 (340)
                      ...  .........+..++|.+++...++|+.. ++.+ ....++.-..   ...-....+.+.|.++.+-++-| .||.
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~  297 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGV  297 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEESTT--EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTE
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeCCc-cEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcE
Confidence            111  1111222347899999998888876654 3332 2233332222   22334567888887666555544 5777


Q ss_pred             EEec
Q psy15421        336 LRIW  339 (340)
Q Consensus       336 i~iW  339 (340)
                      |.-|
T Consensus       298 ll~~  301 (302)
T PF14870_consen  298 LLRY  301 (302)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6655

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.04  E-value=0.04  Score=52.11  Aligned_cols=150  Identities=17%  Similarity=0.142  Sum_probs=81.9

Q ss_pred             CCeEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCC-CcEEEEeC
Q psy15421        185 GDVMSLSLAPDMRTFVSGA------CDA--SAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDD-ATCRLFDI  255 (340)
Q Consensus       185 ~~v~~~~~~~~~~~~~sg~------~dg--~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d-~~i~iwd~  255 (340)
                      ..+.+.+++|+++.++...      .|.  .|.+++.. +.......+.  ....-.|+|+|..+++.+.. ..+++.+.
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence            3577899999999876544      244  44444542 2222222332  36778899998877776533 22333322


Q ss_pred             cCCcEEEEeecC------CcccceEEEEEcCCCcEEEEEeCCCcEEE---EeCCCcee-e---eeecc-CCcceEEEEEC
Q psy15421        256 RADQELAMYSHD------NIICGITSVAFSRSGRLLLAGYDDFNCNV---WDSMKTER-A---GILAG-HDNRVSCLGVT  321 (340)
Q Consensus       256 ~~~~~~~~~~~~------~~~~~i~~~~~s~~~~~l~~g~~d~~i~i---w~~~~~~~-~---~~~~~-h~~~i~~~~~s  321 (340)
                      .....+......      .....|..+.|||||+.++.-. ++.|.+   -....++. +   ..+.. -...+..+.|.
T Consensus       427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~  505 (591)
T PRK13616        427 PATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR  505 (591)
T ss_pred             CCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence            211122111100      1123599999999999988765 466666   33233331 1   11222 22346889999


Q ss_pred             CCCCEEEEeeCCCcEEec
Q psy15421        322 EDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       322 ~d~~~l~s~s~D~~i~iW  339 (340)
                      +++.+++ +..++...+|
T Consensus       506 ~~~~L~V-~~~~~~~~v~  522 (591)
T PRK13616        506 TGDSLVV-GRSDPEHPVW  522 (591)
T ss_pred             cCCEEEE-EecCCCCceE
Confidence            9998554 4444443344

>KOG2444|consensus

Probab=97.02  E-value=0.0029  Score=50.60  Aligned_cols=104  Identities=9%  Similarity=0.112  Sum_probs=64.1

Q ss_pred             CCeEEEEeCCCeEEEEECCCC-ceEEEEecCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCC-CCeE
Q psy15421        154 DNQIVTSSGDMSCALWDIETG-QQCASFIGHTGDVM-SLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE-SDIN  230 (340)
Q Consensus       154 ~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~-~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~-~~v~  230 (340)
                      +..++.|+.+|.|.+|..... +....+..-...+. .+..-.++.+..+++.||.|+.|++.-++.+...-.|. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            456888999999999987621 11111111111221 22222345577889999999999998877666666666 4555


Q ss_pred             EEEEecCCCEEEEE--eCCCcEEEEeCcC
Q psy15421        231 AVTFFPNGWAFATG--SDDATCRLFDIRA  257 (340)
Q Consensus       231 ~v~~~~~~~~l~s~--s~d~~i~iwd~~~  257 (340)
                      .......++.++..  |.|..++.|++..
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchhh
Confidence            55555555566665  6666666666653

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.01  E-value=0.066  Score=48.50  Aligned_cols=188  Identities=19%  Similarity=0.182  Sum_probs=102.3

Q ss_pred             EecCccCcEEEEEEcCCCCeEEEEe---CC-CeEEEEeCCCCCeeEEe--eCCCCcEEEEEECCCCCEEEE-EeCCCeEE
Q psy15421         50 TLRGHLAKIYAMHWGSDSRNLVSAS---QD-GKLIVWDSYTTNKVHAI--PLRSSWVMTCAYAPSGSFVAC-GGLDNICS  122 (340)
Q Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~~---~d-~~i~iwd~~~~~~~~~~--~~~~~~i~~v~~~~~~~~l~~-~~~d~~v~  122 (340)
                      .+.--...+..-.|+|+++.++-.+   .. ..+.++|+.+++.....  .++.   ..-+|+|||+.++. ...|+...
T Consensus       187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~  263 (425)
T COG0823         187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPD  263 (425)
T ss_pred             EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCcc
Confidence            3333345677778999988765442   22 46889999887754433  3333   34469999987654 55667766


Q ss_pred             EEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEE-eCCCe--EEEEECCCCceEEEEecCCCCeEEEEEcCCCCE
Q psy15421        123 IYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTS-SGDMS--CALWDIETGQQCASFIGHTGDVMSLSLAPDMRT  198 (340)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~d~~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  198 (340)
                      +|-+..............+...   .=.|++++ .++.. +..|.  |.+++++.++. ..+....+.-..-.++||+++
T Consensus       264 iy~~dl~~~~~~~Lt~~~gi~~---~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~  339 (425)
T COG0823         264 IYLMDLDGKNLPRLTNGFGINT---SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDK  339 (425)
T ss_pred             EEEEcCCCCcceecccCCcccc---CccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCE
Confidence            6655443332211111122111   12245554 44433 33444  66677776554 333333333337778999998


Q ss_pred             EEEEeC-CCc--EEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEe
Q psy15421        199 FVSGAC-DAS--AKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGS  245 (340)
Q Consensus       199 ~~sg~~-dg~--i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s  245 (340)
                      ++..+. +|.  |.+.|+.++...+.+. +......-.+.|+++.+...+
T Consensus       340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         340 IVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             EEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence            886553 455  5666665554333332 222233445667776655443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.98  E-value=0.13  Score=43.25  Aligned_cols=144  Identities=15%  Similarity=0.161  Sum_probs=86.0

Q ss_pred             CeEEEEEcCCCCEEEEEe---CCCcEEEEECCCCeeeeE-ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe-CcCCcE
Q psy15421        186 DVMSLSLAPDMRTFVSGA---CDASAKLWDIRDGSCKQT-FPGHESDINAVTFFPNGWAFATGSDDATCRLFD-IRADQE  260 (340)
Q Consensus       186 ~v~~~~~~~~~~~~~sg~---~dg~i~~wd~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd-~~~~~~  260 (340)
                      .+.+.+++++++.++...   ....+.++..  +..... +.+  ..+..-.|++++...+....+...+++. ...+..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            578899999998776544   3344444443  322222 232  3677788999988877777677777763 222221


Q ss_pred             -EEEeecCCcccceEEEEEcCCCcEEEEEe---CCCcEEEEeCC---Cc------eeeeeeccCCcceEEEEECCCCCEE
Q psy15421        261 -LAMYSHDNIICGITSVAFSRSGRLLLAGY---DDFNCNVWDSM---KT------ERAGILAGHDNRVSCLGVTEDGMAV  327 (340)
Q Consensus       261 -~~~~~~~~~~~~i~~~~~s~~~~~l~~g~---~d~~i~iw~~~---~~------~~~~~~~~h~~~i~~~~~s~d~~~l  327 (340)
                       ............|.++.+||||..+|.-.   .++.+.+--+.   .+      ............+..++|.+++.++
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~  180 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV  180 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence             11111111111699999999999888755   34666655321   22      1111222335688999999999877


Q ss_pred             EEeeCC
Q psy15421        328 ATGSWD  333 (340)
Q Consensus       328 ~s~s~D  333 (340)
                      +.+...
T Consensus       181 V~~~~~  186 (253)
T PF10647_consen  181 VLGRSA  186 (253)
T ss_pred             EEeCCC
Confidence            765543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.93  E-value=0.3  Score=44.38  Aligned_cols=243  Identities=15%  Similarity=0.122  Sum_probs=117.8

Q ss_pred             EEEEEEcCCCCeEEEE-eCC----CeEEEEeCCCCCeeEEe-eCCCCcEEEEEECCCCCEEEEEeCCC-----------e
Q psy15421         58 IYAMHWGSDSRNLVSA-SQD----GKLIVWDSYTTNKVHAI-PLRSSWVMTCAYAPSGSFVACGGLDN-----------I  120 (340)
Q Consensus        58 v~~~~~s~~~~~l~s~-~~d----~~i~iwd~~~~~~~~~~-~~~~~~i~~v~~~~~~~~l~~~~~d~-----------~  120 (340)
                      +....++||+++++-+ +..    .++++.|+.+++.+... ..  ..-..+.|.++++.|+....+.           .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            3467889999987733 333    44999999998765422 21  1112389999988776665433           3


Q ss_pred             EEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEE-EEeC--C-CeEEEEECCCC----ceEEEEecCCCCeEEEE
Q psy15421        121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIV-TSSG--D-MSCALWDIETG----QQCASFIGHTGDVMSLS  191 (340)
Q Consensus       121 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~--d-~~v~iwd~~~~----~~~~~~~~~~~~v~~~~  191 (340)
                      |..|.+.+....-......+........+..+.++ .++ ....  + ..+.+.++..+    .....+......+....
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence            56666655433312222222222213334445554 333 2332  3 45777787764    23344444333333322


Q ss_pred             EcCCCCEEEEE---eCCCcEEEEECCCCee---eeEecCCCCC--eEEEEEecCCCEEEEEeCCCc--EEEEeCcCCcEE
Q psy15421        192 LAPDMRTFVSG---ACDASAKLWDIRDGSC---KQTFPGHESD--INAVTFFPNGWAFATGSDDAT--CRLFDIRADQEL  261 (340)
Q Consensus       192 ~~~~~~~~~sg---~~dg~i~~wd~~~~~~---~~~~~~h~~~--v~~v~~~~~~~~l~s~s~d~~--i~iwd~~~~~~~  261 (340)
                      -+.++.+++..   ...+.|.-.++.....   ...+..+...  +..+.... +..++....++.  |++++...+...
T Consensus       284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~Lvl~~~~~~~~~l~v~~~~~~~~~  362 (414)
T PF02897_consen  284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK-DYLVLSYRENGSSRLRVYDLDDGKES  362 (414)
T ss_dssp             EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET-TEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred             EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC-CEEEEEEEECCccEEEEEECCCCcEE
Confidence            23344444432   3356777777776642   2244455553  44554432 234444444544  678888723333


Q ss_pred             EEeecCCcccceEEEEEcCCCcEEEEEeC----CCcEEEEeCCCcee
Q psy15421        262 AMYSHDNIICGITSVAFSRSGRLLLAGYD----DFNCNVWDSMKTER  304 (340)
Q Consensus       262 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~~----d~~i~iw~~~~~~~  304 (340)
                      ........ ..|..+...+++..+.....    -.++..||..+++.
T Consensus       363 ~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  363 REIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             eeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            33332222 22445554555554433221    24566677666554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4441|consensus

Probab=96.88  E-value=0.26  Score=46.70  Aligned_cols=216  Identities=18%  Similarity=0.213  Sum_probs=105.6

Q ss_pred             CCCEEEEEeCCC------eEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCC------CeEEEEECCCCc
Q psy15421        108 SGSFVACGGLDN------ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGD------MSCALWDIETGQ  175 (340)
Q Consensus       108 ~~~~l~~~~~d~------~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~  175 (340)
                      .+..++.||..+      .+..||..++  .+.....++.... -.++...++..+++|+.|      .++..||..+++
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~--~w~~~a~m~~~r~-~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTN--EWSSLAPMPSPRC-RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcC--cEeecCCCCcccc-cccEEEECCEEEEEccccCCCcccceEEEecCCCCc
Confidence            355566666663      4666776543  2222222222222 223334455567778777      357788887765


Q ss_pred             eEE--EEecCCCCeEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCeeeeEecCCCCCeEEE-EEecCCCEEEEEeCC
Q psy15421        176 QCA--SFIGHTGDVMSLSLAPDMRTFVSGACDAS-----AKLWDIRDGSCKQTFPGHESDINAV-TFFPNGWAFATGSDD  247 (340)
Q Consensus       176 ~~~--~~~~~~~~v~~~~~~~~~~~~~sg~~dg~-----i~~wd~~~~~~~~~~~~h~~~v~~v-~~~~~~~~l~s~s~d  247 (340)
                      =..  .+....... .++ .-++..++.|+.||.     +-.||..+.+- ........+..+. ...-+|..++.||.+
T Consensus       361 W~~~a~M~~~R~~~-~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W-~~va~m~~~r~~~gv~~~~g~iYi~GG~~  437 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDF-GVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKW-TPVAPMLTRRSGHGVAVLGGKLYIIGGGD  437 (571)
T ss_pred             eeccCCccCccccc-eeE-EECCEEEEEeccccccccccEEEecCCCCcc-cccCCCCcceeeeEEEEECCEEEEEcCcC
Confidence            222  111111111 111 225778888999865     55567665431 1111111122222 222368888999866


Q ss_pred             Cc------EEEEeCcCCc--EEEEeecCCcccceEEEEEcCCCcEEEEEeCCCc-----EEEEeCCCc--eeeeeeccCC
Q psy15421        248 AT------CRLFDIRADQ--ELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN-----CNVWDSMKT--ERAGILAGHD  312 (340)
Q Consensus       248 ~~------i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~-----i~iw~~~~~--~~~~~~~~h~  312 (340)
                      +.      +..||..+..  .+..+......  .. ++. -+++++++|+.|+.     |..||..+.  ..+..+....
T Consensus       438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~--~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r  513 (571)
T KOG4441|consen  438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSG--FG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR  513 (571)
T ss_pred             CCccccceEEEEcCCCCceeecCCccccccc--ce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence            54      4566655432  12111111111  11 111 26789999998863     667775433  2232232222


Q ss_pred             cceEEEEECCCCCEEEEeeCCCc
Q psy15421        313 NRVSCLGVTEDGMAVATGSWDSF  335 (340)
Q Consensus       313 ~~i~~~~~s~d~~~l~s~s~D~~  335 (340)
                      ..+-.+  .-++...+.|+.|+.
T Consensus       514 s~~g~~--~~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  514 SAVGVV--VLGGKLYAVGGFDGN  534 (571)
T ss_pred             ccccEE--EECCEEEEEecccCc
Confidence            222222  225567777888865

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.86  E-value=0.24  Score=42.14  Aligned_cols=216  Identities=11%  Similarity=0.130  Sum_probs=112.4

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEE-------
Q psy15421        107 PSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCAS-------  179 (340)
Q Consensus       107 ~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-------  179 (340)
                      ..++.|+.|..+| +.+++...........     +...|..+...++-.++..-.|+.+.++++..-.....       
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-----~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-----KLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-----ecceEEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccc
Confidence            3578888998888 7888883222221111     11225555555553344444569999999865433221       


Q ss_pred             -------EecCCCCeEEEE--EcCCCCEEEEEeCCCcEEEEECCCC-----eeeeEecCCCCCeEEEEEecCCCEEEEEe
Q psy15421        180 -------FIGHTGDVMSLS--LAPDMRTFVSGACDASAKLWDIRDG-----SCKQTFPGHESDINAVTFFPNGWAFATGS  245 (340)
Q Consensus       180 -------~~~~~~~v~~~~--~~~~~~~~~sg~~dg~i~~wd~~~~-----~~~~~~~~h~~~v~~v~~~~~~~~l~s~s  245 (340)
                             .......+...+  -.+.+...+.......|.+|.+...     +..+.+. -...+.+++|.  +..++.|.
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~  155 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGT  155 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEe
Confidence                   111222344444  2234445555666679999887653     2334443 34678899998  44677776


Q ss_pred             CCCcEEEEeCcCCcEEEEeecCC----------cccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeee--eeccCCc
Q psy15421        246 DDATCRLFDIRADQELAMYSHDN----------IICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAG--ILAGHDN  313 (340)
Q Consensus       246 ~d~~i~iwd~~~~~~~~~~~~~~----------~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~--~~~~h~~  313 (340)
                      .+ ...+.|+.+......+....          ...++..+. -+++.+|++- ++  +-+|=...+++..  .+.- ..
T Consensus       156 ~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~-~~--~g~fv~~~G~~~r~~~i~W-~~  229 (275)
T PF00780_consen  156 SK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY-DN--IGVFVNKNGEPSRKSTIQW-SS  229 (275)
T ss_pred             CC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe-cc--eEEEEcCCCCcCcccEEEc-CC
Confidence            44 47788888655433322111          111233333 3445666653 33  2233234454332  2222 22


Q ss_pred             ceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        314 RVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       314 ~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ....+++..  .+|+.-+. +.|.||+
T Consensus       230 ~p~~~~~~~--pyli~~~~-~~iEV~~  253 (275)
T PF00780_consen  230 APQSVAYSS--PYLIAFSS-NSIEVRS  253 (275)
T ss_pred             chhEEEEEC--CEEEEECC-CEEEEEE
Confidence            344555533  36666554 4477764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1897|consensus

Probab=96.82  E-value=0.56  Score=45.82  Aligned_cols=274  Identities=13%  Similarity=0.133  Sum_probs=143.4

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeC--CCCCeeEEe--eCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCC
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDS--YTTNKVHAI--PLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREG  131 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~--~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~  131 (340)
                      ..|.-.++-.|..+|.++..||.+.-+.+  .++..-..-  .....++.--.|+..++..+.+..|....+|..+.   
T Consensus       584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~---  660 (1096)
T KOG1897|consen  584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG---  660 (1096)
T ss_pred             hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC---
Confidence            45777777777889999999999886644  343321111  11122333335665555444455566656665321   


Q ss_pred             ceEEEEeecCCCcceEEEEEcCCC--eEEEEeCCCeEEEEECCCCce--EEEEecCCCCeEEEEEcCCCCEEEEEeC---
Q psy15421        132 NVRVSRELPGHTGYLSCCRFLDDN--QIVTSSGDMSCALWDIETGQQ--CASFIGHTGDVMSLSLAPDMRTFVSGAC---  204 (340)
Q Consensus       132 ~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~sg~~---  204 (340)
                      +.  ..+.-.-+..-..|.|.++.  ..+.....+.+++--+..-+.  +++ ......+..+++.+....+.+.+.   
T Consensus       661 kL--v~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irt-vpl~~~prrI~~q~~sl~~~v~s~r~e  737 (1096)
T KOG1897|consen  661 KL--VYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRT-VPLGESPRRICYQESSLTFGVLSNRIE  737 (1096)
T ss_pred             cE--EEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceee-ecCCCChhheEecccceEEEEEecccc
Confidence            11  11111111111223343322  223333455566655543221  223 223334556666654333333221   


Q ss_pred             --------C---CcEEEEECCCCeeeeEec--CC--CCCeEEEEEecC-CCEEEEEeC----------CCcEEEEeCcCC
Q psy15421        205 --------D---ASAKLWDIRDGSCKQTFP--GH--ESDINAVTFFPN-GWAFATGSD----------DATCRLFDIRAD  258 (340)
Q Consensus       205 --------d---g~i~~wd~~~~~~~~~~~--~h--~~~v~~v~~~~~-~~~l~s~s~----------d~~i~iwd~~~~  258 (340)
                              .   ..++++|-++-+.....+  ..  ...+.+..|..| +.+++.|..          .|.|.+|-+...
T Consensus       738 ~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~  817 (1096)
T KOG1897|consen  738 SSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL  817 (1096)
T ss_pred             cchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC
Confidence                    1   124555544433322211  11  123555567766 677777753          366666666553


Q ss_pred             cEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        259 QELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       259 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      +.+...........+.++.-- +|+++|.  -+..|++|+..+.+.+.....|..++..+...-.|..++.|..-+.+.+
T Consensus       818 ~~L~~v~e~~v~Gav~aL~~f-ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl  894 (1096)
T KOG1897|consen  818 NSLELVAETVVKGAVYALVEF-NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL  894 (1096)
T ss_pred             Cceeeeeeeeeccceeehhhh-CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence            333332222222334443322 4666654  4457999998887777777889999999999888889998877666543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.56  E-value=0.012  Score=34.94  Aligned_cols=31  Identities=13%  Similarity=0.233  Sum_probs=27.8

Q ss_pred             cccceEEEEEcCCCcEEEEEeCCCcEEEEeC
Q psy15421        269 IICGITSVAFSRSGRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       269 ~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~  299 (340)
                      ....|.+++|+|...+||.|+.+|.|.+|-+
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            3345899999999999999999999999986

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.34  E-value=0.32  Score=43.45  Aligned_cols=144  Identities=13%  Similarity=0.088  Sum_probs=78.8

Q ss_pred             CCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCCC--ee--eeEecCCCCCeEEEEEecCCCEEEEEeCCC
Q psy15421        185 GDVMSLSLAPDMRTFVSGA-----------CDA-SAKLWDIRDG--SC--KQTFPGHESDINAVTFFPNGWAFATGSDDA  248 (340)
Q Consensus       185 ~~v~~~~~~~~~~~~~sg~-----------~dg-~i~~wd~~~~--~~--~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~  248 (340)
                      .....|+|.++++++++-.           ..+ .|.+++-.++  ..  ...+.......+.+++.+++ .+++ ....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCe
Confidence            3467888999988777642           223 6777765432  21  23333233346789999988 5554 3343


Q ss_pred             cEEEEeCcCC-----c--EEE-EeecCC--cccceEEEEEcCCCcEEEEEeCC-------------------CcEEEEeC
Q psy15421        249 TCRLFDIRAD-----Q--ELA-MYSHDN--IICGITSVAFSRSGRLLLAGYDD-------------------FNCNVWDS  299 (340)
Q Consensus       249 ~i~iwd~~~~-----~--~~~-~~~~~~--~~~~i~~~~~s~~~~~l~~g~~d-------------------~~i~iw~~  299 (340)
                      ..++.|....     +  .+. .+....  .......++|.|||.+.++-+..                   +.|.-++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3334454321     1  111 121110  12236789999999887754421                   33444443


Q ss_pred             CCceeeeeeccCCcceEEEEECCCCCEEEEee
Q psy15421        300 MKTERAGILAGHDNRVSCLGVTEDGMAVATGS  331 (340)
Q Consensus       300 ~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s  331 (340)
                      ...+.. .+..-....+.++|+|+|.++++-.
T Consensus       172 dg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       172 DGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCeEE-EEecCcCCCccceECCCCCEEEEcc
Confidence            333322 2222234557899999998877643

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA02790 Kelch-like protein; Provisional

Probab=96.29  E-value=0.37  Score=44.75  Aligned_cols=172  Identities=10%  Similarity=-0.004  Sum_probs=77.5

Q ss_pred             CCCeEEEEeCCC-----eEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCC--eEEEEEccCCCCceEEEEe
Q psy15421         66 DSRNLVSASQDG-----KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDN--ICSIYSLKTREGNVRVSRE  138 (340)
Q Consensus        66 ~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~~~~~~~  138 (340)
                      ++..++.||.++     ++..||..+......-+.............++...+.||.++  .+..|+...  ..+.....
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~--n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGD--AAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCC--CeEEECCC
Confidence            455667777643     466677766543322211111111111234677778887643  466676532  22222222


Q ss_pred             ecCCCcceEEEEEcCCCeEEEEeCC---CeEEEEECCCCceEE--EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy15421        139 LPGHTGYLSCCRFLDDNQIVTSSGD---MSCALWDIETGQQCA--SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDI  213 (340)
Q Consensus       139 ~~~~~~~v~~~~~~~~~~l~~~~~d---~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~  213 (340)
                      ++...... +....++..++.|+.+   ..+..||.++++-..  .+....... ++ ..-+++.++.|   |.+..||.
T Consensus       349 l~~~r~~~-~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~G---G~~e~ydp  422 (480)
T PHA02790        349 LLKPRCNP-AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVG---RNAEFYCE  422 (480)
T ss_pred             CCCCCccc-EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEEC---CceEEecC
Confidence            22111111 1122234445555544   347788887654221  111011111 22 22356666666   35778888


Q ss_pred             CCCee--eeEecCCCCCeEEEEEecCCCEEEEEeCC
Q psy15421        214 RDGSC--KQTFPGHESDINAVTFFPNGWAFATGSDD  247 (340)
Q Consensus       214 ~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~s~d  247 (340)
                      ++++=  +..++...... +++ .-+++.++.||.+
T Consensus       423 ~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~  456 (480)
T PHA02790        423 SSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFY  456 (480)
T ss_pred             CCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcC
Confidence            76531  11121111111 222 2357788888865

>PRK13684 Ycf48-like protein; Provisional

Probab=96.26  E-value=0.73  Score=40.54  Aligned_cols=151  Identities=11%  Similarity=0.071  Sum_probs=81.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEE-EEECCCCeeeeEec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEE
Q psy15421        184 TGDVMSLSLAPDMRTFVSGACDASAK-LWDIRDGSCKQTFP-GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL  261 (340)
Q Consensus       184 ~~~v~~~~~~~~~~~~~sg~~dg~i~-~wd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~  261 (340)
                      ...+..+.+.|++.++++| ..|.+. .+|- .++...... +-...++++.+.|+++.++.| ..|.+++=....+..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            3467889999987666554 455543 2222 122222222 233578899999998876665 4677654222322221


Q ss_pred             EEeec--CCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeec---cCCcceEEEEECCCCCEEEEeeCCCcE
Q psy15421        262 AMYSH--DNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA---GHDNRVSCLGVTEDGMAVATGSWDSFL  336 (340)
Q Consensus       262 ~~~~~--~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~---~h~~~i~~~~~s~d~~~l~s~s~D~~i  336 (340)
                      .....  ......+..+.+.|++..+++| .+|.+.. ....++.-....   +-....+.+.|-.++..++ .+..|.|
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i  325 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL  325 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence            11111  1111347788999988876665 4565543 333333322222   1224577788877776666 4557777


Q ss_pred             EecC
Q psy15421        337 RIWN  340 (340)
Q Consensus       337 ~iW~  340 (340)
                      .-|+
T Consensus       326 l~~~  329 (334)
T PRK13684        326 LRYV  329 (334)
T ss_pred             EEec
Confidence            6553

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.26  E-value=0.02  Score=33.94  Aligned_cols=33  Identities=15%  Similarity=0.401  Sum_probs=29.2

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN   88 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~   88 (340)
                      ..+|..++|+|...+||.+..||.|.++.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            357999999999999999999999999987 444

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.25  E-value=0.29  Score=44.50  Aligned_cols=111  Identities=15%  Similarity=0.213  Sum_probs=66.7

Q ss_pred             EEEEcCCCCEEEEE-eCC----CcEEEEECCCCeeeeE-ecCCCCCeEEEEEecCCCEEEEEeCCC-----------cEE
Q psy15421        189 SLSLAPDMRTFVSG-ACD----ASAKLWDIRDGSCKQT-FPGHESDINAVTFFPNGWAFATGSDDA-----------TCR  251 (340)
Q Consensus       189 ~~~~~~~~~~~~sg-~~d----g~i~~wd~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~s~d~-----------~i~  251 (340)
                      ...++|++++++-+ +..    .+++++|+++++.+.. +...  ....+.|.++++.|+-...+.           .|+
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            56789999987632 333    4599999999976543 2221  123499999988776554433           277


Q ss_pred             EEeCcCCcE--EEEeecCCcccceEEEEEcCCCcEEEEEeCC----CcEEEEeCCC
Q psy15421        252 LFDIRADQE--LAMYSHDNIICGITSVAFSRSGRLLLAGYDD----FNCNVWDSMK  301 (340)
Q Consensus       252 iwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d----~~i~iw~~~~  301 (340)
                      .|.+.+...  ...+...........+..++|+++|+.....    ..+.+.+...
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence            888776532  2333322222124578889999998864332    3466777655

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PHA03098 kelch-like protein; Provisional

Probab=96.20  E-value=0.75  Score=43.41  Aligned_cols=185  Identities=10%  Similarity=0.052  Sum_probs=82.4

Q ss_pred             CCCeEEEEeCCC------eEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC-----CeEEEEEccCCCCceE
Q psy15421         66 DSRNLVSASQDG------KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD-----NICSIYSLKTREGNVR  134 (340)
Q Consensus        66 ~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d-----~~v~i~~~~~~~~~~~  134 (340)
                      ++..++.||.++      .+..||..+.+....-..............+++.++.||.+     +.+..||..+.  .+.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGES--KWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCC--cee
Confidence            455666776543      46677776655422111111111111122367777778765     24566665432  222


Q ss_pred             EEEeecCCCcceEEEEEcCCCeEEEEeCC------CeEEEEECCCCceEE--EEecCCCCeEEEEEcCCCCEEEEEeCCC
Q psy15421        135 VSRELPGHTGYLSCCRFLDDNQIVTSSGD------MSCALWDIETGQQCA--SFIGHTGDVMSLSLAPDMRTFVSGACDA  206 (340)
Q Consensus       135 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~sg~~dg  206 (340)
                      ....++...... +....++..++.|+.+      ..+..||+.+++-..  .+....... +++ ..++..++.|+.++
T Consensus       372 ~~~~lp~~r~~~-~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~  448 (534)
T PHA03098        372 EEPPLIFPRYNP-CVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHDGKIYVIGGISY  448 (534)
T ss_pred             eCCCcCcCCccc-eEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EECCEEEEECCccC
Confidence            211121111111 1122234445555421      457888987654211  111111111 222 23456667776432


Q ss_pred             --------cEEEEECCCCeee--eEecCCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCcC
Q psy15421        207 --------SAKLWDIRDGSCK--QTFPGHESDINAVTFFPNGWAFATGSDD-----ATCRLFDIRA  257 (340)
Q Consensus       207 --------~i~~wd~~~~~~~--~~~~~h~~~v~~v~~~~~~~~l~s~s~d-----~~i~iwd~~~  257 (340)
                              .+..||..+++=.  ..++..... .+++. .++..++.|+.+     ..+..||..+
T Consensus       449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRIN-ASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             CCCCcccceEEEecCCCCceeeCCCCCccccc-ceEEE-ECCEEEEEcCCcCCcccceeEEEeCCC
Confidence                    3788888765421  111111111 11222 256777777754     3566776654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.17  E-value=0.34  Score=40.71  Aligned_cols=99  Identities=17%  Similarity=0.166  Sum_probs=62.0

Q ss_pred             CeEEEEEecCCCEEEEEe---CCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEe-CCCce
Q psy15421        228 DINAVTFFPNGWAFATGS---DDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD-SMKTE  303 (340)
Q Consensus       228 ~v~~v~~~~~~~~l~s~s---~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~-~~~~~  303 (340)
                      .+.+.++++++..+|...   ....++++.......... .    ...+..-.|++++...+....+...+++. ...+.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~----g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-T----GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-c----CCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence            678899999998776655   334455554433222211 1    11467789999998888877777777774 22222


Q ss_pred             --eeee-eccCCcceEEEEECCCCCEEEEee
Q psy15421        304 --RAGI-LAGHDNRVSCLGVTEDGMAVATGS  331 (340)
Q Consensus       304 --~~~~-~~~h~~~i~~~~~s~d~~~l~s~s  331 (340)
                        .... ...-.+.|..+.+||||..++--.
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEE
Confidence              2111 111112899999999999877555

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.12  E-value=1.2  Score=41.78  Aligned_cols=151  Identities=13%  Similarity=0.092  Sum_probs=86.6

Q ss_pred             CCeEEEEeCCCeEEEEECCCCceEEEEecCCCC-eEEEEEcC---CCCEEEEEe------CCCcEEEEECCCCeeeeEec
Q psy15421        154 DNQIVTSSGDMSCALWDIETGQQCASFIGHTGD-VMSLSLAP---DMRTFVSGA------CDASAKLWDIRDGSCKQTFP  223 (340)
Q Consensus       154 ~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~---~~~~~~sg~------~dg~i~~wd~~~~~~~~~~~  223 (340)
                      +++++.++.|+.+.-.|.++|+.+-........ -..+.-+|   ++ .++.+.      .+|.|.-+|.++|+.+-.+.
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            456777888999999999999987654321100 00111112   33 444443      26899999999987654332


Q ss_pred             C---C----------------------------CCCeE-EEEEecCCCEEEEEeCC-----C-----------cEEEEeC
Q psy15421        224 G---H----------------------------ESDIN-AVTFFPNGWAFATGSDD-----A-----------TCRLFDI  255 (340)
Q Consensus       224 ~---h----------------------------~~~v~-~v~~~~~~~~l~s~s~d-----~-----------~i~iwd~  255 (340)
                      .   .                            ...+. .++++|....+..+..+     +           +|.--|.
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~  278 (527)
T TIGR03075       199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP  278 (527)
T ss_pred             CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence            1   1                            01111 23566654444433321     2           4455566


Q ss_pred             cCCcEEEEeecCCc-------ccceEEEEEcCCCc---EEEEEeCCCcEEEEeCCCceee
Q psy15421        256 RADQELAMYSHDNI-------ICGITSVAFSRSGR---LLLAGYDDFNCNVWDSMKTERA  305 (340)
Q Consensus       256 ~~~~~~~~~~~~~~-------~~~i~~~~~s~~~~---~l~~g~~d~~i~iw~~~~~~~~  305 (340)
                      ++++...-+....+       .....-+....+|+   .++.+..+|.+.+.|..+++.+
T Consensus       279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            77776654432111       11222333335666   7889999999999999998875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1916|consensus

Probab=96.06  E-value=0.003  Score=60.01  Aligned_cols=170  Identities=17%  Similarity=0.259  Sum_probs=93.8

Q ss_pred             CeEEEEECC--CCceEEEEe-----cCCCCeEEEEEc---CCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEE
Q psy15421        164 MSCALWDIE--TGQQCASFI-----GHTGDVMSLSLA---PDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVT  233 (340)
Q Consensus       164 ~~v~iwd~~--~~~~~~~~~-----~~~~~v~~~~~~---~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~  233 (340)
                      |...+|++.  .|+....+.     ....++.-+.|+   ++.-++..+-.+++|++..+.... ...+.+|...+..++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH-HHHHHhcCCCcccHH
Confidence            567788764  343322221     222333344444   456566677788999987664322 233445665544332


Q ss_pred             -----------EecCCCEEEEEeCCCcEEEEeCc-CCc----EEEEee-cCCcccceEEEEEcCC---------CcEEEE
Q psy15421        234 -----------FFPNGWAFATGSDDATCRLFDIR-ADQ----ELAMYS-HDNIICGITSVAFSRS---------GRLLLA  287 (340)
Q Consensus       234 -----------~~~~~~~l~s~s~d~~i~iwd~~-~~~----~~~~~~-~~~~~~~i~~~~~s~~---------~~~l~~  287 (340)
                                 .+|||+.||..+.||.+++|.+- .++    ++.... |.+.. .+..+ ++..         -.++++
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p-~vC~l-c~~~~~~~v~i~~w~~~It  309 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHP-RVCWL-CHKQEILVVSIGKWVLRIT  309 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCC-ceeee-eccccccCCccceeEEEEe
Confidence                       58999999999999999999753 222    222222 22111 12222 3321         123444


Q ss_pred             E-eCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCE------------EEEeeCCCcEEec
Q psy15421        288 G-YDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMA------------VATGSWDSFLRIW  339 (340)
Q Consensus       288 g-~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~------------l~s~s~D~~i~iW  339 (340)
                      + ..+..+++|....+.|.  ++.-.+.|..|+ -+||..            +++-+.|+.|.+|
T Consensus       310 ttd~nre~k~w~~a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~  371 (1283)
T KOG1916|consen  310 TTDVNREEKFWAEAPWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIW  371 (1283)
T ss_pred             cccCCcceeEeeccchhhh--hhhcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHh
Confidence            4 45678999987666665  333345555555 444432            4556677777777

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.06  E-value=0.98  Score=40.10  Aligned_cols=218  Identities=17%  Similarity=0.222  Sum_probs=104.8

Q ss_pred             CCCCCEEEEEe---------CCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCce
Q psy15421        106 APSGSFVACGG---------LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQ  176 (340)
Q Consensus       106 ~~~~~~l~~~~---------~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~  176 (340)
                      |||+++++...         ..+...+||+.++.  .   ..+......+....|++++..++-..++.|.++++.+++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~--~---~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE--I---TPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE--E---EESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc--e---EECcCCccccccceeecCCCeeEEEecCceEEEECCCCCe
Confidence            46666665532         23456788887642  1   1122224556677888887766666788999999877643


Q ss_pred             EEEE-ec-------C---------CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeeeEecCCCC---CeEEEEEe
Q psy15421        177 CASF-IG-------H---------TGDVMSLSLAPDMRTFVSGAC-DASAKLWDIRDGSCKQTFPGHES---DINAVTFF  235 (340)
Q Consensus       177 ~~~~-~~-------~---------~~~v~~~~~~~~~~~~~sg~~-dg~i~~wd~~~~~~~~~~~~h~~---~v~~v~~~  235 (340)
                      .+-. .+       -         -+.-..+-|+||++.|+.... +..|+.+.+-      .+.....   .+..+.+-
T Consensus        76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~------~~~~~~~~yp~~~~~~YP  149 (353)
T PF00930_consen   76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP------DYSPPDSQYPEVESIRYP  149 (353)
T ss_dssp             EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE------EESSSTESS-EEEEEE--
T ss_pred             EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee------ccCCccccCCcccccccC
Confidence            3211 11       0         112357889999998886443 4444444321      1111111   23344432


Q ss_pred             cCCCEEEEEeCCCcEEEEeCcCCcEEEE-ee--cCCcccceEEEEEcCCCcEEEEEe--CC---CcEEEEeCCCceeeee
Q psy15421        236 PNGWAFATGSDDATCRLFDIRADQELAM-YS--HDNIICGITSVAFSRSGRLLLAGY--DD---FNCNVWDSMKTERAGI  307 (340)
Q Consensus       236 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~--~~~~~~~i~~~~~s~~~~~l~~g~--~d---~~i~iw~~~~~~~~~~  307 (340)
                      .-|..-.    .-.+.++|+.+++.... ..  ......-+..+.|.++++.|+.--  .+   ..+.++|..+++....
T Consensus       150 k~G~~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~  225 (353)
T PF00930_consen  150 KAGDPNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVV  225 (353)
T ss_dssp             BTTS-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEE
T ss_pred             CCCCcCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEE
Confidence            2232211    11355677776654221 11  011123378999999999444322  22   2345566655544322


Q ss_pred             ec-cCCcce---EEEEEC-CCCC-EEEEeeCCCcEEe
Q psy15421        308 LA-GHDNRV---SCLGVT-EDGM-AVATGSWDSFLRI  338 (340)
Q Consensus       308 ~~-~h~~~i---~~~~~s-~d~~-~l~s~s~D~~i~i  338 (340)
                      +. ....+|   ....|. +++. +|.....||--.|
T Consensus       226 ~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl  262 (353)
T PF00930_consen  226 LEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL  262 (353)
T ss_dssp             EEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred             EEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence            22 122333   244554 5554 4445556665444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PHA03098 kelch-like protein; Provisional

Probab=95.90  E-value=1.4  Score=41.69  Aligned_cols=141  Identities=11%  Similarity=0.179  Sum_probs=66.8

Q ss_pred             CCCeEEEEeCC-----CeEEEEECCCCceEE--EEecCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeee
Q psy15421        153 DDNQIVTSSGD-----MSCALWDIETGQQCA--SFIGHTGDVMSLSLAPDMRTFVSGACD------ASAKLWDIRDGSCK  219 (340)
Q Consensus       153 ~~~~l~~~~~d-----~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~sg~~d------g~i~~wd~~~~~~~  219 (340)
                      ++..++.|+.+     ..+..||..+++-..  .+. +...-.+++. -+++.++.|+.+      ..+..||..+++=.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp-~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLI-FPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcC-cCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            34445556544     346778877654211  111 1111112222 356667777732      45778888765421


Q ss_pred             e--EecCCCCCeEEEEEecCCCEEEEEeCCC--------cEEEEeCcCCc--EEEEeecCCcccceEEEEEcCCCcEEEE
Q psy15421        220 Q--TFPGHESDINAVTFFPNGWAFATGSDDA--------TCRLFDIRADQ--ELAMYSHDNIICGITSVAFSRSGRLLLA  287 (340)
Q Consensus       220 ~--~~~~h~~~v~~v~~~~~~~~l~s~s~d~--------~i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
                      .  .++.... -.++ ...++..++.||.+.        .+..||..+.+  .+.......  .....+.+  ++++++.
T Consensus       420 ~~~~~p~~r~-~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r--~~~~~~~~--~~~iyv~  493 (534)
T PHA03098        420 KGSPLPISHY-GGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR--INASLCIF--NNKIYVV  493 (534)
T ss_pred             ecCCCCcccc-CceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc--ccceEEEE--CCEEEEE
Confidence            1  1111101 1122 223566777776532        37788876532  221111111  11122222  6788888


Q ss_pred             EeCC-----CcEEEEeCCC
Q psy15421        288 GYDD-----FNCNVWDSMK  301 (340)
Q Consensus       288 g~~d-----~~i~iw~~~~  301 (340)
                      |+.+     ..+.+||..+
T Consensus       494 GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        494 GGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             cCCcCCcccceeEEEeCCC
Confidence            8764     4677787554

>KOG2247|consensus

Probab=95.87  E-value=0.0011  Score=58.75  Aligned_cols=144  Identities=13%  Similarity=0.160  Sum_probs=99.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEeCcCCcEEE-E
Q psy15421        186 DVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA-TGSDDATCRLFDIRADQELA-M  263 (340)
Q Consensus       186 ~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~-~  263 (340)
                      ......|.|.+..++.++.+-.+..||-. ++..-... ..+....++|+.++..++ .+-..+.+.+||+.+..... .
T Consensus        36 ~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE  113 (615)
T KOG2247|consen   36 GPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE  113 (615)
T ss_pred             ccceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence            34566778888778888999999999944 33222222 233445677887766544 45667899999987532211 1


Q ss_pred             eecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCc
Q psy15421        264 YSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF  335 (340)
Q Consensus       264 ~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~  335 (340)
                      +.. ...  -.-..|++..+.++.|-..+.+.|++..+.+....+..|...++++++.+.+. .+.++.|..
T Consensus       114 ~gg-~~s--~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~  181 (615)
T KOG2247|consen  114 SGG-TSS--KSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT  181 (615)
T ss_pred             ccC-cch--HHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHH
Confidence            111 111  12268999999999999999999999888777777766999999999999874 555665543

>KOG3630|consensus

Probab=95.86  E-value=0.23  Score=49.14  Aligned_cols=185  Identities=9%  Similarity=0.033  Sum_probs=106.2

Q ss_pred             EEEEEcCCCCeEEEEeCCCeEEEEeCCC-------CC---------eeEEeeCCC-CcEEEEEECCCCCEEEEEeCCC--
Q psy15421         59 YAMHWGSDSRNLVSASQDGKLIVWDSYT-------TN---------KVHAIPLRS-SWVMTCAYAPSGSFVACGGLDN--  119 (340)
Q Consensus        59 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~-------~~---------~~~~~~~~~-~~i~~v~~~~~~~~l~~~~~d~--  119 (340)
                      ..++.++.-..+++++..+.+.++-..+       ..         ...+++.|. .++......+|++..++....+  
T Consensus        45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~  124 (1405)
T KOG3630|consen   45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE  124 (1405)
T ss_pred             hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence            3445556556677777777676663211       10         112333332 3455566677877766654444  


Q ss_pred             eEEEEEccCCCCceEEE-Eeec------CCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEE
Q psy15421        120 ICSIYSLKTREGNVRVS-RELP------GHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSL  190 (340)
Q Consensus       120 ~v~i~~~~~~~~~~~~~-~~~~------~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~  190 (340)
                      .|..||+..-....... +.+.      .......++.|.+.  ...+.+..|+.|++..+..-.....-.......+++
T Consensus       125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav  204 (1405)
T KOG3630|consen  125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAV  204 (1405)
T ss_pred             eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeE
Confidence            78888887532221111 1111      12234445556543  235566778888887764322222222344568899


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecC---C-CCCeEEEEEecCCCEEEEE
Q psy15421        191 SLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG---H-ESDINAVTFFPNGWAFATG  244 (340)
Q Consensus       191 ~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~---h-~~~v~~v~~~~~~~~l~s~  244 (340)
                      +|+|.|+.++.|-..|++.-|...- +....+++   . ...|.+|.|-.....++..
T Consensus       205 ~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  205 LWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             EeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence            9999999999999999999997542 22223321   1 3678999998765555543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.69  E-value=1.1  Score=37.60  Aligned_cols=183  Identities=14%  Similarity=0.143  Sum_probs=105.4

Q ss_pred             CcceEEEEEcCCCeEE-EEeCC--CeEEEEECCCCceEEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q psy15421        143 TGYLSCCRFLDDNQIV-TSSGD--MSCALWDIETGQQCASFIGHT-GDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC  218 (340)
Q Consensus       143 ~~~v~~~~~~~~~~l~-~~~~d--~~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~  218 (340)
                      ..+...+.|.+++.|. +.+.-  ..|+.+|+.+++......-.. -.--.++...+ +.+.-.-.++...+||..+-+.
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEE
T ss_pred             cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceE
Confidence            3456667775555544 44433  469999999998765433211 11223444433 3444456789999999998888


Q ss_pred             eeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeec---CCcccceEEEEEcCCCcEEEEEeCCCcEE
Q psy15421        219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSH---DNIICGITSVAFSRSGRLLLAGYDDFNCN  295 (340)
Q Consensus       219 ~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~g~~d~~i~  295 (340)
                      +..++- .+.-+.++  .++..|+.......++++|..+.+.......   ......++-+.|- +|.+.|---....|-
T Consensus       123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~  198 (264)
T PF05096_consen  123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV  198 (264)
T ss_dssp             EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred             EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence            877753 35667777  4566777776678899999876555443321   1222346667765 566666555555666


Q ss_pred             EEeCCCceeeeeec-----c-------C---CcceEEEEECCCCCE-EEEe
Q psy15421        296 VWDSMKTERAGILA-----G-------H---DNRVSCLGVTEDGMA-VATG  330 (340)
Q Consensus       296 iw~~~~~~~~~~~~-----~-------h---~~~i~~~~~s~d~~~-l~s~  330 (340)
                      ..|-.+++....+.     .       +   .+-.+.+|+.|++.. +++|
T Consensus       199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            67777777665431     0       1   244789999887654 4454

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.39  E-value=1.9  Score=38.53  Aligned_cols=146  Identities=14%  Similarity=0.120  Sum_probs=73.5

Q ss_pred             EEEEEECCCCCEEEEEe-----------CCC-eEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEE
Q psy15421        100 VMTCAYAPSGSFVACGG-----------LDN-ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCA  167 (340)
Q Consensus       100 i~~v~~~~~~~~l~~~~-----------~d~-~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~  167 (340)
                      ...++|.++|+++++-.           ..+ .|.+++-..+++.......+.........+.+.+++ ++.+..+...+
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i~~   94 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDILF   94 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeEEE
Confidence            34677888888776642           112 455554433334322222222112233445555666 44444444334


Q ss_pred             EEECCCC-----c--eEE-EEec----CCCCeEEEEEcCCCCEEEEEeCC-------------------CcEEEEECCCC
Q psy15421        168 LWDIETG-----Q--QCA-SFIG----HTGDVMSLSLAPDMRTFVSGACD-------------------ASAKLWDIRDG  216 (340)
Q Consensus       168 iwd~~~~-----~--~~~-~~~~----~~~~v~~~~~~~~~~~~~sg~~d-------------------g~i~~wd~~~~  216 (340)
                      +.|....     +  .+. .+..    +......+++.||+.++++-+..                   |.|.-++...+
T Consensus        95 ~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~  174 (367)
T TIGR02604        95 LRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG  174 (367)
T ss_pred             EeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCC
Confidence            4454321     1  111 1211    12347789999999877754421                   34555555544


Q ss_pred             eeeeEecCCCCCeEEEEEecCCCEEEEEeCC
Q psy15421        217 SCKQTFPGHESDINAVTFFPNGWAFATGSDD  247 (340)
Q Consensus       217 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d  247 (340)
                      +....-.++ .....++|+|+|..+++-..+
T Consensus       175 ~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       175 KLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             eEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence            432222232 335689999999888765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.36  E-value=0.73  Score=42.58  Aligned_cols=147  Identities=10%  Similarity=0.113  Sum_probs=81.3

Q ss_pred             CeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeeeEecCCCCCeEEEEEecC----CCEEEEEeCCCcEEEEeCcC--
Q psy15421        186 DVMSLSLAPDMRTFVSGA--CDASAKLWDIRDGSCKQTFPGHESDINAVTFFPN----GWAFATGSDDATCRLFDIRA--  257 (340)
Q Consensus       186 ~v~~~~~~~~~~~~~sg~--~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~----~~~l~s~s~d~~i~iwd~~~--  257 (340)
                      ++..++|....+.++|.-  ..|.+++=|.   ..+..|    +-|..+.|.|-    ...+.....-+.|.+|.+-.  
T Consensus        21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~   93 (671)
T PF15390_consen   21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST   93 (671)
T ss_pred             cccceEecCCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence            466788876555555532  2444443221   122333    34889999984    33455556678999998641  


Q ss_pred             ---CcEEE-Eeec--CCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCC--CceeeeeeccCCcceEEEEECCCCCEEEE
Q psy15421        258 ---DQELA-MYSH--DNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM--KTERAGILAGHDNRVSCLGVTEDGMAVAT  329 (340)
Q Consensus       258 ---~~~~~-~~~~--~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~--~~~~~~~~~~h~~~i~~~~~s~d~~~l~s  329 (340)
                         .+.+. +.-.  +...--...+.|||...+|++=.....--+++..  +......+ .-.+.|.|.+|.+||+.|+.
T Consensus        94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVV  172 (671)
T PF15390_consen   94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVV  172 (671)
T ss_pred             cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEE
Confidence               12211 1101  1111113567999998888764443322233332  22222333 45689999999999998775


Q ss_pred             eeCC-CcEEecC
Q psy15421        330 GSWD-SFLRIWN  340 (340)
Q Consensus       330 ~s~D-~~i~iW~  340 (340)
                      +-.. ---+|||
T Consensus       173 AvGSsLHSyiWd  184 (671)
T PF15390_consen  173 AVGSSLHSYIWD  184 (671)
T ss_pred             EeCCeEEEEEec
Confidence            4322 2345776

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.11  E-value=1.8  Score=36.80  Aligned_cols=231  Identities=15%  Similarity=0.182  Sum_probs=122.7

Q ss_pred             EEEEEEcCCCCeEEEEeCCCeEEEEeCCCC-------CeeEEeeCCC-----CcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         58 IYAMHWGSDSRNLVSASQDGKLIVWDSYTT-------NKVHAIPLRS-----SWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        58 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~-----~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      -+.++++|.+.+-++...-+...+||....       ..+.+++...     ...+.+.|.....+.+++.         
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~---------   95 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGE---------   95 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCC---------
Confidence            378999999998888888899999997611       1223333211     1223333332222211100         


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCce-----EEEEe-cCCCCe-EEEEEcC--CC
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQ-----CASFI-GHTGDV-MSLSLAP--DM  196 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-----~~~~~-~~~~~v-~~~~~~~--~~  196 (340)
                                     +    +     .....++.++.||+|.-|...-+..     ...+. ...+.| ..+++..  .+
T Consensus        96 ---------------g----~-----~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~  151 (336)
T TIGR03118        96 ---------------G----I-----TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGG  151 (336)
T ss_pred             ---------------C----c-----ccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCC
Confidence                           0    0     0112356677888888887533222     11111 111222 3344443  34


Q ss_pred             CEEEEE-eCCCcEEEEECCCCeee--eEec-----CCCCC-----------eEEEEEecCCCEEEEEeCCCcEEEEeCcC
Q psy15421        197 RTFVSG-ACDASAKLWDIRDGSCK--QTFP-----GHESD-----------INAVTFFPNGWAFATGSDDATCRLFDIRA  257 (340)
Q Consensus       197 ~~~~sg-~~dg~i~~wd~~~~~~~--~~~~-----~h~~~-----------v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  257 (340)
                      .+|+.. -..++|.++|-.=....  ..+.     .--.+           |+-..-.+++..=+.|..-|.|-+||...
T Consensus       152 ~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G  231 (336)
T TIGR03118       152 DYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG  231 (336)
T ss_pred             ceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC
Confidence            455443 35788988874322111  0111     00011           11111122232334445567899999863


Q ss_pred             CcEEEEeecCCcccceEEEEEcC------CCcEEEEEeCCCcEEEEeCCCceeeeeeccCC------cceEEEEECC
Q psy15421        258 DQELAMYSHDNIICGITSVAFSR------SGRLLLAGYDDFNCNVWDSMKTERAGILAGHD------NRVSCLGVTE  322 (340)
Q Consensus       258 ~~~~~~~~~~~~~~~i~~~~~s~------~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~------~~i~~~~~s~  322 (340)
                       +.+..+...........++..|      .+.+|+--..||+|..||..+++.+..+..-.      .-++.+.|..
T Consensus       232 -~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       232 -QLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             -cEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence             4444454444444566677655      56778877789999999988888877776543      3457888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.01  E-value=1.5  Score=38.48  Aligned_cols=105  Identities=19%  Similarity=0.276  Sum_probs=57.3

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee---eeEe----cCCCCCeEEEEEecC----CCEEEEEeCC-------
Q psy15421        186 DVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC---KQTF----PGHESDINAVTFFPN----GWAFATGSDD-------  247 (340)
Q Consensus       186 ~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~---~~~~----~~h~~~v~~v~~~~~----~~~l~s~s~d-------  247 (340)
                      ...+|+|.|+++++++ ...|.|++++ ..+..   +..+    .........++++|+    +..+++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            4678999999877765 5699999999 44443   2222    123346789999994    5555555422       


Q ss_pred             -CcEEEEeCcCC-------cEEE-Eeec-CCcccceEEEEEcCCCcEEEEEeCCC
Q psy15421        248 -ATCRLFDIRAD-------QELA-MYSH-DNIICGITSVAFSRSGRLLLAGYDDF  292 (340)
Q Consensus       248 -~~i~iwd~~~~-------~~~~-~~~~-~~~~~~i~~~~~s~~~~~l~~g~~d~  292 (340)
                       ..|.-|.....       +.+. .... .........++|.|||.++++-++.+
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence             23333433322       1111 1111 11122356799999998777655443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.91  E-value=1.8  Score=41.14  Aligned_cols=102  Identities=14%  Similarity=0.206  Sum_probs=65.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeeeeEec-CCCCCeEEEEEe--cCCCEEEEEeCCCcEEEEeCc-----C----CcEEEE
Q psy15421        196 MRTFVSGACDASAKLWDIRDGSCKQTFP-GHESDINAVTFF--PNGWAFATGSDDATCRLFDIR-----A----DQELAM  263 (340)
Q Consensus       196 ~~~~~sg~~dg~i~~wd~~~~~~~~~~~-~h~~~v~~v~~~--~~~~~l~s~s~d~~i~iwd~~-----~----~~~~~~  263 (340)
                      ++..++-+...++.|||.+.+.....-. ...++|.+++|.  |++..+++.|....|.++.-.     .    ..++..
T Consensus        41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~  120 (631)
T PF12234_consen   41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRK  120 (631)
T ss_pred             CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEE
Confidence            4444444556678999999887543221 346789999986  688899999999999988531     1    112222


Q ss_pred             eecCC-cccceEEEEEcCCCcEEEEEeCCCcEEEEeC
Q psy15421        264 YSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       264 ~~~~~-~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~  299 (340)
                      +.... ...+|....|.++|.+++..+.  .+.|++.
T Consensus       121 i~i~~~T~h~Igds~Wl~~G~LvV~sGN--qlfv~dk  155 (631)
T PF12234_consen  121 IDISSHTPHPIGDSIWLKDGTLVVGSGN--QLFVFDK  155 (631)
T ss_pred             EEeecCCCCCccceeEecCCeEEEEeCC--EEEEECC
Confidence            22111 1235788899999877654433  5888873

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1916|consensus

Probab=94.81  E-value=0.023  Score=54.38  Aligned_cols=209  Identities=15%  Similarity=0.208  Sum_probs=106.7

Q ss_pred             ecCccCcEEEEEEcC-CCCeEEEEeCCCeEEEEeCC--CCCeeEEeeCC-----C---CcEEEEEECCCCCEEEEEeCCC
Q psy15421         51 LRGHLAKIYAMHWGS-DSRNLVSASQDGKLIVWDSY--TTNKVHAIPLR-----S---SWVMTCAYAPSGSFVACGGLDN  119 (340)
Q Consensus        51 ~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~-----~---~~i~~v~~~~~~~~l~~~~~d~  119 (340)
                      ++|-.+.|..++|.. +.+.+.  -.-|.+.+|++.  .|+....+-.|     .   ..|.-+-|-++..++-.+-.++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            567778888888854 333433  334678889764  33322111111     1   1122233334455555555555


Q ss_pred             eEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEE
Q psy15421        120 ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTF  199 (340)
Q Consensus       120 ~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  199 (340)
                      .+++..+.....     .-+.+|...+....|...+.+...                              .++|||+.+
T Consensus       206 ~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~------------------------------~lSpDGtv~  250 (1283)
T KOG1916|consen  206 EIRLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLA------------------------------SLSPDGTVF  250 (1283)
T ss_pred             ceeEeeechHHH-----HHHHhcCCCcccHHHHhhchhhhe------------------------------eeCCCCcEE
Confidence            555544433211     112234444433333322222111                              168999999


Q ss_pred             EEEeCCCcEEEEECC-----CCeeeeEecCCCC-CeEEEEEecCC---------CEEEEEe-CCCcEEEEeCcCCcEEEE
Q psy15421        200 VSGACDASAKLWDIR-----DGSCKQTFPGHES-DINAVTFFPNG---------WAFATGS-DDATCRLFDIRADQELAM  263 (340)
Q Consensus       200 ~sg~~dg~i~~wd~~-----~~~~~~~~~~h~~-~v~~v~~~~~~---------~~l~s~s-~d~~i~iwd~~~~~~~~~  263 (340)
                      +..+.||.+++|.+.     ..+|...++.|.+ +--|.-|+.+.         .+.++++ ....+++|.....+++..
T Consensus       251 a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~  330 (1283)
T KOG1916|consen  251 AWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLD  330 (1283)
T ss_pred             EEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhh
Confidence            999999999999763     3345666777763 32232243221         1234443 345688998766665521


Q ss_pred             eecCCcccceEEEEEcCCCcE------------EEEEeCCCcEEEEeCCC
Q psy15421        264 YSHDNIICGITSVAFSRSGRL------------LLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       264 ~~~~~~~~~i~~~~~s~~~~~------------l~~g~~d~~i~iw~~~~  301 (340)
                          .....|..|. =++++.            ++.-.-+++|++|....
T Consensus       331 ----~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  331 ----KLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             ----hcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence                1222344444 223321            23355677888886443

>KOG3630|consensus

Probab=94.71  E-value=0.54  Score=46.67  Aligned_cols=130  Identities=14%  Similarity=0.153  Sum_probs=79.7

Q ss_pred             EEEEeCCCeEEEEECCCCceE-----EEE------ecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCee-eeEec
Q psy15421        157 IVTSSGDMSCALWDIETGQQC-----ASF------IGHTGDVMSLSLAPDMR-TFVSGACDASAKLWDIRDGSC-KQTFP  223 (340)
Q Consensus       157 l~~~~~d~~v~iwd~~~~~~~-----~~~------~~~~~~v~~~~~~~~~~-~~~sg~~dg~i~~wd~~~~~~-~~~~~  223 (340)
                      ++..+.+..|..||++.-...     ..+      ........++.|.|.-. ..+....|+.|++..+..... +..++
T Consensus       117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p  196 (1405)
T KOG3630|consen  117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP  196 (1405)
T ss_pred             EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC
Confidence            334455667899998653211     111      11223456788888643 355677899999887654322 22332


Q ss_pred             CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCc-ccceEEEEEcCCCcEEEE
Q psy15421        224 GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNI-ICGITSVAFSRSGRLLLA  287 (340)
Q Consensus       224 ~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~  287 (340)
                       -....++++|+|.|+.++.|-..|++.-|-..-......-..+.. ...|.++.|-..-.++++
T Consensus       197 -~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  197 -VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             -cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence             345689999999999999999999998876432211111111111 256899999777666664

>KOG1897|consensus

Probab=94.12  E-value=6.6  Score=38.86  Aligned_cols=277  Identities=12%  Similarity=0.122  Sum_probs=134.1

Q ss_pred             CcEEEEEEcCC--CC----eEEEEeCCCeEEEEeC-CCCCeeEEe--e--CCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q psy15421         56 AKIYAMHWGSD--SR----NLVSASQDGKLIVWDS-YTTNKVHAI--P--LRSSWVMTCAYAPSGSFVACGGLDNICSIY  124 (340)
Q Consensus        56 ~~v~~~~~s~~--~~----~l~s~~~d~~i~iwd~-~~~~~~~~~--~--~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~  124 (340)
                      .+|.|+.++|-  ++    .++.|..+..+.+--. .+...+...  +  .-+..|.-..+-.|..||.++..||.+.-|
T Consensus       531 ~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~f  610 (1096)
T KOG1897|consen  531 YEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYF  610 (1096)
T ss_pred             ceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEE
Confidence            57899999874  32    5666766655554422 222222111  1  112345555666778999999999998877


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcC-CCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEE-EEcCC--CCEEE
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLD-DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSL-SLAPD--MRTFV  200 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~-~~~~~--~~~~~  200 (340)
                      -+....+...-.+...--+.++..-.|.. ...-+.+.+|.=..+|.-+ ++.+..-...+ .+..+ .|+.+  ...++
T Consensus       611 v~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~k-ev~~~c~f~s~a~~d~l~  688 (1096)
T KOG1897|consen  611 VLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLK-EVNHMCPFNSDAYPDSLA  688 (1096)
T ss_pred             EEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchH-HhhhhcccccccCCceEE
Confidence            76654443322221111222333334432 3344445566655566543 23222111100 11111 12211  12333


Q ss_pred             EEeCCCcEEEEECCCCe--eeeEecCCCCCeEEEEEecCCCEEEEEeC-----------CC---cEEEEeCcCCcEEEEe
Q psy15421        201 SGACDASAKLWDIRDGS--CKQTFPGHESDINAVTFFPNGWAFATGSD-----------DA---TCRLFDIRADQELAMY  264 (340)
Q Consensus       201 sg~~dg~i~~wd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-----------d~---~i~iwd~~~~~~~~~~  264 (340)
                      + ...+.+++..+..-+  .+++++-+ .....+++.+....+++.+.           ..   .++++|-++.+.+...
T Consensus       689 ~-~~~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~h  766 (1096)
T KOG1897|consen  689 S-ANGGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSH  766 (1096)
T ss_pred             E-ecCCceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeec
Confidence            3 345667776654322  13344433 33455666654333333322           21   2455555554443322


Q ss_pred             --ecCCcccceEEEEEcCC-CcEEEEEeC----------CCcEEEEeCCCceeeeeeccC--CcceEEEEECCCCCEEEE
Q psy15421        265 --SHDNIICGITSVAFSRS-GRLLLAGYD----------DFNCNVWDSMKTERAGILAGH--DNRVSCLGVTEDGMAVAT  329 (340)
Q Consensus       265 --~~~~~~~~i~~~~~s~~-~~~l~~g~~----------d~~i~iw~~~~~~~~~~~~~h--~~~i~~~~~s~d~~~l~s  329 (340)
                        .......++.++.|..| +.++++|+.          .|.|-+|.......+.....+  .+.+.++. --+|++|| 
T Consensus       767 ef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~-~fngkllA-  844 (1096)
T KOG1897|consen  767 EFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALV-EFNGKLLA-  844 (1096)
T ss_pred             cccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehh-hhCCeEEE-
Confidence              22233445777889877 888888753          255666654443333322222  24444442 23555554 


Q ss_pred             eeCCCcEEec
Q psy15421        330 GSWDSFLRIW  339 (340)
Q Consensus       330 ~s~D~~i~iW  339 (340)
                       +.+..|+++
T Consensus       845 -~In~~vrLy  853 (1096)
T KOG1897|consen  845 -GINQSVRLY  853 (1096)
T ss_pred             -ecCcEEEEE
Confidence             466777775

>KOG2377|consensus

Probab=94.04  E-value=1.8  Score=38.91  Aligned_cols=157  Identities=6%  Similarity=0.081  Sum_probs=90.6

Q ss_pred             EEEEEEcCCCCeEEEEeCCCeEEEEeCCC--CCeeEEee-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceE
Q psy15421         58 IYAMHWGSDSRNLVSASQDGKLIVWDSYT--TNKVHAIP-LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVR  134 (340)
Q Consensus        58 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~-~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~  134 (340)
                      -+.+-|.-.++.|++.-+ |.+.=|-+..  ......+. ...++|.++.|++|.+.+|.--.++.|.+++....+....
T Consensus        25 sngvFfDDaNkqlfavrS-ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~  103 (657)
T KOG2377|consen   25 SNGVFFDDANKQLFAVRS-GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE  103 (657)
T ss_pred             ccceeeccCcceEEEEec-CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence            344555544444443333 3344453322  12222222 2345899999999999999999999999998754333222


Q ss_pred             EEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCc-eEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCcEEEE
Q psy15421        135 VSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQ-QCASFIGHTGDVMSLSLAPDMRTFVSGA--CDASAKLW  211 (340)
Q Consensus       135 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~sg~--~dg~i~~w  211 (340)
                      ...++...+..+...+|.++..++.....| +.+|-....+ .++-...|...|.-..|+++.+.++-++  ..+++.=+
T Consensus       104 ~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf  182 (657)
T KOG2377|consen  104 YTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPF  182 (657)
T ss_pred             HHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccE
Confidence            222333344456777787766666554443 4555443332 3344556778899999999887644322  34455445


Q ss_pred             ECCCC
Q psy15421        212 DIRDG  216 (340)
Q Consensus       212 d~~~~  216 (340)
                      .++++
T Consensus       183 ~~~~~  187 (657)
T KOG2377|consen  183 HFRAG  187 (657)
T ss_pred             EEeec
Confidence            55444

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.71  E-value=4.7  Score=38.43  Aligned_cols=122  Identities=16%  Similarity=0.200  Sum_probs=72.6

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEee-CCCCcEEEEEEC--CCCCEEEEEeCCCeEEEEE
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP-LRSSWVMTCAYA--PSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~--~~~~~l~~~~~d~~v~i~~  125 (340)
                      .++..-.....-+.-+.-++.-+.-+....+.|||...+....... ...+.|..+.|.  |++..+++.|..+.|.+|.
T Consensus        23 ~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   23 STFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             EEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            3444333344444444444443344445679999998877554433 345678888775  7899999999999998885


Q ss_pred             cc-----CCCCceEEEE--eecCCC-cceEEEEEcCCCeEEEEeCCCeEEEEEC
Q psy15421        126 LK-----TREGNVRVSR--ELPGHT-GYLSCCRFLDDNQIVTSSGDMSCALWDI  171 (340)
Q Consensus       126 ~~-----~~~~~~~~~~--~~~~~~-~~v~~~~~~~~~~l~~~~~d~~v~iwd~  171 (340)
                      -.     .........+  .+..|+ ..+....|.+++.++.|+ +.++.++|-
T Consensus       103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK  155 (631)
T ss_pred             ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence            32     1111111112  223344 456777888888887765 456667664

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.45  E-value=4.6  Score=34.84  Aligned_cols=226  Identities=14%  Similarity=0.047  Sum_probs=98.1

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEe-ecCC-CcceEEEEEcCCCeEEEEeCCCeEEEEECCCC
Q psy15421         97 SSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRE-LPGH-TGYLSCCRFLDDNQIVTSSGDMSCALWDIETG  174 (340)
Q Consensus        97 ~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~-~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~  174 (340)
                      ...+..|.|..+..-+++ +..+.  |+....+......... .... ......+.|..+.-++++ ..+ +.+.....|
T Consensus        16 ~~~l~dV~F~d~~~G~~V-G~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG-~~g-~ll~T~DgG   90 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAV-GAYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVG-EPG-LLLHTTDGG   90 (302)
T ss_dssp             SS-EEEEEESSSS-EEEE-ETTTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEE-ETT-EEEEESSTT
T ss_pred             CCceEEEEEecCCEEEEE-ecCCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEc-CCc-eEEEecCCC
Confidence            356888999854444454 44554  3444333333322211 1111 123445556544334443 333 444444444


Q ss_pred             ceEEEEe---cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeee-EecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy15421        175 QQCASFI---GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQ-TFPGHESDINAVTFFPNGWAFATGSDDATC  250 (340)
Q Consensus       175 ~~~~~~~---~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i  250 (340)
                      +.=..+.   ...+....+....+....+. +..|.|..= ..-|+.-. ....-.+.+..+..+++|+++++++.-...
T Consensus        91 ~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~  168 (302)
T PF14870_consen   91 KTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFY  168 (302)
T ss_dssp             SS-EE----TT-SS-EEEEEEEETTEEEEE-ETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEE
T ss_pred             CCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEE
Confidence            4322221   12233333333333333333 334443221 12233222 223345678888899999888887654445


Q ss_pred             EEEeCcCC-cEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEe-CCCceeeee----eccCCcceEEEEECCCC
Q psy15421        251 RLFDIRAD-QELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD-SMKTERAGI----LAGHDNRVSCLGVTEDG  324 (340)
Q Consensus       251 ~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~-~~~~~~~~~----~~~h~~~i~~~~~s~d~  324 (340)
                      .-||-... -......   ....|.++.|.|++.+.+.+ ..|.++.=+ -...+....    +..-.-.+..++|.+++
T Consensus       169 ~s~~~G~~~w~~~~r~---~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~  244 (302)
T PF14870_consen  169 SSWDPGQTTWQPHNRN---SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN  244 (302)
T ss_dssp             EEE-TT-SS-EEEE-----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred             EEecCCCccceEEccC---ccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence            67775432 1222211   12359999999998876655 778887765 112221111    11122347889999998


Q ss_pred             CEEEEeeCC
Q psy15421        325 MAVATGSWD  333 (340)
Q Consensus       325 ~~l~s~s~D  333 (340)
                      ...++|+..
T Consensus       245 ~~wa~gg~G  253 (302)
T PF14870_consen  245 EIWAVGGSG  253 (302)
T ss_dssp             -EEEEESTT
T ss_pred             CEEEEeCCc
Confidence            877776644

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.37  E-value=0.81  Score=43.84  Aligned_cols=112  Identities=11%  Similarity=0.120  Sum_probs=73.3

Q ss_pred             eEEEEE--ecCCCEEEEEeCCCcEEEEeCcC-------C----cE------EEEeecCCcccceEEEEEc--CCCcEEEE
Q psy15421        229 INAVTF--FPNGWAFATGSDDATCRLFDIRA-------D----QE------LAMYSHDNIICGITSVAFS--RSGRLLLA  287 (340)
Q Consensus       229 v~~v~~--~~~~~~l~s~s~d~~i~iwd~~~-------~----~~------~~~~~~~~~~~~i~~~~~s--~~~~~l~~  287 (340)
                      |+-+.+  ..+...|+.+..||.|.+|.++.       .    ..      +.-+.......+.+.++++  ...++||+
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV  182 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV  182 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence            444433  34566899999999999996521       0    00      0001112223467889998  88999999


Q ss_pred             EeCCCcEEEEeCCCce-eee--eeccCCcceEEEEECCCC---C---EEEEeeCCCcEEecC
Q psy15421        288 GYDDFNCNVWDSMKTE-RAG--ILAGHDNRVSCLGVTEDG---M---AVATGSWDSFLRIWN  340 (340)
Q Consensus       288 g~~d~~i~iw~~~~~~-~~~--~~~~h~~~i~~~~~s~d~---~---~l~s~s~D~~i~iW~  340 (340)
                      ++....|.+|-....+ ...  .-..|...|-+|+|-++.   .   .|++++..|.+.+|+
T Consensus       183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~  244 (717)
T PF08728_consen  183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK  244 (717)
T ss_pred             ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence            9999999988643321 111  122467789999997644   2   788999999988764

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.26  E-value=4.4  Score=34.00  Aligned_cols=185  Identities=15%  Similarity=0.123  Sum_probs=110.3

Q ss_pred             cEEEEEECCCCCEEEEEeCCC--eEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCce
Q psy15421         99 WVMTCAYAPSGSFVACGGLDN--ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQ  176 (340)
Q Consensus        99 ~i~~v~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~  176 (340)
                      ....+.|..++.++-+.|..|  .++.+++.+++  ......++. .-+--.+...++..+...-.++...+||..+-+.
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~--~~~~~~l~~-~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGK--VLQSVPLPP-RYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSS--EEEEEE-TT-T--EEEEEEETTEEEEEESSSSEEEEEETTTTEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCc--EEEEEECCc-cccceeEEEECCEEEEEEecCCeEEEEccccceE
Confidence            344566767888888888777  57778877653  222333332 2222223333444444555689999999999888


Q ss_pred             EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCC--C---CCeEEEEEecCCCEEEEEeCCCcEE
Q psy15421        177 CASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGH--E---SDINAVTFFPNGWAFATGSDDATCR  251 (340)
Q Consensus       177 ~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h--~---~~v~~v~~~~~~~~l~s~s~d~~i~  251 (340)
                      +.++.- .++-..++  .+++.++.......+.++|..+.+..+.++-.  .   ..++-+.+- +|..+|-.-....|.
T Consensus       123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~  198 (264)
T PF05096_consen  123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV  198 (264)
T ss_dssp             EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred             EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence            877653 35566666  45666776667788999998877665554321  1   235667765 677888777778888


Q ss_pred             EEeCcCCcEEEEeecCC-------------cccceEEEEEcCCCcEEEEEeC
Q psy15421        252 LFDIRADQELAMYSHDN-------------IICGITSVAFSRSGRLLLAGYD  290 (340)
Q Consensus       252 iwd~~~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~g~~  290 (340)
                      ..|..+++.+..+....             ...-.+.+++.|....|..-+.
T Consensus       199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            88888887765442100             0123789999887665554433

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.23  E-value=1.9  Score=39.34  Aligned_cols=147  Identities=15%  Similarity=0.144  Sum_probs=90.6

Q ss_pred             CCCCeEE-EEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCC-------EEEEEeCCCeEEEEEccCCCCceEEE
Q psy15421         65 SDSRNLV-SASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGS-------FVACGGLDNICSIYSLKTREGNVRVS  136 (340)
Q Consensus        65 ~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~-------~l~~~~~d~~v~i~~~~~~~~~~~~~  136 (340)
                      .|.++|. .|+.-..++--|++-|+.+.+...|...  .|.|.|+.+       .-+.|-.+..|.-.|.+....++...
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            3444444 4555667777788888888888887764  567888543       22345555555555655444333222


Q ss_pred             Eeec-CCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy15421        137 RELP-GHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIR  214 (340)
Q Consensus       137 ~~~~-~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~  214 (340)
                      ..-. .-....++..-..+++++.++..|-|++||--.-..-..+.+....+..+..+.+|+.+++. +...+.+-|++
T Consensus       555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaT-Ck~yllL~d~~  632 (776)
T COG5167         555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILAT-CKNYLLLTDVP  632 (776)
T ss_pred             eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEe-ecceEEEEecc
Confidence            1110 00111222222357899999999999999975443334455666778899999999987654 45677777764

>PHA02790 Kelch-like protein; Provisional

Probab=93.22  E-value=7.2  Score=36.33  Aligned_cols=179  Identities=12%  Similarity=0.030  Sum_probs=80.0

Q ss_pred             CCCEEEEEeCCC-----eEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCC--CeEEEEECCCCceE--E
Q psy15421        108 SGSFVACGGLDN-----ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGD--MSCALWDIETGQQC--A  178 (340)
Q Consensus       108 ~~~~l~~~~~d~-----~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d--~~v~iwd~~~~~~~--~  178 (340)
                      ++..++.||.++     .+..||..+.  .+.....++....... ....++..++.|+.+  .++..||..+++-.  .
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~--~W~~~~~m~~~r~~~~-~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~  347 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISN--NWIPIPPMNSPRLYAS-GVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMP  347 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCC--EEEECCCCCchhhcce-EEEECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence            455667777543     4555665432  2222112211111111 122233344555542  45788887655321  1


Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeeeeEecCCCCC--eEEEEEecCCCEEEEEeCCCcEEEE
Q psy15421        179 SFIGHTGDVMSLSLAPDMRTFVSGACDA---SAKLWDIRDGSCKQTFPGHESD--INAVTFFPNGWAFATGSDDATCRLF  253 (340)
Q Consensus       179 ~~~~~~~~v~~~~~~~~~~~~~sg~~dg---~i~~wd~~~~~~~~~~~~h~~~--v~~v~~~~~~~~l~s~s~d~~i~iw  253 (340)
                      .+....... +++ .-+++.++.|+.++   .+..||.++++= .....-..+  -.+++ .-++..++.|+   .+..|
T Consensus       348 ~l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W-~~~~~m~~~r~~~~~~-~~~~~IYv~GG---~~e~y  420 (480)
T PHA02790        348 SLLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQW-QFGPSTYYPHYKSCAL-VFGRRLFLVGR---NAEFY  420 (480)
T ss_pred             CCCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEE-EeCCCCCCccccceEE-EECCEEEEECC---ceEEe
Confidence            111111111 222 23577778887654   466788776531 111111001  11222 33577777774   46778


Q ss_pred             eCcCCc--EEEEeecCCcccceEEEEEcCCCcEEEEEeCC-----CcEEEEeCC
Q psy15421        254 DIRADQ--ELAMYSHDNIICGITSVAFSRSGRLLLAGYDD-----FNCNVWDSM  300 (340)
Q Consensus       254 d~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-----~~i~iw~~~  300 (340)
                      |..+.+  .+..+....  .....+.  -++++.++|+.+     ..+..||..
T Consensus       421 dp~~~~W~~~~~m~~~r--~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~  470 (480)
T PHA02790        421 CESSNTWTLIDDPIYPR--DNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNR  470 (480)
T ss_pred             cCCCCcEeEcCCCCCCc--cccEEEE--ECCEEEEECCcCCCcccceEEEEECC
Confidence            876432  111111111  1122222  267888888764     235555543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.11  E-value=4.9  Score=34.11  Aligned_cols=121  Identities=19%  Similarity=0.273  Sum_probs=83.2

Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCC-CCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCC
Q psy15421        180 FIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGH-ESDINAVTFFPNGWAFATGSDDATCRLFDIRAD  258 (340)
Q Consensus       180 ~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  258 (340)
                      +.+-...++++.|+|+.+.+++......-.++=..+|+.+.+++-. -....++.+..++.+.++-=.++.+.++.+...
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            3455566999999999998887777777767766678888776421 123456777777777666666888888876643


Q ss_pred             cEEE-------Eeec-CCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCC
Q psy15421        259 QELA-------MYSH-DNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM  300 (340)
Q Consensus       259 ~~~~-------~~~~-~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~  300 (340)
                      ..+.       .+.. .+..++.-.++|+|..+.|..+-.-.-+.||...
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            2211       1111 1224567889999999999988887778887754

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=92.86  E-value=11  Score=37.33  Aligned_cols=234  Identities=13%  Similarity=0.066  Sum_probs=111.6

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCc--------EEEEEEC----------------CCCCEEEEEeCCCeEE
Q psy15421         67 SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSW--------VMTCAYA----------------PSGSFVACGGLDNICS  122 (340)
Q Consensus        67 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--------i~~v~~~----------------~~~~~l~~~~~d~~v~  122 (340)
                      +..+..++.++.|.-.|..+++.+..+......        ...+++-                ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            456777888899999999999987766433211        0112221                1344677788888777


Q ss_pred             EEEccCCCCceEEE--------EeecCCC-c--ceEEEEEcCCCeEEEEeC----------CCeEEEEECCCCceEEEEe
Q psy15421        123 IYSLKTREGNVRVS--------RELPGHT-G--YLSCCRFLDDNQIVTSSG----------DMSCALWDIETGQQCASFI  181 (340)
Q Consensus       123 i~~~~~~~~~~~~~--------~~~~~~~-~--~v~~~~~~~~~~l~~~~~----------d~~v~iwd~~~~~~~~~~~  181 (340)
                      -.|..+++......        ..+.... .  .+..-....++.++.++.          +|.|+-+|+++|+..-.+.
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence            77776654222110        0000000 0  001100112455665542          5889999999999887664


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcE
Q psy15421        182 GHTGDVMSLSLAPDMRTFVSGACDA-SAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQE  260 (340)
Q Consensus       182 ~~~~~v~~~~~~~~~~~~~sg~~dg-~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~  260 (340)
                      .-......  ..+.+.....|+... ..--+|.+.+.... -.+...    ..+....+.....-..++|.-.|.++++.
T Consensus       354 ~g~p~~~~--~~~~g~~~~~gg~n~W~~~s~D~~~glvy~-ptGn~~----pd~~g~~r~~~~n~y~~slvALD~~TGk~  426 (764)
T TIGR03074       354 PGNPDPTA--PPAPGETYTRNTPNSWSVASYDEKLGLVYL-PMGNQT----PDQWGGDRTPADEKYSSSLVALDATTGKE  426 (764)
T ss_pred             cCCCCccc--CCCCCCEeccCCCCccCceEEcCCCCeEEE-eCCCcc----ccccCCccccCcccccceEEEEeCCCCce
Confidence            21100000  011233332222221 23344444432211 011110    00100000000011234455556666665


Q ss_pred             EEEeecCCc-------ccceEEEEEcC-CCc---EEEEEeCCCcEEEEeCCCceeeee
Q psy15421        261 LAMYSHDNI-------ICGITSVAFSR-SGR---LLLAGYDDFNCNVWDSMKTERAGI  307 (340)
Q Consensus       261 ~~~~~~~~~-------~~~i~~~~~s~-~~~---~l~~g~~d~~i~iw~~~~~~~~~~  307 (340)
                      ...+....+       .....-+.+.. +|+   .++.++.+|.+.+.|..+++.+..
T Consensus       427 ~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       427 RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            544422110       11122222322 553   788999999999999998876553

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.72  E-value=3.2  Score=37.89  Aligned_cols=134  Identities=15%  Similarity=0.186  Sum_probs=84.6

Q ss_pred             CCCEEE-EEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCC-------CEEEEEeCCCcEEEEeCcC-CcEEEEee
Q psy15421        195 DMRTFV-SGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG-------WAFATGSDDATCRLFDIRA-DQELAMYS  265 (340)
Q Consensus       195 ~~~~~~-sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~-------~~l~s~s~d~~i~iwd~~~-~~~~~~~~  265 (340)
                      +..+++ .|.....+.--|++.|+.+..+.-|...  -|.|.|..       ..-+.|-++..|.-.|.+- +..+....
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            344443 5666777777788999988888877654  46677643       2235566666666666552 22222111


Q ss_pred             cCCc--ccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEee
Q psy15421        266 HDNI--ICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGS  331 (340)
Q Consensus       266 ~~~~--~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s  331 (340)
                      ....  ....++ .....+-++|+|+..|-|++||.........+.+-...|..+..+.+|.+++...
T Consensus       556 sKdY~tKn~Fss-~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC  622 (776)
T COG5167         556 SKDYKTKNKFSS-GMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC  622 (776)
T ss_pred             ehhccccccccc-cccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee
Confidence            1111  001112 1223456999999999999999765555556777788999999999999876544

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=92.70  E-value=6.9  Score=34.80  Aligned_cols=225  Identities=16%  Similarity=0.139  Sum_probs=97.5

Q ss_pred             EECCCCCEE-EEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEec
Q psy15421        104 AYAPSGSFV-ACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIG  182 (340)
Q Consensus       104 ~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~  182 (340)
                      +|.++|+.| +.+..++.-.+|-+....+....+...++ ......+....+..++-......+.-.|+++.+.-..+..
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g-~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG-DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS--B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC-CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            467788654 44555766566655544444433333222 1111222223445555566667888899988776555554


Q ss_pred             CCCCeEEEEE--cCCCCEEEEEe---CC-------------------CcEEEEECCCCeeeeEecCCCCCeEEEEEecCC
Q psy15421        183 HTGDVMSLSL--APDMRTFVSGA---CD-------------------ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG  238 (340)
Q Consensus       183 ~~~~v~~~~~--~~~~~~~~sg~---~d-------------------g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~  238 (340)
                      ....+-...|  +.++..++-.-   .|                   ..|...|+.+|+....+. -..-+.-+-|+|..
T Consensus       121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d  199 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD  199 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred             CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence            5554433444  33444443211   11                   123333555555433333 22345678888876


Q ss_pred             CEEEEEeC----CCc-EEEEeCcCC--cEEEEeecCCcccceEEEEEcCCCcEEEE-----EeCCCcEEEEeCCCceeee
Q psy15421        239 WAFATGSD----DAT-CRLFDIRAD--QELAMYSHDNIICGITSVAFSRSGRLLLA-----GYDDFNCNVWDSMKTERAG  306 (340)
Q Consensus       239 ~~l~s~s~----d~~-i~iwd~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-----g~~d~~i~iw~~~~~~~~~  306 (340)
                      ..+++-+.    +.. -|||-++..  .......+. ....+.-=-|.|||..|.-     +..+.-|.-++..+++...
T Consensus       200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~  278 (386)
T PF14583_consen  200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR  278 (386)
T ss_dssp             EEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred             CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence            66655433    332 467766532  222222221 1223444568999987664     2224456666777665432


Q ss_pred             eeccCCcceEEEEECCCCCEEEEeeCC
Q psy15421        307 ILAGHDNRVSCLGVTEDGMAVATGSWD  333 (340)
Q Consensus       307 ~~~~h~~~i~~~~~s~d~~~l~s~s~D  333 (340)
                      .+  ...+..-+-.++||++++-=+.|
T Consensus       279 ~~--~~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  279 LM--EMPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EE--EE-SEEEEEE-TTSSEEEEEE--
T ss_pred             EE--eCCceeeeEEcCCCCEEEecCCC
Confidence            21  11233445568999887754444

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=92.66  E-value=6.8  Score=34.59  Aligned_cols=12  Identities=42%  Similarity=0.612  Sum_probs=9.0

Q ss_pred             CCCcEEEEEeCC
Q psy15421        280 RSGRLLLAGYDD  291 (340)
Q Consensus       280 ~~~~~l~~g~~d  291 (340)
                      .++++++.|+.+
T Consensus       256 ~~~~Iyv~GG~~  267 (346)
T TIGR03547       256 SNGVLLVAGGAN  267 (346)
T ss_pred             ECCEEEEeecCC
Confidence            478888888754

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG2280|consensus

Probab=92.37  E-value=11  Score=36.30  Aligned_cols=187  Identities=10%  Similarity=0.131  Sum_probs=90.3

Q ss_pred             CCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC
Q psy15421         75 QDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD  154 (340)
Q Consensus        75 ~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  154 (340)
                      .-..|+|++.. |..+..+......+....|+.+..+ ++...+|++++|++........ ..-.+.....|.-|.+..+
T Consensus        62 a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeL-I~v~k~g~v~Vy~~~ge~ie~~-svg~e~~~~~I~ec~~f~~  138 (829)
T KOG2280|consen   62 ARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEEL-ICVQKDGTVHVYGLLGEFIESN-SVGFESQMSDIVECRFFHN  138 (829)
T ss_pred             cceeEEEEecc-ccchHHHHhcCCCeeeecccCCceE-EEEeccceEEEeecchhhhccc-ccccccccCceeEEEEecC
Confidence            34568888864 5544444333345667788866554 5678999999999864321110 1111223334555555556


Q ss_pred             CeEEEEeCCCeEEEEECCCCceEEEEec---CCCCeEEEEEcCCC-CEEEEEeCCCcE--EEEECCCCe-eeeEecCCCC
Q psy15421        155 NQIVTSSGDMSCALWDIETGQQCASFIG---HTGDVMSLSLAPDM-RTFVSGACDASA--KLWDIRDGS-CKQTFPGHES  227 (340)
Q Consensus       155 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~-~~~~sg~~dg~i--~~wd~~~~~-~~~~~~~h~~  227 (340)
                      |..+...++..+.+-+.+... ...+..   ...+..|-...+++ +...--..|-.|  .++...+.. ....+....+
T Consensus       139 GVavlt~~g~v~~i~~~~~~~-~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~  217 (829)
T KOG2280|consen  139 GVAVLTVSGQVILINGVEEPK-LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS  217 (829)
T ss_pred             ceEEEecCCcEEEEcCCCcch-hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence            654443333333344333211 111111   11111222222221 111000111000  111111111 0111211224


Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEee
Q psy15421        228 DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS  265 (340)
Q Consensus       228 ~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  265 (340)
                      .+..+.++|+.++++--..+|.|.+-+..-.+.+..+.
T Consensus       218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            57788999999999999999999988877655554443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.33  E-value=0.84  Score=26.29  Aligned_cols=31  Identities=13%  Similarity=0.202  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCC---EEEEEeCCCcEEEEECCCC
Q psy15421        186 DVMSLSLAPDMR---TFVSGACDASAKLWDIRDG  216 (340)
Q Consensus       186 ~v~~~~~~~~~~---~~~sg~~dg~i~~wd~~~~  216 (340)
                      .+.++.|+|+..   +|+-.-.-|.|.++|++++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            478999998544   7777778899999999853

It contains a characteristic DLL sequence motif.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.30  E-value=9.8  Score=35.60  Aligned_cols=117  Identities=13%  Similarity=0.371  Sum_probs=73.1

Q ss_pred             CccCcEEEEEEcCC----CCeEEEEeCCCeEEEEeCC-----CCCeeEEeeC-C--CCc--EEEEEECCCCCEEEEEeCC
Q psy15421         53 GHLAKIYAMHWGSD----SRNLVSASQDGKLIVWDSY-----TTNKVHAIPL-R--SSW--VMTCAYAPSGSFVACGGLD  118 (340)
Q Consensus        53 ~h~~~v~~~~~s~~----~~~l~s~~~d~~i~iwd~~-----~~~~~~~~~~-~--~~~--i~~v~~~~~~~~l~~~~~d  118 (340)
                      |....|..++|.|-    .+.+++.-..+.|.+|-+.     ..+.+..... .  .-+  -..+.|+|....|+.-...
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~  133 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR  133 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence            44568999999985    4578888999999999764     2232221110 0  111  1356799999888877666


Q ss_pred             CeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEE-EeCCCeEEEEECC
Q psy15421        119 NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVT-SSGDMSCALWDIE  172 (340)
Q Consensus       119 ~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~-~~~d~~v~iwd~~  172 (340)
                      ..-.++++.......  ...+ ...+.+.|.+|..++ +|+. .++.-.-.+||-.
T Consensus       134 dvSV~~sV~~d~srV--kaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  134 DVSVLPSVHCDSSRV--KADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ceeEeeeeeeCCceE--EEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            655566665543332  2233 346788999997665 4543 3444456688854

>KOG4499|consensus

Probab=92.30  E-value=5.5  Score=32.67  Aligned_cols=146  Identities=10%  Similarity=0.052  Sum_probs=83.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCC--------CCeEEEEEecCCCE-EEEEeCCCcEEEEeCc
Q psy15421        186 DVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE--------SDINAVTFFPNGWA-FATGSDDATCRLFDIR  256 (340)
Q Consensus       186 ~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~--------~~v~~v~~~~~~~~-l~s~s~d~~i~iwd~~  256 (340)
                      ..+.-..+|+|++++-.-.|-.- .+....+.+..-+.+|.        .--+.++|+.+.+. ..+-+.+-+|.-||..
T Consensus       110 R~NDgkvdP~Gryy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd  188 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD  188 (310)
T ss_pred             ccccCccCCCCceeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecC
Confidence            34556678999886532233111 11112222222233332        22357888877554 4566667778778843


Q ss_pred             --CCc-----EEEEeec--CCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCC--CC
Q psy15421        257 --ADQ-----ELAMYSH--DNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTED--GM  325 (340)
Q Consensus       257 --~~~-----~~~~~~~--~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d--~~  325 (340)
                        ++.     .+..+..  .......-.++...+|++.++....++|.-.|..+++.+.++.--...|+|++|-..  .-
T Consensus       189 ~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~  268 (310)
T KOG4499|consen  189 CPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDI  268 (310)
T ss_pred             CCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccE
Confidence              221     1111111  000001223455668889999999999999999999998877766889999999654  23


Q ss_pred             EEEEeeC
Q psy15421        326 AVATGSW  332 (340)
Q Consensus       326 ~l~s~s~  332 (340)
                      +.+++..
T Consensus       269 ~yvT~aa  275 (310)
T KOG4499|consen  269 LYVTTAA  275 (310)
T ss_pred             EEEEehh
Confidence            4445443

>KOG4460|consensus

Probab=92.15  E-value=7  Score=35.96  Aligned_cols=93  Identities=18%  Similarity=0.241  Sum_probs=49.3

Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEE
Q psy15421        100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCAS  179 (340)
Q Consensus       100 i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~  179 (340)
                      |.-+..++.|..++..|.+|.+..+-.+. -+.-   ..+.-....|.|-.+.-+.++++.+                  
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~r-wG~~---s~~eDgk~~v~CRt~~i~~~~ftss------------------  163 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVMELPKR-WGKN---SEFEDGKSTVNCRTTPVAERFFTSS------------------  163 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEEEchhh-cCcc---ceecCCCceEEEEeecccceeeccC------------------
Confidence            55677888999999999999776554221 1110   0011111223332222222222211                  


Q ss_pred             EecCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEECCCCe
Q psy15421        180 FIGHTGDVMSLSLAPDM---RTFVSGACDASAKLWDIRDGS  217 (340)
Q Consensus       180 ~~~~~~~v~~~~~~~~~---~~~~sg~~dg~i~~wd~~~~~  217 (340)
                         ..-.+..++|+|++   ..++.-+.|..||+||+...+
T Consensus       164 ---~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  164 ---TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             ---CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence               11125566777765   456666778888888876543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.11  E-value=1.4  Score=36.16  Aligned_cols=63  Identities=19%  Similarity=0.184  Sum_probs=48.2

Q ss_pred             EEcCCCcEEEEEeCCCcEEEEeCCCceeeee-------ec-------cCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        277 AFSRSGRLLLAGYDDFNCNVWDSMKTERAGI-------LA-------GHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       277 ~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~-------~~-------~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .+...+++|++-+.+|.+++||+.+.+.+..       +.       .....|..+.++.+|.-|++=+ +|..+.|+
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~   93 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS   93 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence            3556789999999999999999988765432       22       3456788999999998877766 56777775

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=91.67  E-value=10  Score=34.43  Aligned_cols=145  Identities=16%  Similarity=0.149  Sum_probs=82.8

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCC-----eeEEeeCCCCcEEEEEECC----CCCEEEEEeCCCeEEEEEccCCCCc-----
Q psy15421         67 SRNLVSASQDGKLIVWDSYTTN-----KVHAIPLRSSWVMTCAYAP----SGSFVACGGLDNICSIYSLKTREGN-----  132 (340)
Q Consensus        67 ~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~i~~v~~~~----~~~~l~~~~~d~~v~i~~~~~~~~~-----  132 (340)
                      ...|+.||..|.++|++.....     .+.+.+. ..+|..+...+    .....++.=.-+.+.||.+...++.     
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l-~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL-KDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEec-CCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            3579999999999999875433     2222222 35677765442    2222333356677788887443322     


Q ss_pred             eEEEEeecCCC---cceE--EEEEcC-C--CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q psy15421        133 VRVSRELPGHT---GYLS--CCRFLD-D--NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC  204 (340)
Q Consensus       133 ~~~~~~~~~~~---~~v~--~~~~~~-~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~  204 (340)
                      ......+-.|.   ...+  .-.|.. .  ..+..=+-||++.+++-+.-.....+ ...--.-.+++.|....|++++.
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l-p~~llPgPl~Y~~~tDsfvt~ss  194 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL-PDFLLPGPLCYCPRTDSFVTASS  194 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc-CCCCCCcCeEEeecCCEEEEecC
Confidence            11111111121   1111  122221 1  23445577999999998754322222 22233456788888889999999


Q ss_pred             CCcEEEEEC
Q psy15421        205 DASAKLWDI  213 (340)
Q Consensus       205 dg~i~~wd~  213 (340)
                      +..+.-|..
T Consensus       195 s~~l~~Yky  203 (418)
T PF14727_consen  195 SWTLECYKY  203 (418)
T ss_pred             ceeEEEecH
Confidence            999988864

>PRK10115 protease 2; Provisional

Probab=91.48  E-value=15  Score=35.99  Aligned_cols=195  Identities=13%  Similarity=0.016  Sum_probs=92.2

Q ss_pred             cEEEEEEcCCCCeEEEEe-CC----CeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC------CeEEEEE
Q psy15421         57 KIYAMHWGSDSRNLVSAS-QD----GKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD------NICSIYS  125 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~-~d----~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d------~~v~i~~  125 (340)
                      .+..+.|+||+++|+-+- .+    -.|++-|+.+++.+...-...  -..++|++|+..|+....+      ..+..++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            366778999999877442 22    347788888776332211111  1458999998866655432      2455566


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEc-CCCeEEE-Ee--CCCeEEEEECC--CCceEEEEecCCCCeEEEEEcCCCCEE
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFL-DDNQIVT-SS--GDMSCALWDIE--TGQQCASFIGHTGDVMSLSLAPDMRTF  199 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~-~~--~d~~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~  199 (340)
                      +.++...-.....-......+ ..... ++..++. ..  .++.+.+++..  .++. ..+..+...+..-..+....++
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~-~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ly  283 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYV-SLHKTTSKHYVVIHLASATTSEVLLLDAELADAEP-FVFLPRRKDHEYSLDHYQHRFY  283 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEE-EEEEcCCCCEEEEEEECCccccEEEEECcCCCCCc-eEEEECCCCCEEEEEeCCCEEE
Confidence            655421212222211111222 22223 3343333 22  24578888842  3332 2222232222211123333333


Q ss_pred             EEEe---CCCcEEEEECCCCeeeeEecCC-C-CCeEEEEEecCCCEEEEEeCCCcEEEEeCc
Q psy15421        200 VSGA---CDASAKLWDIRDGSCKQTFPGH-E-SDINAVTFFPNGWAFATGSDDATCRLFDIR  256 (340)
Q Consensus       200 ~sg~---~dg~i~~wd~~~~~~~~~~~~h-~-~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  256 (340)
                      +...   ....|...++........+-.+ . ..+..+.++ .+..+++...++.-+++-+.
T Consensus       284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            3222   2233444444421112233334 3 367788887 34566677777776666543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=91.39  E-value=11  Score=34.16  Aligned_cols=232  Identities=18%  Similarity=0.171  Sum_probs=94.6

Q ss_pred             CcEEEEEEc-----------CCCCeEEEEe-CCCeEEEEeCCCCC----eeEEeeC---C----CCcEEEEEECCCCCEE
Q psy15421         56 AKIYAMHWG-----------SDSRNLVSAS-QDGKLIVWDSYTTN----KVHAIPL---R----SSWVMTCAYAPSGSFV  112 (340)
Q Consensus        56 ~~v~~~~~s-----------~~~~~l~s~~-~d~~i~iwd~~~~~----~~~~~~~---~----~~~i~~v~~~~~~~~l  112 (340)
                      ++....-|+           .+.++|+..+ ....|+|.|+.+..    ..+.+..   +    -....++-.-|+|..+
T Consensus        65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~im  144 (461)
T PF05694_consen   65 DELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIM  144 (461)
T ss_dssp             --B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EE
T ss_pred             CccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEE
Confidence            566666675           2456666666 67889999987432    1222221   1    1234456667888777


Q ss_pred             EEE--eCC----CeEEEEEccCCCCceEEEEeec-CCCcceEEEEEcCC-CeEEEEe--------------------CCC
Q psy15421        113 ACG--GLD----NICSIYSLKTREGNVRVSRELP-GHTGYLSCCRFLDD-NQIVTSS--------------------GDM  164 (340)
Q Consensus       113 ~~~--~~d----~~v~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~l~~~~--------------------~d~  164 (340)
                      +++  +.+    +-+.+.|-.+.+  +.-..... +...+-..+.|.+. +.+++..                    ...
T Consensus       145 IS~lGd~~G~g~Ggf~llD~~tf~--v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~  222 (461)
T PF05694_consen  145 ISALGDADGNGPGGFVLLDGETFE--VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGH  222 (461)
T ss_dssp             EEEEEETTS-S--EEEEE-TTT----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--
T ss_pred             EEeccCCCCCCCCcEEEEcCcccc--ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccC
Confidence            764  222    234444433211  11000111 11112222333332 3444443                    236


Q ss_pred             eEEEEECCCCceEEEEecCCC--CeEEEEEc--CCCCE-EEEEeCCCcEEEEEC-CCCe----eeeEecCC---------
Q psy15421        165 SCALWDIETGQQCASFIGHTG--DVMSLSLA--PDMRT-FVSGACDASAKLWDI-RDGS----CKQTFPGH---------  225 (340)
Q Consensus       165 ~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~--~~~~~-~~sg~~dg~i~~wd~-~~~~----~~~~~~~h---------  225 (340)
                      ++.+||+.+.+.++++.--..  -+..+.|.  |+..+ |+.+.-..+|..|-- +.++    .+..++..         
T Consensus       223 ~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~  302 (461)
T PF05694_consen  223 SLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPE  302 (461)
T ss_dssp             EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---G
T ss_pred             eEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccc
Confidence            899999999998887753222  25566664  44444 444444566655432 3332    11122110         


Q ss_pred             --------CCCeEEEEEecCCCEEE-EEeCCCcEEEEeCcCCcEEEEeec---C--------------CcccceEEEEEc
Q psy15421        226 --------ESDINAVTFFPNGWAFA-TGSDDATCRLFDIRADQELAMYSH---D--------------NIICGITSVAFS  279 (340)
Q Consensus       226 --------~~~v~~v~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~---~--------------~~~~~i~~~~~s  279 (340)
                              ..-|+.|.++.|.++|. ++--+|.++.||+...........   .              ....+..-+..|
T Consensus       303 ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS  382 (461)
T PF05694_consen  303 MLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLS  382 (461)
T ss_dssp             GGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-
T ss_pred             cccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEc
Confidence                    23468899999988765 555699999999986433222211   0              111234667788


Q ss_pred             CCCcEEEEEe
Q psy15421        280 RSGRLLLAGY  289 (340)
Q Consensus       280 ~~~~~l~~g~  289 (340)
                      .||+.|....
T Consensus       383 ~DGkRlYvTn  392 (461)
T PF05694_consen  383 LDGKRLYVTN  392 (461)
T ss_dssp             TTSSEEEEE-
T ss_pred             cCCeEEEEEe
Confidence            8888776643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.24  E-value=2.4  Score=34.75  Aligned_cols=64  Identities=13%  Similarity=0.205  Sum_probs=47.3

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCeeeeEe-------c-------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCc
Q psy15421        192 LAPDMRTFVSGACDASAKLWDIRDGSCKQTF-------P-------GHESDINAVTFFPNGWAFATGSDDATCRLFDIR  256 (340)
Q Consensus       192 ~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~-------~-------~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  256 (340)
                      +..++.++++-..+|.+++||+.+++++..-       .       .....|..+.+..+|.-+++-+ +|..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            3456778889999999999999988754321       1       2445678888888888777765 5788888754

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.17  E-value=16  Score=35.80  Aligned_cols=77  Identities=19%  Similarity=0.252  Sum_probs=49.6

Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEccC-C------CCceE-EEEee--------cCCCcceEEEEEcCC----CeEE
Q psy15421         99 WVMTCAYAPSGSFVACGGLDNICSIYSLKT-R------EGNVR-VSREL--------PGHTGYLSCCRFLDD----NQIV  158 (340)
Q Consensus        99 ~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~-~------~~~~~-~~~~~--------~~~~~~v~~~~~~~~----~~l~  158 (340)
                      .|..+.++|+|.+++..|..+.+.+.-.+. +      ++... ..++.        ..+...|..+.|+|.    ..|+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            477888999999999999988655543321 0      01111 11111        123456777888753    4677


Q ss_pred             EEeCCCeEEEEECCCCc
Q psy15421        159 TSSGDMSCALWDIETGQ  175 (340)
Q Consensus       159 ~~~~d~~v~iwd~~~~~  175 (340)
                      .=..|+++++||+...+
T Consensus       166 vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  166 VLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEecCCEEEEEecCCCC
Confidence            77889999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.11  E-value=10  Score=33.37  Aligned_cols=233  Identities=18%  Similarity=0.237  Sum_probs=112.2

Q ss_pred             EEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCe---eEEee----CCCCcEEEEEECCC---CCEEEEEeC-C--------
Q psy15421         58 IYAMHWGSDSRNLVSASQDGKLIVWDSYTTNK---VHAIP----LRSSWVMTCAYAPS---GSFVACGGL-D--------  118 (340)
Q Consensus        58 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~----~~~~~i~~v~~~~~---~~~l~~~~~-d--------  118 (340)
                      -++|+|.||+..+++ -..|.|++.+ .++..   +..+.    ....-...++++|+   ..+|..... .        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            478999999887765 6699999998 33332   22221    22345789999994   233333222 1        


Q ss_pred             CeEEEEEccCCCCce----EEEEeecC---CCcceEEEEEcCCCeEEEEeCCC--------------eEEEEECCCCc--
Q psy15421        119 NICSIYSLKTREGNV----RVSRELPG---HTGYLSCCRFLDDNQIVTSSGDM--------------SCALWDIETGQ--  175 (340)
Q Consensus       119 ~~v~i~~~~~~~~~~----~~~~~~~~---~~~~v~~~~~~~~~~l~~~~~d~--------------~v~iwd~~~~~--  175 (340)
                      ..|.-|.........    .+....+.   .......+.|.+++.|..+.+|.              .|.-.+... +  
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p  160 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIP  160 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCC
Confidence            233334443331111    12222232   12223447777777654433322              222222211 1  


Q ss_pred             -----------eEEEE-ecCCCCeEEEEEcCC-CCEEEE-EeCCCcEEEEECCCCe------------------------
Q psy15421        176 -----------QCASF-IGHTGDVMSLSLAPD-MRTFVS-GACDASAKLWDIRDGS------------------------  217 (340)
Q Consensus       176 -----------~~~~~-~~~~~~v~~~~~~~~-~~~~~s-g~~dg~i~~wd~~~~~------------------------  217 (340)
                                 ....+ .++. ....++|+|. +.++++ -+.|+.=.|--+..+.                        
T Consensus       161 ~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~  239 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC  239 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred             CCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence                       00001 1122 2457899998 665554 2233322222222211                        


Q ss_pred             -----eeeEecCCCCCeEEEEEec-------CCCEEEEEeCCCcEEEEeCcCCcEEEEeec--CCcccceEEEEEcCCCc
Q psy15421        218 -----CKQTFPGHESDINAVTFFP-------NGWAFATGSDDATCRLFDIRADQELAMYSH--DNIICGITSVAFSRSGR  283 (340)
Q Consensus       218 -----~~~~~~~h~~~v~~v~~~~-------~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~  283 (340)
                           +...+..| ..+..+.|.+       .|.+|+..-..+.|....+.....+.....  ......+..+++.|||.
T Consensus       240 ~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~  318 (331)
T PF07995_consen  240 PGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA  318 (331)
T ss_dssp             TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred             CCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence                 11223333 4456666653       345666666667777777764433322111  22223588999999999


Q ss_pred             EEEEEeCCCcEE
Q psy15421        284 LLLAGYDDFNCN  295 (340)
Q Consensus       284 ~l~~g~~d~~i~  295 (340)
                      ++++-..+|.|.
T Consensus       319 Lyv~~d~~G~iy  330 (331)
T PF07995_consen  319 LYVSDDSDGKIY  330 (331)
T ss_dssp             EEEEE-TTTTEE
T ss_pred             EEEEECCCCeEe
Confidence            999888888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1900|consensus

Probab=91.11  E-value=4.5  Score=41.20  Aligned_cols=140  Identities=14%  Similarity=0.230  Sum_probs=85.4

Q ss_pred             eCCCeEEEEeCCCCCeeEEeeCCCCcEEEEE--------ECCCCCEEEEEeCCCeEEEEEccCCC----C-ceEEEEeec
Q psy15421         74 SQDGKLIVWDSYTTNKVHAIPLRSSWVMTCA--------YAPSGSFVACGGLDNICSIYSLKTRE----G-NVRVSRELP  140 (340)
Q Consensus        74 ~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~--------~~~~~~~l~~~~~d~~v~i~~~~~~~----~-~~~~~~~~~  140 (340)
                      +-|..+.+|+.+++.....+.+-...|..|.        |-|.=+++...+.-.-+.++-+.-.+    . ...-..+++
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            5677899999988776666655555555443        22233444444444444444332111    1 111112333


Q ss_pred             CCCcceEEEEEcCCCeEEEEeCCCeEEEEEC----CCC---ceE-----------------EEEe-cCCCCeEEEEEcCC
Q psy15421        141 GHTGYLSCCRFLDDNQIVTSSGDMSCALWDI----ETG---QQC-----------------ASFI-GHTGDVMSLSLAPD  195 (340)
Q Consensus       141 ~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~----~~~---~~~-----------------~~~~-~~~~~v~~~~~~~~  195 (340)
                      .....|.++.+.++|+++.++.|+  .+|.+    ..+   +.+                 ..+. .+.++|..+.+...
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S  253 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS  253 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence            445678888888888888888888  45543    221   100                 1122 45678899999888


Q ss_pred             CCEEEEEeCCCcEEEEECCC
Q psy15421        196 MRTFVSGACDASAKLWDIRD  215 (340)
Q Consensus       196 ~~~~~sg~~dg~i~~wd~~~  215 (340)
                      -+.+++=+..|+|..||+..
T Consensus       254 R~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  254 RNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cceeeeeccCceEEEEEccC
Confidence            88899999999999999976

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=90.80  E-value=1.9  Score=38.87  Aligned_cols=90  Identities=11%  Similarity=0.082  Sum_probs=57.6

Q ss_pred             EEEEecCCCEEEEEeCCCcEEE---EeCcCCc---EEE------EeecC--CcccceEEEEE--------cCCCcEEEEE
Q psy15421        231 AVTFFPNGWAFATGSDDATCRL---FDIRADQ---ELA------MYSHD--NIICGITSVAF--------SRSGRLLLAG  288 (340)
Q Consensus       231 ~v~~~~~~~~l~s~s~d~~i~i---wd~~~~~---~~~------~~~~~--~~~~~i~~~~~--------s~~~~~l~~g  288 (340)
                      .++.+|++..+|.+..++.+.+   |+.....   ...      .+..+  .....+.++-+        .||...+++|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4677888888888877777655   5432111   111      11111  12233444445        2567899999


Q ss_pred             eCCCcEEEEeCCCceeeeeeccCCcceEEEEEC
Q psy15421        289 YDDFNCNVWDSMKTERAGILAGHDNRVSCLGVT  321 (340)
Q Consensus       289 ~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s  321 (340)
                      ..+|.+++|. +++..+..-.-|.++|..+.+-
T Consensus        86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             ecccEEEEEe-ccchHHHHHhcCccceEEEEec
Confidence            9999999998 6777666556688888888764

>KOG4460|consensus

Probab=90.65  E-value=6.9  Score=36.01  Aligned_cols=75  Identities=11%  Similarity=0.020  Sum_probs=48.8

Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEe---------CcCCcEEEEee---------cCCcccceEEEEEcCCC---cEEEE
Q psy15421        229 INAVTFFPNGWAFATGSDDATCRLFD---------IRADQELAMYS---------HDNIICGITSVAFSRSG---RLLLA  287 (340)
Q Consensus       229 v~~v~~~~~~~~l~s~s~d~~i~iwd---------~~~~~~~~~~~---------~~~~~~~i~~~~~s~~~---~~l~~  287 (340)
                      |..|..++.|..++-.|.+|.+-++=         ++.++......         .....-.+..++|||++   ..|..
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i  185 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL  185 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence            55677788999999999999876542         12222221110         11111236788999986   57777


Q ss_pred             EeCCCcEEEEeCCCce
Q psy15421        288 GYDDFNCNVWDSMKTE  303 (340)
Q Consensus       288 g~~d~~i~iw~~~~~~  303 (340)
                      =+.|..||+|+..+..
T Consensus       186 L~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  186 LTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EecCcEEEEEecCCcc
Confidence            7889999999976543

>PRK13684 Ycf48-like protein; Provisional

Probab=90.59  E-value=11  Score=33.09  Aligned_cols=150  Identities=13%  Similarity=0.134  Sum_probs=79.2

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceE
Q psy15421         98 SWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQC  177 (340)
Q Consensus        98 ~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~  177 (340)
                      ..+..+.+.|++.+++++......+.++  .+.....  .....-...+..+.+.+++.++..+..|.+.+=....+..-
T Consensus       173 g~~~~i~~~~~g~~v~~g~~G~i~~s~~--~gg~tW~--~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVSSRGNFYSTWE--PGQTAWT--PHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESW  248 (334)
T ss_pred             ceEEEEEECCCCeEEEEeCCceEEEEcC--CCCCeEE--EeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCcc
Confidence            4577888899887776655443222221  1211221  11122234566666766776666666776654333333321


Q ss_pred             EEEec----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEec---CCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy15421        178 ASFIG----HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP---GHESDINAVTFFPNGWAFATGSDDATC  250 (340)
Q Consensus       178 ~~~~~----~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s~s~d~~i  250 (340)
                      .....    -...+..+.+.|++..++ ++.+|.+.. ....++.-...+   .-......+.|..+++.+++| ..|.|
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~i  325 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVL  325 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCceE
Confidence            11111    112467888998777655 456676653 334444333332   122346777777767666655 56887


Q ss_pred             EEEe
Q psy15421        251 RLFD  254 (340)
Q Consensus       251 ~iwd  254 (340)
                      --|+
T Consensus       326 l~~~  329 (334)
T PRK13684        326 LRYV  329 (334)
T ss_pred             EEec
Confidence            6664

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=90.26  E-value=20  Score=35.44  Aligned_cols=111  Identities=16%  Similarity=0.179  Sum_probs=70.8

Q ss_pred             CCeEEEEeCCCeEEEEECCCCceEEEEecCCCC--------eEEEEEc----------------CCCCEEEEEeCCCcEE
Q psy15421        154 DNQIVTSSGDMSCALWDIETGQQCASFIGHTGD--------VMSLSLA----------------PDMRTFVSGACDASAK  209 (340)
Q Consensus       154 ~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~--------v~~~~~~----------------~~~~~~~sg~~dg~i~  209 (340)
                      ++.+..++.++.|.-.|..+|+.+-++......        +..+++.                .....++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            567777888899999999999887766432210        1122221                1344778888999999


Q ss_pred             EEECCCCeeeeEecCCCCCeE-------------EEEEec--CCCEEEEEeC----------CCcEEEEeCcCCcEEEEe
Q psy15421        210 LWDIRDGSCKQTFPGHESDIN-------------AVTFFP--NGWAFATGSD----------DATCRLFDIRADQELAMY  264 (340)
Q Consensus       210 ~wd~~~~~~~~~~~~h~~~v~-------------~v~~~~--~~~~l~s~s~----------d~~i~iwd~~~~~~~~~~  264 (340)
                      -.|.++|+..-.+.. .+.+.             .+.-.|  .+..++.|+.          +|.|+-+|.++++.+..+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999987765531 11110             011112  1234555543          688999999999988766


Q ss_pred             e
Q psy15421        265 S  265 (340)
Q Consensus       265 ~  265 (340)
                      .
T Consensus       353 ~  353 (764)
T TIGR03074       353 D  353 (764)
T ss_pred             e
Confidence            4

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.92  E-value=15  Score=33.28  Aligned_cols=147  Identities=10%  Similarity=0.011  Sum_probs=80.8

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCc-----E
Q psy15421        187 VMSLSLAPDMRTFVSGACDASAKLWDIRDGS-CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ-----E  260 (340)
Q Consensus       187 v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~-----~  260 (340)
                      ...+...+++.+++.|..-.-++-||-.... ..... .....+.++.+.+++..++.+ .+|.+.. ....++     .
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~-~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~  317 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNR-ASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFD  317 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecC-CCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence            4455667777766665444333445432110 11112 223468899999998777655 5666543 333332     1


Q ss_pred             EEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeee---ccCCcceEEEEECCCCCEEEEeeCCCcEE
Q psy15421        261 LAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGIL---AGHDNRVSCLGVTEDGMAVATGSWDSFLR  337 (340)
Q Consensus       261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~---~~h~~~i~~~~~s~d~~~l~s~s~D~~i~  337 (340)
                      ............+..+.|.+++..+++| .+|.+.... ..++.-...   .+-....+.+.|.++++-+++| .+|.|.
T Consensus       318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il  394 (398)
T PLN00033        318 FEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLL  394 (398)
T ss_pred             eeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEE
Confidence            2222121122348889999887776665 566665543 333332222   2234678899998887766655 477776


Q ss_pred             ec
Q psy15421        338 IW  339 (340)
Q Consensus       338 iW  339 (340)
                      -|
T Consensus       395 ~~  396 (398)
T PLN00033        395 RY  396 (398)
T ss_pred             Ee
Confidence            54

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.78  E-value=1.4  Score=25.36  Aligned_cols=31  Identities=16%  Similarity=0.288  Sum_probs=24.9

Q ss_pred             CCeEEEEEecCCC---EEEEEeCCCcEEEEeCcC
Q psy15421        227 SDINAVTFFPNGW---AFATGSDDATCRLFDIRA  257 (340)
Q Consensus       227 ~~v~~v~~~~~~~---~l~s~s~d~~i~iwd~~~  257 (340)
                      +.+.++.|+|...   .|+-.-.-+.+.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999998644   777777779999999985

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.68  E-value=12  Score=36.74  Aligned_cols=72  Identities=24%  Similarity=0.236  Sum_probs=45.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCC---------Cee---eeEe--------cCCCCCeEEEEEecC---CCEEE
Q psy15421        186 DVMSLSLAPDMRTFVSGACDASAKLWDIRD---------GSC---KQTF--------PGHESDINAVTFFPN---GWAFA  242 (340)
Q Consensus       186 ~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~---------~~~---~~~~--------~~h~~~v~~v~~~~~---~~~l~  242 (340)
                      .|..+.++|+|.+++..|..|-+.+.=.+.         +..   .+++        ..+...|..+.|+|.   +.+|+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            477888999999888777655444332111         110   1111        123446778888885   47888


Q ss_pred             EEeCCCcEEEEeCcC
Q psy15421        243 TGSDDATCRLFDIRA  257 (340)
Q Consensus       243 s~s~d~~i~iwd~~~  257 (340)
                      .-..|+++|+||+..
T Consensus       166 vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  166 VLTSDNTLRLYDISD  180 (717)
T ss_pred             EEecCCEEEEEecCC
Confidence            888888888888853

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.12  E-value=13  Score=31.56  Aligned_cols=233  Identities=10%  Similarity=0.084  Sum_probs=115.3

Q ss_pred             cEEEEEEcCCCCe-EEEEeCCCe-EEEEeCCCCCeeEEeeCCCCcE--EEEEECCCCCEEEEEeCC-----CeEEEEEcc
Q psy15421         57 KIYAMHWGSDSRN-LVSASQDGK-LIVWDSYTTNKVHAIPLRSSWV--MTCAYAPSGSFVACGGLD-----NICSIYSLK  127 (340)
Q Consensus        57 ~v~~~~~s~~~~~-l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~i--~~v~~~~~~~~l~~~~~d-----~~v~i~~~~  127 (340)
                      ....+.|+|..+. ++-+=.=|+ ..++|..+.+.+.++......-  ---.|+|||.+|+..-.|     |.|-|||.+
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            3446777776554 333333333 5678888777666554332211  123599999999875433     678899987


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCC-------------------eEEEEECCCCceEEEE--e--cCC
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDM-------------------SCALWDIETGQQCASF--I--GHT  184 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~-------------------~v~iwd~~~~~~~~~~--~--~~~  184 (340)
                      .+-   ....+++.|.---.-+.+..++.++...+.|                   ++.+.|..+|+.+...  .  -+.
T Consensus       149 ~~f---qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~  225 (366)
T COG3490         149 EGF---QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ  225 (366)
T ss_pred             ccc---ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence            432   2234455554433344455566544433221                   2333343344333221  1  123


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcE-----EEEECCCCeeeeEecC-------CCCCeEEEEEecCCCEEEEEeCCC-cEE
Q psy15421        185 GDVMSLSLAPDMRTFVSGACDASA-----KLWDIRDGSCKQTFPG-------HESDINAVTFFPNGWAFATGSDDA-TCR  251 (340)
Q Consensus       185 ~~v~~~~~~~~~~~~~sg~~dg~i-----~~wd~~~~~~~~~~~~-------h~~~v~~v~~~~~~~~l~s~s~d~-~i~  251 (340)
                      -.+..++..+|++..+-+-..|.-     .+=-.+.++.+.-++-       ....|-+|+...+...++..+..| ..-
T Consensus       226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v  305 (366)
T COG3490         226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV  305 (366)
T ss_pred             cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence            345666666666544332111110     0000111222221211       112355677775544554444444 467


Q ss_pred             EEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEe
Q psy15421        252 LFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD  298 (340)
Q Consensus       252 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~  298 (340)
                      +||..++..+..-....      +.-.-+...=+++.+.+|.|.+++
T Consensus       306 i~da~tG~vv~~a~l~d------aaGva~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         306 IWDAATGAVVSEAALPD------AAGVAAAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             EEEcCCCcEEecccccc------cccceeccCceEEecCCceEEecc
Confidence            99999887665432211      112223444556667778888775

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.67  E-value=7.9  Score=37.46  Aligned_cols=105  Identities=10%  Similarity=0.096  Sum_probs=70.1

Q ss_pred             EcCCCeEEEEeCCCeEEEEECCC-------C----ce------E--EEEecCCCCeEEEEEc--CCCCEEEEEeCCCcEE
Q psy15421        151 FLDDNQIVTSSGDMSCALWDIET-------G----QQ------C--ASFIGHTGDVMSLSLA--PDMRTFVSGACDASAK  209 (340)
Q Consensus       151 ~~~~~~l~~~~~d~~v~iwd~~~-------~----~~------~--~~~~~~~~~v~~~~~~--~~~~~~~sg~~dg~i~  209 (340)
                      +.....|+.+..||.|.+|..+.       .    ..      +  .-.......++.++++  ...+++|+++....|.
T Consensus       111 lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VT  190 (717)
T PF08728_consen  111 LGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVT  190 (717)
T ss_pred             cCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEE
Confidence            33455688899999999997521       0    00      0  0112244578999998  7788888888889998


Q ss_pred             EEECCCC--ee-eeEecCCCCCeEEEEEecCC------CEEEEEeCCCcEEEEeC
Q psy15421        210 LWDIRDG--SC-KQTFPGHESDINAVTFFPNG------WAFATGSDDATCRLFDI  255 (340)
Q Consensus       210 ~wd~~~~--~~-~~~~~~h~~~v~~v~~~~~~------~~l~s~s~d~~i~iwd~  255 (340)
                      +|=+...  +. ...-..|...|.+|+|-++.      ..+++++-.|.+.+|++
T Consensus       191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8855432  11 11011255678999998743      26778888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4499|consensus

Probab=88.63  E-value=12  Score=30.71  Aligned_cols=94  Identities=17%  Similarity=0.170  Sum_probs=63.3

Q ss_pred             CCeEEEEEcCCCC-EEEEEeCCCcEEEEE--CCCCee-----eeEec---CCCC-CeEEEEEecCCCEEEEEeCCCcEEE
Q psy15421        185 GDVMSLSLAPDMR-TFVSGACDASAKLWD--IRDGSC-----KQTFP---GHES-DINAVTFFPNGWAFATGSDDATCRL  252 (340)
Q Consensus       185 ~~v~~~~~~~~~~-~~~sg~~dg~i~~wd--~~~~~~-----~~~~~---~h~~-~v~~v~~~~~~~~l~s~s~d~~i~i  252 (340)
                      +-.+.++|+.+.+ +.++-+.+-+|.-||  ..+|..     +..++   ..+. ..-.+++...|..+++.-.-++|..
T Consensus       158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~  237 (310)
T KOG4499|consen  158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK  237 (310)
T ss_pred             cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence            3345788887765 455777889998888  444432     22222   1111 1234556778888898888999999


Q ss_pred             EeCcCCcEEEEeecCCcccceEEEEEcC
Q psy15421        253 FDIRADQELAMYSHDNIICGITSVAFSR  280 (340)
Q Consensus       253 wd~~~~~~~~~~~~~~~~~~i~~~~~s~  280 (340)
                      .|..+++.+..+..+.  ..+++++|-.
T Consensus       238 ~dp~tGK~L~eiklPt--~qitsccFgG  263 (310)
T KOG4499|consen  238 VDPTTGKILLEIKLPT--PQITSCCFGG  263 (310)
T ss_pred             ECCCCCcEEEEEEcCC--CceEEEEecC
Confidence            9999999888775542  3589999953

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=88.18  E-value=10  Score=34.42  Aligned_cols=78  Identities=13%  Similarity=0.197  Sum_probs=53.1

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEe----cC----------------CCEEE-E
Q psy15421        185 GDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFF----PN----------------GWAFA-T  243 (340)
Q Consensus       185 ~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~----~~----------------~~~l~-s  243 (340)
                      ..+.+++.+|++++.++...=|.|.++|+.++..++-++|-...-  +.|-    +.                ..+|+ -
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            357789999999988887777999999999988777776543321  1111    00                11233 3


Q ss_pred             EeCCCcEEEEeCcCCcEEEEe
Q psy15421        244 GSDDATCRLFDIRADQELAMY  264 (340)
Q Consensus       244 ~s~d~~i~iwd~~~~~~~~~~  264 (340)
                      +-.-|.|.||.++.+.++..+
T Consensus       386 aprRg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             eccCCeEEEEecCCCCEEEEE
Confidence            445788999999888776554

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.16  E-value=17  Score=31.83  Aligned_cols=143  Identities=20%  Similarity=0.269  Sum_probs=80.9

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCc------EEEEECCC--C--eeee-----EecCCC--------CCeEEEEEecCCCEE
Q psy15421        185 GDVMSLSLAPDMRTFVSGACDAS------AKLWDIRD--G--SCKQ-----TFPGHE--------SDINAVTFFPNGWAF  241 (340)
Q Consensus       185 ~~v~~~~~~~~~~~~~sg~~dg~------i~~wd~~~--~--~~~~-----~~~~h~--------~~v~~v~~~~~~~~l  241 (340)
                      +..+.+.+.|++..+++-+.+|.      +..+++..  +  ..+.     .+....        -...+|++.++|.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            34677888866667777777777      55555443  1  0010     111111        134478887788777


Q ss_pred             EEEeCC------CcEEEEeCcCCcEEEEee-------------cCCcccceEEEEEcCCCcEEEEEeCCC-------c--
Q psy15421        242 ATGSDD------ATCRLFDIRADQELAMYS-------------HDNIICGITSVAFSRSGRLLLAGYDDF-------N--  293 (340)
Q Consensus       242 ~s~s~d------~~i~iwd~~~~~~~~~~~-------------~~~~~~~i~~~~~s~~~~~l~~g~~d~-------~--  293 (340)
                      ++.=.+      ..|+-++.. ++....+.             ......++-+++++|+|+.|.++....       .  
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            776666      778888765 33322221             011224578999999999666543321       1  


Q ss_pred             -----EEEE--eCCC-ceeee----eecc-----CCcceEEEEECCCCCEEE
Q psy15421        294 -----CNVW--DSMK-TERAG----ILAG-----HDNRVSCLGVTEDGMAVA  328 (340)
Q Consensus       294 -----i~iw--~~~~-~~~~~----~~~~-----h~~~i~~~~~s~d~~~l~  328 (340)
                           ++++  +..+ +....    .+..     ....|+.+.+-+++++|+
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv  230 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV  230 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence                 4444  4433 21222    2222     346788888999988766

>KOG4659|consensus

Probab=88.11  E-value=36  Score=35.38  Aligned_cols=63  Identities=21%  Similarity=0.214  Sum_probs=37.2

Q ss_pred             EEEEEcCCCcEEEEEeCC------------CcEEEEeCCCcee---------------eeeeccCCcceEEEEECCCCCE
Q psy15421        274 TSVAFSRSGRLLLAGYDD------------FNCNVWDSMKTER---------------AGILAGHDNRVSCLGVTEDGMA  326 (340)
Q Consensus       274 ~~~~~s~~~~~l~~g~~d------------~~i~iw~~~~~~~---------------~~~~~~h~~~i~~~~~s~d~~~  326 (340)
                      .+++++++|.+.++-++.            |+|.+.--...+|               ..--..|.+.+.+++.+|||..
T Consensus       596 r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v  675 (1899)
T KOG4659|consen  596 RDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDV  675 (1899)
T ss_pred             hceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcE
Confidence            678899999887775544            4444442111111               1112234567789999999988


Q ss_pred             EEEeeCCCcE
Q psy15421        327 VATGSWDSFL  336 (340)
Q Consensus       327 l~s~s~D~~i  336 (340)
                      +++-+.+..|
T Consensus       676 ~IAD~gN~rI  685 (1899)
T KOG4659|consen  676 IIADSGNSRI  685 (1899)
T ss_pred             EEecCCchhh
Confidence            7765444333

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=88.05  E-value=20  Score=32.54  Aligned_cols=147  Identities=14%  Similarity=0.212  Sum_probs=84.1

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCCCc---eEEEEeecCCCcceEEEEEcC--CCeEEEEeCCCeEEEEECCC--Cc-----
Q psy15421        108 SGSFVACGGLDNICSIYSLKTREGN---VRVSRELPGHTGYLSCCRFLD--DNQIVTSSGDMSCALWDIET--GQ-----  175 (340)
Q Consensus       108 ~~~~l~~~~~d~~v~i~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~v~iwd~~~--~~-----  175 (340)
                      +...+++|+..|.++||+....+..   ......+...--.+.+-.|.+  +...++.-....+.+|.+..  |.     
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            3467899999999999998554322   111222211111222223322  23455667788888888732  11     


Q ss_pred             --eEEEEecCCC--CeEEEEEcC----C-CCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeC
Q psy15421        176 --QCASFIGHTG--DVMSLSLAP----D-MRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSD  246 (340)
Q Consensus       176 --~~~~~~~~~~--~v~~~~~~~----~-~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~  246 (340)
                        .+..+..|.-  ....++.-|    . ..++..=+.||.+.+|+-+.....+.++.. --.-.+.+.|.-..|++++.
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~-llPgPl~Y~~~tDsfvt~ss  194 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF-LLPGPLCYCPRTDSFVTASS  194 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC-CCCcCeEEeecCCEEEEecC
Confidence              1222233322  233333332    2 346778899999999996654434444431 11224678887778999999


Q ss_pred             CCcEEEEeC
Q psy15421        247 DATCRLFDI  255 (340)
Q Consensus       247 d~~i~iwd~  255 (340)
                      +..+.-|..
T Consensus       195 s~~l~~Yky  203 (418)
T PF14727_consen  195 SWTLECYKY  203 (418)
T ss_pred             ceeEEEecH
Confidence            988888864

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=88.02  E-value=19  Score=32.14  Aligned_cols=111  Identities=14%  Similarity=0.090  Sum_probs=63.8

Q ss_pred             CCCeEEEEeCCCeEEEEECCCCceEEEEecC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCC-CCe
Q psy15421        153 DDNQIVTSSGDMSCALWDIETGQQCASFIGH--TGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE-SDI  229 (340)
Q Consensus       153 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~-~~v  229 (340)
                      .++.+..+..+|.+.-.|..+++.+.....-  ...+..-.+..+++ ++.++.+|.+..+|.++|+.+-...... ..+
T Consensus        67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~  145 (370)
T COG1520          67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY  145 (370)
T ss_pred             eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence            3556666677888888888877654322111  11122222223555 7778889988888988888776665444 112


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEee
Q psy15421        230 NAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS  265 (340)
Q Consensus       230 ~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  265 (340)
                      ..-.+..++. +..++.++.+.-.|..++..+..+.
T Consensus       146 ~~~~v~~~~~-v~~~s~~g~~~al~~~tG~~~W~~~  180 (370)
T COG1520         146 ASPPVVGDGT-VYVGTDDGHLYALNADTGTLKWTYE  180 (370)
T ss_pred             ecCcEEcCcE-EEEecCCCeEEEEEccCCcEEEEEe
Confidence            2222223443 3333367888888777776665543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.78  E-value=16  Score=31.10  Aligned_cols=164  Identities=13%  Similarity=0.166  Sum_probs=97.9

Q ss_pred             ecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCC-CcEEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q psy15421         51 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRS-SWVMTCAYAPSGSFVACGGLDNICSIYSLKTR  129 (340)
Q Consensus        51 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~  129 (340)
                      +.|-...|.++.|+|+.+.|++......-.+|=..+|+.+.+++... ...-.+.|.-++.|.++--.++.+.++.+...
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            55656669999999999999999999999999888899888877532 12345677778888887777888777776543


Q ss_pred             CCceEEE---Eee---cCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCc-eE--EEEecC-------CCCeEEEEE
Q psy15421        130 EGNVRVS---REL---PGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQ-QC--ASFIGH-------TGDVMSLSL  192 (340)
Q Consensus       130 ~~~~~~~---~~~---~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~-~~--~~~~~~-------~~~v~~~~~  192 (340)
                      .......   ..+   .......-.++|.+. ..|+.+-.-.=+.|+...... .+  .....+       -..++++.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            2221111   111   111223445666554 345555444445555443221 11  111111       123667778


Q ss_pred             cCCCCE-EEEEeCCCcEEEEECC
Q psy15421        193 APDMRT-FVSGACDASAKLWDIR  214 (340)
Q Consensus       193 ~~~~~~-~~sg~~dg~i~~wd~~  214 (340)
                      ++.... ++-+..++.+.-.|..
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEecC
Confidence            775544 4445556666666654

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.53  E-value=2.8  Score=23.30  Aligned_cols=31  Identities=13%  Similarity=0.109  Sum_probs=19.3

Q ss_pred             ccCCcceEEEEECCCCCEEEEee-CC--CcEEec
Q psy15421        309 AGHDNRVSCLGVTEDGMAVATGS-WD--SFLRIW  339 (340)
Q Consensus       309 ~~h~~~i~~~~~s~d~~~l~s~s-~D--~~i~iW  339 (340)
                      ......-....|||||+.|+-++ .+  |.-.||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            33445667789999998877544 44  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=87.38  E-value=17  Score=31.01  Aligned_cols=95  Identities=19%  Similarity=0.292  Sum_probs=57.8

Q ss_pred             CeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEe------CCCcEEEEECCCCeeeeEecC-----CCCCeEEE
Q psy15421        164 MSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGA------CDASAKLWDIRDGSCKQTFPG-----HESDINAV  232 (340)
Q Consensus       164 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~------~dg~i~~wd~~~~~~~~~~~~-----h~~~v~~v  232 (340)
                      ..|.+||..+.+-...-.+-.+.|.+|.|..+.++++.|.      ....+..||+.+.. ...+.+     -.++|..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEE
Confidence            3477888776554333334567899999987777777665      45677889987764 233333     23678887


Q ss_pred             EEec-CC-CEEEEEe-C--CCcEEEEeCcCCc
Q psy15421        233 TFFP-NG-WAFATGS-D--DATCRLFDIRADQ  259 (340)
Q Consensus       233 ~~~~-~~-~~l~s~s-~--d~~i~iwd~~~~~  259 (340)
                      .+.. |+ ..++.|. .  +..|..||-.+..
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~  126 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWS  126 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence            7743 33 3443433 2  3446777654433

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=87.02  E-value=22  Score=31.84  Aligned_cols=12  Identities=42%  Similarity=0.612  Sum_probs=8.8

Q ss_pred             CCCcEEEEEeCC
Q psy15421        280 RSGRLLLAGYDD  291 (340)
Q Consensus       280 ~~~~~l~~g~~d  291 (340)
                      .++++++.|+.+
T Consensus       278 ~~~~iyv~GG~~  289 (376)
T PRK14131        278 SNGVLLVAGGAN  289 (376)
T ss_pred             ECCEEEEeeccC
Confidence            467888888754

>KOG1520|consensus

Probab=86.81  E-value=18  Score=32.03  Aligned_cols=51  Identities=18%  Similarity=0.141  Sum_probs=31.4

Q ss_pred             EeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeC--CCcEEec
Q psy15421        288 GYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSW--DSFLRIW  339 (340)
Q Consensus       288 g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~--D~~i~iW  339 (340)
                      +..+|.+.-||..+.. ...+.......+.++.|||+.+++.+=.  -...|+|
T Consensus       195 g~~~GRl~~YD~~tK~-~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw  247 (376)
T KOG1520|consen  195 GDPTGRLFRYDPSTKV-TKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW  247 (376)
T ss_pred             CCCccceEEecCcccc-hhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE
Confidence            4455667777754433 3334445567789999999998776532  2334455

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.65  E-value=4.2  Score=38.58  Aligned_cols=71  Identities=21%  Similarity=0.175  Sum_probs=43.0

Q ss_pred             CCCCEEEEEeCCCcEEEEECCC----Ceeee-E-e---------cC-----------CCCCeEEEEEec----CCCEEEE
Q psy15421        194 PDMRTFVSGACDASAKLWDIRD----GSCKQ-T-F---------PG-----------HESDINAVTFFP----NGWAFAT  243 (340)
Q Consensus       194 ~~~~~~~sg~~dg~i~~wd~~~----~~~~~-~-~---------~~-----------h~~~v~~v~~~~----~~~~l~s  243 (340)
                      ++...++.+..||.+.......    +.... . +         .+           .......+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4566777788888888777654    11111 0 0         00           012345566666    6779999


Q ss_pred             EeCCCcEEEEeCcCCcEEEEe
Q psy15421        244 GSDDATCRLFDIRADQELAMY  264 (340)
Q Consensus       244 ~s~d~~i~iwd~~~~~~~~~~  264 (340)
                      .+.|+.+|+||+.+++.+...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999998885543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.25  E-value=4.6  Score=38.29  Aligned_cols=70  Identities=17%  Similarity=0.292  Sum_probs=42.9

Q ss_pred             CCCeEEEEeCCCeEEEEECCC----CceEEEE-ec---------------------CCCCeEEEEEcC----CCCEEEEE
Q psy15421        153 DDNQIVTSSGDMSCALWDIET----GQQCASF-IG---------------------HTGDVMSLSLAP----DMRTFVSG  202 (340)
Q Consensus       153 ~~~~l~~~~~d~~v~iwd~~~----~~~~~~~-~~---------------------~~~~v~~~~~~~----~~~~~~sg  202 (340)
                      ....++.+..||.+.......    +...... ..                     .......+++++    +..++++-
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            455677778888877776653    2111111 00                     012355666766    67889999


Q ss_pred             eCCCcEEEEECCCCeeeeEe
Q psy15421        203 ACDASAKLWDIRDGSCKQTF  222 (340)
Q Consensus       203 ~~dg~i~~wd~~~~~~~~~~  222 (340)
                      +.|+++|+||+.+++++.+.
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEe
Confidence            99999999999999986544

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=85.68  E-value=29  Score=31.94  Aligned_cols=55  Identities=15%  Similarity=0.228  Sum_probs=37.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--eeEec-----CCCCCeEEEEEecCC
Q psy15421        184 TGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC--KQTFP-----GHESDINAVTFFPNG  238 (340)
Q Consensus       184 ~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~--~~~~~-----~h~~~v~~v~~~~~~  238 (340)
                      -.....|+|.|++++|++--..|.|++++-..+..  +..++     .-......|+++|+-
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            34578999999998777655579999998654432  21121     124567899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=85.61  E-value=27  Score=31.56  Aligned_cols=150  Identities=9%  Similarity=0.001  Sum_probs=76.7

Q ss_pred             EEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCce-EEE
Q psy15421         58 IYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNV-RVS  136 (340)
Q Consensus        58 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~  136 (340)
                      ...+..++|+.+++.+..-..++-||.-..............+..+.+.+++..++++ ..+.+. +....+..-. ...
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f  318 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDF  318 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccce
Confidence            3444556777665544333333334422111111112223457888899999888766 445432 3322221000 001


Q ss_pred             EeecC--CCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEE---ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q psy15421        137 RELPG--HTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF---IGHTGDVMSLSLAPDMRTFVSGACDASAKLW  211 (340)
Q Consensus       137 ~~~~~--~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~w  211 (340)
                      .....  ....+..+.+.+++.++.++..|.+.... ..|+.-...   ..-......+.|.++++.+++ +.+|.|.-|
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~  396 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY  396 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence            11111  12236667777777888888888766654 334332222   123456778988877766665 466766544

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=85.58  E-value=18  Score=29.36  Aligned_cols=45  Identities=16%  Similarity=0.372  Sum_probs=31.4

Q ss_pred             EEEEEeCCCcEEEEeCcC--CcEEEEeecCCcccceEEEEEcCCCcEEEE
Q psy15421        240 AFATGSDDATCRLFDIRA--DQELAMYSHDNIICGITSVAFSRSGRLLLA  287 (340)
Q Consensus       240 ~l~s~s~d~~i~iwd~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
                      .|..+.....|.+|++..  .+.+..+..   ...|..+.++..|.+|++
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvT   76 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVT   76 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEE
Confidence            443335567799999873  334444433   345889999999999998

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=85.55  E-value=30  Score=31.89  Aligned_cols=56  Identities=11%  Similarity=0.070  Sum_probs=37.0

Q ss_pred             CCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcE--EEEee---cCCcccceEEEEEcCCC
Q psy15421        227 SDINAVTFFPNGWAFATGSDDATCRLFDIRADQE--LAMYS---HDNIICGITSVAFSRSG  282 (340)
Q Consensus       227 ~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~---~~~~~~~i~~~~~s~~~  282 (340)
                      ...+.++|.|||+.|++--..|.|++++......  +..+.   ...-..++..++|+|+-
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            4568999999998877766579999997654322  11111   11113468899999884

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=85.31  E-value=29  Score=31.55  Aligned_cols=195  Identities=16%  Similarity=0.126  Sum_probs=87.3

Q ss_pred             CCCEEEEEe-CCCeEEEEEccCCCCceEEEEeecC---C--Ccc--eEEEEEcCCC-eEEEEeC------CCeEEEEECC
Q psy15421        108 SGSFVACGG-LDNICSIYSLKTREGNVRVSRELPG---H--TGY--LSCCRFLDDN-QIVTSSG------DMSCALWDIE  172 (340)
Q Consensus       108 ~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~---~--~~~--v~~~~~~~~~-~l~~~~~------d~~v~iwd~~  172 (340)
                      +.++|+..+ ..+.|.|.|+.+.....++.+.+..   +  .+.  -....-.+++ .++++-+      -|-+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456777766 6788999999865555555554432   1  111  1111222444 5655432      2457777777


Q ss_pred             CCceEEEEecCC---CCeEEEEEcCCCCEEEEEe--------------------CCCcEEEEECCCCeeeeEecCCC--C
Q psy15421        173 TGQQCASFIGHT---GDVMSLSLAPDMRTFVSGA--------------------CDASAKLWDIRDGSCKQTFPGHE--S  227 (340)
Q Consensus       173 ~~~~~~~~~~~~---~~v~~~~~~~~~~~~~sg~--------------------~dg~i~~wd~~~~~~~~~~~~h~--~  227 (340)
                      +.+.........   ..-...-+.|..+.++|..                    .-.++.+||+.+.+.++++.--+  .
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            665555544321   1234555667666666543                    24789999999999888875222  2


Q ss_pred             CeEEEEEec--CCCE-EEEEeCCCcEEEE-eCcCCc----EEEEeecC--------Cc-------ccceEEEEEcCCCcE
Q psy15421        228 DINAVTFFP--NGWA-FATGSDDATCRLF-DIRADQ----ELAMYSHD--------NI-------ICGITSVAFSRSGRL  284 (340)
Q Consensus       228 ~v~~v~~~~--~~~~-l~s~s~d~~i~iw-d~~~~~----~~~~~~~~--------~~-------~~~i~~~~~s~~~~~  284 (340)
                      -...|.|..  +..+ |+.+.-..+|..| ....+.    .+......        ..       ..-|+.+..|.|.++
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            244566654  3333 3433334444444 222221    11122111        00       122688999999999


Q ss_pred             EEEEe-CCCcEEEEeCCCc
Q psy15421        285 LLAGY-DDFNCNVWDSMKT  302 (340)
Q Consensus       285 l~~g~-~d~~i~iw~~~~~  302 (340)
                      |.... -.|.++.||+...
T Consensus       326 LYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             EEEEETTTTEEEEEE-SST
T ss_pred             EEEEcccCCcEEEEecCCC
Confidence            98766 5899999998753

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=84.41  E-value=20  Score=28.98  Aligned_cols=172  Identities=17%  Similarity=0.117  Sum_probs=82.1

Q ss_pred             CCCeEEEEeC--CCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEE-EEeCCCeEEEEEccCCCCceEEEEeecCC
Q psy15421         66 DSRNLVSASQ--DGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVA-CGGLDNICSIYSLKTREGNVRVSRELPGH  142 (340)
Q Consensus        66 ~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~  142 (340)
                      ++.++.+.+.  ...|++||+.+++.+.+.+.....+..=-...-+.++. .-=.++...++|.++-+..-...  .++ 
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~--y~G-  131 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS--YEG-  131 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc--cCC-
Confidence            5567777765  34699999999988776654321111100001122222 12234555666655432111111  111 


Q ss_pred             CcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecC-----CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q psy15421        143 TGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGH-----TGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS  217 (340)
Q Consensus       143 ~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~  217 (340)
                        .=..+. .++..|+.+.+..++..-|.++-....++...     -...+.+.|. +|..++-.-.+..|...|.++|+
T Consensus       132 --eGWgLt-~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr  207 (262)
T COG3823         132 --EGWGLT-SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGR  207 (262)
T ss_pred             --cceeee-cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCc
Confidence              111122 23445666666677777777654433322210     0112233332 34444433344445555666665


Q ss_pred             eeeEe------------cCCCCCeEEEEEecCC-CEEEEE
Q psy15421        218 CKQTF------------PGHESDINAVTFFPNG-WAFATG  244 (340)
Q Consensus       218 ~~~~~------------~~h~~~v~~v~~~~~~-~~l~s~  244 (340)
                      .+.-+            ..|....+.+++.|++ +.+++|
T Consensus       208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            44332            1244457889999886 455555

>KOG2377|consensus

Probab=83.94  E-value=32  Score=31.39  Aligned_cols=104  Identities=11%  Similarity=0.142  Sum_probs=69.6

Q ss_pred             CCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEee--cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc-
Q psy15421        226 ESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS--HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT-  302 (340)
Q Consensus       226 ~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~-  302 (340)
                      .++|.++.|++|.+.+|.--.|.+|.+++.-..+....+.  +......|..+.|+.. .-+|.-++.| +.+|..... 
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek  143 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK  143 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh
Confidence            4589999999999999999999999999985443332222  1222224788888765 5555554444 667764332 


Q ss_pred             eeeeeeccCCcceEEEEECCCCCEEEEee
Q psy15421        303 ERAGILAGHDNRVSCLGVTEDGMAVATGS  331 (340)
Q Consensus       303 ~~~~~~~~h~~~i~~~~~s~d~~~l~s~s  331 (340)
                      ..+.....|.-.|+-..|.++.+.++-++
T Consensus       144 rslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  144 RSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             hhhhhhhhcccCccEEEEccccceEeeec
Confidence            23444557788888899999887654433

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.69  E-value=5.8  Score=22.20  Aligned_cols=31  Identities=16%  Similarity=0.238  Sum_probs=22.5

Q ss_pred             CCCCEEE-EEeCCCcEEEEECCCCeeeeEecC
Q psy15421        194 PDMRTFV-SGACDASAKLWDIRDGSCKQTFPG  224 (340)
Q Consensus       194 ~~~~~~~-sg~~dg~i~~wd~~~~~~~~~~~~  224 (340)
                      |+++.++ +...+++|.++|..+++....++.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            4566554 455689999999988877766654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.27  E-value=11  Score=29.43  Aligned_cols=31  Identities=16%  Similarity=0.308  Sum_probs=25.1

Q ss_pred             CCeEEEEEecCC------CEEEEEeCCCcEEEEeCcC
Q psy15421        227 SDINAVTFFPNG------WAFATGSDDATCRLFDIRA  257 (340)
Q Consensus       227 ~~v~~v~~~~~~------~~l~s~s~d~~i~iwd~~~  257 (340)
                      ..+..++|+|-|      ..||+...++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            368899999943      4788999999999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.83  E-value=29  Score=29.58  Aligned_cols=86  Identities=17%  Similarity=0.283  Sum_probs=57.9

Q ss_pred             EEEEECCCCceEEEEecCCCC--eEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCe-eeeEecCCCCCeEEEEEecC
Q psy15421        166 CALWDIETGQQCASFIGHTGD--VMSLSLAPDMRTFVSGACD-----ASAKLWDIRDGS-CKQTFPGHESDINAVTFFPN  237 (340)
Q Consensus       166 v~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~sg~~d-----g~i~~wd~~~~~-~~~~~~~h~~~v~~v~~~~~  237 (340)
                      ..++|....+....+...++.  .-.-.|+||+.+|+..-.|     |-|-+||.+.+- -+.++..|.-....+.+.+|
T Consensus        93 ~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~D  172 (366)
T COG3490          93 AMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMAD  172 (366)
T ss_pred             EEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecC
Confidence            456777776655544332221  1123589999998875544     789999998653 35677788777788999999


Q ss_pred             CCEEEEEeCCCcEEEE
Q psy15421        238 GWAFATGSDDATCRLF  253 (340)
Q Consensus       238 ~~~l~s~s~d~~i~iw  253 (340)
                      |+.++.+.  |-|..-
T Consensus       173 Grtlvvan--GGIeth  186 (366)
T COG3490         173 GRTLVVAN--GGIETH  186 (366)
T ss_pred             CcEEEEeC--Cceecc
Confidence            99888764  444444

>KOG2247|consensus

Probab=82.21  E-value=0.14  Score=45.87  Aligned_cols=144  Identities=15%  Similarity=0.132  Sum_probs=88.1

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC--eEEEEeCCCeEEEEECCCCceEEE
Q psy15421        102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN--QIVTSSGDMSCALWDIETGQQCAS  179 (340)
Q Consensus       102 ~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~  179 (340)
                      .-.|.|.+.-++.++.+..+..||-..   .. ... . ..++....++|..++  .++.+-..+.+.+||+.+....+-
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~ag---q~-~le-~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL  112 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAG---QV-ILE-L-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL  112 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhc---ce-ecc-c-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence            345666666688888888888887432   11 111 1 112222233443332  345567788999999976532211


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q psy15421        180 FIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRL  252 (340)
Q Consensus       180 ~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~i  252 (340)
                      -.+-...-.-+.|++....++.|--.|.+.+++.++.+..-..-.|..++.++++.+.+ +.+.++.|..+.+
T Consensus       113 E~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v  184 (615)
T KOG2247|consen  113 ESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSV  184 (615)
T ss_pred             hccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHH
Confidence            11111112226788888888888889999999987655433333388899999999876 5566666665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	340
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-171
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-171
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-171
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-171
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-170
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-103
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-07
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		3e-82
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-10
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		9e-30
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-23
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-12
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-23
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-12
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-23
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-12
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-23
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-12
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-23
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-12
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-23
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-12
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-23
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-12
2h9l_A	329	Wdr5delta23 Length = 329		1e-23
2h9l_A	329	Wdr5delta23 Length = 329		2e-12
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-23
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-12
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-23
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-12
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-23
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-12
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-23
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-12
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-23
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-12
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-23
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-12
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-23
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-12
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-23
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-12
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-23
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-12
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		7e-22
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-18
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		6e-14
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-17
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-17
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-12
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-17
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-12
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-17
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-16
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-12
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-16
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		9e-16
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		9e-16
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		9e-16
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-15
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-15
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-14
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		9e-11
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-14
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		4e-11
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-14
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-14
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-13
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-12
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-12
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-12
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-12
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-12
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		6e-12
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		6e-12
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-11
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-11
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		3e-11
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-10
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-10
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-09
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		2e-07
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		1e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		8e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-06
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-07
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-07
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-07
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-06
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-06
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-05
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-06
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		5e-06
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		7e-06
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		8e-06
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		2e-05
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		7e-05
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		2e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		2e-04
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		3e-04

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score =  598 bits (1543), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 290/340 (85%), Positives = 315/340 (92%)
Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           M+ELD LRQEAE LKN IRDARKA  D +L   T N++P+GRIQMRTRRTLRGHLAKIYA
Sbjct: 1   MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHWG+DSR LVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG++VACGGLDNI
Sbjct: 61  MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQIVTSSGD +CALWDIETGQQ  +F
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
            GHTGDVMSLSLAPD R FVSGACDASAKLWD+R+G C+QTF GHESDINA+ FFPNG A
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           FATGSDDATCRLFD+RADQEL  YSHDNIICGITSV+FS+SGRLLLAGYDDFNCNVWD++
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           K +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score =  597 bits (1540), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 289/340 (85%), Positives = 315/340 (92%)
Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           M+ELD LRQEAE LKN IRDARKA  D +L   T N++P+GRIQMRTRRTLRGHLAKIYA
Sbjct: 1   MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHWG+DSR L+SASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG++VACGGLDNI
Sbjct: 61  MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQIVTSSGD +CALWDIETGQQ  +F
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
            GHTGDVMSLSLAPD R FVSGACDASAKLWD+R+G C+QTF GHESDINA+ FFPNG A
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           FATGSDDATCRLFD+RADQEL  YSHDNIICGITSV+FS+SGRLLLAGYDDFNCNVWD++
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           K +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score =  597 bits (1539), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 289/339 (85%), Positives = 314/339 (92%)
Query: 2   NELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAM 61
           +ELD LRQEAE LKN IRDARKA  D +L   T N++P+GRIQMRTRRTLRGHLAKIYAM
Sbjct: 13  SELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAM 72
Query: 62  HWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNIC 121
           HWG+DSR LVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG++VACGGLDNIC
Sbjct: 73  HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 132
Query: 122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFI 181
           SIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQIVTSSGD +CALWDIETGQQ  +F 
Sbjct: 133 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 192
Query: 182 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 241
           GHTGDVMSLSLAPD R FVSGACDASAKLWD+R+G C+QTF GHESDINA+ FFPNG AF
Sbjct: 193 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 252
Query: 242 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 301
           ATGSDDATCRLFD+RADQEL  YSHDNIICGITSV+FS+SGRLLLAGYDDFNCNVWD++K
Sbjct: 253 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 312
Query: 302 TERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
            +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 313 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score =  597 bits (1538), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 289/339 (85%), Positives = 314/339 (92%)
Query: 2   NELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAM 61
           +ELD LRQEAE LKN IRDARKA  D +L   T N++P+GRIQMRTRRTLRGHLAKIYAM
Sbjct: 2   SELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAM 61
Query: 62  HWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNIC 121
           HWG+DSR LVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG++VACGGLDNIC
Sbjct: 62  HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 121
Query: 122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFI 181
           SIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQIVTSSGD +CALWDIETGQQ  +F 
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181
Query: 182 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 241
           GHTGDVMSLSLAPD R FVSGACDASAKLWD+R+G C+QTF GHESDINA+ FFPNG AF
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 242 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 301
           ATGSDDATCRLFD+RADQEL  YSHDNIICGITSV+FS+SGRLLLAGYDDFNCNVWD++K
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 302 TERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
            +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score =  595 bits (1534), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 288/339 (84%), Positives = 314/339 (92%)
Query: 2   NELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAM 61
           +ELD LRQEAE LKN IRDARKA  D +L   T N++P+GRIQMRTRRTLRGHLAKIYAM
Sbjct: 2   SELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAM 61
Query: 62  HWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNIC 121
           HWG+DSR L+SASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG++VACGGLDNIC
Sbjct: 62  HWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 121
Query: 122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFI 181
           SIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQIVTSSGD +CALWDIETGQQ  +F 
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181
Query: 182 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 241
           GHTGDVMSLSLAPD R FVSGACDASAKLWD+R+G C+QTF GHESDINA+ FFPNG AF
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 242 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 301
           ATGSDDATCRLFD+RADQEL  YSHDNIICGITSV+FS+SGRLLLAGYDDFNCNVWD++K
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 302 TERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
            +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score =  372 bits (955), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/341 (53%), Positives = 234/341 (68%), Gaps = 5/341 (1%)
Query: 4   LDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAMHW 63
           L SL+ EAE+LK  + + R    D  L      +E +G+  M+TRRTL+GH  K+  M W
Sbjct: 13  LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 72
Query: 64  GSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSI 123
             D R +VS+SQDGK+IVWDS+TTNK HA+ +  +WVM CAYAPSG  +ACGGLDN CS+
Sbjct: 73  CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132
Query: 124 YSLK--TREGNVRVSRELPGHTGYLSCCRFLD-DNQIVTSSGDMSCALWDIETGQQCASF 180
           Y L     E      + +  HT YLS C F + D QI+T+SGD +CALWD+E+GQ   SF
Sbjct: 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192
Query: 181 IGHTGDVMSLSLAPDM--RTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
            GH  DV+ L LAP     TFVSG CD  A +WD+R G C Q F  HESD+N+V ++P+G
Sbjct: 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG 252
Query: 239 WAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD 298
            AFA+GSDDATCRL+D+RAD+E+A+YS ++II G +SV FS SGRLL AGY+D+  NVWD
Sbjct: 253 DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWD 312
Query: 299 SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 339
            +K  R  IL GH+NRVS L V+ DG A  +GSWD  LR+W
Sbjct: 313 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 96/217 (44%), Gaps = 11/217 (5%)
Query: 133 VRVSRELPGHTGYLSCCRFLDDNQ-IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLS 191
           ++  R L GH   + C  +  D + IV+SS D    +WD  T  +  +       VM+ +
Sbjct: 54  MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA 113
Query: 192 LAPDMRTFVSGACDASAKLWDI------RDGSCKQTFPGHESDINAVTFFPNGWAFATGS 245
            AP       G  D    ++ +         + K++   H + ++A +F  +     T S
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS 173
Query: 246 DDATCRLFDIRADQEL-AMYSHD-NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTE 303
            D TC L+D+ + Q L + + H  +++C    +A S +G   ++G  D    VWD    +
Sbjct: 174 GDGTCALWDVESGQLLQSFHGHGADVLC--LDLAPSETGNTFVSGGCDKKAMVWDMRSGQ 231
Query: 304 RAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
                  H++ V+ +     G A A+GS D+  R+++
Sbjct: 232 CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score =  301 bits (771), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 155/312 (49%), Positives = 213/312 (68%), Gaps = 21/312 (6%)
Query: 49  RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
           RTL+GH  K+Y++ W  +   +VSASQDG+LIVW++ T+ K HAI L   WVM CA+AP+
Sbjct: 60  RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 109 GSFVACGGLDNICSIYSLKT---REGNVRVSRELPGHTGYLSCCRFLDDNQ--IVTSSGD 163
           G  VACGGLD+ CSI++L +   R+GN+ VSR L GH GY S C+++ D +  ++T SGD
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 164 MSCALWDIETGQQCASF-----IGHTGDVMSLSL-APDMRTFVSGACDASAKLWDIRDGS 217
            +C LWD+ TGQ+ + F      GHT DV+SLS+ + +   F+SG+CD + +LWD+R  S
Sbjct: 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239
Query: 218 -CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-----HDNIIC 271
              +T+ GHE DIN+V FFP+G  F TGSDD TCRLFD+R   +L +Y+     +DN + 
Sbjct: 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELP 299
Query: 272 GITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERA---GILAG-HDNRVSCLGVTEDGMAV 327
            +TSVAFS SGRLL AGY + +C VWD++  E     G L   H+ R+SCLG++ DG A+
Sbjct: 300 IVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL 359
Query: 328 ATGSWDSFLRIW 339
            TGSWD  L+IW
Sbjct: 360 CTGSWDKNLKIW 371

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 16/219 (7%)
Query: 137 RELPGHTGYLSCCRFL-DDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPD 195
           R L GH+G +    +  + N IV++S D    +W+  T Q+  +   H   VM  + AP+
Sbjct: 60  RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 196 MRTFVSGACDASAKLWDI-----RDGS--CKQTFPGHESDINAVTFFPNGWA-FATGSDD 247
            ++   G  D++  ++++     RDG+    +   GH+   ++  + P+      TGS D
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 248 ATCRLFDIRADQELAMYSHDNIICGITSVAFSRS-----GRLLLAGYDDFNCNVWDSMKT 302
            TC L+D+   Q ++++  +    G T+   S S       + ++G  D    +WD   T
Sbjct: 180 QTCVLWDVTTGQRISIFGSE-FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238
Query: 303 ERA-GILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
            RA     GH+  ++ +    DG    TGS D   R+++
Sbjct: 239 SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  127 bits (319), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 143/293 (48%), Gaps = 13/293 (4%)
Query: 49  RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
           +TL GH + +  + +  D + + SAS D  + +W+      +  +   SS V   A++P 
Sbjct: 92  QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD 150
Query: 109 GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSSGDMSCA 167
           G  +A    D    +++   R G  ++ + L GH+  +    F  D Q I ++S D +  
Sbjct: 151 GQTIASASDDKTVKLWN---RNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 205
Query: 168 LWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHES 227
           LW+   GQ   +  GH+  V  ++ +PD +T  S + D + KLW+ R+G   QT  GH S
Sbjct: 206 LWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSS 263
Query: 228 DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLA 287
            +N V F P+G   A+ SDD T +L++        +  H + + G   VAFS  G+ + +
Sbjct: 264 SVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG---VAFSPDGQTIAS 320
Query: 288 GYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
             DD    +W+    +    L GH + V  +  + DG  +A+ S D  +++WN
Sbjct: 321 ASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
           V +  ++P+G ++A    D +  I+     +G  +  + + GH  G        D N +V
Sbjct: 22  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 77
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
           ++S D +  +WD+ +G+   +  GH+  V   +  P     VSG+ D S ++WD++ G C
Sbjct: 78  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 137
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
            +T P H   ++AV F  +G    + S D  CR++D  + Q L  +   DN    ++ V 
Sbjct: 138 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 195
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
           FS +G+ +LA   D    +WD  K +      GH N   C+        G  + +GS D+
Sbjct: 196 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 255
Query: 335 FLRIWN 340
            + IWN
Sbjct: 256 LVYIWN 261

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
           +  GHT  V S+  +P+     S + D   K+W   DG  ++T  GH+  I+ V +  + 
Sbjct: 14  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
               + SDD T +++D+ + + L  +  H N + C      F+    L+++G  D +  +
Sbjct: 74  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 129
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           WD    +    L  H + VS +    DG  + + S+D   RIW+
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 9/245 (3%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
           V +  ++P+G ++A    D +  I+     +G  +  + + GH  G        D N +V
Sbjct: 29  VSSVKFSPNGEWLAASSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
           ++S D +  +WD+ +G+   +  GH+  V   +  P     VSG+ D S ++WD++ G C
Sbjct: 85  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAF 278
            +T P H   ++AV F  +G    + S D  CR++D  + Q L     D+    ++ V F
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKF 203
Query: 279 SRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSF 335
           S +G+ +LA   D    +WD  K +      GH N   C+        G  + +GS D+ 
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 263
Query: 336 LRIWN 340
           + IWN
Sbjct: 264 VYIWN 268

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
           +  GHT  V S+  +P+     + + D   K+W   DG  ++T  GH+  I+ V +  + 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
               + SDD T +++D+ + + L  +  H N + C      F+    L+++G  D +  +
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 136
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           WD    +    L  H + VS +    DG  + + S+D   RIW+
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
           V +  ++P+G ++A    D +  I+     +G  +  + + GH  G        D N +V
Sbjct: 48  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
           ++S D +  +WD+ +G+   +  GH+  V   +  P     VSG+ D S ++WD++ G C
Sbjct: 104 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 163
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
            +T P H   ++AV F  +G    + S D  CR++D  + Q L  +   DN    ++ V 
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 221
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
           FS +G+ +LA   D    +WD  K +      GH N   C+        G  + +GS D+
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281
Query: 335 FLRIWN 340
            + IWN
Sbjct: 282 LVYIWN 287

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
           +  GHT  V S+  +P+     S + D   K+W   DG  ++T  GH+  I+ V +  + 
Sbjct: 40  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
               + SDD T +++D+ + + L  +  H N + C      F+    L+++G  D +  +
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 155
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           WD    +    L  H + VS +    DG  + + S+D   RIW+
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
           V +  ++P+G ++A    D +  I+     +G  +  + + GH  G        D N +V
Sbjct: 26  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
           ++S D +  +WD+ +G+   +  GH+  V   +  P     VSG+ D S ++WD++ G C
Sbjct: 82  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
            +T P H   ++AV F  +G    + S D  CR++D  + Q L  +   DN    ++ V 
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 199
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
           FS +G+ +LA   D    +WD  K +      GH N   C+        G  + +GS D+
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Query: 335 FLRIWN 340
            + IWN
Sbjct: 260 LVYIWN 265

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
           +  GHT  V S+  +P+     S + D   K+W   DG  ++T  GH+  I+ V +  + 
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
               + SDD T +++D+ + + L  +  H N + C      F+    L+++G  D +  +
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 133
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           WD    +    L  H + VS +    DG  + + S+D   RIW+
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
           V +  ++P+G ++A    D +  I+     +G  +  + + GH  G        D N +V
Sbjct: 50  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 105
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
           ++S D +  +WD+ +G+   +  GH+  V   +  P     VSG+ D S ++WD++ G C
Sbjct: 106 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 165
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
            +T P H   ++AV F  +G    + S D  CR++D  + Q L  +   DN    ++ V 
Sbjct: 166 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 223
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
           FS +G+ +LA   D    +WD  K +      GH N   C+        G  + +GS D+
Sbjct: 224 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 283
Query: 335 FLRIWN 340
            + IWN
Sbjct: 284 LVYIWN 289

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
           +  GHT  V S+  +P+     S + D   K+W   DG  ++T  GH+  I+ V +  + 
Sbjct: 42  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
               + SDD T +++D+ + + L  +  H N + C      F+    L+++G  D +  +
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 157
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           WD    +    L  H + VS +    DG  + + S+D   RIW+
Sbjct: 158 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
           V +  ++P+G ++A    D +  I+     +G  +  + + GH  G        D N +V
Sbjct: 26  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
           ++S D +  +WD+ +G+   +  GH+  V   +  P     VSG+ D S ++WD++ G C
Sbjct: 82  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
            +T P H   ++AV F  +G    + S D  CR++D  + Q L  +   DN    ++ V 
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 199
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
           FS +G+ +LA   D    +WD  K +      GH N   C+        G  + +GS D+
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Query: 335 FLRIWN 340
            + IWN
Sbjct: 260 LVYIWN 265

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
           +  GHT  V S+  +P+     S + D   K+W   DG  ++T  GH+  I+ V +  + 
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
               + SDD T +++D+ + + L  +  H N + C      F+    L+++G  D +  +
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 133
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           WD    +    L  H + VS +    DG  + + S+D   RIW+
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
           V +  ++P+G ++A    D +  I+     +G  +  + + GH  G        D N +V
Sbjct: 25  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 80
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
           ++S D +  +WD+ +G+   +  GH+  V   +  P     VSG+ D S ++WD++ G C
Sbjct: 81  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 140
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
            +T P H   ++AV F  +G    + S D  CR++D  + Q L  +   DN    ++ V 
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 198
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
           FS +G+ +LA   D    +WD  K +      GH N   C+        G  + +GS D+
Sbjct: 199 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 258
Query: 335 FLRIWN 340
            + IWN
Sbjct: 259 LVYIWN 264

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
           +  GHT  V S+  +P+     S + D   K+W   DG  ++T  GH+  I+ V +  + 
Sbjct: 17  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
               + SDD T +++D+ + + L  +  H N + C      F+    L+++G  D +  +
Sbjct: 77  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 132
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           WD    +    L  H + VS +    DG  + + S+D   RIW+
Sbjct: 133 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 9/245 (3%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
           V +  ++P+G ++A    D +  I+     +G  +  + + GH  G        D N +V
Sbjct: 43  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 98
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
           ++S D +  +WD+ +G+   +  GH+  V   +  P     VSG+ D S ++WD++ G C
Sbjct: 99  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 158
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAF 278
            +T P H   ++AV F  +G    + S D  CR++D  + Q L     D+    ++ V F
Sbjct: 159 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKF 217
Query: 279 SRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSF 335
           S +G+ +LA   D    +WD  K +      GH N   C+        G  + +GS D+ 
Sbjct: 218 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 277
Query: 336 LRIWN 340
           + IWN
Sbjct: 278 VYIWN 282

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
           +  GHT  V S+  +P+     S + D   K+W   DG  ++T  GH+  I+ V +  + 
Sbjct: 35  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
               + SDD T +++D+ + + L  +  H N + C      F+    L+++G  D +  +
Sbjct: 95  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 150
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           WD    +    L  H + VS +    DG  + + S+D   RIW+
Sbjct: 151 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 9/245 (3%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
           V +  ++P+G ++A    D +  I+     +G  +  + + GH  G        D N +V
Sbjct: 27  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 82
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
           ++S D +  +WD+ +G+   +  GH+  V   +  P     VSG+ D S ++WD++ G C
Sbjct: 83  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 142
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAF 278
            +T P H   ++AV F  +G    + S D  CR++D  + Q L     D+    ++ V F
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKF 201
Query: 279 SRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSF 335
           S +G+ +LA   D    +WD  K +      GH N   C+        G  + +GS D+ 
Sbjct: 202 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 261
Query: 336 LRIWN 340
           + IWN
Sbjct: 262 VYIWN 266

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
           +  GHT  V S+  +P+     S + D   K+W   DG  ++T  GH+  I+ V +  + 
Sbjct: 19  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
               + SDD T +++D+ + + L  +  H N + C      F+    L+++G  D +  +
Sbjct: 79  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 134
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           WD    +    L  H + VS +    DG  + + S+D   RIW+
Sbjct: 135 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 9/245 (3%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
           V +  ++P+G ++A    D +  I+     +G  +  + + GH  G        D N +V
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
           ++S D +  +WD+ +G+   +  GH+  V   +  P     VSG+ D S ++WD++ G C
Sbjct: 88  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAF 278
            +T P H   ++AV F  +G    + S D  CR++D  + Q L     D+    ++ V F
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKF 206
Query: 279 SRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSF 335
           S +G+ +LA   D    +WD  K +      GH N   C+        G  + +GS D+ 
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 266
Query: 336 LRIWN 340
           + IWN
Sbjct: 267 VYIWN 271

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
           +  GHT  V S+  +P+     S + D   K+W   DG  ++T  GH+  I+ V +  + 
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
               + SDD T +++D+ + + L  +  H N + C      F+    L+++G  D +  +
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 139
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           WD    +    L  H + VS +    DG  + + S+D   RIW+
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
           V +  ++P+G ++A    D +  I+     +G  +  + + GH  G        D N +V
Sbjct: 31  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 86
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
           ++S D +  +WD+ +G+   +  GH+  V   +  P     VSG+ D S ++WD++ G C
Sbjct: 87  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 146
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
            +T P H   ++AV F  +G    + S D  CR++D  + Q L  +   DN    ++ V 
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 204
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
           FS +G+ +LA   D    +WD  K +      GH N   C+        G  + +GS D+
Sbjct: 205 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 264
Query: 335 FLRIWN 340
            + IWN
Sbjct: 265 LVYIWN 270

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
           +  GHT  V S+  +P+     S + D   K+W   DG  ++T  GH+  I+ V +  + 
Sbjct: 23  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
               + SDD T +++D+ + + L  +  H N + C      F+    L+++G  D +  +
Sbjct: 83  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 138
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           WD    +    L  H + VS +    DG  + + S+D   RIW+
Sbjct: 139 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
           V +  ++P+G ++A    D +  I+     +G  +  + + GH  G        D N +V
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
           ++S D +  +WD+ +G+   +  GH+  V   +  P     VSG+ D S ++WD++ G C
Sbjct: 88  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
            +T P H   ++AV F  +G    + S D  CR++D  + Q L  +   DN    ++ V 
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 205
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
           FS +G+ +LA   D    +WD  K +      GH N   C+        G  + +GS D+
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 335 FLRIWN 340
            + IWN
Sbjct: 266 LVYIWN 271

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
           +  GHT  V S+  +P+     S + D   K+W   DG  ++T  GH+  I+ V +  + 
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
               + SDD T +++D+ + + L  +  H N + C      F+    L+++G  D +  +
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 139
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           WD    +    L  H + VS +    DG  + + S+D   RIW+
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
           V +  ++P+G ++A    D +  I+     +G  +  + + GH  G        D N +V
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
           ++S D +  +WD+ +G+   +  GH+  V   +  P     VSG+ D S ++WD++ G C
Sbjct: 88  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
            +T P H   ++AV F  +G    + S D  CR++D  + Q L  +   DN    ++ V 
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 205
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
           FS +G+ +LA   D    +WD  K +      GH N   C+        G  + +GS D+
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 335 FLRIWN 340
            + IWN
Sbjct: 266 LVYIWN 271

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
           +  GHT  V S+  +P+     S + D   K+W   DG  ++T  GH+  I+ V +  + 
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
               + SDD T +++D+ + + L  +  H N + C      F+    L+++G  D +  +
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 139
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           WD    +    L  H + VS +    DG  + + S+D   RIW+
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
           V +  ++P+G ++A    D +  I+     +G  +  + + GH  G        D N +V
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
           ++S D +  +WD+ +G+   +  GH+  V   +  P     VSG+ D S ++WD++ G C
Sbjct: 85  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
            +T P H   ++AV F  +G    + S D  CR++D  + Q L  +   DN    ++ V 
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 202
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
           FS +G+ +LA   D    +WD  K +      GH N   C+        G  + +GS D+
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 335 FLRIWN 340
            + IWN
Sbjct: 263 LVYIWN 268

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
           +  GHT  V S+  +P+     S + D   K+W   DG  ++T  GH+  I+ V +  + 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
               + SDD T +++D+ + + L  +  H N + C      F+    L+++G  D +  +
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 136
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           WD    +    L  H + VS +    DG  + + S+D   RIW+
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
           V +  ++P+G ++A    D +  I+     +G  +  + + GH  G        D N +V
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
           ++S D +  +WD+ +G+   +  GH+  V   +  P     VSG+ D S ++WD++ G C
Sbjct: 85  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
            +T P H   ++AV F  +G    + S D  CR++D  + Q L  +   DN    ++ V 
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 202
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
           FS +G+ +LA   D    +WD  K +      GH N   C+        G  + +GS D+
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 335 FLRIWN 340
            + IWN
Sbjct: 263 LVYIWN 268

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
           +  GHT  V S+  +P+     S + D   K+W   DG  ++T  GH+  I+ V +  + 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
               + SDD T +++D+ + + L  +  H N + C      F+    L+++G  D +  +
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 136
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           WD    +    L  H + VS +    DG  + + S+D   RIW+
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
           V +  ++P+G ++A    D +  I+     +G  +  + + GH  G        D N +V
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
           ++S D +  +WD+ +G+   +  GH+  V   +  P     VSG+ D S ++WD++ G C
Sbjct: 85  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMC 144
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
            +T P H   ++AV F  +G    + S D  CR++D  + Q L  +   DN    ++ V 
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 202
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
           FS +G+ +LA   D +  +WD  K +      GH N   C+        G  + +GS D+
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 335 FLRIWN 340
            + IWN
Sbjct: 263 MVYIWN 268

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
           +  GHT  V S+  +P+     S + D   K+W   DG  ++T  GH+  I+ V +  + 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
               + SDD T +++D+ + + L  +  H N + C      F+    L+++G  D +  +
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 136
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           WD         L  H + VS +    DG  + + S+D   RIW+
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
           V +  ++P+G ++A    D +  I+     +G  +  + + GH  G        D N +V
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
           ++S D +  +WD+ +G+   +  GH+  V   +  P     VSG+ D S ++WD++ G C
Sbjct: 85  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMC 144
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
            +T P H   ++AV F  +G    + S D  CR++D  + Q L  +   DN    ++ V 
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 202
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
           FS +G+ +LA   D    +WD  K +      GH N   C+        G  + +GS D+
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 335 FLRIWN 340
            + IWN
Sbjct: 263 MVYIWN 268

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
           +  GHT  V S+  +P+     S + D   K+W   DG  ++T  GH+  I+ V +  + 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
               + SDD T +++D+ + + L  +  H N + C      F+    L+++G  D +  +
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 136
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           WD         L  H + VS +    DG  + + S+D   RIW+
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 12/213 (5%)
Query: 129 REGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVM 188
           R G ++  + L GH  ++  C     N+IV+ S D +  +W   TG+   + +GHTG V 
Sbjct: 104 RRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 163
Query: 189 SLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDA 248
           S  +  ++   +SG+ D + K+W+   G C  T  GH S +  +          +GS DA
Sbjct: 164 SSQMRDNI--IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--RVVSGSRDA 219
Query: 249 TCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGI 307
           T R++DI   Q L  +  H   +  +  V +   GR +++G  DF   VWD         
Sbjct: 220 TLRVWDIETGQCLHVLMGH---VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT 274
Query: 308 LAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           L GH NRV  L    DG+ V +GS D+ +R+W+
Sbjct: 275 LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD 305

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 113/257 (43%), Gaps = 13/257 (5%)
Query: 49  RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
           R L GH A +  +   ++    VSAS D  L +W+       +     +  V++ A++P 
Sbjct: 61  RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 109 GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF---LDDNQIVTSSGDMS 165
              +  GG DN   ++++K   G    +     HT ++SC RF   LD   IV+   D  
Sbjct: 121 NRQIVSGGRDNALRVWNVK---GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 166 CALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGH 225
             +WD+ TG+      GHT  V S++++PD     S   D  A+LWD+  G         
Sbjct: 178 VKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA- 236
Query: 226 ESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ---ELAMYSH--DNIICGITSVAFSR 280
            + IN + F PN +     ++    R+FD+       ELA        I+    S+A+S 
Sbjct: 237 GAPINQICFSPNRYWMCAATEKGI-RIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSA 295
Query: 281 SGRLLLAGYDDFNCNVW 297
            G  L +GY D    VW
Sbjct: 296 DGSTLYSGYTDNVIRVW 312

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 10/173 (5%)
Query: 137 RELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPD 195
           R L GH+ ++S     ++ N  V++S D S  LW+++ GQ    F+GHT DV+S++ +PD
Sbjct: 61  RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 196 MRTFVSGACDASAKLWDIRDGSCKQTFP--GHESDINAVTFFP--NGWAFATGSDDATCR 251
            R  VSG  D + ++W+++ G C  T     H   ++ V F P  +     +G  D   +
Sbjct: 121 NRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 252 LFDIRADQELA-MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTE 303
           ++D+   + +  +  H N    +TSV  S  G L  +   D    +WD  K E
Sbjct: 180 VWDLATGRLVTDLKGHTNY---VTSVTVSPDGSLCASSDKDGVARLWDLTKGE 229

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 40/243 (16%)
Query: 129 REGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGD-- 186
           RE +V + + L  HT  + C +F +D + + +  + +  ++ +  G   A     +    
Sbjct: 51  REIDVELHKSL-DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANK 109
Query: 187 ----------------VMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDIN 230
                           + S+  +PD +   +GA D   ++WDI +        GHE DI 
Sbjct: 110 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY 169
Query: 231 AVTFFPNGWAFATGSDDATCRLFDIRADQ-ELAMYSHDNIICGITSVAFSR-SGRLLLAG 288
           ++ +FP+G    +GS D T R++D+R  Q  L +   D    G+T+VA S   G+ + AG
Sbjct: 170 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED----GVTTVAVSPGDGKYIAAG 225
Query: 289 YDDFNCNVWDSMKTERAGILA-----------GHDNRVSCLGVTEDGMAVATGSWDSFLR 337
             D    VWDS      G L            GH + V  +  T DG +V +GS D  ++
Sbjct: 226 SLDRAVRVWDS----ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281
Query: 338 IWN 340
           +WN
Sbjct: 282 LWN 284

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 118/259 (45%), Gaps = 13/259 (5%)
Query: 48  RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
           +R LRGH   +  +   SD +  +S S DG L +WD  T          +  V++ A++ 
Sbjct: 56  QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 115
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSG-DM 164
               +  G  D    +++     G  + + +   H+ ++SC RF  +  N I+ S G D 
Sbjct: 116 DNRQIVSGSRDKTIKLWNTL---GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK 172
Query: 165 SCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG 224
              +W++   +   + IGHTG + +++++PD     SG  D  A LWD+ +G    T  G
Sbjct: 173 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Query: 225 HESDINAVTFFPNGWAF--ATGSD----DATCRLFDIRADQELAMYSHDNIICGITSVAF 278
            +  INA+ F PN +    ATG      D   ++      QE+   S        TS+A+
Sbjct: 233 GDI-INALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW 291
Query: 279 SRSGRLLLAGYDDFNCNVW 297
           S  G+ L AGY D    VW
Sbjct: 292 SADGQTLFAGYTDNLVRVW 310

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 108/257 (42%), Gaps = 28/257 (10%)
Query: 99  WVMTCAYAPS-GSFVACGGLDNICSIYSLKTREGNVRV-SRELPGHTGYLSCCRFLDDNQ 156
           WV   A  P     +     D    ++ L   E N  +  R L GH+ ++S      D Q
Sbjct: 17  WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ 76
Query: 157 IVTS-SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRD 215
              S S D +  LWD+ TG     F+GHT DV+S++ + D R  VSG+ D + KLW+   
Sbjct: 77  FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL- 135
Query: 216 GSCKQTF--PGHESDINAVTFFPN---------GWAFATGSDDATCRLFDIRADQELAMY 264
           G CK T     H   ++ V F PN         GW       D   +++++ A+ +L   
Sbjct: 136 GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW-------DKLVKVWNL-ANCKLKT- 186
Query: 265 SHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHD-NRVSCLGVTED 323
           +H      + +V  S  G L  +G  D    +WD  + +    L G D     C      
Sbjct: 187 NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRY 246
Query: 324 GMAVATGSWDSFLRIWN 340
            +  ATG     ++IW+
Sbjct: 247 WLCAATG---PSIKIWD 260

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 118/259 (45%), Gaps = 13/259 (5%)
Query: 48  RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
           +R LRGH   +  +   SD +  +S S DG L +WD  T          +  V++ A++ 
Sbjct: 79  QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 138
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSG-DM 164
               +  G  D    +++     G  + + +   H+ ++SC RF  +  N I+ S G D 
Sbjct: 139 DNRQIVSGSRDKTIKLWN---TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK 195
Query: 165 SCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG 224
              +W++   +   + IGHTG + +++++PD     SG  D  A LWD+ +G    T  G
Sbjct: 196 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
Query: 225 HESDINAVTFFPNGWAF--ATGSD----DATCRLFDIRADQELAMYSHDNIICGITSVAF 278
            +  INA+ F PN +    ATG      D   ++      QE+   S        TS+A+
Sbjct: 256 GDI-INALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW 314
Query: 279 SRSGRLLLAGYDDFNCNVW 297
           S  G+ L AGY D    VW
Sbjct: 315 SADGQTLFAGYTDNLVRVW 333

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 111/300 (37%), Gaps = 63/300 (21%)
Query: 99  WVMTCAYAPS-GSFVACGGLDNICSIYSLKTREGNVRV-SRELPGHTGYLSCCRFLDDNQ 156
           WV   A  P     +     D    ++ L   E N  +  R L GH+ ++S      D Q
Sbjct: 40  WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ 99
Query: 157 IVTS-SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRD 215
              S S D +  LWD+ TG     F+GHT DV+S++ + D R  VSG+ D + KLW+   
Sbjct: 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL- 158
Query: 216 GSCKQTFP----------------------------------------------GHESDI 229
           G CK T                                                GH   +
Sbjct: 159 GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYL 218
Query: 230 NAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY 289
           N VT  P+G   A+G  D    L+D+   + L      +I   I ++ FS + R  L   
Sbjct: 219 NTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI---INALCFSPN-RYWLCAA 274
Query: 290 DDFNCNVW--------DSMKTERAGILA-GHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
              +  +W        D +K E     +     + + L  + DG  +  G  D+ +R+W 
Sbjct: 275 TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 128/315 (40%), Gaps = 29/315 (9%)
Query: 48  RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
           +  L GH + +  + +      +VSAS+D  + VWD  T +    +   +  V   ++  
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSC 166
           SG  +A    D    ++  +  E      R + GH   +S    + + + IV++S D + 
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFE----CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 216
Query: 167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE 226
            +W+++TG    +F GH   V  +    D     S + D + ++W +    CK     H 
Sbjct: 217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 276
Query: 227 SDINAVTFFPN--------------------GWAFATGSDDATCRLFDIRADQEL-AMYS 265
             +  +++ P                     G    +GS D T +++D+     L  +  
Sbjct: 277 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 336
Query: 266 HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGM 325
           HDN + G   V F   G+ +L+  DD    VWD         L  H++ V+ L   +   
Sbjct: 337 HDNWVRG---VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 393
Query: 326 AVATGSWDSFLRIWN 340
            V TGS D  +++W 
Sbjct: 394 YVVTGSVDQTVKVWE 408

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 100/197 (50%), Gaps = 5/197 (2%)
Query: 59  YAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD 118
           + + +  DS+ L + +  GK+ ++   +  K +++  R  ++++ AY+P G ++A G +D
Sbjct: 126 WTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAID 185
Query: 119 NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQI-VTSSGDMSCALWDIETGQQC 177
            I +I+ + T     ++   L GH   +    F  D+Q+ VT+S D    ++D++     
Sbjct: 186 GIINIFDIATG----KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA 241
Query: 178 ASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPN 237
            +  GH   V++++  PD   FVS + D S K+WD+   +C  TF  H+  +  V +  N
Sbjct: 242 GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGN 301
Query: 238 GWAFATGSDDATCRLFD 254
           G    +  DD    ++D
Sbjct: 302 GSKIVSVGDDQEIHIYD 318

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 89/201 (44%), Gaps = 5/201 (2%)
Query: 112 VACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIVTSSGDMSCALWD 170
           V  G LD++  ++  K R+  + +   L GH  G +S           +SS D    LWD
Sbjct: 51  VVTGSLDDLVKVW--KWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 108
Query: 171 IETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDIN 230
           +E G+Q  S      D  +L+ +PD +   +G       ++ +  G  + +       I 
Sbjct: 109 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 168
Query: 231 AVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYD 290
           ++ + P+G   A+G+ D    +FDI   + L  ++ +     I S+ FS   +LL+   D
Sbjct: 169 SIAYSPDGKYLASGAIDGIINIFDIATGKLL--HTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 291 DFNCNVWDSMKTERAGILAGH 311
           D    ++D      AG L+GH
Sbjct: 227 DGYIKIYDVQHANLAGTLSGH 247

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 137/316 (43%), Gaps = 34/316 (10%)
Query: 48  RRTLRGHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSYTTNKVHAIPLRS-----SWVM 101
           R TL GH   + ++   +   NL+ SAS+D  LI W     ++   +P+RS       V 
Sbjct: 10  RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGH-TGYLSCCRFLDDNQIVTS 160
            C     G++      D    ++ + T E   R      GH +  +S       + I++ 
Sbjct: 70  DCTLTADGAYALSASWDKTLRLWDVATGETYQR----FVGHKSDVMSVDIDKKASMIISG 125
Query: 161 SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR------TFVSGACDASAKLWDIR 214
           S D +  +W I+ GQ  A+ +GH   V  + + P+ +      T +S   D   K W++ 
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 215 DGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS---HDNIIC 271
               +  F GH S+IN +T  P+G   A+   D    L+++ A +  AMY+    D +  
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK--AMYTLSAQDEVF- 241
Query: 272 GITSVAFSRSGRLLLA----GYDDFNCN---VWDSMKTERAGILAGHDNRVSCLGVTEDG 324
              S+AFS +   L A    G   F+ +   + D ++ E AG  A  +     L  + DG
Sbjct: 242 ---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADG 298
Query: 325 MAVATGSWDSFLRIWN 340
             +  G  D+ +R+W 
Sbjct: 299 QTLFAGYTDNVIRVWQ 314

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 136/316 (43%), Gaps = 34/316 (10%)
Query: 48  RRTLRGHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSYTTNKVHAIPLRS-----SWVM 101
           R TL GH   + ++   +   NL+ SAS+D  LI W     ++   +P+RS       V 
Sbjct: 10  RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGH-TGYLSCCRFLDDNQIVTS 160
            C     G++      D    ++ + T E   R      GH +  +S       + I++ 
Sbjct: 70  DCTLTADGAYALSASWDKTLRLWDVATGETYQR----FVGHKSDVMSVDIDKKASMIISG 125
Query: 161 SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR------TFVSGACDASAKLWDIR 214
           S D +  +W I+ GQ  A+ +GH   V  + + P+ +      T +S   D   K W++ 
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 215 DGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS---HDNIIC 271
               +  F GH S+IN +T  P+G   A+   D    L+++ A +  AMY+    D +  
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK--AMYTLSAQDEVF- 241
Query: 272 GITSVAFSRSGRLLLA----GYDDFNCN---VWDSMKTERAGILAGHDNRVSCLGVTEDG 324
              S+AFS +   L A    G   F+ +   + D ++ E AG     +     L  + DG
Sbjct: 242 ---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 325 MAVATGSWDSFLRIWN 340
             +  G  D+ +R+W 
Sbjct: 299 QTLFAGYTDNVIRVWQ 314

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 136/316 (43%), Gaps = 34/316 (10%)
Query: 48  RRTLRGHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSYTTNKVHAIPLRS-----SWVM 101
           R TL GH   + ++   +   NL+ SAS+D  LI W     ++   +P+RS       V 
Sbjct: 10  RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGH-TGYLSCCRFLDDNQIVTS 160
            C     G++      D    ++ + T E   R      GH +  +S       + I++ 
Sbjct: 70  DCTLTADGAYALSASWDKTLRLWDVATGETYQR----FVGHKSDVMSVDIDKKASMIISG 125
Query: 161 SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR------TFVSGACDASAKLWDIR 214
           S D +  +W I+ GQ  A+ +GH   V  + + P+ +      T +S   D   K W++ 
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 215 DGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS---HDNIIC 271
               +  F GH S+IN +T  P+G   A+   D    L+++ A +  AMY+    D +  
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK--AMYTLSAQDEVF- 241
Query: 272 GITSVAFSRSGRLLLA----GYDDFNCN---VWDSMKTERAGILAGHDNRVSCLGVTEDG 324
              S+AFS +   L A    G   F+ +   + D ++ E AG     +     L  + DG
Sbjct: 242 ---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 325 MAVATGSWDSFLRIWN 340
             +  G  D+ +R+W 
Sbjct: 299 QTLFAGYTDNVIRVWQ 314

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 136/316 (43%), Gaps = 34/316 (10%)
Query: 48  RRTLRGHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSYTTNKVHAIPLRS-----SWVM 101
           R TL GH   + ++   +   NL+ SAS+D  LI W     ++   +P+RS       V 
Sbjct: 10  RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGH-TGYLSCCRFLDDNQIVTS 160
            C     G++      D    ++ + T E   R      GH +  +S       + I++ 
Sbjct: 70  DCTLTADGAYALSASWDKTLRLWDVATGETYQR----FVGHKSDVMSVDIDKKASMIISG 125
Query: 161 SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR------TFVSGACDASAKLWDIR 214
           S D +  +W I+ GQ  A+ +GH   V  + + P+ +      T +S   D   K W++ 
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 215 DGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS---HDNIIC 271
               +  F GH S+IN +T  P+G   A+   D    L+++ A +  AMY+    D +  
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK--AMYTLSAQDEVF- 241
Query: 272 GITSVAFSRSGRLLLA----GYDDFNCN---VWDSMKTERAGILAGHDNRVSCLGVTEDG 324
              S+AFS +   L A    G   F+ +   + D ++ E AG     +     L  + DG
Sbjct: 242 ---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 325 MAVATGSWDSFLRIWN 340
             +  G  D+ +R+W 
Sbjct: 299 QTLFAGYTDNVIRVWQ 314

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 136/316 (43%), Gaps = 34/316 (10%)
Query: 48  RRTLRGHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSYTTNKVHAIPLRS-----SWVM 101
           R TL GH   + ++   +   NL+ SAS+D  LI W     ++   +P+RS       V 
Sbjct: 4   RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 63
Query: 102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGH-TGYLSCCRFLDDNQIVTS 160
            C     G++      D    ++ + T E   R      GH +  +S       + I++ 
Sbjct: 64  DCTLTADGAYALSASWDKTLRLWDVATGETYQR----FVGHKSDVMSVDIDKKASMIISG 119
Query: 161 SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR------TFVSGACDASAKLWDIR 214
           S D +  +W I+ GQ  A+ +GH   V  + + P+ +      T +S   D   K W++ 
Sbjct: 120 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 215 DGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS---HDNIIC 271
               +  F GH S+IN +T  P+G   A+   D    L+++ A +  AMY+    D +  
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK--AMYTLSAQDEVF- 235
Query: 272 GITSVAFSRSGRLLLA----GYDDFNCN---VWDSMKTERAGILAGHDNRVSCLGVTEDG 324
              S+AFS +   L A    G   F+ +   + D ++ E AG     +     L  + DG
Sbjct: 236 ---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 292
Query: 325 MAVATGSWDSFLRIWN 340
             +  G  D+ +R+W 
Sbjct: 293 QTLFAGYTDNVIRVWQ 308

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 134/316 (42%), Gaps = 34/316 (10%)
Query: 48  RRTLRGHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSYTTNKVHAIPLRS-----SWVM 101
           R TL GH   + ++   +   NL+ SAS+D  LI W     ++   +P+RS       V 
Sbjct: 10  RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ----I 157
            C     G++      D    ++ + T E   R         G+ S    +D ++    I
Sbjct: 70  DCTLTADGAYALSASWDKTLRLWDVATGETYQRF-------VGHKSDVXSVDIDKKASXI 122
Query: 158 VTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR------TFVSGACDASAKLW 211
           ++ S D +  +W I+ GQ  A+ +GH   V  + + P+ +      T +S   D   K W
Sbjct: 123 ISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181
Query: 212 DIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIIC 271
           ++     +  F GH S+IN +T  P+G   A+   D    L+++ A +     S  + + 
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVF 241
Query: 272 GITSVAFSRSGRLLLA----GYDDFNCN---VWDSMKTERAGILAGHDNRVSCLGVTEDG 324
              S+AFS +   L A    G   F+ +   + D ++ E AG     +     L  + DG
Sbjct: 242 ---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 325 MAVATGSWDSFLRIWN 340
             +  G  D+ +R+W 
Sbjct: 299 QTLFAGYTDNVIRVWQ 314

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 114/249 (45%), Gaps = 14/249 (5%)
Query: 45  MRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCA 104
           +  +R L GH   +  + +  D R +++ S D  + VWD  T   ++ +      V+   
Sbjct: 163 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR 220
Query: 105 YAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDM 164
           +  +G  V C   D   +++ + +   ++ + R L GH   ++   F DD  IV++SGD 
Sbjct: 221 FN-NGMMVTCSK-DRSIAVWDMAS-PTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDR 276
Query: 165 SCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG 224
           +  +W+  T +   +  GH   +  L      R  VSG+ D + +LWDI  G+C +   G
Sbjct: 277 TIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEG 334
Query: 225 HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRL 284
           HE  +  + F  +     +G+ D   +++D+ A   L   +    +C  T V    SGR+
Sbjct: 335 HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVA--ALDPRAPAGTLCLRTLV--EHSGRV 388
Query: 285 LLAGYDDFN 293
               +D+F 
Sbjct: 389 FRLQFDEFQ 397

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 15/196 (7%)
Query: 149 CRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASA 208
           C   DD +IV+   D +  +WD  T +      GHTG V+ L    D R  ++G+ D++ 
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTV 195
Query: 209 KLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDN 268
           ++WD+  G    T   H   +  + F  N     T S D +  ++D+ +  ++ +     
Sbjct: 196 RVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLR---R 250
Query: 269 IICG----ITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDG 324
           ++ G    +  V F    + +++   D    VW++   E    L GH   ++CL   +  
Sbjct: 251 VLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD-- 306
Query: 325 MAVATGSWDSFLRIWN 340
             V +GS D+ +R+W+
Sbjct: 307 RLVVSGSSDNTIRLWD 322

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 138/325 (42%), Gaps = 43/325 (13%)
Query: 48  RRTLRGHLAKIYAMHWGSDSRNL-VSASQDGKLIVWDSYTTNKVHAIPLR-----SSWVM 101
           + T+R H   + A+    D+ ++ VSAS+D  +I+W     +K + +  R     S +V 
Sbjct: 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVE 434
Query: 102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTG-YLSCCRFLDDNQIVTS 160
               +  G F   G  D    ++ L         +R   GHT   LS    LD+ QIV++
Sbjct: 435 DVVLSSDGQFALSGSWDGELRLWDLAAGVS----TRRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 161 SGDMSCALWDIETGQQCASFI-----GHTGDVMSLSLAPD--MRTFVSGACDASAKLWDI 213
           S D +  LW+  T  +C   I     GH   V  +  +P+    T VS + D + K+W++
Sbjct: 491 SRDRTIKLWN--TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Query: 214 RDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGI 273
            +   + T  GH   ++ V   P+G   A+G  D    L+D+   ++L     +++   I
Sbjct: 549 SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV---I 605
Query: 274 TSVAFSRSGRLLLAGYDDFNCNVWD-----------------SMKTERAGILAGHDNRVS 316
            ++ FS + R  L    +    +WD                 + K + +G  A     + 
Sbjct: 606 HALCFSPN-RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY 664
Query: 317 C--LGVTEDGMAVATGSWDSFLRIW 339
           C  L  + DG  + +G  D  +R+W
Sbjct: 665 CTSLNWSADGSTLFSGYTDGVIRVW 689

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 82/209 (39%), Gaps = 48/209 (22%)
Query: 137 RELPGHTGYLSCCRFLDDNQIVTS-SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPD 195
           R L GH+ ++       D Q   S S D    LWD+  G     F+GHT DV+S++ + D
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 196 MRTFVSGACDASAKLWDIRDGSCKQTF----PGHESDINAVTFFPNGWAFATGSDDATCR 251
            R  VS + D + KLW+   G CK T      GH   ++ V F PN              
Sbjct: 484 NRQIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPN-------------- 528
Query: 252 LFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGH 311
                            +   I S ++ ++              VW+    +    LAGH
Sbjct: 529 ----------------TLQPTIVSASWDKT------------VKVWNLSNCKLRSTLAGH 560
Query: 312 DNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
              VS + V+ DG   A+G  D  + +W+
Sbjct: 561 TGYVSTVAVSPDGSLCASGGKDGVVLLWD 589

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 118/313 (37%), Gaps = 20/313 (6%)
Query: 43  IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMT 102
           I+  +R  +R H   +Y   +  D + + S   D  L V+ + T  K+  I      V+ 
Sbjct: 610 IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLC 669
Query: 103 CAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ---IVT 159
           CA++   S++A    D    I+   T     ++      H+  ++CC F + +    + T
Sbjct: 670 CAFSSDDSYIATCSADKKVKIWDSATG----KLVHTYDEHSEQVNCCHFTNKSNHLLLAT 725
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS-- 217
            S D    LWD+   +   +  GHT  V     +PD     S + D + +LWD+R  +  
Sbjct: 726 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 785
Query: 218 ----CKQTFPGHESDINAVTFFPNGWAFATGSDDATCR------LFDIRADQELAMYSHD 267
                K+ F   E     V       +++   D           LFDI     LA   H 
Sbjct: 786 KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI-HT 844
Query: 268 NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAV 327
                I    FS    L +     +   +W+     +     GH + V  +  + DG + 
Sbjct: 845 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSF 904
Query: 328 ATGSWDSFLRIWN 340
            T S D  +R+W 
Sbjct: 905 LTASDDQTIRVWE 917

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 118/313 (37%), Gaps = 20/313 (6%)
Query: 43  IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMT 102
           I+  +R  +R H   +Y   +  D + + S   D  L V+ + T  K+  I      V+ 
Sbjct: 603 IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLC 662
Query: 103 CAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ---IVT 159
           CA++   S++A    D    I+   T     ++      H+  ++CC F + +    + T
Sbjct: 663 CAFSSDDSYIATCSADKKVKIWDSATG----KLVHTYDEHSEQVNCCHFTNKSNHLLLAT 718
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS-- 217
            S D    LWD+   +   +  GHT  V     +PD     S + D + +LWD+R  +  
Sbjct: 719 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 778
Query: 218 ----CKQTFPGHESDINAVTFFPNGWAFATGSDDATCR------LFDIRADQELAMYSHD 267
                K+ F   E     V       +++   D           LFDI     LA   H 
Sbjct: 779 KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI-HT 837
Query: 268 NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAV 327
                I    FS    L +     +   +W+     +     GH + V  +  + DG + 
Sbjct: 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSF 897
Query: 328 ATGSWDSFLRIWN 340
            T S D  +R+W 
Sbjct: 898 LTASDDQTIRVWE 910

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 128/288 (44%), Gaps = 26/288 (9%)
Query: 67  SRNLVSASQDGKLIVWDSYTTNKVHAIPLRS--SWVMTCAYAPSGSFVACGGLDNICSIY 124
           S N+++ + D  + +W + + + +  + +     ++ + A+   G+++A G         
Sbjct: 115 SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVG-------TS 167
Query: 125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALW--DIETGQQ-CASFI 181
           S + +  +V+  + L   T + +    L  N  + SSG  S  +   D+   +   A+  
Sbjct: 168 SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 227
Query: 182 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS----CKQTFPGHESDINAVTFFP- 236
           GH+ +V  L  APD R   SG  D    +W    G       QTF  H+  + AV + P 
Sbjct: 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287
Query: 237 --NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNC 294
             N  A   G+ D   R++++ +   L+     + +C   S+ +S   + L++G+  F  
Sbjct: 288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC---SILWSPHYKELISGHG-FAQ 343
Query: 295 N---VWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 339
           N   +W      +   L GH +RV  L ++ DG  VA+ + D  LR+W
Sbjct: 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 128/288 (44%), Gaps = 26/288 (9%)
Query: 67  SRNLVSASQDGKLIVWDSYTTNKVHAIPLRS--SWVMTCAYAPSGSFVACGGLDNICSIY 124
           S N+++ + D  + +W + + + +  + +     ++ + A+   G+++A G         
Sbjct: 126 SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVG-------TS 178
Query: 125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALW--DIETGQQ-CASFI 181
           S + +  +V+  + L   T + +    L  N  + SSG  S  +   D+   +   A+  
Sbjct: 179 SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 238
Query: 182 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS----CKQTFPGHESDINAVTFFP- 236
           GH+ +V  L  APD R   SG  D    +W    G       QTF  H+  + AV + P 
Sbjct: 239 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 298
Query: 237 --NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNC 294
             N  A   G+ D   R++++ +   L+     + +C   S+ +S   + L++G+  F  
Sbjct: 299 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC---SILWSPHYKELISGHG-FAQ 354
Query: 295 N---VWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 339
           N   +W      +   L GH +RV  L ++ DG  VA+ + D  LR+W
Sbjct: 355 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 128/288 (44%), Gaps = 26/288 (9%)
Query: 67  SRNLVSASQDGKLIVWDSYTTNKVHAIPLRS--SWVMTCAYAPSGSFVACGGLDNICSIY 124
           S N+++ + D  + +W + + + +  + +     ++ + A+   G+++A G         
Sbjct: 35  SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVG-------TS 87
Query: 125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALW--DIETGQQ-CASFI 181
           S + +  +V+  + L   T + +    L  N  + SSG  S  +   D+   +   A+  
Sbjct: 88  SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 147
Query: 182 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS----CKQTFPGHESDINAVTFFP- 236
           GH+ +V  L  APD R   SG  D    +W    G       QTF  H+  + AV + P 
Sbjct: 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 207
Query: 237 --NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNC 294
             N  A   G+ D   R++++ +   L+     + +C   S+ +S   + L++G+  F  
Sbjct: 208 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC---SILWSPHYKELISGHG-FAQ 263
Query: 295 N---VWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 339
           N   +W      +   L GH +RV  L ++ DG  VA+ + D  LR+W
Sbjct: 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 24/224 (10%)
Query: 139 LPGH-TGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR 197
           L GH T  ++C +F +DN ++T + D    ++D    +      GH G V +L  A    
Sbjct: 117 LRGHMTSVITCLQF-EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-G 174
Query: 198 TFVSGACDASAKLWDIRDGSCKQTFPGHESDINA--VTFFPNGWAFATGSDDATCRLFDI 255
             VSG+ D + ++WDI+ G C   F GH S +    +  + N     TGS D T  ++ +
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 256 RADQELAMY--SHDNIIC----------------GITSV-AFSRSGRLLLAGYDDFNCNV 296
             +  +  +   HD  +                  + SV   S  G ++++G  D    V
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           WD  + +   IL+GH +R+       +     + S D+ +RIW+
Sbjct: 295 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 338

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 96/224 (42%), Gaps = 24/224 (10%)
Query: 139 LPGH-TGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR 197
           L GH T  ++C +F +DN ++T + D    ++D    +      GH G V +L  A    
Sbjct: 117 LRGHXTSVITCLQF-EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-G 174
Query: 198 TFVSGACDASAKLWDIRDGSCKQTFPGHESDINA--VTFFPNGWAFATGSDDATCRLFDI 255
             VSG+ D + ++WDI+ G C   F GH S +    +  + N     TGS D T  ++ +
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 256 RADQELAMY--SHDNIICGITSV-----------------AFSRSGRLLLAGYDDFNCNV 296
             +  +  +   HD  +   T                     S  G ++++G  D    V
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           WD  + +   IL+GH +R+       +     + S D+ +RIW+
Sbjct: 295 WDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWD 338

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 99/245 (40%), Gaps = 18/245 (7%)
Query: 99  WVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIV 158
           WV+T  Y  SG  V     +    + S++  E  VR  + +               N I+
Sbjct: 27  WVLTTLY--SGR-VELWNYETQVEVRSIQVTETPVRAGKFI------------ARKNWII 71
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG-S 217
             S D    +++  TG++   F  H   + S+++ P     +SG+ D + KLW+  +  +
Sbjct: 72  VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 218 CKQTFPGHESDINAVTFFPNGWA-FATGSDDATCRLFDI-RADQELAMYSHDNIICGITS 275
            +QTF GHE  +  V F P   + FA+G  D T +++ + ++     + +          
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
                    ++   DD    +WD         L GH + VS          + +GS D  
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 336 LRIWN 340
           L+IWN
Sbjct: 252 LKIWN 256

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 99/245 (40%), Gaps = 18/245 (7%)
Query: 99  WVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIV 158
           WV+T  Y  SG  V     +    + S++  E  VR  + +               N I+
Sbjct: 27  WVLTTLY--SGR-VELWNYETQVEVRSIQVTETPVRAGKFI------------ARKNWII 71
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG-S 217
             S D    +++  TG++   F  H   + S+++ P     +SG+ D + KLW+  +  +
Sbjct: 72  VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 218 CKQTFPGHESDINAVTFFPNGWA-FATGSDDATCRLFDI-RADQELAMYSHDNIICGITS 275
            +QTF GHE  +  V F P   + FA+G  D T +++ + ++     + +          
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
                    ++   DD    +WD         L GH + VS          + +GS D  
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 336 LRIWN 340
           L+IWN
Sbjct: 252 LKIWN 256

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 99/245 (40%), Gaps = 18/245 (7%)
Query: 99  WVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIV 158
           WV+T  Y  SG  V     +    + S++  E  VR  + +               N I+
Sbjct: 27  WVLTTLY--SGR-VELWNYETQVEVRSIQVTETPVRAGKFIARK------------NWII 71
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG-S 217
             S D    +++  TG++   F  H   + S+++ P     +SG+ D + KLW+  +  +
Sbjct: 72  VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 218 CKQTFPGHESDINAVTFFPNGWA-FATGSDDATCRLFDI-RADQELAMYSHDNIICGITS 275
            +QTF GHE  +  V F P   + FA+G  D T +++ + ++     + +          
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
                    ++   DD    +WD         L GH + VS          + +GS D  
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 336 LRIWN 340
           L+IWN
Sbjct: 252 LKIWN 256

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 99/245 (40%), Gaps = 18/245 (7%)
Query: 99  WVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIV 158
           WV+T  Y  SG  V     +    + S++  E  VR  + +               N I+
Sbjct: 27  WVLTTLY--SGR-VEIWNYETQVEVRSIQVTETPVRAGKFIARK------------NWII 71
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG-S 217
             S D    +++  TG++   F  H   + S+++ P     +SG+ D + KLW+  +  +
Sbjct: 72  VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 218 CKQTFPGHESDINAVTFFPNGWA-FATGSDDATCRLFDI-RADQELAMYSHDNIICGITS 275
            +QTF GHE  +  V F P   + FA+G  D T +++ + ++     + +          
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
                    ++   DD    +WD         L GH + VS          + +GS D  
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 336 LRIWN 340
           L+IWN
Sbjct: 252 LKIWN 256

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 130/286 (45%), Gaps = 29/286 (10%)
Query: 69  NLVSASQDGKLIVWDSYTTNKVHAIPL--RSSWVMTCAYAPSGSFVACGGLDNICSIYSL 126
           N+V+ + +  + VW++  +  V A+     S++V +  ++  GSF++ G  + +  IY +
Sbjct: 105 NVVAVALERNVYVWNA-DSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163
Query: 127 KTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIET---GQQCASFIGH 183
           +++       R + GH   + C  +   N+ V SSG  S A+   +      Q  +  GH
Sbjct: 164 ESQTK----LRTMAGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH 216
Query: 184 TGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFP---NGWA 240
           + +V  L+   D     SG  D   ++WD R    K T   H + + AV + P   N  A
Sbjct: 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLA 276
Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICG--ITSVAFSRSGRLLLA--GYDDFNCNV 296
              G+ D     ++      +     + +  G  +TS+ +S   + +++  G+ D N ++
Sbjct: 277 TGGGTMDKQIHFWNAATGARV-----NTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331
Query: 297 W---DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 339
           W    S  T++  I A HD RV    ++ DG  ++T + D  L+ W
Sbjct: 332 WSYSSSGLTKQVDIPA-HDTRVLYSALSPDGRILSTAASDENLKFW 376

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 31/239 (12%)
Query: 43  IQMRTRRTLRGH------LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYT--TNKVHAIP 94
           IQ+  R  L GH      +   ++     DS  L+S S+D  +++W  Y    N    IP
Sbjct: 9   IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIP 68
Query: 95  LRS-----SWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCC 149
            ++      +V   A +    F      D    ++ L+T        +   GH   +   
Sbjct: 69  HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG----TTYKRFVGHQSEVYSV 124
Query: 150 RFLDDN-QIVTSSGDMSCALWDI--ETGQQCASFIGHTGDVMSLSLAPDMRT-------- 198
            F  DN QI+++  +    LW+I  E     A    H+  V  +  +P M++        
Sbjct: 125 AFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFA 184
Query: 199 --FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDI 255
             F S   D   K+W+  +   + TF  HES++N ++  PNG   ATG  D    ++DI
Sbjct: 185 PYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 94/235 (40%), Gaps = 47/235 (20%)
Query: 115 GGLDNICSIYSLKTREGNVRVS---RELPGHTGYLSCCRFLDDNQI-VTSSGDMSCALWD 170
           G  D    I+ L   E N       + L GH  ++S      +N   ++SS D +  LWD
Sbjct: 45  GSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWD 104
Query: 171 IETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDIN 230
           + TG     F+GH  +V S++ +PD R  +S   +   KLW+I  G CK  F   E +  
Sbjct: 105 LRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECK--FSSAEKE-- 159
Query: 231 AVTFFPNGWAFATGSDDATCRLF-----DIRADQELAMYSHDNIICGITSVAFSRSGRLL 285
                         SD  +C  +          Q  A Y          SV +   GRL 
Sbjct: 160 ------------NHSDWVSCVRYSPIMKSANKVQPFAPY--------FASVGW--DGRL- 196
Query: 286 LAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
                     VW++    R    A H++ V+ L ++ +G  +ATG  D  L IW+
Sbjct: 197 ---------KVWNTNFQIRYTFKA-HESNVNHLSISPNGKYIATGGKDKKLLIWD 241

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 116/283 (40%), Gaps = 23/283 (8%)
Query: 31  VTATGNMEP--------IGRIQMRTRRTLR--GHLAKIYAMHWGSDSRNLVSASQDGKLI 80
           VTA G M+P        IG    R  R +    H   + A+   + +R++ +  + G + 
Sbjct: 17  VTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGK-GCVK 75
Query: 81  VWD-SYTTNKVHAIPL----RSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV 135
           VWD S+  NK     L    R +++ +C   P G  +  GG  +  SI+ L       R+
Sbjct: 76  VWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP--TPRI 133
Query: 136 SRELPGHTGYLSCCRFLDDNQIVTS-SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAP 194
             EL              D+++  S   D + A+WD+        F GHT     + ++ 
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193
Query: 195 DMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFD 254
           D     +G  D + + WD+R+G   Q      S I ++ + P G   A G + +   +  
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLH 252
Query: 255 IRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW 297
           +    +  ++ H++    + S+ F+  G+  ++   D   N W
Sbjct: 253 VNKPDKYQLHLHESC---VLSLKFAYCGKWFVSTGKDNLLNAW 292

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 7/198 (3%)
Query: 145 YLSCCRFLDDNQIVTSSGDMS-CALWDI--ETGQQCASFIGHTGDVMSLSLAPDMRTFVS 201
           Y+  C+ L D   +   G+ S  ++WD+   T +  A          +L+++PD +   S
Sbjct: 99  YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158
Query: 202 GACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL 261
              D +  +WD+ + +  + F GH    + +    +G    TG  D T R +D+R  ++L
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
Query: 262 AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVT 321
             +   +    I S+ +  +G  L  G +  N  V    K ++   L  H++ V  L   
Sbjct: 219 QQH---DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFA 274
Query: 322 EDGMAVATGSWDSFLRIW 339
             G    +   D+ L  W
Sbjct: 275 YCGKWFVSTGKDNLLNAW 292

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 21/219 (9%)
Query: 138 ELPGHTGYLSCCRFLDDNQIVTS-SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDM 196
           +L GH   L+  ++  +  ++ S S D S ++W    G++  +  GHTG + S+ +    
Sbjct: 27  KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 197 RTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDA-----TCR 251
           +  V+G+ D S KLWD+ +G C  T+      +  V F P G  F    D+      +  
Sbjct: 87  KYCVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCGNYFLAILDNVMKNPGSIN 145
Query: 252 LFDIRAD---QELAMYSHDNI--------ICGITSVAFSRSGRLLLAGYDDFNCNVWD-S 299
           +++I  D    EL   S + I        +   T   +S  G+ ++AG+ D   + +D S
Sbjct: 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS 205
Query: 300 MKTERAGILAGHDNRVSCLGVTEDGMAVATGSWD--SFL 336
              E    +  H+  +S +  + D     T S D  SFL
Sbjct: 206 NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFL 244

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 101/245 (41%), Gaps = 32/245 (13%)
Query: 89  KVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK---------TREGNVRVSREL 139
           +V A P    W +  A+ P+G+ +A  G D    I+  +           EG+ R  R++
Sbjct: 10  RVPAHPDSRCWFL--AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKV 67
Query: 140 PGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQ-QCASFI-GHTGDVMSLSLAPDMR 197
                +  C      N + ++S D +  +W       +C + + GH  +V S++ AP   
Sbjct: 68  ----AWSPC-----GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 198 TFVSGACDASAKLWDIRDG---SCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFD 254
              + + D S  +W++ +     C      H  D+  V + P+    A+ S D T +L+ 
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178
Query: 255 IRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNR 314
              D  +   + +     + S+AF  SG+ L +  DD    +W          L G++  
Sbjct: 179 EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY-------LPGNEQG 231
Query: 315 VSCLG 319
           V+C G
Sbjct: 232 VACSG 236

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 93/223 (41%), Gaps = 34/223 (15%)
Query: 139 LPGHTGYLSCCRFLDDNQ----IVTSSGDMSCALWDIETGQQ-CASFI--GHTGDVMSLS 191
           +P H    S C FL  N     + +  GD    +W  E     C S +  GH   V  ++
Sbjct: 11  VPAHPD--SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVA 68
Query: 192 LAPDMRTFVSGACDASAKLW--DIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDAT 249
            +P      S + DA+  +W  +  D  C  T  GHE+++ +V + P+G   AT S D +
Sbjct: 69  WSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS 128
Query: 250 CRLFDIRADQEL----AMYSHDNIICGITSVAFSRSGRLLL-AGYDDFNCNVWDSMKTER 304
             ++++  + E      + SH      +  V +  S  LL  A YDD       ++K  R
Sbjct: 129 VWVWEVDEEDEYECVSVLNSHTQ---DVKHVVWHPSQELLASASYDD-------TVKLYR 178
Query: 305 A--------GILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 339
                      L GH++ V  L     G  +A+ S D  +RIW
Sbjct: 179 EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 101/246 (41%), Gaps = 31/246 (12%)
Query: 38  EPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSYTTNKVHAIPLR 96
           EP G  Q   R  LRGH  + Y + W  +    L+SAS D  + +WD   T K H + + 
Sbjct: 166 EPSGECQPDLR--LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV-ID 222
Query: 97  SSWVMTCAYAPSGSFV-------ACGGLDNICSIYSLKTREGNV-RVSRELPGHTGYLSC 148
           +  + T   A               G + +   +    TR  N  + S  +  HT  ++C
Sbjct: 223 AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 282
Query: 149 CRFLDDNQIV--TSSGDMSCALWDIETGQ-QCASFIGHTGDVMSLSLAPDMRTFV-SGAC 204
             F   ++ +  T S D + ALWD+   + +  SF  H  ++  +  +P   T + S   
Sbjct: 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 342
Query: 205 DASAKLWDI------------RDGSCKQTF--PGHESDINAVTFFPN-GWAFATGSDDAT 249
           D    +WD+             DG  +  F   GH + I+  ++ PN  W   + S+D  
Sbjct: 343 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 402
Query: 250 CRLFDI 255
            +++ +
Sbjct: 403 MQVWQM 408

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 157 IVTSSGDMSCALWDIETGQQCAS-------FIGHTGDVMSLSLAPDMRT-FVSGACDASA 208
           ++++S D +  LWDI    +          F GHT  V  ++      + F S A D   
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 209 KLWDIRDGSCKQ---TFPGHESDINAVTFFP-NGWAFATGSDDATCRLFDIRADQELAMY 264
            +WD R+ +  +   T   H +++N ++F P + +  ATGS D T  L+D+R + +L ++
Sbjct: 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR-NLKLKLH 315
Query: 265 SHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMK 301
           S ++    I  V +S     +LA    D   +VWD  K
Sbjct: 316 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 101/246 (41%), Gaps = 31/246 (12%)
Query: 38  EPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSYTTNKVHAIPLR 96
           EP G  Q   R  LRGH  + Y + W  +    L+SAS D  + +WD   T K H + + 
Sbjct: 168 EPSGECQPDLR--LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV-ID 224
Query: 97  SSWVMTCAYAPSGSFV-------ACGGLDNICSIYSLKTREGNV-RVSRELPGHTGYLSC 148
           +  + T   A               G + +   +    TR  N  + S  +  HT  ++C
Sbjct: 225 AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 284
Query: 149 CRFLDDNQIV--TSSGDMSCALWDIETGQ-QCASFIGHTGDVMSLSLAPDMRTFV-SGAC 204
             F   ++ +  T S D + ALWD+   + +  SF  H  ++  +  +P   T + S   
Sbjct: 285 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 344
Query: 205 DASAKLWDI------------RDGSCKQTF--PGHESDINAVTFFPN-GWAFATGSDDAT 249
           D    +WD+             DG  +  F   GH + I+  ++ PN  W   + S+D  
Sbjct: 345 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 404
Query: 250 CRLFDI 255
            +++ +
Sbjct: 405 MQVWQM 410

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 157 IVTSSGDMSCALWDIETGQQCAS-------FIGHTGDVMSLSLAPDMRT-FVSGACDASA 208
           ++++S D +  LWDI    +          F GHT  V  ++      + F S A D   
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 209 KLWDIRDGSCKQ---TFPGHESDINAVTFFP-NGWAFATGSDDATCRLFDIRADQELAMY 264
            +WD R+ +  +   T   H +++N ++F P + +  ATGS D T  L+D+R + +L ++
Sbjct: 259 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR-NLKLKLH 317
Query: 265 SHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMK 301
           S ++    I  V +S     +LA    D   +VWD  K
Sbjct: 318 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 101/246 (41%), Gaps = 31/246 (12%)
Query: 38  EPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSYTTNKVHAIPLR 96
           EP G  Q   R  LRGH  + Y + W  +    L+SAS D  + +WD   T K H + + 
Sbjct: 170 EPSGECQPDLR--LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV-ID 226
Query: 97  SSWVMTCAYAPSGSFV-------ACGGLDNICSIYSLKTREGNV-RVSRELPGHTGYLSC 148
           +  + T   A               G + +   +    TR  N  + S  +  HT  ++C
Sbjct: 227 AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 286
Query: 149 CRFLDDNQIV--TSSGDMSCALWDIETGQ-QCASFIGHTGDVMSLSLAPDMRTFV-SGAC 204
             F   ++ +  T S D + ALWD+   + +  SF  H  ++  +  +P   T + S   
Sbjct: 287 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 346
Query: 205 DASAKLWDI------------RDGSCKQTF--PGHESDINAVTFFPN-GWAFATGSDDAT 249
           D    +WD+             DG  +  F   GH + I+  ++ PN  W   + S+D  
Sbjct: 347 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 406
Query: 250 CRLFDI 255
            +++ +
Sbjct: 407 MQVWQM 412

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 157 IVTSSGDMSCALWDIETGQQCAS-------FIGHTGDVMSLSLAPDMRT-FVSGACDASA 208
           ++++S D +  LWDI    +          F GHT  V  ++      + F S A D   
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 209 KLWDIRDGSCKQ---TFPGHESDINAVTFFP-NGWAFATGSDDATCRLFDIRADQELAMY 264
            +WD R+ +  +   T   H +++N ++F P + +  ATGS D T  L+D+R + +L ++
Sbjct: 261 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR-NLKLKLH 319
Query: 265 SHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMK 301
           S ++    I  V +S     +LA    D   +VWD  K
Sbjct: 320 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/260 (18%), Positives = 114/260 (43%), Gaps = 23/260 (8%)
Query: 57  KIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGG 116
           ++  + W  D  ++V+  ++G+L +W+  T   ++ +    + +++  +   G+ +    
Sbjct: 110 QVTCLAWSHDGNSIVTGVENGELRLWNK-TGALLNVLNFHRAPIVSVKWNKDGTHIISMD 168
Query: 117 LDNICSIYSLKTREGNVRVSRELP----------GHTGYLSC---CRFLDDNQIVTSSGD 163
           ++N+  ++++ +  G V    EL            H+G  S      ++DD++ V     
Sbjct: 169 VENVTILWNVIS--GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226
Query: 164 MSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP 223
            +  ++ I         IGH G +  L      +  +S + D + ++W   +G+ +  F 
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
Query: 224 GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVA--FSRS 281
           GH   I + ++  +    +  S D + RL+ ++ +  LA+    +I+ G+   A   S+ 
Sbjct: 287 GHSQSIVSASWVGDDKVISC-SMDGSVRLWSLKQNTLLAL----SIVDGVPIFAGRISQD 341
Query: 282 GRLLLAGYDDFNCNVWDSMK 301
           G+     + D   NV+D  K
Sbjct: 342 GQKYAVAFMDGQVNVYDLKK 361

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 156 QIVTSSGDMSCALWDIETGQQ-------CASFIGHTGDVMSLSLAPDMRT-FVSGACDAS 207
            ++++S D +  LWDI  G +        A F GH+  V  ++      + F S A D  
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 208 AKLWDIRDGSCKQT---FPGHESDINAVTFFP-NGWAFATGSDDATCRLFDIRADQELAM 263
             +WD R  +  +       H +++N ++F P + +  ATGS D T  L+D+R + +L +
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR-NLKLKL 312
Query: 264 YSHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMK 301
           ++ ++    I  V +S     +LA    D   NVWD  K
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 27/232 (11%)
Query: 51  LRGHLAKIYAMHWGSD-SRNLVSASQDGKLIVWD-SYTTNKVHAIPLRSSWVMTCAYAPS 108
           LRGH  + Y + W  + S +L+SAS D  + +WD S    +   +  ++ +    A    
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 109 GSFVAC-----GGLDNICSIYSLKTREGNV-RVSRELPGHTGYLSCCRFLDDNQIV--TS 160
            S+        G + +   +    TR  N  + S  +  HT  ++C  F   ++ +  T 
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 161 SGDMSCALWDIETGQ-QCASFIGHTGDVMSLSLAPDMRTFV-SGACDASAKLWDI----- 213
           S D + ALWD+   + +  SF  H  ++  +  +P   T + S   D    +WD+     
Sbjct: 293 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE 352
Query: 214 -------RDGSCKQTF--PGHESDINAVTFFPN-GWAFATGSDDATCRLFDI 255
                   DG  +  F   GH + I+  ++ PN  W   + S+D   +++ +
Sbjct: 353 EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 14/159 (8%)
Query: 156 QIVTSSGDMSCALWDIETGQQCAS-------FIGHTGDVMSLSLAPDMRT-FVSGACDAS 207
            ++++S D +  LWDI    +          F GHT  V  +S      + F S A D  
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 208 AKLWDIRDGSCKQ---TFPGHESDINAVTFFP-NGWAFATGSDDATCRLFDIRADQELAM 263
             +WD R  +  +   +   H +++N ++F P + +  ATGS D T  L+D+R + +L +
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR-NLKLKL 310
Query: 264 YSHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMK 301
           +S ++    I  V +S     +LA    D   NVWD  K
Sbjct: 311 HSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSK 349

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 29/212 (13%)
Query: 156 QIVTSSGDMSCALWDIETGQQ-------CASFIGHTGDVMSLSLAPDMRT-FVSGACDAS 207
            ++++S D +  LWDI  G +        A F GH+  V  ++      + F S A D  
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 208 AKLWDIRDGSCKQT---FPGHESDINAVTFFP-NGWAFATGSDDATCRLFDIRADQELAM 263
             +WD R  +  +       H +++N ++F P + +  ATGS D T  L+D+R + +L +
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR-NLKLKL 312
Query: 264 YSHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMK--------------TERAGIL 308
           ++ ++    I  V +S     +LA    D   NVWD  K               E   I 
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Query: 309 AGHDNRVSCLG-VTEDGMAVATGSWDSFLRIW 339
            GH  ++S       +   + + S D+ ++IW
Sbjct: 373 GGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 18/228 (7%)
Query: 49  RTLRGHLAKIYAMHWGSDSRNLVSASQDGKL----IVWDSYTTNKVHAIPLRSSWVMTCA 104
           ++L+ +  KI++  +      L + S D K+    + +D +T   V         + + A
Sbjct: 8   KSLKLYKEKIWSFDFSQGI--LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVA 65
Query: 105 YAPSGSFVACGGLDNICSIYSLKT---REGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTS 160
           + P  S +A G  D+  SI++ +    R   + +   + GH   +    + +D   + T 
Sbjct: 66  WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC 125
Query: 161 SGDMSCALWDI-ETGQQ--CASFIG-HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG 216
           S D S  +W+  E+G++  C S +  H+ DV  +   P      S + D + ++W   D 
Sbjct: 126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD 185
Query: 217 --SCKQTFPGHESDINAVTFFPNGWAF--ATGSDDATCRLFDIRADQE 260
              C     GHE  + +  F      F   +GSDD+T R++    D E
Sbjct: 186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE 233

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 119/295 (40%), Gaps = 28/295 (9%)
Query: 61  MHWGSDSRNLVSASQD----GKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSF-VACG 115
           + W S+S+ + +  +     G + ++D+ T+N       R+  + +  + PS  F +  G
Sbjct: 109 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA--MNSVDFKPSRPFRIISG 166
Query: 116 GLDNICSIYSLKTREGN-VRVSRELPGHTGYLSCCRFLDDNQIVTSSG-DMSCALWDIET 173
             DN  +I+     EG   +       HT ++   R+  D  +  S+G D +  L++   
Sbjct: 167 SDDNTVAIF-----EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221
Query: 174 GQQCASF-------IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP-GH 225
           G +   F       + H+G V  L+ +PD     S + D + K+W++     ++T P G 
Sbjct: 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 281
Query: 226 ESDINAVTFFPNGWAFATGSDDATCRLFDIR-ADQELAMYSHDNIICGITSVAFSRSGRL 284
             +   +       A  + S +      +      +   Y H+  I  ++S   S  G+ 
Sbjct: 282 RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSS---SADGKT 338
Query: 285 LLAGYDDFNCNVWD-SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI 338
           L +   + + N WD S           H   ++ +  T  G  + T SWD  L++
Sbjct: 339 LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKV 392

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 98/247 (39%), Gaps = 44/247 (17%)
Query: 109 GSFVACGGLDNICSIYSLK--------TREGNVRVSRELPG-HTGYLSCCRFL--DDNQI 157
           G ++  GG D +  +Y L+        T +    + R+ P  H   +   ++   D    
Sbjct: 56  GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115
Query: 158 VTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAP--DMRTFVS-GACDASAKLWDIR 214
            +SS D +  +WD  T  Q A        V S  ++P       V+ G      +L D++
Sbjct: 116 TSSSFDKTLKVWDTNT-LQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174
Query: 215 DGSCKQTFPGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGI 273
            GSC     GH  +I AV++ P   +  AT S D+  +L+D+R                 
Sbjct: 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR----------------- 217
Query: 274 TSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWD 333
                 R+   L+   D  N     S   E A     H+ +V+ L  T DG+ + T   D
Sbjct: 218 ------RASGCLIT-LDQHNGK--KSQAVESAN--TAHNGKVNGLCFTSDGLHLLTVGTD 266
Query: 334 SFLRIWN 340
           + +R+WN
Sbjct: 267 NRMRLWN 273

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 7/152 (4%)
Query: 102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSS 161
            C+ +     V  G  D    ++    +EG++  + +    + + +      +N+ +T+S
Sbjct: 107 VCSLSFQDGVVISGSWDKTAKVW----KEGSLVYNLQAHNASVWDAKVVSFSENKFLTAS 162
Query: 162 GDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQT 221
            D +  LW  +  +   +F G   DV+      D   F+S + D   KL D   G   +T
Sbjct: 163 ADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRT 220
Query: 222 FPGHESDINAVTFFPNGWAFATGSDDATCRLF 253
           + GHES +  +   PNG   + G +D T R++
Sbjct: 221 YEGHESFVYCIKLLPNGDIVSCG-EDRTVRIW 251

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 117/287 (40%), Gaps = 51/287 (17%)
Query: 51  LRGHLAKIYAMHWGSDSRN--LVSASQDGKLIVW--DSYTTNKVHAIPLRSSWVMTCAYA 106
           LRGH   ++ + W        L S S D K+I+W  ++ T  K H      S V +  +A
Sbjct: 53  LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWA 112
Query: 107 PS--GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDM 164
           P   G  +ACG  D   S+ +  T EG   V +    HT  + C      N +  +   +
Sbjct: 113 PHDYGLILACGSSDGAISLLTY-TGEGQWEVKKINNAHT--IGC------NAVSWAPAVV 163
Query: 165 SCALWDIETGQQCASFIGHTGDVMSLSLAPD-MRTFVSGACDASAKLW-DIRDGSCKQTF 222
             +L D  +GQ+                 P+ ++ F SG CD   KLW +  DG  K+  
Sbjct: 164 PGSLIDHPSGQK-----------------PNYIKRFASGGCDNLIKLWKEEEDGQWKE-- 204
Query: 223 PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSG 282
              E  + A + +    A+A      T  +     D  + +++ D+      + + + S 
Sbjct: 205 ---EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD------ASSNTWSP 255
Query: 283 RLLLAGYDDFNCNVWDSMKTERAGILA--GHDNRVSCLGVTEDGMAV 327
           +LL      FN  VW    +  A ILA  G DN+V+    + DG  V
Sbjct: 256 KLL----HKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWV 298

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 143 TGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSG 202
           T  L   RF+    + T+ GD+     +    ++      H  ++  L   P     +S 
Sbjct: 101 TAKLQMRRFI----LGTTEGDIKVLDSNFNLQREIDQ--AHVSEITKLKFFPSGEALISS 154
Query: 203 ACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFD 254
           + D   K+W ++DGS  +T  GH + +  +     G    + S D T RL++
Sbjct: 155 SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 143 TGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSG 202
           T  L   RF+    + T+ GD+     +    ++      H  ++  L   P     +S 
Sbjct: 104 TAKLQMRRFI----LGTTEGDIKVLDSNFNLQREIDQ--AHVSEITKLKFFPSGEALISS 157
Query: 203 ACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFD 254
           + D   K+W ++DGS  +T  GH + +  +     G    + S D T RL++
Sbjct: 158 SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 52  RGHLAKIYAMHW-GSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGS 110
           +GH   I ++ W   D   L+S+ +D  +++W+  +  ++   P R +W     +AP   
Sbjct: 259 QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAP 318
Query: 111 -FVACGGLDNICSIYSLK 127
              AC   DN   + +L+
Sbjct: 319 DLFACASFDNKIEVQTLQ 336

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.98
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.98
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.96
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.95
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.95
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.86
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.86
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.85
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.84
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.82
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.82
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.81
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.79
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.78
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.78
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.77
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.77
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.76
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.75
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.75
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.75
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.73
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.73
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.72
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.72
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.71
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.71
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.7
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.7
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.7
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.68
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.67
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.66
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.66
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.63
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.63
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.62
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.61
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.61
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.61
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.58
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.58
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.56
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.55
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.53
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.53
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.52
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.51
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.49
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.48
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.47
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.46
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.46
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.45
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.45
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.44
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.42
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.39
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.34
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.33
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.33
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.32
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.32
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.31
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.29
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.28
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.25
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.25
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.22
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.21
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.2
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.14
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.04
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.03
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.02
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.02
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.98
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.96
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.96
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.94
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.91
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.9
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.89
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.88
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.86
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.85
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.83
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.83
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.81
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.81
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.81
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.8
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.8
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.8
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.78
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.78
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.74
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.74
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.69
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.66
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.65
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.59
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.55
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.44
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.39
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.38
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.38
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.35
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.31
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.31
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.27
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.25
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.24
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.24
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.23
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.12
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.11
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.06
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.05
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.99
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.94
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.93
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.91
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.87
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.82
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.81
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.8
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.78
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.76
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.76
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.68
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.67
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.63
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.61
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.57
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.52
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.47
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.46
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.42
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.38
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.37
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.35
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.32
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.28
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.26
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.16
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.15
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.09
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.08
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.05
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.04
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.01
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.92
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.92
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.91
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.84
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.77
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.67
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.63
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.52
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.47
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.36
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.33
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.33
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.12
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.89
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.87
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.68
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.62
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.4
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.31
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.59
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.47
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.37
3ott_A	758	Two-component system sensor histidine kinase; beta	93.12
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.07
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.38
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.21
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	91.63
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	91.57
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	91.49
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	91.43
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	89.18
3ott_A	758	Two-component system sensor histidine kinase; beta	86.55
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	85.89
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.88

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.6e-62  Score=429.73  Aligned_cols=340  Identities=85%  Similarity=1.404  Sum_probs=317.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCccccceeeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEE
Q psy15421          1 MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLI   80 (340)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~   80 (340)
                      |+|++.+++|++.+++.++.+++...+..+.....+..+.++++.+.+++|+||.+.|++++|+|++++|++++.||+|+
T Consensus         1 ~~e~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~   80 (340)
T 1got_B            1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLI   80 (340)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCCCCCCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhcccchhHHhhcCCCccccccchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence            68999999999999999998888766665655566677777788888999999999999999999999999999999999


Q ss_pred             EEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEE
Q psy15421         81 VWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTS  160 (340)
Q Consensus        81 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~  160 (340)
                      +||..+++.+..++.|...|.+++|+|+++++++|+.|+.+++|++.+.+........+.+|...+.++.|.+++.++++
T Consensus        81 iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~  160 (340)
T 1got_B           81 IWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS  160 (340)
T ss_dssp             EEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEE
T ss_pred             EEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEE
Confidence            99999999999999999999999999999999999999999999998776666667778899999999999988899999


Q ss_pred             eCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCE
Q psy15421        161 SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA  240 (340)
Q Consensus       161 ~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~  240 (340)
                      +.|+.|++||+++++....+.+|.+.|.+++|+|+++++++|+.||+|++||++++.+...+.+|..+|++++|+|++.+
T Consensus       161 s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~  240 (340)
T 1got_B          161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA  240 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSE
T ss_pred             ECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEE
Q psy15421        241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV  320 (340)
Q Consensus       241 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~  320 (340)
                      |++|+.|+.|++||++..+.+..+.+......|.+++|+|++++|++|+.|+.|++||..+.+....+.+|.+.|++++|
T Consensus       241 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~  320 (340)
T 1got_B          241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV  320 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEE
Confidence            99999999999999998888777766665567999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEeeCCCcEEecC
Q psy15421        321 TEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       321 s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +|+|.+|+|||.|++|+|||
T Consensus       321 s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          321 TDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTSSCEEEEETTSCEEEEC
T ss_pred             cCCCCEEEEEcCCccEEecC
Confidence            99999999999999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.3e-57  Score=401.21  Aligned_cols=337  Identities=54%  Similarity=0.971  Sum_probs=302.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCccccceeeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEe
Q psy15421          4 LDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD   83 (340)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd   83 (340)
                      +..+++|.+.++..+++.++...+..+..........+.+..+..++|+||.+.|++++|+|++++|+||+.||+|++||
T Consensus        13 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd   92 (354)
T 2pbi_B           13 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD   92 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHTTTSCCCCCCCCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCccHHHhccCCccccccccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            45678899999999998888776666666666666667777788899999999999999999999999999999999999


Q ss_pred             CCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCC--ceEEEEeecCCCcceEEEEEcCCC-eEEEE
Q psy15421         84 SYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREG--NVRVSRELPGHTGYLSCCRFLDDN-QIVTS  160 (340)
Q Consensus        84 ~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~  160 (340)
                      ..+++....+..|...|.+++|+|++.++++|+.|+.+++|++.....  .......+.+|...+.++.|.+++ .++++
T Consensus        93 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~  172 (354)
T 2pbi_B           93 SFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA  172 (354)
T ss_dssp             TTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEE
T ss_pred             CCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEE
Confidence            999999999999999999999999999999999999999999865321  112234566899999999998765 79999


Q ss_pred             eCCCeEEEEECCCCceEEEEecCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCC
Q psy15421        161 SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAP--DMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG  238 (340)
Q Consensus       161 ~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~  238 (340)
                      +.|++|++||+++++.+..+.+|...+.+++++|  +++++++|+.||+|++||+++++++..+.+|...|++++|+|++
T Consensus       173 s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~  252 (354)
T 2pbi_B          173 SGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG  252 (354)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred             eCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC
Confidence            9999999999999999999999999999999988  46899999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEE
Q psy15421        239 WAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCL  318 (340)
Q Consensus       239 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~  318 (340)
                      .+|++|+.|++|++||++..+.+..+........+.+++|+|++++|++|+.|++|++||..+++.+..+.+|.+.|+++
T Consensus       253 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l  332 (354)
T 2pbi_B          253 DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTL  332 (354)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEE
Confidence            99999999999999999988777666555445568999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCEEEEeeCCCcEEecC
Q psy15421        319 GVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       319 ~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +|+|||.+|+|||.|++|+||+
T Consensus       333 ~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          333 RVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EECTTSSCEEEEETTSEEEEEC
T ss_pred             EECCCCCEEEEEcCCCCEEecC
Confidence            9999999999999999999997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.2e-55  Score=391.21  Aligned_cols=335  Identities=46%  Similarity=0.902  Sum_probs=278.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccccc----cCCCccccceeeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEE
Q psy15421          6 SLRQEAETLKNAIRDARKAACDTSLVTA----TGNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIV   81 (340)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i   81 (340)
                      .++++++.++..++..+....+..+...    ......+........++|+||.+.|++++|+|++++|+||+.|++|+|
T Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~i   92 (380)
T 3iz6_a           13 AATASVNSLRERLRQRRQTLLDTDVEKYSKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIV   92 (380)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGCCSCHHHHGGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCchHHhhhcccccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            3556677777666655553322211111    111111222344567899999999999999999999999999999999


Q ss_pred             EeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCC---CceEEEEeecCCCcceEEEEEcCC--Ce
Q psy15421         82 WDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTRE---GNVRVSRELPGHTGYLSCCRFLDD--NQ  156 (340)
Q Consensus        82 wd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~--~~  156 (340)
                      ||..+++....+..|...|.+++|+|++++|++|+.|+.+++|++....   +.......+.+|...+.++.|.++  ..
T Consensus        93 Wd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~  172 (380)
T 3iz6_a           93 WNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR  172 (380)
T ss_dssp             EETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSC
T ss_pred             EECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCE
Confidence            9999999999999999999999999999999999999999999986532   122233456789999998888764  46


Q ss_pred             EEEEeCCCeEEEEECCCCceEEEE-----ecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCeeeeEecCCCCCe
Q psy15421        157 IVTSSGDMSCALWDIETGQQCASF-----IGHTGDVMSLSLAP-DMRTFVSGACDASAKLWDIR-DGSCKQTFPGHESDI  229 (340)
Q Consensus       157 l~~~~~d~~v~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~~~sg~~dg~i~~wd~~-~~~~~~~~~~h~~~v  229 (340)
                      +++++.|++|++||+.+++.+..+     .+|...+.+++++| ++.++++|+.||+|++||++ .+.++..+.+|...|
T Consensus       173 l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v  252 (380)
T 3iz6_a          173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDI  252 (380)
T ss_dssp             EEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCC
T ss_pred             EEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCe
Confidence            999999999999999999888776     57889999999987 78899999999999999998 456788899999999


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCC-----cccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCcee
Q psy15421        230 NAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDN-----IICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTER  304 (340)
Q Consensus       230 ~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~  304 (340)
                      ++++|+|++.+|++|+.|++|++||+++++.+..+....     ....+++++|+|+|++|++|+.|+.|++||..+++.
T Consensus       253 ~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~  332 (380)
T 3iz6_a          253 NSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM  332 (380)
T ss_dssp             CEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE
T ss_pred             EEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce
Confidence            999999999999999999999999999888776654321     122488999999999999999999999999988887


Q ss_pred             eeee----ccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        305 AGIL----AGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       305 ~~~~----~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ...+    .+|.+.|++++|+|||.+|+|||.|++|+||+
T Consensus       333 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~  372 (380)
T 3iz6_a          333 VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA  372 (380)
T ss_dssp             EEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             EEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence            7665    68999999999999999999999999999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-53  Score=384.06  Aligned_cols=287  Identities=23%  Similarity=0.395  Sum_probs=267.3

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      ...+.+|.++|++++|+|++++|+||+.||+|+|||..+++....+.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDA  206 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg  206 (340)
                      +..    ....+.+|...|.++.|.+++ .+++++.|++|++||+++++.+..+.+|...+.+++++|++.++++|+.|+
T Consensus       181 ~~~----~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~  256 (410)
T 1vyh_C          181 GFE----CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ  256 (410)
T ss_dssp             SSC----EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCc----eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence            543    456678999999999998764 688999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEECCCCeeeeEecCCCCCeEEEEEecC--------------------CCEEEEEeCCCcEEEEeCcCCcEEEEeec
Q psy15421        207 SAKLWDIRDGSCKQTFPGHESDINAVTFFPN--------------------GWAFATGSDDATCRLFDIRADQELAMYSH  266 (340)
Q Consensus       207 ~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~--------------------~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  266 (340)
                      +|++||++++++...+.+|...|.+++|+|+                    +.++++|+.|+.|++||+++++.+..+..
T Consensus       257 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~  336 (410)
T 1vyh_C          257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG  336 (410)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC
Confidence            9999999999999999999999999999996                    67899999999999999998887766542


Q ss_pred             CCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        267 DNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       267 ~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                        +...|.+++|+|++++|++|+.|++|++||..+++++..+.+|...|++++|+|++.+|+|||.|++|+||+
T Consensus       337 --h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          337 --HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  408 (410)
T ss_dssp             --CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             --CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence              334699999999999999999999999999999999999999999999999999999999999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.2e-51  Score=357.05  Aligned_cols=287  Identities=20%  Similarity=0.304  Sum_probs=258.4

Q ss_pred             eEEecCccCcEEEEEEcCC----CCeEEEEeCCCeEEEEeCCCCCe--eEEeeCCCCcEEEEEECCCCCEEEEEeCCCeE
Q psy15421         48 RRTLRGHLAKIYAMHWGSD----SRNLVSASQDGKLIVWDSYTTNK--VHAIPLRSSWVMTCAYAPSGSFVACGGLDNIC  121 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~----~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v  121 (340)
                      .+.+++|.+.|++++|+|+    +.+|+||+.|++|+|||..+.+.  ...+.+|...|.+++|+|++.++++++.|++|
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i  104 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI  104 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence            4577899999999999875    56899999999999999876653  34678999999999999999999999999999


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEE
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV  200 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  200 (340)
                      ++||+.++.    ....+..|...+.++.|++++ .+++++.|+.|++||+++++....+..|...+.+++|+|++++++
T Consensus       105 ~lWd~~~~~----~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la  180 (321)
T 3ow8_A          105 RLWDLENGK----QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLA  180 (321)
T ss_dssp             EEEETTTTE----EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEE
T ss_pred             EEEECCCCC----EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEE
Confidence            999997653    345566777888888898765 688889999999999999999888999999999999999999999


Q ss_pred             EEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcC
Q psy15421        201 SGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSR  280 (340)
Q Consensus       201 sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  280 (340)
                      +|+.||.|++||+++++++..+++|..+|.+++|+|++.+|++|+.|+.|++||++..+.+..+.  .+...|.+++|+|
T Consensus       181 sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~sp  258 (321)
T 3ow8_A          181 SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS--GHASWVLNVAFCP  258 (321)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECT
T ss_pred             EEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc--CCCCceEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999877766553  3334699999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        281 SGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       281 ~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++++|++|+.|++|++||..+++++..+.+|.+.|++++|+|++.+|++++.|++|+|||
T Consensus       259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=8.8e-50  Score=345.39  Aligned_cols=286  Identities=20%  Similarity=0.379  Sum_probs=254.6

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      ..+++|++|.+.|++++|+|++++|++++.||+|++||+.+++.+..+..|..+|.+++|+|++++|++|+.|++|++|+
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCc-eEEEEecCCCCeEEEEEcC-CCCEEEEE
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQ-QCASFIGHTGDVMSLSLAP-DMRTFVSG  202 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~sg  202 (340)
                      +.+++    ....+.+|...|.++.|++++ .+++++.|++|++||++++. ....+.+|...|.+++|+| ++..+++|
T Consensus        84 ~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg  159 (304)
T 2ynn_A           84 YNTGE----KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (304)
T ss_dssp             TTTCC----EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred             CCCCc----EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence            97754    345678999999999998765 68899999999999998874 4567788999999999999 67899999


Q ss_pred             eCCCcEEEEECCCCeeeeEe-cCCCCCeEEEEEec--CCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEc
Q psy15421        203 ACDASAKLWDIRDGSCKQTF-PGHESDINAVTFFP--NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS  279 (340)
Q Consensus       203 ~~dg~i~~wd~~~~~~~~~~-~~h~~~v~~v~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  279 (340)
                      +.|++|++||++++.....+ .+|...+..+.|.|  ++.++++|+.|+.|++||+++++.+..+.  .+...|.+++|+
T Consensus       160 s~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~--~h~~~v~~~~~~  237 (304)
T 2ynn_A          160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE--GHMSNVSFAVFH  237 (304)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEC
T ss_pred             eCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC--CCCCCEEEEEEC
Confidence            99999999999887765555 45667899999987  67899999999999999999888776664  233469999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCC--EEEEeeCCCcEE
Q psy15421        280 RSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGM--AVATGSWDSFLR  337 (340)
Q Consensus       280 ~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~--~l~s~s~D~~i~  337 (340)
                      |++++|++|+.|++|++||..+++.+..+..|.+.+++++|+|++.  ++++|+.||.+.
T Consensus       238 p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~  297 (304)
T 2ynn_A          238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV  297 (304)
T ss_dssp             SSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence            9999999999999999999999999999999999999999999875  588888777654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.5e-49  Score=341.86  Aligned_cols=287  Identities=24%  Similarity=0.373  Sum_probs=252.2

Q ss_pred             eEEeEEecCccCcEEEEEEcCCC-CeEEEEeCCCeEEEEeCCCC-----CeeEEeeCCCCcEEEEEECCCCCEEEEEeCC
Q psy15421         45 MRTRRTLRGHLAKIYAMHWGSDS-RNLVSASQDGKLIVWDSYTT-----NKVHAIPLRSSWVMTCAYAPSGSFVACGGLD  118 (340)
Q Consensus        45 ~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d  118 (340)
                      ...+.+|+||.+.|++++|+|++ ++|+||+.|++|++||+...     ..+..+.+|...|.+++|+|++++|++|+.|
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D   86 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD   86 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence            45567899999999999999965 79999999999999998642     2456788999999999999999999999999


Q ss_pred             CeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCC--
Q psy15421        119 NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPD--  195 (340)
Q Consensus       119 ~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--  195 (340)
                      ++|++||+.+++    ....+.+|...|.++.|.+++ .+++++.|++|++||++ ++.+..+.+|...+.++++.|.  
T Consensus        87 ~~v~~wd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~  161 (319)
T 3frx_A           87 KTLRLWDVATGE----TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEK  161 (319)
T ss_dssp             SEEEEEETTTTE----EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC--
T ss_pred             CEEEEEECCCCC----eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCC
Confidence            999999997653    445678999999999998764 68899999999999996 4677888899999999999985  


Q ss_pred             ----CCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCccc
Q psy15421        196 ----MRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIIC  271 (340)
Q Consensus       196 ----~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~  271 (340)
                          +..+++|+.|+.|++||+++.+....+.+|..+|++++|+|++.+|++|+.|+.|++||+.+.+.+..+...   .
T Consensus       162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~  238 (319)
T 3frx_A          162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---D  238 (319)
T ss_dssp             ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---S
T ss_pred             CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---C
Confidence                448999999999999999999988999999999999999999999999999999999999988887766543   3


Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeec--------cCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        272 GITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA--------GHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       272 ~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~--------~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .|.+++|+|++.+|++++.++ +++|+.........+.        .|...+.+++|+|||++|++|+.|++|+|||
T Consensus       239 ~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          239 EVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             CEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence            589999999999999988765 9999987766554443        3567899999999999999999999999996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.8e-48  Score=336.12  Aligned_cols=293  Identities=23%  Similarity=0.417  Sum_probs=261.0

Q ss_pred             eeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEE
Q psy15421         44 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSI  123 (340)
Q Consensus        44 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i  123 (340)
                      ....+.++.+|.+.|.+++|+|++++|++++.||.|++|+..+++....+..|...|.+++|+|++++|++++.|+.|++
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   91 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI   91 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence            44567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEE
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSG  202 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg  202 (340)
                      |++.++.    ....+.+|...+.++.|.++ ..+++++.|+.|++||+++++.+..+..|...+.+++|+|+++++++|
T Consensus        92 wd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
T 4ery_A           92 WDVSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS  167 (312)
T ss_dssp             EETTTCC----EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EECCCCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence            9997653    34567789999999999876 478899999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEECCCCeeeeEe-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeec-CCcccceEEEEEcC
Q psy15421        203 ACDASAKLWDIRDGSCKQTF-PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSH-DNIICGITSVAFSR  280 (340)
Q Consensus       203 ~~dg~i~~wd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s~  280 (340)
                      +.||.|++||+++++....+ ..+..++..++|+|++.++++++.|+.|++||+++.+.+..+.. ......+......+
T Consensus       168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (312)
T 4ery_A          168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT  247 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred             eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence            99999999999998877665 45667899999999999999999999999999998887766542 22222233334457


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEee--CCCcEEecC
Q psy15421        281 SGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGS--WDSFLRIWN  340 (340)
Q Consensus       281 ~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s--~D~~i~iW~  340 (340)
                      ++.+|++|+.|+.|++||..+.+.+..+.+|.+.|.+++|+|++.+|++++  .|++|++|+
T Consensus       248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~  309 (312)
T 4ery_A          248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK  309 (312)
T ss_dssp             SSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred             CCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence            889999999999999999999999999999999999999999999999997  599999995

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-48  Score=344.33  Aligned_cols=292  Identities=20%  Similarity=0.328  Sum_probs=246.6

Q ss_pred             EEeEEecCccC-cEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeE---EeeCCCCcEEEEEECCCCCEEEEEeCCCeE
Q psy15421         46 RTRRTLRGHLA-KIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVH---AIPLRSSWVMTCAYAPSGSFVACGGLDNIC  121 (340)
Q Consensus        46 ~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v  121 (340)
                      ....+|++|.+ .|++++|+|++++|++|+.|++|+|||+.++....   ...+|...|.+++|+|++++|++|+.|+++
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v   85 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT   85 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence            45678999998 99999999999999999999999999998775332   235789999999999999999999999999


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCc---eEEEEecCCCCeEEEEEcCCCC
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQ---QCASFIGHTGDVMSLSLAPDMR  197 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~  197 (340)
                      ++|++..+.  ......+.+|...|.++.|++++ .|++++.|++|++||+..+.   .+..+.+|...|.+++|+|+++
T Consensus        86 ~iw~~~~~~--~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           86 CIWKKNQDD--FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             EEEEECCC---EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             EEEEccCCC--eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence            999986543  33456788999999999998764 68899999999999998764   3556778999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCe--eeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCc---------------E
Q psy15421        198 TFVSGACDASAKLWDIRDGS--CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ---------------E  260 (340)
Q Consensus       198 ~~~sg~~dg~i~~wd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~---------------~  260 (340)
                      ++++|+.|++|++||.+++.  +...+.+|...|.+++|+|++.+|++|+.|++|++||.....               .
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~  243 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC  243 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence            99999999999999998875  456789999999999999999999999999999999964211               1


Q ss_pred             EEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCce---------eeeeeccCCcceEEEEECCCC-CEEEEe
Q psy15421        261 LAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTE---------RAGILAGHDNRVSCLGVTEDG-MAVATG  330 (340)
Q Consensus       261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~---------~~~~~~~h~~~i~~~~~s~d~-~~l~s~  330 (340)
                      +..+. ..+...|.+++|+|++..|++++.|+.|++|+.....         ....+.+|.+.|++++|+|++ .+|+||
T Consensus       244 ~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~  322 (345)
T 3fm0_A          244 ICTLS-GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC  322 (345)
T ss_dssp             EEEEC-SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEE
T ss_pred             eEEec-CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEc
Confidence            11111 1133469999999999999999999999999865432         112346899999999999998 599999


Q ss_pred             eCCCcEEecC
Q psy15421        331 SWDSFLRIWN  340 (340)
Q Consensus       331 s~D~~i~iW~  340 (340)
                      |.||+|++|+
T Consensus       323 s~Dg~v~~W~  332 (345)
T 3fm0_A          323 SDDGEVAFWK  332 (345)
T ss_dssp             ETTSCEEEEE
T ss_pred             CCCCcEEEEE
Confidence            9999999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.6e-47  Score=336.74  Aligned_cols=288  Identities=24%  Similarity=0.382  Sum_probs=242.5

Q ss_pred             eeeEEeEEecCccCcEEEEEE-----cC-CCCeEEEEeCCCeEEEEeCCCC-------CeeEEeeCCCCcEEEEEECCCC
Q psy15421         43 IQMRTRRTLRGHLAKIYAMHW-----GS-DSRNLVSASQDGKLIVWDSYTT-------NKVHAIPLRSSWVMTCAYAPSG  109 (340)
Q Consensus        43 ~~~~~~~~~~~h~~~v~~~~~-----s~-~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~i~~v~~~~~~  109 (340)
                      ++.....+|+||.+.|++++|     ++ ++++|+||+.|++|++||+.+.       .....+.+|...|.+++|+|++
T Consensus         9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~   88 (343)
T 2xzm_R            9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN   88 (343)
T ss_dssp             EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred             eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence            344566789999999999999     76 8999999999999999998754       2356678999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEe---cCCC
Q psy15421        110 SFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFI---GHTG  185 (340)
Q Consensus       110 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~  185 (340)
                      .++++|+.|++|++||+.++.    ....+.+|...|.++.|++++ .+++++.|+.|++||+.. .......   .|..
T Consensus        89 ~~l~s~s~D~~v~lwd~~~~~----~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~  163 (343)
T 2xzm_R           89 CFAISSSWDKTLRLWDLRTGT----TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSD  163 (343)
T ss_dssp             TEEEEEETTSEEEEEETTSSC----EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSS
T ss_pred             CEEEEEcCCCcEEEEECCCCc----EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCc
Confidence            999999999999999997653    345677899999999998765 688999999999999974 3333333   6888


Q ss_pred             CeEEEEEcCCC----------CEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q psy15421        186 DVMSLSLAPDM----------RTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDI  255 (340)
Q Consensus       186 ~v~~~~~~~~~----------~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  255 (340)
                      .+.+++|+|++          .++++++.||.|++||. .......+.+|..+|++++|+|++++|++|+.|+.|++||+
T Consensus       164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~  242 (343)
T 2xzm_R          164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI  242 (343)
T ss_dssp             CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred             eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            99999999987          78999999999999994 56677788999999999999999999999999999999999


Q ss_pred             cC-CcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeee--eec-----------cCCcceEEEEEC
Q psy15421        256 RA-DQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAG--ILA-----------GHDNRVSCLGVT  321 (340)
Q Consensus       256 ~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~--~~~-----------~h~~~i~~~~~s  321 (340)
                      .. ......+.+.   ..|.+++|+|+++++++| .|+.|++|+..+.+...  .+.           +|...|++++|+
T Consensus       243 ~~~~~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  318 (343)
T 2xzm_R          243 LNLTYPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN  318 (343)
T ss_dssp             SCCSSCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred             CCCcccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence            53 3333333222   348999999999988766 46679999987765433  332           788899999999


Q ss_pred             CCCCEEEEeeCCCcEEecC
Q psy15421        322 EDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       322 ~d~~~l~s~s~D~~i~iW~  340 (340)
                      |+|.+|++|+.||+|++|+
T Consensus       319 p~g~~l~sg~~Dg~v~~w~  337 (343)
T 2xzm_R          319 ALGKKLFAGFTDGVIRTFS  337 (343)
T ss_dssp             SSSCCEEEEETTSEEEEEE
T ss_pred             CCCCeEEEecCCceEEEEE
Confidence            9999999999999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-47  Score=335.64  Aligned_cols=291  Identities=20%  Similarity=0.320  Sum_probs=235.5

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC--eeEEe-eC-CCCcEEEEEECCCCCEEEEEeCCCeE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN--KVHAI-PL-RSSWVMTCAYAPSGSFVACGGLDNIC  121 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~-~~-~~~~i~~v~~~~~~~~l~~~~~d~~v  121 (340)
                      ...++|++|.++|++++|+|+  +|++|+.|++|++||+.++.  .+..+ .. |...|.+++|+|++++|++|+.|++|
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v   82 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV   82 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence            456789999999999999988  99999999999999997653  34444 34 88999999999999999999999999


Q ss_pred             EEEEccCCC---CceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCC----ceEEEEecCCCCeEEEEEc
Q psy15421        122 SIYSLKTRE---GNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETG----QQCASFIGHTGDVMSLSLA  193 (340)
Q Consensus       122 ~i~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~  193 (340)
                      ++|++....   ........+.+|...|.++.|++++ .|++++.|++|++||+...    +.+..+.+|...|.+++|+
T Consensus        83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~  162 (330)
T 2hes_X           83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH  162 (330)
T ss_dssp             EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred             EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence            999985422   1223456678999999999998765 6889999999999999432    4566788999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCC--eeeeEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEeCcCC--------cEE
Q psy15421        194 PDMRTFVSGACDASAKLWDIRDG--SCKQTFPGHESDINAVTFFPN--GWAFATGSDDATCRLFDIRAD--------QEL  261 (340)
Q Consensus       194 ~~~~~~~sg~~dg~i~~wd~~~~--~~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~d~~i~iwd~~~~--------~~~  261 (340)
                      |++.++++|+.|++|++||.+++  +++..+.+|...|.+++|+|+  +.++++|+.|++|++||+...        ...
T Consensus       163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~  242 (330)
T 2hes_X          163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE  242 (330)
T ss_dssp             SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence            99999999999999999998776  577889999999999999998  778999999999999998643        122


Q ss_pred             EEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCce--eee-eeccCCc-ceEEEEECC--CCCEEEEeeCCCc
Q psy15421        262 AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTE--RAG-ILAGHDN-RVSCLGVTE--DGMAVATGSWDSF  335 (340)
Q Consensus       262 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~--~~~-~~~~h~~-~i~~~~~s~--d~~~l~s~s~D~~  335 (340)
                      ..+. ..+...|.+++|+|++ +|++|+.|+.|++|+..+++  ... .+.+|.. .|++++|+|  ++.+|+|||.||+
T Consensus       243 ~~~~-~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~  320 (330)
T 2hes_X          243 AILP-DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI  320 (330)
T ss_dssp             EECC-SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred             eecc-cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence            2221 1234569999999765 88999999999999987663  232 3467887 899999999  7899999999999


Q ss_pred             EEecC
Q psy15421        336 LRIWN  340 (340)
Q Consensus       336 i~iW~  340 (340)
                      |+|||
T Consensus       321 v~~W~  325 (330)
T 2hes_X          321 VNFWS  325 (330)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4e-48  Score=340.29  Aligned_cols=284  Identities=18%  Similarity=0.177  Sum_probs=235.7

Q ss_pred             cCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCC-----------CCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCe
Q psy15421         52 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYT-----------TNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI  120 (340)
Q Consensus        52 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-----------~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~  120 (340)
                      ..|...|.+++|+|||++|++++ |+++++||...           .........+...|.+++|+|++ ++++|+.|++
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~  104 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA  104 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence            46778899999999999998877 77888887321           01111222345679999999985 6789999999


Q ss_pred             EEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC-E
Q psy15421        121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR-T  198 (340)
Q Consensus       121 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~  198 (340)
                      |++||+.+++..........+|...|.++.|++++ .|++++.|++|++||+++++.+..+.+|.+.|.+++|+|++. +
T Consensus       105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  184 (344)
T 4gqb_B          105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV  184 (344)
T ss_dssp             EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred             EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence            99999988765555555667899999999998765 688999999999999999999999999999999999999875 7


Q ss_pred             EEEEeCCCcEEEEECCCCeeeeEec--CCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEE
Q psy15421        199 FVSGACDASAKLWDIRDGSCKQTFP--GHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITS  275 (340)
Q Consensus       199 ~~sg~~dg~i~~wd~~~~~~~~~~~--~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~  275 (340)
                      +++|+.|++|++||++++++...+.  .|...+.+++|+|+ +.+|++|+.||.|++||+++.+.+..+.  .+...|++
T Consensus       185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~--~h~~~v~~  262 (344)
T 4gqb_B          185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA--VHSQCVTG  262 (344)
T ss_dssp             EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE--CCSSCEEE
T ss_pred             eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc--CCCCCEEE
Confidence            8899999999999999998877664  45667999999995 6789999999999999999887776654  23346999


Q ss_pred             EEEcCCC-cEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCC-EEEEeeCCCcEEecC
Q psy15421        276 VAFSRSG-RLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGM-AVATGSWDSFLRIWN  340 (340)
Q Consensus       276 ~~~s~~~-~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~-~l~s~s~D~~i~iW~  340 (340)
                      ++|+|++ ++|++|+.|++|++||..+++.. .+.+|.+.|++++|+|++. +|+|||.|++|++|+
T Consensus       263 v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~  328 (344)
T 4gqb_B          263 LVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV  328 (344)
T ss_dssp             EEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             EEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence            9999998 58999999999999999887754 5679999999999999986 577999999999995

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.9e-48  Score=342.46  Aligned_cols=287  Identities=19%  Similarity=0.240  Sum_probs=237.1

Q ss_pred             EecCccCcEEEEEEcCCCCeEEEEeC------CCeEEEEeCCCCCee----EEeeCCCCcEEEEEECCCCCEEEEEeCCC
Q psy15421         50 TLRGHLAKIYAMHWGSDSRNLVSASQ------DGKLIVWDSYTTNKV----HAIPLRSSWVMTCAYAPSGSFVACGGLDN  119 (340)
Q Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~----~~~~~~~~~i~~v~~~~~~~~l~~~~~d~  119 (340)
                      ...+|...|.+++|+|||++|+|++.      |++|++|+..++...    .....|...|.+++|+|++.++ +++.|+
T Consensus        37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg  115 (357)
T 4g56_B           37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSG  115 (357)
T ss_dssp             ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTS
T ss_pred             CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCC
Confidence            34689999999999999999999998      788999998766532    2344677889999999998655 578899


Q ss_pred             eEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC-
Q psy15421        120 ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR-  197 (340)
Q Consensus       120 ~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-  197 (340)
                      +|++||+.+++..........+|...|.++.|++++ .|++++.|+.|++||+++++.+..+.+|...|.+++|+|++. 
T Consensus       116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~  195 (357)
T 4g56_B          116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT  195 (357)
T ss_dssp             CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred             EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence            999999987654433334556899999999998765 688999999999999999999999999999999999999875 


Q ss_pred             EEEEEeCCCcEEEEECCCCeeeeEe--cCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceE
Q psy15421        198 TFVSGACDASAKLWDIRDGSCKQTF--PGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGIT  274 (340)
Q Consensus       198 ~~~sg~~dg~i~~wd~~~~~~~~~~--~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~  274 (340)
                      ++++++.||+|++||++++++...+  ..|...+.+++|+|+ +.+|++|+.|+.|++||+++.+.+..+.  .+...|+
T Consensus       196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~v~  273 (357)
T 4g56_B          196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQNIT  273 (357)
T ss_dssp             CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSCEE
T ss_pred             eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--ccceeEE
Confidence            7889999999999999998776544  456778999999997 5689999999999999999887766553  2334699


Q ss_pred             EEEEcCCC-cEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECC-CCCEEEEeeCCCcEEecC
Q psy15421        275 SVAFSRSG-RLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTE-DGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       275 ~~~~s~~~-~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~-d~~~l~s~s~D~~i~iW~  340 (340)
                      +++|+|++ ++|++|+.|++|++||..+++.+..+ +|.+.|++++|+| |+.+|+|||.|++|++||
T Consensus       274 ~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~  340 (357)
T 4g56_B          274 GLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH  340 (357)
T ss_dssp             EEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             EEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence            99999987 58999999999999999988877655 8999999999998 899999999999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.7e-47  Score=360.16  Aligned_cols=287  Identities=21%  Similarity=0.338  Sum_probs=242.2

Q ss_pred             EEecCccCcEEEEEEcCCCC-eEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         49 RTLRGHLAKIYAMHWGSDSR-NLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      .++.+|.+.|.+++|+|+++ .|++++.|++|++||..+++....+..|...|.+++|+|++++|++|+.|++|++|++.
T Consensus       141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~  220 (611)
T 1nr0_A          141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV  220 (611)
T ss_dssp             BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECC
Confidence            46789999999999999987 59999999999999998888888999999999999999999999999999999999987


Q ss_pred             CCCCceEEEEeec-------CCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEE---------------------
Q psy15421        128 TREGNVRVSRELP-------GHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCA---------------------  178 (340)
Q Consensus       128 ~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~---------------------  178 (340)
                      ++.    ....+.       +|...|.++.|++++ .|++++.|++|++||+.+++...                     
T Consensus       221 ~g~----~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (611)
T 1nr0_A          221 DGT----KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA  296 (611)
T ss_dssp             TCC----EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred             CCc----EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE
Confidence            653    222332       799999999998765 68899999999999998776443                     


Q ss_pred             ----------------------EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEe-cC-----------
Q psy15421        179 ----------------------SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTF-PG-----------  224 (340)
Q Consensus       179 ----------------------~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~-~~-----------  224 (340)
                                            .+.+|...|.+++|+|+++++++++.|++|++||++++.+...+ .+           
T Consensus       297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s  376 (611)
T 1nr0_A          297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT  376 (611)
T ss_dssp             EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC
T ss_pred             EEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEEC
Confidence                                  33478899999999999999999999999999999876543221 01           


Q ss_pred             ----------------------------------------------------------------------CCCCeEEEEE
Q psy15421        225 ----------------------------------------------------------------------HESDINAVTF  234 (340)
Q Consensus       225 ----------------------------------------------------------------------h~~~v~~v~~  234 (340)
                                                                                            |...+.+++|
T Consensus       377 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~  456 (611)
T 1nr0_A          377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL  456 (611)
T ss_dssp             TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE
T ss_pred             CCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE
Confidence                                                                                  2345678999


Q ss_pred             ecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCC-ceeeee--eccC
Q psy15421        235 FPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK-TERAGI--LAGH  311 (340)
Q Consensus       235 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~-~~~~~~--~~~h  311 (340)
                      +|+|+++|+|+.|+.|++||+.......... ..+...|++++|+|+|++|++++.|++|++|+..+ ++....  +.+|
T Consensus       457 spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H  535 (611)
T 1nr0_A          457 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH  535 (611)
T ss_dssp             CTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC
T ss_pred             eCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeec
Confidence            9999999999999999999998654321111 22334699999999999999999999999999877 555443  3459


Q ss_pred             CcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        312 DNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       312 ~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ...|++++|+|||++|+|||.|++|+|||
T Consensus       536 ~~~V~~v~fspdg~~lasgs~D~~v~lW~  564 (611)
T 1nr0_A          536 TAKVACVSWSPDNVRLATGSLDNSVIVWN  564 (611)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence            99999999999999999999999999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.1e-46  Score=335.65  Aligned_cols=280  Identities=24%  Similarity=0.449  Sum_probs=241.7

Q ss_pred             CccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCC------------------CcEEEEEECCCCCEEEE
Q psy15421         53 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRS------------------SWVMTCAYAPSGSFVAC  114 (340)
Q Consensus        53 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------------~~i~~v~~~~~~~~l~~  114 (340)
                      +|.+.|.+++|+||+++|++++ |+++++|++.+++.+..+..+.                  ..|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999876 7899999999998877665443                  24899999999999999


Q ss_pred             EeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEc
Q psy15421        115 GGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLA  193 (340)
Q Consensus       115 ~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~  193 (340)
                      |+.|+.|++||+.++    .....+.+|...|.++.|.++ ..+++++.|++|++||+++++....+. +...+.+++++
T Consensus       141 ~~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~  215 (393)
T 1erj_A          141 GAEDRLIRIWDIENR----KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVS  215 (393)
T ss_dssp             EETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC
T ss_pred             EcCCCeEEEEECCCC----cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEE
Confidence            999999999999764    345667899999999999876 478899999999999999988766654 56779999999


Q ss_pred             C-CCCEEEEEeCCCcEEEEECCCCeeeeEe-------cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcE-----
Q psy15421        194 P-DMRTFVSGACDASAKLWDIRDGSCKQTF-------PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQE-----  260 (340)
Q Consensus       194 ~-~~~~~~sg~~dg~i~~wd~~~~~~~~~~-------~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~-----  260 (340)
                      | +++++++|+.||.|++||++++.++..+       .+|...|.+++|+|++.++++|+.|+.|++||++....     
T Consensus       216 ~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~  295 (393)
T 1erj_A          216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK  295 (393)
T ss_dssp             STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccccc
Confidence            9 8999999999999999999998877666       57999999999999999999999999999999875322     


Q ss_pred             -------EEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECC------CCCEE
Q psy15421        261 -------LAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTE------DGMAV  327 (340)
Q Consensus       261 -------~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~------d~~~l  327 (340)
                             ...+  ..+...|.+++|+|++++|++|+.|+.|++||..+++++..+.+|.+.|.+++|++      ++.+|
T Consensus       296 ~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l  373 (393)
T 1erj_A          296 TPNSGTCEVTY--IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF  373 (393)
T ss_dssp             -----CEEEEE--ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred             CCCCCcceEEE--ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEE
Confidence                   1111  12334589999999999999999999999999999999999999999999999986      68899


Q ss_pred             EEeeCCCcEEecC
Q psy15421        328 ATGSWDSFLRIWN  340 (340)
Q Consensus       328 ~s~s~D~~i~iW~  340 (340)
                      +|||.||+|+||+
T Consensus       374 ~sgs~Dg~i~iW~  386 (393)
T 1erj_A          374 ATGSGDCKARIWK  386 (393)
T ss_dssp             EEEETTSEEEEEE
T ss_pred             EEECCCCcEEECc
Confidence            9999999999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=9.8e-46  Score=323.93  Aligned_cols=290  Identities=24%  Similarity=0.382  Sum_probs=245.2

Q ss_pred             eeeEEeEEecCccCcEEEEEEcCC-CCeEEEEeCCCeEEEEeCCCCC-----eeEEeeCCCCcEEEEEECCCCCEEEEEe
Q psy15421         43 IQMRTRRTLRGHLAKIYAMHWGSD-SRNLVSASQDGKLIVWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGSFVACGG  116 (340)
Q Consensus        43 ~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~i~~v~~~~~~~~l~~~~  116 (340)
                      .+...+.+|+||.+.|++++|+|+ +++|+|||.|++|+|||+.+.+     ....+.+|...|.+++|+|++++|++++
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~  105 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS  105 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence            344567789999999999999998 5799999999999999987654     3466788999999999999999999999


Q ss_pred             CCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceE-EEEecCCCCeEEEEEcC
Q psy15421        117 LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQC-ASFIGHTGDVMSLSLAP  194 (340)
Q Consensus       117 ~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~  194 (340)
                      .|+.+++|+.....    .......+...+....+.+. ..+++++.|+.+++||+...... ....+|...+..++|++
T Consensus       106 ~d~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~  181 (340)
T 4aow_A          106 WDGTLRLWDLTTGT----TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP  181 (340)
T ss_dssp             TTSEEEEEETTTTE----EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECS
T ss_pred             ccccceEEeecccc----eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEcc
Confidence            99999999986543    22334455666666666654 57899999999999999766543 33457889999999988


Q ss_pred             CC--CEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccc
Q psy15421        195 DM--RTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICG  272 (340)
Q Consensus       195 ~~--~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  272 (340)
                      ++  .++++++.|+.|++||++++++...+.+|..+|++++|+|++.+|++|+.|+.|++||+++.+.+..+....   .
T Consensus       182 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~  258 (340)
T 4aow_A          182 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD---I  258 (340)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS---C
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc---e
Confidence            65  468899999999999999999999999999999999999999999999999999999999988877765443   5


Q ss_pred             eEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeee---------ccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        273 ITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGIL---------AGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       273 i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~---------~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +.++.|+|++.++ +++.|+.|++||..+......+         .+|...|++++|+|||++|++|+.||+|+|||
T Consensus       259 v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~  334 (340)
T 4aow_A          259 INALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ  334 (340)
T ss_dssp             EEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            8999999987665 5567899999998877655443         46889999999999999999999999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6.9e-46  Score=350.51  Aligned_cols=286  Identities=17%  Similarity=0.248  Sum_probs=251.8

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC--eeEEeeCCCCcEEEEEECCCCCEEEEEeCCC----e
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN--KVHAIPLRSSWVMTCAYAPSGSFVACGGLDN----I  120 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~----~  120 (340)
                      ..++|.+|.+.|++++|+|++++|+||+.|++|+|||+.+++  ....+..|...|.+++|+|++++|++++.+.    .
T Consensus        51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~  130 (611)
T 1nr0_A           51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH  130 (611)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred             cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeE
Confidence            456789999999999999999999999999999999986543  4567788999999999999999999988763    6


Q ss_pred             EEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC--eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCE
Q psy15421        121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN--QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRT  198 (340)
Q Consensus       121 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  198 (340)
                      |++|+..  .    ....+.+|...|.++.|++++  .+++++.|++|++||..+++....+.+|...|.+++|+|++++
T Consensus       131 v~~wd~~--~----~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~  204 (611)
T 1nr0_A          131 VFLFDTG--T----SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL  204 (611)
T ss_dssp             EEETTTC--C----BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             EEEeeCC--C----CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCE
Confidence            7777742  2    224567899999999998875  5899999999999999998888899999999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCeeeeEec-------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecC-Ccc
Q psy15421        199 FVSGACDASAKLWDIRDGSCKQTFP-------GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHD-NII  270 (340)
Q Consensus       199 ~~sg~~dg~i~~wd~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-~~~  270 (340)
                      +++|+.|++|++||+.++++...+.       +|.+.|.+++|+|++.+|++++.|++|++||+.+++.+..+... ...
T Consensus       205 las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~  284 (611)
T 1nr0_A          205 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE  284 (611)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGG
T ss_pred             EEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCcc
Confidence            9999999999999999998888774       79999999999999999999999999999999988777665432 222


Q ss_pred             cceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        271 CGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       271 ~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .....+.|  +++.+++++.|+.+++|+...++....+.+|...|++++|+|||++|++|+.|++|++||
T Consensus       285 ~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd  352 (611)
T 1nr0_A          285 DQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWD  352 (611)
T ss_dssp             GCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence            33556666  678999999999999999988888888899999999999999999999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.5e-45  Score=345.57  Aligned_cols=283  Identities=28%  Similarity=0.518  Sum_probs=252.7

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      +..+.+.+|...|++++|+|+++.|++++.|++|++||.. ++.+..+..|...+.+++|+|+++++++++.|+.+++|+
T Consensus       294 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~  372 (577)
T 2ymu_A          294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN  372 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEc
Confidence            3456789999999999999999999999999999999975 456677888999999999999999999999999999999


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC  204 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~  204 (340)
                      ...     .....+.+|...+.++.|++++ .+++++.|+.|++||. +++.+..+.+|...+.+++|+|+++++++++.
T Consensus       373 ~~~-----~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~  446 (577)
T 2ymu_A          373 RNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASD  446 (577)
T ss_dssp             TTC-----CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCC-----CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcC
Confidence            532     2345677899999999998765 6888999999999996 56778889999999999999999999999999


Q ss_pred             CCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcE
Q psy15421        205 DASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRL  284 (340)
Q Consensus       205 dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
                      |++|++||. +++.+..+.+|..+|.+++|+|+++++++++.|+.|++||.. ++.+..+.  .+...|++++|+|++++
T Consensus       447 d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~~~~~~--~h~~~v~~l~~s~dg~~  522 (577)
T 2ymu_A          447 DKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT--GHSSSVRGVAFSPDGQT  522 (577)
T ss_dssp             TSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCEEEEEE--CCSSCEEEEEECTTSSC
T ss_pred             CCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CCEEEEEe--CCCCCEEEEEEcCCCCE
Confidence            999999996 567778889999999999999999999999999999999964 45554443  23346999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        285 LLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       285 l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |++|+.|+.|++|| .+++++..+.+|.+.|++++|+|||++|+|+|.|++|++||
T Consensus       523 l~s~~~dg~v~lwd-~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          523 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEECcCEEEEEe-CCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            99999999999999 47788899999999999999999999999999999999998

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-44  Score=318.77  Aligned_cols=286  Identities=17%  Similarity=0.282  Sum_probs=256.7

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      ....|.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++|++
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCC-----CeEEEEECCCCc-----------eEEEEecCCC--Ce
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGD-----MSCALWDIETGQ-----------QCASFIGHTG--DV  187 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d-----~~v~iwd~~~~~-----------~~~~~~~~~~--~v  187 (340)
                      .++.    ....+. +...+.++.|.+++ .+++++.+     +.|.+||+..+.           ....+..|..  .+
T Consensus       104 ~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (369)
T 3zwl_B          104 SNGQ----CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA  178 (369)
T ss_dssp             TTCC----EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred             CCCc----EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence            7654    222333 77789999998765 57778888     999999987653           3344556666  89


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeec
Q psy15421        188 MSLSLAPDMRTFVSGACDASAKLWDIRD-GSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSH  266 (340)
Q Consensus       188 ~~~~~~~~~~~~~sg~~dg~i~~wd~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  266 (340)
                      .+++|+|+++++++++.||.|++||+++ +.....+..|...|.+++|+|++.+|++++.|+.|++||+++.+.+..+.+
T Consensus       179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  258 (369)
T 3zwl_B          179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET  258 (369)
T ss_dssp             EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC
Confidence            9999999999999999999999999998 788888999999999999999999999999999999999998888777653


Q ss_pred             CCcccceEEEEEcCCCcEEEEEeCCC--------------cEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeC
Q psy15421        267 DNIICGITSVAFSRSGRLLLAGYDDF--------------NCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSW  332 (340)
Q Consensus       267 ~~~~~~i~~~~~s~~~~~l~~g~~d~--------------~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~  332 (340)
                      .   ..+.+++|+|+++++++++.++              .+++|+..+++.+..+.+|...|++++|+|++++|++|+.
T Consensus       259 ~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  335 (369)
T 3zwl_B          259 D---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE  335 (369)
T ss_dssp             S---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             C---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC
Confidence            3   3589999999999999999988              8999999999999999999999999999999999999999


Q ss_pred             CCcEEecC
Q psy15421        333 DSFLRIWN  340 (340)
Q Consensus       333 D~~i~iW~  340 (340)
                      ||.|++|+
T Consensus       336 dg~v~iw~  343 (369)
T 3zwl_B          336 DGFIRLHH  343 (369)
T ss_dssp             TSEEEEEE
T ss_pred             CCeEEEEE
Confidence            99999996

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9.1e-45  Score=347.86  Aligned_cols=287  Identities=24%  Similarity=0.389  Sum_probs=246.4

Q ss_pred             EEeEEecCccCcEEEEEEcCCC-CeEEEEeCCCeEEEEeCCCCC-----eeEEeeCCCCcEEEEEECCCCCEEEEEeCCC
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDS-RNLVSASQDGKLIVWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGSFVACGGLDN  119 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~  119 (340)
                      +.+..+++|.+.|++++|+|++ ++|+||+.|++|++||+.+..     ....+.+|...|.+++|+|++++|++|+.|+
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg  452 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG  452 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            4456789999999999999875 689999999999999987543     3457789999999999999999999999999


Q ss_pred             eEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEE---ecCCCCeEEEEEcCC
Q psy15421        120 ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASF---IGHTGDVMSLSLAPD  195 (340)
Q Consensus       120 ~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~  195 (340)
                      +|++||+.++.    ....+.+|...|.++.|++++ .+++++.|++|++||..........   .+|...|.+++|+|+
T Consensus       453 ~v~vwd~~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  528 (694)
T 3dm0_A          453 ELRLWDLAAGV----STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN  528 (694)
T ss_dssp             EEEEEETTTTE----EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred             cEEEEECCCCc----ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence            99999997652    445677999999999998764 6999999999999998754333222   358889999999998


Q ss_pred             C--CEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccce
Q psy15421        196 M--RTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGI  273 (340)
Q Consensus       196 ~--~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i  273 (340)
                      +  ..+++|+.|++|++||++++++...+.+|...|++++|+|++.+|++|+.|+.|++||+++++.+..+...   ..+
T Consensus       529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~~v  605 (694)
T 3dm0_A          529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SVI  605 (694)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---SCE
T ss_pred             CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---CcE
Confidence            6  57999999999999999999999999999999999999999999999999999999999988877655433   358


Q ss_pred             EEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCC-------------------cceEEEEECCCCCEEEEeeCCC
Q psy15421        274 TSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHD-------------------NRVSCLGVTEDGMAVATGSWDS  334 (340)
Q Consensus       274 ~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~-------------------~~i~~~~~s~d~~~l~s~s~D~  334 (340)
                      .+++|+|++.+|+++++ +.|++||..+.+.+..+..|.                   -.+++++|||||++|+|||.||
T Consensus       606 ~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg  684 (694)
T 3dm0_A          606 HALCFSPNRYWLCAATE-HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG  684 (694)
T ss_dssp             EEEEECSSSSEEEEEET-TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEcCCCcEEEEEcC-CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence            99999999998888765 459999999888776554321                   2378999999999999999999


Q ss_pred             cEEecC
Q psy15421        335 FLRIWN  340 (340)
Q Consensus       335 ~i~iW~  340 (340)
                      +|+|||
T Consensus       685 ~i~iW~  690 (694)
T 3dm0_A          685 VIRVWG  690 (694)
T ss_dssp             EEEEEE
T ss_pred             eEEEEe
Confidence            999996

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.2e-44  Score=323.91  Aligned_cols=293  Identities=16%  Similarity=0.193  Sum_probs=256.6

Q ss_pred             eEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC------eeEEeeCCCCcEEEEEECCC----C---CE
Q psy15421         45 MRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN------KVHAIPLRSSWVMTCAYAPS----G---SF  111 (340)
Q Consensus        45 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~~~~~i~~v~~~~~----~---~~  111 (340)
                      ...++.+++|.+.|++++|+|  ++|++++.||+|++||+.+.+      .+..+..|...|.+++|+|+    +   .+
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            456678999999999999998  799999999999999999887      67888899999999999999    9   99


Q ss_pred             EEEEeCCCeEEEEEccCCCCceE-EEEeecCC-----CcceEEEEEc----CCC-e-EEEEeCCCeEEEEECCC------
Q psy15421        112 VACGGLDNICSIYSLKTREGNVR-VSRELPGH-----TGYLSCCRFL----DDN-Q-IVTSSGDMSCALWDIET------  173 (340)
Q Consensus       112 l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~~-----~~~v~~~~~~----~~~-~-l~~~~~d~~v~iwd~~~------  173 (340)
                      |++++.|+.|++|++..+..... ....+..|     ...+.++.|.    +++ . +++++.|+.|++||+.+      
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  163 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  163 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence            99999999999999987653211 14556677     5889999998    654 6 88899999999999988      


Q ss_pred             CceEE-----EEe-------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecC---C---CCCeEEEEEe
Q psy15421        174 GQQCA-----SFI-------GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG---H---ESDINAVTFF  235 (340)
Q Consensus       174 ~~~~~-----~~~-------~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~---h---~~~v~~v~~~  235 (340)
                      ++.+.     .+.       .|...+.+++|+|++ .+++|+.||.|++||+++++.+..+..   |   ..+|.+++|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~  242 (397)
T 1sq9_A          164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  242 (397)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence            66555     664       488899999999999 999999999999999999999999988   9   9999999999


Q ss_pred             cCCCEEEEEeCC---CcEEEEeCcCCcEEEEeecCC-----------cccceEEEEEcCCCcEEEEEeCCCcEEEEeCCC
Q psy15421        236 PNGWAFATGSDD---ATCRLFDIRADQELAMYSHDN-----------IICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       236 ~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~  301 (340)
                      |++.+|++++.|   +.|++||+++.+.+..+....           +...|.+++|+|++++|++|+.|+.|++||..+
T Consensus       243 ~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  322 (397)
T 1sq9_A          243 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  322 (397)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            999999999999   999999999888776664310           345699999999999999999999999999999


Q ss_pred             ceeeeeec------cC---------------CcceEEEEECCCC----------CEEEEeeCCCcEEecC
Q psy15421        302 TERAGILA------GH---------------DNRVSCLGVTEDG----------MAVATGSWDSFLRIWN  340 (340)
Q Consensus       302 ~~~~~~~~------~h---------------~~~i~~~~~s~d~----------~~l~s~s~D~~i~iW~  340 (340)
                      ++.+..+.      +|               ...|++++|+|+|          .+|++|+.||.|++||
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence            99999888      88               9999999999998          7999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.1e-43  Score=332.98  Aligned_cols=283  Identities=27%  Similarity=0.489  Sum_probs=252.5

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      +....+.+|...|.+++|+|+++.|++++.|++|++||. +++....+..|...|.+++|+|++.++++++.|+.+++|+
T Consensus       253 ~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~  331 (577)
T 2ymu_A          253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN  331 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            345678999999999999999999999999999999996 4667788889999999999999999999999999999999


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC  204 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~  204 (340)
                      ....     ....+.+|...+.++.|.+++ .+++++.|+.+++||. +++.+..+.+|...|.+++|+|+++++++++.
T Consensus       332 ~~~~-----~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~  405 (577)
T 2ymu_A          332 RNGQ-----HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD  405 (577)
T ss_dssp             TTSC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred             CCCC-----eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeC
Confidence            7543     234567899999999998765 6888999999999996 56778888999999999999999999999999


Q ss_pred             CCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcE
Q psy15421        205 DASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRL  284 (340)
Q Consensus       205 dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
                      |+.|++||. +++....+.+|..+|++++|+|+++++++++.|+.|++||... +.+..+.  .+...|.+++|+|++++
T Consensus       406 d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~~--~~~~~v~~~~~spd~~~  481 (577)
T 2ymu_A          406 DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLT--GHSSSVRGVAFSPDGQT  481 (577)
T ss_dssp             TSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEEE--CCSSCEEEEEECTTSCE
T ss_pred             CCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEEEc--CCCCCEEEEEEcCCCCE
Confidence            999999995 5677888999999999999999999999999999999999754 3443332  22346999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        285 LLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       285 l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |++++.|++|++|+ .+++.+..+.+|...|++++|+|||++|++++.|++|+|||
T Consensus       482 las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd  536 (577)
T 2ymu_A          482 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN  536 (577)
T ss_dssp             EEEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence            99999999999999 57788889999999999999999999999999999999997

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.2e-43  Score=307.18  Aligned_cols=286  Identities=19%  Similarity=0.325  Sum_probs=250.6

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCee---EEee--CCCCcEEEEEECCCCCEEEEEeCCCeE
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKV---HAIP--LRSSWVMTCAYAPSGSFVACGGLDNIC  121 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~--~~~~~i~~v~~~~~~~~l~~~~~d~~v  121 (340)
                      ......+|.+.|.+++|+|++++|++++ ||.|++||+.+++..   ..+.  .|...|.+++|+|+++++++++.|+.+
T Consensus        43 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  121 (337)
T 1gxr_A           43 RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL  121 (337)
T ss_dssp             EEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEE
T ss_pred             ccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence            3344558999999999999999999998 999999999876533   3333  688899999999999999999999999


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEE
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV  200 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  200 (340)
                      ++|++..+..  .....+..|...+.++.|.+++ .+++++.|+.|++||+++++....+..|...+.+++|+|+++.++
T Consensus       122 ~~~d~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  199 (337)
T 1gxr_A          122 SIWDLAAPTP--RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW  199 (337)
T ss_dssp             EEEECCCC----EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEEECCCCCc--ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEE
Confidence            9999976542  2345567888999999998764 688899999999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcC
Q psy15421        201 SGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSR  280 (340)
Q Consensus       201 sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  280 (340)
                      +++.||.|++||+++++....+. |..++.+++|+|++.++++++.|+.|++||++..+......   +...+.+++|+|
T Consensus       200 ~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~v~~~~~~~  275 (337)
T 1gxr_A          200 TGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL---HESCVLSLKFAY  275 (337)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC---CSSCEEEEEECT
T ss_pred             EEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcC---CccceeEEEECC
Confidence            99999999999999998877775 77889999999999999999999999999999876654333   334699999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        281 SGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       281 ~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++++|++++.|+.|++|+..+++.+.. ..|...|++++|+|++++|++++.||.|++||
T Consensus       276 ~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          276 CGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            999999999999999999988877644 46899999999999999999999999999996

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-43  Score=306.73  Aligned_cols=283  Identities=19%  Similarity=0.361  Sum_probs=252.5

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      ...++|++|.+.|.+++| |++++|++++.||.|++||+.+++....+..|...|.+++|+|++.++++++.|+.+++|+
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~   87 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP   87 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            566889999999999999 9999999999999999999998888888899999999999999999999999999999999


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcC-CCCEEEEEeC
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAP-DMRTFVSGAC  204 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~sg~~  204 (340)
                      +...... .....+.+|...+.++.| +++.+++++.|+.|++||  .++....+..|...+.++++.| ++..+++++.
T Consensus        88 ~~~~~~~-~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  163 (313)
T 3odt_A           88 LFATSGE-DPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASA  163 (313)
T ss_dssp             TTCCTTS-CC-CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred             eeecCCC-CcccchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence            8764322 234456789999999988 567899999999999999  5677888889999999999988 8999999999


Q ss_pred             CCcEEEEECCCCeeeeEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCc
Q psy15421        205 DASAKLWDIRDGSCKQTFPG-HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR  283 (340)
Q Consensus       205 dg~i~~wd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  283 (340)
                      ||.|++||  .++....+.. |...+.+++|+|++. +++++.|+.|++||+++.+.+..+..  +...|++++|+|++ 
T Consensus       164 d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~-  237 (313)
T 3odt_A          164 DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEG--HESFVYCIKLLPNG-  237 (313)
T ss_dssp             TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEECTTS-
T ss_pred             CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhc--CCceEEEEEEecCC-
Confidence            99999999  4556667776 899999999999997 99999999999999998887776642  23469999999999 


Q ss_pred             EEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        284 LLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       284 ~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .|++|+.|+.|++||..+++....+..|...|++++|+|+++ +++++.||.|++||
T Consensus       238 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~  293 (313)
T 3odt_A          238 DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS  293 (313)
T ss_dssp             CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred             CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence            588999999999999999999999999999999999999998 66799999999996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.5e-44  Score=319.90  Aligned_cols=288  Identities=16%  Similarity=0.245  Sum_probs=243.0

Q ss_pred             EEeEEecCccCcEEEEEEcCCC-CeEEEEeCCCeEEEEeCCCCCeeEEee--CCCCcEEEEEECC-CCCEEEEEeCCCeE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDS-RNLVSASQDGKLIVWDSYTTNKVHAIP--LRSSWVMTCAYAP-SGSFVACGGLDNIC  121 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~v~~~~-~~~~l~~~~~d~~v  121 (340)
                      ...+.+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+.  .|...|.+++|+| ++.+|++++.|+.|
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i  143 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT  143 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred             ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence            4566889999999999999999 999999999999999999888776665  5899999999999 78999999999999


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC-EE
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR-TF  199 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~  199 (340)
                      ++|++..  ...........|...+.++.|+++ ..+++++.|+.|++||+ .++.+..+.+|...|.+++|+|+++ ++
T Consensus       144 ~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l  220 (383)
T 3ei3_B          144 TLRDFSG--SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLM  220 (383)
T ss_dssp             EEEETTS--CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEE
T ss_pred             EEEECCC--CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEE
Confidence            9999974  222233333455688999999876 46889999999999999 5778888999999999999999999 89


Q ss_pred             EEEeCCCcEEEEECCC----CeeeeEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCcCCcEEEEee-cCC----c
Q psy15421        200 VSGACDASAKLWDIRD----GSCKQTFPGHESDINAVTFFP-NGWAFATGSDDATCRLFDIRADQELAMYS-HDN----I  269 (340)
Q Consensus       200 ~sg~~dg~i~~wd~~~----~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~----~  269 (340)
                      ++|+.|+.|++||+++    +.+...+ +|...|.+++|+| ++.+|++++.|+.|++||+++.+.+..+. +..    +
T Consensus       221 ~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  299 (383)
T 3ei3_B          221 ATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQH  299 (383)
T ss_dssp             EEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTT
T ss_pred             EEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccc
Confidence            9999999999999987    5566666 6999999999999 99999999999999999998765543332 110    0


Q ss_pred             c----------cceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeecc--CCcceEEEEECCCCCEEEEeeCCCcEE
Q psy15421        270 I----------CGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAG--HDNRVSCLGVTEDGMAVATGSWDSFLR  337 (340)
Q Consensus       270 ~----------~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~--h~~~i~~~~~s~d~~~l~s~s~D~~i~  337 (340)
                      .          ..+..++|+|++++  +|+.|+.|++||..+++.+..+.+  |...+.+++|+|++.+|++|+ |+.|+
T Consensus       300 ~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~  376 (383)
T 3ei3_B          300 LTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNIL  376 (383)
T ss_dssp             SCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEE
T ss_pred             ccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEE
Confidence            1          22445667777766  778999999999999999888877  567788889999999999998 99999


Q ss_pred             ecC
Q psy15421        338 IWN  340 (340)
Q Consensus       338 iW~  340 (340)
                      |||
T Consensus       377 iw~  379 (383)
T 3ei3_B          377 IWN  379 (383)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.5e-44  Score=308.56  Aligned_cols=248  Identities=23%  Similarity=0.377  Sum_probs=221.4

Q ss_pred             CeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeE
Q psy15421         88 NKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSC  166 (340)
Q Consensus        88 ~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v  166 (340)
                      +...++..|...|.+++|+|++.+|++++.|+.|++|++.++.    ....+..|...+.++.|.++ +.+++++.|++|
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV----EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc----eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence            3456788999999999999999999999999999999997652    44567789999999999765 578999999999


Q ss_pred             EEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeeeEecCCCCCeEEEEEec-CCCEEEEE
Q psy15421        167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG-SCKQTFPGHESDINAVTFFP-NGWAFATG  244 (340)
Q Consensus       167 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~-~~~~~~~~h~~~v~~v~~~~-~~~~l~s~  244 (340)
                      ++||+.+++.+..+.+|.+.|.+++|+|+++++++|+.||+|++||++++ .+...+.+|...|.+++|+| ++..|++|
T Consensus        80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg  159 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (304)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999887 55677899999999999999 67899999


Q ss_pred             eCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcC--CCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECC
Q psy15421        245 SDDATCRLFDIRADQELAMYSHDNIICGITSVAFSR--SGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTE  322 (340)
Q Consensus       245 s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~  322 (340)
                      +.|+.|++||++.......+.. .....+..+.|+|  ++++|++|+.|++|++||..+++++..+.+|...|++++|+|
T Consensus       160 s~D~~v~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p  238 (304)
T 2ynn_A          160 CLDRTVKVWSLGQSTPNFTLTT-GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP  238 (304)
T ss_dssp             ETTSEEEEEETTCSSCSEEEEC-CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred             eCCCeEEEEECCCCCccceecc-CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC
Confidence            9999999999987655443322 2234588889976  788999999999999999999999999999999999999999


Q ss_pred             CCCEEEEeeCCCcEEecC
Q psy15421        323 DGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       323 d~~~l~s~s~D~~i~iW~  340 (340)
                      ++.+|+|||.||+|+|||
T Consensus       239 ~~~~l~s~s~Dg~i~iWd  256 (304)
T 2ynn_A          239 TLPIIISGSEDGTLKIWN  256 (304)
T ss_dssp             SSSEEEEEETTSCEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEE
Confidence            999999999999999996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-43  Score=318.68  Aligned_cols=279  Identities=15%  Similarity=0.274  Sum_probs=251.0

Q ss_pred             ccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCce
Q psy15421         54 HLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNV  133 (340)
Q Consensus        54 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~  133 (340)
                      |.+.|.+++|+|++++|++++.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.|+.+++|++.++.   
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---  182 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT---  182 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE---
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc---
Confidence            688999999999999999999999999999 6778888899999999999999999999999999999999997653   


Q ss_pred             EEEEeecCCCcc---------------eEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCE
Q psy15421        134 RVSRELPGHTGY---------------LSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRT  198 (340)
Q Consensus       134 ~~~~~~~~~~~~---------------v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  198 (340)
                       ....+..+...               +.++.|.+++.+++++.++.|.+||+.+++....+..|...+.+++|+|++++
T Consensus       183 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  261 (425)
T 1r5m_A          183 -VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL  261 (425)
T ss_dssp             -EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTE
T ss_pred             -EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCE
Confidence             23344444444               77778888889999999999999999999888888899999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEE
Q psy15421        199 FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAF  278 (340)
Q Consensus       199 ~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  278 (340)
                      +++++.||.|++||+++++....+.+|...|.+++|+|++ ++++++.|+.|++||+++.+.+..+..  +...+.+++|
T Consensus       262 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~  338 (425)
T 1r5m_A          262 LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV--DGVPIFAGRI  338 (425)
T ss_dssp             EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC--TTCCEEEEEE
T ss_pred             EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc--CCccEEEEEE
Confidence            9999999999999999998888999999999999999999 999999999999999998877766543  2346999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEeCCCce--------------------eeeeeccCCc--ceEEEEECCCCCEEEEeeCCCcE
Q psy15421        279 SRSGRLLLAGYDDFNCNVWDSMKTE--------------------RAGILAGHDN--RVSCLGVTEDGMAVATGSWDSFL  336 (340)
Q Consensus       279 s~~~~~l~~g~~d~~i~iw~~~~~~--------------------~~~~~~~h~~--~i~~~~~s~d~~~l~s~s~D~~i  336 (340)
                      +|++++|++|+.|+.|++|+..+.+                    .+..+.+|..  .|++++|+|++++|++++.||.|
T Consensus       339 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  418 (425)
T 1r5m_A          339 SQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEG  418 (425)
T ss_dssp             CTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceE
Confidence            9999999999999999999998877                    7888999977  99999999999999999999999


Q ss_pred             EecC
Q psy15421        337 RIWN  340 (340)
Q Consensus       337 ~iW~  340 (340)
                      ++||
T Consensus       419 ~iw~  422 (425)
T 1r5m_A          419 SVVA  422 (425)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9996

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-44  Score=326.65  Aligned_cols=295  Identities=14%  Similarity=0.204  Sum_probs=242.2

Q ss_pred             eeEEeEEe-cCccCcEEEEEEcC-CCCeEEEEeCCCeEEEEeCCC---CC---eeEEeeCCCCcEEEEEECCCCCEEEEE
Q psy15421         44 QMRTRRTL-RGHLAKIYAMHWGS-DSRNLVSASQDGKLIVWDSYT---TN---KVHAIPLRSSWVMTCAYAPSGSFVACG  115 (340)
Q Consensus        44 ~~~~~~~~-~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~---~~---~~~~~~~~~~~i~~v~~~~~~~~l~~~  115 (340)
                      ..+...++ ++|.+.|++++|+| ++++|++|+.||+|++||+.+   +.   ....+ .|...|.+++|+|++.+|+++
T Consensus        51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~  129 (437)
T 3gre_A           51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVS  129 (437)
T ss_dssp             CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEE
T ss_pred             cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEE
Confidence            33455677 89999999999999 999999999999999999865   32   22233 488999999999999999999


Q ss_pred             eCCCeEEEEEcc---CCCCce----EEEEee--cC--CCcceEEEEE--cCC-CeEEEEeCCCeEEEEECCCCceEEEEe
Q psy15421        116 GLDNICSIYSLK---TREGNV----RVSREL--PG--HTGYLSCCRF--LDD-NQIVTSSGDMSCALWDIETGQQCASFI  181 (340)
Q Consensus       116 ~~d~~v~i~~~~---~~~~~~----~~~~~~--~~--~~~~v~~~~~--~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~  181 (340)
                      +.|+.|++|++.   .+....    .....+  ..  +...+.++.+  .++ ..+++++.|+.|++||+++++.+..+.
T Consensus       130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  209 (437)
T 3gre_A          130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE  209 (437)
T ss_dssp             ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence            999999999985   221110    001111  11  4455666553  333 478899999999999999999999998


Q ss_pred             c--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEec-CCCCCeEEEEEec----CCCEEEEEeCCCcEEEEe
Q psy15421        182 G--HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP-GHESDINAVTFFP----NGWAFATGSDDATCRLFD  254 (340)
Q Consensus       182 ~--~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~-~h~~~v~~v~~~~----~~~~l~s~s~d~~i~iwd  254 (340)
                      .  |.+.|.+++|+|+++++++|+.||.|++||+++++++..+. +|..+|.+++|+|    ++.++++|+.|+.|++||
T Consensus       210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd  289 (437)
T 3gre_A          210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN  289 (437)
T ss_dssp             CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred             cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence            8  89999999999999999999999999999999999988876 7888999996664    678999999999999999


Q ss_pred             CcCCcEEEEeecC------------------------CcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeecc
Q psy15421        255 IRADQELAMYSHD------------------------NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAG  310 (340)
Q Consensus       255 ~~~~~~~~~~~~~------------------------~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~  310 (340)
                      +++++.+..+...                        .+...|++++|+ ++++|++|+.|+.|++||+.+++....+.+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  368 (437)
T 3gre_A          290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVIS  368 (437)
T ss_dssp             TTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred             cCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEec
Confidence            9988766555311                        134458999999 789999999999999999988877666654


Q ss_pred             -------------------------------------CCcceEEEEECCC--CCEEEEeeCCCcEEecC
Q psy15421        311 -------------------------------------HDNRVSCLGVTED--GMAVATGSWDSFLRIWN  340 (340)
Q Consensus       311 -------------------------------------h~~~i~~~~~s~d--~~~l~s~s~D~~i~iW~  340 (340)
                                                           |.+.|++++|+++  +.+|+||+.||.|+||+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          369 PSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             C--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                                                 8899999999998  78999999999999996

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.4e-43  Score=311.58  Aligned_cols=285  Identities=19%  Similarity=0.270  Sum_probs=245.9

Q ss_pred             ecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC--eeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccC
Q psy15421         51 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN--KVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKT  128 (340)
Q Consensus        51 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~  128 (340)
                      +..|.++|++++|+|++++|++++.|+.|++||..+++  .+..+..|...|.+++|+|++++|++++.|+.+++|++..
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            45699999999999999999999999999999998887  7788889999999999999999999999999999999975


Q ss_pred             CCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCce---EEEE-ecCCCCeEEEEEcCCCCEEEEEe
Q psy15421        129 REGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQ---CASF-IGHTGDVMSLSLAPDMRTFVSGA  203 (340)
Q Consensus       129 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~~~sg~  203 (340)
                      +.  ......+..|...+.++.|.+++ .+++++.|+.|++||+..++.   ...+ ..|...+.+++|+|+++++++|+
T Consensus        84 ~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  161 (372)
T 1k8k_C           84 RT--WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS  161 (372)
T ss_dssp             TE--EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             Ce--eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence            43  22334456788999999998764 688899999999999988763   2333 56889999999999999999999


Q ss_pred             CCCcEEEEECC------------------CCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEee
Q psy15421        204 CDASAKLWDIR------------------DGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS  265 (340)
Q Consensus       204 ~dg~i~~wd~~------------------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  265 (340)
                      .||.|++||++                  .++++..+.+|...|.+++|+|++.+|++++.|+.|++||+++.+.+..+.
T Consensus       162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  241 (372)
T 1k8k_C          162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA  241 (372)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred             CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc
Confidence            99999999953                  677888888999999999999999999999999999999999888877664


Q ss_pred             cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCC--ce--------------------------------ee------
Q psy15421        266 HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK--TE--------------------------------RA------  305 (340)
Q Consensus       266 ~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~--~~--------------------------------~~------  305 (340)
                      ..  ...+.+++|+|++++|++| .|+.|++|+..+  ++                                ..      
T Consensus       242 ~~--~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (372)
T 1k8k_C          242 SE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG  318 (372)
T ss_dssp             CS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred             cC--CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence            32  3468999999999999888 999999999876  31                                00      


Q ss_pred             eee-ccCCcceEEEEEC-CCC---CEEEEeeCCCcEEecC
Q psy15421        306 GIL-AGHDNRVSCLGVT-EDG---MAVATGSWDSFLRIWN  340 (340)
Q Consensus       306 ~~~-~~h~~~i~~~~~s-~d~---~~l~s~s~D~~i~iW~  340 (340)
                      ..+ .+|.+.|++++|. ++|   .+|+||+.||.|++||
T Consensus       319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~  358 (372)
T 1k8k_C          319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  358 (372)
T ss_dssp             CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             ccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence            223 4899999999965 777   9999999999999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.4e-43  Score=304.18  Aligned_cols=247  Identities=19%  Similarity=0.344  Sum_probs=226.8

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      ....+.||...|.+++|+++++.+++++.|++|++||+.+++.+..+..+...+.+++|+|++++|++++.++.+++|++
T Consensus        72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~  151 (321)
T 3ow8_A           72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV  151 (321)
T ss_dssp             EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred             eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence            34578999999999999999999999999999999999999999999988888999999999999999999999999999


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                      ..+.    ....+..|...+.++.|++++ .|++++.|+.|++||+++++.+..+.+|...|.+++|+|+++++++|+.|
T Consensus       152 ~~~~----~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~d  227 (321)
T 3ow8_A          152 ESGK----KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD  227 (321)
T ss_dssp             TTCS----EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTT
T ss_pred             CCCc----eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCC
Confidence            7654    234566788889999998765 68889999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEE
Q psy15421        206 ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLL  285 (340)
Q Consensus       206 g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
                      |+|++||++++.+...+.+|...|.+++|+|++.+|++++.|+.|++||+.+.+.+..+.  .+...|.+++|+|++++|
T Consensus       228 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~h~~~v~~v~~s~~g~~l  305 (321)
T 3ow8_A          228 GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF--DHQDQVWGVKYNGNGSKI  305 (321)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEE
T ss_pred             CeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc--CCCCcEEEEEECCCCCEE
Confidence            999999999999999999999999999999999999999999999999999888777653  233469999999999999


Q ss_pred             EEEeCCCcEEEEeC
Q psy15421        286 LAGYDDFNCNVWDS  299 (340)
Q Consensus       286 ~~g~~d~~i~iw~~  299 (340)
                      ++++.|++|++||.
T Consensus       306 ~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          306 VSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEEETTCCEEEEEC
T ss_pred             EEEeCCCeEEEEeC
Confidence            99999999999995

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=8.1e-44  Score=314.52  Aligned_cols=284  Identities=18%  Similarity=0.287  Sum_probs=240.6

Q ss_pred             EEecCccCcEEEEEEcCC----CCeEEEEeCCCeEEEEeCCCCCeeEEeeC-----CCCcEEEEEECCC----CCEEEEE
Q psy15421         49 RTLRGHLAKIYAMHWGSD----SRNLVSASQDGKLIVWDSYTTNKVHAIPL-----RSSWVMTCAYAPS----GSFVACG  115 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~i~~v~~~~~----~~~l~~~  115 (340)
                      ....+|.++|++++|+|+    ...+++++.++.|++||..+++.+..+..     |...|.+++|+|+    +.+|++|
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            345699999999999984    55677778888999999988776655543     5578999999998    6799999


Q ss_pred             eCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC-C-CeEEEEeCCCeEEEEECCCCceEEEE---ecCCCCeEEE
Q psy15421        116 GLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD-D-NQIVTSSGDMSCALWDIETGQQCASF---IGHTGDVMSL  190 (340)
Q Consensus       116 ~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~~v~~~  190 (340)
                      +.|+.|++|++.+++    ....+.+|...+.++.|.+ + ..+++++.|+.|++||+++++....+   ..|...+.++
T Consensus        92 ~~dg~i~v~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  167 (366)
T 3k26_A           92 GSRGIIRIINPITMQ----CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA  167 (366)
T ss_dssp             ETTCEEEEECTTTCC----EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEE
T ss_pred             cCCCEEEEEEchhce----EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEE
Confidence            999999999987653    3455678999999999986 4 46889999999999999999888887   6799999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeeeeEec----------------------------CCCCCeEEEEEecCCCEEE
Q psy15421        191 SLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP----------------------------GHESDINAVTFFPNGWAFA  242 (340)
Q Consensus       191 ~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~----------------------------~h~~~v~~v~~~~~~~~l~  242 (340)
                      +|+|+++++++++.||.|++||+++++....+.                            +|...|.+++|+  +.+++
T Consensus       168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~  245 (366)
T 3k26_A          168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLIL  245 (366)
T ss_dssp             EECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEE
T ss_pred             EECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEE
Confidence            999999999999999999999998876543333                            399999999999  67999


Q ss_pred             EEeCCCcEEEEeCcCCcE--------------EEEeecCCcccceEEEEEcCC--CcEEEEEeCCCcEEEEeCCCceee-
Q psy15421        243 TGSDDATCRLFDIRADQE--------------LAMYSHDNIICGITSVAFSRS--GRLLLAGYDDFNCNVWDSMKTERA-  305 (340)
Q Consensus       243 s~s~d~~i~iwd~~~~~~--------------~~~~~~~~~~~~i~~~~~s~~--~~~l~~g~~d~~i~iw~~~~~~~~-  305 (340)
                      +++.|+.|++||+.+...              +..+.  .+...|++++|+|+  +++|++|+.||.|++||..+++.. 
T Consensus       246 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  323 (366)
T 3k26_A          246 SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD--YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK  323 (366)
T ss_dssp             EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE--CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG
T ss_pred             EEecCCEEEEEeCCCccccccccccCCcchheecccc--ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc
Confidence            999999999999876533              22222  23345889999999  999999999999999999877543 


Q ss_pred             ---eeeccC--CcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        306 ---GILAGH--DNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       306 ---~~~~~h--~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                         ..+.+|  ...|++++|+|++++|++|+.||.|++||
T Consensus       324 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  363 (366)
T 3k26_A          324 AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD  363 (366)
T ss_dssp             CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence               367777  79999999999999999999999999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.1e-43  Score=314.49  Aligned_cols=247  Identities=23%  Similarity=0.408  Sum_probs=225.8

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      ..+++++|.+.|.+++|+|++++|++|+.|++|++||+.+.+.+..+.+|...|.+++|+|++.++++|+.|++|++||+
T Consensus       142 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~  221 (410)
T 1vyh_C          142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV  221 (410)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCC----------
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPD----------  195 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----------  195 (340)
                      .++.    ....+.+|...+.++.+.+++ .+++++.|+.|++||+.+++....+.+|...|.+++|+|+          
T Consensus       222 ~~~~----~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  297 (410)
T 1vyh_C          222 QTGY----CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT  297 (410)
T ss_dssp             TTCC----EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC
T ss_pred             CCCc----EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc
Confidence            7653    345677899999999998765 6888999999999999999998999999999999999996          


Q ss_pred             ----------CCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEee
Q psy15421        196 ----------MRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS  265 (340)
Q Consensus       196 ----------~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  265 (340)
                                +.++++|+.|++|++||++++.++..+.+|...|++++|+|++.+|++|+.|+.|++||+.+.+.+..+.
T Consensus       298 ~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~  377 (410)
T 1vyh_C          298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN  377 (410)
T ss_dssp             SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred             cccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence                      5689999999999999999999999999999999999999999999999999999999998877766553


Q ss_pred             cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeC
Q psy15421        266 HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       266 ~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~  299 (340)
                        .+...|++++|+|++++|++|+.|++|++|+.
T Consensus       378 --~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          378 --AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             --CCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             --CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence              22346999999999999999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9e-43  Score=306.94  Aligned_cols=289  Identities=15%  Similarity=0.221  Sum_probs=239.5

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEE-EEeC---CCeEEEEeCCCCCeeEEe-eCCCCcEEEEEECCC---CCEEEEEeCCC
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLV-SASQ---DGKLIVWDSYTTNKVHAI-PLRSSWVMTCAYAPS---GSFVACGGLDN  119 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~-s~~~---d~~i~iwd~~~~~~~~~~-~~~~~~i~~v~~~~~---~~~l~~~~~d~  119 (340)
                      .+.+++|.+.|.+++|+|+++.++ +++.   |+.|++||+.+++..... ..|...|.+++|+|+   +.+|++|+.|+
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            456789999999999999997655 5554   999999999988765443 367889999999998   69999999999


Q ss_pred             eEEEEEccCCCCceEEEEeecCCCcceEEEEE------cCC-CeEEEEeCCCeEEEEECCCCc-eEEEEecCCC----Ce
Q psy15421        120 ICSIYSLKTREGNVRVSRELPGHTGYLSCCRF------LDD-NQIVTSSGDMSCALWDIETGQ-QCASFIGHTG----DV  187 (340)
Q Consensus       120 ~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~-~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~----~v  187 (340)
                      .|++|++..+..   ....+.+|...+.++.|      +++ ..+++++.|+.|++||+++++ ....+..|.+    .+
T Consensus        91 ~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  167 (357)
T 3i2n_A           91 NLHIWNLEAPEM---PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC  167 (357)
T ss_dssp             CEEEECTTSCSS---CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred             eEEEEeCCCCCc---cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence            999999987542   23456789999999865      333 478999999999999999886 6667766554    78


Q ss_pred             EEEE----EcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEec---CCCEEEEEeCCCcEEEEeCcCCcE
Q psy15421        188 MSLS----LAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFP---NGWAFATGSDDATCRLFDIRADQE  260 (340)
Q Consensus       188 ~~~~----~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~---~~~~l~s~s~d~~i~iwd~~~~~~  260 (340)
                      .+++    |+|+++++++|+.||.|++||+++++.... ..|...|.+++|+|   ++.++++++.||.|++||+++.+.
T Consensus       168 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  246 (357)
T 3i2n_A          168 WTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP  246 (357)
T ss_dssp             EEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET
T ss_pred             EEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc
Confidence            8888    788999999999999999999999887544 56889999999999   899999999999999999986544


Q ss_pred             EEEee---cCCcccceEEEEEcCCCc-EEEEEeCCCcEEEEeCCCc-------------------eeeeeeccCCcceEE
Q psy15421        261 LAMYS---HDNIICGITSVAFSRSGR-LLLAGYDDFNCNVWDSMKT-------------------ERAGILAGHDNRVSC  317 (340)
Q Consensus       261 ~~~~~---~~~~~~~i~~~~~s~~~~-~l~~g~~d~~i~iw~~~~~-------------------~~~~~~~~h~~~i~~  317 (340)
                      ...+.   ...+...|++++|+|+++ +|++|+.|+.|++|+..+.                   +.+..+.+|...|++
T Consensus       247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~  326 (357)
T 3i2n_A          247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS  326 (357)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred             ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence            32221   113345699999999999 8999999999999997643                   456678899999999


Q ss_pred             EEECCCCCEEE-EeeCCCcEEecC
Q psy15421        318 LGVTEDGMAVA-TGSWDSFLRIWN  340 (340)
Q Consensus       318 ~~~s~d~~~l~-s~s~D~~i~iW~  340 (340)
                      ++|+|++.+|+ +|+.|+.|+|||
T Consensus       327 ~~~s~~~~~l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          327 LDWSPDKRGLCVCSSFDQTVRVLI  350 (357)
T ss_dssp             EEECSSSTTEEEEEETTSEEEEEE
T ss_pred             EEEcCCCCeEEEEecCCCcEEEEE
Confidence            99999999998 899999999996

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.8e-42  Score=309.74  Aligned_cols=280  Identities=21%  Similarity=0.424  Sum_probs=243.5

Q ss_pred             ecCccCcEE--EEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeC-CCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         51 LRGHLAKIY--AMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPL-RSSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        51 ~~~h~~~v~--~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      ..+|.+.++  +++|+  +..+++++.|+.|++||..+++....+.. |...|.+++|+|++.+|++|+.|+.|++|++.
T Consensus        87 ~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A           87 APGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             CTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence            347776644  45555  45788999999999999999988777765 78899999999999999999999999999997


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECC-CCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIE-TGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDA  206 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg  206 (340)
                      ++.    ....+.+|...+.++.| ++..+++++.|+.|++||++ .......+.+|.+.+.+++|+|+++++++|+.||
T Consensus       165 ~~~----~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~  239 (401)
T 4aez_A          165 SQT----KLRTMAGHQARVGCLSW-NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN  239 (401)
T ss_dssp             TCC----EEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCe----EEEEecCCCCceEEEEE-CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence            653    44567789999999998 45689999999999999998 4566788889999999999999999999999999


Q ss_pred             cEEEEECCCCeeeeEecCCCCCeEEEEEecCC-CEEEEEe--CCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCc
Q psy15421        207 SAKLWDIRDGSCKQTFPGHESDINAVTFFPNG-WAFATGS--DDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR  283 (340)
Q Consensus       207 ~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  283 (340)
                      .|++||+++++....+.+|...|.+++|+|++ ..+++|+  .|+.|++||+.+++.+..+.+.   ..+.+++|+|+++
T Consensus       240 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~s~~~~  316 (401)
T 4aez_A          240 VVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQVTSLIWSPHSK  316 (401)
T ss_dssp             CEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCEEEEEECSSSS
T ss_pred             eEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEECCCCC
Confidence            99999999999988999999999999999976 5666655  7999999999988888777543   3599999999999


Q ss_pred             EEEE--EeCCCcEEEEeCCCcee--eeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        284 LLLA--GYDDFNCNVWDSMKTER--AGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       284 ~l~~--g~~d~~i~iw~~~~~~~--~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++++  |+.|+.|++|+..+.+.  ...+.+|...|.+++|+|+|.+|++++.||.|++||
T Consensus       317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~  377 (401)
T 4aez_A          317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR  377 (401)
T ss_dssp             EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred             eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            9999  55899999999888544  345779999999999999999999999999999996

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.7e-43  Score=319.67  Aligned_cols=288  Identities=15%  Similarity=0.210  Sum_probs=229.7

Q ss_pred             EEecCccCcEEEEEEcC-CCCeEEEEeCCCeEEEEeCCCCCee--EEeeCCCCcEEEEEECC-CCCEEEEEeCCCeEEEE
Q psy15421         49 RTLRGHLAKIYAMHWGS-DSRNLVSASQDGKLIVWDSYTTNKV--HAIPLRSSWVMTCAYAP-SGSFVACGGLDNICSIY  124 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~i~~v~~~~-~~~~l~~~~~d~~v~i~  124 (340)
                      +...+|...|++|+|+| ++++||+|+.||+|+|||+.+++..  ..+.+|...|.+++|+| ++.+|++|+.|++|++|
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw  192 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ  192 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence            45678899999999999 5678999999999999999877644  34567999999999998 68999999999999999


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC-EEEEE
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR-TFVSG  202 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~sg  202 (340)
                      |+...  ..........+...+.++.|.+++ .+++++.|+.|++||++. +.+..+.+|...|.+++|+|++. ++++|
T Consensus       193 d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~  269 (435)
T 4e54_B          193 DFKGN--ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATA  269 (435)
T ss_dssp             ETTSC--EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred             eccCC--ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEe
Confidence            98643  222222233344556777787654 688899999999999974 56677889999999999999876 67799


Q ss_pred             eCCCcEEEEECCCCeeeeE---ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEee-cCCc---ccceEE
Q psy15421        203 ACDASAKLWDIRDGSCKQT---FPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNI---ICGITS  275 (340)
Q Consensus       203 ~~dg~i~~wd~~~~~~~~~---~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~---~~~i~~  275 (340)
                      +.|++|++||+++.+....   ..+|..+|++++|+|+|.+|++++.|+.|++||+.+......+. +...   ...+..
T Consensus       270 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  349 (435)
T 4e54_B          270 SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIK  349 (435)
T ss_dssp             ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCB
T ss_pred             cCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEE
Confidence            9999999999988765433   35799999999999999999999999999999998766544332 2110   112334


Q ss_pred             EEEcCCCcEEEEEe------------CCCcEEEEeCCCceeeeee-ccCCcceEEE-EECCCCCEEEEeeCCCcEEecC
Q psy15421        276 VAFSRSGRLLLAGY------------DDFNCNVWDSMKTERAGIL-AGHDNRVSCL-GVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       276 ~~~s~~~~~l~~g~------------~d~~i~iw~~~~~~~~~~~-~~h~~~i~~~-~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +.|+|++.++++++            .++.|++||..+++.+..+ .+|...|.++ +|+|+|.+|++|+ |++|+|||
T Consensus       350 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~  427 (435)
T 4e54_B          350 AAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWS  427 (435)
T ss_dssp             CEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECC
T ss_pred             EEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEE
Confidence            56777777776664            3467999999999887765 4788889887 6999999999887 88999997

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-43  Score=318.73  Aligned_cols=287  Identities=13%  Similarity=0.164  Sum_probs=247.1

Q ss_pred             cCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCC----CCeeEEeeCCCCcEEEEEECCC-CCEEEEEeCCCeEEEEEc
Q psy15421         52 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYT----TNKVHAIPLRSSWVMTCAYAPS-GSFVACGGLDNICSIYSL  126 (340)
Q Consensus        52 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~i~~v~~~~~-~~~l~~~~~d~~v~i~~~  126 (340)
                      ..|...|.+++|+|++++|++++.||.|++||+.+    .+.+..+..|...|.+++|+|+ +.+|++++.|+.|++|++
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            36889999999999999999999999999999987    3577788899999999999998 899999999999999999


Q ss_pred             cCCCC-----ceEEEEeecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCceEEEEecC------CCCeEEEEEc
Q psy15421        127 KTREG-----NVRVSRELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQCASFIGH------TGDVMSLSLA  193 (340)
Q Consensus       127 ~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~------~~~v~~~~~~  193 (340)
                      .....     ..........|...+.++.|.++  ..+++++.|+.|++||+++++....+..+      ...+.+++|+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH  223 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence            87641     11112234578889999999876  46888899999999999999888888776      7889999999


Q ss_pred             CCC-CEEEEEeCCC---cEEEEECCCC-eeeeEec-CCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCcCCcEEEEeec
Q psy15421        194 PDM-RTFVSGACDA---SAKLWDIRDG-SCKQTFP-GHESDINAVTFFP-NGWAFATGSDDATCRLFDIRADQELAMYSH  266 (340)
Q Consensus       194 ~~~-~~~~sg~~dg---~i~~wd~~~~-~~~~~~~-~h~~~v~~v~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  266 (340)
                      |++ .++++++.|+   .|++||++++ .....+. +|...|.+++|+| ++.+|++++.|+.|++||+++.+.+..+..
T Consensus       224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~  303 (416)
T 2pm9_A          224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA  303 (416)
T ss_dssp             SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred             CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence            997 6899999999   9999999986 5677787 8999999999999 899999999999999999998887776643


Q ss_pred             CCcccceEEEEEcCCC-cEEEEEeCCCcEEEEeCCCceeeeeec-----------------------------------c
Q psy15421        267 DNIICGITSVAFSRSG-RLLLAGYDDFNCNVWDSMKTERAGILA-----------------------------------G  310 (340)
Q Consensus       267 ~~~~~~i~~~~~s~~~-~~l~~g~~d~~i~iw~~~~~~~~~~~~-----------------------------------~  310 (340)
                        +...|.+++|+|++ .+|++++.|+.|++|++.+........                                   .
T Consensus       304 --~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (416)
T 2pm9_A          304 --RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTW  381 (416)
T ss_dssp             --SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCST
T ss_pred             --CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcc
Confidence              23468899999999 899999999999999987655332221                                   1


Q ss_pred             CCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        311 HDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       311 h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |..++.+++|+|||++|++|+.|++|+||+
T Consensus       382 ~~~~~~~~~~s~dg~~la~~~~d~~v~~w~  411 (416)
T 2pm9_A          382 YGEPSPAAHWAFGGKLVQITPDGKGVSITN  411 (416)
T ss_dssp             TCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred             ccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence            677888999999999999999999999997

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.2e-43  Score=311.99  Aligned_cols=275  Identities=17%  Similarity=0.207  Sum_probs=207.3

Q ss_pred             EEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeC------CCeEEEEEccCCCCceE
Q psy15421         61 MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGL------DNICSIYSLKTREGNVR  134 (340)
Q Consensus        61 ~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~------d~~v~i~~~~~~~~~~~  134 (340)
                      +.+.+++.+ ++++.+.....|++...    ....|...|.+++|+|||++|++|+.      |+.+++|+...+.....
T Consensus        11 ~d~g~~~~~-~~~~g~~~~~~w~~p~~----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~   85 (357)
T 4g56_B           11 VDLGTENLY-FQSNGSSKGSAWGRPVT----APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES   85 (357)
T ss_dssp             ----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG
T ss_pred             CCCCccceE-EecCCCccccccCCCCC----CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee
Confidence            444455544 44555677899986533    23468899999999999999999997      67889998766543322


Q ss_pred             EEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEE----EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q psy15421        135 VSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCA----SFIGHTGDVMSLSLAPDMRTFVSGACDASAKL  210 (340)
Q Consensus       135 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~  210 (340)
                      ......+|...|.++.|.+++.+++++.|++|++||+.+++...    ...+|...|.+++|+|+++++++|+.||+|++
T Consensus        86 ~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i  165 (357)
T 4g56_B           86 LCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV  165 (357)
T ss_dssp             GCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             EecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            23334568888999999999999999999999999998876432    34579999999999999999999999999999


Q ss_pred             EECCCCeeeeEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCC-CcEEEEE
Q psy15421        211 WDIRDGSCKQTFPGHESDINAVTFFPNGW-AFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRS-GRLLLAG  288 (340)
Q Consensus       211 wd~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~g  288 (340)
                      ||+++++++..+++|...|++++|+|++. ++++++.|+.|++||+++.+....+........+++++|+|+ +.+|++|
T Consensus       166 wd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g  245 (357)
T 4g56_B          166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG  245 (357)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEE
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEe
Confidence            99999999999999999999999999874 789999999999999998776655443344456899999997 5689999


Q ss_pred             eCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCC-CEEEEeeCCCcEEecC
Q psy15421        289 YDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDG-MAVATGSWDSFLRIWN  340 (340)
Q Consensus       289 ~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~-~~l~s~s~D~~i~iW~  340 (340)
                      +.|+.|++||..+++....+.+|...|++++|+|++ .+|++||.|++|+|||
T Consensus       246 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd  298 (357)
T 4g56_B          246 DETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLD  298 (357)
T ss_dssp             ESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred             ecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence            999999999999999999999999999999999987 5799999999999997

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.7e-41  Score=306.43  Aligned_cols=273  Identities=22%  Similarity=0.422  Sum_probs=235.2

Q ss_pred             EEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEee--CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEE
Q psy15421         58 IYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP--LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV  135 (340)
Q Consensus        58 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  135 (340)
                      +..|+|+++ +.|+ ++.|++|+|||+.+++....+.  .|...|.+++|+|+|++|++|+.|+.|++|++.++    ..
T Consensus       108 ~~~l~wS~~-n~lA-vgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~----~~  181 (420)
T 4gga_A          108 LNLVDWSSG-NVLA-VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----KR  181 (420)
T ss_dssp             CBCEEECTT-SEEE-EEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EE
T ss_pred             ceeEEECCC-CEEE-EEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC----cE
Confidence            456899975 4555 5569999999999998876655  56778999999999999999999999999999765    34


Q ss_pred             EEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCc-eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy15421        136 SRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQ-QCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIR  214 (340)
Q Consensus       136 ~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~  214 (340)
                      ...+.+|...+.++.+. +..+++++.|+.+.+||..... .+..+.+|...+..+.++|++.++++++.|+.+++||..
T Consensus       182 ~~~~~~h~~~v~~~s~~-~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~  260 (420)
T 4gga_A          182 LRNMTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  260 (420)
T ss_dssp             EEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             EEEEeCCCCceEEEeeC-CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence            56778999999888774 5678899999999999988654 557788999999999999999999999999999999998


Q ss_pred             CCe----eeeEecCCCCCeEEEEEecCCC-EEEE--EeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEE
Q psy15421        215 DGS----CKQTFPGHESDINAVTFFPNGW-AFAT--GSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLA  287 (340)
Q Consensus       215 ~~~----~~~~~~~h~~~v~~v~~~~~~~-~l~s--~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
                      +++    .+.....|...|.+++|+|.+. .+++  |+.|+.|++||+.+++.+..+....   .+.++.|+|+++.+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~~~~~~~~lv~  337 (420)
T 4gga_A          261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSILWSPHYKELIS  337 (420)
T ss_dssp             CCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---CEEEEEEETTTTEEEE
T ss_pred             cccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---ceeeeeecCCCCeEEE
Confidence            765    3456678999999999999754 5554  4579999999999988877665433   4889999999999887


Q ss_pred             Ee--CCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        288 GY--DDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       288 g~--~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++  .|+.|++||..+++++..+.+|.+.|++++|+|||++|+|||.|++|+|||
T Consensus       338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd  392 (420)
T 4gga_A          338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  392 (420)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            65  799999999999999999999999999999999999999999999999997

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=8e-43  Score=309.30  Aligned_cols=281  Identities=14%  Similarity=0.117  Sum_probs=221.5

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCC-------eEEEEeCCCCCe----------eEEeeCCCCcEEEEEECCCCCEEEEE---
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDG-------KLIVWDSYTTNK----------VHAIPLRSSWVMTCAYAPSGSFVACG---  115 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~-------~i~iwd~~~~~~----------~~~~~~~~~~i~~v~~~~~~~~l~~~---  115 (340)
                      -+|++++|+||+++|++||.|.       .|++|++.....          ...+..|...+.++++  ++..+++|   
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~~   92 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCNE   92 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECCC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEECC
Confidence            4899999999999999998754       499999865542          1234567777777655  45566655   


Q ss_pred             --------eCCCeEEEEEccCCCCceEEEEee-----cCCCcceEEEEEcCCCe-EEE--EeCCCeEEEEECCCCceEEE
Q psy15421        116 --------GLDNICSIYSLKTREGNVRVSREL-----PGHTGYLSCCRFLDDNQ-IVT--SSGDMSCALWDIETGQQCAS  179 (340)
Q Consensus       116 --------~~d~~v~i~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-l~~--~~~d~~v~iwd~~~~~~~~~  179 (340)
                              +.|+.+++|++....+........     ..+..++.+++|++++. +++  ++.|++|++||+++++....
T Consensus        93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~  172 (365)
T 4h5i_A           93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE  172 (365)
T ss_dssp             CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred             CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence                    457789999988766554433332     23445688899998875 443  44689999999999988877


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeee--EecCCCCCeEEEEEecCCCEEEEEeCCC----cEEEE
Q psy15421        180 FIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQ--TFPGHESDINAVTFFPNGWAFATGSDDA----TCRLF  253 (340)
Q Consensus       180 ~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~s~d~----~i~iw  253 (340)
                      +. |...|.+++|+|+++++++++. +.+++|+..++....  ...+|...|.+++|+|++.++++++.|+    .+++|
T Consensus       173 ~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~  250 (365)
T 4h5i_A          173 IE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI  250 (365)
T ss_dssp             EE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred             eC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence            65 7788999999999999999875 556677766666543  3457888999999999999999999887    68889


Q ss_pred             eCcCCcEEE--EeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeee-eccCCcceEEEEECCCCCEEEEe
Q psy15421        254 DIRADQELA--MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGI-LAGHDNRVSCLGVTEDGMAVATG  330 (340)
Q Consensus       254 d~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~-~~~h~~~i~~~~~s~d~~~l~s~  330 (340)
                      ++.......  ......+..+|++++|+|+|++||+|+.|++|++||..+++++.. +.+|..+|++|+|||||++||||
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~  330 (365)
T 4h5i_A          251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV  330 (365)
T ss_dssp             EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE
T ss_pred             ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE
Confidence            987654322  112223345699999999999999999999999999999998876 57999999999999999999999


Q ss_pred             eCCCcEEecC
Q psy15421        331 SWDSFLRIWN  340 (340)
Q Consensus       331 s~D~~i~iW~  340 (340)
                      |.|++|||||
T Consensus       331 S~D~tvrvw~  340 (365)
T 4h5i_A          331 SAANTIHIIK  340 (365)
T ss_dssp             ETTSEEEEEE
T ss_pred             eCCCeEEEEE
Confidence            9999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6.4e-42  Score=300.82  Aligned_cols=243  Identities=18%  Similarity=0.216  Sum_probs=206.3

Q ss_pred             CccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEE----eeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccC
Q psy15421         53 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHA----IPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKT  128 (340)
Q Consensus        53 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~  128 (340)
                      .|...|.+++|+|++ .|++|+.||+|+|||+.+++.+..    ..+|...|.+++|+|++++|++|+.|++|++||+.+
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            355789999999985 688999999999999998875543    448999999999999999999999999999999976


Q ss_pred             CCCceEEEEeecCCCcceEEEEEcCCC--eEEEEeCCCeEEEEECCCCceEEEEe--cCCCCeEEEEEcCC-CCEEEEEe
Q psy15421        129 REGNVRVSRELPGHTGYLSCCRFLDDN--QIVTSSGDMSCALWDIETGQQCASFI--GHTGDVMSLSLAPD-MRTFVSGA  203 (340)
Q Consensus       129 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~~sg~  203 (340)
                      +    .....+.+|...|.++.|.+++  .+++++.|++|++||+++++....+.  .+...+.+++|+|+ ++++++|+
T Consensus       159 ~----~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          159 Q----VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             T----EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred             C----cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec
Confidence            5    3556788999999999997654  57899999999999999998877664  35567899999995 56788999


Q ss_pred             CCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCC
Q psy15421        204 CDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG-WAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSG  282 (340)
Q Consensus       204 ~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  282 (340)
                      .||+|++||+++++++..+.+|...|++++|+|++ ++|++|+.|++|++||+.+++......|   ...|++++|+|++
T Consensus       235 ~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H---~~~V~~v~~sp~~  311 (344)
T 4gqb_B          235 ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAH---RDFVRDATWSPLN  311 (344)
T ss_dssp             TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCC---SSCEEEEEECSSS
T ss_pred             cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCC---CCCEEEEEEeCCC
Confidence            99999999999999999999999999999999997 5799999999999999998876554333   4469999999998


Q ss_pred             c-EEEEEeCCCcEEEEeCCCce
Q psy15421        283 R-LLLAGYDDFNCNVWDSMKTE  303 (340)
Q Consensus       283 ~-~l~~g~~d~~i~iw~~~~~~  303 (340)
                      + +|++|+.|++|++|++.+..
T Consensus       312 ~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          312 HSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             TTEEEEEETTSCEEEEECCC--
T ss_pred             CeEEEEEcCCCeEEEEECCCCC
Confidence            6 57789999999999986643

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.1e-44  Score=318.58  Aligned_cols=286  Identities=14%  Similarity=0.186  Sum_probs=228.1

Q ss_pred             EecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCC--CeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTT--NKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      .++.|.++|++++|+|++++|++++.|+.|++||+.++  +.+..+..|...|.+++|+|++++|++++.|+.|++|++.
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            34557789999999999999999999999999999887  6777888999999999999999999999999999999997


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCce---EEEEec-CCCCeEEEEEcCCCCEEEEE
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQ---CASFIG-HTGDVMSLSLAPDMRTFVSG  202 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~---~~~~~~-~~~~v~~~~~~~~~~~~~sg  202 (340)
                      .+. .......+.+|...+.++.|.+++ .+++++.|+.|++||+++++.   ...+.. |...+.+++|+|+++++++|
T Consensus        86 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~  164 (377)
T 3dwl_C           86 PDG-TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG  164 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred             CCC-ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence            654 122344567899999999998764 688999999999999998763   667777 99999999999999999999


Q ss_pred             eCCCcEEEEECC------------------CCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcE----
Q psy15421        203 ACDASAKLWDIR------------------DGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQE----  260 (340)
Q Consensus       203 ~~dg~i~~wd~~------------------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~----  260 (340)
                      +.||.|++||++                  .+++...+ +|...|.+++|+|++++|++++.|+.|++||+.+.+.    
T Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~  243 (377)
T 3dwl_C          165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA  243 (377)
T ss_dssp             ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred             eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence            999999999985                  34556666 8999999999999999999999999999999987765    


Q ss_pred             EEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCce-------------------------------------
Q psy15421        261 LAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTE-------------------------------------  303 (340)
Q Consensus       261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~-------------------------------------  303 (340)
                      +..+.  .+...|.+++|+|++++|++|++++.+ +|+.....                                     
T Consensus       244 ~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (377)
T 3dwl_C          244 LITVK--LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTAL  320 (377)
T ss_dssp             CCCEE--CSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------
T ss_pred             eEeec--CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccc
Confidence            33222  233469999999999999999888766 66543111                                     


Q ss_pred             --eee-------------eeccCCcceEEEEECCCC-C---EEEEeeCCCcEEecC
Q psy15421        304 --RAG-------------ILAGHDNRVSCLGVTEDG-M---AVATGSWDSFLRIWN  340 (340)
Q Consensus       304 --~~~-------------~~~~h~~~i~~~~~s~d~-~---~l~s~s~D~~i~iW~  340 (340)
                        ...             ....|.+.|+++++.+++ .   .|+|||.||.|+|||
T Consensus       321 ~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd  376 (377)
T 3dwl_C          321 RSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT  376 (377)
T ss_dssp             ----------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred             cccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence              000             112399999999976543 3   699999999999997

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=6.5e-41  Score=290.55  Aligned_cols=273  Identities=21%  Similarity=0.415  Sum_probs=232.5

Q ss_pred             EEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEee--CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEE
Q psy15421         58 IYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP--LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV  135 (340)
Q Consensus        58 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  135 (340)
                      +..|+||+++ .|+ ++.|++|+|||+.+++.+..+.  .|...|.+++|+|++++|++|+.|++|++|++.+++    .
T Consensus        28 ~~~l~WS~~~-~lA-vg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~----~  101 (318)
T 4ggc_A           28 LNLVDWSSGN-VLA-VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK----R  101 (318)
T ss_dssp             CBCEEECTTS-EEE-EEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----E
T ss_pred             ceEEEECCCC-EEE-EEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce----e
Confidence            4679999876 554 5679999999999999877665  567789999999999999999999999999997653    4


Q ss_pred             EEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCc-eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy15421        136 SRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQ-QCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIR  214 (340)
Q Consensus       136 ~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~  214 (340)
                      ...+.+|...+.+..+ .+..+++++.++.+++|+..... .+..+.+|...+..+.+.++++++++++.||.|++||++
T Consensus       102 ~~~~~~h~~~~~~~~~-~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  180 (318)
T 4ggc_A          102 LRNMTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  180 (318)
T ss_dssp             EEEEECCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             EEEecCccceEEEeec-CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence            5567789888876655 34578899999999999988764 556778899999999999999999999999999999998


Q ss_pred             CCee----eeEecCCCCCeEEEEEecCCCE---EEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEE
Q psy15421        215 DGSC----KQTFPGHESDINAVTFFPNGWA---FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLA  287 (340)
Q Consensus       215 ~~~~----~~~~~~h~~~v~~v~~~~~~~~---l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
                      +++.    ......|...|.++++.|++..   +++++.++.|++||...........+.   ..+..+.|+|++..+++
T Consensus       181 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~  257 (318)
T 4ggc_A          181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILWSPHYKELIS  257 (318)
T ss_dssp             CBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS---SCEEEEEEETTTTEEEE
T ss_pred             CCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce---eeeeeeeecccccceEE
Confidence            7653    3445678889999999997653   357788999999999887766554433   34889999999998887


Q ss_pred             Ee--CCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        288 GY--DDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       288 g~--~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++  .|+.|++||..+++++..+.+|.+.|++++|+|||++|+|||.|++|+|||
T Consensus       258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  312 (318)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            55  799999999999999999999999999999999999999999999999997

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-43  Score=326.82  Aligned_cols=285  Identities=13%  Similarity=0.118  Sum_probs=225.1

Q ss_pred             ccCcEEEEEEcCCC---------CeEEE-------------------EeCCCeEEEEeCCCCCee----EEeeCCCCcEE
Q psy15421         54 HLAKIYAMHWGSDS---------RNLVS-------------------ASQDGKLIVWDSYTTNKV----HAIPLRSSWVM  101 (340)
Q Consensus        54 h~~~v~~~~~s~~~---------~~l~s-------------------~~~d~~i~iwd~~~~~~~----~~~~~~~~~i~  101 (340)
                      +.+.|++|+|+|++         ++||+                   ++.|++|+|||+.+++..    ..+..|...|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            46788889998876         45554                   568899999998776642    34566778899


Q ss_pred             EEEECCC------CCEEEEEeCCCeEEEEEccCCCCc-------eEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEE
Q psy15421        102 TCAYAPS------GSFVACGGLDNICSIYSLKTREGN-------VRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCAL  168 (340)
Q Consensus       102 ~v~~~~~------~~~l~~~~~d~~v~i~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~i  168 (340)
                      .++|+|+      +.+||+++.|++|++|++..+...       ......+.+|...|.++.|++++.|++|+.||+|++
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~l  291 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAE  291 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEE
Confidence            9999996      579999999999999999765321       011235678999999999988789999999999999


Q ss_pred             EECCCCc-eEEEEecCCCCeEEE--EEcCCC-CEEEEEeCCCcEEEEECCCCeeeeEecCCCC--CeEEEEEecCCCEEE
Q psy15421        169 WDIETGQ-QCASFIGHTGDVMSL--SLAPDM-RTFVSGACDASAKLWDIRDGSCKQTFPGHES--DINAVTFFPNGWAFA  242 (340)
Q Consensus       169 wd~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~  242 (340)
                      ||+++++ ....+.+|...|.++  +|+|++ .+|+||+.|++|++||++++++...+.+|..  .|.+++|+|++..++
T Consensus       292 WD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~  371 (524)
T 2j04_B          292 FDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYI  371 (524)
T ss_dssp             EETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEE
T ss_pred             EECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEE
Confidence            9998764 445678999999999  578887 8999999999999999998887777766653  588999999999999


Q ss_pred             EEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCC---------------------
Q psy15421        243 TGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK---------------------  301 (340)
Q Consensus       243 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~---------------------  301 (340)
                      +++.|++|++||++....+..+.  .+...|++++|+|++++|++|+.|++|++|+...                     
T Consensus       372 s~~~d~tv~lwd~~~~~~~~~l~--gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v  449 (524)
T 2j04_B          372 YSDGASSLRAVPSRAAFAVHPLV--SRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKW  449 (524)
T ss_dssp             EECSSSEEEEEETTCTTCCEEEE--ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEEC
T ss_pred             EeCCCCcEEEEECcccccceeee--cCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEe
Confidence            99999999999999877644432  2334699999999999999999999999987311                     


Q ss_pred             -----------------------ceeeeeeccCCcceEEEEECCCCC---EEEEeeCCCcEEecC
Q psy15421        302 -----------------------TERAGILAGHDNRVSCLGVTEDGM---AVATGSWDSFLRIWN  340 (340)
Q Consensus       302 -----------------------~~~~~~~~~h~~~i~~~~~s~d~~---~l~s~s~D~~i~iW~  340 (340)
                                             +.....+.+|...|++|+|+|++.   .||+|+.||+||||+
T Consensus       450 ~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~  514 (524)
T 2j04_B          450 DYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY  514 (524)
T ss_dssp             BCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred             ccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence                                   111234567889999999999964   999999999999995

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-43  Score=316.33  Aligned_cols=286  Identities=16%  Similarity=0.275  Sum_probs=244.6

Q ss_pred             ccCcEEEEEEcCCCC-eEEEE----------eCCCeEEEEeCCCCCe--eEEeeCCCCcEEEEEECCCCCEEEEEeCCCe
Q psy15421         54 HLAKIYAMHWGSDSR-NLVSA----------SQDGKLIVWDSYTTNK--VHAIPLRSSWVMTCAYAPSGSFVACGGLDNI  120 (340)
Q Consensus        54 h~~~v~~~~~s~~~~-~l~s~----------~~d~~i~iwd~~~~~~--~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~  120 (340)
                      +...|.+++|+|+++ +|+++          +.|+.|++||+.+++.  ......|...|.+++|+|++.+|++++.|+.
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   90 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS   90 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence            445789999999987 89999          8999999999987752  2222357788999999999999999999999


Q ss_pred             EEEEEccCCCCceEEEEeecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCc------eEE---EEecCCCCeEE
Q psy15421        121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQ------QCA---SFIGHTGDVMS  189 (340)
Q Consensus       121 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~------~~~---~~~~~~~~v~~  189 (340)
                      |++|++............+.+|...|.++.|.++  ..+++++.|+.|++||+.+++      ...   ....|...+.+
T Consensus        91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  170 (416)
T 2pm9_A           91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS  170 (416)
T ss_dssp             EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred             EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence            9999997633222355667889999999999864  478899999999999998876      322   23578899999


Q ss_pred             EEEcCC-CCEEEEEeCCCcEEEEECCCCeeeeEecCC------CCCeEEEEEecCC-CEEEEEeCCC---cEEEEeCcCC
Q psy15421        190 LSLAPD-MRTFVSGACDASAKLWDIRDGSCKQTFPGH------ESDINAVTFFPNG-WAFATGSDDA---TCRLFDIRAD  258 (340)
Q Consensus       190 ~~~~~~-~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h------~~~v~~v~~~~~~-~~l~s~s~d~---~i~iwd~~~~  258 (340)
                      ++|+|+ +.++++++.||.|++||+++++.+..+..|      ...|.+++|+|++ .++++++.|+   .|++||+++.
T Consensus       171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~  250 (416)
T 2pm9_A          171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA  250 (416)
T ss_dssp             EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred             EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence            999999 789999999999999999999988888766      7889999999997 6899999999   9999999875


Q ss_pred             -cEEEEeecCCcccceEEEEEcC-CCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCC-CEEEEeeCCCc
Q psy15421        259 -QELAMYSHDNIICGITSVAFSR-SGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDG-MAVATGSWDSF  335 (340)
Q Consensus       259 -~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~-~~l~s~s~D~~  335 (340)
                       .++..+. ..+...|.+++|+| ++++|++|+.|+.|++||..+++.+..+.+|...|++++|+|++ .+|++++.|+.
T Consensus       251 ~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~  329 (416)
T 2pm9_A          251 NTPLQTLN-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK  329 (416)
T ss_dssp             TSCSBCCC-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred             CCCcEEee-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence             3433332 02345699999999 99999999999999999999999999999999999999999999 89999999999


Q ss_pred             EEecC
Q psy15421        336 LRIWN  340 (340)
Q Consensus       336 i~iW~  340 (340)
                      |+|||
T Consensus       330 i~iw~  334 (416)
T 2pm9_A          330 IEVQT  334 (416)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-41  Score=305.59  Aligned_cols=280  Identities=13%  Similarity=0.180  Sum_probs=242.8

Q ss_pred             cCccCcEEEEEEcCCCC-eEEEEeCCCeEEEEeC----CCCC------eeEEeeC----------CCCcEEEEEECCCCC
Q psy15421         52 RGHLAKIYAMHWGSDSR-NLVSASQDGKLIVWDS----YTTN------KVHAIPL----------RSSWVMTCAYAPSGS  110 (340)
Q Consensus        52 ~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~----~~~~------~~~~~~~----------~~~~i~~v~~~~~~~  110 (340)
                      ..|.+.|.+++|+|+++ +|++++.||.|++||+    .+++      ....+..          |...|.+++|+|+++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            45669999999999999 9999999999999999    8877      4444444          577899999999999


Q ss_pred             EEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCC---
Q psy15421        111 FVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGD---  186 (340)
Q Consensus       111 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~---  186 (340)
                      +|++++.|+.|++|+.. +    .....+.+|...+.++.|.+++ .+++++.|+.|++||+.+++....+..+...   
T Consensus       122 ~l~~~~~dg~i~i~~~~-~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  196 (425)
T 1r5m_A          122 SIVTGVENGELRLWNKT-G----ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS  196 (425)
T ss_dssp             EEEEEETTSCEEEEETT-S----CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred             EEEEEeCCCeEEEEeCC-C----CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence            99999999999999932 2    2345677899999999998765 6889999999999999999988888777766   


Q ss_pred             ------------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q psy15421        187 ------------VMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFD  254 (340)
Q Consensus       187 ------------v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd  254 (340)
                                  +.+++|+|++ .+++++.||.|++||+++++....+.+|..+|.+++|+|++.+|++++.|+.|++||
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  275 (425)
T 1r5m_A          197 INAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH  275 (425)
T ss_dssp             ---------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred             eeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence                        8999999975 588999999999999999988889999999999999999999999999999999999


Q ss_pred             CcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCC
Q psy15421        255 IRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDS  334 (340)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~  334 (340)
                      ++..+.+..+.  .+...+.+++|+|++ ++++++.|+.|++||..+++.+..+..|...|.+++|+|++.+|++++.||
T Consensus       276 ~~~~~~~~~~~--~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  352 (425)
T 1r5m_A          276 GGNGNSQNCFY--GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG  352 (425)
T ss_dssp             SSSBSCSEEEC--CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCccceEec--CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC
Confidence            99877666553  233469999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             cEEecC
Q psy15421        335 FLRIWN  340 (340)
Q Consensus       335 ~i~iW~  340 (340)
                      .|++||
T Consensus       353 ~i~i~~  358 (425)
T 1r5m_A          353 QVNVYD  358 (425)
T ss_dssp             CEEEEE
T ss_pred             eEEEEE
Confidence            999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.8e-41  Score=292.29  Aligned_cols=250  Identities=17%  Similarity=0.241  Sum_probs=211.4

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCC--CeeEEeeCCCCcEEEEEECCC--CCEEEEEeCCCeEEEE
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTT--NKVHAIPLRSSWVMTCAYAPS--GSFVACGGLDNICSIY  124 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~i~~v~~~~~--~~~l~~~~~d~~v~i~  124 (340)
                      ..+.+|.+.|++++|+|++++|+||+.|++|+|||+.+.  +.+..+.+|...|.+++|+|+  +++|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            357899999999999999999999999999999998743  567888999999999999864  8999999999999999


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCC---CeEEEEeCCCeEEEEECCCCce--EEEEecCCCCeEEEEEcCC----
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDD---NQIVTSSGDMSCALWDIETGQQ--CASFIGHTGDVMSLSLAPD----  195 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~----  195 (340)
                      ++.++..  .....+.+|...|.++.|.++   ..|++++.|+.|++||++.+..  ...+.+|...+.+++|+|+    
T Consensus        83 d~~~~~~--~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           83 KEENGRW--SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (297)
T ss_dssp             EBSSSCB--CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred             EcCCCce--EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence            9976431  223456789999999999874   4789999999999999987632  3567789999999999997    


Q ss_pred             ---------CCEEEEEeCCCcEEEEECCCCe----eeeEecCCCCCeEEEEEecCC---CEEEEEeCCCcEEEEeCcCCc
Q psy15421        196 ---------MRTFVSGACDASAKLWDIRDGS----CKQTFPGHESDINAVTFFPNG---WAFATGSDDATCRLFDIRADQ  259 (340)
Q Consensus       196 ---------~~~~~sg~~dg~i~~wd~~~~~----~~~~~~~h~~~v~~v~~~~~~---~~l~s~s~d~~i~iwd~~~~~  259 (340)
                               +++|++|+.|++|++||++++.    +...+.+|...|.+++|+|++   .+|++++.|++|++||++...
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~  240 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ  240 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence                     4689999999999999998765    566789999999999999984   899999999999999987642


Q ss_pred             ---EEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCC
Q psy15421        260 ---ELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM  300 (340)
Q Consensus       260 ---~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~  300 (340)
                         ....+....+...|.+++|+|++++|++|+.|++|++|+..
T Consensus       241 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence               11222112334569999999999999999999999999864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.6e-41  Score=292.13  Aligned_cols=248  Identities=23%  Similarity=0.392  Sum_probs=219.2

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      ..++|++|...|.+++|+|++++|+|++.|++|++||+.+++.+..+.+|...|.+++|+|++.++++|+.|++|++|++
T Consensus        57 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~  136 (319)
T 3frx_A           57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI  136 (319)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred             cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCC-------CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEE
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDD-------NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTF  199 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  199 (340)
                      ...     ....+.+|...+..+.+.+.       ..+++++.|+.|++||+++++....+.+|...|.+++|+|+++++
T Consensus       137 ~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l  211 (319)
T 3frx_A          137 KGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI  211 (319)
T ss_dssp             TSC-----EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEE
T ss_pred             CCC-----eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEE
Confidence            532     34567789999999988753       268999999999999999999888899999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecC------Ccccce
Q psy15421        200 VSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHD------NIICGI  273 (340)
Q Consensus       200 ~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~------~~~~~i  273 (340)
                      ++|+.||+|++||+++++++..+..+ .+|.+++|+|++.++++++.+ .+++|++.....+..+...      .....+
T Consensus       212 ~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v  289 (319)
T 3frx_A          212 ASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA  289 (319)
T ss_dssp             EEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcce
Confidence            99999999999999999988888754 689999999999999988754 5999999876555444221      123358


Q ss_pred             EEEEEcCCCcEEEEEeCCCcEEEEeCCC
Q psy15421        274 TSVAFSRSGRLLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       274 ~~~~~s~~~~~l~~g~~d~~i~iw~~~~  301 (340)
                      .+++|+|+|++|++|+.|+.|++|++.+
T Consensus       290 ~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          290 VSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             eEEEECCCCCEEEEeecCceEEEEEEee
Confidence            8999999999999999999999999755

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.7e-42  Score=312.42  Aligned_cols=277  Identities=14%  Similarity=0.257  Sum_probs=235.2

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEE
Q psy15421         57 KIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVS  136 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~  136 (340)
                      .+++++|+|++++|++++.|+.|++||..+.+....+..+ ..+....|+|++++|++|+.|+.|++|++..+    ...
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~  132 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN----LQR  132 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC----EEE
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc----cee
Confidence            3558999999999999999999999999877665555555 44555578999999999999999999998754    234


Q ss_pred             EeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy15421        137 RELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRD  215 (340)
Q Consensus       137 ~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~  215 (340)
                      ..+.+|...|.++.|++++ .|++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++|+.||+|++||+++
T Consensus       133 ~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~  212 (420)
T 3vl1_A          133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT  212 (420)
T ss_dssp             EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC
Confidence            5567899999999998765 688999999999999999999899999999999999999999999999999999999999


Q ss_pred             CeeeeEecC---CCCCeEEEE---------------------EecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCccc
Q psy15421        216 GSCKQTFPG---HESDINAVT---------------------FFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIIC  271 (340)
Q Consensus       216 ~~~~~~~~~---h~~~v~~v~---------------------~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~  271 (340)
                      ++.+..+..   |...+.+++                     |+|++.++++|+.||.|++||+++.+.+..+.. .+..
T Consensus       213 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~  291 (420)
T 3vl1_A          213 GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS-KFTC  291 (420)
T ss_dssp             TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC-TTSS
T ss_pred             CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc-ccCC
Confidence            998888864   344455555                     468899999999999999999998877665532 3345


Q ss_pred             ceEEEEEcCCCc-EEEEEeCCCcEEEEeCCCcee-eeeecc-CCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        272 GITSVAFSRSGR-LLLAGYDDFNCNVWDSMKTER-AGILAG-HDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       272 ~i~~~~~s~~~~-~l~~g~~d~~i~iw~~~~~~~-~~~~~~-h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .|.+++|+|+++ +|++|+.|+.|++||..+++. +..+.+ |...|+++.+ +++.+|++++.|++|++||
T Consensus       292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~  362 (420)
T 3vl1_A          292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI  362 (420)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred             CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence            699999999999 999999999999999988644 666666 6778888855 5788999999999999996

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6.3e-41  Score=300.25  Aligned_cols=289  Identities=18%  Similarity=0.294  Sum_probs=238.7

Q ss_pred             EeEEecCccCcEEEEEEcC-CCCeEEEEeCCCeEEEEeCCCCCeeEEee-------------CCCCcEEEEEECC-CCCE
Q psy15421         47 TRRTLRGHLAKIYAMHWGS-DSRNLVSASQDGKLIVWDSYTTNKVHAIP-------------LRSSWVMTCAYAP-SGSF  111 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~i~~v~~~~-~~~~  111 (340)
                      ....+++|.+.|.+++|+| ++++|++++.||.|++||+.+++....+.             .|...|.+++|+| ++.+
T Consensus        35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  114 (408)
T 4a11_B           35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM  114 (408)
T ss_dssp             TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred             ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence            3467889999999999999 99999999999999999998876554432             4889999999999 7889


Q ss_pred             EEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC----CeEEEEeCCCeEEEEECCCCceEEEEecCCCCe
Q psy15421        112 VACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD----NQIVTSSGDMSCALWDIETGQQCASFIGHTGDV  187 (340)
Q Consensus       112 l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v  187 (340)
                      |++++.|+.+++|++.++.    ....+ .+...+..+.+.+.    ..+++++.|+.|.+||+++++....+..|...+
T Consensus       115 l~s~~~d~~i~iwd~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v  189 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTLQ----TADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEI  189 (408)
T ss_dssp             EEEEETTSEEEEEETTTTE----EEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCE
T ss_pred             EEEEeCCCeEEEeeCCCCc----cceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcE
Confidence            9999999999999997653    22222 25566777777542    268889999999999999999889999999999


Q ss_pred             EEEEEcCCCC-EEEEEeCCCcEEEEECCCCe-eeeEe---------------cCCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy15421        188 MSLSLAPDMR-TFVSGACDASAKLWDIRDGS-CKQTF---------------PGHESDINAVTFFPNGWAFATGSDDATC  250 (340)
Q Consensus       188 ~~~~~~~~~~-~~~sg~~dg~i~~wd~~~~~-~~~~~---------------~~h~~~v~~v~~~~~~~~l~s~s~d~~i  250 (340)
                      .+++|+|++. ++++|+.||.|++||++++. +...+               .+|...|.+++|+|++.++++++.|+.|
T Consensus       190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  269 (408)
T 4a11_B          190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM  269 (408)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeE
Confidence            9999999998 58899999999999998765 33333               5788999999999999999999999999


Q ss_pred             EEEeCcCCcEEEEeecC---CcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEE
Q psy15421        251 RLFDIRADQELAMYSHD---NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAV  327 (340)
Q Consensus       251 ~iwd~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l  327 (340)
                      ++||+.+.+....+...   .....+........+..+++++.++.|++||..+++.+..+.+|.+.|++++|+|++.+|
T Consensus       270 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  349 (408)
T 4a11_B          270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQEL  349 (408)
T ss_dssp             EEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEE
T ss_pred             EEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEE
Confidence            99999876654322111   111112222333445677777889999999999999999999999999999999999999


Q ss_pred             EEeeCCCcEEecC
Q psy15421        328 ATGSWDSFLRIWN  340 (340)
Q Consensus       328 ~s~s~D~~i~iW~  340 (340)
                      ++|+.||.|++||
T Consensus       350 ~s~~~dg~i~iw~  362 (408)
T 4a11_B          350 YSGSRDCNILAWV  362 (408)
T ss_dssp             EEEETTSCEEEEE
T ss_pred             EEECCCCeEEEEe
Confidence            9999999999996

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.1e-41  Score=293.24  Aligned_cols=282  Identities=18%  Similarity=0.298  Sum_probs=244.9

Q ss_pred             ccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCce
Q psy15421         54 HLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNV  133 (340)
Q Consensus        54 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~  133 (340)
                      |.++|.+++|+|||+.++++..++.+.+|+............|...|.+++|+|+++++++++ |+.+++|++..+....
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence            456899999999999999888888777776555444555557999999999999999999999 9999999997654322


Q ss_pred             E-EEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCc--eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q psy15421        134 R-VSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQ--QCASFIGHTGDVMSLSLAPDMRTFVSGACDASAK  209 (340)
Q Consensus       134 ~-~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~  209 (340)
                      . .......|...+.++.|.+++ .+++++.|+.|++||+.+++  ....+..|...+.+++|+|+++++++++.||.|+
T Consensus        87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~  166 (337)
T 1gxr_A           87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA  166 (337)
T ss_dssp             CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence            1 112233788999999998765 68889999999999999877  5567778999999999999999999999999999


Q ss_pred             EEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEe
Q psy15421        210 LWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY  289 (340)
Q Consensus       210 ~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  289 (340)
                      +||+++++....+++|...+.+++|+|++.++++++.|+.|++||+++.+.+..+.+.   ..+.+++|+|++++|++++
T Consensus       167 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~  243 (337)
T 1gxr_A          167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWLAVGM  243 (337)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS---SCEEEEEECTTSSEEEEEE
T ss_pred             EEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC---CceEEEEECCCCCEEEEEc
Confidence            9999999999999999999999999999999999999999999999988877766543   3589999999999999999


Q ss_pred             CCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        290 DDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       290 ~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .|+.|++|+..+.+. ..+..|...|.+++|+|++++|++++.||.|++||
T Consensus       244 ~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~  293 (337)
T 1gxr_A          244 ESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR  293 (337)
T ss_dssp             TTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence            999999999887765 45678999999999999999999999999999996

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4e-40  Score=301.00  Aligned_cols=285  Identities=19%  Similarity=0.263  Sum_probs=247.7

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEEC--CCCCEEEEEeCCCeEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYA--PSGSFVACGGLDNICSI  123 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~--~~~~~l~~~~~d~~v~i  123 (340)
                      +..+++.+|.+.|++++|++++ .+++|+.||+|++||+.+++.+..+..|...|.+++|+  +++.++++|+.|+.+++
T Consensus       153 ~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~v  231 (464)
T 3v7d_B          153 KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV  231 (464)
T ss_dssp             EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEE
T ss_pred             cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEE
Confidence            4567789999999999999988 99999999999999999999999999999999999998  57899999999999999


Q ss_pred             EEccCCCCceE-------------------EEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCC
Q psy15421        124 YSLKTREGNVR-------------------VSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHT  184 (340)
Q Consensus       124 ~~~~~~~~~~~-------------------~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~  184 (340)
                      |++........                   ....+.+|...+.++.. .+..+++++.|+.|++||+.+++.+..+.+|.
T Consensus       232 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  310 (464)
T 3v7d_B          232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT  310 (464)
T ss_dssp             EECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             eeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence            99986542211                   13456778888877643 45689999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEe
Q psy15421        185 GDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMY  264 (340)
Q Consensus       185 ~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  264 (340)
                      ..+.+++|+|+++.+++|+.||.|++||+++++++..+++|...|.+++|+  +.++++++.||.|++||+.+.......
T Consensus       311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~  388 (464)
T 3v7d_B          311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY  388 (464)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee
Confidence            999999999999999999999999999999999999999999999999997  579999999999999999987766555


Q ss_pred             ecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeee-eccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        265 SHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGI-LAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       265 ~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~-~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      .+..   .+..++|+|+++++++|+ |+.|++||..+++.+.. +.+|...|++++|+ ++.++++++.|+.+.+|
T Consensus       389 ~~~~---~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          389 HHTN---LSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             ECTT---CCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             cCCC---CccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence            4332   367789999999999998 89999999999988875 67899999999998 44566677778877665

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.9e-41  Score=297.01  Aligned_cols=277  Identities=12%  Similarity=0.118  Sum_probs=239.3

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC---eeEEeeCCCCcEEEEEECCCCC-EEEEEeCCCeEEEE
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN---KVHAIPLRSSWVMTCAYAPSGS-FVACGGLDNICSIY  124 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~i~~v~~~~~~~-~l~~~~~d~~v~i~  124 (340)
                      ....+|.+.|++++|+|++++|++++.|+.|++||+.+++   .......|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            3456899999999999999999999999999999998776   3455568889999999999999 99999999999999


Q ss_pred             Ec-cCCCCceEEEEeecC--CCcceEEEEEcCCCeEEEEeCCCeEEEEECCC---------CceEEEEecCCCCeEEEEE
Q psy15421        125 SL-KTREGNVRVSRELPG--HTGYLSCCRFLDDNQIVTSSGDMSCALWDIET---------GQQCASFIGHTGDVMSLSL  192 (340)
Q Consensus       125 ~~-~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~---------~~~~~~~~~~~~~v~~~~~  192 (340)
                      ++ ..+.     ...+.+  |...+.++.|.+++.+++++.|+.|++||+++         ++.+..+. |...+.+++|
T Consensus        85 d~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~  158 (342)
T 1yfq_A           85 DLIGSPS-----FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDT  158 (342)
T ss_dssp             CSSSSSS-----EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEE
T ss_pred             EeccCCc-----eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEe
Confidence            98 6543     245667  99999999998766899999999999999987         65555544 8889999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCC-Ce--eeeEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCcCC------cEEE
Q psy15421        193 APDMRTFVSGACDASAKLWDIRD-GS--CKQTFPGHESDINAVTFFP-NGWAFATGSDDATCRLFDIRAD------QELA  262 (340)
Q Consensus       193 ~~~~~~~~sg~~dg~i~~wd~~~-~~--~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~d~~i~iwd~~~~------~~~~  262 (340)
                      +|++  +++++.|+.|++||+++ +.  .......|...+.+++|+| ++.++++++.||.|++|+++..      +...
T Consensus       159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~  236 (342)
T 1yfq_A          159 NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence            9987  89999999999999988 54  2334556888999999999 9999999999999999999765      4444


Q ss_pred             EeecCC-------cccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccC-CcceEEEEECCCCCEEEEeeCCC
Q psy15421        263 MYSHDN-------IICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGH-DNRVSCLGVTEDGMAVATGSWDS  334 (340)
Q Consensus       263 ~~~~~~-------~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h-~~~i~~~~~s~d~~~l~s~s~D~  334 (340)
                      .+....       +...|.+++|+|++++|++|+.||.|++||..+++.+..+.+| ...|++++  |++.+|++|+.||
T Consensus       237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD  314 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred             eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence            443221       1236999999999999999999999999999999999999998 99999999  9999999999999


Q ss_pred             c
Q psy15421        335 F  335 (340)
Q Consensus       335 ~  335 (340)
                      +
T Consensus       315 ~  315 (342)
T 1yfq_A          315 T  315 (342)
T ss_dssp             H
T ss_pred             c
Confidence            8

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.9e-40  Score=288.67  Aligned_cols=246  Identities=18%  Similarity=0.377  Sum_probs=216.7

Q ss_pred             CeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeE
Q psy15421         88 NKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSC  166 (340)
Q Consensus        88 ~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v  166 (340)
                      +....+.+|...|.+++|+|++++|++|+.|++|++|++.++.    ....++.|...+.++.|++++ .+++++.|+.+
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v  121 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN----KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC  121 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC----EEEEEECSSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC----cceEeecCCccEEEEEECCCCCEEEEEeCCCeE
Confidence            4557788999999999999999999999999999999987653    345567899999999998765 68889999999


Q ss_pred             EEEECCCC----ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEE
Q psy15421        167 ALWDIETG----QQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA  242 (340)
Q Consensus       167 ~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~  242 (340)
                      ++|++.++    +....+.+|.+.+.++.|+|++. +++++.|++|++||++++++...+.+|...|.+++|+|++.+++
T Consensus       122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  200 (340)
T 1got_B          122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence            99999865    34566788999999999998765 88999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeec--cCCcceEEEEE
Q psy15421        243 TGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA--GHDNRVSCLGV  320 (340)
Q Consensus       243 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~--~h~~~i~~~~~  320 (340)
                      +|+.|+.|++||+++...+..+.  .+...|++++|+|++++|++|+.|++|++||..+.+.+..+.  .+...|++++|
T Consensus       201 sg~~d~~v~~wd~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~  278 (340)
T 1got_B          201 SGACDASAKLWDVREGMCRQTFT--GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF  278 (340)
T ss_dssp             EEETTSCEEEEETTTCSEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             EEeCCCcEEEEECCCCeeEEEEc--CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEE
Confidence            99999999999999887776653  233469999999999999999999999999998887766554  23457999999


Q ss_pred             CCCCCEEEEeeCCCcEEecC
Q psy15421        321 TEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       321 s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +|+|++|++|+.|+.|++||
T Consensus       279 s~~g~~l~~g~~d~~i~vwd  298 (340)
T 1got_B          279 SKSGRLLLAGYDDFNCNVWD  298 (340)
T ss_dssp             CTTSSEEEEEETTSEEEEEE
T ss_pred             CCCCCEEEEECCCCeEEEEE
Confidence            99999999999999999996

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.7e-40  Score=337.11  Aligned_cols=287  Identities=23%  Similarity=0.396  Sum_probs=259.6

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      +..+.+|.+.|++++|+|+++++++|+.||+|++||..+++.+..+..|...|.+++|+|+++++++++.|+.|++||+.
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~  687 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA  687 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCC---CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDD---NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC  204 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~  204 (340)
                      ++.    ....+.+|...+.++.|.++   ..+++++.|+.|++||+.+++....+.+|.+.|.+++|+|+++.+++|+.
T Consensus       688 ~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~  763 (1249)
T 3sfz_A          688 TGK----LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA  763 (1249)
T ss_dssp             TCC----EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred             CCc----eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence            653    45567789999999999763   25788999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEECCCCeeeeEecC-------------CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCccc
Q psy15421        205 DASAKLWDIRDGSCKQTFPG-------------HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIIC  271 (340)
Q Consensus       205 dg~i~~wd~~~~~~~~~~~~-------------h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~  271 (340)
                      ||+|++||++++.....+..             +...+.+++|+|++..+++++ ++.+.+||..+...+..+.. .+..
T Consensus       764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~-~~~~  841 (1249)
T 3sfz_A          764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHT-GHHS  841 (1249)
T ss_dssp             SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEEC-SSSS
T ss_pred             CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcC-CCCC
Confidence            99999999998876655431             233688999999999999988 78999999998877665532 3345


Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        272 GITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       272 ~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .+.+++|+|+++++++|+.|+.|++|+..++.....+.+|.+.|++++|+|+|.+|++++.|+.|++||
T Consensus       842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~  910 (1249)
T 3sfz_A          842 TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE  910 (1249)
T ss_dssp             CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            689999999999999999999999999999999999999999999999999999999999999999996

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.2e-40  Score=324.31  Aligned_cols=287  Identities=19%  Similarity=0.370  Sum_probs=255.7

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      ..+++|.+|.+.|.+++|+|++++|++++.||.|+|||..+++.+..+..|...|.+++|+|++++|++++.|+.|++|+
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCC-ceEEEEecCCCCeEEEEEcC-CCCEEEEE
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETG-QQCASFIGHTGDVMSLSLAP-DMRTFVSG  202 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~sg  202 (340)
                      +.++.    ....+.+|...+.++.|++++ .+++++.|+.|++||+.++ .....+.+|...+.+++|+| ++..++++
T Consensus        84 ~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  159 (814)
T 3mkq_A           84 YNTGE----KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (814)
T ss_dssp             TTTCC----EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             CCCCc----EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence            97653    345567899999999998775 6889999999999999987 56677888999999999999 88899999


Q ss_pred             eCCCcEEEEECCCCeeeeEecCCC-CCeEEEEEec--CCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEc
Q psy15421        203 ACDASAKLWDIRDGSCKQTFPGHE-SDINAVTFFP--NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS  279 (340)
Q Consensus       203 ~~dg~i~~wd~~~~~~~~~~~~h~-~~v~~v~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  279 (340)
                      +.||.|++||++++.....+..+. ..+.+++|+|  ++.++++++.||.|++||+.+++.+..+..  +...|.+++|+
T Consensus       160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~v~~~~~~  237 (814)
T 3mkq_A          160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG--HMSNVSFAVFH  237 (814)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC--CSSCEEEEEEC
T ss_pred             eCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEc
Confidence            999999999999887777666554 8899999999  999999999999999999998877766542  23469999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCC--EEEEeeCCCcEEec
Q psy15421        280 RSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGM--AVATGSWDSFLRIW  339 (340)
Q Consensus       280 ~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~--~l~s~s~D~~i~iW  339 (340)
                      |++++|++|+.||.|++|+..+++....+..|...|.+++|+|+|.  ++++++ |+.+.+|
T Consensus       238 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~  298 (814)
T 3mkq_A          238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVL  298 (814)
T ss_dssp             SSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEE
Confidence            9999999999999999999999999999999999999999999997  456555 5556666

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.9e-40  Score=299.85  Aligned_cols=279  Identities=20%  Similarity=0.360  Sum_probs=242.6

Q ss_pred             EeEEecCccCcE-EEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         47 TRRTLRGHLAKI-YAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        47 ~~~~~~~h~~~v-~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      ...++++|.+.| .++.+  ++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++ ++++|+.|++|++|+
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd  189 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD  189 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence            456889999885 66665  56799999999999999999999999999999999999999988 999999999999999


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEc--CC-CeEEEEeCCCeEEEEECCCCce-----------------------EEE
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFL--DD-NQIVTSSGDMSCALWDIETGQQ-----------------------CAS  179 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~~l~~~~~d~~v~iwd~~~~~~-----------------------~~~  179 (340)
                      +.++.    ....+.+|...+.++.+.  ++ ..+++++.|+.|++||+++++.                       ...
T Consensus       190 ~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          190 IKKGC----CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             TTTTE----EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             CCCCc----EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            97653    455677899999998886  33 4689999999999999987652                       445


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCc
Q psy15421        180 FIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ  259 (340)
Q Consensus       180 ~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  259 (340)
                      +.+|...+.++  +++++++++|+.||.|++||+++++++..+.+|...|.+++|+|++.++++|+.|+.|++||+++++
T Consensus       266 ~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  343 (464)
T 3v7d_B          266 LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  343 (464)
T ss_dssp             ECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             ccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence            66788888777  5778899999999999999999999999999999999999999999999999999999999999888


Q ss_pred             EEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        260 ELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       260 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      .+..+.  .+...|.++.|+  +++|++|+.|+.|++||..+.+..... .|...+..++|+|++.+|++|+ |+.|++|
T Consensus       344 ~~~~~~--~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iw  417 (464)
T 3v7d_B          344 LMYTLQ--GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIY  417 (464)
T ss_dssp             EEEEEC--CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEE
T ss_pred             EEEEEe--CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEE
Confidence            777664  233468999997  589999999999999999887665544 4777888899999999999999 9999999


Q ss_pred             C
Q psy15421        340 N  340 (340)
Q Consensus       340 ~  340 (340)
                      |
T Consensus       418 d  418 (464)
T 3v7d_B          418 N  418 (464)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=9.3e-40  Score=297.15  Aligned_cols=280  Identities=25%  Similarity=0.431  Sum_probs=250.4

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      +..+++.+|.+.|++++|+  ++.+++|+.||+|++||+.+++.+..+..|...|.++.++  +.++++|+.|+.+++|+
T Consensus       150 ~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd  225 (445)
T 2ovr_B          150 KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWD  225 (445)
T ss_dssp             CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE
T ss_pred             cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEE
Confidence            4557889999999999997  5699999999999999999999999999999999999885  67899999999999999


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                      +.++.    ....+.+|...+.++.+ ++..+++++.|+.|++||+++++.+..+.+|...+.++++  ++..+++|+.|
T Consensus       226 ~~~~~----~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d  298 (445)
T 2ovr_B          226 IETGQ----CLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLD  298 (445)
T ss_dssp             SSSCC----EEEEEECCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETT
T ss_pred             CCCCc----EEEEEcCCcccEEEEEE-CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCC
Confidence            97653    34566789999999988 6678999999999999999999999999999999999999  78899999999


Q ss_pred             CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeec-CCcccceEEEEEcCCCcE
Q psy15421        206 ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSH-DNIICGITSVAFSRSGRL  284 (340)
Q Consensus       206 g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~  284 (340)
                      |.|++||+++++++..+.+|...+.++.++  +.++++|+.||.|++||+++++.+..+.. ..+...|.+++|+  +++
T Consensus       299 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  374 (445)
T 2ovr_B          299 TSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNF  374 (445)
T ss_dssp             SCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSE
T ss_pred             CeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCE
Confidence            999999999999999999999999888775  56999999999999999998887776643 2345579999996  589


Q ss_pred             EEEEeCCCcEEEEeCCCceeeeee-----ccCCcceEEEEECCCCCEEEEeeCCCc----EEecC
Q psy15421        285 LLAGYDDFNCNVWDSMKTERAGIL-----AGHDNRVSCLGVTEDGMAVATGSWDSF----LRIWN  340 (340)
Q Consensus       285 l~~g~~d~~i~iw~~~~~~~~~~~-----~~h~~~i~~~~~s~d~~~l~s~s~D~~----i~iW~  340 (340)
                      |++|+.||.|++||..+++.+..+     .+|.+.|++++|+|++.+|++|+.||+    |.|||
T Consensus       375 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~d  439 (445)
T 2ovr_B          375 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD  439 (445)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEE
Confidence            999999999999999999888777     578899999999999999999999998    99986

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.8e-40  Score=301.38  Aligned_cols=283  Identities=13%  Similarity=0.230  Sum_probs=227.3

Q ss_pred             ccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC-----------eeEEeeCCC------------CcEEEEEECCCC-
Q psy15421         54 HLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN-----------KVHAIPLRS------------SWVMTCAYAPSG-  109 (340)
Q Consensus        54 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~~~------------~~i~~v~~~~~~-  109 (340)
                      |.+.|.+++|+|++++|++|+.||.|+|||+.+++           ....+..|.            ..|.+++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            67899999999999999999999999999998776           467788898            889999999998 


Q ss_pred             -CEEEEEeCCCeEEEEEccCCCCce-----------------------------------EEE-EeecCCCcceEEEEEc
Q psy15421        110 -SFVACGGLDNICSIYSLKTREGNV-----------------------------------RVS-RELPGHTGYLSCCRFL  152 (340)
Q Consensus       110 -~~l~~~~~d~~v~i~~~~~~~~~~-----------------------------------~~~-~~~~~~~~~v~~~~~~  152 (340)
                       .+|++++.|+.|++|++..+....                                   ... ....+|...|.++.|+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             899999999999999987532100                                   000 1135799999999998


Q ss_pred             CCC-eEEEEeCCCeEEEEECCCCc-eEEE-------EecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCee----
Q psy15421        153 DDN-QIVTSSGDMSCALWDIETGQ-QCAS-------FIGHTGDVMSLSLAPDM-RTFVSGACDASAKLWDIRDGSC----  218 (340)
Q Consensus       153 ~~~-~l~~~~~d~~v~iwd~~~~~-~~~~-------~~~~~~~v~~~~~~~~~-~~~~sg~~dg~i~~wd~~~~~~----  218 (340)
                      +++ .++++ .|+.|++||++... ....       +.+|...|.+++|+|++ +++++|+.||.|++||+++++.    
T Consensus       187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  265 (447)
T 3dw8_B          187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH  265 (447)
T ss_dssp             TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred             CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence            776 46666 89999999998443 3332       45799999999999998 8999999999999999999886    


Q ss_pred             eeEecCCCC------------CeEEEEEecCCCEEEEEeCCCcEEEEeCcC-CcEEEEeecCCcc-------------cc
Q psy15421        219 KQTFPGHES------------DINAVTFFPNGWAFATGSDDATCRLFDIRA-DQELAMYSHDNII-------------CG  272 (340)
Q Consensus       219 ~~~~~~h~~------------~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~-------------~~  272 (340)
                      ...+.+|..            .|.+++|+|++.+|++++. +.|++||++. .+.+..+......             ..
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~  344 (447)
T 3dw8_B          266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFD  344 (447)
T ss_dssp             CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGC
T ss_pred             eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccccc
Confidence            678888876            8999999999999999998 9999999986 6555544322110             11


Q ss_pred             eEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeee--------------------------------ccCCcceEEEEE
Q psy15421        273 ITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGIL--------------------------------AGHDNRVSCLGV  320 (340)
Q Consensus       273 i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~--------------------------------~~h~~~i~~~~~  320 (340)
                      +..++|+|++++|++|+.|+.|++||..+++.+...                                ..+...|..++|
T Consensus       345 ~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  424 (447)
T 3dw8_B          345 KFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAW  424 (447)
T ss_dssp             CCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEE
T ss_pred             ceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEE
Confidence            344899999999999999999999999887654311                                123457899999


Q ss_pred             CCCCCEEEEeeCCCcEEec
Q psy15421        321 TEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       321 s~d~~~l~s~s~D~~i~iW  339 (340)
                      +|++.+||+++.|+ +++|
T Consensus       425 ~p~~~~la~~~~~~-~~~~  442 (447)
T 3dw8_B          425 HPKENIIAVATTNN-LYIF  442 (447)
T ss_dssp             CSSSSEEEEECSSC-EEEE
T ss_pred             CCCCCEEEEEecce-eeee
Confidence            99999999999886 5555

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.2e-40  Score=312.31  Aligned_cols=288  Identities=13%  Similarity=0.176  Sum_probs=240.1

Q ss_pred             eEEeEEecCccC---cEEEEEEcCC-CCeEEEEeCCCeEEEEeCCCCCeeEEe-e---CCCCcEEEEEECCCCCEEEEEe
Q psy15421         45 MRTRRTLRGHLA---KIYAMHWGSD-SRNLVSASQDGKLIVWDSYTTNKVHAI-P---LRSSWVMTCAYAPSGSFVACGG  116 (340)
Q Consensus        45 ~~~~~~~~~h~~---~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~-~---~~~~~i~~v~~~~~~~~l~~~~  116 (340)
                      .+....+.+|..   .|.+++|+|+ +++|++++.|+.|++||+.+++.+..+ .   .|...|.++.|+ ++.++++++
T Consensus       193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~  271 (615)
T 1pgu_A          193 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVG  271 (615)
T ss_dssp             BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEE
T ss_pred             cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEc
Confidence            355678899999   9999999999 999999999999999999999988888 6   899999999999 999999999


Q ss_pred             CCCeEEEEEccCCCCceEEEEeecCC----CcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEE
Q psy15421        117 LDNICSIYSLKTREGNVRVSRELPGH----TGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSL  192 (340)
Q Consensus       117 ~d~~v~i~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~  192 (340)
                      .|+.+++|++.++.    ....+..+    ...+..+.+.+++.+++++.|+.|++||+.+++.+..+.+|...|.+++|
T Consensus       272 ~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~  347 (615)
T 1pgu_A          272 ADATIRVWDVTTSK----CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV  347 (615)
T ss_dssp             TTSEEEEEETTTTE----EEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET
T ss_pred             CCCcEEEEECCCCc----EEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe
Confidence            99999999997653    22333333    45666777776778999999999999999988777777666666655555


Q ss_pred             cCC-----------------------------------------------------------------------------
Q psy15421        193 APD-----------------------------------------------------------------------------  195 (340)
Q Consensus       193 ~~~-----------------------------------------------------------------------------  195 (340)
                       |+                                                                             
T Consensus       348 -~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  426 (615)
T 1pgu_A          348 -NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND  426 (615)
T ss_dssp             -TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETT
T ss_pred             -cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCC
Confidence             33                                                                             


Q ss_pred             -----------------------------CCEEEEEeC-CCcEEEEECCCCeee-eEecCCCCCeEEEEEecCCCEEEEE
Q psy15421        196 -----------------------------MRTFVSGAC-DASAKLWDIRDGSCK-QTFPGHESDINAVTFFPNGWAFATG  244 (340)
Q Consensus       196 -----------------------------~~~~~sg~~-dg~i~~wd~~~~~~~-~~~~~h~~~v~~v~~~~~~~~l~s~  244 (340)
                                                   ++++++++. ||.|++||+.++... ..+.+|...|.+++|+|++++|+++
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  506 (615)
T 1pgu_A          427 DDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG  506 (615)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEE
T ss_pred             CceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEc
Confidence                                         334444555 666666666554443 5567799999999999999999999


Q ss_pred             eCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcC----------CCcEEEEEeCCCcEEEEeCCCc-eeeeeeccCCc
Q psy15421        245 SDDATCRLFDIRADQELAMYSHDNIICGITSVAFSR----------SGRLLLAGYDDFNCNVWDSMKT-ERAGILAGHDN  313 (340)
Q Consensus       245 s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~----------~~~~l~~g~~d~~i~iw~~~~~-~~~~~~~~h~~  313 (340)
                      +.|+.|++||+.+.+.+..+.. .+...|++++|+|          ++++|++|+.|+.|++|+..+. +.+..+.+|..
T Consensus       507 ~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~  585 (615)
T 1pgu_A          507 DVMGKILLYDLQSREVKTSRWA-FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD  585 (615)
T ss_dssp             ETTSCEEEEETTTTEEEECCSC-CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT
T ss_pred             CCCCeEEEeeCCCCcceeEeec-CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCcc
Confidence            9999999999998877765431 1345699999999          9999999999999999999887 77888999999


Q ss_pred             ceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        314 RVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       314 ~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .|++++|+|++. |++++.|++|++||
T Consensus       586 ~v~~l~~s~~~~-l~s~~~d~~v~iw~  611 (615)
T 1pgu_A          586 GVNNLLWETPST-LVSSGADACIKRWN  611 (615)
T ss_dssp             CEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred             ceEEEEEcCCCC-eEEecCCceEEEEe
Confidence            999999999999 99999999999996

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.2e-40  Score=300.52  Aligned_cols=271  Identities=24%  Similarity=0.404  Sum_probs=240.9

Q ss_pred             ecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCC
Q psy15421         51 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTRE  130 (340)
Q Consensus        51 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~  130 (340)
                      ..+|...|+++++  +++++++|+.||+|++||..+++.+..+..|...|.++.|  ++.++++|+.|+.|++|++.++.
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~  204 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE  204 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence            3467788999886  7889999999999999999999999999999999999988  78999999999999999997653


Q ss_pred             CceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceE---EEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q psy15421        131 GNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQC---ASFIGHTGDVMSLSLAPDMRTFVSGACDAS  207 (340)
Q Consensus       131 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~  207 (340)
                          ....+.+|...+.++.|. ++.+++++.|+.|++||+.+++..   ..+.+|...+.++++  +++++++|+.||.
T Consensus       205 ----~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~  277 (435)
T 1p22_A          205 ----MLNTLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRT  277 (435)
T ss_dssp             ----EEEEECCCCSCEEEEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred             ----EEEEEcCCCCcEEEEEEc-CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCe
Confidence                445677899999999885 568999999999999999887654   567789999999999  6789999999999


Q ss_pred             EEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEE
Q psy15421        208 AKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLA  287 (340)
Q Consensus       208 i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
                      |++||+++++++..+.+|...|.++.++  +.++++|+.||.|++||+++++.+..+.  .+...|.+++|  ++.+|++
T Consensus       278 i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~--~~~~l~s  351 (435)
T 1p22_A          278 IKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE--GHEELVRCIRF--DNKRIVS  351 (435)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEC--CSSEEEE
T ss_pred             EEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEe--CCcCcEEEEEe--cCCEEEE
Confidence            9999999999999999999999999985  6799999999999999999888777664  23346888888  7899999


Q ss_pred             EeCCCcEEEEeCCCce---------eeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        288 GYDDFNCNVWDSMKTE---------RAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       288 g~~d~~i~iw~~~~~~---------~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |+.||.|++||..+..         .+..+.+|.+.|++++|  ++.+|++|+.||+|++||
T Consensus       352 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd  411 (435)
T 1p22_A          352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  411 (435)
T ss_dssp             EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             EeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence            9999999999986655         67888999999999999  788999999999999997

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-40  Score=288.75  Aligned_cols=252  Identities=19%  Similarity=0.281  Sum_probs=202.4

Q ss_pred             eEEe-cC-ccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCC-------CCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC
Q psy15421         48 RRTL-RG-HLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYT-------TNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD  118 (340)
Q Consensus        48 ~~~~-~~-h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d  118 (340)
                      ...+ .+ |.+.|.+++|+|++++|++++.|++|+|||...       .+.+..+.+|...|.+++|+|++++|++|+.|
T Consensus        49 ~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D  128 (330)
T 2hes_X           49 IDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD  128 (330)
T ss_dssp             EEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETT
T ss_pred             EEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCC
Confidence            3455 45 999999999999999999999999999999853       33456778999999999999999999999999


Q ss_pred             CeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCC--ceEEEEecCCCCeEEEEEcCC
Q psy15421        119 NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETG--QQCASFIGHTGDVMSLSLAPD  195 (340)
Q Consensus       119 ~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~  195 (340)
                      ++|++|++............+.+|...|.++.|++++ .|++++.|++|++||+..+  +.+..+.+|.+.|.+++|+|+
T Consensus       129 ~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~  208 (330)
T 2hes_X          129 KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKT  208 (330)
T ss_dssp             SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCS
T ss_pred             CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCC
Confidence            9999999964433344556778999999999998764 6889999999999999776  567788899999999999998


Q ss_pred             --CCEEEEEeCCCcEEEEECCCC--------eeeeEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCc--EEE
Q psy15421        196 --MRTFVSGACDASAKLWDIRDG--------SCKQTFPG-HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ--ELA  262 (340)
Q Consensus       196 --~~~~~sg~~dg~i~~wd~~~~--------~~~~~~~~-h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~  262 (340)
                        +..+++|+.|++|++||++.+        .+...+.+ |...|.+++|++++ +|++++.||.|++||...++  ...
T Consensus       209 ~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~  287 (330)
T 2hes_X          209 EGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFA  287 (330)
T ss_dssp             SSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             CCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEe
Confidence              678999999999999998654        34455555 89999999999765 89999999999999987653  222


Q ss_pred             EeecCCccc-ceEEEEEcC--CCcEEEEEeCCCcEEEEeCCC
Q psy15421        263 MYSHDNIIC-GITSVAFSR--SGRLLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       263 ~~~~~~~~~-~i~~~~~s~--~~~~l~~g~~d~~i~iw~~~~  301 (340)
                      ... ..+.. .|.+++|+|  ++++|++|+.|++|++|+..+
T Consensus       288 ~~~-~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          288 KRA-LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EES-CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ccc-cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            221 22222 699999999  789999999999999999753

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3e-40  Score=284.60  Aligned_cols=246  Identities=16%  Similarity=0.270  Sum_probs=206.9

Q ss_pred             EEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC---CCeEEEEeCCCeEE
Q psy15421         91 HAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD---DNQIVTSSGDMSCA  167 (340)
Q Consensus        91 ~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~l~~~~~d~~v~  167 (340)
                      ..+.+|...|.+++|+|+|++|++|+.|++|++|++.....  .....+.+|...|.++.|.+   +..|++++.|++|+
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~--~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~   80 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH--KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM   80 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB--CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc--EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence            34668999999999999999999999999999999864322  23466789999999999964   45789999999999


Q ss_pred             EEECCCCc--eEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe--eeeEecCCCCCeEEEEEecC----
Q psy15421        168 LWDIETGQ--QCASFIGHTGDVMSLSLAPD--MRTFVSGACDASAKLWDIRDGS--CKQTFPGHESDINAVTFFPN----  237 (340)
Q Consensus       168 iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~sg~~dg~i~~wd~~~~~--~~~~~~~h~~~v~~v~~~~~----  237 (340)
                      +||+++++  .+..+.+|...|.+++|+|+  +.++++|+.|++|++||++++.  ....+.+|...|++++|+|+    
T Consensus        81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (297)
T ss_dssp             EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence            99998874  45667789999999999997  7899999999999999998763  24567889999999999997    


Q ss_pred             ---------CCEEEEEeCCCcEEEEeCcCCc----EEEEeecCCcccceEEEEEcCCC---cEEEEEeCCCcEEEEeCCC
Q psy15421        238 ---------GWAFATGSDDATCRLFDIRADQ----ELAMYSHDNIICGITSVAFSRSG---RLLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       238 ---------~~~l~s~s~d~~i~iwd~~~~~----~~~~~~~~~~~~~i~~~~~s~~~---~~l~~g~~d~~i~iw~~~~  301 (340)
                               +++|++|+.|+.|++||++..+    ....+  ..+...|.+++|+|++   .+|++|+.|++|++|+..+
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l--~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe--cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence                     5699999999999999998654    22222  3344569999999995   8999999999999999765


Q ss_pred             ce---eeeee--ccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        302 TE---RAGIL--AGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       302 ~~---~~~~~--~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ..   ....+  .+|...|++++|+|+|++|++++.|++|+||+
T Consensus       239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~  282 (297)
T 2pm7_B          239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (297)
T ss_dssp             TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred             CCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            32   12223  57889999999999999999999999999995

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.2e-41  Score=295.91  Aligned_cols=248  Identities=18%  Similarity=0.205  Sum_probs=196.9

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC--eeEEeeCCCCcEEEEEECC--CCCEEEEEeCCCeEEE
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN--KVHAIPLRSSWVMTCAYAP--SGSFVACGGLDNICSI  123 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~~--~~~~l~~~~~d~~v~i  123 (340)
                      +..+.+|.+.|++++|+|++++|+||+.|++|+|||+.+++  .+..+.+|...|.+++|+|  ++++|++|+.|++|++
T Consensus         6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A            6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            34678999999999999999999999999999999998764  3567788888899998875  3788888888888888


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCC--CCEEEE
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPD--MRTFVS  201 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s  201 (340)
                      |++.++.                                           .+....+.+|...|.+++|+|+  +.++++
T Consensus        86 Wd~~~~~-------------------------------------------~~~~~~~~~h~~~V~~v~~~p~~~g~~las  122 (316)
T 3bg1_A           86 WREENGT-------------------------------------------WEKSHEHAGHDSSVNSVCWAPHDYGLILAC  122 (316)
T ss_dssp             ECCSSSC-------------------------------------------CCEEEEECCCSSCCCEEEECCTTTCSCEEE
T ss_pred             EECCCCc-------------------------------------------ceEEEEccCCCCceEEEEECCCCCCcEEEE
Confidence            8764321                                           0122334568888999999998  789999


Q ss_pred             EeCCCcEEEEECCCCe---eeeEecCCCCCeEEEEEecC-----------------CCEEEEEeCCCcEEEEeCcCCc--
Q psy15421        202 GACDASAKLWDIRDGS---CKQTFPGHESDINAVTFFPN-----------------GWAFATGSDDATCRLFDIRADQ--  259 (340)
Q Consensus       202 g~~dg~i~~wd~~~~~---~~~~~~~h~~~v~~v~~~~~-----------------~~~l~s~s~d~~i~iwd~~~~~--  259 (340)
                      |+.|++|++||++.+.   ....+.+|...|.+++|+|+                 +.+|++|+.|+.|++||++...  
T Consensus       123 gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~  202 (316)
T 3bg1_A          123 GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW  202 (316)
T ss_dssp             ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE
T ss_pred             EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc
Confidence            9999999999998753   23556789999999999997                 4689999999999999997542  


Q ss_pred             -EEEEeecCCcccceEEEEEcCCC----cEEEEEeCCCcEEEEeCCCc---e-eeeeeccCCcceEEEEECCCCCEEEEe
Q psy15421        260 -ELAMYSHDNIICGITSVAFSRSG----RLLLAGYDDFNCNVWDSMKT---E-RAGILAGHDNRVSCLGVTEDGMAVATG  330 (340)
Q Consensus       260 -~~~~~~~~~~~~~i~~~~~s~~~----~~l~~g~~d~~i~iw~~~~~---~-~~~~~~~h~~~i~~~~~s~d~~~l~s~  330 (340)
                       .+..+  ..+...|.+++|+|++    ++|++|+.|++|++|+..+.   + ....+.+|.+.|++++|+|+|.+|++|
T Consensus       203 ~~~~~l--~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~  280 (316)
T 3bg1_A          203 KEEQKL--EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS  280 (316)
T ss_dssp             EEEECC--BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE
T ss_pred             ceeeec--ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE
Confidence             23222  3344569999999987    89999999999999997652   1 234567899999999999999999999


Q ss_pred             eCCCcEEecC
Q psy15421        331 SWDSFLRIWN  340 (340)
Q Consensus       331 s~D~~i~iW~  340 (340)
                      +.|++|+||+
T Consensus       281 ~~D~~v~lw~  290 (316)
T 3bg1_A          281 GGDNKVTLWK  290 (316)
T ss_dssp             ESSSCEEEEE
T ss_pred             cCCCeEEEEE
Confidence            9999999995

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.3e-40  Score=291.31  Aligned_cols=291  Identities=16%  Similarity=0.221  Sum_probs=223.8

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC----eeEEeeCCCCcEEEEEECC--CCCEEEEEeCCCeE
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN----KVHAIPLRSSWVMTCAYAP--SGSFVACGGLDNIC  121 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~i~~v~~~~--~~~~l~~~~~d~~v  121 (340)
                      ++.++||.+.|++++|+|++++|++++.||.|++||+.++.    ....+..|...|.+++|+|  ++.+|++++.|+.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            45678999999999999999999999999999999998763    4566788999999999999  69999999999999


Q ss_pred             EEEEccCCCCc-----eEEEEeecCCCcceEEEEEcCC--C-eEEEEeCCCeEEEEECCCCceEEEEe------------
Q psy15421        122 SIYSLKTREGN-----VRVSRELPGHTGYLSCCRFLDD--N-QIVTSSGDMSCALWDIETGQQCASFI------------  181 (340)
Q Consensus       122 ~i~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~d~~v~iwd~~~~~~~~~~~------------  181 (340)
                      ++|++..+...     ......+..|...+.++.|.++  + .+++++.|+.|++||+++++.+..+.            
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            99999875422     2445667789999999999875  4 68899999999999998876543322            


Q ss_pred             -cCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCee--eeEecCCCCCeEEEEEecCC----CEEEEEeCCCcEE
Q psy15421        182 -GHTGDVMSLSLAPD---MRTFVSGACDASAKLWDIRDGSC--KQTFPGHESDINAVTFFPNG----WAFATGSDDATCR  251 (340)
Q Consensus       182 -~~~~~v~~~~~~~~---~~~~~sg~~dg~i~~wd~~~~~~--~~~~~~h~~~v~~v~~~~~~----~~l~s~s~d~~i~  251 (340)
                       .|...+.+++|+|+   +..+++++.|+.+.+|+...+..  ...+.+|..+|.+++|+|++    .+|++|+.||.|+
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~  243 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR  243 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence             57788999999997   89999999999999998887764  66788999999999999998    8999999999999


Q ss_pred             EEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEE----eCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEE
Q psy15421        252 LFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAG----YDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAV  327 (340)
Q Consensus       252 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g----~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l  327 (340)
                      +||++.........  ..........+++....++.+    .....+.+|+....+.+..+.+|...|++++|+|++++|
T Consensus       244 iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l  321 (351)
T 3f3f_A          244 IFKITEKLSPLASE--ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTIL  321 (351)
T ss_dssp             EEEEEECC-----------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCE
T ss_pred             EEeCCCCcCccccC--CcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEE
Confidence            99998654332221  111123333444444444443    334456667766777888899999999999999999999


Q ss_pred             EEeeCCCcEEecC
Q psy15421        328 ATGSWDSFLRIWN  340 (340)
Q Consensus       328 ~s~s~D~~i~iW~  340 (340)
                      ++|+.||.|+|||
T Consensus       322 ~s~~~dg~v~iw~  334 (351)
T 3f3f_A          322 SSAGDDGKVRLWK  334 (351)
T ss_dssp             EEEETTSCEEEEE
T ss_pred             EEecCCCcEEEEe
Confidence            9999999999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.3e-40  Score=290.40  Aligned_cols=251  Identities=20%  Similarity=0.311  Sum_probs=210.9

Q ss_pred             eeEEeeCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeE
Q psy15421         89 KVHAIPLRSS-WVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSC  166 (340)
Q Consensus        89 ~~~~~~~~~~-~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v  166 (340)
                      .+..+++|.. .|..++|+|++++|++|+.|++|++|++..+... .......+|...|.++.|++++ .|++++.|+++
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v   85 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI-CKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT   85 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE-EEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce-eeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence            4567788877 8999999999999999999999999998754211 1122346899999999998765 68899999999


Q ss_pred             EEEECCCCc--eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---eeeEecCCCCCeEEEEEecCCCEE
Q psy15421        167 ALWDIETGQ--QCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS---CKQTFPGHESDINAVTFFPNGWAF  241 (340)
Q Consensus       167 ~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~---~~~~~~~h~~~v~~v~~~~~~~~l  241 (340)
                      ++||+..+.  .+..+.+|...|.+++|+|++++|++|+.|++|++||++++.   ++..+.+|...|.+++|+|++.+|
T Consensus        86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  165 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL  165 (345)
T ss_dssp             EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCE
T ss_pred             EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEE
Confidence            999998764  567788999999999999999999999999999999998763   456788999999999999999999


Q ss_pred             EEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc---------------eeee
Q psy15421        242 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT---------------ERAG  306 (340)
Q Consensus       242 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~---------------~~~~  306 (340)
                      ++|+.|+.|++||.+..+.........+...|++++|+|++++|++|+.|++|++|+....               +++.
T Consensus       166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~  245 (345)
T 3fm0_A          166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC  245 (345)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE
T ss_pred             EEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE
Confidence            9999999999999987654332223344557999999999999999999999999985321               2333


Q ss_pred             eecc-CCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        307 ILAG-HDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       307 ~~~~-h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .+.+ |...|++++|+|++..|++++.|+.|++|+
T Consensus       246 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~  280 (345)
T 3fm0_A          246 TLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ  280 (345)
T ss_dssp             EECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             EecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence            4444 889999999999999999999999999995

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.2e-40  Score=300.29  Aligned_cols=283  Identities=18%  Similarity=0.215  Sum_probs=234.4

Q ss_pred             ecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCC
Q psy15421         51 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTRE  130 (340)
Q Consensus        51 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~  130 (340)
                      +.+| ..+....|++++++|++++.||.|++||+.+++....+..|...|.+++|+|++++|++++.|+.|++|++.++.
T Consensus        94 ~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  172 (420)
T 3vl1_A           94 LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS  172 (420)
T ss_dssp             SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence            3444 445555789999999999999999999999888888888999999999999999999999999999999998654


Q ss_pred             CceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEec---CCCCeE------------------
Q psy15421        131 GNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIG---HTGDVM------------------  188 (340)
Q Consensus       131 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~------------------  188 (340)
                          ....+.+|...|.++.|++++ .+++++.|+.|++||+++++....+..   +...+.                  
T Consensus       173 ----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  248 (420)
T 3vl1_A          173 ----NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS  248 (420)
T ss_dssp             ----CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred             ----CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence                234567899999999998764 688999999999999999988888764   333444                  


Q ss_pred             ---EEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEec-CCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCcCCcE-EE
Q psy15421        189 ---SLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP-GHESDINAVTFFPNGW-AFATGSDDATCRLFDIRADQE-LA  262 (340)
Q Consensus       189 ---~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~-~h~~~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~~~-~~  262 (340)
                         +++|+|+++++++|+.||.|++||+++++....+. +|...|.+++|+|++. ++++|+.||.|++||+++.+. +.
T Consensus       249 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~  328 (420)
T 3vl1_A          249 KKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG  328 (420)
T ss_dssp             CCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE
T ss_pred             cccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh
Confidence               45557899999999999999999999988766654 5888999999999998 999999999999999987643 34


Q ss_pred             EeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc---------eeeeeeccCCcceEEEEECCCCC---EEEEe
Q psy15421        263 MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT---------ERAGILAGHDNRVSCLGVTEDGM---AVATG  330 (340)
Q Consensus       263 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~---------~~~~~~~~h~~~i~~~~~s~d~~---~l~s~  330 (340)
                      .+.. .+...+.++.+ |++++|++|+.|+.|++|+....         .....+.+|.+.|.+++|+|++.   .|+++
T Consensus       329 ~~~~-~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~  406 (420)
T 3vl1_A          329 EFLI-NEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEV  406 (420)
T ss_dssp             EEEE-STTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEE
T ss_pred             hhhc-cCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEE
Confidence            3332 12235777754 57899999999999999997653         22334668899999999999999   78888


Q ss_pred             eCCCcEEecC
Q psy15421        331 SWDSFLRIWN  340 (340)
Q Consensus       331 s~D~~i~iW~  340 (340)
                      +.+|.+++|+
T Consensus       407 g~~g~~~~~~  416 (420)
T 3vl1_A          407 GKNNFCALYN  416 (420)
T ss_dssp             ETTTEEEEEE
T ss_pred             cCCceEEEEe
Confidence            8899999995

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-40  Score=322.59  Aligned_cols=165  Identities=13%  Similarity=0.116  Sum_probs=141.0

Q ss_pred             cCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCC
Q psy15421         52 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREG  131 (340)
Q Consensus        52 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~  131 (340)
                      ..|...|.+++|+| +++|++++.|++|++||+.+++.+..+. |...|.+++|+|+++++++|+.|+.|++||+..+..
T Consensus        55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~  132 (902)
T 2oaj_A           55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL  132 (902)
T ss_dssp             CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred             cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            35889999999999 8899999999999999999999888876 567899999999999999999999999999976432


Q ss_pred             ceEEE-------EeecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCceEEEEecC------------------C
Q psy15421        132 NVRVS-------RELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQCASFIGH------------------T  184 (340)
Q Consensus       132 ~~~~~-------~~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~------------------~  184 (340)
                      .....       ..+.+|...|.++.|+++  +.+++++.|+.| +||+++++....+..|                  .
T Consensus       133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~  211 (902)
T 2oaj_A          133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRT  211 (902)
T ss_dssp             EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred             ccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccC
Confidence            10000       234678899999999875  478889999999 9999999888877665                  4


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeee
Q psy15421        185 GDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCK  219 (340)
Q Consensus       185 ~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~  219 (340)
                      ..|.+++|+|++++|++|+.||+|++||+++++++
T Consensus       212 ~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~  246 (902)
T 2oaj_A          212 PKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI  246 (902)
T ss_dssp             CCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence            67999999999999999999999999999776543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.7e-40  Score=287.42  Aligned_cols=251  Identities=21%  Similarity=0.313  Sum_probs=208.9

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      ..+.+.+|...|.+++|+|++.+++|++.|++|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++|++
T Consensus        68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~  147 (343)
T 2xzm_R           68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI  147 (343)
T ss_dssp             EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred             ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCC-----------CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCC
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDD-----------NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPD  195 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  195 (340)
                      ...  .........+|...+.++.|.+.           ..+++++.|+.|++||. ..+....+.+|...|.+++|+|+
T Consensus       148 ~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~  224 (343)
T 2xzm_R          148 LGE--CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPN  224 (343)
T ss_dssp             SSC--EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTT
T ss_pred             cCC--ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCC
Confidence            632  11111223478889999999765           36899999999999995 45667788899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCC-eeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEE--Eeec------
Q psy15421        196 MRTFVSGACDASAKLWDIRDG-SCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELA--MYSH------  266 (340)
Q Consensus       196 ~~~~~sg~~dg~i~~wd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~------  266 (340)
                      +++|++|+.||.|++||++.. .....+. +...|.+++|+|++.+++++ .|+.|++||+.+.+...  .+..      
T Consensus       225 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~  302 (343)
T 2xzm_R          225 GKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKA  302 (343)
T ss_dssp             SSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGB
T ss_pred             CCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhh
Confidence            999999999999999999543 3344443 55679999999999877655 58889999997654432  2211      


Q ss_pred             ---CCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc
Q psy15421        267 ---DNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT  302 (340)
Q Consensus       267 ---~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~  302 (340)
                         ..+...+.+++|+|++++|++|+.||.|++|+..++
T Consensus       303 ~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          303 EGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             TTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             hhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence               123345899999999999999999999999997654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.1e-39  Score=331.15  Aligned_cols=291  Identities=24%  Similarity=0.387  Sum_probs=254.8

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECC--CCCEEEEEeCCCeEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP--SGSFVACGGLDNICSI  123 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~--~~~~l~~~~~d~~v~i  123 (340)
                      ....++.+|.+.|.+++|+|++++|++++.|++|++||+.+++.+..+..|...|.+++|+|  ++.++++|+.|+.|++
T Consensus       648 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~v  727 (1249)
T 3sfz_A          648 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL  727 (1249)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEE
T ss_pred             CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEE
Confidence            34567899999999999999999999999999999999999999999999999999999999  5668999999999999


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEE----------------------
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASF----------------------  180 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~----------------------  180 (340)
                      |++.++.    ....+.+|...|.++.|++++ .+++++.|+.|++||+.+++....+                      
T Consensus       728 wd~~~~~----~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  803 (1249)
T 3sfz_A          728 WDLNQKE----CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC  803 (1249)
T ss_dssp             EETTSSS----EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCC
T ss_pred             EECCCcc----hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEE
Confidence            9997653    445677899999999998765 6889999999999999776543322                      


Q ss_pred             ---------------------------------ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCC
Q psy15421        181 ---------------------------------IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHES  227 (340)
Q Consensus       181 ---------------------------------~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~  227 (340)
                                                       .+|...+.+++|+|++..+++++.||.|++||+.++.....+.+|..
T Consensus       804 ~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~  883 (1249)
T 3sfz_A          804 CSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS  883 (1249)
T ss_dssp             CCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS
T ss_pred             EEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc
Confidence                                             15778899999999999999999999999999999999999999999


Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcE-----------------------------EEEee-cC-----Ccccc
Q psy15421        228 DINAVTFFPNGWAFATGSDDATCRLFDIRADQE-----------------------------LAMYS-HD-----NIICG  272 (340)
Q Consensus       228 ~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~-----------------------------~~~~~-~~-----~~~~~  272 (340)
                      .|.+++|+|++.++++++.|+.|++||+.....                             ..... ..     .....
T Consensus       884 ~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  963 (1249)
T 3sfz_A          884 WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ  963 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSC
T ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCc
Confidence            999999999999999999999999999653100                             00000 00     01235


Q ss_pred             eEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        273 ITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       273 i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +.+++|+|+++++++|+.||.|++|+..+++....+.+|...|++++|+|+|++|++++.||.|++||
T Consensus       964 i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A          964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred             EEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            88999999999999999999999999999999899999999999999999999999999999999996

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6e-39  Score=291.81  Aligned_cols=275  Identities=26%  Similarity=0.471  Sum_probs=243.0

Q ss_pred             EeEEecCccCcE-EEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         47 TRRTLRGHLAKI-YAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        47 ~~~~~~~h~~~v-~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      ..+.+.+|.+.| .+  +++++++|++|+.||+|++||+.+++.+..+..|...|.++.|+  +.++++|+.|+.|++|+
T Consensus       110 ~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd  185 (445)
T 2ovr_B          110 SPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN  185 (445)
T ss_dssp             CCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred             eeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence            346789999875 55  44568899999999999999999999999999999999999997  67999999999999999


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                      +.+++    ....+.+|...+.++.+. ++.+++++.|+.|++||+.+++....+.+|...+.++++  +++.+++|+.|
T Consensus       186 ~~~~~----~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d  258 (445)
T 2ovr_B          186 AETGE----CIHTLYGHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYD  258 (445)
T ss_dssp             TTTTE----EEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETT
T ss_pred             CCcCc----EEEEECCCCCcEEEEEec-CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCC
Confidence            97652    456678899999998884 567999999999999999999999999999999999999  67899999999


Q ss_pred             CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEE
Q psy15421        206 ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLL  285 (340)
Q Consensus       206 g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
                      |.|++||+++++++..+.+|...|.+++|  ++.++++|+.|+.|++||+++++.+..+..  +...+.++.+  +++++
T Consensus       259 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~--~~~~l  332 (445)
T 2ovr_B          259 FMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG--HQSLTSGMEL--KDNIL  332 (445)
T ss_dssp             SCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC--CCSCEEEEEE--ETTEE
T ss_pred             CEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC--CcccEEEEEE--eCCEE
Confidence            99999999999999999999999999999  788999999999999999998887766542  2334666665  56799


Q ss_pred             EEEeCCCcEEEEeCCCceeeeeecc---CCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        286 LAGYDDFNCNVWDSMKTERAGILAG---HDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       286 ~~g~~d~~i~iw~~~~~~~~~~~~~---h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++|+.|+.|++||..+++.+..+.+   |...|++++|+  +.+|++|+.||.|++||
T Consensus       333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd  388 (445)
T 2ovr_B          333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD  388 (445)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence            9999999999999999988888876   88999999996  57999999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.7e-39  Score=283.95  Aligned_cols=246  Identities=19%  Similarity=0.357  Sum_probs=216.5

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCC------CeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCe
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTT------NKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI  120 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~  120 (340)
                      ..+.+..|...|.+++|+|++..+++++.|+.+++|++...      .....+..|...|.+++|+|++.+|++++.|++
T Consensus        98 ~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~  177 (354)
T 2pbi_B           98 KEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT  177 (354)
T ss_dssp             EEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             cceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCc
Confidence            44667789999999999999999999999999999998643      234567789999999999999999999999999


Q ss_pred             EEEEEccCCCCceEEEEeecCCCcceEEEEEcC---CCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC
Q psy15421        121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD---DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR  197 (340)
Q Consensus       121 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  197 (340)
                      |++||+.++.    ....+.+|...+.++.+.+   +..+++++.|+.|++||+++++.+..+.+|...|.+++|+|++.
T Consensus       178 v~lwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~  253 (354)
T 2pbi_B          178 CALWDVESGQ----LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD  253 (354)
T ss_dssp             EEEEETTTCC----EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred             EEEEeCCCCe----EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC
Confidence            9999997653    4456778999999888864   25799999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCeeeeEecCC--CCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEE
Q psy15421        198 TFVSGACDASAKLWDIRDGSCKQTFPGH--ESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITS  275 (340)
Q Consensus       198 ~~~sg~~dg~i~~wd~~~~~~~~~~~~h--~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~  275 (340)
                      ++++|+.|++|++||++.+..+..+..+  ...+.+++|+|++.++++|+.|+.|++||+.+++.+..+.  .+...|++
T Consensus       254 ~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~--~h~~~v~~  331 (354)
T 2pbi_B          254 AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF--GHENRVST  331 (354)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC--CCSSCEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE--CCCCcEEE
Confidence            9999999999999999998877666543  3578999999999999999999999999998887766553  33456999


Q ss_pred             EEEcCCCcEEEEEeCCCcEEEEe
Q psy15421        276 VAFSRSGRLLLAGYDDFNCNVWD  298 (340)
Q Consensus       276 ~~~s~~~~~l~~g~~d~~i~iw~  298 (340)
                      ++|+|++++|++|+.|++|++|+
T Consensus       332 l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          332 LRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999999996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.1e-38  Score=276.58  Aligned_cols=247  Identities=26%  Similarity=0.482  Sum_probs=219.9

Q ss_pred             eeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEE
Q psy15421         89 KVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCA  167 (340)
Q Consensus        89 ~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~  167 (340)
                      ...++.+|...|.+++|+|++++|++++.|+.+++|++..+.    ....+.+|...+.++.|.+++ .+++++.|+.|+
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   90 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK   90 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----cchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence            456778999999999999999999999999999999987543    345677899999999998764 688999999999


Q ss_pred             EEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCC
Q psy15421        168 LWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDD  247 (340)
Q Consensus       168 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d  247 (340)
                      +||+++++.+..+.+|...+.+++|+|+++++++|+.||.|++||++++++...+..|..+|.+++|+|++.++++++.|
T Consensus        91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
T 4ery_A           91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  170 (312)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEE---EEECCCC
Q psy15421        248 ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSC---LGVTEDG  324 (340)
Q Consensus       248 ~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~---~~~s~d~  324 (340)
                      +.|++||+++.+.+..+.. .....+..++|+|++++|++++.|+.|++||..+++.+..+.+|...+.+   ....+++
T Consensus       171 ~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
T 4ery_A          171 GLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG  249 (312)
T ss_dssp             SCEEEEETTTCCEEEEECC-SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSS
T ss_pred             CcEEEEECCCCceeeEEec-cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCC
Confidence            9999999998877665432 22345889999999999999999999999999999999989888765433   3334788


Q ss_pred             CEEEEeeCCCcEEecC
Q psy15421        325 MAVATGSWDSFLRIWN  340 (340)
Q Consensus       325 ~~l~s~s~D~~i~iW~  340 (340)
                      .+|++|+.||.|++||
T Consensus       250 ~~l~sg~~dg~i~vwd  265 (312)
T 4ery_A          250 KWIVSGSEDNLVYIWN  265 (312)
T ss_dssp             CEEEECCTTSCEEEEE
T ss_pred             cEEEEECCCCEEEEEE
Confidence            9999999999999996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.8e-39  Score=302.66  Aligned_cols=283  Identities=18%  Similarity=0.269  Sum_probs=250.1

Q ss_pred             EEeEEecCccCc-EEEEEEcC--CCCeEEEEeCCCeEEEEeCCCC--------CeeEEeeCCCCcEEEEEECCCCCEEEE
Q psy15421         46 RTRRTLRGHLAK-IYAMHWGS--DSRNLVSASQDGKLIVWDSYTT--------NKVHAIPLRSSWVMTCAYAPSGSFVAC  114 (340)
Q Consensus        46 ~~~~~~~~h~~~-v~~~~~s~--~~~~l~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~i~~v~~~~~~~~l~~  114 (340)
                      ...+.+.+|.+. |.+++|+|  ++++|++++.||+|++||+.++        +....+..|...|.+++|+|++++|++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            355788999999 99999999  9999999999999999999744        566778889999999999999999999


Q ss_pred             EeCC----CeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC--eEEEEeCCCeEEEEECCCCceEEEEecCCC---
Q psy15421        115 GGLD----NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN--QIVTSSGDMSCALWDIETGQQCASFIGHTG---  185 (340)
Q Consensus       115 ~~~d----~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~---  185 (340)
                      ++.+    +.+.+|+.  +.    ....+.+|...+.++.|.+++  .+++++.|+.|++||+.+++....+.+|..   
T Consensus       134 ~~~~~~~~~~v~~~d~--~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~  207 (615)
T 1pgu_A          134 VGEGRDNFGVFISWDS--GN----SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGS  207 (615)
T ss_dssp             EECCSSCSEEEEETTT--CC----EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTC
T ss_pred             eccCCCCccEEEEEEC--CC----cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCc
Confidence            9988    67888873  22    345677899999999998876  689999999999999999999999999999   


Q ss_pred             CeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeeeEe-c---CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcE
Q psy15421        186 DVMSLSLAPD-MRTFVSGACDASAKLWDIRDGSCKQTF-P---GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQE  260 (340)
Q Consensus       186 ~v~~~~~~~~-~~~~~sg~~dg~i~~wd~~~~~~~~~~-~---~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~  260 (340)
                      .+.+++|+|+ ++++++++.||.|++||+++++.+..+ .   +|..+|.+++|+ ++.++++++.|+.|++||+++.+.
T Consensus       208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~  286 (615)
T 1pgu_A          208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC  286 (615)
T ss_dssp             CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred             eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE
Confidence            9999999999 999999999999999999999998888 6   899999999999 999999999999999999998887


Q ss_pred             EEEeecC--CcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        261 LAMYSHD--NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       261 ~~~~~~~--~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      +..+...  .....+.++.|. ++.++++|+.|+.|++|+..+++.+..+.+|.+.|++++| |+   |++++.||.|++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~  361 (615)
T 1pgu_A          287 VQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIME  361 (615)
T ss_dssp             EEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEE
T ss_pred             EEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEE
Confidence            7666533  123457788885 8999999999999999999988888899999999999999 87   777888888888


Q ss_pred             cC
Q psy15421        339 WN  340 (340)
Q Consensus       339 W~  340 (340)
                      ||
T Consensus       362 w~  363 (615)
T 1pgu_A          362 WS  363 (615)
T ss_dssp             TT
T ss_pred             EE
Confidence            85

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=7.1e-39  Score=282.84  Aligned_cols=286  Identities=13%  Similarity=0.179  Sum_probs=235.0

Q ss_pred             EEeEEecCccCcEEEEEEcCC---CCeEEEEeCCCeEEEEeCCC-CCee-EEeeCCCCcEEEEEECCCCCEEEEEeCCCe
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSD---SRNLVSASQDGKLIVWDSYT-TNKV-HAIPLRSSWVMTCAYAPSGSFVACGGLDNI  120 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~d~~i~iwd~~~-~~~~-~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~  120 (340)
                      +..+.+++|.+.|++++|+|+   +++|++++.||.|++||+.+ +..+ ..+..|...|.+++|+|++++|++++.|+.
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  109 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT  109 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence            455678999999999999999   59999999999999999987 5544 678889999999999999999999999999


Q ss_pred             EEEEEccCCCCceEEEEeecCCCcceEEEEE--cCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC
Q psy15421        121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRF--LDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR  197 (340)
Q Consensus       121 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  197 (340)
                      |++|++.++.    . .....|...+.++.|  .+++ .+++++.|+.|++||+++++.+..+..+. .+.++.+.+  .
T Consensus       110 v~iwd~~~~~----~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~  181 (368)
T 3mmy_A          110 AKMWDLSSNQ----A-IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--P  181 (368)
T ss_dssp             EEEEETTTTE----E-EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--T
T ss_pred             EEEEEcCCCC----c-eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--C
Confidence            9999997653    1 224568999999998  6665 58899999999999999998888877664 566666664  4


Q ss_pred             EEEEEeCCCcEEEEECCCCeeeeEe--cCCCCCeEEEEEecCCCE----EEEEeCCCcEEEEeCcCC---cEEEEeecCC
Q psy15421        198 TFVSGACDASAKLWDIRDGSCKQTF--PGHESDINAVTFFPNGWA----FATGSDDATCRLFDIRAD---QELAMYSHDN  268 (340)
Q Consensus       198 ~~~sg~~dg~i~~wd~~~~~~~~~~--~~h~~~v~~v~~~~~~~~----l~s~s~d~~i~iwd~~~~---~~~~~~~~~~  268 (340)
                      .+++++.|+.+++|+++........  ..+...+.++.+.++...    +++++.|+.|++||++..   ..+..+....
T Consensus       182 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  261 (368)
T 3mmy_A          182 MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR  261 (368)
T ss_dssp             EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred             eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence            7888999999999999876433222  234456777777766544    999999999999999875   2233322111


Q ss_pred             ----------cccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        269 ----------IICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       269 ----------~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                                +...|++++|+|++++|++|+.|+.|++||..+++++..+.+|...|++++|+|+|.+|++||.|+..+.
T Consensus       262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~  341 (368)
T 3mmy_A          262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKG  341 (368)
T ss_dssp             EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred             cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccc
Confidence                      1115999999999999999999999999999999999999999999999999999999999999986554


Q ss_pred             c
Q psy15421        339 W  339 (340)
Q Consensus       339 W  339 (340)
                      |
T Consensus       342 ~  342 (368)
T 3mmy_A          342 H  342 (368)
T ss_dssp             G
T ss_pred             c
Confidence            4

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.7e-40  Score=293.82  Aligned_cols=257  Identities=20%  Similarity=0.383  Sum_probs=218.0

Q ss_pred             eEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-e
Q psy15421         78 KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-Q  156 (340)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~  156 (340)
                      .+..|+..+.....++.+|...|.+++|+|++++|++|+.|++|++||+.++.    ....+..|...|.++.|++++ .
T Consensus        47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~----~~~~~~~h~~~v~~~~~s~~g~~  122 (380)
T 3iz6_a           47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ----KTHAIKLHCPWVMECAFAPNGQS  122 (380)
T ss_dssp             GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE----EEEEEECCCTTCCCCEECTTSSE
T ss_pred             cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----cceEEecCCCCEEEEEECCCCCE
Confidence            34456666666778899999999999999999999999999999999987653    445677899999999998765 6


Q ss_pred             EEEEeCCCeEEEEECCCCc-------eEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeeeEe-----c
Q psy15421        157 IVTSSGDMSCALWDIETGQ-------QCASFIGHTGDVMSLSLAPDM-RTFVSGACDASAKLWDIRDGSCKQTF-----P  223 (340)
Q Consensus       157 l~~~~~d~~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~~~sg~~dg~i~~wd~~~~~~~~~~-----~  223 (340)
                      +++++.|+.+++||+.+..       ....+.+|.+.+.++.|.|++ ..+++|+.|++|++||+++++.+..+     .
T Consensus       123 las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~  202 (380)
T 3iz6_a          123 VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPS  202 (380)
T ss_dssp             EEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSS
T ss_pred             EEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCC
Confidence            8888999999999986532       234567899999999999974 57999999999999999999887776     6


Q ss_pred             CCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCcC-CcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCC
Q psy15421        224 GHESDINAVTFFP-NGWAFATGSDDATCRLFDIRA-DQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       224 ~h~~~v~~v~~~~-~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~  301 (340)
                      +|...|.+++|+| ++.+|++|+.|+.|++||++. .+.+..+.  .+...|++++|+|++++|++|+.|++|++||..+
T Consensus       203 ~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~  280 (380)
T 3iz6_a          203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH--GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT  280 (380)
T ss_dssp             SCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC--CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT
T ss_pred             CCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC--CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC
Confidence            7999999999987 789999999999999999974 34444332  3344699999999999999999999999999999


Q ss_pred             ceeeeeeccCC-------cceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        302 TERAGILAGHD-------NRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       302 ~~~~~~~~~h~-------~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++.+..+..|.       ..|++++|+|+|.+|++|+.||.|++||
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd  326 (380)
T 3iz6_a          281 GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD  326 (380)
T ss_dssp             TEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             CcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEE
Confidence            98887765543       3489999999999999999999999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.9e-38  Score=280.87  Aligned_cols=238  Identities=25%  Similarity=0.398  Sum_probs=205.2

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEE
Q psy15421         57 KIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVS  136 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~  136 (340)
                      .|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.++.    ..
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~----~~  200 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ----CS  200 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----EE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe----eE
Confidence            49999999999999999999999999999999889999999999999999999999999999999999997653    22


Q ss_pred             EeecCCCcceEEEEEcC-C-CeEEEEeCCCeEEEEECCCCceEEEE-------ecCCCCeEEEEEcCCCCEEEEEeCCCc
Q psy15421        137 RELPGHTGYLSCCRFLD-D-NQIVTSSGDMSCALWDIETGQQCASF-------IGHTGDVMSLSLAPDMRTFVSGACDAS  207 (340)
Q Consensus       137 ~~~~~~~~~v~~~~~~~-~-~~l~~~~~d~~v~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~sg~~dg~  207 (340)
                      ..+. +...+.++.+.+ + ..+++++.|+.|++||+++++.+..+       .+|...|.+++|+|+++++++|+.||+
T Consensus       201 ~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~  279 (393)
T 1erj_A          201 LTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS  279 (393)
T ss_dssp             EEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence            2222 445677777865 4 57889999999999999998877666       578999999999999999999999999


Q ss_pred             EEEEECCCC------------eeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEE
Q psy15421        208 AKLWDIRDG------------SCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITS  275 (340)
Q Consensus       208 i~~wd~~~~------------~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~  275 (340)
                      |++||+++.            .+...+.+|...|.+++|+|++.+|++|+.|+.|++||..+++.+..+.  .+...|.+
T Consensus       280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~--~h~~~v~~  357 (393)
T 1erj_A          280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ--GHRNSVIS  357 (393)
T ss_dssp             EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEE
T ss_pred             EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC--CCCCCEEE
Confidence            999999753            3456778999999999999999999999999999999999888776653  23346899


Q ss_pred             EEEcC------CCcEEEEEeCCCcEEEEeCCC
Q psy15421        276 VAFSR------SGRLLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       276 ~~~s~------~~~~l~~g~~d~~i~iw~~~~  301 (340)
                      ++|+|      ++++|++|+.|++|++|+...
T Consensus       358 v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          358 VAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            99876      689999999999999999653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-38  Score=282.17  Aligned_cols=251  Identities=18%  Similarity=0.251  Sum_probs=215.9

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCC--CCCeeEEeeCCCCcEEEEEECCC--CCEEEEEeCCCeEEE
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSY--TTNKVHAIPLRSSWVMTCAYAPS--GSFVACGGLDNICSI  123 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~i~~v~~~~~--~~~l~~~~~d~~v~i  123 (340)
                      .+.+++|.+.|++++|+|++++|++++.||.|+|||+.  +.+.+..+..|...|.+++|+|+  +.+|++++.|+.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   83 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence            45788999999999999999999999999999999987  55566788899999999999987  999999999999999


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEcCC---CeEEEEeCCCeEEEEECCCCc--eEEEEecCCCCeEEEEEcC----
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFLDD---NQIVTSSGDMSCALWDIETGQ--QCASFIGHTGDVMSLSLAP----  194 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~----  194 (340)
                      |++..+.  ......+..|...+.++.|.++   ..+++++.|+.|++||+..+.  ....+..|...+.+++|+|    
T Consensus        84 wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           84 WKEENGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  161 (379)
T ss_dssp             EEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred             EEcCCCc--eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence            9997642  2345566789999999999875   478899999999999998873  3456678999999999999    


Q ss_pred             ---------CCCEEEEEeCCCcEEEEECCCCe----eeeEecCCCCCeEEEEEecC---CCEEEEEeCCCcEEEEeCcCC
Q psy15421        195 ---------DMRTFVSGACDASAKLWDIRDGS----CKQTFPGHESDINAVTFFPN---GWAFATGSDDATCRLFDIRAD  258 (340)
Q Consensus       195 ---------~~~~~~sg~~dg~i~~wd~~~~~----~~~~~~~h~~~v~~v~~~~~---~~~l~s~s~d~~i~iwd~~~~  258 (340)
                               ++.++++|+.||.|++||++++.    ....+.+|..+|.+++|+|+   +.+|++++.||.|++||++..
T Consensus       162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence                     68999999999999999998764    44677889999999999999   899999999999999999875


Q ss_pred             c---EEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCC
Q psy15421        259 Q---ELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM  300 (340)
Q Consensus       259 ~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~  300 (340)
                      .   .........+...|.+++|+|++++|++++.||.|++|+..
T Consensus       242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            3   22223333345579999999999999999999999999975

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-38  Score=311.49  Aligned_cols=204  Identities=14%  Similarity=0.160  Sum_probs=174.2

Q ss_pred             ecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCC
Q psy15421         51 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTRE  130 (340)
Q Consensus        51 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~  130 (340)
                      ..||.+.|++++|+|++++||+|+.||+|+|||..+.+..... .|...|.+++|+| +++|++++.|++|++||+.++.
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~   90 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK   90 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence            3599999999999999999999999999999998776655444 4678899999999 8899999999999999998653


Q ss_pred             CceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceE-----------EEEecCCCCeEEEEEcCC-CC
Q psy15421        131 GNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQC-----------ASFIGHTGDVMSLSLAPD-MR  197 (340)
Q Consensus       131 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~  197 (340)
                          ....+. |...|.++.|++++ .+++|+.|+.|++||+++++..           ..+.+|.+.|.+++|+|+ +.
T Consensus        91 ----~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~  165 (902)
T 2oaj_A           91 ----VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG  165 (902)
T ss_dssp             ----EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE
T ss_pred             ----EEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC
Confidence                222332 66789999998764 6889999999999999987653           123568899999999996 46


Q ss_pred             EEEEEeCCCcEEEEECCCCeeeeEecCC------------------CCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCc
Q psy15421        198 TFVSGACDASAKLWDIRDGSCKQTFPGH------------------ESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ  259 (340)
Q Consensus       198 ~~~sg~~dg~i~~wd~~~~~~~~~~~~h------------------~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  259 (340)
                      .+++|+.||.| +||++++++...+..|                  ...|++++|+|+|.+|++|+.||.|++||+++++
T Consensus       166 ~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~  244 (902)
T 2oaj_A          166 TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH  244 (902)
T ss_dssp             EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred             EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            88999999999 9999999988888765                  4679999999999999999999999999998877


Q ss_pred             EEE
Q psy15421        260 ELA  262 (340)
Q Consensus       260 ~~~  262 (340)
                      .+.
T Consensus       245 ~~~  247 (902)
T 2oaj_A          245 MIM  247 (902)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.6e-39  Score=287.76  Aligned_cols=281  Identities=16%  Similarity=0.204  Sum_probs=232.0

Q ss_pred             cEEEEEEcCCCCeEE-EEeCCCeEEEEeCCCCC----eeEEeeCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEccCCC
Q psy15421         57 KIYAMHWGSDSRNLV-SASQDGKLIVWDSYTTN----KVHAIPLRSSWVMTCAYAP-SGSFVACGGLDNICSIYSLKTRE  130 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~----~~~~~~~~~~~i~~v~~~~-~~~~l~~~~~d~~v~i~~~~~~~  130 (340)
                      ....++++|+...++ +++.||.|+||++....    ....+.+|...|.+++|+| ++.+|++|+.|+.|++|++..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            344678888875544 57899999999986542    3445678999999999999 99999999999999999998753


Q ss_pred             Cce---EEEEeecCCCcceEEEEEcCCC--eEEEEeCCCeEEEEECCCCceEEEE--ecCCCCeEEEEEcCCCCEEEEEe
Q psy15421        131 GNV---RVSRELPGHTGYLSCCRFLDDN--QIVTSSGDMSCALWDIETGQQCASF--IGHTGDVMSLSLAPDMRTFVSGA  203 (340)
Q Consensus       131 ~~~---~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~sg~  203 (340)
                      ...   .....+.+|...|.++.|++++  .+++++.|+.|++||+++++....+  ..|...+.+++|+|+++++++++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC  195 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence            210   2335567899999999998764  6889999999999999999998888  78999999999999999999999


Q ss_pred             CCCcEEEEECCCCeeeeEe-cCCCCC-eEEEEEecCCCEEEEE---eCCCcEEEEeCcCCcE-EEEeecCCcccceEEEE
Q psy15421        204 CDASAKLWDIRDGSCKQTF-PGHESD-INAVTFFPNGWAFATG---SDDATCRLFDIRADQE-LAMYSHDNIICGITSVA  277 (340)
Q Consensus       204 ~dg~i~~wd~~~~~~~~~~-~~h~~~-v~~v~~~~~~~~l~s~---s~d~~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~  277 (340)
                      .||.|++||+++++.+..+ .+|.+. +.++.|+|++.++++|   +.|+.|++||+++.+. +.... ......+.+++
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~  274 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE-LDTSSGVLLPF  274 (402)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE-CCCCSSCEEEE
T ss_pred             cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe-ccCCCceeEEE
Confidence            9999999999999988888 788775 8999999999999999   7999999999987543 22222 12234589999


Q ss_pred             EcCCCcEEEE-EeCCCcEEEEeCCCcee-eeeecc--CCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        278 FSRSGRLLLA-GYDDFNCNVWDSMKTER-AGILAG--HDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       278 ~s~~~~~l~~-g~~d~~i~iw~~~~~~~-~~~~~~--h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |+|++++|++ |+.|+.|++|+..+.+. +..+..  |...|.+++|+|++.++++  .|+.+++|+
T Consensus       275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~  339 (402)
T 2aq5_A          275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK  339 (402)
T ss_dssp             EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred             EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence            9999999964 55799999999987763 444444  5699999999999998775  567999995

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.1e-37  Score=298.88  Aligned_cols=251  Identities=24%  Similarity=0.401  Sum_probs=216.1

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      ..+.+.+|...|.+++|+|++++|+||+.|++|+|||+.+++....+..|...|.+++|+|++++|++|+.|++|++|+.
T Consensus       422 ~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~  501 (694)
T 3dm0_A          422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT  501 (694)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             ccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEC
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCCC---eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEe
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDDN---QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGA  203 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~  203 (340)
                      ... ..........+|...|.++.|++++   .+++++.|++|++||+++++....+.+|.+.|.+++|+|+++++++|+
T Consensus       502 ~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~  580 (694)
T 3dm0_A          502 LGE-CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG  580 (694)
T ss_dssp             TSC-EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCC-cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence            532 1111222235788999999998753   589999999999999999999899999999999999999999999999


Q ss_pred             CCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCC---------------
Q psy15421        204 CDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDN---------------  268 (340)
Q Consensus       204 ~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~---------------  268 (340)
                      .||+|++||+++++.+..+.. ...|.+++|+|++.++++++ |+.|++||+++.+.+..+....               
T Consensus       581 ~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  658 (694)
T 3dm0_A          581 KDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT  658 (694)
T ss_dssp             TTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------------
T ss_pred             CCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccC
Confidence            999999999999998877764 46799999999998877766 5679999999877665442110               


Q ss_pred             --cccceEEEEEcCCCcEEEEEeCCCcEEEEeCC
Q psy15421        269 --IICGITSVAFSRSGRLLLAGYDDFNCNVWDSM  300 (340)
Q Consensus       269 --~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~  300 (340)
                        ....+++++|+|+|++|++|+.||.|++|++.
T Consensus       659 ~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          659 KRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             --CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence              11126889999999999999999999999964

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.9e-37  Score=300.54  Aligned_cols=289  Identities=18%  Similarity=0.286  Sum_probs=246.4

Q ss_pred             eEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q psy15421         45 MRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIY  124 (340)
Q Consensus        45 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~  124 (340)
                      ....+++.+|..+|.+++|+|++++|++++.||.|++||..+++.+..+..|...|.+++|+|++.++++++.|+.+++|
T Consensus        45 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  124 (814)
T 3mkq_A           45 QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW  124 (814)
T ss_dssp             TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEE
Confidence            34567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcC-C-CeEEEEeCCCeEEEEECCCCceEEEEecCC-CCeEEEEEcC--CCCEE
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLD-D-NQIVTSSGDMSCALWDIETGQQCASFIGHT-GDVMSLSLAP--DMRTF  199 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~~  199 (340)
                      ++..+.   .....+.+|...+.++.|++ + ..+++++.|+.|++||+.+++....+..+. ..+.+++|+|  ++.++
T Consensus       125 ~~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  201 (814)
T 3mkq_A          125 NWENNW---ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM  201 (814)
T ss_dssp             EGGGTS---EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEE
T ss_pred             ECCCCc---eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEE
Confidence            997642   34456678999999999987 4 478899999999999998887777776654 7899999999  99999


Q ss_pred             EEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEc
Q psy15421        200 VSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS  279 (340)
Q Consensus       200 ~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  279 (340)
                      ++|+.||.|++||++++++...+.+|...|.+++|+|++.++++++.||.|++||+.+.+.+..+...  ...+.+++|+
T Consensus       202 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~  279 (814)
T 3mkq_A          202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--LERSWCIATH  279 (814)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS--SSSEEEEEEC
T ss_pred             EEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC--CCcEEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999988777665433  3469999999


Q ss_pred             CCCc--EEEEEeCCCcEEEEeCCCceeee-------------------------------------------eeccCCcc
Q psy15421        280 RSGR--LLLAGYDDFNCNVWDSMKTERAG-------------------------------------------ILAGHDNR  314 (340)
Q Consensus       280 ~~~~--~l~~g~~d~~i~iw~~~~~~~~~-------------------------------------------~~~~h~~~  314 (340)
                      |++.  ++++++ ++.+.+|+........                                           .+..|...
T Consensus       280 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (814)
T 3mkq_A          280 PTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVF  358 (814)
T ss_dssp             TTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSC
T ss_pred             cCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccC
Confidence            9987  466665 5557788754321111                                           11334556


Q ss_pred             eEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        315 VSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       315 i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +.+++|+|+|++|++++ |+.+++|+
T Consensus       359 ~~~~~~spdg~~la~~~-~~~~~i~~  383 (814)
T 3mkq_A          359 PQSLAHSPNGRFVTVVG-DGEYVIYT  383 (814)
T ss_dssp             CSEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred             CceeEECCCCCEEEEec-CCEEEEEE
Confidence            88999999999999888 88999885

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-37  Score=273.93  Aligned_cols=251  Identities=16%  Similarity=0.252  Sum_probs=212.2

Q ss_pred             CeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC---CCeEEEEeCCC
Q psy15421         88 NKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD---DNQIVTSSGDM  164 (340)
Q Consensus        88 ~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~l~~~~~d~  164 (340)
                      +.+..+.+|...|.+++|+|++++|++|+.|+.|++|++....  ......+.+|...|.++.|.+   +..|++++.|+
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg   79 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   79 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc--ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence            3456778999999999999999999999999999999997432  345567789999999999964   46789999999


Q ss_pred             eEEEEECCCCc--eEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe--eeeEecCCCCCeEEEEEec--
Q psy15421        165 SCALWDIETGQ--QCASFIGHTGDVMSLSLAPD--MRTFVSGACDASAKLWDIRDGS--CKQTFPGHESDINAVTFFP--  236 (340)
Q Consensus       165 ~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~sg~~dg~i~~wd~~~~~--~~~~~~~h~~~v~~v~~~~--  236 (340)
                      .|++||+.+++  ....+..|...+.+++|+|+  +.++++++.||.|++||++.+.  ....+.+|...|.+++|+|  
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  159 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence            99999999887  66777889999999999999  8999999999999999998874  3456678999999999999  


Q ss_pred             -----------CCCEEEEEeCCCcEEEEeCcCCcEEEE--eecCCcccceEEEEEcCC---CcEEEEEeCCCcEEEEeCC
Q psy15421        237 -----------NGWAFATGSDDATCRLFDIRADQELAM--YSHDNIICGITSVAFSRS---GRLLLAGYDDFNCNVWDSM  300 (340)
Q Consensus       237 -----------~~~~l~s~s~d~~i~iwd~~~~~~~~~--~~~~~~~~~i~~~~~s~~---~~~l~~g~~d~~i~iw~~~  300 (340)
                                 ++.++++|+.|+.|++||++.......  .....+...|.+++|+|+   +++|++++.|+.|++|+..
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~  239 (379)
T 3jrp_A          160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  239 (379)
T ss_dssp             ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence                       699999999999999999986543211  122334456999999999   8999999999999999987


Q ss_pred             Cce-----eeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        301 KTE-----RAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       301 ~~~-----~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +..     .......|...|++++|+|+|++|++++.||.|++||
T Consensus       240 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~  284 (379)
T 3jrp_A          240 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  284 (379)
T ss_dssp             STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred             CCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence            753     2333445889999999999999999999999999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.1e-36  Score=266.35  Aligned_cols=252  Identities=25%  Similarity=0.420  Sum_probs=218.1

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      ..+++++|...|.+++|+|++++|++++.|+.|++|+............+...+....+++++.++++++.|+.+++|+.
T Consensus        78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~  157 (340)
T 4aow_A           78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT  157 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence            45789999999999999999999999999999999999988888888888888999999999999999999999999998


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCC---CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEe
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDD---NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGA  203 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~  203 (340)
                      ....   .......+|...+..+.|..+   ..+++++.|+.|++||+++++....+.+|.+.|.+++|+|+++++++|+
T Consensus       158 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s  234 (340)
T 4aow_A          158 LGVC---KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG  234 (340)
T ss_dssp             TSCE---EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCc---eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe
Confidence            5432   334456788999998888643   3577899999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeec-------CCcccceEEE
Q psy15421        204 CDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSH-------DNIICGITSV  276 (340)
Q Consensus       204 ~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-------~~~~~~i~~~  276 (340)
                      .||.|++||+++.+++..+..+ ..+.++.|+|++. +++++.|+.|++||++....+..+..       ..+...|+++
T Consensus       235 ~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  312 (340)
T 4aow_A          235 KDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL  312 (340)
T ss_dssp             TTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEE
T ss_pred             CCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEE
Confidence            9999999999999988888754 6899999999875 55666799999999988766554422       2234569999


Q ss_pred             EEcCCCcEEEEEeCCCcEEEEeCCCce
Q psy15421        277 AFSRSGRLLLAGYDDFNCNVWDSMKTE  303 (340)
Q Consensus       277 ~~s~~~~~l~~g~~d~~i~iw~~~~~~  303 (340)
                      +|+|++++|++|+.||.|++|++.++.
T Consensus       313 ~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          313 AWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            999999999999999999999988764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=277.14  Aligned_cols=279  Identities=11%  Similarity=0.120  Sum_probs=226.9

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC---eeEEeeC-------------------------------------
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN---KVHAIPL-------------------------------------   95 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~-------------------------------------   95 (340)
                      .++.+++|+++|++|++ +.++.|++||+.+++   .+..+..                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~-~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFA-IIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEE-EETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEE-EeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            57899999999996655 467899999998888   5544442                                     


Q ss_pred             -----------------CCCcEEEEEECCCCCEE-EEEeCCCeEEEEEcc--CCCCceEEEEeecCCCcceEEEEEcCCC
Q psy15421         96 -----------------RSSWVMTCAYAPSGSFV-ACGGLDNICSIYSLK--TREGNVRVSRELPGHTGYLSCCRFLDDN  155 (340)
Q Consensus        96 -----------------~~~~i~~v~~~~~~~~l-~~~~~d~~v~i~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~  155 (340)
                                       |...|.+++|+|++++| ++++.|+.|++|++.  .+.  .........|...+.++.|++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~  161 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN--VLKLRKRFCFSKRPNAISIAEDD  161 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS--CEEEEEEEECSSCEEEEEECTTS
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc--eeeeeecccCCCCceEEEEcCCC
Confidence                             22369999999999996 899999999999997  432  21122223567889999998765


Q ss_pred             -eEEEEeCCCeEEEEECCCCceEE----EEecCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCeeeeE-ecCCC
Q psy15421        156 -QIVTSSGDMSCALWDIETGQQCA----SFIGHTGDVMSLSLAPD---MRTFVSGACDASAKLWDIRDGSCKQT-FPGHE  226 (340)
Q Consensus       156 -~l~~~~~d~~v~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~~~sg~~dg~i~~wd~~~~~~~~~-~~~h~  226 (340)
                       .|++++.++.+.+|++.+++...    .+.+|...|.+++|+|+   ++++++|+.|+.|++||+++++++.. +.+|.
T Consensus       162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~  241 (450)
T 2vdu_B          162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK  241 (450)
T ss_dssp             SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred             CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence             68889999999999998876543    67789999999999999   99999999999999999999887776 56899


Q ss_pred             CCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecC-----------------------CcccceEEEEEcCCCc
Q psy15421        227 SDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHD-----------------------NIICGITSVAFSRSGR  283 (340)
Q Consensus       227 ~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-----------------------~~~~~i~~~~~s~~~~  283 (340)
                      ..|.+++|+ ++.+|++|+.|+.|++||+.+++.+..+...                       .....+.+++|+|+++
T Consensus       242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  320 (450)
T 2vdu_B          242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP  320 (450)
T ss_dssp             SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred             CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence            999999999 9999999999999999999988877665421                       1224588999999999


Q ss_pred             EEEEEe-CCCcEEEEeC--CCc---eeeeeeccCCcceEEEEECCCCCEEEEeeC------CCcEEec
Q psy15421        284 LLLAGY-DDFNCNVWDS--MKT---ERAGILAGHDNRVSCLGVTEDGMAVATGSW------DSFLRIW  339 (340)
Q Consensus       284 ~l~~g~-~d~~i~iw~~--~~~---~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~------D~~i~iW  339 (340)
                      +|++++ .|+.|++|++  .+.   +.+..+..| +.|.+++|+|++.+++.++.      +..|.+|
T Consensus       321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~  387 (450)
T 2vdu_B          321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFI  387 (450)
T ss_dssp             EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEE
T ss_pred             EEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEE
Confidence            999999 8999999998  554   667777788 89999999997654444443      4557776

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-38  Score=291.86  Aligned_cols=230  Identities=13%  Similarity=0.045  Sum_probs=184.5

Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC-------CeEEEEeCCCeEEEEECCCCce-----
Q psy15421        109 GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-------NQIVTSSGDMSCALWDIETGQQ-----  176 (340)
Q Consensus       109 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~l~~~~~d~~v~iwd~~~~~~-----  176 (340)
                      +..+++++.|++|+||++.+++........+.+|.+.|..+.|++.       +.|++++.|++|++||+..++.     
T Consensus       173 ~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~  252 (524)
T 2j04_B          173 LEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF  252 (524)
T ss_dssp             ---------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred             hhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence            3344556688999999997755333323345667888999999864       4788999999999999976532     


Q ss_pred             ------EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eeeEecCCCCCeEEE--EEecCC-CEEEEEeC
Q psy15421        177 ------CASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS-CKQTFPGHESDINAV--TFFPNG-WAFATGSD  246 (340)
Q Consensus       177 ------~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~-~~~~~~~h~~~v~~v--~~~~~~-~~l~s~s~  246 (340)
                            ...+.+|...|.+++|+|++ .|++|+.||+|++||++++. +...+.+|..+|++|  +|+|++ .+||||+.
T Consensus       253 ~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~  331 (524)
T 2j04_B          253 KMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV  331 (524)
T ss_dssp             ECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET
T ss_pred             eeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc
Confidence                  23667899999999999864 89999999999999998764 445688999999999  567887 89999999


Q ss_pred             CCcEEEEeCcCCcEEEEee-cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCC
Q psy15421        247 DATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGM  325 (340)
Q Consensus       247 d~~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~  325 (340)
                      |++|++||+++.+.+..+. +.. ...|.+++|+|+++.+++++.|++|++||..++.+...+.+|.+.|++++|||+|+
T Consensus       332 D~tvklWD~~~~~~~~~~~~~~~-~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~  410 (524)
T 2j04_B          332 DGYFYIFNPKDIATTKTTVSRFR-GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHP  410 (524)
T ss_dssp             TSEEEEECGGGHHHHCEEEEECS-CCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCC
T ss_pred             CCeEEEEECCCCCcccccccccc-cCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCC
Confidence            9999999998766543332 221 12377899999999999999999999999998888788889999999999999999


Q ss_pred             EEEEeeCCCcEEecC
Q psy15421        326 AVATGSWDSFLRIWN  340 (340)
Q Consensus       326 ~l~s~s~D~~i~iW~  340 (340)
                      +|+|||.|++|++||
T Consensus       411 ~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          411 MVLAGSADGSLIITN  425 (524)
T ss_dssp             BCEEEETTTEEECCB
T ss_pred             eEEEEECCCEEEEEe
Confidence            999999999999996

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.2e-36  Score=268.75  Aligned_cols=277  Identities=10%  Similarity=0.092  Sum_probs=209.3

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEE-EEEeCCCeEEEEEcc
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFV-ACGGLDNICSIYSLK  127 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l-~~~~~d~~v~i~~~~  127 (340)
                      .++.+|.+.|++++|+||+++|++|+.|+ ++|||..+.+.......+  .+..+.+.++++++ ++++.|++|++||..
T Consensus        13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~   89 (355)
T 3vu4_A           13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDDV   89 (355)
T ss_dssp             ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEETT
T ss_pred             cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEECC
Confidence            35689999999999999999999888775 789998877665544332  36778888888877 567788999999987


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCC-ceEEEEecCCCCeEEEEEcCCCCEEEE--EeC
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETG-QQCASFIGHTGDVMSLSLAPDMRTFVS--GAC  204 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~s--g~~  204 (340)
                      ++.    ....+. +...+.++.+.++..+ . ..|+.|++||+.++ +.+..+..   +...+++++  .+++.  |+.
T Consensus        90 ~~~----~~~~~~-~~~~v~~v~~~~~~~~-~-~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~  157 (355)
T 3vu4_A           90 KKQ----DVSRIK-VDAPVKDLFLSREFIV-V-SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFN  157 (355)
T ss_dssp             TTE----EEEEEE-CSSCEEEEEECSSEEE-E-EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSC
T ss_pred             CCc----EEEEEE-CCCceEEEEEcCCEEE-E-EEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCc
Confidence            653    223333 5567888888655433 3 35889999999987 55554443   344566777  45554  689


Q ss_pred             CCcEEEEECCCCe----------------eeeEecCCCCCeEEEEEecCCCEEEEEeCCCc-EEEEeCcCCcEEEEeecC
Q psy15421        205 DASAKLWDIRDGS----------------CKQTFPGHESDINAVTFFPNGWAFATGSDDAT-CRLFDIRADQELAMYSHD  267 (340)
Q Consensus       205 dg~i~~wd~~~~~----------------~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~-i~iwd~~~~~~~~~~~~~  267 (340)
                      ||.|++||++++.                +...+.+|..+|++++|+|++.+|++|+.|++ |++||+++++.+..+...
T Consensus       158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g  237 (355)
T 3vu4_A          158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG  237 (355)
T ss_dssp             TTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred             CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence            9999999999765                26788999999999999999999999999998 999999998888777522


Q ss_pred             CcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCcee--eeeec---------------------cCCcceEEEEECCCC
Q psy15421        268 NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTER--AGILA---------------------GHDNRVSCLGVTEDG  324 (340)
Q Consensus       268 ~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~--~~~~~---------------------~h~~~i~~~~~s~d~  324 (340)
                      .+...|.+++|+|++++|++|+.|++|++||......  ...+.                     .+......++|++||
T Consensus       238 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~  317 (355)
T 3vu4_A          238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES  317 (355)
T ss_dssp             TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC
Confidence            2345799999999999999999999999999865421  11111                     112234679999999


Q ss_pred             CEEEEeeCCCcEEecC
Q psy15421        325 MAVATGSWDSFLRIWN  340 (340)
Q Consensus       325 ~~l~s~s~D~~i~iW~  340 (340)
                      ++|++++.||.+++|+
T Consensus       318 ~~l~~~~~dg~~~~~~  333 (355)
T 3vu4_A          318 SLVVVWPHTRMIETFK  333 (355)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             CEEEEEeCCCeEEEEE
Confidence            9999999999999984

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.3e-36  Score=270.22  Aligned_cols=256  Identities=12%  Similarity=0.141  Sum_probs=220.1

Q ss_pred             EeEEecCccCcEEEEEEcCC----C---CeEEEEeCCCeEEEEeCCCCCe-----eEEeeCC-----CCcEEEEEEC---
Q psy15421         47 TRRTLRGHLAKIYAMHWGSD----S---RNLVSASQDGKLIVWDSYTTNK-----VHAIPLR-----SSWVMTCAYA---  106 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~----~---~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~-----~~~i~~v~~~---  106 (340)
                      ....+.+|...|.+++|+|+    +   ++|++++.|+.|++||+.+++.     ...+..|     ...|.+++|+   
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence            35677899999999999999    9   9999999999999999988876     7788888     5889999999   


Q ss_pred             -CCCCE-EEEEeCCCeEEEEEccC------CCCce-EEEEee-------cCCCcceEEEEEcCCCeEEEEeCCCeEEEEE
Q psy15421        107 -PSGSF-VACGGLDNICSIYSLKT------REGNV-RVSREL-------PGHTGYLSCCRFLDDNQIVTSSGDMSCALWD  170 (340)
Q Consensus       107 -~~~~~-l~~~~~d~~v~i~~~~~------~~~~~-~~~~~~-------~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd  170 (340)
                       |++.+ |++++.|+.|++|++..      ..... .....+       ..|...+.++.|.+++.+++++.|+.|++||
T Consensus       134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d  213 (397)
T 1sq9_A          134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISE  213 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEE
T ss_pred             CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEE
Confidence             99999 99999999999999987      33221 111133       4578889999998766777888999999999


Q ss_pred             CCCCceEEEEec---C---CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeeeEecC-------------CCCC
Q psy15421        171 IETGQQCASFIG---H---TGDVMSLSLAPDMRTFVSGACD---ASAKLWDIRDGSCKQTFPG-------------HESD  228 (340)
Q Consensus       171 ~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~sg~~d---g~i~~wd~~~~~~~~~~~~-------------h~~~  228 (340)
                      +++++.+..+..   |   ...+.+++|+|+++++++++.|   |.|++||+++++.+..+.+             |...
T Consensus       214 ~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (397)
T 1sq9_A          214 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW  293 (397)
T ss_dssp             TTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC
T ss_pred             CCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCc
Confidence            999999999988   8   9999999999999999999999   9999999999999999988             9999


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecC----Cc---------------ccceEEEEEcCCC-------
Q psy15421        229 INAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHD----NI---------------ICGITSVAFSRSG-------  282 (340)
Q Consensus       229 v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~----~~---------------~~~i~~~~~s~~~-------  282 (340)
                      |.+++|+|++.+|++++.|+.|++||+++.+.+..+...    .+               ...|++++|+|++       
T Consensus       294 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~  373 (397)
T 1sq9_A          294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGA  373 (397)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccc
Confidence            999999999999999999999999999988887766510    22               4579999999998       


Q ss_pred             ---cEEEEEeCCCcEEEEeCCCc
Q psy15421        283 ---RLLLAGYDDFNCNVWDSMKT  302 (340)
Q Consensus       283 ---~~l~~g~~d~~i~iw~~~~~  302 (340)
                         ++|++|+.|+.|++|+..++
T Consensus       374 ~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          374 DLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             TTSCEEEEEETTTEEEEEEEEC-
T ss_pred             cccceEEEecCCCcEEEEEcCCC
Confidence               79999999999999997664

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.2e-38  Score=279.80  Aligned_cols=242  Identities=16%  Similarity=0.169  Sum_probs=199.8

Q ss_pred             eeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEEC
Q psy15421         93 IPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDI  171 (340)
Q Consensus        93 ~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~  171 (340)
                      ...+...|.+++|+|++++|++|+.|+.|++|++.++.  ......+.+|...|.++.|+++ ..|++++.|+.|++||+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG--WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE--EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc--eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            34456789999999999999999999999999997542  2344567789999999999876 47899999999999999


Q ss_pred             CCCc---eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---eeeEecC-CCCCeEEEEEecCCCEEEEE
Q psy15421        172 ETGQ---QCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS---CKQTFPG-HESDINAVTFFPNGWAFATG  244 (340)
Q Consensus       172 ~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~---~~~~~~~-h~~~v~~v~~~~~~~~l~s~  244 (340)
                      .+++   ....+..|...+.+++|+|+++++++|+.|+.|++||+++++   +...+.+ |...|.+++|+|++.+|+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~  164 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG  164 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence            9877   566778899999999999999999999999999999999876   3667777 99999999999999999999


Q ss_pred             eCCCcEEEEeCcC------------------CcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCcee--
Q psy15421        245 SDDATCRLFDIRA------------------DQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTER--  304 (340)
Q Consensus       245 s~d~~i~iwd~~~------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~--  304 (340)
                      +.|+.|++||+..                  .+.+..+   .+...|.+++|+|++++|++|+.|+.|++||..+++.  
T Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~  241 (377)
T 3dwl_C          165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP  241 (377)
T ss_dssp             ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred             eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence            9999999999852                  2223332   3445699999999999999999999999999988877  


Q ss_pred             --eeeeccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        305 --AGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       305 --~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                        +..+.+|...|.+++|+|++++|++|+.|+.+.+|
T Consensus       242 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~  278 (377)
T 3dwl_C          242 RALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQ  278 (377)
T ss_dssp             EECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEEC
T ss_pred             eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEE
Confidence              78889999999999999999999999877777444

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.3e-36  Score=268.37  Aligned_cols=254  Identities=14%  Similarity=0.225  Sum_probs=215.3

Q ss_pred             EEec-CccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         49 RTLR-GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        49 ~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      +.+. .|...|.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|.++.|  ++.++++++.|+.|++|+++
T Consensus       127 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~  204 (401)
T 4aez_A          127 ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVR  204 (401)
T ss_dssp             EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred             EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecc
Confidence            3444 38999999999999999999999999999999999999999999999999999  56899999999999999997


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC-EEEEEe--
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR-TFVSGA--  203 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~sg~--  203 (340)
                      ....   ....+.+|...+.++.|++++ .+++++.|+.|++||+++++....+..|...+.+++|+|++. ++++|+  
T Consensus       205 ~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs  281 (401)
T 4aez_A          205 IANH---QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT  281 (401)
T ss_dssp             SSSC---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCT
T ss_pred             cCcc---eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCC
Confidence            5432   345567899999999998764 688999999999999999999889999999999999999765 555654  


Q ss_pred             CCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEE--eCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCC
Q psy15421        204 CDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATG--SDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRS  281 (340)
Q Consensus       204 ~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~--s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  281 (340)
                      .|+.|++||++++++...+. +...|.+++|+|++.+++++  +.||.|++||+.+.+.........+...|.+++|+|+
T Consensus       282 ~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~d  360 (401)
T 4aez_A          282 MDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD  360 (401)
T ss_dssp             TTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTT
T ss_pred             CCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCC
Confidence            79999999999999888886 66789999999999999994  4899999999988665554433344457999999999


Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeeee
Q psy15421        282 GRLLLAGYDDFNCNVWDSMKTERAGIL  308 (340)
Q Consensus       282 ~~~l~~g~~d~~i~iw~~~~~~~~~~~  308 (340)
                      +++|++|+.|+.|++|+..+++.+...
T Consensus       361 g~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          361 GRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             SSEEEEECTTSEEEEEECCC-------
T ss_pred             CCEEEEEeCCCcEEEEECCCCcccccc
Confidence            999999999999999999888766544

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-37  Score=296.12  Aligned_cols=251  Identities=18%  Similarity=0.245  Sum_probs=212.4

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCC--CCCeeEEeeCCCCcEEEEEECCC--CCEEEEEeCCCeEEEE
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSY--TTNKVHAIPLRSSWVMTCAYAPS--GSFVACGGLDNICSIY  124 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~i~~v~~~~~--~~~l~~~~~d~~v~i~  124 (340)
                      ..+.||.+.|++++|+|++++|++|+.||+|++||+.  +.+.+..+..|...|.+++|+|+  +.++++|+.|+.|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            4688999999999999999999999999999999987  44567788899999999999988  9999999999999999


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCC---CeEEEEeCCCeEEEEECCCCc--eEEEEecCCCCeEEEEEcC-----
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDD---NQIVTSSGDMSCALWDIETGQ--QCASFIGHTGDVMSLSLAP-----  194 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~-----  194 (340)
                      ++.++.  ........+|...+.++.|+++   ..+++++.|+.|++||++++.  ....+.+|...+.+++|+|     
T Consensus        83 d~~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~  160 (753)
T 3jro_A           83 KEENGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (753)
T ss_dssp             EEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred             ECCCCc--ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence            997642  3345567789999999999875   478999999999999998773  3456678999999999999     


Q ss_pred             --------CCCEEEEEeCCCcEEEEECCCC----eeeeEecCCCCCeEEEEEecC---CCEEEEEeCCCcEEEEeCcCCc
Q psy15421        195 --------DMRTFVSGACDASAKLWDIRDG----SCKQTFPGHESDINAVTFFPN---GWAFATGSDDATCRLFDIRADQ  259 (340)
Q Consensus       195 --------~~~~~~sg~~dg~i~~wd~~~~----~~~~~~~~h~~~v~~v~~~~~---~~~l~s~s~d~~i~iwd~~~~~  259 (340)
                              ++..+++|+.||.|++||++++    .+...+.+|..+|.+++|+|+   +.++++|+.||.|++||++...
T Consensus       161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred             ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence                    5899999999999999999877    456678899999999999999   8999999999999999998753


Q ss_pred             EE---EEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCC
Q psy15421        260 EL---AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       260 ~~---~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~  301 (340)
                      ..   .......+...|++++|+|+++++++|+.||.|++|+...
T Consensus       241 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             SCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             CcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            21   1112223445689999999999999999999999999763

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.9e-35  Score=266.83  Aligned_cols=265  Identities=14%  Similarity=0.301  Sum_probs=212.8

Q ss_pred             EecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q psy15421         50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTR  129 (340)
Q Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~  129 (340)
                      .+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+..|...+.++.+  ++.+|++|+.|+.+++|+....
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~  219 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA  219 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeeccc
Confidence            34578889999999999999999999999999999999999999999998888765  5789999999999999998764


Q ss_pred             CCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCc----eEEEEecCCCCeEEEEEcCCCC-EEEE--
Q psy15421        130 EGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQ----QCASFIGHTGDVMSLSLAPDMR-TFVS--  201 (340)
Q Consensus       130 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~-~~~s--  201 (340)
                      ..   ....+.+|...+..+.+.++ ..+++++.|+.+++|+..+++    .+.....|...|.+++|+|++. .+++  
T Consensus       220 ~~---~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~  296 (420)
T 4gga_A          220 EH---HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG  296 (420)
T ss_dssp             SC---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE
T ss_pred             ce---eeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe
Confidence            42   34567789999999988766 468889999999999998765    3456678999999999999765 4444  


Q ss_pred             EeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEe--CCCcEEEEeCcCCcEEEEeecCCcccceEEEEEc
Q psy15421        202 GACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGS--DDATCRLFDIRADQELAMYSHDNIICGITSVAFS  279 (340)
Q Consensus       202 g~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  279 (340)
                      |+.|++|++||++++++...+..| ..+.++.|+|++..+++++  .|+.|++||+.+.+++..+.  .+...|++++|+
T Consensus       297 gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~--gH~~~V~~l~~s  373 (420)
T 4gga_A          297 GTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMS  373 (420)
T ss_dssp             CTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--CCSSCEEEEEEC
T ss_pred             ecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEc
Confidence            457999999999999998888755 5688999999999888765  79999999999988887764  344579999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECC
Q psy15421        280 RSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTE  322 (340)
Q Consensus       280 ~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~  322 (340)
                      |+|++|++|+.|++|++|++...++......|...+....+..
T Consensus       374 pdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~~~  416 (420)
T 4gga_A          374 PDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLIH  416 (420)
T ss_dssp             TTSSCEEEEETTTEEEEECCSCSSCC-----------------
T ss_pred             CCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccccCC
Confidence            9999999999999999999887766666655655554444433

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1e-35  Score=263.40  Aligned_cols=256  Identities=15%  Similarity=0.159  Sum_probs=216.7

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEE--eeCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHA--IPLRSSWVMTCAYAPSGSFVACGGLDNICSIY  124 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~  124 (340)
                      ....+.+|...|.+++|+|++++|++++.|+.|++||+.+++....  +..|...|.+++|+|++++|++++.|+.+++|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~  123 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC  123 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence            5678899999999999999999999999999999999987764433  35688899999999999999999999999999


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEEC------------------CCCceEEEEecCCC
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDI------------------ETGQQCASFIGHTG  185 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~------------------~~~~~~~~~~~~~~  185 (340)
                      ++..+...........+|...+.++.|.+++ .+++++.|+.|++||+                  ..++.+..+..|..
T Consensus       124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (372)
T 1k8k_C          124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG  203 (372)
T ss_dssp             EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS
T ss_pred             EecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC
Confidence            9987654333333446788999999998765 6888999999999995                  36677888889999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcC--CcEEE-
Q psy15421        186 DVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRA--DQELA-  262 (340)
Q Consensus       186 ~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~--~~~~~-  262 (340)
                      .+.+++|+|+++++++++.||.|++||+++++++..+..|..+|.+++|+|++.++++| .|+.|++|++..  ++-.. 
T Consensus       204 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~  282 (372)
T 1k8k_C          204 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFG  282 (372)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEEC
T ss_pred             eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEe
Confidence            99999999999999999999999999999999999999999999999999999888887 899999999987  32000 


Q ss_pred             ----------------------------E-------ee-cCCcccceEEEEEc-CCC---cEEEEEeCCCcEEEEeCCCc
Q psy15421        263 ----------------------------M-------YS-HDNIICGITSVAFS-RSG---RLLLAGYDDFNCNVWDSMKT  302 (340)
Q Consensus       263 ----------------------------~-------~~-~~~~~~~i~~~~~s-~~~---~~l~~g~~d~~i~iw~~~~~  302 (340)
                                                  .       .. ...+...|++++|+ ++|   ++|++|+.||.|++|++.++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          283 GRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  362 (372)
T ss_dssp             CCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             eccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence                                        0       00 12345579999866 666   99999999999999997664


Q ss_pred             e
Q psy15421        303 E  303 (340)
Q Consensus       303 ~  303 (340)
                      +
T Consensus       363 ~  363 (372)
T 1k8k_C          363 E  363 (372)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-37  Score=269.22  Aligned_cols=269  Identities=14%  Similarity=0.083  Sum_probs=209.5

Q ss_pred             EEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCC------CceE
Q psy15421         61 MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTRE------GNVR  134 (340)
Q Consensus        61 ~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~------~~~~  134 (340)
                      ..+.+++..+++|+.||+|++||+.+++.+..+.  ...|.++.++|+   +++++.|+++++|+.....      ....
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~  116 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV  116 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence            3455688899999999999999999998877765  345667778887   9999999999999865311      1111


Q ss_pred             EEEeecCCCcceEEEEEcC--CC-eEEEEeCCCeEEEEECCCCceEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q psy15421        135 VSRELPGHTGYLSCCRFLD--DN-QIVTSSGDMSCALWDIETGQQCASFI-GHTGDVMSLSLAPDMRTFVSGACDASAKL  210 (340)
Q Consensus       135 ~~~~~~~~~~~v~~~~~~~--~~-~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~sg~~dg~i~~  210 (340)
                      ......+|...+.++.|.+  ++ .+++++.|++|++||+++++...... .|...+.+++|+|++.++++|+.||.|++
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i  196 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV  196 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence            2222336778899999987  54 68889999999999999998866553 35567999999999999999999999999


Q ss_pred             EECCCCeee-eEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeec-CCcccce--EEEEEcCCCcEE
Q psy15421        211 WDIRDGSCK-QTFPG-HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSH-DNIICGI--TSVAFSRSGRLL  285 (340)
Q Consensus       211 wd~~~~~~~-~~~~~-h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~~~~i--~~~~~s~~~~~l  285 (340)
                      ||+++++.. ..++. |..+|++++|+|++.+|++++ |+.|++||+++.+.+..+.. ......+  .+++|+|++++|
T Consensus       197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  275 (343)
T 3lrv_A          197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNM  275 (343)
T ss_dssp             EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEE
T ss_pred             EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEE
Confidence            999999877 77887 999999999999999999999 55999999997765433221 0111122  469999999999


Q ss_pred             EEEeC-CCcEEEEeCCCceeeeeeccCCcceEEEEECC---CCCEEEEeeCCCcEEec
Q psy15421        286 LAGYD-DFNCNVWDSMKTERAGILAGHDNRVSCLGVTE---DGMAVATGSWDSFLRIW  339 (340)
Q Consensus       286 ~~g~~-d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~---d~~~l~s~s~D~~i~iW  339 (340)
                      ++++. |+.+++|+..+....-..    .++..++|++   +...|++++.|+.++++
T Consensus       276 ~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          276 IAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             EEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred             EEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence            99998 999999997554322222    6677888888   88899999999998875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-37  Score=280.37  Aligned_cols=267  Identities=13%  Similarity=0.182  Sum_probs=217.9

Q ss_pred             EcCCCCeEEEEeCCCeEEEEeCCCCCeeEEe-eCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEccC---CCCceEEEE
Q psy15421         63 WGSDSRNLVSASQDGKLIVWDSYTTNKVHAI-PLRSSWVMTCAYAP-SGSFVACGGLDNICSIYSLKT---REGNVRVSR  137 (340)
Q Consensus        63 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~i~~v~~~~-~~~~l~~~~~d~~v~i~~~~~---~~~~~~~~~  137 (340)
                      |+|++..+++++      .|+ .+++.+..+ ..|...|.+++|+| ++.+|++|+.|++|++|++..   +. ......
T Consensus        35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~  106 (437)
T 3gre_A           35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSSL  106 (437)
T ss_dssp             GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCSE
T ss_pred             cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-ccceee
Confidence            678888777655      388 456777788 88899999999999 999999999999999999876   22 111111


Q ss_pred             eecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECC---CCceEEEEec------------CCCCeEEEE--EcCCCCEE
Q psy15421        138 ELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIE---TGQQCASFIG------------HTGDVMSLS--LAPDMRTF  199 (340)
Q Consensus       138 ~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~~  199 (340)
                      .. .|...|.++.|.++ ..+++++.|+.|++||+.   .++....+..            +...+.++.  ++|++.++
T Consensus       107 ~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l  185 (437)
T 3gre_A          107 TY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL  185 (437)
T ss_dssp             EE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred             ec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence            22 48899999999875 468899999999999995   4544333221            445666666  56789999


Q ss_pred             EEEeCCCcEEEEECCCCeeeeEecC--CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEE
Q psy15421        200 VSGACDASAKLWDIRDGSCKQTFPG--HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVA  277 (340)
Q Consensus       200 ~sg~~dg~i~~wd~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  277 (340)
                      ++|+.||.|++||+++++++..+.+  |...|++++|+|++.+|++|+.||.|++||++..+.+..+... ...+|.+++
T Consensus       186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~  264 (437)
T 3gre_A          186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG-DHAPITHVE  264 (437)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT-TCEEEEEEE
T ss_pred             EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC-CCCceEEEE
Confidence            9999999999999999999999987  8899999999999999999999999999999988877765422 223689996


Q ss_pred             Ec----CCCcEEEEEeCCCcEEEEeCCCceeeeeecc--------------------------CCcceEEEEECCCCCEE
Q psy15421        278 FS----RSGRLLLAGYDDFNCNVWDSMKTERAGILAG--------------------------HDNRVSCLGVTEDGMAV  327 (340)
Q Consensus       278 ~s----~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~--------------------------h~~~i~~~~~s~d~~~l  327 (340)
                      |+    |++++|++|+.|+.|++||..+++....+.+                          |...|++++|+ ++.+|
T Consensus       265 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l  343 (437)
T 3gre_A          265 VCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKIL  343 (437)
T ss_dssp             ECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEE
T ss_pred             eccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEE
Confidence            65    5688999999999999999998887666553                          55678899999 77899


Q ss_pred             EEeeCCCcEEecC
Q psy15421        328 ATGSWDSFLRIWN  340 (340)
Q Consensus       328 ~s~s~D~~i~iW~  340 (340)
                      ++|+.|+.|++||
T Consensus       344 ~s~~~d~~i~~wd  356 (437)
T 3gre_A          344 LTDEATSSIVMFS  356 (437)
T ss_dssp             EEEGGGTEEEEEE
T ss_pred             EecCCCCeEEEEE
Confidence            9999999999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1e-36  Score=269.02  Aligned_cols=241  Identities=17%  Similarity=0.248  Sum_probs=207.0

Q ss_pred             ccCcEEEEEEcCC----CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEccC
Q psy15421         54 HLAKIYAMHWGSD----SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP-SGSFVACGGLDNICSIYSLKT  128 (340)
Q Consensus        54 h~~~v~~~~~s~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~-~~~~l~~~~~d~~v~i~~~~~  128 (340)
                      |...|++++|+|+    +++|++++.||.|++||+.+++.+..+..|...|.+++|+| ++.+|++++.|+.|++|++.+
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            6688999999999    66899999999999999999999999999999999999999 999999999999999999976


Q ss_pred             CCCceEEEEee---cCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEe-----------------------
Q psy15421        129 REGNVRVSREL---PGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFI-----------------------  181 (340)
Q Consensus       129 ~~~~~~~~~~~---~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~-----------------------  181 (340)
                      +.    ....+   .+|...+.++.|.+++ .+++++.|+.|++||+++++....+.                       
T Consensus       148 ~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (366)
T 3k26_A          148 DT----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD  223 (366)
T ss_dssp             TE----EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred             Ce----EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence            53    23334   6899999999998764 78899999999999998765433222                       


Q ss_pred             -----cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--------------eeEecCCCCCeEEEEEecC--CCE
Q psy15421        182 -----GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC--------------KQTFPGHESDINAVTFFPN--GWA  240 (340)
Q Consensus       182 -----~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~--------------~~~~~~h~~~v~~v~~~~~--~~~  240 (340)
                           .|...|.+++|+  ++++++++.||.|++||++++..              +..+.+|...|.+++|+|+  +.+
T Consensus       224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  301 (366)
T 3k26_A          224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKM  301 (366)
T ss_dssp             EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSE
T ss_pred             cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcE
Confidence                 388999999998  67999999999999999987643              6778889999999999999  999


Q ss_pred             EEEEeCCCcEEEEeCcCCcE----EEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCC
Q psy15421        241 FATGSDDATCRLFDIRADQE----LAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM  300 (340)
Q Consensus       241 l~s~s~d~~i~iwd~~~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~  300 (340)
                      |++|+.||.|++||+...+.    ...+....+...|++++|+|++++|++|+.||.|++||+.
T Consensus       302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            99999999999999987643    2233333224579999999999999999999999999974

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-35  Score=257.83  Aligned_cols=256  Identities=16%  Similarity=0.227  Sum_probs=222.7

Q ss_pred             eEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC-----C
Q psy15421         45 MRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD-----N  119 (340)
Q Consensus        45 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d-----~  119 (340)
                      .+...++.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+. +...+.+++|+|+++++++++.+     +
T Consensus        64 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g  142 (369)
T 3zwl_B           64 GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPG  142 (369)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCC
T ss_pred             chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCC
Confidence            34567899999999999999999999999999999999999999888887 77889999999999999999999     9


Q ss_pred             eEEEEEccCCCCceEE-------EEeecCCCc--ceEEEEEcCCC-eEEEEeCCCeEEEEECCC-CceEEEEecCCCCeE
Q psy15421        120 ICSIYSLKTREGNVRV-------SRELPGHTG--YLSCCRFLDDN-QIVTSSGDMSCALWDIET-GQQCASFIGHTGDVM  188 (340)
Q Consensus       120 ~v~i~~~~~~~~~~~~-------~~~~~~~~~--~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~  188 (340)
                      .+++|++.........       ...+..|..  .+.++.|.+++ .+++++.|+.|.+||+.+ ++....+..|...+.
T Consensus       143 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  222 (369)
T 3zwl_B          143 SINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSIS  222 (369)
T ss_dssp             EEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEE
T ss_pred             EEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCcee
Confidence            9999999865432111       123344555  78888887664 688899999999999998 677888889999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCC--------------cEEEEe
Q psy15421        189 SLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDA--------------TCRLFD  254 (340)
Q Consensus       189 ~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~--------------~i~iwd  254 (340)
                      +++|+|+++++++++.||.|++||+++++....+. +..++.+++|+|++.++++++.++              .+++||
T Consensus       223 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d  301 (369)
T 3zwl_B          223 DMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH  301 (369)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred             EEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence            99999999999999999999999999999888887 778899999999999999999998              899999


Q ss_pred             CcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCcee
Q psy15421        255 IRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTER  304 (340)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~  304 (340)
                      ..+.+.+..+..  +...|++++|+|++++|++|+.|+.|++|+..+...
T Consensus       302 ~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          302 KIFEEEIGRVQG--HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             TTTCCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred             cCCCcchhheec--ccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence            998887766542  234699999999999999999999999999876543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.7e-36  Score=273.03  Aligned_cols=243  Identities=24%  Similarity=0.374  Sum_probs=200.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCC-------CceEEEEeecCCC------------cceEEEEEcCC--
Q psy15421         96 RSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTRE-------GNVRVSRELPGHT------------GYLSCCRFLDD--  154 (340)
Q Consensus        96 ~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~-------~~~~~~~~~~~~~------------~~v~~~~~~~~--  154 (340)
                      +...|.+++|+|++.+|++|+.|+.|++|++..+.       ........+.+|.            ..|.++.|.++  
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            45789999999999999999999999999997654       2333556777898            88999999876  


Q ss_pred             -CeEEEEeCCCeEEEEECCCCceE---------------------------------------EE-EecCCCCeEEEEEc
Q psy15421        155 -NQIVTSSGDMSCALWDIETGQQC---------------------------------------AS-FIGHTGDVMSLSLA  193 (340)
Q Consensus       155 -~~l~~~~~d~~v~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~~  193 (340)
                       ..+++++.|+.|++||+.+++..                                       .. ..+|...|.+++|+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             47899999999999999764431                                       12 25799999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCC-Ceeee-------EecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCcCCcE----
Q psy15421        194 PDMRTFVSGACDASAKLWDIRD-GSCKQ-------TFPGHESDINAVTFFPNG-WAFATGSDDATCRLFDIRADQE----  260 (340)
Q Consensus       194 ~~~~~~~sg~~dg~i~~wd~~~-~~~~~-------~~~~h~~~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~~~~----  260 (340)
                      |+++++++| .|+.|++||+++ +....       .+.+|...|.+++|+|++ .+|++|+.||.|++||+++.+.    
T Consensus       187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  265 (447)
T 3dw8_B          187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH  265 (447)
T ss_dssp             TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred             CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence            999999998 899999999984 33443       356899999999999998 9999999999999999987664    


Q ss_pred             EEEeecCCc----------ccceEEEEEcCCCcEEEEEeCCCcEEEEeCCC-ceeeeeeccCCcc---------------
Q psy15421        261 LAMYSHDNI----------ICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK-TERAGILAGHDNR---------------  314 (340)
Q Consensus       261 ~~~~~~~~~----------~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~-~~~~~~~~~h~~~---------------  314 (340)
                      +..+.....          ...|.+++|+|++++|++++. +.|++||..+ ++++..+.+|...               
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~  344 (447)
T 3dw8_B          266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFD  344 (447)
T ss_dssp             CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGC
T ss_pred             eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccccc
Confidence            344432211          126999999999999999999 9999999987 7788888888642               


Q ss_pred             eEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        315 VSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       315 i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +..++|+|++.+|++|+.||.|++||
T Consensus       345 ~~~~~~s~~~~~l~s~s~dg~v~iwd  370 (447)
T 3dw8_B          345 KFECCWNGSDSVVMTGSYNNFFRMFD  370 (447)
T ss_dssp             CCCEEECTTSSEEEEECSTTEEEEEE
T ss_pred             ceEEEECCCCCEEEEeccCCEEEEEE
Confidence            33499999999999999999999996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.7e-35  Score=263.72  Aligned_cols=250  Identities=16%  Similarity=0.147  Sum_probs=209.0

Q ss_pred             EeCCCCCeeEEeeCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC-C-CeEE
Q psy15421         82 WDSYTTNKVHAIPLRSSWVMTCAYAPSG-SFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD-D-NQIV  158 (340)
Q Consensus        82 wd~~~~~~~~~~~~~~~~i~~v~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~  158 (340)
                      |+....+....+..|...|.+++|+|++ ++|++|+.|+.|++|++..+...  ......+|...|.++.|++ + ..++
T Consensus        58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~  135 (383)
T 3ei3_B           58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT--SFIQGMGPGDAITGMKFNQFNTNQLF  135 (383)
T ss_dssp             HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE--EEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred             ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc--eeeecCCcCCceeEEEeCCCCCCEEE
Confidence            3334455566778899999999999999 99999999999999999865422  2233457999999999987 4 5788


Q ss_pred             EEeCCCeEEEEECCCCceEEEEecC---CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEe
Q psy15421        159 TSSGDMSCALWDIETGQQCASFIGH---TGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFF  235 (340)
Q Consensus       159 ~~~~d~~v~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~  235 (340)
                      +++.|+.|++||+++ +....+..+   ...+.+++|+|+++++++|+.||.|++||+ +++.+..+.+|...|.+++|+
T Consensus       136 s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~  213 (383)
T 3ei3_B          136 VSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFN  213 (383)
T ss_dssp             EEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEEC
T ss_pred             EEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEEC
Confidence            999999999999986 555555544   478999999999999999999999999999 467788899999999999999


Q ss_pred             cCCC-EEEEEeCCCcEEEEeCcC----CcEEEEeecCCcccceEEEEEcC-CCcEEEEEeCCCcEEEEeCCCceeeeeec
Q psy15421        236 PNGW-AFATGSDDATCRLFDIRA----DQELAMYSHDNIICGITSVAFSR-SGRLLLAGYDDFNCNVWDSMKTERAGILA  309 (340)
Q Consensus       236 ~~~~-~l~s~s~d~~i~iwd~~~----~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~d~~i~iw~~~~~~~~~~~~  309 (340)
                      |++. ++++|+.|+.|++||+++    ...+..+.+   ...|.+++|+| ++++|++++.|+.|++||..+++....+.
T Consensus       214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  290 (383)
T 3ei3_B          214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPH---EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII  290 (383)
T ss_dssp             SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEEC---SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred             CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecC---CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence            9998 999999999999999987    555555544   34699999999 99999999999999999998887766666


Q ss_pred             cCC-----------------cceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        310 GHD-----------------NRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       310 ~h~-----------------~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +|.                 +.+..++|+|||++  +|+.|+.|+|||
T Consensus       291 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd  336 (383)
T 3ei3_B          291 IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYD  336 (383)
T ss_dssp             ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEE
T ss_pred             cccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEe
Confidence            553                 34555788888877  889999999996

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=5.1e-35  Score=249.72  Aligned_cols=277  Identities=12%  Similarity=0.150  Sum_probs=199.0

Q ss_pred             EEEEEEcCCCC---eEEEEeCCCeEEEEeCCCC---CeeEEeeCCCCcEEEEEECCCCCEEEEEe--CCCeEEEEEccCC
Q psy15421         58 IYAMHWGSDSR---NLVSASQDGKLIVWDSYTT---NKVHAIPLRSSWVMTCAYAPSGSFVACGG--LDNICSIYSLKTR  129 (340)
Q Consensus        58 v~~~~~s~~~~---~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~i~~v~~~~~~~~l~~~~--~d~~v~i~~~~~~  129 (340)
                      +.++.|-..+-   -+++++. .+|++|+..++   +++++...|..+|..+.+.||..-|++..  .=..-.++.+.-.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            55666755442   4666665 58999999998   78899999999999999999755444332  2222222322211


Q ss_pred             CC--ceEEEEeecCCCcceEEEEEcCCCeEEEEeC---CCeEEEEEC-CCCceEEEEecCCCCeEEEEEcC---CCCEEE
Q psy15421        130 EG--NVRVSRELPGHTGYLSCCRFLDDNQIVTSSG---DMSCALWDI-ETGQQCASFIGHTGDVMSLSLAP---DMRTFV  200 (340)
Q Consensus       130 ~~--~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~---d~~v~iwd~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~  200 (340)
                      ..  .........+|...+..+   ++++++.++.   |+.|++|++ ..++.+..+..|...+..++|+|   ++..++
T Consensus       121 pd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~La  197 (356)
T 2w18_A          121 SDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALL  197 (356)
T ss_dssp             -----CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEE
T ss_pred             CCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEE
Confidence            11  001111112344334332   5677776654   999999999 44888888889999999999999   779999


Q ss_pred             EEeCCCcEEEEECCCCeeeeEecCCC---CCeEEEEEecCCCEE------------EEEeCCCcEEEEeCcCCcEEEEee
Q psy15421        201 SGACDASAKLWDIRDGSCKQTFPGHE---SDINAVTFFPNGWAF------------ATGSDDATCRLFDIRADQELAMYS  265 (340)
Q Consensus       201 sg~~dg~i~~wd~~~~~~~~~~~~h~---~~v~~v~~~~~~~~l------------~s~s~d~~i~iwd~~~~~~~~~~~  265 (340)
                      +|+.|++|++||++++++++++.+|.   ..+.+++|+|+|.++            ++|+.|++|++||..+++.+..+.
T Consensus       198 SgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~  277 (356)
T 2w18_A          198 GTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVML  277 (356)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEE
T ss_pred             EecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEE
Confidence            99999999999999999999998654   367788999999876            678899999999999887765442


Q ss_pred             ---cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceE-EEEECCCCCEEEEeeCCCcEEecC
Q psy15421        266 ---HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVS-CLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       266 ---~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~-~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                         ...+...+.+..+  ++.++++|+.|++|+|||..+++++.++.+|...+. +++|||||++|+|||.|++|||||
T Consensus       278 ~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          278 YCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             ECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             eeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence               1122222333333  378999999999999999999999999999987665 689999999999999999999996

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-36  Score=275.21  Aligned_cols=258  Identities=10%  Similarity=0.111  Sum_probs=208.4

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceE
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVR  134 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~  134 (340)
                      ...|.+++|+|||+++||++.|++|+  |....+   .+.+|...|..++|+|+|       .++++.+|+.   ++...
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~---~~~~~   79 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELA---QQNGL   79 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCC---CSSCS
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeC---CCceE
Confidence            47899999999999999999999999  755554   447899999999999999       4555555543   32211


Q ss_pred             EEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCC-----CeEEEEEcCCCCEEEEEeCCCcE
Q psy15421        135 VSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTG-----DVMSLSLAPDMRTFVSGACDASA  208 (340)
Q Consensus       135 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~sg~~dg~i  208 (340)
                        ..+ .|...|.++.|++++ .+++++.||.|++||.++  .+..+. |..     .+.+++|+|+++++++|+.||+|
T Consensus        80 --~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV  153 (588)
T 2j04_A           80 --LNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL  153 (588)
T ss_dssp             --STT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred             --eec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence              111 457889999999876 588999999999999654  445555 655     49999999999999999999999


Q ss_pred             EEEECCCCee-------eeEe----cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEE---EEeecCCcccceE
Q psy15421        209 KLWDIRDGSC-------KQTF----PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL---AMYSHDNIICGIT  274 (340)
Q Consensus       209 ~~wd~~~~~~-------~~~~----~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~---~~~~~~~~~~~i~  274 (340)
                      ++||+..+..       +.++    .+|...|.+++|+|+|  +++++.|+.+++||+......   ..+.. .+...|.
T Consensus       154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~-~h~~~V~  230 (588)
T 2j04_A          154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN-ASRRKIT  230 (588)
T ss_dssp             EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC-CCSSCCC
T ss_pred             EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc-cccCcEE
Confidence            9999998752       4565    6788899999999999  889999999999999876532   23311 2224589


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEE--CCCCCEEEEeeCCCcEEecC
Q psy15421        275 SVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV--TEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       275 ~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~--s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +++|+  +++||+++ +++|++|+..+.+......+|.+.|+.++|  +||+..|++++.||+ ++|.
T Consensus       231 svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~  294 (588)
T 2j04_A          231 DLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL  294 (588)
T ss_dssp             CEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred             EEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence            99999  68999887 689999998887774444489999999999  999999999999999 9983

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=260.76  Aligned_cols=244  Identities=18%  Similarity=0.256  Sum_probs=204.7

Q ss_pred             EEeeCCCCcEEEEEECCCCCEE-EEEeC---CCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC----CeEEEEeC
Q psy15421         91 HAIPLRSSWVMTCAYAPSGSFV-ACGGL---DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD----NQIVTSSG  162 (340)
Q Consensus        91 ~~~~~~~~~i~~v~~~~~~~~l-~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~l~~~~~  162 (340)
                      .....|...|.+++|+|++..+ ++|+.   |+.|++|++.++...   .....+|...|.++.|.++    ..+++++.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~   88 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK---LLREIEKAKPIKCGTFGATSLQQRYLATGDF   88 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE---EEEEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc---ceeeecccCcEEEEEEcCCCCCCceEEEecC
Confidence            3456799999999999998655 55655   899999999765421   1222368889999999876    67999999


Q ss_pred             CCeEEEEECCCCc-eEEEEecCCCCeEEEE------EcCCCCEEEEEeCCCcEEEEECCCCe-eeeEecCCCC----CeE
Q psy15421        163 DMSCALWDIETGQ-QCASFIGHTGDVMSLS------LAPDMRTFVSGACDASAKLWDIRDGS-CKQTFPGHES----DIN  230 (340)
Q Consensus       163 d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~------~~~~~~~~~sg~~dg~i~~wd~~~~~-~~~~~~~h~~----~v~  230 (340)
                      |+.|++||+.+++ ....+.+|...+.+++      |+|+++++++|+.||.|++||++++. ....+..|.+    .+.
T Consensus        89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  168 (357)
T 3i2n_A           89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW  168 (357)
T ss_dssp             TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred             CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence            9999999999887 7888899999999995      46889999999999999999999886 6777766554    789


Q ss_pred             EEE----EecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcC---CCcEEEEEeCCCcEEEEeCCCce
Q psy15421        231 AVT----FFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSR---SGRLLLAGYDDFNCNVWDSMKTE  303 (340)
Q Consensus       231 ~v~----~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~g~~d~~i~iw~~~~~~  303 (340)
                      +++    |+|++.++++++.|+.|++||+++.+......+.   ..|.+++|+|   ++.+|++|+.|+.|++||..+.+
T Consensus       169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  245 (357)
T 3i2n_A          169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH  245 (357)
T ss_dssp             EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred             EEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence            998    6789999999999999999999988776554443   3599999999   99999999999999999988776


Q ss_pred             eeeeec-----cCCcceEEEEECCCCC-EEEEeeCCCcEEecC
Q psy15421        304 RAGILA-----GHDNRVSCLGVTEDGM-AVATGSWDSFLRIWN  340 (340)
Q Consensus       304 ~~~~~~-----~h~~~i~~~~~s~d~~-~l~s~s~D~~i~iW~  340 (340)
                      ....+.     +|...|++++|+|++. +|++|+.||.|++||
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  288 (357)
T 3i2n_A          246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK  288 (357)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred             cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence            655544     8999999999999998 899999999999996

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=7.3e-35  Score=263.85  Aligned_cols=248  Identities=23%  Similarity=0.334  Sum_probs=207.8

Q ss_pred             EEeeCCCCcEEEEEECCC-CCEEEEEeCCCeEEEEEccCCC------CceEEEEeecCCCcceEEEEEcCCC--eEEEEe
Q psy15421         91 HAIPLRSSWVMTCAYAPS-GSFVACGGLDNICSIYSLKTRE------GNVRVSRELPGHTGYLSCCRFLDDN--QIVTSS  161 (340)
Q Consensus        91 ~~~~~~~~~i~~v~~~~~-~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~  161 (340)
                      .....|...|.+++|+|+ +.++++++.++.|++|++....      +.......+.+|...+.++.|.+.+  .|++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            344567889999999997 7899999999999999997521      1123445667899999999998653  688999


Q ss_pred             CCCeEEEEECCCCce-------EEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC---eeeeEecCCCCCeE
Q psy15421        162 GDMSCALWDIETGQQ-------CASFIGHTGDVMSLSLAP-DMRTFVSGACDASAKLWDIRDG---SCKQTFPGHESDIN  230 (340)
Q Consensus       162 ~d~~v~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~~~sg~~dg~i~~wd~~~~---~~~~~~~~h~~~v~  230 (340)
                      .|+.|++||+..+..       ...+.+|...|.+++|+| ++.++++++.||.|++||++++   .....+..|...|+
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            999999999987322       345668999999999999 6788999999999999999987   46677889999999


Q ss_pred             EEEEecCCC-EEEEEeCCCcEEEEeCcC-CcEEEEeecCCcccceEEEEEcCCCc-EEEEEeCCCcEEEEeCCC------
Q psy15421        231 AVTFFPNGW-AFATGSDDATCRLFDIRA-DQELAMYSHDNIICGITSVAFSRSGR-LLLAGYDDFNCNVWDSMK------  301 (340)
Q Consensus       231 ~v~~~~~~~-~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~d~~i~iw~~~~------  301 (340)
                      +++|+|++. .+++|+.||.|++||++. .+++..+..  +...|.+++|+|+++ +|++++.|+.|++|++..      
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~  359 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS  359 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence            999999887 699999999999999987 444444432  234699999999985 799999999999999876      


Q ss_pred             --------ceeeeeeccCCcceEEEEECCCCC-EEEEeeCCCcEEecC
Q psy15421        302 --------TERAGILAGHDNRVSCLGVTEDGM-AVATGSWDSFLRIWN  340 (340)
Q Consensus       302 --------~~~~~~~~~h~~~i~~~~~s~d~~-~l~s~s~D~~i~iW~  340 (340)
                              .+.+..+.+|...|++++|+|++. +|++++.|+.|+||+
T Consensus       360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence                    255677789999999999999999 899999999999995

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-34  Score=246.47  Aligned_cols=246  Identities=20%  Similarity=0.310  Sum_probs=211.4

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCC---CeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTT---NKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICS  122 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~  122 (340)
                      .....+.+|...|.+++|+|++++|++++.|+.|++|++...   +....+..|...|.++.|  ++.++++++.|+.++
T Consensus        50 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~  127 (313)
T 3odt_A           50 WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAK  127 (313)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred             EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEE
Confidence            445678899999999999999999999999999999998754   456677889999999999  688999999999999


Q ss_pred             EEEccCCCCceEEEEeecCCCcceEEEEEcC--CCeEEEEeCCCeEEEEECCCCceEEEEec-CCCCeEEEEEcCCCCEE
Q psy15421        123 IYSLKTREGNVRVSRELPGHTGYLSCCRFLD--DNQIVTSSGDMSCALWDIETGQQCASFIG-HTGDVMSLSLAPDMRTF  199 (340)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~  199 (340)
                      +|+.  .    .....+..|...+.++.+.+  ++.+++++.|+.|++||  ..+....+.. |...+.+++|+|++. +
T Consensus       128 ~~d~--~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~  198 (313)
T 3odt_A          128 VWKE--G----SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-F  198 (313)
T ss_dssp             EEET--T----EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-E
T ss_pred             EEcC--C----cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-E
Confidence            9992  1    23455667889998888754  56899999999999999  4456666766 889999999999988 8


Q ss_pred             EEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEc
Q psy15421        200 VSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS  279 (340)
Q Consensus       200 ~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  279 (340)
                      ++++.||.|++||+++++.+..+++|..+|.+++|+|++ .+++++.||.|++||+++.+.+..+...  ...|.+++|+
T Consensus       199 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~i~~~~~~  275 (313)
T 3odt_A          199 ISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP--AISIWSVDCM  275 (313)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS--SSCEEEEEEC
T ss_pred             EEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc--CceEEEEEEc
Confidence            999999999999999999999999999999999999999 6999999999999999988877766433  2469999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCceeee
Q psy15421        280 RSGRLLLAGYDDFNCNVWDSMKTERAG  306 (340)
Q Consensus       280 ~~~~~l~~g~~d~~i~iw~~~~~~~~~  306 (340)
                      |+++ +++++.|+.|++|+..+.+...
T Consensus       276 ~~~~-~~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          276 SNGD-IIVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             TTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred             cCCC-EEEEeCCCcEEEEeCCCCceee
Confidence            9998 5679999999999988766544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.7e-34  Score=261.80  Aligned_cols=261  Identities=21%  Similarity=0.413  Sum_probs=210.5

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      +..+.+.+|.+.|.+++|  +++.|++|+.||+|++||+.+++.+..+..|...|.+++|+  +.++++|+.|+.|++|+
T Consensus       164 ~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd  239 (435)
T 1p22_A          164 ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWD  239 (435)
T ss_dssp             CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEe
Confidence            456788999999999998  78899999999999999999999999999999999999997  45999999999999999


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                      +..+.. ......+.+|...+.++.+ +++.+++++.|+.|++||+++++.+..+.+|...+.+++++  +.++++|+.|
T Consensus       240 ~~~~~~-~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~d  315 (435)
T 1p22_A          240 MASPTD-ITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSD  315 (435)
T ss_dssp             CSSSSC-CEEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETT
T ss_pred             CCCCCC-ceeeeEecCCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCC
Confidence            986543 2334567789999999988 56789999999999999999999999999999999999984  6799999999


Q ss_pred             CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCc---------EEEEeecCCcccceEEE
Q psy15421        206 ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ---------ELAMYSHDNIICGITSV  276 (340)
Q Consensus       206 g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~---------~~~~~~~~~~~~~i~~~  276 (340)
                      |.|++||+++++++..+.+|...|.+++|  ++.++++|+.||.|++||+....         .+..+.  .+...|.++
T Consensus       316 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l  391 (435)
T 1p22_A          316 NTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV--EHSGRVFRL  391 (435)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC--CCSSCCCCE
T ss_pred             CeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc--CCCCCeEEE
Confidence            99999999999999999999999999998  68899999999999999987544         444332  333468889


Q ss_pred             EEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEEC
Q psy15421        277 AFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVT  321 (340)
Q Consensus       277 ~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s  321 (340)
                      +|  ++++|++|+.||.|++||..+........ ...+..++.|.
T Consensus       392 ~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~  433 (435)
T 1p22_A          392 QF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYI  433 (435)
T ss_dssp             EE--CSSCEEECCSSSEEEEEC-----------------------
T ss_pred             Ee--CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeee
Confidence            99  78899999999999999987765443332 22344444443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.4e-35  Score=258.18  Aligned_cols=242  Identities=13%  Similarity=0.145  Sum_probs=205.3

Q ss_pred             eeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC-C-eEEEEeCCCeEEEEE
Q psy15421         93 IPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-N-QIVTSSGDMSCALWD  170 (340)
Q Consensus        93 ~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~d~~v~iwd  170 (340)
                      ...|...|.+++|+|++.+|++++.|+.|++|++..+..... .....+|...+.++.|.++ . .+++++.|+.|++||
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD-LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE-EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc-ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence            357889999999999999999999999999999987653322 2344578999999999865 5 588999999999999


Q ss_pred             C-CCCceEEEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CeeeeEecCCCCCeEEEEEecCC
Q psy15421        171 I-ETGQQCASFIG--HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRD---------GSCKQTFPGHESDINAVTFFPNG  238 (340)
Q Consensus       171 ~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~---------~~~~~~~~~h~~~v~~v~~~~~~  238 (340)
                      + .+++. ..+.+  |...|.+++|+| +..+++++.|+.|++||+++         ++++..+. |...|.+++|+|++
T Consensus        86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~  162 (342)
T 1yfq_A           86 LIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR  162 (342)
T ss_dssp             SSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE
T ss_pred             eccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc
Confidence            9 87654 67778  999999999999 99999999999999999987         66666666 88999999999987


Q ss_pred             CEEEEEeCCCcEEEEeCcC-CcEEEEeecCCcccceEEEEEcC-CCcEEEEEeCCCcEEEEeCCCc------eeeeeecc
Q psy15421        239 WAFATGSDDATCRLFDIRA-DQELAMYSHDNIICGITSVAFSR-SGRLLLAGYDDFNCNVWDSMKT------ERAGILAG  310 (340)
Q Consensus       239 ~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~d~~i~iw~~~~~------~~~~~~~~  310 (340)
                        +++++.|+.|++||++. ...........+...+.+++|+| +++++++|+.|+.+++|+....      +....+..
T Consensus       163 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  240 (342)
T 1yfq_A          163 --LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             --EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             --EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence              99999999999999987 44322112223344699999999 9999999999999999998766      66677777


Q ss_pred             CCc---------ceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        311 HDN---------RVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       311 h~~---------~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |..         .|++++|+|++.+|++|+.||.|++||
T Consensus       241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd  279 (342)
T 1yfq_A          241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence            765         999999999999999999999999996

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=7.9e-35  Score=263.62  Aligned_cols=251  Identities=15%  Similarity=0.278  Sum_probs=213.6

Q ss_pred             EEecCccCcEEEEEEcCC-CCeEEEEeCCCeEEEEeCCC----------CCeeEEeeCCCCcEEEEEECCCCC-EEEEEe
Q psy15421         49 RTLRGHLAKIYAMHWGSD-SRNLVSASQDGKLIVWDSYT----------TNKVHAIPLRSSWVMTCAYAPSGS-FVACGG  116 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~~~~i~~v~~~~~~~-~l~~~~  116 (340)
                      ..+.+|.+.|++++|+|+ +.+|++++.||.|++||+.+          .+.+..+..|...+.+++|+|++. +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            345689999999999997 67899999999999999876          566778889999999999999988 999999


Q ss_pred             CCCeEEEEEccCCCCc---eEEEEeecCCCcceEEEEEcC-C-CeEEEEeCCCeEEEEECCCC---ceEEEEecCCCCeE
Q psy15421        117 LDNICSIYSLKTREGN---VRVSRELPGHTGYLSCCRFLD-D-NQIVTSSGDMSCALWDIETG---QQCASFIGHTGDVM  188 (340)
Q Consensus       117 ~d~~v~i~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~-~-~~l~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~v~  188 (340)
                      .|+.|++|++......   ......+.+|...+.++.|.+ + ..+++++.|+.|++||++++   +....+..|...+.
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            9999999999864321   122345668999999999986 3 46888999999999999987   46677788999999


Q ss_pred             EEEEcCCCC-EEEEEeCCCcEEEEECCC-CeeeeEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCcCC-------
Q psy15421        189 SLSLAPDMR-TFVSGACDASAKLWDIRD-GSCKQTFPGHESDINAVTFFPNGW-AFATGSDDATCRLFDIRAD-------  258 (340)
Q Consensus       189 ~~~~~~~~~-~~~sg~~dg~i~~wd~~~-~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~-------  258 (340)
                      +++|+|++. ++++|+.||.|++||+++ +..+..+.+|...|.+++|+|++. .|++++.|+.|++||+...       
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  361 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE  361 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence            999999987 688999999999999998 566788889999999999999985 7999999999999999862       


Q ss_pred             -------cEEEEeecCCcccceEEEEEcCCCc-EEEEEeCCCcEEEEeCCC
Q psy15421        259 -------QELAMYSHDNIICGITSVAFSRSGR-LLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       259 -------~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~d~~i~iw~~~~  301 (340)
                             +.+.  .+..+...|.+++|+|+++ +|++++.|+.|++|+...
T Consensus       362 ~~~~~~~~~~~--~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          362 DAEDGPPELLF--IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             HHHHCCTTEEE--ECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             ccccCCcceEE--EcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence                   2222  2334445699999999999 999999999999999653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=9.3e-36  Score=266.58  Aligned_cols=279  Identities=13%  Similarity=0.179  Sum_probs=198.6

Q ss_pred             EEEEEE---cCCCCeEEEEeCCCeEEEEeCCCCC----------eeEEee-------------------CCCCcEEEEEE
Q psy15421         58 IYAMHW---GSDSRNLVSASQDGKLIVWDSYTTN----------KVHAIP-------------------LRSSWVMTCAY  105 (340)
Q Consensus        58 v~~~~~---s~~~~~l~s~~~d~~i~iwd~~~~~----------~~~~~~-------------------~~~~~i~~v~~  105 (340)
                      -+++.|   +++...+++++.|+.|++|+.....          .+....                   .|........+
T Consensus        18 p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (393)
T 4gq1_A           18 PYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSS   97 (393)
T ss_dssp             EEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------C
T ss_pred             CeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeec
Confidence            345556   4555667777788899999753211          011111                   11122223344


Q ss_pred             CCCCCEEEEEeCCCeEEEEEccCCCCce-EEEEeecCCCcceEEEEEcC---------CCeEEEEeCCCeEEEEECCCCc
Q psy15421        106 APSGSFVACGGLDNICSIYSLKTREGNV-RVSRELPGHTGYLSCCRFLD---------DNQIVTSSGDMSCALWDIETGQ  175 (340)
Q Consensus       106 ~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~---------~~~l~~~~~d~~v~iwd~~~~~  175 (340)
                      ++++.++++++.|++|++|+...++... .....+.+|...|.++.|.+         +..|++++.|++|++||+.++.
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~  177 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG  177 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence            5567789999999999999998654221 23345679999999999964         3468899999999999999988


Q ss_pred             eEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeeeE-------------------------ecCCCCCe
Q psy15421        176 QCASFIGHTGDVMSLSLAPDMR-TFVSGACDASAKLWDIRDGSCKQT-------------------------FPGHESDI  229 (340)
Q Consensus       176 ~~~~~~~~~~~v~~~~~~~~~~-~~~sg~~dg~i~~wd~~~~~~~~~-------------------------~~~h~~~v  229 (340)
                      .+..+..|...+.+++|+|++. ++++|+.||+|++||+++++....                         ..+|...+
T Consensus       178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v  257 (393)
T 4gq1_A          178 PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL  257 (393)
T ss_dssp             EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred             eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence            8888889999999999999875 799999999999999987754321                         13577788


Q ss_pred             EEEEEe-cCCCEEEEEeCCCcEEEEeCcCCcEEEEeec-CC---------------cccceEEEEEcC--CCcEEEEEeC
Q psy15421        230 NAVTFF-PNGWAFATGSDDATCRLFDIRADQELAMYSH-DN---------------IICGITSVAFSR--SGRLLLAGYD  290 (340)
Q Consensus       230 ~~v~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~---------------~~~~i~~~~~s~--~~~~l~~g~~  290 (340)
                      .++.|+ |++..+++++.|+.+++||+...+....+.. ..               .........|+|  ++.++++|+.
T Consensus       258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~  337 (393)
T 4gq1_A          258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ  337 (393)
T ss_dssp             SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT
T ss_pred             eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC
Confidence            899987 7999999999999999999876543322210 00               000112234444  4557788899


Q ss_pred             CCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcE
Q psy15421        291 DFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFL  336 (340)
Q Consensus       291 d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i  336 (340)
                      |++|++||..+++....+.+|..+|.+++|||||++||+++.||.+
T Consensus       338 Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~  383 (393)
T 4gq1_A          338 HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVL  383 (393)
T ss_dssp             TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred             CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            9999999999998888888999999999999999999999988764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-35  Score=281.59  Aligned_cols=248  Identities=16%  Similarity=0.247  Sum_probs=209.0

Q ss_pred             EEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC---CCeEEEEeCCCeEE
Q psy15421         91 HAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD---DNQIVTSSGDMSCA  167 (340)
Q Consensus        91 ~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~l~~~~~d~~v~  167 (340)
                      ..+.+|...|.+++|+|+++++++|+.|+.|++|++..+  .......+.+|...|.++.|.+   +..+++++.||.|+
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~--~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT--EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC--CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            356789999999999999999999999999999998743  2345567789999999999964   45789999999999


Q ss_pred             EEECCCCc--eEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe--eeeEecCCCCCeEEEEEec-----
Q psy15421        168 LWDIETGQ--QCASFIGHTGDVMSLSLAPD--MRTFVSGACDASAKLWDIRDGS--CKQTFPGHESDINAVTFFP-----  236 (340)
Q Consensus       168 iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~sg~~dg~i~~wd~~~~~--~~~~~~~h~~~v~~v~~~~-----  236 (340)
                      +||+.+++  ....+.+|...|.+++|+|+  +..+++|+.||.|++||++++.  ....+.+|...|.+++|+|     
T Consensus        81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~  160 (753)
T 3jro_A           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (753)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence            99999886  66777889999999999999  9999999999999999998873  3456678999999999999     


Q ss_pred             --------CCCEEEEEeCCCcEEEEeCcCCcEEE--EeecCCcccceEEEEEcCC---CcEEEEEeCCCcEEEEeCCCce
Q psy15421        237 --------NGWAFATGSDDATCRLFDIRADQELA--MYSHDNIICGITSVAFSRS---GRLLLAGYDDFNCNVWDSMKTE  303 (340)
Q Consensus       237 --------~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~~~~~~~i~~~~~s~~---~~~l~~g~~d~~i~iw~~~~~~  303 (340)
                              ++.++++|+.||.|++||++......  ......+...|++++|+|+   +++|++|+.||.|++||..+++
T Consensus       161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred             ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence                    58999999999999999998763221  1112334457999999999   9999999999999999987753


Q ss_pred             -----eeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        304 -----RAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       304 -----~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                           ......+|.+.|++++|+|+|.+|++|+.||.|++||
T Consensus       241 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd  282 (753)
T 3jro_A          241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (753)
T ss_dssp             SCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred             CcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence                 3344556899999999999999999999999999996

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.2e-33  Score=255.52  Aligned_cols=283  Identities=11%  Similarity=0.087  Sum_probs=232.4

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeE-----EeeCCCCcEEEEEECCCCCEEEEEeCCCeE
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVH-----AIPLRSSWVMTCAYAPSGSFVACGGLDNIC  121 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v  121 (340)
                      ....+..+. .+.+++|+|++.++++++.|+.|++||..+++...     .+..|...+.+++|+|++.++++++.|+.+
T Consensus       115 ~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v  193 (433)
T 3bws_A          115 FISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAV  193 (433)
T ss_dssp             EEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEE
T ss_pred             EEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEE
Confidence            334455543 45699999977788888889999999999988776     344778899999999999999999999999


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEE-EEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEE
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIV-TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTF  199 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  199 (340)
                      ++|++.++.    ....+..|...+.++.|.+++ .++ +++.|+.|.+||+++++....+..+ ..+.+++|+|+++.+
T Consensus       194 ~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l  268 (433)
T 3bws_A          194 HVFDLKTLA----YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKEL  268 (433)
T ss_dssp             EEEETTTCC----EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEE
T ss_pred             EEEECCCce----EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEE
Confidence            999987643    334556788889999998765 453 4457999999999998877666543 458999999999999


Q ss_pred             EEEe--------CCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCcCCcEEEEeecCCcc
Q psy15421        200 VSGA--------CDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGW-AFATGSDDATCRLFDIRADQELAMYSHDNII  270 (340)
Q Consensus       200 ~sg~--------~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~  270 (340)
                      ++++        .||.|++||+++++....+ .|...+.+++|+|+++ .+++++.|+.|++||+.+.+.+..+.+.   
T Consensus       269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---  344 (433)
T 3bws_A          269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF---  344 (433)
T ss_dssp             EEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS---
T ss_pred             EEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC---
Confidence            8887        5899999999998876665 3566889999999996 4577789999999999988777666533   


Q ss_pred             cceEEEEEcCCCcEEEEEeC---------------CCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeC-CC
Q psy15421        271 CGITSVAFSRSGRLLLAGYD---------------DFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSW-DS  334 (340)
Q Consensus       271 ~~i~~~~~s~~~~~l~~g~~---------------d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~-D~  334 (340)
                      ..+.+++|+|++++|++++.               ||.|++||..+++.+..+.. ...+.+++|+|||++|++++. |+
T Consensus       345 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~  423 (433)
T 3bws_A          345 DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDH  423 (433)
T ss_dssp             SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTT
T ss_pred             CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCC
Confidence            35889999999999988876               57999999999988887765 467899999999999988775 99


Q ss_pred             cEEecC
Q psy15421        335 FLRIWN  340 (340)
Q Consensus       335 ~i~iW~  340 (340)
                      .|++|+
T Consensus       424 ~i~v~~  429 (433)
T 3bws_A          424 QIRVYR  429 (433)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            999996

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-35  Score=268.55  Aligned_cols=250  Identities=8%  Similarity=0.104  Sum_probs=207.1

Q ss_pred             CccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCC-----cEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         53 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSS-----WVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        53 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      +|.+.|.+++|+|+|.+||+++.||+|+|||...  .+..+. |..     .+.+++|+|+|++||+|+.||+|++|++.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            6688899999999999999999999999999544  555555 554     49999999999999999999999999997


Q ss_pred             CCCC---ceEEEEee----cCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCce---EEEEe-cCCCCeEEEEEcCCC
Q psy15421        128 TREG---NVRVSREL----PGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQ---CASFI-GHTGDVMSLSLAPDM  196 (340)
Q Consensus       128 ~~~~---~~~~~~~~----~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~-~~~~~v~~~~~~~~~  196 (340)
                      .+..   ......++    .+|...|.++.|++++ +++++.|++|++||+..++.   ...+. +|...|.+++|+  +
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g  236 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D  236 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C
Confidence            6532   11123444    6788899999999998 99999999999999988773   34563 788899999999  5


Q ss_pred             CEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEE--ecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceE
Q psy15421        197 RTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTF--FPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGIT  274 (340)
Q Consensus       197 ~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~--~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~  274 (340)
                      +.+++++ +++|++||+..++......+|...+..++|  +|++..+++++.||. ++|...                  
T Consensus       237 ~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d------------------  296 (588)
T 2j04_A          237 YKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED------------------  296 (588)
T ss_dssp             TEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS------------------
T ss_pred             CEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec------------------
Confidence            7888886 799999999988764333389999999999  999999999999999 999876                  


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeC
Q psy15421        275 SVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSW  332 (340)
Q Consensus       275 ~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~  332 (340)
                      .+.|+|++.++++.  |+++++|+.... .+..+.+ ...|++++|||||+.+|+++.
T Consensus       297 ~~~~spd~~l~a~~--d~~v~lW~~~g~-~l~~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          297 ELHVTADNIIAPYL--EKKFKKWSTIWN-EFNNYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             SEEEECCCSSHHHH--HHHHHHTTTTTT-SSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             cEEECCCceEEEEc--CCEEEEEECCCC-ceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence            14589999888775  999999986433 3445544 677999999999999998874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.4e-34  Score=253.81  Aligned_cols=244  Identities=12%  Similarity=0.094  Sum_probs=192.2

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEE-----------eCCCeEEEEeCCCCCee-E---Ee-----eCCCCcEEEEEECCC
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSA-----------SQDGKLIVWDSYTTNKV-H---AI-----PLRSSWVMTCAYAPS  108 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~-----------~~d~~i~iwd~~~~~~~-~---~~-----~~~~~~i~~v~~~~~  108 (340)
                      ..|.+|.+.|.+++++  ++.+++|           +.|+++++|++.+.+.. .   ..     ..+...+.+++|+||
T Consensus        67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD  144 (365)
T 4h5i_A           67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE  144 (365)
T ss_dssp             EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred             EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence            4678999999988765  4456555           45788999987654321 1   11     123456889999999


Q ss_pred             CCEEEEE--eCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEE--EecCC
Q psy15421        109 GSFVACG--GLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCAS--FIGHT  184 (340)
Q Consensus       109 ~~~l~~~--~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~--~~~~~  184 (340)
                      |++++++  +.|++|++||+.++.    ....+ .|...|.++.|++++.+++.+.++.+.+|+..+++....  ...|.
T Consensus       145 g~~la~as~~~d~~i~iwd~~~~~----~~~~~-~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~  219 (365)
T 4h5i_A          145 GTVAAIASSKVPAIMRIIDPSDLT----EKFEI-ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKN  219 (365)
T ss_dssp             SSCEEEEESCSSCEEEEEETTTTE----EEEEE-ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTT
T ss_pred             CCEEEEEECCCCCEEEEeECCCCc----EEEEe-CCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCC
Confidence            9998654  478999999997653    22333 367789999999888766666677788888877776543  34588


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCC----cEEEEECCCCee----eeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCc
Q psy15421        185 GDVMSLSLAPDMRTFVSGACDA----SAKLWDIRDGSC----KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIR  256 (340)
Q Consensus       185 ~~v~~~~~~~~~~~~~sg~~dg----~i~~wd~~~~~~----~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  256 (340)
                      ..+.+++|+|+++.+++++.|+    .+++|++.....    ...+.+|..+|++++|+|+|++||+|+.|++|+|||+.
T Consensus       220 ~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~  299 (365)
T 4h5i_A          220 WSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLK  299 (365)
T ss_dssp             EEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred             CCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECC
Confidence            8899999999999999999887    688899876653    34567899999999999999999999999999999999


Q ss_pred             CCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCC
Q psy15421        257 ADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM  300 (340)
Q Consensus       257 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~  300 (340)
                      +++++..+. ..+...|++++|+|||++||+|+.|++|+||++.
T Consensus       300 ~~~~~~~~~-~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          300 DLSMSKIFK-QAHSFAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             TTEEEEEET-TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             CCcEEEEec-CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            988876542 2344579999999999999999999999999974

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.7e-34  Score=256.86  Aligned_cols=250  Identities=17%  Similarity=0.241  Sum_probs=209.3

Q ss_pred             EEecCccCcEEEEEEcC-CCCeEEEEeCCCeEEEEeCCCC-------CeeEEeeCCCCcEEEEEECCCC-CEEEEEeCCC
Q psy15421         49 RTLRGHLAKIYAMHWGS-DSRNLVSASQDGKLIVWDSYTT-------NKVHAIPLRSSWVMTCAYAPSG-SFVACGGLDN  119 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~i~~v~~~~~~-~~l~~~~~d~  119 (340)
                      ..+.+|.+.|++++|+| ++++|++|+.||+|++||+.++       +.+..+..|...|.+++|+|++ .+|++++.|+
T Consensus        75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg  154 (402)
T 2aq5_A           75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN  154 (402)
T ss_dssp             CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred             ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence            45789999999999999 8999999999999999999887       5677888999999999999998 7999999999


Q ss_pred             eEEEEEccCCCCceEEEEee--cCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEE-ecCCCC-eEEEEEcC
Q psy15421        120 ICSIYSLKTREGNVRVSREL--PGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASF-IGHTGD-VMSLSLAP  194 (340)
Q Consensus       120 ~v~i~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~~-v~~~~~~~  194 (340)
                      .|++||+.++.    ....+  .+|...+.++.|++++ .|++++.|+.|++||+++++.+..+ ..|.+. +.+++|+|
T Consensus       155 ~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (402)
T 2aq5_A          155 VILVWDVGTGA----AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS  230 (402)
T ss_dssp             CEEEEETTTTE----EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS
T ss_pred             EEEEEECCCCC----ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC
Confidence            99999997653    34455  7899999999998764 6889999999999999999988888 678776 89999999


Q ss_pred             CCCEEEEE---eCCCcEEEEECCCCee-eeEe-cCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEeCcCCcE-EEEeecC
Q psy15421        195 DMRTFVSG---ACDASAKLWDIRDGSC-KQTF-PGHESDINAVTFFPNGWAFA-TGSDDATCRLFDIRADQE-LAMYSHD  267 (340)
Q Consensus       195 ~~~~~~sg---~~dg~i~~wd~~~~~~-~~~~-~~h~~~v~~v~~~~~~~~l~-s~s~d~~i~iwd~~~~~~-~~~~~~~  267 (340)
                      ++.++++|   +.|+.|++||++++.. .... ..|...+.+++|+|++.+++ +|+.|+.|++||+.+.++ +..+...
T Consensus       231 ~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~  310 (402)
T 2aq5_A          231 EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF  310 (402)
T ss_dssp             TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE
T ss_pred             CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc
Confidence            99999999   7999999999988654 2222 24677899999999999886 455799999999997763 3333222


Q ss_pred             CcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCcee
Q psy15421        268 NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTER  304 (340)
Q Consensus       268 ~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~  304 (340)
                      .....+.+++|+|++.++++  .++.+++|++.+...
T Consensus       311 ~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          311 SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             ccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence            23356899999999998875  566899999876543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=9.8e-33  Score=239.01  Aligned_cols=246  Identities=15%  Similarity=0.302  Sum_probs=206.4

Q ss_pred             EecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q psy15421         50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTR  129 (340)
Q Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~  129 (340)
                      .+.+|...|.+++|+|++++|++|+.||+|++||+.+++.+..+..|...+.++  ++++.++++++.++.+++|+....
T Consensus        62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~  139 (318)
T 4ggc_A           62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVA  139 (318)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--EEETTEEEEEETTSEEEEEETTSS
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEe--ecCCCEEEEEecCCceEeeecCCC
Confidence            345788999999999999999999999999999999999999999998877664  556789999999999999998664


Q ss_pred             CCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCce----EEEEecCCCCeEEEEEcCCCCEE---EE
Q psy15421        130 EGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQ----CASFIGHTGDVMSLSLAPDMRTF---VS  201 (340)
Q Consensus       130 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~---~s  201 (340)
                      ..   ....+.+|...+..+.+.+. ..+++++.|+.|++||+++++.    ......+.+.+.+++++|++..+   ++
T Consensus       140 ~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  216 (318)
T 4ggc_A          140 EH---HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG  216 (318)
T ss_dssp             SC---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE
T ss_pred             ce---eEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe
Confidence            42   34556789999998888765 4688999999999999987653    34556688889999999977643   36


Q ss_pred             EeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEe--CCCcEEEEeCcCCcEEEEeecCCcccceEEEEEc
Q psy15421        202 GACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGS--DDATCRLFDIRADQELAMYSHDNIICGITSVAFS  279 (340)
Q Consensus       202 g~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  279 (340)
                      ++.+++|++||.+......... +...+..+.|+|++..+++++  .|+.|++||+.+++++..+.  .+...|++++|+
T Consensus       217 ~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~--gH~~~V~~l~~s  293 (318)
T 4ggc_A          217 GTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMS  293 (318)
T ss_dssp             CTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--CCSSCEEEEEEC
T ss_pred             cCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEc
Confidence            7789999999999887665554 667899999999998887655  79999999999988887764  334579999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCce
Q psy15421        280 RSGRLLLAGYDDFNCNVWDSMKTE  303 (340)
Q Consensus       280 ~~~~~l~~g~~d~~i~iw~~~~~~  303 (340)
                      |++++|++|+.|++|++||+.+.+
T Consensus       294 pdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          294 PDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             TTSSCEEEEETTTEEEEECCSCCC
T ss_pred             CCCCEEEEEecCCeEEEEECCCCC
Confidence            999999999999999999986543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.1e-34  Score=260.05  Aligned_cols=248  Identities=17%  Similarity=0.119  Sum_probs=194.8

Q ss_pred             eEEeeCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC--CCeEEEEeCCCeE
Q psy15421         90 VHAIPLRSSWVMTCAYAP-SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD--DNQIVTSSGDMSC  166 (340)
Q Consensus        90 ~~~~~~~~~~i~~v~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~v  166 (340)
                      ......|...|++++|+| ++++||+|+.||.|+|||+..++..  ....+.+|...|.++.|++  ++.|++++.|++|
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~--~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v  189 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP--TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT  189 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC--EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce--eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence            345567788899999999 5779999999999999999765433  2345678999999999975  4579999999999


Q ss_pred             EEEECCCCceEEEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCC-EEEE
Q psy15421        167 ALWDIETGQQCASFIG--HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGW-AFAT  243 (340)
Q Consensus       167 ~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s  243 (340)
                      ++||++++........  +...+.+++|+|+++++++|+.||.|++||++. +.+..+.+|...|++++|+|++. ++++
T Consensus       190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s  268 (435)
T 4e54_B          190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLAT  268 (435)
T ss_dssp             EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEE
T ss_pred             EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEE
Confidence            9999987543332222  334578999999999999999999999999864 55678889999999999999875 7889


Q ss_pred             EeCCCcEEEEeCcCCcEEEEe-ecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCc------ceE
Q psy15421        244 GSDDATCRLFDIRADQELAMY-SHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDN------RVS  316 (340)
Q Consensus       244 ~s~d~~i~iwd~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~------~i~  316 (340)
                      |+.|+.|++||++..+....+ ....+...|++++|+|++++|++|+.|+.|++|+..+++....+.+|..      .+.
T Consensus       269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  348 (435)
T 4e54_B          269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPI  348 (435)
T ss_dssp             EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCC
T ss_pred             ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeE
Confidence            999999999999865443222 1123345699999999999999999999999999998887776666643      123


Q ss_pred             EEEECCCCCEEEEee------------CCCcEEecC
Q psy15421        317 CLGVTEDGMAVATGS------------WDSFLRIWN  340 (340)
Q Consensus       317 ~~~~s~d~~~l~s~s------------~D~~i~iW~  340 (340)
                      .+.|+|++.++++++            .+++|++||
T Consensus       349 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd  384 (435)
T 4e54_B          349 KAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFD  384 (435)
T ss_dssp             BCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEEC
T ss_pred             EEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEE
Confidence            345666666655543            346799996

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.7e-32  Score=243.46  Aligned_cols=261  Identities=15%  Similarity=0.184  Sum_probs=216.5

Q ss_pred             CeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEE-EEEeCCCeEEEEEccCCCCceEEEEeecCCCcce
Q psy15421         68 RNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFV-ACGGLDNICSIYSLKTREGNVRVSRELPGHTGYL  146 (340)
Q Consensus        68 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v  146 (340)
                      ..+++++.|+.|++||+.+++.+..+..|.. +.+++|+|+++++ ++++.|+.|++|++.+++    ....+..+. .+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~----~~~~~~~~~-~v   76 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN----VIATVPAGS-SP   76 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTE----EEEEEECSS-SE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCe----EEEEEECCC-Cc
Confidence            3678899999999999999988888887754 8999999999987 667799999999987653    233344444 78


Q ss_pred             EEEEEcCCCe-EE-EEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeeeEec
Q psy15421        147 SCCRFLDDNQ-IV-TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTF-VSGACDASAKLWDIRDGSCKQTFP  223 (340)
Q Consensus       147 ~~~~~~~~~~-l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~sg~~dg~i~~wd~~~~~~~~~~~  223 (340)
                      .++.|++++. ++ ++..++.|.+||+.+++....+..+ ..+.+++|+|+++.+ ++++.|+.|++||+++++....+.
T Consensus        77 ~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  155 (391)
T 1l0q_A           77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS  155 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe
Confidence            8888987654 54 4456799999999999887776644 568999999999977 688889999999999999888887


Q ss_pred             CCCCCeEEEEEecCCCEE-EEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEe---CCCcEEEEeC
Q psy15421        224 GHESDINAVTFFPNGWAF-ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY---DDFNCNVWDS  299 (340)
Q Consensus       224 ~h~~~v~~v~~~~~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~---~d~~i~iw~~  299 (340)
                      .+ ..+.+++|+|+++++ ++++.|+.|++||+++.+....+.+..   .+.+++|+|++++|++++   .++.|++||.
T Consensus       156 ~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~  231 (391)
T 1l0q_A          156 VG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDT  231 (391)
T ss_dssp             CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---EEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred             cC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC---CccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence            65 457999999999877 677889999999999887776665433   478999999999999888   6899999999


Q ss_pred             CCceeeeeeccCCcceEEEEECCCCCEE-EEeeCCCcEEecC
Q psy15421        300 MKTERAGILAGHDNRVSCLGVTEDGMAV-ATGSWDSFLRIWN  340 (340)
Q Consensus       300 ~~~~~~~~~~~h~~~i~~~~~s~d~~~l-~s~s~D~~i~iW~  340 (340)
                      .+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||
T Consensus       232 ~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d  272 (391)
T 1l0q_A          232 GTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVID  272 (391)
T ss_dssp             TTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence            9998888887765 57899999999877 6788999999996

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6.2e-33  Score=248.27  Aligned_cols=279  Identities=18%  Similarity=0.241  Sum_probs=198.3

Q ss_pred             cCccCcEEEEEEcC-CCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCC---CCEEEEEeCCCeEEEEEcc
Q psy15421         52 RGHLAKIYAMHWGS-DSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS---GSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        52 ~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~---~~~l~~~~~d~~v~i~~~~  127 (340)
                      .+|...|.+++|+| ++.+|++++.|+.|++||+.+++....+. +...+.++.+.|.   +.++++++.++.+++|++.
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  174 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK  174 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence            36999999999999 77899999999999999999888777766 5677889999884   4599999999999999997


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCC--eEEEEeCCCeEEEEECCCCc-eEEEE---------------ecCCCCeEE
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDN--QIVTSSGDMSCALWDIETGQ-QCASF---------------IGHTGDVMS  189 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~-~~~~~---------------~~~~~~v~~  189 (340)
                      ++.    ....+.+|...+.++.|.+++  .+++++.|+.|++||++.+. ....+               ..|...+.+
T Consensus       175 ~~~----~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  250 (408)
T 4a11_B          175 SGS----CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG  250 (408)
T ss_dssp             SSC----CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred             Ccc----eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence            653    234567899999999998765  37899999999999998765 23333               468889999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCC-----CCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEe
Q psy15421        190 LSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE-----SDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMY  264 (340)
Q Consensus       190 ~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~-----~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  264 (340)
                      ++|+|+++++++++.||.|++||+++++....+..+.     ..+........+..++.++.|+.|++||+.+.+.+..+
T Consensus       251 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~  330 (408)
T 4a11_B          251 LCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML  330 (408)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE
T ss_pred             EEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee
Confidence            9999999999999999999999999887654443221     11222222334556777788999999999988887766


Q ss_pred             ecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECC-CCCEEEEeeCCCcEEecC
Q psy15421        265 SHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTE-DGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       265 ~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~-d~~~l~s~s~D~~i~iW~  340 (340)
                      .  .+...|++++|+|++++|++|+.||.|++|+..+.+.+.....+...   ..+.+ +...+.+++.|+.+++|+
T Consensus       331 ~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~  402 (408)
T 4a11_B          331 K--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWS  402 (408)
T ss_dssp             C--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------
T ss_pred             c--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecC
Confidence            4  23356999999999999999999999999999888766544333222   22333 334566788899999995

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=9.9e-33  Score=243.43  Aligned_cols=254  Identities=14%  Similarity=0.205  Sum_probs=208.4

Q ss_pred             EEeCCCCCeeEEeeCCCCcEEEEEECCC---CCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-e
Q psy15421         81 VWDSYTTNKVHAIPLRSSWVMTCAYAPS---GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-Q  156 (340)
Q Consensus        81 iwd~~~~~~~~~~~~~~~~i~~v~~~~~---~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~  156 (340)
                      .|+....+.+..+..|...|.+++|+|+   |++|++|+.|+.|++|++.+...  .....+.+|...|.++.|++++ .
T Consensus        23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~  100 (368)
T 3mmy_A           23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ--TIPKAQQMHTGPVLDVCWSDDGSK  100 (368)
T ss_dssp             CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC--EEEEEEEECSSCEEEEEECTTSSE
T ss_pred             cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc--eeEEEeccccCCEEEEEECcCCCE
Confidence            3455666677788899999999999999   69999999999999999976332  2335667899999999998765 6


Q ss_pred             EEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEE
Q psy15421        157 IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSL--APDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTF  234 (340)
Q Consensus       157 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~  234 (340)
                      |++++.|+.|++||+.+++... +..|...+.+++|  +|++.++++++.||.|++||+++++++..+..|. .+.++.+
T Consensus       101 l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~  178 (368)
T 3mmy_A          101 VFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADV  178 (368)
T ss_dssp             EEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEE
T ss_pred             EEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEe
Confidence            8899999999999999887655 6679999999999  8999999999999999999999999888888664 5666666


Q ss_pred             ecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcE----EEEEeCCCcEEEEeCCCc---eeeee
Q psy15421        235 FPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRL----LLAGYDDFNCNVWDSMKT---ERAGI  307 (340)
Q Consensus       235 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~----l~~g~~d~~i~iw~~~~~---~~~~~  307 (340)
                      .+  ..+++++.++.+++|+++................+.++.+.++...    +++|+.|+.|++|+....   .....
T Consensus       179 ~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~  256 (368)
T 3mmy_A          179 IY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFT  256 (368)
T ss_dssp             ET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEE
T ss_pred             cC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccccee
Confidence            64  4889999999999999987654433322222334566666655544    999999999999998776   45666


Q ss_pred             eccCCc------------ceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        308 LAGHDN------------RVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       308 ~~~h~~------------~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +.+|..            .|++++|+|++++|++|+.||.|++||
T Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd  301 (368)
T 3mmy_A          257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWD  301 (368)
T ss_dssp             EECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             eeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEE
Confidence            777766            799999999999999999999999996

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.8e-33  Score=241.65  Aligned_cols=209  Identities=21%  Similarity=0.318  Sum_probs=177.4

Q ss_pred             EeEEecCccCcEEEEEEcC--CCCeEEEEeCCCeEEEEeCCCCC--eeEEeeCCCCcEEEEEECCC--CCEEEEEeCCCe
Q psy15421         47 TRRTLRGHLAKIYAMHWGS--DSRNLVSASQDGKLIVWDSYTTN--KVHAIPLRSSWVMTCAYAPS--GSFVACGGLDNI  120 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~~~--~~~l~~~~~d~~  120 (340)
                      ...+|++|.+.|++++|++  ++++|+||+.|++|++||+.+++  ....+..|...|.+++|+|+  +.+|++|+.|++
T Consensus        49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~  128 (316)
T 3bg1_A           49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA  128 (316)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred             EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence            3467899999999999986  48999999999999999998763  55677889999999999998  889999999999


Q ss_pred             EEEEEccCCCCceEEEEeecCCCcceEEEEEcCC------------------CeEEEEeCCCeEEEEECCCC---ceEEE
Q psy15421        121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD------------------NQIVTSSGDMSCALWDIETG---QQCAS  179 (340)
Q Consensus       121 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~l~~~~~d~~v~iwd~~~~---~~~~~  179 (340)
                      |++|++..+. .......+.+|...+.++.|.++                  ..|++++.|+.|++||++..   +....
T Consensus       129 i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~  207 (316)
T 3bg1_A          129 ISLLTYTGEG-QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK  207 (316)
T ss_dssp             EEEEEECSSS-CEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC
T ss_pred             EEEEecCCCC-CcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeee
Confidence            9999987542 22233456788888888888764                  46899999999999999755   35667


Q ss_pred             EecCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEECCCC---e-eeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q psy15421        180 FIGHTGDVMSLSLAPDM----RTFVSGACDASAKLWDIRDG---S-CKQTFPGHESDINAVTFFPNGWAFATGSDDATCR  251 (340)
Q Consensus       180 ~~~~~~~v~~~~~~~~~----~~~~sg~~dg~i~~wd~~~~---~-~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~  251 (340)
                      +.+|...|.+++|+|++    .++++|+.||+|++||+++.   . ....+..|...|.+++|+|++.+||+++.|+.|+
T Consensus       208 l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~  287 (316)
T 3bg1_A          208 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVT  287 (316)
T ss_dssp             CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEE
T ss_pred             cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEE
Confidence            78899999999999986    78999999999999998762   1 2234567889999999999999999999999999


Q ss_pred             EEeCc
Q psy15421        252 LFDIR  256 (340)
Q Consensus       252 iwd~~  256 (340)
                      +|+..
T Consensus       288 lw~~~  292 (316)
T 3bg1_A          288 LWKES  292 (316)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99975

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-33  Score=244.87  Aligned_cols=226  Identities=11%  Similarity=0.093  Sum_probs=177.2

Q ss_pred             ECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECC---------CCc
Q psy15421        105 YAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIE---------TGQ  175 (340)
Q Consensus       105 ~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~---------~~~  175 (340)
                      +.+++.++++|+.|+.|++||+.++.......      ...+..+.+.+.  +++++.|++|++|+..         +++
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~------~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~  115 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT------TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNK  115 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE------EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe------cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcc
Confidence            44678899999999999999998764322221      233444445444  8899999999999665         444


Q ss_pred             eEEEEe-cCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeeeeEec-CCCCCeEEEEEecCCCEEEEEeCCCcEE
Q psy15421        176 QCASFI-GHTGDVMSLSLAP--DMRTFVSGACDASAKLWDIRDGSCKQTFP-GHESDINAVTFFPNGWAFATGSDDATCR  251 (340)
Q Consensus       176 ~~~~~~-~~~~~v~~~~~~~--~~~~~~sg~~dg~i~~wd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~s~d~~i~  251 (340)
                      .+..+. +|.+.|.+++|+|  +++++++|+.||+|++||++++++..... .|...+.+++|+|++.+|++|+.||.|+
T Consensus       116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~  195 (343)
T 3lrv_A          116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD  195 (343)
T ss_dssp             EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred             eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence            444444 6778899999999  99999999999999999999998866664 4556899999999999999999999999


Q ss_pred             EEeCcCCcEE-EEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeecc---CCcceE--EEEECCCCC
Q psy15421        252 LFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAG---HDNRVS--CLGVTEDGM  325 (340)
Q Consensus       252 iwd~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~---h~~~i~--~~~~s~d~~  325 (340)
                      +||+++.+.+ ..+.. .+..+|++++|+|++.+|++++++ .|++||+.+.+....+..   |...+.  +++|+|+|+
T Consensus       196 iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  273 (343)
T 3lrv_A          196 VYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK  273 (343)
T ss_dssp             EEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS
T ss_pred             EEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeecccccccccccceEEEECCCCC
Confidence            9999988765 44432 234579999999999999999955 999999988776554443   545555  699999999


Q ss_pred             EEEEeeC-CCcEEecC
Q psy15421        326 AVATGSW-DSFLRIWN  340 (340)
Q Consensus       326 ~l~s~s~-D~~i~iW~  340 (340)
                      +|++++. |+.|+||+
T Consensus       274 ~l~~~s~~d~~i~v~~  289 (343)
T 3lrv_A          274 NMIAYSNESNSLTIYK  289 (343)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EEEEecCCCCcEEEEE
Confidence            9999999 99999994

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2e-32  Score=241.62  Aligned_cols=242  Identities=14%  Similarity=0.087  Sum_probs=176.0

Q ss_pred             EEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeE-E
Q psy15421         81 VWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQI-V  158 (340)
Q Consensus        81 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l-~  158 (340)
                      ||+..+.+.+.....|...|.+++|+|++++|++|+.++ +++|+.....    .......+  .+..+.+... +.+ +
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~   75 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA----HIMSQEMR--HLSKVRMLHRTNYVAF   75 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE----EEEEEECS--CCCEEEECTTSSEEEE
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc----eeeeeecC--CeEEEEEcCCCCEEEE
Confidence            455566666667788999999999999999999988775 6899986432    11111111  2444555433 444 5


Q ss_pred             EEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeeeEecCCCCCeEEEEEecC
Q psy15421        159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG-SCKQTFPGHESDINAVTFFPN  237 (340)
Q Consensus       159 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~-~~~~~~~~h~~~v~~v~~~~~  237 (340)
                      +++.|+.|++||+.+++.+..+. +...+.+++++++.  +++ ..|+.|++||++++ +.+..+..   +...+++++ 
T Consensus        76 ~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-  147 (355)
T 3vu4_A           76 VTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVV-SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-  147 (355)
T ss_dssp             ECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEE-EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-
T ss_pred             EECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEE-EEcCEEEEEECCCCceeeEEecc---CCceEEEEc-
Confidence            67788999999999999888776 66789999998864  333 34889999999988 66655554   444566777 


Q ss_pred             CCEEEE--EeCCCcEEEEeCcCCcE----------------EEEeecCCcccceEEEEEcCCCcEEEEEeCCCc-EEEEe
Q psy15421        238 GWAFAT--GSDDATCRLFDIRADQE----------------LAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN-CNVWD  298 (340)
Q Consensus       238 ~~~l~s--~s~d~~i~iwd~~~~~~----------------~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~-i~iw~  298 (340)
                       .+++.  |+.||.|++||+.+.+.                +..+  ..+...|++++|+|++++|++|+.|++ |++||
T Consensus       148 -~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~--~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd  224 (355)
T 3vu4_A          148 -GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI--KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK  224 (355)
T ss_dssp             -TEEEEEESSCTTCEEEEECCC------------------CCEEE--CCCSSCEEEEEECTTSSEEEEEETTCSEEEEEE
T ss_pred             -cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE--EccCCceEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence             45655  68999999999986541                2222  234457999999999999999999998 99999


Q ss_pred             CCCceeeeeec-c-CCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        299 SMKTERAGILA-G-HDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       299 ~~~~~~~~~~~-~-h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ..+++++..+. + |...|++++|+|||++|++|+.|++|+|||
T Consensus       225 ~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~  268 (355)
T 3vu4_A          225 TEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE  268 (355)
T ss_dssp             TTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred             CCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence            99999999887 5 999999999999999999999999999996

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.7e-30  Score=231.81  Aligned_cols=283  Identities=16%  Similarity=0.132  Sum_probs=222.6

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeE-EEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEE-eCCCeEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNL-VSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACG-GLDNICSI  123 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~-~~d~~v~i  123 (340)
                      +..+.+.+|. .+.+++|+|+++.+ ++++.|++|++||..+++.+..+..+. .+.+++|+|++++++.+ ..++.|++
T Consensus        23 ~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v  100 (391)
T 1l0q_A           23 KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSV  100 (391)
T ss_dssp             EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEE
Confidence            4455677775 48999999999976 677799999999999998888887665 79999999999988654 46799999


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEcCCCe-E-EEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEE-E
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-I-VTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTF-V  200 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~  200 (340)
                      ||+.++.    ....+..+ ..+..+.|.+++. + ++++.++.|.+||+.+++....+..+ ..+.+++|+|+++.+ +
T Consensus       101 ~d~~~~~----~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~  174 (391)
T 1l0q_A          101 IDTTSNT----VAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYV  174 (391)
T ss_dssp             EETTTTE----EEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEE
T ss_pred             EECCCCe----EEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEE
Confidence            9997653    22333333 3567788887654 5 57777999999999999887777655 457999999999877 6


Q ss_pred             EEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEe---CCCcEEEEeCcCCcEEEEeecCCcccceEEEE
Q psy15421        201 SGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGS---DDATCRLFDIRADQELAMYSHDNIICGITSVA  277 (340)
Q Consensus       201 sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s---~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  277 (340)
                      +++.|+.|++||+++++....+. +...+.+++|+|+++++++++   .++.|++||+.+.+.+..+....   .+.+++
T Consensus       175 ~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~  250 (391)
T 1l0q_A          175 ANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIA  250 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEE
T ss_pred             EeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEE
Confidence            77889999999999998877776 456789999999999998888   68999999999887776665432   478899


Q ss_pred             EcCCCcEE-EEEeCCCcEEEEeCCCceeeeeeccCCcceE---EEEECC------------CC----------CEEEEee
Q psy15421        278 FSRSGRLL-LAGYDDFNCNVWDSMKTERAGILAGHDNRVS---CLGVTE------------DG----------MAVATGS  331 (340)
Q Consensus       278 ~s~~~~~l-~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~---~~~~s~------------d~----------~~l~s~s  331 (340)
                      |+|++++| ++++.|+.|++||..+++.+..+..|..+..   .+.+.|            +.          ..+.+.+
T Consensus       251 ~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~  330 (391)
T 1l0q_A          251 VTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLS  330 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECC
T ss_pred             EccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCC
Confidence            99999977 5678899999999999988887776655432   122222            11          3466777


Q ss_pred             CCCcEEecC
Q psy15421        332 WDSFLRIWN  340 (340)
Q Consensus       332 ~D~~i~iW~  340 (340)
                      .|..+++||
T Consensus       331 ~~~~~~~W~  339 (391)
T 1l0q_A          331 KDATEWKWD  339 (391)
T ss_dssp             BSCSEEEEE
T ss_pred             CCceEEEEE
Confidence            888999995

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-31  Score=242.15  Aligned_cols=248  Identities=15%  Similarity=0.082  Sum_probs=200.4

Q ss_pred             EEecCccCcEEEEEEcCCCCeE-EEEeCCCeEEEEeCC--CCCeeEEee--CCCCcEEEEEECCCCCEEEEEeCCCeEEE
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNL-VSASQDGKLIVWDSY--TTNKVHAIP--LRSSWVMTCAYAPSGSFVACGGLDNICSI  123 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~~--~~~~~~~~~--~~~~~i~~v~~~~~~~~l~~~~~d~~v~i  123 (340)
                      ..+.+|.+.|.+++|+|++++| ++++.||+|++||+.  +++.+..+.  .|...|.+++|+|++++|++|+.++.+++
T Consensus        96 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~  175 (450)
T 2vdu_B           96 LGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYS  175 (450)
T ss_dssp             ----CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence            3456888999999999999996 899999999999998  777777765  56788999999999999999999999999


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEcCC---C-eEEEEeCCCeEEEEECCCCceEEE-EecCCCCeEEEEEcCCCCE
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFLDD---N-QIVTSSGDMSCALWDIETGQQCAS-FIGHTGDVMSLSLAPDMRT  198 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~  198 (340)
                      |++............+.+|...+.++.|+++   + .|++++.|+.|++||+.+++.+.. +.+|...|.+++|+ ++++
T Consensus       176 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~  254 (450)
T 2vdu_B          176 IDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYL  254 (450)
T ss_dssp             EETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTE
T ss_pred             EecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCE
Confidence            9987654321122345678999999999876   6 688999999999999999888777 45899999999999 9999


Q ss_pred             EEEEeCCCcEEEEECCCCeeeeEecC-------------------------CCCCeEEEEEecCCCEEEEEe-CCCcEEE
Q psy15421        199 FVSGACDASAKLWDIRDGSCKQTFPG-------------------------HESDINAVTFFPNGWAFATGS-DDATCRL  252 (340)
Q Consensus       199 ~~sg~~dg~i~~wd~~~~~~~~~~~~-------------------------h~~~v~~v~~~~~~~~l~s~s-~d~~i~i  252 (340)
                      +++|+.|+.|++||+++++++..+..                         ....|.+++|+|++.++++++ .|+.|++
T Consensus       255 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~i  334 (450)
T 2vdu_B          255 LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIII  334 (450)
T ss_dssp             EEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEE
Confidence            99999999999999999988777652                         235689999999999999999 8999999


Q ss_pred             EeC--cCC---cEEEEeecCCcccceEEEEEcCCCcEEEEEeC------CCcEEEEeCC
Q psy15421        253 FDI--RAD---QELAMYSHDNIICGITSVAFSRSGRLLLAGYD------DFNCNVWDSM  300 (340)
Q Consensus       253 wd~--~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~------d~~i~iw~~~  300 (340)
                      |++  ...   ..+..+...   ..+.+++|+|++.++++++.      +..|++|...
T Consensus       335 w~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          335 LEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             EEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            999  444   333333322   45899999996544544443      4557888743

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=3.5e-32  Score=243.39  Aligned_cols=237  Identities=10%  Similarity=0.049  Sum_probs=166.4

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCee-----EEeeCCCCcEEEEEECC--------CCCEEEEEeCCCeEE
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKV-----HAIPLRSSWVMTCAYAP--------SGSFVACGGLDNICS  122 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~i~~v~~~~--------~~~~l~~~~~d~~v~  122 (340)
                      ..+....+.+++.+|++++.|++|+|||..+++..     ..+.+|...|.+++|+|        ++++||+|+.|++|+
T Consensus        90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~  169 (393)
T 4gq1_A           90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI  169 (393)
T ss_dssp             -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred             CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence            33344444556678999999999999999877543     23568999999999998        889999999999999


Q ss_pred             EEEccCCCCceEEEEeecCCCcceEEEEEcCCC--eEEEEeCCCeEEEEECCCCceEEE---------------------
Q psy15421        123 IYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN--QIVTSSGDMSCALWDIETGQQCAS---------------------  179 (340)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~---------------------  179 (340)
                      +||+..+.    ....+..|...+.++.|++++  .|++++.|++|++||+++++....                     
T Consensus       170 ~Wd~~~~~----~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~  245 (393)
T 4gq1_A          170 IWRLTDEG----PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV  245 (393)
T ss_dssp             EEEEETTE----EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred             EEECCCCc----eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence            99997643    233455678889999998764  588999999999999987754322                     


Q ss_pred             ----EecCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEE------------------ec
Q psy15421        180 ----FIGHTGDVMSLSLA-PDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTF------------------FP  236 (340)
Q Consensus       180 ----~~~~~~~v~~~~~~-~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~------------------~~  236 (340)
                          ..+|...+.++.|. |+++.+++++.|+++++||+..+.....+..|...+..+.+                  +|
T Consensus       246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (393)
T 4gq1_A          246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP  325 (393)
T ss_dssp             ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred             eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc
Confidence                23567778889886 79999999999999999999887766666555544444333                  32


Q ss_pred             --CCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeC
Q psy15421        237 --NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       237 --~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~  299 (340)
                        ++.++++|+.||.|++||+.+++.......  +..+|.+++|+|||++||+++++| +.+|.+
T Consensus       326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~--~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ--LGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             SCTTEEEEEETTTTEEEEEETTCTTCCEEEEE--CSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCcEEEEecC--CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence              344677888999999999988766544322  223699999999999999999887 556553

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=7.3e-31  Score=229.27  Aligned_cols=239  Identities=15%  Similarity=0.146  Sum_probs=182.4

Q ss_pred             EeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC---CCeEEEEeCCCeEEE
Q psy15421         92 AIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD---DNQIVTSSGDMSCAL  168 (340)
Q Consensus        92 ~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~l~~~~~d~~v~i  168 (340)
                      .+.+|...|.+++|+|++++|++|+.|+.|++|++..+.........+.+|...|.++.|.+   +..|++++.|+.|++
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            45689999999999999999999999999999999876666566777889999999999986   567899999999999


Q ss_pred             EECCCC---------ceEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeeeeEec-------------C
Q psy15421        169 WDIETG---------QQCASFIGHTGDVMSLSLAPD--MRTFVSGACDASAKLWDIRDGSCKQTFP-------------G  224 (340)
Q Consensus       169 wd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~~~sg~~dg~i~~wd~~~~~~~~~~~-------------~  224 (340)
                      ||++++         +....+..|...+.+++|+|+  +.++++++.||.|++||+++++....+.             +
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  165 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN  165 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence            999876         457778889999999999999  9999999999999999998876543332             6


Q ss_pred             CCCCeEEEEEecC---CCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCC----cEEEEEeCCCcEEEE
Q psy15421        225 HESDINAVTFFPN---GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSG----RLLLAGYDDFNCNVW  297 (340)
Q Consensus       225 h~~~v~~v~~~~~---~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~----~~l~~g~~d~~i~iw  297 (340)
                      |...+.+++|+|+   +.++++++.|+.+.+|+....+.........+...|++++|+|++    ++|++|+.|+.|++|
T Consensus       166 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iw  245 (351)
T 3f3f_A          166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF  245 (351)
T ss_dssp             CSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEE
T ss_pred             cccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEE
Confidence            7889999999997   899999999999988887766553333334445679999999998    899999999999999


Q ss_pred             eCCCceeeeeeccCCcceEEEEECCCCCEEEEe
Q psy15421        298 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATG  330 (340)
Q Consensus       298 ~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~  330 (340)
                      |..+.........+...+.....+++...+.++
T Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (351)
T 3f3f_A          246 KITEKLSPLASEESLTNSNMFDNSADVDMDAQG  278 (351)
T ss_dssp             EEEECC---------------------------
T ss_pred             eCCCCcCccccCCcccceeccCCCccccccccc
Confidence            987665444443444444444444444444333

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.98  E-value=4.1e-29  Score=225.84  Aligned_cols=281  Identities=8%  Similarity=0.014  Sum_probs=219.4

Q ss_pred             ccCcEEEEE---EcCCCCeEEEEe--------------CCC--eEEEEeCCCC--CeeEEeeCCCCcEEEEEECCCCCEE
Q psy15421         54 HLAKIYAMH---WGSDSRNLVSAS--------------QDG--KLIVWDSYTT--NKVHAIPLRSSWVMTCAYAPSGSFV  112 (340)
Q Consensus        54 h~~~v~~~~---~s~~~~~l~s~~--------------~d~--~i~iwd~~~~--~~~~~~~~~~~~i~~v~~~~~~~~l  112 (340)
                      ....+..++   |+|+++.++..+              .|+  .|..||..++  +.+..+..+. .+.+++|+|++.++
T Consensus        59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~  137 (433)
T 3bws_A           59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLA  137 (433)
T ss_dssp             TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEE
T ss_pred             cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEE
Confidence            345678888   888877665432              333  3444444434  3445555544 35588999988888


Q ss_pred             EEEeCCCeEEEEEccCCCCceEEEE-eecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEE
Q psy15421        113 ACGGLDNICSIYSLKTREGNVRVSR-ELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSL  190 (340)
Q Consensus       113 ~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~  190 (340)
                      ++++.++.|++|++.+++....... .+.+|...+.++.|.+++ .+++++.|+.|++||+++++....+..|...+.++
T Consensus       138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~  217 (433)
T 3bws_A          138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL  217 (433)
T ss_dssp             EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEE
T ss_pred             EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEE
Confidence            8888999999999876542110000 345788899999997766 46777889999999999999888888899999999


Q ss_pred             EEcCCCCEEE-EEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEe--------CCCcEEEEeCcCCcEE
Q psy15421        191 SLAPDMRTFV-SGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGS--------DDATCRLFDIRADQEL  261 (340)
Q Consensus       191 ~~~~~~~~~~-sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s--------~d~~i~iwd~~~~~~~  261 (340)
                      +|+|+++.++ +++.|+.|++||+++++.+..++.+ ..+.+++|+|++.++++++        .|+.|++||+.+++.+
T Consensus       218 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~  296 (433)
T 3bws_A          218 LYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI  296 (433)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE
T ss_pred             EEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE
Confidence            9999999875 5558999999999999888887754 4589999999999999888        5899999999988776


Q ss_pred             EEeecCCcccceEEEEEcCCCcEE-EEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeC--------
Q psy15421        262 AMYSHDNIICGITSVAFSRSGRLL-LAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSW--------  332 (340)
Q Consensus       262 ~~~~~~~~~~~i~~~~~s~~~~~l-~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~--------  332 (340)
                      ....+.   ..+.+++|+|+++.+ ++++.|+.|++|+..+++....+. |...+.+++|+|+|++|++++.        
T Consensus       297 ~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  372 (433)
T 3bws_A          297 DTIGPP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEG  372 (433)
T ss_dssp             EEEEEE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTC
T ss_pred             eeccCC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccc
Confidence            655433   257899999999754 667899999999999888777664 7788999999999998888876        


Q ss_pred             -------CCcEEecC
Q psy15421        333 -------DSFLRIWN  340 (340)
Q Consensus       333 -------D~~i~iW~  340 (340)
                             ||.|++||
T Consensus       373 ~~~~g~~dg~v~~~d  387 (433)
T 3bws_A          373 YLKKGLVLGKVYVID  387 (433)
T ss_dssp             TTSCCSSCCEEEEEE
T ss_pred             cccccccceEEEEEE
Confidence                   57999996

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.98  E-value=6.9e-30  Score=218.13  Aligned_cols=247  Identities=14%  Similarity=0.048  Sum_probs=166.8

Q ss_pred             eeEEeEEecCccCcEEEEEEcCCCCeEEEEe--CCCeEEEEeCC--CC----CeeEEeeCCCCcEEEEEECCCCCEEEEE
Q psy15421         44 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSAS--QDGKLIVWDSY--TT----NKVHAIPLRSSWVMTCAYAPSGSFVACG  115 (340)
Q Consensus        44 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~--~d~~i~iwd~~--~~----~~~~~~~~~~~~i~~v~~~~~~~~l~~~  115 (340)
                      +.+..+++.+|..+|..+.+.||-..|+...  +=..-.++-+.  ..    .....-.+|...+..+   ++++++.++
T Consensus        75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss  151 (356)
T 2w18_A           75 QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSS  151 (356)
T ss_dssp             BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEE
T ss_pred             cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEec
Confidence            4467788999988777777777543333221  11111111110  00    0111111222223332   456666664


Q ss_pred             e--CCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC---C-CeEEEEeCCCeEEEEECCCCceEEEEecCC---CC
Q psy15421        116 G--LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD---D-NQIVTSSGDMSCALWDIETGQQCASFIGHT---GD  186 (340)
Q Consensus       116 ~--~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~---~~  186 (340)
                      +  .|+.|++|++.... .  ....+.+|...+..+.|++   + ..|++++.|++|++||+++++.+..+.+|.   ..
T Consensus       152 ~~g~d~~V~~~~~s~dG-~--~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~  228 (356)
T 2w18_A          152 GTLSDQQVEVMTFAEDG-G--GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQAS  228 (356)
T ss_dssp             SSSTTCEEEEEEECTTS-C--EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CC
T ss_pred             ccCCCCcEEEEEECCCC-c--eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceee
Confidence            3  68999999985432 2  3344556777777777754   2 468889999999999999999999998754   35


Q ss_pred             eEEEEEcCCCCEE------------EEEeCCCcEEEEECCCCeeeeEe-----cCCCCCeEEEEEecCCCEEEEEeCCCc
Q psy15421        187 VMSLSLAPDMRTF------------VSGACDASAKLWDIRDGSCKQTF-----PGHESDINAVTFFPNGWAFATGSDDAT  249 (340)
Q Consensus       187 v~~~~~~~~~~~~------------~sg~~dg~i~~wd~~~~~~~~~~-----~~h~~~v~~v~~~~~~~~l~s~s~d~~  249 (340)
                      +.+++|+|++.++            ++|+.|++|++||..+++++..+     .+|...+.+..++  +..+|+|+.|++
T Consensus       229 v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgT  306 (356)
T 2w18_A          229 VCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGT  306 (356)
T ss_dssp             CEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSC
T ss_pred             eEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCc
Confidence            7788999999876            56889999999999999877654     4676665444444  789999999999


Q ss_pred             EEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeC
Q psy15421        250 CRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       250 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~  299 (340)
                      |+|||+.+++.+..+.... ...+.+++|+|||++|++|+.|++|++||.
T Consensus       307 IkIWDl~tGk~l~tL~gH~-~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          307 IAIWDLLLGQCTALLPPVS-DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEETTTCSEEEEECCC---CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEEECCCCcEEEEecCCC-CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            9999999999888774221 112446899999999999999999999984

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=1e-28  Score=222.27  Aligned_cols=275  Identities=11%  Similarity=0.101  Sum_probs=209.8

Q ss_pred             ccCcEEEEEEcCCCC-eEEEEe----CCC----eEEEEeC--CCCCee--EEeeCCCCcEEEEEECC-------------
Q psy15421         54 HLAKIYAMHWGSDSR-NLVSAS----QDG----KLIVWDS--YTTNKV--HAIPLRSSWVMTCAYAP-------------  107 (340)
Q Consensus        54 h~~~v~~~~~s~~~~-~l~s~~----~d~----~i~iwd~--~~~~~~--~~~~~~~~~i~~v~~~~-------------  107 (340)
                      +...+...+|.+.+. .+++|+    .||    +++|||+  .+++.+  ..+..|...+..+++++             
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~  140 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG  140 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence            345778888988875 455776    567    9999999  888876  44677766665555543             


Q ss_pred             -CCCEEEEEeCC------CeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCC---eEEEEECCCCce
Q psy15421        108 -SGSFVACGGLD------NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDM---SCALWDIETGQQ  176 (340)
Q Consensus       108 -~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~---~v~iwd~~~~~~  176 (340)
                       .+..++.++.+      +.|++||+....     ...+.+|...+.++.|++++ .+++++.++   .|.+||+.+++.
T Consensus       141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-----~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~  215 (415)
T 2hqs_A          141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYN-----QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV  215 (415)
T ss_dssp             CTTCEEEEEEECSSSSCCEEEEEEETTSCS-----CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred             cCCCEEEEEEecCCCCccceEEEEcCCCCC-----CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE
Confidence             25566665554      799999986422     23445678889999998876 577777765   999999998876


Q ss_pred             EEEEecCCCCeEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeC-CC--cE
Q psy15421        177 CASFIGHTGDVMSLSLAPDMRTFV-SGACDAS--AKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSD-DA--TC  250 (340)
Q Consensus       177 ~~~~~~~~~~v~~~~~~~~~~~~~-sg~~dg~--i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-d~--~i  250 (340)
                      . .+..|...+.+++|+|+++.++ +++.|+.  |++||+++++. ..+..|...+.+++|+|+|++|+.++. ++  .|
T Consensus       216 ~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i  293 (415)
T 2hqs_A          216 R-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQV  293 (415)
T ss_dssp             E-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             E-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEE
Confidence            4 5677888999999999999777 6776665  99999998875 566778889999999999999998886 44  67


Q ss_pred             EEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCC---CcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEE
Q psy15421        251 RLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD---FNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAV  327 (340)
Q Consensus       251 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l  327 (340)
                      ++||+.+++......+   ...+.+++|+|+|++|++++.+   ..|++||..+++.. .+..|. .+.+++|+|||++|
T Consensus       294 ~~~d~~~~~~~~l~~~---~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l  368 (415)
T 2hqs_A          294 YKVNINGGAPQRITWE---GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMV  368 (415)
T ss_dssp             EEEETTSSCCEECCCS---SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEE
T ss_pred             EEEECCCCCEEEEecC---CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEE
Confidence            7778877654322222   2347889999999999988764   58999999887664 455564 89999999999999


Q ss_pred             EEeeCCC---cEEecC
Q psy15421        328 ATGSWDS---FLRIWN  340 (340)
Q Consensus       328 ~s~s~D~---~i~iW~  340 (340)
                      ++++.|+   .|++||
T Consensus       369 ~~~s~~~~~~~l~~~d  384 (415)
T 2hqs_A          369 IYSSSQGMGSVLNLVS  384 (415)
T ss_dssp             EEEEEETTEEEEEEEE
T ss_pred             EEEEcCCCccEEEEEE
Confidence            9988877   688875

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=2.6e-27  Score=219.76  Aligned_cols=284  Identities=14%  Similarity=0.111  Sum_probs=217.4

Q ss_pred             EeEEec-CccCcEEEEEEcCCCCeEEEEeCCCeEEEEeC--CCCCeeEEeeCCCCcEEEEEECC----CCCEEEEEeC-C
Q psy15421         47 TRRTLR-GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS--YTTNKVHAIPLRSSWVMTCAYAP----SGSFVACGGL-D  118 (340)
Q Consensus        47 ~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~~~~~~~i~~v~~~~----~~~~l~~~~~-d  118 (340)
                      ...++. +|.  +..++|+||+++|++++.|++|++||+  .+++.+..++. ...+..++|+|    +|+++++++. +
T Consensus       171 ~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~  247 (543)
T 1nir_A          171 IVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWP  247 (543)
T ss_dssp             EEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEES
T ss_pred             EEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccC
Confidence            345666 443  899999999999999999999999999  78888888874 45578999999    9999999884 8


Q ss_pred             CeEEEEEccCCCCceEEEEeecC----------CC-cceEEEEEcCCC--eEEEEeCCCeEEEEECCCCceEE-EEecCC
Q psy15421        119 NICSIYSLKTREGNVRVSRELPG----------HT-GYLSCCRFLDDN--QIVTSSGDMSCALWDIETGQQCA-SFIGHT  184 (340)
Q Consensus       119 ~~v~i~~~~~~~~~~~~~~~~~~----------~~-~~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~  184 (340)
                      ++|.+||..+.+.    ...++.          |. ..+..+.+++++  .+++...++.|.+||..+.+.+. ....+.
T Consensus       248 ~~v~v~D~~t~~~----~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~  323 (543)
T 1nir_A          248 PQFAIMDGETLEP----KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA  323 (543)
T ss_dssp             SEEEEEETTTCCE----EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECC
T ss_pred             CeEEEEecccccc----ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccC
Confidence            9999999876532    222222          22 256777777643  35667779999999998765433 122456


Q ss_pred             CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeeeEecC----CCCCeEEEEEecC-CCEEEEEe-CCCcEEEEeCcC
Q psy15421        185 GDVMSLSLAPDMRTFVSG-ACDASAKLWDIRDGSCKQTFPG----HESDINAVTFFPN-GWAFATGS-DDATCRLFDIRA  257 (340)
Q Consensus       185 ~~v~~~~~~~~~~~~~sg-~~dg~i~~wd~~~~~~~~~~~~----h~~~v~~v~~~~~-~~~l~s~s-~d~~i~iwd~~~  257 (340)
                      ..+..++|+|++++++++ ..+++|.+||..++++...++.    |.+....+ ++|+ +..++++. .|++|.+||+..
T Consensus       324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence            678899999999977655 4689999999999998887763    65444443 4677 66778876 689999999987


Q ss_pred             -------CcEEEEeecCCcccceEEEEEcCCCcEEEEEe-------CCCcEEEEeCCCceee-eee--------ccCCcc
Q psy15421        258 -------DQELAMYSHDNIICGITSVAFSRSGRLLLAGY-------DDFNCNVWDSMKTERA-GIL--------AGHDNR  314 (340)
Q Consensus       258 -------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-------~d~~i~iw~~~~~~~~-~~~--------~~h~~~  314 (340)
                             .+.+..+....  .++..++|+|++++|++++       .+.+|.+||..+.+.. ..+        ..|...
T Consensus       403 ~~~~~~~~~~v~~l~~~g--~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~  480 (543)
T 1nir_A          403 KNHPQYAWKKVAELQGQG--GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR  480 (543)
T ss_dssp             TTCTTTBTSEEEEEECSC--SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCE
T ss_pred             CCCchhcCeEEEEEEcCC--CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCc
Confidence                   66666654322  3467799999999999987       2679999999988766 332        456788


Q ss_pred             eEEEEECCCCCEEEEee-----CCCcEEecC
Q psy15421        315 VSCLGVTEDGMAVATGS-----WDSFLRIWN  340 (340)
Q Consensus       315 i~~~~~s~d~~~l~s~s-----~D~~i~iW~  340 (340)
                      +..+.|+|||+.|+.+.     .|+.|.|||
T Consensus       481 ~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D  511 (543)
T 1nir_A          481 VVQPEYNKRGDEVWFSVWNGKNDSSALVVVD  511 (543)
T ss_dssp             EEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred             eEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence            99999999999888652     479999997

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1.3e-27  Score=215.06  Aligned_cols=264  Identities=13%  Similarity=0.051  Sum_probs=207.5

Q ss_pred             EEecCccCcEEEEEEcC--------------CCCeEEEEeCC------CeEEEEeCCCCCeeEEeeCCCCcEEEEEECCC
Q psy15421         49 RTLRGHLAKIYAMHWGS--------------DSRNLVSASQD------GKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS  108 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~--------------~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~  108 (340)
                      +++.+|...+..+++++              .+..++.++.+      +.|++||... .....+..|...+.+++|+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC
Confidence            55778888777777664              25667766654      7999999874 445667778889999999999


Q ss_pred             CCEEEEEeCCC---eEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCe-EE-EEeCCC--eEEEEECCCCceEEEEe
Q psy15421        109 GSFVACGGLDN---ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IV-TSSGDM--SCALWDIETGQQCASFI  181 (340)
Q Consensus       109 ~~~l~~~~~d~---~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~d~--~v~iwd~~~~~~~~~~~  181 (340)
                      |++|++++.++   .+++||+.++..     ..+..|...+.++.|++++. |+ +++.++  .|.+||+.+++. ..+.
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~-----~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~  263 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAV-----RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVT  263 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCE-----EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECC
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcE-----EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCc
Confidence            99999999885   999999976531     23456777888999998765 55 455454  499999988765 5677


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeC
Q psy15421        182 GHTGDVMSLSLAPDMRTFVSGAC-DA--SAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDD---ATCRLFDI  255 (340)
Q Consensus       182 ~~~~~v~~~~~~~~~~~~~sg~~-dg--~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d---~~i~iwd~  255 (340)
                      .|...+.+++|+|+++.+++++. ++  .|.+||+.+++. ..+..|...+.+++|+|+|++|++++.+   ..|++||+
T Consensus       264 ~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~  342 (415)
T 2hqs_A          264 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL  342 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred             CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence            78888999999999998888776 45  677779887764 3455567788999999999999988764   58999999


Q ss_pred             cCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCC---cEEEEeCCCceeeeeeccCCcceEEEEECCCCC
Q psy15421        256 RADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDF---NCNVWDSMKTERAGILAGHDNRVSCLGVTEDGM  325 (340)
Q Consensus       256 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~---~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~  325 (340)
                      .+++......+ .   .+.+++|+|+|++|++++.++   .|++|+.. +.....+.+|.+.|.+++|+|...
T Consensus       343 ~~~~~~~l~~~-~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          343 ATGGVQVLSST-F---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             TTCCEEECCCS-S---SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             CCCCEEEecCC-C---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence            87765432222 1   588999999999999988777   79999975 556778889999999999999754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=4.7e-27  Score=218.03  Aligned_cols=270  Identities=11%  Similarity=0.055  Sum_probs=212.5

Q ss_pred             EcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc--cCCCCceEEEEeec
Q psy15421         63 WGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL--KTREGNVRVSRELP  140 (340)
Q Consensus        63 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~--~~~~~~~~~~~~~~  140 (340)
                      |+|++..+++++.|++|.+||..+++.+.++..+.. +..++|+|++++|++++.|+.|++||+  .+.    .....++
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~----~~~~~i~  219 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP----TKVAEIK  219 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC----EEEEEEE
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC----cEEEEEe
Confidence            789999999999999999999999999988885444 889999999999999999999999999  443    2334454


Q ss_pred             CCCcceEEEEEcC----CC-eEEEEe-CCCeEEEEECCCCceEEEEec----------CCC-CeEEEEEcCCCCE-EEEE
Q psy15421        141 GHTGYLSCCRFLD----DN-QIVTSS-GDMSCALWDIETGQQCASFIG----------HTG-DVMSLSLAPDMRT-FVSG  202 (340)
Q Consensus       141 ~~~~~v~~~~~~~----~~-~l~~~~-~d~~v~iwd~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~-~~sg  202 (340)
                      . ......+.|++    ++ .+++++ .+++|.+||..+++.+..+..          |.. .+..+.++|++.. +++.
T Consensus       220 ~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~  298 (543)
T 1nir_A          220 I-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  298 (543)
T ss_dssp             C-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             c-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence            3 33456778887    65 565655 489999999999998887754          223 6889999997664 5567


Q ss_pred             eCCCcEEEEECCCCeeee--EecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCcCCcEEEEeecCC--cccceEEEE
Q psy15421        203 ACDASAKLWDIRDGSCKQ--TFPGHESDINAVTFFPNGWAFATG-SDDATCRLFDIRADQELAMYSHDN--IICGITSVA  277 (340)
Q Consensus       203 ~~dg~i~~wd~~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~  277 (340)
                      ..+++|.+||+.+.+...  .+. +...+..++|+|+|++++++ ..++.|.+||..+++.+..+....  +......+ 
T Consensus       299 ~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-  376 (543)
T 1nir_A          299 KETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-  376 (543)
T ss_dssp             TTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred             CCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence            789999999998765433  343 55668889999999987655 458999999999988776654221  11112222 


Q ss_pred             EcCC-CcEEEEEe-CCCcEEEEeCCC-------ceeeeeeccCCcceEEEEECCCCCEEEEee-------CCCcEEecC
Q psy15421        278 FSRS-GRLLLAGY-DDFNCNVWDSMK-------TERAGILAGHDNRVSCLGVTEDGMAVATGS-------WDSFLRIWN  340 (340)
Q Consensus       278 ~s~~-~~~l~~g~-~d~~i~iw~~~~-------~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s-------~D~~i~iW~  340 (340)
                      ++|+ +.+++++. .|++|.+|+..+       ++.+.++.+|...+..++++|||++|++++       .+++|.|||
T Consensus       377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d  455 (543)
T 1nir_A          377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  455 (543)
T ss_dssp             EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred             CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence            5777 67777775 689999999987       888999999998999999999999999988       378999996

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=2.5e-27  Score=228.52  Aligned_cols=281  Identities=12%  Similarity=0.082  Sum_probs=211.6

Q ss_pred             cCcEEEEEEcCCCCeEEEEeC-CC-----eEEEEeCCCCCeeEEeeCCCC------------------------cEEEEE
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQ-DG-----KLIVWDSYTTNKVHAIPLRSS------------------------WVMTCA  104 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~~~~------------------------~i~~v~  104 (340)
                      ...+.+++|+|||++|++++. |+     .|++||+.+++....+..+..                        .+..++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            346899999999999999998 88     999999999887665544322                        267889


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCC
Q psy15421        105 YAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHT  184 (340)
Q Consensus       105 ~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~  184 (340)
                      |+|||++|++++. +.+.+|++.++...  ....+..|...+..+.|++++..++...++.|.+||+.+++.......+.
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~--~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~  192 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKA--AVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGS  192 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTT--SCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcc--eEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCc
Confidence            9999999999886 89999999765100  01234456777888999988764444456799999999876554333333


Q ss_pred             CC----------------eEEEEEcCCCCEEEEEeCCC---------------------------------cEEEEECCC
Q psy15421        185 GD----------------VMSLSLAPDMRTFVSGACDA---------------------------------SAKLWDIRD  215 (340)
Q Consensus       185 ~~----------------v~~~~~~~~~~~~~sg~~dg---------------------------------~i~~wd~~~  215 (340)
                      ..                +.+++|+||++.|++++.|+                                 .|.+||+.+
T Consensus       193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~  272 (741)
T 2ecf_A          193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE  272 (741)
T ss_dssp             SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred             cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence            22                47799999999999888766                                 889999988


Q ss_pred             -CeeeeEec--CCCCCeEEEEEecCCCEEEEEeC-----CCcEEEEeCcCCcEEEEeecCC--cccceEEEEEcCCCcEE
Q psy15421        216 -GSCKQTFP--GHESDINAVTFFPNGWAFATGSD-----DATCRLFDIRADQELAMYSHDN--IICGITSVAFSRSGRLL  285 (340)
Q Consensus       216 -~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~s~-----d~~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l  285 (340)
                       ++......  .|...+..++| |||++|+.++.     +..|++||..+++....+....  ....+..++|+|||+++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~  351 (741)
T 2ecf_A          273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSIL  351 (741)
T ss_dssp             TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred             CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEE
Confidence             77554432  47778999999 99999987654     5779999998877655443221  11134578999999999


Q ss_pred             EEEeCCCcEEEEeCC-CceeeeeeccCCcceEEE-EECCCCCEEE-EeeCCC--cEEecC
Q psy15421        286 LAGYDDFNCNVWDSM-KTERAGILAGHDNRVSCL-GVTEDGMAVA-TGSWDS--FLRIWN  340 (340)
Q Consensus       286 ~~g~~d~~i~iw~~~-~~~~~~~~~~h~~~i~~~-~~s~d~~~l~-s~s~D~--~i~iW~  340 (340)
                      ++++.|+.+++|... ++. ...+..|...|..+ .|+|||+.|+ +++.|+  .++||+
T Consensus       352 ~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~  410 (741)
T 2ecf_A          352 WSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA  410 (741)
T ss_dssp             EEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred             EEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence            999999988888654 344 67778888888887 5999998775 555565  888984

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=6.6e-26  Score=197.96  Aligned_cols=269  Identities=12%  Similarity=0.140  Sum_probs=187.9

Q ss_pred             eEEEEeCCCeEEEEeCCC-CCe-eEEeeCCCCcEEEEEECCCCCEEEEEeCC-CeEEEEEccCCCCceEEEEeecCCCcc
Q psy15421         69 NLVSASQDGKLIVWDSYT-TNK-VHAIPLRSSWVMTCAYAPSGSFVACGGLD-NICSIYSLKTREGNVRVSRELPGHTGY  145 (340)
Q Consensus        69 ~l~s~~~d~~i~iwd~~~-~~~-~~~~~~~~~~i~~v~~~~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~~~~~~~  145 (340)
                      .+++++.|+.|++||+.. ++. ......+...+..++|+|++++|++++.+ +.+.+|++....+.......+..+. .
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~   85 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S   85 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence            455558899999999853 322 22223355667889999999999988887 8999999974333444444444433 5


Q ss_pred             eEEEEEcCCCe-EEEEe-CCCeEEEEECC---CCceEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-Cee
Q psy15421        146 LSCCRFLDDNQ-IVTSS-GDMSCALWDIE---TGQQCASFIGHTGDVMSLSLAPDMRTFVSGA-CDASAKLWDIRD-GSC  218 (340)
Q Consensus       146 v~~~~~~~~~~-l~~~~-~d~~v~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~-~dg~i~~wd~~~-~~~  218 (340)
                      +..+.|++++. +++++ .++.|.+||+.   ..+....+. ....+.+++|+|+++.+++++ .++.|++||+.+ ++.
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  164 (343)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence            66778887764 55554 48899999994   333334433 334588999999999888777 899999999987 644


Q ss_pred             ee----EecC-CCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCcC--CcE--EEEeec-C-C--cccceEEEEEcCCCcE
Q psy15421        219 KQ----TFPG-HESDINAVTFFPNGWAFATG-SDDATCRLFDIRA--DQE--LAMYSH-D-N--IICGITSVAFSRSGRL  284 (340)
Q Consensus       219 ~~----~~~~-h~~~v~~v~~~~~~~~l~s~-s~d~~i~iwd~~~--~~~--~~~~~~-~-~--~~~~i~~~~~s~~~~~  284 (340)
                      ..    .+.. ....+..++|+|++++++.+ ..++.|++||+..  +..  ...... . .  ....+..++|+|++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~  244 (343)
T 1ri6_A          165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  244 (343)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence            32    2222 34578899999999976554 4789999999953  222  222211 1 1  1123668999999998


Q ss_pred             EEE-EeCCCcEEEEeCC----CceeeeeeccCCcceEEEEECCCCCEEEEee-CCCcEEecC
Q psy15421        285 LLA-GYDDFNCNVWDSM----KTERAGILAGHDNRVSCLGVTEDGMAVATGS-WDSFLRIWN  340 (340)
Q Consensus       285 l~~-g~~d~~i~iw~~~----~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s-~D~~i~iW~  340 (340)
                      |++ +..++.|.+|+..    +.+.+..+..+.. +..++|+|+|++|+.++ .|+.|.+|+
T Consensus       245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~  305 (343)
T 1ri6_A          245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYE  305 (343)
T ss_dssp             EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEE
Confidence            875 4478999999987    3344555554544 88999999999888777 689999993

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.96  E-value=2.3e-25  Score=193.98  Aligned_cols=271  Identities=11%  Similarity=0.120  Sum_probs=192.5

Q ss_pred             EEcCCCC-eEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeC-CCeEEEEEccCCCCceEEEEee
Q psy15421         62 HWGSDSR-NLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGL-DNICSIYSLKTREGNVRVSREL  139 (340)
Q Consensus        62 ~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~  139 (340)
                      .|.++++ .+++.+.++.|++||..+++.+..+..+...+ .++|+|+++++++++. ++.+.+|+..++...   ...+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~---~~~~   79 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK---VVAI   79 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE---EEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee---EEec
Confidence            3455554 47788899999999999999888877766667 9999999997766665 889999998765421   2333


Q ss_pred             cCCCcceEEEEEcCCCe-EEEEeCC-C--eEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCc-EEEEEC
Q psy15421        140 PGHTGYLSCCRFLDDNQ-IVTSSGD-M--SCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV-SGACDAS-AKLWDI  213 (340)
Q Consensus       140 ~~~~~~v~~~~~~~~~~-l~~~~~d-~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-sg~~dg~-i~~wd~  213 (340)
                      ..+.....++.+++++. ++++..+ +  .|.+||+.+++.+..+.. ...+.+++|+|++++++ ++..++. |.+|++
T Consensus        80 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~  158 (331)
T 3u4y_A           80 QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKI  158 (331)
T ss_dssp             EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence            34444554467777664 5533334 2  899999999887776654 44578999999998554 5566688 999998


Q ss_pred             CCCeee----eEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEeCcCCcE---EEEeecCCcccceEEEEEcCCCcEE
Q psy15421        214 RDGSCK----QTFPGHESDINAVTFFPNGWAF-ATGSDDATCRLFDIRADQE---LAMYSHDNIICGITSVAFSRSGRLL  285 (340)
Q Consensus       214 ~~~~~~----~~~~~h~~~v~~v~~~~~~~~l-~s~s~d~~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
                      .....+    .........+..++|+|+|+++ +++..++.|++||+.+.+.   +..+...   ..+..++|+|+|++|
T Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l  235 (331)
T 3u4y_A          159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTV  235 (331)
T ss_dssp             CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEE
T ss_pred             CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC---CCCceEEECCCCCEE
Confidence            754322    1112334568899999999865 5555689999999987776   5555433   346789999999977


Q ss_pred             EEEe-CCCcEEEEeCCCcee--eeeeccC----Ccc---eEEEEECCCCCEEEEe-eCCCcEEecC
Q psy15421        286 LAGY-DDFNCNVWDSMKTER--AGILAGH----DNR---VSCLGVTEDGMAVATG-SWDSFLRIWN  340 (340)
Q Consensus       286 ~~g~-~d~~i~iw~~~~~~~--~~~~~~h----~~~---i~~~~~s~d~~~l~s~-s~D~~i~iW~  340 (340)
                      +++. .++.|.+||..+++.  +..+..+    ...   ...++|+|||++|+.+ ..++.|.+||
T Consensus       236 ~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d  301 (331)
T 3u4y_A          236 YVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT  301 (331)
T ss_dssp             EEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence            6554 578899999988776  3332222    222   3568999999987654 5567999996

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.95  E-value=1.4e-24  Score=190.52  Aligned_cols=269  Identities=13%  Similarity=0.021  Sum_probs=206.4

Q ss_pred             cCcEEEEEEcCCCCeEEEEeC-------CCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEE-EeCCCeEEEEEc
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQ-------DGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVAC-GGLDNICSIYSL  126 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~-------d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~-~~~d~~v~i~~~  126 (340)
                      ...+..++|+|+++.+++++.       ++.|.+||..+++.+..+.... .+..++|+|++++++. ...++.+.+||.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-KPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-CCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-CcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            356889999999998887774       5789999999998887776543 3667899999996554 455799999998


Q ss_pred             cCCCCceEEEEeecCCCc---------ceEEEEEcCCC-eEEEEe--CCCeEEEEECCCCceEEEEecCCCCeEEEEEcC
Q psy15421        127 KTREGNVRVSRELPGHTG---------YLSCCRFLDDN-QIVTSS--GDMSCALWDIETGQQCASFIGHTGDVMSLSLAP  194 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~-~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  194 (340)
                      .+++.    ...+..+..         ....+.+++++ .++.+.  .++.|.+||+.+++....+..+...+..++|+|
T Consensus       119 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~  194 (353)
T 3vgz_A          119 KTGEV----KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS  194 (353)
T ss_dssp             TTCCE----EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET
T ss_pred             CCCee----EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC
Confidence            76542    222222221         24667777664 455544  478999999999988877765666688999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeeeeEecC----CCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCcCCcEEEEeecCCc
Q psy15421        195 DMRTFVSGACDASAKLWDIRDGSCKQTFPG----HESDINAVTFFPNGWAFATGSD-DATCRLFDIRADQELAMYSHDNI  269 (340)
Q Consensus       195 ~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~----h~~~v~~v~~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~  269 (340)
                      +++.+++++.++.|.+||..+++....+..    +...+.+++|+|++++++.++. ++.|.+||..+++.+..+.... 
T Consensus       195 dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-  273 (353)
T 3vgz_A          195 EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-  273 (353)
T ss_dssp             TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-
T ss_pred             CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-
Confidence            999999999999999999999988776653    4556888999999987666654 5999999999887776654332 


Q ss_pred             ccceEEEEEcCCCcEEEEEe-CCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCC
Q psy15421        270 ICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWD  333 (340)
Q Consensus       270 ~~~i~~~~~s~~~~~l~~g~-~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D  333 (340)
                         ...++|+|++++++++. .++.|.+||..+++.+..+..+ ..+.+++|+|||++|+.+..+
T Consensus       274 ---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          274 ---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             ---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred             ---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence               24689999999666555 6899999999988887776543 477999999999976655544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.95  E-value=8.3e-27  Score=224.24  Aligned_cols=280  Identities=12%  Similarity=0.070  Sum_probs=201.2

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCC---cEEEEEECCCCCEEEEEeCC---------CeEEEE
Q psy15421         57 KIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSS---WVMTCAYAPSGSFVACGGLD---------NICSIY  124 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~i~~v~~~~~~~~l~~~~~d---------~~v~i~  124 (340)
                      .+.+++|+|||+++++ +.||+|++||+.+++....+..|..   .+..++|+|||++|++++.+         +.+.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678999999998776 7899999999999888777776654   48899999999999998775         678899


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCCCe-EEEEeCCCeEEEEECCCCceEEEEecCCCCe----------------
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSSGDMSCALWDIETGQQCASFIGHTGDV----------------  187 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v----------------  187 (340)
                      ++.++..  ........|...+....|++++. ++.++ ++.|.+||+.+++.......+...+                
T Consensus        97 d~~~~~~--~~l~~~~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~  173 (723)
T 1xfd_A           97 KIPHGDP--QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK  173 (723)
T ss_dssp             ESSSCCC--EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred             ECCCCce--EeccCCccccccccccEECCCCCEEEEEE-CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence            9976542  22222234544577778888774 55555 4899999999887665554443333                


Q ss_pred             --EEEEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCeeeeEecCC------
Q psy15421        188 --MSLSLAPDMRTFVSGACDA----------------------------------SAKLWDIRDGSCKQTFPGH------  225 (340)
Q Consensus       188 --~~~~~~~~~~~~~sg~~dg----------------------------------~i~~wd~~~~~~~~~~~~h------  225 (340)
                        .+++|+||++.|++++.|+                                  .|++||+.+++....+..+      
T Consensus       174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~  253 (723)
T 1xfd_A          174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR  253 (723)
T ss_dssp             SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred             CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence              7899999999999887553                                  7999999888765556544      


Q ss_pred             CCCeEEEEEecCCCEEEEEeC----CCcEEEEeCcCCcEEEEeec--CCcccc-eEEEEEcCCCcEEEE--EeCCC----
Q psy15421        226 ESDINAVTFFPNGWAFATGSD----DATCRLFDIRADQELAMYSH--DNIICG-ITSVAFSRSGRLLLA--GYDDF----  292 (340)
Q Consensus       226 ~~~v~~v~~~~~~~~l~s~s~----d~~i~iwd~~~~~~~~~~~~--~~~~~~-i~~~~~s~~~~~l~~--g~~d~----  292 (340)
                      ...+..++|+|||+.+++.+.    +..|++||+.+++....+..  ...... ...++|+|||+.|+.  +..++    
T Consensus       254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  333 (723)
T 1xfd_A          254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK  333 (723)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred             cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcc
Confidence            567899999999998877653    35799999988765544321  111110 136799999997775  45666    


Q ss_pred             --cEEEEe-CCCce--eeeeeccCCcceE-EEEECCCCCEEEEeeCC---CcEEecC
Q psy15421        293 --NCNVWD-SMKTE--RAGILAGHDNRVS-CLGVTEDGMAVATGSWD---SFLRIWN  340 (340)
Q Consensus       293 --~i~iw~-~~~~~--~~~~~~~h~~~i~-~~~~s~d~~~l~s~s~D---~~i~iW~  340 (340)
                        .|.+|+ ...++  +...+..+...+. .++|||||+.|+..+.+   +.++||+
T Consensus       334 ~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  390 (723)
T 1xfd_A          334 FYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS  390 (723)
T ss_dssp             EEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred             eeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence              567777 33433  1444544444444 47999999998766555   7888884

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.95  E-value=1.4e-25  Score=210.54  Aligned_cols=268  Identities=11%  Similarity=0.044  Sum_probs=194.4

Q ss_pred             cCcEEEEEEcCCCCeEEEEeC-CCeEEEEeCCCCCeeEEeeCCC-CcEEEEEECCCCCEEEEEeC---CCeEEEEEccC-
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQ-DGKLIVWDSYTTNKVHAIPLRS-SWVMTCAYAPSGSFVACGGL---DNICSIYSLKT-  128 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~-~~i~~v~~~~~~~~l~~~~~---d~~v~i~~~~~-  128 (340)
                      ..+|++++|+|||+.|++++. ||+++||++.+++. ..+..+. ..+..++|+|| +.+++++.   +...++|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            457999999999999999887 99999999855544 4444444 57889999999 77777765   45667877765 


Q ss_pred             -CCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC--
Q psy15421        129 -REGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD--  205 (340)
Q Consensus       129 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d--  205 (340)
                       ..... ..  ...+...+....+..+..+++...++.+.+||+.+++...... +..  .+++|+|||+.+++++.|  
T Consensus        99 ~~g~~~-~l--~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~  172 (582)
T 3o4h_A           99 RPGEEQ-RL--EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGG  172 (582)
T ss_dssp             STTCCE-EC--TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEET
T ss_pred             CCCccc-cc--cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCC
Confidence             32222 11  1111222222333233445555555556699999886544333 333  789999999999988877  


Q ss_pred             --CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCC--cEEEEeCcCCcEEEEeecCCcccceEEEE----
Q psy15421        206 --ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDA--TCRLFDIRADQELAMYSHDNIICGITSVA----  277 (340)
Q Consensus       206 --g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~----  277 (340)
                        +.|++||+.+++.. .+..|...+..++|+|||+.|+++..++  .|++||+.+++.. .+..  ....+..++    
T Consensus       173 ~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~--~~~~~~~~~~~~~  248 (582)
T 3o4h_A          173 GRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL--PSKDFSSYRPTAI  248 (582)
T ss_dssp             TEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC--SCSHHHHHCCSEE
T ss_pred             CCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC--CCcChhhhhhccc
Confidence              78999999888754 5677888899999999999999888899  8999999887765 3322  112233445    


Q ss_pred             ----EcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCc---EEecC
Q psy15421        278 ----FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF---LRIWN  340 (340)
Q Consensus       278 ----~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~---i~iW~  340 (340)
                          |+|||+++++++.|+++++|+.  ++...   .+.+.|.+++|+ ||+++++++.+.+   +.+||
T Consensus       249 ~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          249 TWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP  312 (582)
T ss_dssp             EEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred             cceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence                9999999999999999999998  55443   344778999999 9999998888754   55543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=2.2e-25  Score=190.13  Aligned_cols=252  Identities=13%  Similarity=0.104  Sum_probs=185.7

Q ss_pred             EEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccC-CCCceEEEEeecCC-CcceEEE
Q psy15421         72 SASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKT-REGNVRVSRELPGH-TGYLSCC  149 (340)
Q Consensus        72 s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~~~~-~~~v~~~  149 (340)
                      +.+.|++|++||+.+++.. .+..|...+.+++|+|++++|++++ ++.+.+|++.. +..    ......+ ...+..+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~   90 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP----EKVDTGFATICNNDH   90 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC----EECCCTTCCCBCSCC
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc----eEeccccccccccce
Confidence            4568999999999887755 4445678899999999999999886 78999999976 432    1223334 3567778


Q ss_pred             EEcCCC-eEEEEe--CCCeEEEE--ECCCCceEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECC--CCeeeeE
Q psy15421        150 RFLDDN-QIVTSS--GDMSCALW--DIETGQQCASFIGHTGDVMSLSLAPDMRTFV-SGACDASAKLWDIR--DGSCKQT  221 (340)
Q Consensus       150 ~~~~~~-~l~~~~--~d~~v~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-sg~~dg~i~~wd~~--~~~~~~~  221 (340)
                      .|++++ .+++++  .++...+|  ++.+++ ...+.. ...+..++|+|+++.++ +++.|+.+++|+++  .+. ...
T Consensus        91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~  167 (297)
T 2ojh_A           91 GISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETR  167 (297)
T ss_dssp             EECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEE
T ss_pred             EECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceE
Confidence            888775 566666  33445555  555444 333333 34588999999999877 78889999999853  333 455


Q ss_pred             ecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCc-CCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCC--------
Q psy15421        222 FPGHESDINAVTFFPNGWAFATGS-DDATCRLFDIR-ADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD--------  291 (340)
Q Consensus       222 ~~~h~~~v~~v~~~~~~~~l~s~s-~d~~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d--------  291 (340)
                      +..|...+.+++|+|++++++.++ .++.+++|++. ....+..+..  ....+..++|+|++++|++++.+        
T Consensus       168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~  245 (297)
T 2ojh_A          168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD--SAYGDWFPHPSPSGDKVVFVSYDADVFDHPR  245 (297)
T ss_dssp             CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC--CSEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred             cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec--CCcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence            666788899999999999888766 58999999986 3334433322  22357889999999999988765        


Q ss_pred             ---CcEEEEeCCCcee--eeeeccCCcceEEEEECCCCCEEEEeeCCC
Q psy15421        292 ---FNCNVWDSMKTER--AGILAGHDNRVSCLGVTEDGMAVATGSWDS  334 (340)
Q Consensus       292 ---~~i~iw~~~~~~~--~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~  334 (340)
                         +.|.+||..+++.  +..+.+|...+.+++|+|||++|++++.|.
T Consensus       246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          246 DLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             cCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence               5699999877654  444558889999999999999999887764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.95  E-value=3.2e-25  Score=221.37  Aligned_cols=286  Identities=10%  Similarity=0.100  Sum_probs=209.0

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCC------CeEEEEeCCCCCeeEEeeCCCCcE-------EEEEECCCCCEEEE
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQD------GKLIVWDSYTTNKVHAIPLRSSWV-------MTCAYAPSGSFVAC  114 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~i-------~~v~~~~~~~~l~~  114 (340)
                      .+.+.+|...+.+++|||||++|++++.+      ..|++||+.+++ ...+..|...+       ..++|+|||+++++
T Consensus        45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~  123 (1045)
T 1k32_A           45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS  123 (1045)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEE
Confidence            46788999999999999999999988654      479999988765 56677777777       89999999997777


Q ss_pred             EeCC----C--eEEEEEccCCCCce-------------------------------------E--------EEEeecCCC
Q psy15421        115 GGLD----N--ICSIYSLKTREGNV-------------------------------------R--------VSRELPGHT  143 (340)
Q Consensus       115 ~~~d----~--~v~i~~~~~~~~~~-------------------------------------~--------~~~~~~~~~  143 (340)
                      ++.+    +  .+.+|++..+....                                     .        ....+.+|.
T Consensus       124 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~  203 (1045)
T 1k32_A          124 TDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS  203 (1045)
T ss_dssp             ECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS
T ss_pred             ECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC
Confidence            7754    3  46666654321000                                     0        001123455


Q ss_pred             cceEEEEEcCCCeEEEEeCCCeEEEEECCC-CceEE---------------------------------------EEec-
Q psy15421        144 GYLSCCRFLDDNQIVTSSGDMSCALWDIET-GQQCA---------------------------------------SFIG-  182 (340)
Q Consensus       144 ~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~---------------------------------------~~~~-  182 (340)
                      ..+....|.++..+++++.|+.+.+|.+.. +....                                       .+.. 
T Consensus       204 ~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~  283 (1045)
T 1k32_A          204 THVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIG  283 (1045)
T ss_dssp             SCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCC
T ss_pred             CcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccC
Confidence            555555665553344555566667775432 11111                                       1111 


Q ss_pred             ----------CCCCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCC-CeEEEEEecCCCEEEEEeCCCcE
Q psy15421        183 ----------HTGDVMSLSLA-PDMRTFVSGACDASAKLWDIRDGSCKQTFPGHES-DINAVTFFPNGWAFATGSDDATC  250 (340)
Q Consensus       183 ----------~~~~v~~~~~~-~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~-~v~~v~~~~~~~~l~s~s~d~~i  250 (340)
                                |...+.+++|+ |+++.+++++ ++.|.+|++..+... .+..|.. .+..++|+ +|+.++.++.+..+
T Consensus       284 ~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l  360 (1045)
T 1k32_A          284 DLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDF  360 (1045)
T ss_dssp             CCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEE
T ss_pred             cccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCce
Confidence                      12247788899 9998888777 788999998877643 3566776 89999999 99999999988888


Q ss_pred             E-EEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEE
Q psy15421        251 R-LFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVAT  329 (340)
Q Consensus       251 ~-iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s  329 (340)
                      . +||....+.....   .....+..++|+|||++|++++.++.|++||..+++....+.+|.+.+.+++|||||++|++
T Consensus       361 ~~~~d~~~~~~~~l~---~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~  437 (1045)
T 1k32_A          361 LGIYDYRTGKAEKFE---ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAY  437 (1045)
T ss_dssp             EEEEETTTCCEEECC---CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEE
T ss_pred             EEEEECCCCCceEec---CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEE
Confidence            8 8998876544332   22345889999999999999999999999999998887777789999999999999999998


Q ss_pred             eeCCC----------cEEecC
Q psy15421        330 GSWDS----------FLRIWN  340 (340)
Q Consensus       330 ~s~D~----------~i~iW~  340 (340)
                      ++.++          .|++||
T Consensus       438 ~~~~~~~~~~~~~~~~i~l~d  458 (1045)
T 1k32_A          438 GFPLKHGETDGYVMQAIHVYD  458 (1045)
T ss_dssp             EEEECSSTTCSCCEEEEEEEE
T ss_pred             EecCccccccCCCCCeEEEEE
Confidence            88754          899996

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=8.3e-25  Score=190.49  Aligned_cols=261  Identities=16%  Similarity=0.099  Sum_probs=193.6

Q ss_pred             CeEEEEeCCCeEEEEeCCCCCeeEEeeCCCC--cEEEEEECCCCCEE-EEEeCCCeEEEEEccCCCCceEEEEeecC---
Q psy15421         68 RNLVSASQDGKLIVWDSYTTNKVHAIPLRSS--WVMTCAYAPSGSFV-ACGGLDNICSIYSLKTREGNVRVSRELPG---  141 (340)
Q Consensus        68 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~i~~v~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~---  141 (340)
                      +++++++.++.|++||..+++.+..+.....  .+..++|+|+++++ +++..++.|.+|++.+++...  ......   
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~   79 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG--RIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE--EEECCBTTE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe--eEEcCCccc
Confidence            4789999999999999999888777764432  46788999999876 455567899999987654211  111111   


Q ss_pred             CCcceEEEEEcCCC-eEEEEe------------CCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q psy15421        142 HTGYLSCCRFLDDN-QIVTSS------------GDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASA  208 (340)
Q Consensus       142 ~~~~v~~~~~~~~~-~l~~~~------------~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i  208 (340)
                      |...+..+.|++++ .++.+.            .++.|.+||+.+++....+.. ...+.+++|+|++++++++  ++.|
T Consensus        80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i  156 (337)
T 1pby_B           80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDL  156 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSE
T ss_pred             ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeE
Confidence            11234556777766 566554            579999999998887766654 4567889999999988877  7899


Q ss_pred             EEEECCCCeeeeEecCCC--CCeEEEEEecCCCEEEEEeCC-C-----------------------cEEEEeCcCCcEEE
Q psy15421        209 KLWDIRDGSCKQTFPGHE--SDINAVTFFPNGWAFATGSDD-A-----------------------TCRLFDIRADQELA  262 (340)
Q Consensus       209 ~~wd~~~~~~~~~~~~h~--~~v~~v~~~~~~~~l~s~s~d-~-----------------------~i~iwd~~~~~~~~  262 (340)
                      .+||+.+++....++.+.  .+   +.|+|++..++..+.+ +                       .|.+||..+++.. 
T Consensus       157 ~~~d~~~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-  232 (337)
T 1pby_B          157 HVMDPEAGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-  232 (337)
T ss_dssp             EEEETTTTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-
T ss_pred             EEEECCCCcEeeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-
Confidence            999999998877776443  33   3788988766544432 2                       4689999887654 


Q ss_pred             EeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        263 MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       263 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ..........+..++|+|++++++++  ++.|.+||..+++....+.. ...+.+++|+|||++|++++.|+.|++||
T Consensus       233 ~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d  307 (337)
T 1pby_B          233 MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence            22222222357789999999999988  68999999988887776653 35678999999999999899999999996

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=1.7e-24  Score=216.19  Aligned_cols=278  Identities=12%  Similarity=0.055  Sum_probs=217.8

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCC-CCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYT-TNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      .+.+.+|...+.++.|+++ .++++++.|++++||.... +.....+..|.. +...+|+|+|++++.+ .++.+.+|++
T Consensus       196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~~SpDG~~la~~-~~~~i~~~d~  272 (1045)
T 1k32_A          196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFS-KGGSIYIFNP  272 (1045)
T ss_dssp             EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEE-ETTEEEEECT
T ss_pred             eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCC-cceeeEcCCCCEEEEE-eCCEEEEecC
Confidence            3456899999999999988 6777888899999997643 333444444443 4567899999998887 5889999998


Q ss_pred             cCCCCceEEEEeecC-----------CCcceEEEEEc-CCCe-EEEEeCCCeEEEEECCCCceEEEEecCCC-CeEEEEE
Q psy15421        127 KTREGNVRVSRELPG-----------HTGYLSCCRFL-DDNQ-IVTSSGDMSCALWDIETGQQCASFIGHTG-DVMSLSL  192 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~  192 (340)
                      ...  ..  . .+..           |...+..+.|+ +++. ++.++ ++.+.+|++..++.. .+..|.. .+..++|
T Consensus       273 ~~~--~l--~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~  345 (1045)
T 1k32_A          273 DTE--KI--E-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGG  345 (1045)
T ss_dssp             TTC--CE--E-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECS
T ss_pred             Cce--Ee--e-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeE
Confidence            322  11  1 2333           34467888898 8875 55554 889999999877643 4566777 7899999


Q ss_pred             cCCCCEEEEEeCCCcEE-EEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCccc
Q psy15421        193 APDMRTFVSGACDASAK-LWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIIC  271 (340)
Q Consensus       193 ~~~~~~~~sg~~dg~i~-~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~  271 (340)
                      + +++.++.++.++.+. +||+..+.... +.+|...+..++|+|||+++++++.++.|++||+.+++.......  +..
T Consensus       346 s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~--~~~  421 (1045)
T 1k32_A          346 D-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS--REA  421 (1045)
T ss_dssp             S-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSS
T ss_pred             c-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC--CCC
Confidence            9 999999988888898 99998776543 447888999999999999999999999999999988776555421  223


Q ss_pred             ceEEEEEcCCCcEEEEEeCCC----------cEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        272 GITSVAFSRSGRLLLAGYDDF----------NCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       272 ~i~~~~~s~~~~~l~~g~~d~----------~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .+..++|+|||++|++++.++          .|++||..+++ ...+..|...+..++|+|||++|+.++.++..++|+
T Consensus       422 ~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          422 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence            477899999999999887654          89999988876 667778988999999999999999999888777774

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=4.9e-24  Score=205.51  Aligned_cols=265  Identities=11%  Similarity=0.089  Sum_probs=192.9

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC--eeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceE
Q psy15421         57 KIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN--KVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVR  134 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~  134 (340)
                      .|.+++|+|||++|++++. +.|++||+.++.  ....+..+...+..++|+|||++|+.++ ++.|.+|++.++.    
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~----  183 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR----  183 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE----
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC----
Confidence            3889999999999999887 999999998873  3445566677899999999999999887 4589999987542    


Q ss_pred             EEEeecCCCcc----------------eEEEEEcCCC-eEEEEeCCC---------------------------------
Q psy15421        135 VSRELPGHTGY----------------LSCCRFLDDN-QIVTSSGDM---------------------------------  164 (340)
Q Consensus       135 ~~~~~~~~~~~----------------v~~~~~~~~~-~l~~~~~d~---------------------------------  164 (340)
                      .......+...                +..+.|++++ .|+.++.|+                                 
T Consensus       184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~  263 (741)
T 2ecf_A          184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV  263 (741)
T ss_dssp             EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred             EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence            11111122211                3557788776 477766554                                 


Q ss_pred             eEEEEECCC-CceEEEEe--cCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCeeeeEecCCCC----CeEEE
Q psy15421        165 SCALWDIET-GQQCASFI--GHTGDVMSLSLAPDMRTFVSGAC-----DASAKLWDIRDGSCKQTFPGHES----DINAV  232 (340)
Q Consensus       165 ~v~iwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~~sg~~-----dg~i~~wd~~~~~~~~~~~~h~~----~v~~v  232 (340)
                      .|.+||+.+ ++......  .|...+..++| ||++.++.++.     +..|.+||+.++++...+..+..    .+..+
T Consensus       264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~  342 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSL  342 (741)
T ss_dssp             EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCC
T ss_pred             EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCce
Confidence            788999988 76544332  36677899999 99999886653     67899999999987766655443    45688


Q ss_pred             EEecCCCEEEEEeCCCcEEEEeCc-CCcEEEEeecCCcccceEEE-EEcCCCcEEE-EEeCCC--cEEEEeCCC-ceeee
Q psy15421        233 TFFPNGWAFATGSDDATCRLFDIR-ADQELAMYSHDNIICGITSV-AFSRSGRLLL-AGYDDF--NCNVWDSMK-TERAG  306 (340)
Q Consensus       233 ~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~-~g~~d~--~i~iw~~~~-~~~~~  306 (340)
                      +|+|||+.+++++.|+.++||.+. .++ ...+...  ...+..+ .|+|+++.|+ +++.++  .+++|+... +....
T Consensus       343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~  419 (741)
T 2ecf_A          343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ  419 (741)
T ss_dssp             EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCE
T ss_pred             EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee
Confidence            999999999999999988888765 233 3333221  2346666 5999998775 455555  899998753 44455


Q ss_pred             eeccCCcceEEEEECCCCCEEEEeeC
Q psy15421        307 ILAGHDNRVSCLGVTEDGMAVATGSW  332 (340)
Q Consensus       307 ~~~~h~~~i~~~~~s~d~~~l~s~s~  332 (340)
                      .+.. ...+..++|||||++|+....
T Consensus       420 ~l~~-~~~~~~~~~spdg~~l~~~~~  444 (741)
T 2ecf_A          420 RLSK-APGMHSASFARNASVYVDSWS  444 (741)
T ss_dssp             ECCC-SCSEEEEEECTTSSEEEEEEE
T ss_pred             eccc-CCCceEEEECCCCCEEEEEec
Confidence            5554 667889999999998875543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=5.3e-24  Score=181.54  Aligned_cols=240  Identities=15%  Similarity=0.111  Sum_probs=179.2

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCC-CCeeEEeeCC-CCcEEEEEECCCCCEEEEEe--CCCeEEE
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYT-TNKVHAIPLR-SSWVMTCAYAPSGSFVACGG--LDNICSI  123 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~-~~~i~~v~~~~~~~~l~~~~--~d~~v~i  123 (340)
                      ...+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|+++++++++  .++..++
T Consensus        34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l  112 (297)
T 2ojh_A           34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAI  112 (297)
T ss_dssp             EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEE
T ss_pred             eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceE
Confidence            345667899999999999999999876 78999999998 7766655555 35678899999999999998  4456677


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEcCCCe-EE-EEeCCCeEEEEECCC-CceEEEEecCCCCeEEEEEcCCCCEEE
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IV-TSSGDMSCALWDIET-GQQCASFIGHTGDVMSLSLAPDMRTFV  200 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~  200 (340)
                      |.+....+..   ..+..+. .+..+.|++++. ++ ++..++.+.+|++.. ......+..+...+.+++|+|+++.++
T Consensus       113 ~~~~~~~~~~---~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  188 (297)
T 2ojh_A          113 YLLPSTGGTP---RLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIY  188 (297)
T ss_dssp             EEEETTCCCC---EECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEE
T ss_pred             EEEECCCCce---EEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEE
Confidence            7765433322   2222333 366778887654 54 677799999998642 234456667888899999999999877


Q ss_pred             EEe-CCCcEEEEECC-CCeeeeEecCCCCCeEEEEEecCCCEEEEEeCC-----------CcEEEEeCcCCcEEEEeecC
Q psy15421        201 SGA-CDASAKLWDIR-DGSCKQTFPGHESDINAVTFFPNGWAFATGSDD-----------ATCRLFDIRADQELAMYSHD  267 (340)
Q Consensus       201 sg~-~dg~i~~wd~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d-----------~~i~iwd~~~~~~~~~~~~~  267 (340)
                      .++ .++.+++|++. .+.....+..|...+.+++|+|++++++.++.+           +.|++||+.+++........
T Consensus       189 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~  268 (297)
T 2ojh_A          189 FNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF  268 (297)
T ss_dssp             EEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE
T ss_pred             EEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC
Confidence            665 59999999886 455566777788889999999999999988876           56999999876543332211


Q ss_pred             CcccceEEEEEcCCCcEEEEEeCCC
Q psy15421        268 NIICGITSVAFSRSGRLLLAGYDDF  292 (340)
Q Consensus       268 ~~~~~i~~~~~s~~~~~l~~g~~d~  292 (340)
                      .+...+..++|+|++++|++++.+.
T Consensus       269 ~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          269 GGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCCcccccceECCCCCEEEEEEecc
Confidence            2223477889999999998877653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=2.1e-23  Score=200.03  Aligned_cols=273  Identities=13%  Similarity=0.093  Sum_probs=193.7

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccC-----CC
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKT-----RE  130 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~-----~~  130 (340)
                      ..|.+++|+|| +.++.+ .|+.|++||+.+++.. .+..+...+..++|+|||++++++ .++.|.+|++.+     +.
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            56999999999 665554 4599999999877554 344455667788999999999985 689999999976     43


Q ss_pred             CceEEEEeecCCCc--------------ceEEEEEcCCC-eEEEEe---------------------------------C
Q psy15421        131 GNVRVSRELPGHTG--------------YLSCCRFLDDN-QIVTSS---------------------------------G  162 (340)
Q Consensus       131 ~~~~~~~~~~~~~~--------------~v~~~~~~~~~-~l~~~~---------------------------------~  162 (340)
                      ..    .....+..              .+..+.|++++ .|++++                                 .
T Consensus       158 ~~----~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~  233 (706)
T 2z3z_A          158 AI----AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSH  233 (706)
T ss_dssp             CE----ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCC
T ss_pred             cE----EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCC
Confidence            21    11111222              14667888776 466665                                 4


Q ss_pred             CCeEEEEECCCCceEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC-eeeeEec-CCCC---CeE
Q psy15421        163 DMSCALWDIETGQQCASFI--GHTGDVMSLSLAPDMRTFVSGACDA-----SAKLWDIRDG-SCKQTFP-GHES---DIN  230 (340)
Q Consensus       163 d~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~sg~~dg-----~i~~wd~~~~-~~~~~~~-~h~~---~v~  230 (340)
                      +..|.+||+.+++......  .|...+.+++|+||++.+++++.++     .|.+||+.++ ....... .+..   .+.
T Consensus       234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~  313 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLH  313 (706)
T ss_dssp             EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCS
T ss_pred             eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccC
Confidence            5679999999887543332  4666789999999999999887776     9999999998 4333222 1222   246


Q ss_pred             EEEEec--CCCEEEEEeCCCcEEEEeCc-CCcEEEEeecCCcccceEE-EEEcCCCcEEEEEeC-CC----cEEEEeCCC
Q psy15421        231 AVTFFP--NGWAFATGSDDATCRLFDIR-ADQELAMYSHDNIICGITS-VAFSRSGRLLLAGYD-DF----NCNVWDSMK  301 (340)
Q Consensus       231 ~v~~~~--~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~g~~-d~----~i~iw~~~~  301 (340)
                      +++|+|  +|+++++++.|+.+++|++. .++.+..+...  ...+.. ++|+|+++.|+.++. ++    .|..|+..+
T Consensus       314 ~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~--~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  391 (706)
T 2z3z_A          314 PLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG--EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG  391 (706)
T ss_dssp             CCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS--SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred             CceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC--CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence            789999  99999999999999999876 44444444222  233555 799999988766554 44    666777666


Q ss_pred             ceeeeeeccCCcceEEEEECCCCCEEEEeeCC----CcEEecC
Q psy15421        302 TERAGILAGHDNRVSCLGVTEDGMAVATGSWD----SFLRIWN  340 (340)
Q Consensus       302 ~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D----~~i~iW~  340 (340)
                      ++ ...+ .|...+.+++|||||++|+....+    +.|++||
T Consensus       392 ~~-~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d  432 (706)
T 2z3z_A          392 GK-TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN  432 (706)
T ss_dssp             CC-CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred             CC-ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence            54 3333 367789999999999988765443    4588885

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=6.8e-24  Score=203.47  Aligned_cols=265  Identities=10%  Similarity=0.060  Sum_probs=188.8

Q ss_pred             EEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCee-EEeeCCC-----------------CcEEEEEECCCCCEEEEEeCCC
Q psy15421         58 IYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKV-HAIPLRS-----------------SWVMTCAYAPSGSFVACGGLDN  119 (340)
Q Consensus        58 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~-----------------~~i~~v~~~~~~~~l~~~~~d~  119 (340)
                      +..+.|.  +..+++++.|+ | +||+.+++.+ ..+..+.                 ..+.+++|+|+ .+++.+ .++
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~  101 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG  101 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence            4557777  66788888888 8 9999988762 2222221                 45899999999 665555 459


Q ss_pred             eEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCC-----CceEEEEecCCCC--------
Q psy15421        120 ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIET-----GQQCASFIGHTGD--------  186 (340)
Q Consensus       120 ~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~-----~~~~~~~~~~~~~--------  186 (340)
                      .+++|++.++.  .   ..+..+...+..+.|++++..++...++.|.+||+.+     ++.......+...        
T Consensus       102 ~i~~~d~~~~~--~---~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~  176 (706)
T 2z3z_A          102 GLVGFDMLARK--V---TYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH  176 (706)
T ss_dssp             EEEEEETTTTE--E---EEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred             EEEEEECCCCc--e---EEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence            99999987642  1   2233445556677888887544446789999999998     7655433333332        


Q ss_pred             ------eEEEEEcCCCCEEEEEe---------------------------------CCCcEEEEECCCCeeeeEec--CC
Q psy15421        187 ------VMSLSLAPDMRTFVSGA---------------------------------CDASAKLWDIRDGSCKQTFP--GH  225 (340)
Q Consensus       187 ------v~~~~~~~~~~~~~sg~---------------------------------~dg~i~~wd~~~~~~~~~~~--~h  225 (340)
                            +.+++|+||++.+++++                                 .+..|.+||+.+++......  .|
T Consensus       177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~  256 (706)
T 2z3z_A          177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK  256 (706)
T ss_dssp             GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred             hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence                  47899999999999887                                 45789999999887654432  46


Q ss_pred             CCCeEEEEEecCCCEEEEEeCCC-----cEEEEeCcCCcEEE-Eee--cCCcccceEEEEEcC--CCcEEEEEeCCCcEE
Q psy15421        226 ESDINAVTFFPNGWAFATGSDDA-----TCRLFDIRADQELA-MYS--HDNIICGITSVAFSR--SGRLLLAGYDDFNCN  295 (340)
Q Consensus       226 ~~~v~~v~~~~~~~~l~s~s~d~-----~i~iwd~~~~~~~~-~~~--~~~~~~~i~~~~~s~--~~~~l~~g~~d~~i~  295 (340)
                      ...+..++|+|||+.+++++.++     .|++||..+++... ...  .......+..++|+|  +|++++++..|+.++
T Consensus       257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~  336 (706)
T 2z3z_A          257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH  336 (706)
T ss_dssp             TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred             ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccE
Confidence            67799999999999999988776     89999998873322 221  111111245689999  999999999999999


Q ss_pred             EEeCC-CceeeeeeccCCcceEE-EEECCCCCEEEEeeCC
Q psy15421        296 VWDSM-KTERAGILAGHDNRVSC-LGVTEDGMAVATGSWD  333 (340)
Q Consensus       296 iw~~~-~~~~~~~~~~h~~~i~~-~~~s~d~~~l~s~s~D  333 (340)
                      +|... ++.....+..|...+.. ++|+|||+.|+.++.+
T Consensus       337 l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          337 LYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             EEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred             EEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence            99865 56667778888888876 8999999877655544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=2.6e-22  Score=175.04  Aligned_cols=266  Identities=14%  Similarity=0.179  Sum_probs=182.0

Q ss_pred             CccCcEEEEEEcCCCCeEEEEeCC-CeEEEEeCC--CCCe--eEEeeCCCCcEEEEEECCCCCEEEEEeC-CCeEEEEEc
Q psy15421         53 GHLAKIYAMHWGSDSRNLVSASQD-GKLIVWDSY--TTNK--VHAIPLRSSWVMTCAYAPSGSFVACGGL-DNICSIYSL  126 (340)
Q Consensus        53 ~h~~~v~~~~~s~~~~~l~s~~~d-~~i~iwd~~--~~~~--~~~~~~~~~~i~~v~~~~~~~~l~~~~~-d~~v~i~~~  126 (340)
                      .|...+.+++|+|++++|++++.+ +.|++|++.  +++.  +..+..+. .+..++|+|+++++++++. ++.+.+|++
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence            467789999999999999988886 999999987  4443  33444444 6788999999998877665 888999999


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEe-CCCeEEEEECCC-CceEE----EEec-CCCCeEEEEEcCCCCE
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSS-GDMSCALWDIET-GQQCA----SFIG-HTGDVMSLSLAPDMRT  198 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~d~~v~iwd~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~  198 (340)
                      ..+ ........+..+. .+..+.|.+++ .+++++ .++.|.+||+.+ ++...    .+.. ....+..++|+|++++
T Consensus       114 ~~~-~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~  191 (343)
T 1ri6_A          114 EDG-LPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY  191 (343)
T ss_dssp             ETT-EEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred             CCC-ccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE
Confidence            622 1222333333333 46667787765 466665 799999999987 54322    2222 3446889999999997


Q ss_pred             EEE-EeCCCcEEEEECCC--Cee--eeEec----CC--CCCeEEEEEecCCCEEE-EEeCCCcEEEEeCcC--C--cEEE
Q psy15421        199 FVS-GACDASAKLWDIRD--GSC--KQTFP----GH--ESDINAVTFFPNGWAFA-TGSDDATCRLFDIRA--D--QELA  262 (340)
Q Consensus       199 ~~s-g~~dg~i~~wd~~~--~~~--~~~~~----~h--~~~v~~v~~~~~~~~l~-s~s~d~~i~iwd~~~--~--~~~~  262 (340)
                      +++ +..++.|.+||+..  ++.  ...+.    ++  ...+..++|+|++++++ ++..++.|++||+..  +  +.+.
T Consensus       192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~  271 (343)
T 1ri6_A          192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG  271 (343)
T ss_dssp             EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEee
Confidence            654 45899999999953  432  22222    11  23567899999998776 555799999999972  2  2232


Q ss_pred             EeecCCcccceEEEEEcCCCcEEEEEe-CCCcEEEEe--CCCce--eeeeeccCCcceEEEEECCCCC
Q psy15421        263 MYSHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWD--SMKTE--RAGILAGHDNRVSCLGVTEDGM  325 (340)
Q Consensus       263 ~~~~~~~~~~i~~~~~s~~~~~l~~g~-~d~~i~iw~--~~~~~--~~~~~~~h~~~i~~~~~s~d~~  325 (340)
                      .+...   ..+..++|+|++++|++++ .++.+.+|+  ..+++  .+..+.. .....+++|.|+..
T Consensus       272 ~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          272 FQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG  335 (343)
T ss_dssp             EEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred             eecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence            33222   2377899999999888887 689999994  44543  3333333 24456777777543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=4e-22  Score=174.84  Aligned_cols=262  Identities=8%  Similarity=0.045  Sum_probs=176.4

Q ss_pred             CCCeEEEEeC--CCCCeeE-EeeCCCCcEEEEEECCCCCEEEEEeC---CCeEEEEEccCCCCceEEEEeecCCCcceEE
Q psy15421         75 QDGKLIVWDS--YTTNKVH-AIPLRSSWVMTCAYAPSGSFVACGGL---DNICSIYSLKTREGNVRVSRELPGHTGYLSC  148 (340)
Q Consensus        75 ~d~~i~iwd~--~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~  148 (340)
                      .++.|.+|++  .+++... ....+...+..++|+|+|+ +++++.   ++.|.+|++..+.  ......+..+......
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~--~~~~~~~~~~~~~p~~   90 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT--AHKLNTVVAPGTPPAY   90 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE--EEEEEEEEEESCCCSE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc--EEEeeeeecCCCCCEE
Confidence            3566777755  3444322 2223345567789999999 555544   6899999996432  3333343445556667


Q ss_pred             EEEcCCC-eEEEEe-CCCeEEEEECCC-Cc--eEEEEec---------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy15421        149 CRFLDDN-QIVTSS-GDMSCALWDIET-GQ--QCASFIG---------HTGDVMSLSLAPDMRTFVSGACDASAKLWDIR  214 (340)
Q Consensus       149 ~~~~~~~-~l~~~~-~d~~v~iwd~~~-~~--~~~~~~~---------~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~  214 (340)
                      +.+++++ .+++++ .++.+.+|++.. +.  .+..+..         ....+.+++|+|+++++++...++.|.+|++.
T Consensus        91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A           91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEEC
Confidence            7887776 466666 689999999963 22  2222221         11247889999999977777789999999998


Q ss_pred             -CCeeee--EecC-CCCCeEEEEEecCCCEEEE-EeCCCcEEEEeCcC--CcE--EEEeecCCc----ccceEEEEEcCC
Q psy15421        215 -DGSCKQ--TFPG-HESDINAVTFFPNGWAFAT-GSDDATCRLFDIRA--DQE--LAMYSHDNI----ICGITSVAFSRS  281 (340)
Q Consensus       215 -~~~~~~--~~~~-h~~~v~~v~~~~~~~~l~s-~s~d~~i~iwd~~~--~~~--~~~~~~~~~----~~~i~~~~~s~~  281 (340)
                       +++...  .+.. ....+..++|+|+|+++++ +..++.|++|++..  ++.  +........    ...+..++|+|+
T Consensus       171 ~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd  250 (347)
T 3hfq_A          171 DAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD  250 (347)
T ss_dssp             TTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT
T ss_pred             CCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC
Confidence             554322  2222 2336788999999996554 56788999999874  332  112211111    124788999999


Q ss_pred             CcEE-EEEeCCCcEEEEeCC---CceeeeeeccCCcceEEEEECCCCCEEEEeeCC-CcEEec
Q psy15421        282 GRLL-LAGYDDFNCNVWDSM---KTERAGILAGHDNRVSCLGVTEDGMAVATGSWD-SFLRIW  339 (340)
Q Consensus       282 ~~~l-~~g~~d~~i~iw~~~---~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D-~~i~iW  339 (340)
                      |++| ++...++.|.+|+..   ..+.+..+..|...+..++|+|||++|++++.+ +.|.+|
T Consensus       251 G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          251 GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY  313 (347)
T ss_dssp             SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence            9987 456678999999976   334555666677778999999999988877764 899998

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.92  E-value=6.7e-22  Score=174.42  Aligned_cols=264  Identities=11%  Similarity=0.070  Sum_probs=178.2

Q ss_pred             eCCCeEEEEeC--CCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC----CeEEEEEccCCCCceEEEEeecCCCcceE
Q psy15421         74 SQDGKLIVWDS--YTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD----NICSIYSLKTREGNVRVSRELPGHTGYLS  147 (340)
Q Consensus        74 ~~d~~i~iwd~--~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~~~~~~~v~  147 (340)
                      +.++.|++|.+  .+++.......+...+..++|+|++++|++++.+    +.+.+|++....+..........+.....
T Consensus        24 ~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~  103 (361)
T 3scy_A           24 GNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC  103 (361)
T ss_dssp             SSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE
Confidence            34678999865  4555432222255566778999999999998886    79999999765455444444444444455


Q ss_pred             EEEEcCCCeEEEEe-CCCeEEEEECCCCceEE---EEecC-----------CCCeEEEEEcCCCCEEEE-EeCCCcEEEE
Q psy15421        148 CCRFLDDNQIVTSS-GDMSCALWDIETGQQCA---SFIGH-----------TGDVMSLSLAPDMRTFVS-GACDASAKLW  211 (340)
Q Consensus       148 ~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~~---~~~~~-----------~~~v~~~~~~~~~~~~~s-g~~dg~i~~w  211 (340)
                      .+.+ ++..+++++ .++.+.+|++.....+.   ....+           ...+.+++|+|+++++++ +..++.|.+|
T Consensus       104 ~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~  182 (361)
T 3scy_A          104 YLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKF  182 (361)
T ss_dssp             EEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEE
Confidence            5556 555565555 58899999997543221   11111           223578999999996655 4468999999


Q ss_pred             ECCCCe-------e------eeEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCcCCcEE--EEeec-CCcccceE
Q psy15421        212 DIRDGS-------C------KQTFPGHESDINAVTFFPNGWAFATGS-DDATCRLFDIRADQEL--AMYSH-DNIICGIT  274 (340)
Q Consensus       212 d~~~~~-------~------~~~~~~h~~~v~~v~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~--~~~~~-~~~~~~i~  274 (340)
                      ++....       .      ......+...+..++|+|+|+++++++ .++.|.+||+.++...  ..... ......+.
T Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~  262 (361)
T 3scy_A          183 NINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSG  262 (361)
T ss_dssp             EECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEE
T ss_pred             EEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcc
Confidence            887543       1      111223445678999999999877766 6899999999865432  22211 11123467


Q ss_pred             EEEEcCCCcEEEEEeC--CCcEEEEeCC--Cce--eeeeeccCCcceEEEEECCCCCEEEEee-CCCcEEec
Q psy15421        275 SVAFSRSGRLLLAGYD--DFNCNVWDSM--KTE--RAGILAGHDNRVSCLGVTEDGMAVATGS-WDSFLRIW  339 (340)
Q Consensus       275 ~~~~s~~~~~l~~g~~--d~~i~iw~~~--~~~--~~~~~~~h~~~i~~~~~s~d~~~l~s~s-~D~~i~iW  339 (340)
                      .++|+|||++|+++..  ++.|.+|+..  +++  .+..+.. ...+..++|+|||++|++++ .++.|.+|
T Consensus       263 ~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~  333 (361)
T 3scy_A          263 DIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIF  333 (361)
T ss_dssp             EEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred             cEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEE
Confidence            8999999999876665  4899999974  333  3444443 45788999999999888877 67889986

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=9.9e-22  Score=170.97  Aligned_cols=270  Identities=12%  Similarity=0.096  Sum_probs=185.6

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeC-CCeEEEEeCCCCCe-eEEeeCCCCcEEEEEECCCCCEEEEEeCCC---eE
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQ-DGKLIVWDSYTTNK-VHAIPLRSSWVMTCAYAPSGSFVACGGLDN---IC  121 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~-~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~---~v  121 (340)
                      ....+..+.... .++|+|+++++++++. ++.|.+||..+++. ...+..+..+..+++|+|++++++++..++   .|
T Consensus        32 ~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i  110 (331)
T 3u4y_A           32 ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNM  110 (331)
T ss_dssp             EEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEE
T ss_pred             eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccE
Confidence            344455556667 9999999997666655 89999999998887 666666666655589999999999655553   89


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCCCe-EE-EEeCCCe-EEEEECCCCceE----EEEecCCCCeEEEEEcC
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IV-TSSGDMS-CALWDIETGQQC----ASFIGHTGDVMSLSLAP  194 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~d~~-v~iwd~~~~~~~----~~~~~~~~~v~~~~~~~  194 (340)
                      .+|++.+++    ....++.+. ....+.|++++. ++ +...++. +.+|++.....+    .........+..++|+|
T Consensus       111 ~v~d~~~~~----~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp  185 (331)
T 3u4y_A          111 QSYSFLKNK----FISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP  185 (331)
T ss_dssp             EEEETTTTE----EEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT
T ss_pred             EEEECCCCC----eEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC
Confidence            999987643    222333332 346778887763 44 4455678 999998754332    22223455689999999


Q ss_pred             CCCEEE-EEeCCCcEEEEECCCCee---eeEecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCcCCcE--EEEeecC
Q psy15421        195 DMRTFV-SGACDASAKLWDIRDGSC---KQTFPGHESDINAVTFFPNGWAFATG-SDDATCRLFDIRADQE--LAMYSHD  267 (340)
Q Consensus       195 ~~~~~~-sg~~dg~i~~wd~~~~~~---~~~~~~h~~~v~~v~~~~~~~~l~s~-s~d~~i~iwd~~~~~~--~~~~~~~  267 (340)
                      ++++++ ++..++.|.+||+++++.   +..+..+ ..+..++|+|+|++++.+ ..++.|.+||..+++.  +..+...
T Consensus       186 dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~  264 (331)
T 3u4y_A          186 DGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHG  264 (331)
T ss_dssp             TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECC
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccc
Confidence            999554 555789999999998887   6677643 567889999999966554 4578899999987765  3222211


Q ss_pred             -----CcccceEEEEEcCCCcEEEEEe-CCCcEEEEeCCCceeeeeeccCCcceEEEEECCCC
Q psy15421        268 -----NIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDG  324 (340)
Q Consensus       268 -----~~~~~i~~~~~s~~~~~l~~g~-~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~  324 (340)
                           ........++|+|++++|++++ .++.|.+|++.... .....+.+..-....++|++
T Consensus       265 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~-~~~~~~~~~~g~~~~~~~~~  326 (331)
T 3u4y_A          265 LLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV-VGYVAGIEANGGIAICHPDK  326 (331)
T ss_dssp             CCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE-EEECTTCCCBSCEEECCCC-
T ss_pred             cccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc-ccceecccccCCeEEECCcc
Confidence                 1112235689999999886655 56799999986543 33344443333334456654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=7.5e-23  Score=196.67  Aligned_cols=275  Identities=8%  Similarity=0.048  Sum_probs=189.2

Q ss_pred             eEEecCccC---cEEEEEEcCCCCeEEEEeCC---------CeEEEEeCCCCCeeEEee---CCCCcEEEEEECCCCCEE
Q psy15421         48 RRTLRGHLA---KIYAMHWGSDSRNLVSASQD---------GKLIVWDSYTTNKVHAIP---LRSSWVMTCAYAPSGSFV  112 (340)
Q Consensus        48 ~~~~~~h~~---~v~~~~~s~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~---~~~~~i~~v~~~~~~~~l  112 (340)
                      ++.+.+|..   .|.+++|||||++|++++.+         +.+++||+.+++. ..+.   .+...+..++|+|||++|
T Consensus        50 ~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~l  128 (723)
T 1xfd_A           50 TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQL  128 (723)
T ss_dssp             EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCE
T ss_pred             EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEE
Confidence            456666665   49999999999999999875         7888999988775 2222   333447788999999999


Q ss_pred             EEEeCCCeEEEEEccCCCCceEEEEeecCCCc------------------ceEEEEEcCCC-eEEEEeCCC---------
Q psy15421        113 ACGGLDNICSIYSLKTREGNVRVSRELPGHTG------------------YLSCCRFLDDN-QIVTSSGDM---------  164 (340)
Q Consensus       113 ~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~-~l~~~~~d~---------  164 (340)
                      +.++. +.+.+|++.++... .   ....+..                  .+..+.|++++ .|+.++.|.         
T Consensus       129 a~~~~-~~i~~~~~~~g~~~-~---~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~  203 (723)
T 1xfd_A          129 IFIFE-NNIYYCAHVGKQAI-R---VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP  203 (723)
T ss_dssp             EEEET-TEEEEESSSSSCCE-E---EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred             EEEEC-CeEEEEECCCCceE-E---EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEee
Confidence            98876 78999998764321 1   1122221                  22578888876 466665432         


Q ss_pred             -------------------------eEEEEECCCCceEEEEecC------CCCeEEEEEcCCCCEEEEEeC----CCcEE
Q psy15421        165 -------------------------SCALWDIETGQQCASFIGH------TGDVMSLSLAPDMRTFVSGAC----DASAK  209 (340)
Q Consensus       165 -------------------------~v~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~sg~~----dg~i~  209 (340)
                                               .|.+||+.+++....+..+      ...+..++|+||++++++.+.    +..|.
T Consensus       204 ~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~  283 (723)
T 1xfd_A          204 TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILT  283 (723)
T ss_dssp             CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEE
T ss_pred             ccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEE
Confidence                                     7999999988754555543      557889999999998876543    46899


Q ss_pred             EEECCCCeeeeEecC-CCCCeE----EEEEecCCCEEEE--EeCCC------cEEEEe-CcCCcE--EEEeecCCcccce
Q psy15421        210 LWDIRDGSCKQTFPG-HESDIN----AVTFFPNGWAFAT--GSDDA------TCRLFD-IRADQE--LAMYSHDNIICGI  273 (340)
Q Consensus       210 ~wd~~~~~~~~~~~~-h~~~v~----~v~~~~~~~~l~s--~s~d~------~i~iwd-~~~~~~--~~~~~~~~~~~~i  273 (340)
                      +||+.++++...+.. +...+.    .++|+|||+.|+.  +..++      .|++|| ...+..  ...+....  ..+
T Consensus       284 ~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--~~~  361 (723)
T 1xfd_A          284 LCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD--WDV  361 (723)
T ss_dssp             EEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS--SCE
T ss_pred             EEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC--eEE
Confidence            999999887665543 333333    7899999997664  55677      577777 333330  22222111  124


Q ss_pred             EE-EEEcCCCcEEEEEeCC---CcEEEEeCCCc--eeeeeecc---CCcceEEEEECCCCCEEEEe
Q psy15421        274 TS-VAFSRSGRLLLAGYDD---FNCNVWDSMKT--ERAGILAG---HDNRVSCLGVTEDGMAVATG  330 (340)
Q Consensus       274 ~~-~~~s~~~~~l~~g~~d---~~i~iw~~~~~--~~~~~~~~---h~~~i~~~~~s~d~~~l~s~  330 (340)
                      .. ++|+|+|+.|+..+.+   +.+++|+....  .....+..   |...+..++|||||++|+..
T Consensus       362 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          362 TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             EEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             EeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence            33 6899999999766554   78999986532  12333443   67788999999999987753

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.91  E-value=2.9e-22  Score=178.23  Aligned_cols=286  Identities=14%  Similarity=0.017  Sum_probs=194.1

Q ss_pred             EeEEecCccCcEEE-----EEEcCCCCeEEEEeC-CCe--EEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC
Q psy15421         47 TRRTLRGHLAKIYA-----MHWGSDSRNLVSASQ-DGK--LIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD  118 (340)
Q Consensus        47 ~~~~~~~h~~~v~~-----~~~s~~~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d  118 (340)
                      ..+.|..|......     .+|+|||++|+.++. ++.  |.+||+.+++.......+...+....|+||+++|+.++.+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            34567777766666     889999999998887 674  8888998887766666665555566899999999999999


Q ss_pred             CeEEEEEccCCCCceEEEEeecCCCcceEEEE--EcCCCeEEEE-----------------------eCCCeEEEEECCC
Q psy15421        119 NICSIYSLKTREGNVRVSRELPGHTGYLSCCR--FLDDNQIVTS-----------------------SGDMSCALWDIET  173 (340)
Q Consensus       119 ~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~~-----------------------~~d~~v~iwd~~~  173 (340)
                      +.+.+|++.+++..  ...  ..+...+....  +.+++.++.+                       ..+..|.+||+.+
T Consensus       102 ~~l~~~d~~~g~~~--~~~--~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  177 (388)
T 3pe7_A          102 RNLMRVDLATLEEN--VVY--QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT  177 (388)
T ss_dssp             TEEEEEETTTCCEE--EEE--ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred             CeEEEEECCCCcce--eee--echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence            99999999865422  222  22333332222  2455544432                       2347799999998


Q ss_pred             CceEEEEecCCCCeEEEEEcC-CCCEEEEEeCC------CcEEEEECCCCeeeeEecCCC--CCeEEEEEecCCCEEEEE
Q psy15421        174 GQQCASFIGHTGDVMSLSLAP-DMRTFVSGACD------ASAKLWDIRDGSCKQTFPGHE--SDINAVTFFPNGWAFATG  244 (340)
Q Consensus       174 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~sg~~d------g~i~~wd~~~~~~~~~~~~h~--~~v~~v~~~~~~~~l~s~  244 (340)
                      ++. ..+..+...+..++|+| +++.++..+.+      ..|.++|...+.. ..+..+.  ..+..++|+|||+.|+..
T Consensus       178 g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~  255 (388)
T 3pe7_A          178 GES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYV  255 (388)
T ss_dssp             CCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred             Cce-EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEE
Confidence            864 44555667789999999 99988776653      3788888765543 3343343  357788999999977654


Q ss_pred             eCC-C----cEEEEeCcCCcEEEEeecCCcc---cceEEEEEcCCCcEEEEE---------eCCCcEEEEeCCCceeeee
Q psy15421        245 SDD-A----TCRLFDIRADQELAMYSHDNII---CGITSVAFSRSGRLLLAG---------YDDFNCNVWDSMKTERAGI  307 (340)
Q Consensus       245 s~d-~----~i~iwd~~~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~g---------~~d~~i~iw~~~~~~~~~~  307 (340)
                      +.+ +    .|++||+.+++...........   .......|+|||+.|+..         ..+..|++||..+++. ..
T Consensus       256 ~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~  334 (388)
T 3pe7_A          256 SYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HR  334 (388)
T ss_dssp             EEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EE
T ss_pred             ecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EE
Confidence            432 2    3999999877643322212100   001123799999988854         4567899999887654 44


Q ss_pred             eccCCc-----------ceEEEEECCCCCEEEEee-CCCcEEec
Q psy15421        308 LAGHDN-----------RVSCLGVTEDGMAVATGS-WDSFLRIW  339 (340)
Q Consensus       308 ~~~h~~-----------~i~~~~~s~d~~~l~s~s-~D~~i~iW  339 (340)
                      +..|..           .+.+++|||||+.|+..+ .++...||
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~  378 (388)
T 3pe7_A          335 VARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY  378 (388)
T ss_dssp             EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             eccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence            555655           578899999999888666 47777776

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=2.4e-20  Score=164.39  Aligned_cols=263  Identities=11%  Similarity=0.114  Sum_probs=178.2

Q ss_pred             ccCcEEEEEEcCCCCeEEEEeCC----CeEEEEeCCC--CC--eeEEeeCCCCcEEEEEECCCCCEEEEEe-CCCeEEEE
Q psy15421         54 HLAKIYAMHWGSDSRNLVSASQD----GKLIVWDSYT--TN--KVHAIPLRSSWVMTCAYAPSGSFVACGG-LDNICSIY  124 (340)
Q Consensus        54 h~~~v~~~~~s~~~~~l~s~~~d----~~i~iwd~~~--~~--~~~~~~~~~~~i~~v~~~~~~~~l~~~~-~d~~v~i~  124 (340)
                      |......++|+||+++|++++.+    +.|.+|++..  ++  .+.....+......+++  +++++++++ .++.+.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            67778889999999999999886    8999998765  33  22334444555666777  788777766 57899999


Q ss_pred             EccCCCCceEEEE--eecC--------CCcceEEEEEcCCCe-EEEE-eCCCeEEEEECCCCce------E-------EE
Q psy15421        125 SLKTREGNVRVSR--ELPG--------HTGYLSCCRFLDDNQ-IVTS-SGDMSCALWDIETGQQ------C-------AS  179 (340)
Q Consensus       125 ~~~~~~~~~~~~~--~~~~--------~~~~v~~~~~~~~~~-l~~~-~~d~~v~iwd~~~~~~------~-------~~  179 (340)
                      ++...........  ...+        +...+..+.|++++. ++.+ ..++.|.+|++.....      +       ..
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            9975322111111  1111        122346678888764 5444 4588999998875431      1       11


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCee--eeEe---cCCCCCeEEEEEecCCCEEEEEeCC--CcEE
Q psy15421        180 FIGHTGDVMSLSLAPDMRTFVSGA-CDASAKLWDIRDGSC--KQTF---PGHESDINAVTFFPNGWAFATGSDD--ATCR  251 (340)
Q Consensus       180 ~~~~~~~v~~~~~~~~~~~~~sg~-~dg~i~~wd~~~~~~--~~~~---~~h~~~v~~v~~~~~~~~l~s~s~d--~~i~  251 (340)
                      ...+...+..++|+|+++++++++ .++.|.+||+.++..  ...+   ..+......++|+|+|++++++..+  +.|.
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA  285 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence            223455688999999999877666 699999999987754  2222   2334557899999999988666654  8999


Q ss_pred             EEeCc--CCc--EEEEeecCCcccceEEEEEcCCCcEEEEEe-CCCcEEEEe--CCCceeeeee-ccCCcceEEEEEC
Q psy15421        252 LFDIR--ADQ--ELAMYSHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWD--SMKTERAGIL-AGHDNRVSCLGVT  321 (340)
Q Consensus       252 iwd~~--~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~d~~i~iw~--~~~~~~~~~~-~~h~~~i~~~~~s  321 (340)
                      +|++.  +++  .+..+..   ...+..++|+|+|++|+++. .++.|.+|+  ..+++..... ..+...+.|++|.
T Consensus       286 v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          286 IFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            99986  333  2222222   23477899999999888887 678999964  4456554433 2355678899886

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=2.9e-21  Score=168.94  Aligned_cols=259  Identities=10%  Similarity=0.041  Sum_probs=179.8

Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCC-CcEEEEEECCCCCEEE-EEeCCCeEEEEEccCCCCceEEEE
Q psy15421         60 AMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRS-SWVMTCAYAPSGSFVA-CGGLDNICSIYSLKTREGNVRVSR  137 (340)
Q Consensus        60 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~i~~v~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~  137 (340)
                      .+++++++.++++++.+++|++||..+++.+..+..+. ..+..++|+|++++++ ++..++.|.+|++.++.    ...
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~----~~~   79 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK----NTF   79 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE----EEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc----EEE
Confidence            45677888899999999999999999988877776554 1467889999998665 45568899999987643    122


Q ss_pred             eec-CC-----CcceEEEEEcCCC-eEEEEeCC------------CeEEEEECCCCce---EEEEecCCCCeEEEEEcCC
Q psy15421        138 ELP-GH-----TGYLSCCRFLDDN-QIVTSSGD------------MSCALWDIETGQQ---CASFIGHTGDVMSLSLAPD  195 (340)
Q Consensus       138 ~~~-~~-----~~~v~~~~~~~~~-~l~~~~~d------------~~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~  195 (340)
                      .+. .+     ...+..+.|++++ .+++++.+            +.|.+||+.+++.   +..+. +...+.+++|+|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~d  158 (349)
T 1jmx_B           80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADD  158 (349)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTT
T ss_pred             EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCC
Confidence            222 12     1225566787766 56666544            8999999988543   23333 3446889999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeeeeEecCCCC------------------------CeEEEEEecCCCE-----------
Q psy15421        196 MRTFVSGACDASAKLWDIRDGSCKQTFPGHES------------------------DINAVTFFPNGWA-----------  240 (340)
Q Consensus       196 ~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~------------------------~v~~v~~~~~~~~-----------  240 (340)
                      ++ +++++  +.|.+||..+++....++.+..                        ...++++++++..           
T Consensus       159 g~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  235 (349)
T 1jmx_B          159 GS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY  235 (349)
T ss_dssp             SC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred             Cc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence            99 55544  4499999999887776653320                        2345666655421           


Q ss_pred             EEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcC-CCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEE
Q psy15421        241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSR-SGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLG  319 (340)
Q Consensus       241 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~  319 (340)
                      +.....++.+++|+..           .....+..++|+| ++++++++  ++.|.+||..+++.+..+.. ...+.+++
T Consensus       236 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~  301 (349)
T 1jmx_B          236 LSVDLKTGKTHTQEFA-----------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVA  301 (349)
T ss_dssp             EEEETTTCCEEEEEEE-----------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEE
T ss_pred             EEEeccCCcEEecccc-----------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceE
Confidence            1122223344444331           1122477899999 99999988  78999999998887776643 34578999


Q ss_pred             ECCCCCEEEEeeCCCcEEecC
Q psy15421        320 VTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       320 ~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |+|||++|++++.++.|++||
T Consensus       302 ~s~dg~~l~~~~~~~~v~v~d  322 (349)
T 1jmx_B          302 FDKKGDKLYLGGTFNDLAVFN  322 (349)
T ss_dssp             ECSSSSCEEEESBSSEEEEEE
T ss_pred             ECCCCCEEEEecCCCeEEEEe
Confidence            999999888888899999996

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=3.7e-22  Score=180.34  Aligned_cols=202  Identities=10%  Similarity=0.084  Sum_probs=156.5

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCC----------CeeEE-----eeCCCCcEEEEEECCCCCEEE----EE
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTT----------NKVHA-----IPLRSSWVMTCAYAPSGSFVA----CG  115 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~----------~~~~~-----~~~~~~~i~~v~~~~~~~~l~----~~  115 (340)
                      ...+..+++++++.++++++.|+ +++|+....          ..+..     .-.+...|.+++|+|++++|+    +|
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            44688999999999999999988 888864210          01111     112355799999999999999    78


Q ss_pred             eCCCeEEEEEccCC-----C--CceEEEEeecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCCCceEEEEecCCCC
Q psy15421        116 GLDNICSIYSLKTR-----E--GNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIETGQQCASFIGHTGD  186 (340)
Q Consensus       116 ~~d~~v~i~~~~~~-----~--~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~  186 (340)
                      +.|+.|++||+.+.     .  ........+.+|...|.++.|+++  ..|++++.|++|++||++++.......+|...
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~  194 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA  194 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence            89999999998653     1  111223456679999999999875  46888999999999999998777677788999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCC-------CCCeEEEEEecCCCEEEE-EeCCC------cEEE
Q psy15421        187 VMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGH-------ESDINAVTFFPNGWAFAT-GSDDA------TCRL  252 (340)
Q Consensus       187 v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s-~s~d~------~i~i  252 (340)
                      +.+++|+|+++++++|+.||+|++||++ ++....+..|       ...|.+++|++++.++++ ...||      .+++
T Consensus       195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i  273 (434)
T 2oit_A          195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM  273 (434)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence            9999999999999999999999999998 5555555433       337899999998877654 33443      3899


Q ss_pred             EeCcCC
Q psy15421        253 FDIRAD  258 (340)
Q Consensus       253 wd~~~~  258 (340)
                      |+++..
T Consensus       274 ~~l~~~  279 (434)
T 2oit_A          274 ALLPKK  279 (434)
T ss_dssp             EECCCT
T ss_pred             EEeccC
Confidence            998754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=2e-21  Score=169.07  Aligned_cols=242  Identities=13%  Similarity=0.080  Sum_probs=179.5

Q ss_pred             cEEEEEEcCCCCeE-EEEeCCCeEEEEeCCCCCeeEEeeCCC-----CcEEEEEECCCCCEEEEEe------------CC
Q psy15421         57 KIYAMHWGSDSRNL-VSASQDGKLIVWDSYTTNKVHAIPLRS-----SWVMTCAYAPSGSFVACGG------------LD  118 (340)
Q Consensus        57 ~v~~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~i~~v~~~~~~~~l~~~~------------~d  118 (340)
                      .+..++|+|+++.+ ++++.++.|.+||+.+++.+..+....     ..+..++|+|++++++++.            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            47889999999765 556668999999999988876665422     1456789999999998886            57


Q ss_pred             CeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCe-EEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC
Q psy15421        119 NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR  197 (340)
Q Consensus       119 ~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  197 (340)
                      +.+.+|++.++.    ....+.. ...+..+.|++++. ++.+  ++.|.+||+.+++....+..+.. ...+.|+|+++
T Consensus       115 ~~i~v~d~~~~~----~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~  186 (337)
T 1pby_B          115 TRVALYDAETLS----RRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVL  186 (337)
T ss_dssp             CEEEEEETTTTE----EEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCC
T ss_pred             ceEEEEECCCCc----EEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCcc
Confidence            999999986542    2222222 22345566777664 5555  68999999999887766654431 11237889888


Q ss_pred             EEEEEeC-CC-----------------------cEEEEECCCCeee-eEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q psy15421        198 TFVSGAC-DA-----------------------SAKLWDIRDGSCK-QTFPGHESDINAVTFFPNGWAFATGSDDATCRL  252 (340)
Q Consensus       198 ~~~sg~~-dg-----------------------~i~~wd~~~~~~~-~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~i  252 (340)
                      .++..+. ++                       .|.+||+++++.. ..+..+...+.+++|+|++++++++  ++.|++
T Consensus       187 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~  264 (337)
T 1pby_B          187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLES  264 (337)
T ss_dssp             CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEE
T ss_pred             EEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEE
Confidence            6654433 33                       4689999988764 2344566678899999999998888  799999


Q ss_pred             EeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccC
Q psy15421        253 FDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGH  311 (340)
Q Consensus       253 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h  311 (340)
                      ||+.+.+.+..+...   ..+.+++|+|++++|++++.++.|++||..+++.+..+..+
T Consensus       265 ~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          265 FDLEKNASIKRVPLP---HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EETTTTEEEEEEECS---SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             EECCCCcCcceecCC---CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            999988776665433   24678999999999999999999999999988887776544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=1.1e-20  Score=165.52  Aligned_cols=250  Identities=11%  Similarity=0.128  Sum_probs=170.3

Q ss_pred             ecCccCcEEEEEEcCCCCeEEEEeC---CCeEEEEeCCCCC--eeEEeeCCCCcEEEEEECCCCCEEEEEe-CCCeEEEE
Q psy15421         51 LRGHLAKIYAMHWGSDSRNLVSASQ---DGKLIVWDSYTTN--KVHAIPLRSSWVMTCAYAPSGSFVACGG-LDNICSIY  124 (340)
Q Consensus        51 ~~~h~~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~~~~~~l~~~~-~d~~v~i~  124 (340)
                      ...+......++|+||++ |++++.   ++.|++||+.+++  .+..+..+...+..++|+|++++|++++ .++.+.+|
T Consensus        35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~  113 (347)
T 3hfq_A           35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM  113 (347)
T ss_dssp             EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence            344556778899999999 555554   6899999997655  2334344556678899999999988887 67899999


Q ss_pred             EccCCCCceEEEEeecC---------CCcceEEEEEcCCCeEEE-EeCCCeEEEEECC-CCceE--EEEecC-CCCeEEE
Q psy15421        125 SLKTREGNVRVSRELPG---------HTGYLSCCRFLDDNQIVT-SSGDMSCALWDIE-TGQQC--ASFIGH-TGDVMSL  190 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~l~~-~~~d~~v~iwd~~-~~~~~--~~~~~~-~~~v~~~  190 (340)
                      ++... +.......+..         +...+..+.|++++.+++ ...++.|.+|++. .++..  ..+..+ ...+..+
T Consensus       114 ~~~~~-g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~  192 (347)
T 3hfq_A          114 KIAAD-GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHL  192 (347)
T ss_dssp             EECTT-SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEE
T ss_pred             EeCCC-CCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceE
Confidence            99642 22222222221         122466788887765544 4458899999998 45432  222222 3367889


Q ss_pred             EEcCCCCEEEE-EeCCCcEEEEECCC--Cee--eeEecCCC------CCeEEEEEecCCCEE-EEEeCCCcEEEEeCcCC
Q psy15421        191 SLAPDMRTFVS-GACDASAKLWDIRD--GSC--KQTFPGHE------SDINAVTFFPNGWAF-ATGSDDATCRLFDIRAD  258 (340)
Q Consensus       191 ~~~~~~~~~~s-g~~dg~i~~wd~~~--~~~--~~~~~~h~------~~v~~v~~~~~~~~l-~s~s~d~~i~iwd~~~~  258 (340)
                      +|+|+++++++ +..++.|.+|++..  ++.  ...+....      ..+..++|+|+|+++ ++...++.|.+|++...
T Consensus       193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~  272 (347)
T 3hfq_A          193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD  272 (347)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence            99999996554 66789999999874  543  22332222      347889999999976 56677899999998732


Q ss_pred             ---cEEEEeecCCcccceEEEEEcCCCcEEEEEeC-CCcEEEE--eCCCcee
Q psy15421        259 ---QELAMYSHDNIICGITSVAFSRSGRLLLAGYD-DFNCNVW--DSMKTER  304 (340)
Q Consensus       259 ---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-d~~i~iw--~~~~~~~  304 (340)
                         +.+..+..  ....+..++|+|+|++|+++.. ++.+.+|  |..+++.
T Consensus       273 g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          273 GHLTLIQQIST--EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             GCEEEEEEEEC--SSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             CcEEEeEEEec--CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence               22222222  1224678999999998888775 4899999  5455544

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=1.1e-20  Score=165.59  Aligned_cols=236  Identities=8%  Similarity=-0.031  Sum_probs=178.2

Q ss_pred             CcEEEEEECCCCCEEEEEeC-------CCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEE-EEeCCCeEEE
Q psy15421         98 SWVMTCAYAPSGSFVACGGL-------DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIV-TSSGDMSCAL  168 (340)
Q Consensus        98 ~~i~~v~~~~~~~~l~~~~~-------d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~d~~v~i  168 (340)
                      ..+..++|+|+++++++++.       ++.|.+||..+++.    ...++.. .....+.+.+++ .++ +...++.|.+
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~----~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~  115 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV----TQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTA  115 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE----EEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE----EEEEecC-CCcceEEECCCCCEEEEEecCCCEEEE
Confidence            44678999999998888774       56899999876542    2222211 223445666654 344 4555899999


Q ss_pred             EECCCCceEEEEecCCCC---------eEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeeeEecCCCCCeEEEEEecC
Q psy15421        169 WDIETGQQCASFIGHTGD---------VMSLSLAPDMRTFVSGA--CDASAKLWDIRDGSCKQTFPGHESDINAVTFFPN  237 (340)
Q Consensus       169 wd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~sg~--~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~  237 (340)
                      ||+.+++....+..+...         +.+++|+|+++.+++++  .++.|.+||.++++....++.+...+.+++|+|+
T Consensus       116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d  195 (353)
T 3vgz_A          116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSE  195 (353)
T ss_dssp             EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETT
T ss_pred             EeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCC
Confidence            999999887777654332         68899999999777665  5889999999999988888766666889999999


Q ss_pred             CCEEEEEeCCCcEEEEeCcCCcEEEEeecC--CcccceEEEEEcCCCcEEEEEeC-CCcEEEEeCCCceeeeeeccCCcc
Q psy15421        238 GWAFATGSDDATCRLFDIRADQELAMYSHD--NIICGITSVAFSRSGRLLLAGYD-DFNCNVWDSMKTERAGILAGHDNR  314 (340)
Q Consensus       238 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~g~~-d~~i~iw~~~~~~~~~~~~~h~~~  314 (340)
                      ++++++++.++.|.+||..+.+.+..+...  .....+..++|+|++++++++.. ++.|.+||..+++....+..+.  
T Consensus       196 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--  273 (353)
T 3vgz_A          196 GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--  273 (353)
T ss_dssp             TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--
T ss_pred             CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--
Confidence            999999999999999999988776655431  12234778999999997776664 5999999998888777665433  


Q ss_pred             eEEEEECCCCCEEE-EeeCCCcEEecC
Q psy15421        315 VSCLGVTEDGMAVA-TGSWDSFLRIWN  340 (340)
Q Consensus       315 i~~~~~s~d~~~l~-s~s~D~~i~iW~  340 (340)
                      -..++|+|||++++ +...++.|.+||
T Consensus       274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          274 SLAVLFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CceEEECCCCCEEEEEECCCCeEEEEE
Confidence            25699999999554 555789999996

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=3.5e-22  Score=180.53  Aligned_cols=217  Identities=15%  Similarity=0.091  Sum_probs=158.6

Q ss_pred             CeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCC-------CCceEEEE----eecCCCcc
Q psy15421         77 GKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTR-------EGNVRVSR----ELPGHTGY  145 (340)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~-------~~~~~~~~----~~~~~~~~  145 (340)
                      +.+++|+....       .....+..+++++++.++++++.++ +++|+....       +.......    ....+...
T Consensus        23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (434)
T 2oit_A           23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP   94 (434)
T ss_dssp             CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred             eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence            46888864311       1234467788999999999999888 888875421       00000000    11135567


Q ss_pred             eEEEEEcCCC-eEE----EEeCCCeEEEEECCCC--------ce---EEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcE
Q psy15421        146 LSCCRFLDDN-QIV----TSSGDMSCALWDIETG--------QQ---CASFIGHTGDVMSLSLAPD-MRTFVSGACDASA  208 (340)
Q Consensus       146 v~~~~~~~~~-~l~----~~~~d~~v~iwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~~~sg~~dg~i  208 (340)
                      +.++.|++++ .|+    +++.|+.|++||+.++        +.   ...+.+|...|.+++|+|+ +.++++++.||+|
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v  174 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI  174 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence            8999998775 455    5677999999998764        11   3445568999999999998 7899999999999


Q ss_pred             EEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEee-cCC----cccceEEEEEcCCCc
Q psy15421        209 KLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDN----IICGITSVAFSRSGR  283 (340)
Q Consensus       209 ~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~----~~~~i~~~~~s~~~~  283 (340)
                      ++||++++.......+|...|.+++|+|+|.+|++|+.||.|++||.+ .+....+. +..    +...+.++.|++++.
T Consensus       175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~  253 (434)
T 2oit_A          175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV  253 (434)
T ss_dssp             EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTE
T ss_pred             EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCce
Confidence            999999987776677789999999999999999999999999999998 33333332 111    123689999999988


Q ss_pred             EEEEE-eCCC------cEEEEeCCCc
Q psy15421        284 LLLAG-YDDF------NCNVWDSMKT  302 (340)
Q Consensus       284 ~l~~g-~~d~------~i~iw~~~~~  302 (340)
                      ++++. ..+|      .+++|++.+.
T Consensus       254 ~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          254 FAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEEEEccCCCccCCCCceEEEEeccC
Confidence            87653 3443      3889997654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=1.6e-22  Score=194.43  Aligned_cols=273  Identities=11%  Similarity=0.021  Sum_probs=186.4

Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCC---cEEEEEECCCCCEEEEEeC---------CCeEEEEEcc
Q psy15421         60 AMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSS---WVMTCAYAPSGSFVACGGL---------DNICSIYSLK  127 (340)
Q Consensus        60 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~i~~v~~~~~~~~l~~~~~---------d~~v~i~~~~  127 (340)
                      +++|+||+.++ ..+.|++|++||+.+++....+..+..   .+..++|||||++|++++.         ++.+++|++.
T Consensus        20 ~~~~s~dg~~~-~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYL-HQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEE-EECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEE-EEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            67899999654 456799999999999887766654432   3789999999999998876         6899999987


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEE-ecCCCCe-----------------EE
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF-IGHTGDV-----------------MS  189 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~~v-----------------~~  189 (340)
                      +++..  ....+   ...+....|++++..++...++.|.+|++.+++..... .++...+                 .+
T Consensus        99 ~g~~~--~~~~l---~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A           99 NGEFV--RGNEL---PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             TTEEC--CSSCC---CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             CCccc--cceec---CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence            65310  00111   23466788988875444445889999999887654322 1222222                 48


Q ss_pred             EEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCeee--------eEecCCCC
Q psy15421        190 LSLAPDMRTFVSGACDA----------------------------------SAKLWDIRDGSCK--------QTFPGHES  227 (340)
Q Consensus       190 ~~~~~~~~~~~sg~~dg----------------------------------~i~~wd~~~~~~~--------~~~~~h~~  227 (340)
                      ++|+||++.|++++.|.                                  +|++||+.+++..        ..+.+|..
T Consensus       174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  253 (719)
T 1z68_A          174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY  253 (719)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred             EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence            99999999999887652                                  7889999887642        12346788


Q ss_pred             CeEEEEEecCCCEEEEEeCC----CcEEEEe----CcCCcEEEEee--cCCcccceE-----EEEEcCCCcEEEE--EeC
Q psy15421        228 DINAVTFFPNGWAFATGSDD----ATCRLFD----IRADQELAMYS--HDNIICGIT-----SVAFSRSGRLLLA--GYD  290 (340)
Q Consensus       228 ~v~~v~~~~~~~~l~s~s~d----~~i~iwd----~~~~~~~~~~~--~~~~~~~i~-----~~~~s~~~~~l~~--g~~  290 (340)
                      .+..++|+||++.+++....    ..|.+||    ..+++......  .......+.     .+.|+|||+.|+.  +..
T Consensus       254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  333 (719)
T 1z68_A          254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK  333 (719)
T ss_dssp             EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred             eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence            89999999998877775433    2488899    66554332221  011111233     6789999996554  445


Q ss_pred             CC--cEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCC-----CcEEecC
Q psy15421        291 DF--NCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWD-----SFLRIWN  340 (340)
Q Consensus       291 d~--~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D-----~~i~iW~  340 (340)
                      ++  .|.+|+..+++ ...+..+...+..+.++ ++..|+..+.+     +..+||.
T Consensus       334 ~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~  388 (719)
T 1z68_A          334 DGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR  388 (719)
T ss_dssp             TSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred             CCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence            55  56667765554 45566666678887777 88777766654     7888883

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.89  E-value=9.1e-22  Score=184.64  Aligned_cols=230  Identities=11%  Similarity=0.008  Sum_probs=168.5

Q ss_pred             CCcEEEEEECCCCCEEEEEeC-CCeEEEEEccCCCCceEEEEeecCCC-cceEEEEEcCCCeEEEEeC---CCeEEEEEC
Q psy15421         97 SSWVMTCAYAPSGSFVACGGL-DNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIVTSSG---DMSCALWDI  171 (340)
Q Consensus        97 ~~~i~~v~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~~~~~---d~~v~iwd~  171 (340)
                      ..+|.+++|+|||++||+++. |++++||++..+.     ...+..|. ..+....|+++..++++..   +....+|.+
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~-----~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE-----TVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE-----EEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC-----cEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEE
Confidence            356999999999999999887 9999999985432     12233444 5777888887743444443   455667655


Q ss_pred             CC---CceEEEEecCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCC
Q psy15421        172 ET---GQQCASFIGHTGDVMSLSLAPDMRT-FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDD  247 (340)
Q Consensus       172 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~-~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d  247 (340)
                      ..   +... .+... ......+|+|+++. +++.+.++.+.+||+.+++.......+.   .+++|+|||+.+++++.|
T Consensus        96 ~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~  170 (582)
T 3o4h_A           96 NTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFF  170 (582)
T ss_dssp             ETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEE
T ss_pred             eccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEc
Confidence            43   2222 33222 23446688888753 3344445555599999887655544332   789999999999988877


Q ss_pred             ----CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCC--cEEEEeCCCceeeeeeccCCcceEEEE--
Q psy15421        248 ----ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDF--NCNVWDSMKTERAGILAGHDNRVSCLG--  319 (340)
Q Consensus       248 ----~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~--~i~iw~~~~~~~~~~~~~h~~~i~~~~--  319 (340)
                          +.|++||+.+++......+.   ..+..++|||||++|+++..++  .|++||..+++.. .+.+|...+..++  
T Consensus       171 ~~~~~~i~~~d~~~g~~~~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~  246 (582)
T 3o4h_A          171 GGGRVSLFTSNLSSGGLRVFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPT  246 (582)
T ss_dssp             ETTEEEEEEEETTTCCCEEECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCS
T ss_pred             CCCCeEEEEEcCCCCCceEeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhc
Confidence                78999998877655433232   3478999999999999888888  8999999888777 7788888887777  


Q ss_pred             ------ECCCCCEEEEeeCCCcEEecC
Q psy15421        320 ------VTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       320 ------~s~d~~~l~s~s~D~~i~iW~  340 (340)
                            |||||..+++++.|++++||+
T Consensus       247 ~~~~~~~spdg~~~~~~~~~g~~~l~~  273 (582)
T 3o4h_A          247 AITWLGYLPDGRLAVVARREGRSAVFI  273 (582)
T ss_dssp             EEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             cccceeEcCCCcEEEEEEcCCcEEEEE
Confidence                  999999999999999999994

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.88  E-value=1.6e-19  Score=159.59  Aligned_cols=267  Identities=8%  Similarity=0.007  Sum_probs=174.3

Q ss_pred             EEEEeC--CCeEEEEeC--CCCCeeE--Eee-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc-CCCCceEEEEeecC
Q psy15421         70 LVSASQ--DGKLIVWDS--YTTNKVH--AIP-LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK-TREGNVRVSRELPG  141 (340)
Q Consensus        70 l~s~~~--d~~i~iwd~--~~~~~~~--~~~-~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~-~~~~~~~~~~~~~~  141 (340)
                      ++.|+.  ++.|.+|++  .+++...  ... .....+..++|+|++++|++++.+ .+.+|++. ++  ........+.
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g--~~~~~~~~~~   81 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT--EIVHEASHPI   81 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT--EEEEEEEEEC
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCC--CEEEeeEeec
Confidence            344443  246777654  4444321  121 122356788999999999998888 89999986 43  2221112221


Q ss_pred             CCcceEEEEEcCCCe--EE-EEe-------------CCCeEEEEECC-CCceEEEEe----cCCCCeEEEEEcCCCCEEE
Q psy15421        142 HTGYLSCCRFLDDNQ--IV-TSS-------------GDMSCALWDIE-TGQQCASFI----GHTGDVMSLSLAPDMRTFV  200 (340)
Q Consensus       142 ~~~~v~~~~~~~~~~--l~-~~~-------------~d~~v~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~  200 (340)
                      +. ....+.+++++.  ++ ++.             .++.+.+|++. .++....+.    .+...+.+++|+|++++++
T Consensus        82 ~g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~  160 (365)
T 1jof_A           82 GG-HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY  160 (365)
T ss_dssp             CS-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred             CC-CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEE
Confidence            11 122345667765  33 332             68999999997 455443333    2456789999999999887


Q ss_pred             EEe-CCCcEEEEECC-CCeee--eEec--CCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCc--CCcEEE---EeecC-
Q psy15421        201 SGA-CDASAKLWDIR-DGSCK--QTFP--GHESDINAVTFFPNGWAFATGSD-DATCRLFDIR--ADQELA---MYSHD-  267 (340)
Q Consensus       201 sg~-~dg~i~~wd~~-~~~~~--~~~~--~h~~~v~~v~~~~~~~~l~s~s~-d~~i~iwd~~--~~~~~~---~~~~~-  267 (340)
                      ++. .++.|++||+. +++..  ..+.  .|...+..++|+|+|+++++++. ++.|.+|++.  +++...   ..... 
T Consensus       161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~  240 (365)
T 1jof_A          161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP  240 (365)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred             EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCC
Confidence            665 47899999998 67643  2333  24567899999999998887775 7899999875  343321   11111 


Q ss_pred             -C---ccc------ceEEEE-EcCCCcEEEEEeCCC------cEEEEeCC-Cceeee---eeccCCcceEEEEECC---C
Q psy15421        268 -N---IIC------GITSVA-FSRSGRLLLAGYDDF------NCNVWDSM-KTERAG---ILAGHDNRVSCLGVTE---D  323 (340)
Q Consensus       268 -~---~~~------~i~~~~-~s~~~~~l~~g~~d~------~i~iw~~~-~~~~~~---~~~~h~~~i~~~~~s~---d  323 (340)
                       .   ...      .+..++ |+|||++|+++..+.      .|.+|++. +++...   ....+...+..++|+|   |
T Consensus       241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~d  320 (365)
T 1jof_A          241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS  320 (365)
T ss_dssp             TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred             CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcC
Confidence             1   011      377899 999999988765432      89999975 454332   2333555677899999   8


Q ss_pred             CCEEEEeeCC-CcEEecC
Q psy15421        324 GMAVATGSWD-SFLRIWN  340 (340)
Q Consensus       324 ~~~l~s~s~D-~~i~iW~  340 (340)
                      |++|++++.+ ++|+||+
T Consensus       321 g~~l~v~~~~~~~v~v~~  338 (365)
T 1jof_A          321 DEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             TTEEEEECSSSCEEEEEE
T ss_pred             CCEEEEEEcCCCeEEEEE
Confidence            9999988865 8999995

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=5.8e-21  Score=183.54  Aligned_cols=284  Identities=8%  Similarity=0.004  Sum_probs=186.9

Q ss_pred             eEEecCccC---cEEEEEEcCCCCeEEEEeC---------CCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEE
Q psy15421         48 RRTLRGHLA---KIYAMHWGSDSRNLVSASQ---------DGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACG  115 (340)
Q Consensus        48 ~~~~~~h~~---~v~~~~~s~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~  115 (340)
                      ++.+.+|..   .+.+++|||||++|++++.         |+.|++||+.+++.+..... ...+..++|+|||++|+.+
T Consensus        49 ~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~~~~~~SPDG~~la~~  127 (719)
T 1z68_A           49 YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-PRPIQYLCWSPVGSKLAYV  127 (719)
T ss_dssp             EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-CSSBCCEEECSSTTCEEEE
T ss_pred             EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-CcccccceECCCCCEEEEE
Confidence            344455543   3899999999999998876         79999999988765211111 2457789999999999988


Q ss_pred             eCCCeEEEEEccCCCCceEEEEeecCCCcce-----------------EEEEEcCCC-eEEEEeCCC-------------
Q psy15421        116 GLDNICSIYSLKTREGNVRVSRELPGHTGYL-----------------SCCRFLDDN-QIVTSSGDM-------------  164 (340)
Q Consensus       116 ~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~-~l~~~~~d~-------------  164 (340)
                      . ++.|++|++.++... .  .+..++...+                 ..+.|++++ .|+.++.|.             
T Consensus       128 ~-~~~i~~~~~~~g~~~-~--l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~  203 (719)
T 1z68_A          128 Y-QNNIYLKQRPGDPPF-Q--ITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGD  203 (719)
T ss_dssp             E-TTEEEEESSTTSCCE-E--CCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCS
T ss_pred             E-CCeEEEEeCCCCCcE-E--EecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCC
Confidence            5 789999998765321 1  1112222211                 367888876 566665442             


Q ss_pred             ---------------------eEEEEECCCCceE---E-----EEecCCCCeEEEEEcCCCCEEEEEeCC----CcEEEE
Q psy15421        165 ---------------------SCALWDIETGQQC---A-----SFIGHTGDVMSLSLAPDMRTFVSGACD----ASAKLW  211 (340)
Q Consensus       165 ---------------------~v~iwd~~~~~~~---~-----~~~~~~~~v~~~~~~~~~~~~~sg~~d----g~i~~w  211 (340)
                                           .+.+||+.+++..   .     .+.+|...+.+++|+||++++++....    ..|.+|
T Consensus       204 ~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~  283 (719)
T 1z68_A          204 EQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSIC  283 (719)
T ss_dssp             SSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEE
T ss_pred             CCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEE
Confidence                                 7889999887642   1     123577788999999998777764432    348889


Q ss_pred             E----CCCCeeeeEe----cCCCCCeE-----EEEEecCCCEEE--EEeCCC--cEEEEeCcCCcEEEEeecCCcccceE
Q psy15421        212 D----IRDGSCKQTF----PGHESDIN-----AVTFFPNGWAFA--TGSDDA--TCRLFDIRADQELAMYSHDNIICGIT  274 (340)
Q Consensus       212 d----~~~~~~~~~~----~~h~~~v~-----~v~~~~~~~~l~--s~s~d~--~i~iwd~~~~~~~~~~~~~~~~~~i~  274 (340)
                      |    ..++++...+    .+|...+.     .+.|+|||+.++  ++..++  .|.+||+.+++.. .+...  ...+.
T Consensus       284 d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~-~lt~~--~~~v~  360 (719)
T 1z68_A          284 DFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAI-QITSG--KWEAI  360 (719)
T ss_dssp             EECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCE-ECSCS--SSCEE
T ss_pred             cccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceE-ecccC--ceEEE
Confidence            9    8877766555    46776666     789999998554  344555  4667777665532 22221  22366


Q ss_pred             EEEEcCCCcEEEEEeCC-----CcEEEEeCCC--ce-eeeee----ccCCcceEEEEECCCCCEEE-EeeCC--CcEEec
Q psy15421        275 SVAFSRSGRLLLAGYDD-----FNCNVWDSMK--TE-RAGIL----AGHDNRVSCLGVTEDGMAVA-TGSWD--SFLRIW  339 (340)
Q Consensus       275 ~~~~s~~~~~l~~g~~d-----~~i~iw~~~~--~~-~~~~~----~~h~~~i~~~~~s~d~~~l~-s~s~D--~~i~iW  339 (340)
                      .+.++ +++.|+..+.+     +..++|....  +. ....+    .+|...+..+.|+||+++++ +++.+  ..+.+|
T Consensus       361 ~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~  439 (719)
T 1z68_A          361 NIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLH  439 (719)
T ss_dssp             EEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEE
T ss_pred             EEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEE
Confidence            66666 77766665554     7888987543  31 11222    23667888999999998776 34433  345555


Q ss_pred             C
Q psy15421        340 N  340 (340)
Q Consensus       340 ~  340 (340)
                      |
T Consensus       440 d  440 (719)
T 1z68_A          440 D  440 (719)
T ss_dssp             C
T ss_pred             E
Confidence            4

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.86  E-value=4e-20  Score=164.59  Aligned_cols=271  Identities=14%  Similarity=0.006  Sum_probs=177.8

Q ss_pred             EEEEEEcCCCCeEEEEeCC---CeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceE
Q psy15421         58 IYAMHWGSDSRNLVSASQD---GKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVR  134 (340)
Q Consensus        58 v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~  134 (340)
                      +..++|+|||++|+.+..+   ..|.+||+.+++.......+........|+|+|++|+.++.++.+.+|++..+.  ..
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~--~~  115 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE--EQ  115 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC--EE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC--cE
Confidence            6788999999998877543   468888988776543333332222236799999999999999999999987543  22


Q ss_pred             EEEeecCCCcceEE---E----------------EEcCCCe-EEEE-----eCCCeEEEEECCCCceEEEEecCCCCeEE
Q psy15421        135 VSRELPGHTGYLSC---C----------------RFLDDNQ-IVTS-----SGDMSCALWDIETGQQCASFIGHTGDVMS  189 (340)
Q Consensus       135 ~~~~~~~~~~~v~~---~----------------~~~~~~~-l~~~-----~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  189 (340)
                      ....  .+......   +                .+.+++. ++..     ..+..|.+||+.+++.... ..+...+..
T Consensus       116 ~~~~--~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~-~~~~~~~~~  192 (396)
T 3c5m_A          116 VIYT--VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI-HQDTAWLGH  192 (396)
T ss_dssp             EEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE-EEESSCEEE
T ss_pred             EEEe--cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee-ccCCccccc
Confidence            2211  12221111   1                1223322 2211     3566899999988765433 356677899


Q ss_pred             EEEcC-CCCEEEEEeCC------CcEEEEECCCCeeeeEecCC-CCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCc
Q psy15421        190 LSLAP-DMRTFVSGACD------ASAKLWDIRDGSCKQTFPGH-ESDINAVTFFPNGWAFATGSDD-----ATCRLFDIR  256 (340)
Q Consensus       190 ~~~~~-~~~~~~sg~~d------g~i~~wd~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~s~s~d-----~~i~iwd~~  256 (340)
                      +.|+| +++.++..+.+      ..|.+||+..+......... ...+..++|+|+|++|+.++.+     +.|++||+.
T Consensus       193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  272 (396)
T 3c5m_A          193 PIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE  272 (396)
T ss_dssp             EEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT
T ss_pred             ceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC
Confidence            99999 78766655443      46888998765533333311 2357889999999987776554     449999998


Q ss_pred             CCcEEEEeecCCcccceEEEEEcC-CCcEEEEEe----------------CCCcEEEEeCCCceeeeeeccCCc------
Q psy15421        257 ADQELAMYSHDNIICGITSVAFSR-SGRLLLAGY----------------DDFNCNVWDSMKTERAGILAGHDN------  313 (340)
Q Consensus       257 ~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~----------------~d~~i~iw~~~~~~~~~~~~~h~~------  313 (340)
                      +++.........    .. +.|+| +|++++.++                .+..|++||..+++. ..+..|..      
T Consensus       273 ~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~  346 (396)
T 3c5m_A          273 TLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLD  346 (396)
T ss_dssp             TCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBT
T ss_pred             CCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCcccccc
Confidence            765543322221    23 88999 999888765                347899999877654 34545544      


Q ss_pred             -----ceEEEEECCCCCEEEEeeC-CCcEEec
Q psy15421        314 -----RVSCLGVTEDGMAVATGSW-DSFLRIW  339 (340)
Q Consensus       314 -----~i~~~~~s~d~~~l~s~s~-D~~i~iW  339 (340)
                           .+..++|+|||+.|+.++. ++...||
T Consensus       347 ~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~  378 (396)
T 3c5m_A          347 GDRQITHPHPSFTPNDDGVLFTSDFEGVPAIY  378 (396)
T ss_dssp             TBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             ccccCCCCCceEccCCCeEEEEecCCCCceEE
Confidence                 2567899999998887765 5666555

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.86  E-value=8e-19  Score=152.83  Aligned_cols=249  Identities=12%  Similarity=0.130  Sum_probs=181.1

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCC------------------------CeEEEEeCCCCCeeEEee-CCCCcEEEEEECCCC
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQD------------------------GKLIVWDSYTTNKVHAIP-LRSSWVMTCAYAPSG  109 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d------------------------~~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~~~~  109 (340)
                      .+.+.+++++|+|+++++...+                        ++|.+||..+++...... .+-.....++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999999988877                        478899988777665443 233467788888888


Q ss_pred             CEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEE
Q psy15421        110 SFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMS  189 (340)
Q Consensus       110 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  189 (340)
                      +++++...++.|++|+........   ..+..            .+.  .+..                  ..+...+..
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~---~~~~~------------~~~--~g~~------------------~~~~~~P~~  147 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPL---LILGR------------SMQ--PGSD------------------QNHFCQPTD  147 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCS---EEESB------------TTB--CCCS------------------TTCCSSEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEE---EEecc------------cCC--CCCC------------------ccccCCCcE
Confidence            888877778888888753221010   11000            000  0000                  123345789


Q ss_pred             EEEcC-CCCEEEEEe-CCCcEEEEECCCCeeeeEecC----------CCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCc
Q psy15421        190 LSLAP-DMRTFVSGA-CDASAKLWDIRDGSCKQTFPG----------HESDINAVTFFPN-GWAFATGSDDATCRLFDIR  256 (340)
Q Consensus       190 ~~~~~-~~~~~~sg~-~dg~i~~wd~~~~~~~~~~~~----------h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~  256 (340)
                      ++++| ++.++++.+ .++.|++|| .++..+..+..          +......++++|+ +..+++...++.|++||..
T Consensus       148 ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~  226 (329)
T 3fvz_A          148 VAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD  226 (329)
T ss_dssp             EEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence            99999 788888886 799999999 56766666532          2234789999998 8888888889999999998


Q ss_pred             CCcEEEEeecCCcccceEEEEEcCCCcEEEE-------EeCCCcEEEEeCCCceeeeee---ccCCcceEEEEECCCCCE
Q psy15421        257 ADQELAMYSHDNIICGITSVAFSRSGRLLLA-------GYDDFNCNVWDSMKTERAGIL---AGHDNRVSCLGVTEDGMA  326 (340)
Q Consensus       257 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-------g~~d~~i~iw~~~~~~~~~~~---~~h~~~i~~~~~s~d~~~  326 (340)
                      +++.+..+........+..++|+| +..+++       ...+..|++|+..+++.+..+   .++......++++|+|..
T Consensus       227 ~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~l  305 (329)
T 3fvz_A          227 TKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTV  305 (329)
T ss_dssp             TCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEE
T ss_pred             CCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCE
Confidence            777776665444445678899999 444443       334458999999888888776   367788999999999999


Q ss_pred             EEEeeCCCcEEecC
Q psy15421        327 VATGSWDSFLRIWN  340 (340)
Q Consensus       327 l~s~s~D~~i~iW~  340 (340)
                      +++.+.++.|++|+
T Consensus       306 yvad~~~~~I~~~~  319 (329)
T 3fvz_A          306 YIGDAHTNTVWKFT  319 (329)
T ss_dssp             EEEESSSCCEEEEE
T ss_pred             EEEECCCCEEEEEe
Confidence            99999999999985

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.85  E-value=1.4e-19  Score=172.26  Aligned_cols=284  Identities=13%  Similarity=0.047  Sum_probs=194.0

Q ss_pred             EecCccCcEEEEEEcCCCCeEEEE--eCCCeEEEEeCCCCCeeEEeeCCCCcEE---------EEEEC--CCCCE-EEEE
Q psy15421         50 TLRGHLAKIYAMHWGSDSRNLVSA--SQDGKLIVWDSYTTNKVHAIPLRSSWVM---------TCAYA--PSGSF-VACG  115 (340)
Q Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~i~---------~v~~~--~~~~~-l~~~  115 (340)
                      .+.+|...+..++|+++.-++++.  +.++...||....+.....+..+...+.         ...|+  |||++ |+.+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            467899999999999887777777  5688999998654444555555544444         44454  99998 7665


Q ss_pred             eC-CCeEEEEEccCCC-CceEEEEeecC-----CCcceEEEEEcCCC-eEEEEeCC----------CeEEEEECCC----
Q psy15421        116 GL-DNICSIYSLKTRE-GNVRVSRELPG-----HTGYLSCCRFLDDN-QIVTSSGD----------MSCALWDIET----  173 (340)
Q Consensus       116 ~~-d~~v~i~~~~~~~-~~~~~~~~~~~-----~~~~v~~~~~~~~~-~l~~~~~d----------~~v~iwd~~~----  173 (340)
                      +. +..|.++++.... +...   .+..     |...+....|++++ .|+.++.+          ..|.+||+.+    
T Consensus        98 ~~~~~~l~~~~~~~~g~~~~~---~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  174 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAVPR---PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA  174 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCCCE---ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred             ECCCCeEEEEcCCCCCCCCCE---eccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence            44 3444444443001 2221   2223     56667788888776 56666655          5899999987    


Q ss_pred             --CceEEEEe-cCCCCeEEEEEcCCCCEEEEEeCC--------CcEEEEECC-CC---eeeeEecCCCCCeEEEEEecCC
Q psy15421        174 --GQQCASFI-GHTGDVMSLSLAPDMRTFVSGACD--------ASAKLWDIR-DG---SCKQTFPGHESDINAVTFFPNG  238 (340)
Q Consensus       174 --~~~~~~~~-~~~~~v~~~~~~~~~~~~~sg~~d--------g~i~~wd~~-~~---~~~~~~~~h~~~v~~v~~~~~~  238 (340)
                        ++. ..+. .+...+..++|+||++.++.++.+        ..|.+||+. ++   +......+|...+..++|+|||
T Consensus       175 ~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg  253 (662)
T 3azo_A          175 DRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG  253 (662)
T ss_dssp             CGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS
T ss_pred             cCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC
Confidence              443 4555 555678889999999999877754        379999998 56   4444455567889999999999


Q ss_pred             CEEEEEeCCC--cEEEEeCcCCcEEEEeecCCcc------cceEEEEEcCCCcEEEEEeCCCcEEEE--eCCCceeeeee
Q psy15421        239 WAFATGSDDA--TCRLFDIRADQELAMYSHDNII------CGITSVAFSRSGRLLLAGYDDFNCNVW--DSMKTERAGIL  308 (340)
Q Consensus       239 ~~l~s~s~d~--~i~iwd~~~~~~~~~~~~~~~~------~~i~~~~~s~~~~~l~~g~~d~~i~iw--~~~~~~~~~~~  308 (340)
                      +.++++..++  .|.+||..+++...........      ..+..++|+|++++++++.. +.+++|  +..+++ ...+
T Consensus       254 ~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l  331 (662)
T 3azo_A          254 SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDA  331 (662)
T ss_dssp             CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEEC
T ss_pred             eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEe
Confidence            9888888888  5666666555443322221111      01467899999999999999 999999  544444 5677


Q ss_pred             ccCCcceEEE-EECCCCCEEEEeeCCCcEEec
Q psy15421        309 AGHDNRVSCL-GVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       309 ~~h~~~i~~~-~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      ..|...+..+ +++++..++++++.+....||
T Consensus       332 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          332 AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV  363 (662)
T ss_dssp             CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence            7888888877 665555556677777655555

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.85  E-value=5.9e-18  Score=144.14  Aligned_cols=234  Identities=14%  Similarity=0.158  Sum_probs=173.6

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeec------CCCcceEEEEE-cCCCeEEEEeC--CCeEE
Q psy15421         97 SSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELP------GHTGYLSCCRF-LDDNQIVTSSG--DMSCA  167 (340)
Q Consensus        97 ~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~------~~~~~v~~~~~-~~~~~l~~~~~--d~~v~  167 (340)
                      -..+..+++++++.++++...++.|.+|+... .  .  ...+.      ++......+.+ .+++.++.+..  ++.|.
T Consensus        29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~--~--~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-R--F--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             BSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-C--E--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             cCCCceEEECCCCCEEEEECCCCEEEEECCCC-c--E--EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence            34578899999999988888899999998652 1  1  12221      23345667777 45666665553  89999


Q ss_pred             EEECCCCceEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEec--CCCCCeEEEEEecCCCEEEEE
Q psy15421        168 LWDIETGQQCASFIG-HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP--GHESDINAVTFFPNGWAFATG  244 (340)
Q Consensus       168 iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~  244 (340)
                      +|| ..++.+..+.. +...+..++++|+++++++...++.|.+||.. ++....+.  ++...+.+++++|+|..+++.
T Consensus       104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~  181 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD  181 (286)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence            999 45666655533 34568999999999988888889999999964 55555553  344568999999999988888


Q ss_pred             eCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCC-cEEEEeCCCceeeeeeccCCc--ceEEEEEC
Q psy15421        245 SDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDF-NCNVWDSMKTERAGILAGHDN--RVSCLGVT  321 (340)
Q Consensus       245 s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~-~i~iw~~~~~~~~~~~~~h~~--~i~~~~~s  321 (340)
                      ..++.|++||... +.+..+........+..++++|+|+++++...++ .|.+|+. +++.+..+..+..  .+.+++++
T Consensus       182 ~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~  259 (286)
T 1q7f_A          182 NRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM  259 (286)
T ss_dssp             GGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred             CCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEEC
Confidence            8899999999753 4444444332224578999999999999888886 9999994 5666666655543  47799999


Q ss_pred             CCCCEEEEeeCCCcEEecC
Q psy15421        322 EDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       322 ~d~~~l~s~s~D~~i~iW~  340 (340)
                      |+|+++++ +.|++|++|+
T Consensus       260 ~~g~l~vs-~~~~~v~v~~  277 (286)
T 1q7f_A          260 DDGSVVLA-SKDYRLYIYR  277 (286)
T ss_dssp             TTTEEEEE-ETTTEEEEEE
T ss_pred             CCCcEEEE-CCCCeEEEEE
Confidence            99987777 5799999995

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.85  E-value=1.7e-19  Score=173.76  Aligned_cols=268  Identities=10%  Similarity=0.026  Sum_probs=177.9

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCc-----EEEEEECCCCCEEEEEeCC---------CeE
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSW-----VMTCAYAPSGSFVACGGLD---------NIC  121 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----i~~v~~~~~~~~l~~~~~d---------~~v  121 (340)
                      ....++.|+||+.+++++  |++|++||+.+++....+..|...     ...+.|||||++++.++.+         +.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            346689999999988886  999999999999887777766532     2347889999999998876         445


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEE-ecCCCCe-------------
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF-IGHTGDV-------------  187 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~~v-------------  187 (340)
                      .+||+.++.     ...+..|...+....|++++..++...++.|.+|++.+++..+.. .++...+             
T Consensus        95 ~~~d~~~~~-----~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~  169 (740)
T 4a5s_A           95 DIYDLNKRQ-----LITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (740)
T ss_dssp             EEEETTTTE-----ECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             EEEECCCCc-----EEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence            699987653     123455677788889998875444446899999999887644321 1222222             


Q ss_pred             ----EEEEEcCCCCEEEEEeCCC------------------------------------cEEEEECCC---Ce--eeeEe
Q psy15421        188 ----MSLSLAPDMRTFVSGACDA------------------------------------SAKLWDIRD---GS--CKQTF  222 (340)
Q Consensus       188 ----~~~~~~~~~~~~~sg~~dg------------------------------------~i~~wd~~~---~~--~~~~~  222 (340)
                          ..+.|+|||+.|+.++.|.                                    +|++||+.+   +.  ....+
T Consensus       170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l  249 (740)
T 4a5s_A          170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI  249 (740)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred             cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence                3589999999998775332                                    478899988   62  12233


Q ss_pred             c------CCCCCeEEEEEecCCCEEEEEeC----CCcEEEEeCcCCc----EE---EE--eecCCccc--ceEEEEEcCC
Q psy15421        223 P------GHESDINAVTFFPNGWAFATGSD----DATCRLFDIRADQ----EL---AM--YSHDNIIC--GITSVAFSRS  281 (340)
Q Consensus       223 ~------~h~~~v~~v~~~~~~~~l~s~s~----d~~i~iwd~~~~~----~~---~~--~~~~~~~~--~i~~~~~s~~  281 (340)
                      .      +|...+..++|+|||+.++....    +..|++||..+++    ..   ..  ..+.....  .....+|+||
T Consensus       250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD  329 (740)
T 4a5s_A          250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD  329 (740)
T ss_dssp             CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred             cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence            2      37778999999999986665533    3479999988765    11   11  11221111  0236789999


Q ss_pred             CcEEE-EEeC-C--CcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEE-EeeC
Q psy15421        282 GRLLL-AGYD-D--FNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVA-TGSW  332 (340)
Q Consensus       282 ~~~l~-~g~~-d--~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~-s~s~  332 (340)
                      |+.|+ ..+. +  ..|++|+...++... +......|..+.. +|+..|+ +++.
T Consensus       330 G~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~-~d~~~i~f~~~~  383 (740)
T 4a5s_A          330 GNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEA-LTSDYLYYISNE  383 (740)
T ss_dssp             SSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEE-ECSSEEEEEESC
T ss_pred             CCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEE-EeCCEEEEEEec
Confidence            99877 6553 3  467888876655443 4334455555432 3355444 4443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.84  E-value=2e-18  Score=152.45  Aligned_cols=247  Identities=11%  Similarity=0.009  Sum_probs=165.8

Q ss_pred             ccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCC-CCCeeEEee--CCCCcEEEEEECCCCCE--EEEEe------------
Q psy15421         54 HLAKIYAMHWGSDSRNLVSASQDGKLIVWDSY-TTNKVHAIP--LRSSWVMTCAYAPSGSF--VACGG------------  116 (340)
Q Consensus        54 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~--~~~~~i~~v~~~~~~~~--l~~~~------------  116 (340)
                      +...+..++|+|++++|++++.+ .|.+|++. +++......  .+. ....++|+|+|++  ++++.            
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG-HPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC-CCccEEECCCCCEEEEEEecCCcceeccceee
Confidence            44567899999999999999888 99999986 665543222  112 2445789999994  55553            


Q ss_pred             -CCCeEEEEEccCCCCceEEEEee-cCCCcceEEEEEcCCCe-EEEEe-CCCeEEEEECC-CCceE--EEEe--cCCCCe
Q psy15421        117 -LDNICSIYSLKTREGNVRVSREL-PGHTGYLSCCRFLDDNQ-IVTSS-GDMSCALWDIE-TGQQC--ASFI--GHTGDV  187 (340)
Q Consensus       117 -~d~~v~i~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-l~~~~-~d~~v~iwd~~-~~~~~--~~~~--~~~~~v  187 (340)
                       .++.+.+|++............. ..+...+..+.|++++. ++++. .++.|.+|++. +++..  ..+.  .|...+
T Consensus       116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p  195 (365)
T 1jof_A          116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence             68999999996422211111111 12445677888988774 55444 47899999998 67643  2333  235678


Q ss_pred             EEEEEcCCCCEEEEEeC-CCcEEEEECC--CCeee---eE---ecC----CCC------CeEEEE-EecCCCEEEEEeCC
Q psy15421        188 MSLSLAPDMRTFVSGAC-DASAKLWDIR--DGSCK---QT---FPG----HES------DINAVT-FFPNGWAFATGSDD  247 (340)
Q Consensus       188 ~~~~~~~~~~~~~sg~~-dg~i~~wd~~--~~~~~---~~---~~~----h~~------~v~~v~-~~~~~~~l~s~s~d  247 (340)
                      ..++|+|+++++++++. ++.|.+|++.  +++..   ..   ++.    |..      .+..++ |+|||++++++..+
T Consensus       196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~  275 (365)
T 1jof_A          196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence            99999999998887664 7899999765  45542   12   221    222      478999 99999988776543


Q ss_pred             C------cEEEEeCc-CCcEEEEee-cCCcccceEEEEEcC---CCcEEEEEeC-CCcEEEEeCCCc
Q psy15421        248 A------TCRLFDIR-ADQELAMYS-HDNIICGITSVAFSR---SGRLLLAGYD-DFNCNVWDSMKT  302 (340)
Q Consensus       248 ~------~i~iwd~~-~~~~~~~~~-~~~~~~~i~~~~~s~---~~~~l~~g~~-d~~i~iw~~~~~  302 (340)
                      .      .|.+|++. +++...... .......+..++|+|   +|++|+++.. ++.|++|+....
T Consensus       276 ~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            2      89999986 444332111 111122356789999   8999999876 489999987544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.84  E-value=4.8e-17  Score=138.50  Aligned_cols=241  Identities=13%  Similarity=0.163  Sum_probs=174.0

Q ss_pred             cCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeC------CCCcEEEEEE-CCCCCEEEEEeC-CCeEEE
Q psy15421         52 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPL------RSSWVMTCAY-APSGSFVACGGL-DNICSI  123 (340)
Q Consensus        52 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~------~~~~i~~v~~-~~~~~~l~~~~~-d~~v~i  123 (340)
                      .+|.....++++++++.++++...++.|++||.. ++.+..+..      +...+..+++ .+++.++++... ++.|.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            4567789999999999998888899999999976 555555432      2346788999 577777776643 788999


Q ss_pred             EEccCCCCceEEEEeec-CCCcceEEEEEcCCCeE-EEEeCCCeEEEEECCCCceEEEEe--cCCCCeEEEEEcCCCCEE
Q psy15421        124 YSLKTREGNVRVSRELP-GHTGYLSCCRFLDDNQI-VTSSGDMSCALWDIETGQQCASFI--GHTGDVMSLSLAPDMRTF  199 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~  199 (340)
                      |+. .+  ..  ...+. .+......+.+.+++.+ ++...++.|.+||.. ++....+.  .+...+..++++|+++++
T Consensus       105 ~d~-~g--~~--~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~  178 (286)
T 1q7f_A          105 YNQ-YG--QF--VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIF  178 (286)
T ss_dssp             ECT-TS--CE--EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred             ECC-CC--cE--EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEE
Confidence            983 22  21  22222 23345667777766654 455568899999975 45555553  344568999999999988


Q ss_pred             EEEeCCCcEEEEECCCCeeeeEecCC--CCCeEEEEEecCCCEEEEEeCCC-cEEEEeCcCCcEEEEeecCCcccceEEE
Q psy15421        200 VSGACDASAKLWDIRDGSCKQTFPGH--ESDINAVTFFPNGWAFATGSDDA-TCRLFDIRADQELAMYSHDNIICGITSV  276 (340)
Q Consensus       200 ~sg~~dg~i~~wd~~~~~~~~~~~~h--~~~v~~v~~~~~~~~l~s~s~d~-~i~iwd~~~~~~~~~~~~~~~~~~i~~~  276 (340)
                      ++...++.|++||.. ++.+..+..+  ...+..++++|+|..+++...++ .|.+||.. ++.+..+........+..+
T Consensus       179 v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i  256 (286)
T 1q7f_A          179 ISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDV  256 (286)
T ss_dssp             EEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEE
T ss_pred             EEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeE
Confidence            888889999999974 5555566433  35788999999999988888886 99999965 4444444332222236789


Q ss_pred             EEcCCCcEEEEEeCCCcEEEEeCCCc
Q psy15421        277 AFSRSGRLLLAGYDDFNCNVWDSMKT  302 (340)
Q Consensus       277 ~~s~~~~~l~~g~~d~~i~iw~~~~~  302 (340)
                      +++|+|+++++ +.|+.|++|+....
T Consensus       257 ~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          257 ALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EECCCCcEEEE-CCCCeEEEEEcccc
Confidence            99999987777 57899999986543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.84  E-value=4.6e-18  Score=148.51  Aligned_cols=254  Identities=15%  Similarity=0.066  Sum_probs=168.3

Q ss_pred             eEEecCcc-CcEEEEEEcCCCCeE-EEEeCCCeEEEEeCCCCCeeEEeeCCC------CcEEEEEECCCCCEEEEEeCC-
Q psy15421         48 RRTLRGHL-AKIYAMHWGSDSRNL-VSASQDGKLIVWDSYTTNKVHAIPLRS------SWVMTCAYAPSGSFVACGGLD-  118 (340)
Q Consensus        48 ~~~~~~h~-~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~i~~v~~~~~~~~l~~~~~d-  118 (340)
                      .+++..+. ..+..++|+|+++.+ ++...++.|.+||+.+++.+..+....      ..+..++|+|+|+++++++.+ 
T Consensus        34 ~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  113 (349)
T 1jmx_B           34 YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPT  113 (349)
T ss_dssp             EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEE
T ss_pred             EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccc
Confidence            34454332 257889999999865 455678999999999888776666432      226678999999999998865 


Q ss_pred             -----------CeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCC--
Q psy15421        119 -----------NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTG--  185 (340)
Q Consensus       119 -----------~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--  185 (340)
                                 +.+.+||+.++... ....... +...+.++.|++++.++.++  +.|.+||+.+++....+..+..  
T Consensus       114 ~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~-~~~~~~~~~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~  189 (349)
T 1jmx_B          114 QRLNDHYVVKPPRLEVFSTADGLEA-KPVRTFP-MPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNR  189 (349)
T ss_dssp             EECSSCEEECCCEEEEEEGGGGGGB-CCSEEEE-CCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCC
T ss_pred             cccccccccCCCeEEEEECCCcccc-ceeeecc-CCCcccceeECCCCcEEEcc--CcEEEEeCCCCceeccccccccCC
Confidence                       89999998763211 1112222 22346667788777666554  3499999999887766543320  


Q ss_pred             ----------------------CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeee-eEecCCCCCeEEEEEec-CCCE
Q psy15421        186 ----------------------DVMSLSLAPDMRTFVSGA-CDASAKLWDIRDGSCK-QTFPGHESDINAVTFFP-NGWA  240 (340)
Q Consensus       186 ----------------------~v~~~~~~~~~~~~~sg~-~dg~i~~wd~~~~~~~-~~~~~h~~~v~~v~~~~-~~~~  240 (340)
                                            ....+++++++....... ....+..+|..+++.. ..+..+...+.+++|+| ++++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~  269 (349)
T 1jmx_B          190 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ  269 (349)
T ss_dssp             TTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE
T ss_pred             ccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCE
Confidence                                  234456665432110000 0011122444444321 12223556788999999 9999


Q ss_pred             EEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeecc
Q psy15421        241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAG  310 (340)
Q Consensus       241 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~  310 (340)
                      ++++  ++.|.+||+.+.+.+..+....   .+..++|+|++++|++++.++.|++||..+++.+..+..
T Consensus       270 l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          270 IYGV--LNRLAKYDLKQRKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             EEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEE--cCeEEEEECccCeEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence            8888  8899999999887766654332   367899999999988888899999999988887776643

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.83  E-value=7.8e-18  Score=148.43  Aligned_cols=264  Identities=12%  Similarity=0.097  Sum_probs=184.2

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEe----------CCCeEEEEeCCCCCeeEEeeCC------CCcEEEEEECCCCCE
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSAS----------QDGKLIVWDSYTTNKVHAIPLR------SSWVMTCAYAPSGSF  111 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~------~~~i~~v~~~~~~~~  111 (340)
                      ..++..+..+  .++|+||++++.++.          .+++|.+||..+.+.+..+...      ......++++|+|++
T Consensus        44 ~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~  121 (361)
T 2oiz_A           44 LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF  121 (361)
T ss_dssp             EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE
T ss_pred             EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE
Confidence            3456666555  899999999998886          3678999999988888777643      233557889999999


Q ss_pred             EEEEeC--CCeEEEEEccCCCCceEEEEe-ecCCCcceEEEEEcCC--CeEEEEeCCCeEEEEECCC-CceEEEE-----
Q psy15421        112 VACGGL--DNICSIYSLKTREGNVRVSRE-LPGHTGYLSCCRFLDD--NQIVTSSGDMSCALWDIET-GQQCASF-----  180 (340)
Q Consensus       112 l~~~~~--d~~v~i~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~--~~l~~~~~d~~v~iwd~~~-~~~~~~~-----  180 (340)
                      |+++..  ++.|.+||+.+++    .... ++. .... .+.+.+.  ..+++.+.|+.+.+|++.. ++.....     
T Consensus       122 l~v~n~~~~~~v~v~d~~~~~----~~~~~i~~-~~~~-~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~  195 (361)
T 2oiz_A          122 IVLQNASPATSIGIVDVAKGD----YVEDVTAA-AGCW-SVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQM  195 (361)
T ss_dssp             EEEEEESSSEEEEEEETTTTE----EEEEEGGG-TTEE-EEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCC
T ss_pred             EEEECCCCCCeEEEEECCCCc----EEEEEecC-CCcc-eeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccce
Confidence            998874  5889999997652    3333 332 1111 1223332  3678888999999999865 4443211     


Q ss_pred             -ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--eeEecCCC----------CCeEEEEEecCCCEEEEEeC-
Q psy15421        181 -IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC--KQTFPGHE----------SDINAVTFFPNGWAFATGSD-  246 (340)
Q Consensus       181 -~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~--~~~~~~h~----------~~v~~v~~~~~~~~l~s~s~-  246 (340)
                       ..... ...+.+.|++..++..+.++.|.++|+.....  ...+.-..          .....++|+|++..+..+.. 
T Consensus       196 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~  274 (361)
T 2oiz_A          196 FSVKDD-PIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHP  274 (361)
T ss_dssp             SCTTTS-CBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEES
T ss_pred             EcCCCC-ceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEcc
Confidence             11111 12233456677777777899999999875432  12211000          11112789999777665532 


Q ss_pred             ----------CCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc--eeeeeeccCCcc
Q psy15421        247 ----------DATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT--ERAGILAGHDNR  314 (340)
Q Consensus       247 ----------d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~--~~~~~~~~h~~~  314 (340)
                                .+.|.+||..+.+.+..+....    +..++|+|+|++|+++.. ++|.+||..++  +.+..+..+...
T Consensus       275 ~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~  349 (361)
T 2oiz_A          275 DGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEA  349 (361)
T ss_dssp             SCCTTCTTCCCSEEEEEETTTTEEEEEEECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSS
T ss_pred             CCCcccccCCCceEEEEECCCCcEEEEEecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCC
Confidence                      3589999999988887765433    678999999999998887 99999999999  888887777778


Q ss_pred             eEEEEECCCCC
Q psy15421        315 VSCLGVTEDGM  325 (340)
Q Consensus       315 i~~~~~s~d~~  325 (340)
                      ...++++|+|.
T Consensus       350 P~~~~~~p~G~  360 (361)
T 2oiz_A          350 SLQVQFHPVGG  360 (361)
T ss_dssp             EEEEEECCCSC
T ss_pred             cEEEEecCCCC
Confidence            88999999986

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.82  E-value=1.2e-17  Score=147.29  Aligned_cols=255  Identities=14%  Similarity=0.158  Sum_probs=176.6

Q ss_pred             CCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeC----------CCeEEEEEccCCCCceEEEEeecC---
Q psy15421         75 QDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGL----------DNICSIYSLKTREGNVRVSRELPG---  141 (340)
Q Consensus        75 ~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~----------d~~v~i~~~~~~~~~~~~~~~~~~---  141 (340)
                      .|+.|.+||..+++.+..++.+..+  .++|+|++++++++..          ++.|.+||..+.+    ....++.   
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~----~~~~i~~~~~  102 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT----FEKEISLPPK  102 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC----EEEEEEECTT
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc----EEEEEEcCcc
Confidence            4789999999999988888776554  8999999999998863          6789999986543    2222221   


Q ss_pred             ---CCcceEEEEEcCCCe-EEEEe-C-CCeEEEEECCCCceEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECC
Q psy15421        142 ---HTGYLSCCRFLDDNQ-IVTSS-G-DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDM-RTFVSGACDASAKLWDIR  214 (340)
Q Consensus       142 ---~~~~v~~~~~~~~~~-l~~~~-~-d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~sg~~dg~i~~wd~~  214 (340)
                         +......+.++++++ ++.+. . +++|.+||+.+++.+..+..+.+ ...+.+.|++ ..+++.+.||.+.+|++.
T Consensus       103 ~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~  181 (361)
T 2oiz_A          103 RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-CWSVIPQPNRPRSFMTICGDGGLLTINLG  181 (361)
T ss_dssp             BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-EEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred             ccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC-cceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence               112334466777664 55444 3 68999999999987766222322 3335667765 678889999999999986


Q ss_pred             C-Ceeee------EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEE--EEeecCC--------cccceEEEE
Q psy15421        215 D-GSCKQ------TFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL--AMYSHDN--------IICGITSVA  277 (340)
Q Consensus       215 ~-~~~~~------~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~~~--------~~~~i~~~~  277 (340)
                      . ++...      .+..+..++ .+.+.|++..++..+.++.+.++|+......  ..+....        ...+...++
T Consensus       182 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a  260 (361)
T 2oiz_A          182 EDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVG  260 (361)
T ss_dssp             TTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEE
T ss_pred             CCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEE
Confidence            5 44431      222222232 3344677777777888999999998754321  1111100        011122378


Q ss_pred             EcCCCcEEEEEeC-----------CCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        278 FSRSGRLLLAGYD-----------DFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       278 ~s~~~~~l~~g~~-----------d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |+|+++.+.++..           ...|.+||..+.+.+..+..+.  +.+++|+|||++|+++.. ++|.|||
T Consensus       261 ~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D  331 (361)
T 2oiz_A          261 LHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYD  331 (361)
T ss_dssp             EETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEE
T ss_pred             EecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEE
Confidence            9999888777643           3479999999999999888776  999999999999998886 9999996

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.82  E-value=1.3e-17  Score=145.18  Aligned_cols=268  Identities=10%  Similarity=0.053  Sum_probs=186.7

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEE
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV  135 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  135 (340)
                      ..|.+++|++++..+++.+.++.++.|   .++....+..+...+..++|+|++++++++..++.|.+|+..++.  .. 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~--~~-   79 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE--IK-   79 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC--EE-
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc--EE-
Confidence            356788899998888888889999999   344556666666778899999999988888889999999876543  11 


Q ss_pred             EEeecCCCcceEEEEEcCCCeEEEEe-CC----CeEEEEECCCCceEEEEe--cCCCCeEEEEEcCCCCEEEEEeC----
Q psy15421        136 SRELPGHTGYLSCCRFLDDNQIVTSS-GD----MSCALWDIETGQQCASFI--GHTGDVMSLSLAPDMRTFVSGAC----  204 (340)
Q Consensus       136 ~~~~~~~~~~v~~~~~~~~~~l~~~~-~d----~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~sg~~----  204 (340)
                       .....+...+..+.+.+++.++.+. .+    +.|.+||..+++....+.  .+...+..++++|+++++++...    
T Consensus        80 -~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~  158 (333)
T 2dg1_A           80 -RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYST  158 (333)
T ss_dssp             -EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTT
T ss_pred             -EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccccc
Confidence             1122345667888887776655444 44    589999998776543332  23456899999999988877654    


Q ss_pred             --CCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEeCcC-CcEEEEe------ecCCcccceE
Q psy15421        205 --DASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF-ATGSDDATCRLFDIRA-DQELAMY------SHDNIICGIT  274 (340)
Q Consensus       205 --dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~s~d~~i~iwd~~~-~~~~~~~------~~~~~~~~i~  274 (340)
                        .+.|..+|...++... +..+...++.++|+|+++.+ ++.+.++.|.+||... +..+..+      ..... ..+.
T Consensus       159 ~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~  236 (333)
T 2dg1_A          159 NPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPD  236 (333)
T ss_dssp             BCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEE
T ss_pred             CCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCC
Confidence              3556666665544332 22233457899999999855 5555688999999863 2222111      11111 2467


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCc------ceEEEEECCCCCEEEEeeCC
Q psy15421        275 SVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDN------RVSCLGVTEDGMAVATGSWD  333 (340)
Q Consensus       275 ~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~------~i~~~~~s~d~~~l~s~s~D  333 (340)
                      .++++++|+++++...++.|.+|+. +++.+..+..+..      .+.+++|+||+..|+.++.+
T Consensus       237 ~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          237 SCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             ceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            8999999999888888899999996 5555555543332      68999999998776655544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.81  E-value=2.8e-15  Score=127.90  Aligned_cols=278  Identities=8%  Similarity=-0.002  Sum_probs=196.1

Q ss_pred             EecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeE-EeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccC
Q psy15421         50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVH-AIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKT  128 (340)
Q Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~  128 (340)
                      .+..+...+.+++++++++..++...++.|..||.. ++... ........+..+++++++.++++...++.+..|+.. 
T Consensus         9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A            9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-   86 (299)
T ss_dssp             ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence            455667789999999999988877778999999987 54332 223345678899999999988887778888888864 


Q ss_pred             CCCceEEEEeecCCCcceEEEEEcCCCeEE-EEeCCCeEEEEECCCCceEEE-EecCCCCeEEEEEcCCCCEEEEEeCCC
Q psy15421        129 REGNVRVSRELPGHTGYLSCCRFLDDNQIV-TSSGDMSCALWDIETGQQCAS-FIGHTGDVMSLSLAPDMRTFVSGACDA  206 (340)
Q Consensus       129 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~sg~~dg  206 (340)
                        +... ....+.....+..+.+.+++.+. +...++.|..||. +++.... .......+..+++.++++++++...++
T Consensus        87 --g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~  162 (299)
T 2z2n_A           87 --GIIK-EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNN  162 (299)
T ss_dssp             --SCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred             --CcEE-EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCC
Confidence              2221 12233334456677776666554 4456789999998 5543322 222445689999999998888777789


Q ss_pred             cEEEEECCCCeeeeE-ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEE
Q psy15421        207 SAKLWDIRDGSCKQT-FPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLL  285 (340)
Q Consensus       207 ~i~~wd~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
                      .|..||. +++.... +..+...+.+++++++|..+++...++.|..||. +++.. .+........+..++++++|+++
T Consensus       163 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~  239 (299)
T 2z2n_A          163 AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHAITAGAGIDLW  239 (299)
T ss_dssp             EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECSTTCEE
T ss_pred             EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEECCCCCCCceeEEECCCCCEE
Confidence            9999998 6654432 3344556889999999998887777889999998 54432 23222223458899999999977


Q ss_pred             EEEeCCCcEEEEeCCCceeeee-eccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        286 LAGYDDFNCNVWDSMKTERAGI-LAGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       286 ~~g~~d~~i~iw~~~~~~~~~~-~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      ++...++.|..|+. ++..... +..+...+.++++ ++|.++++.+.++.+++
T Consensus       240 v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~  291 (299)
T 2z2n_A          240 FTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL  291 (299)
T ss_dssp             EEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred             EeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence            77767889999997 4443222 3355678999999 99988887665555443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.79  E-value=3.3e-16  Score=136.91  Aligned_cols=254  Identities=11%  Similarity=0.106  Sum_probs=167.6

Q ss_pred             CcEEEEEEcCCCCeEEEEe---------CCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC---Ce--E
Q psy15421         56 AKIYAMHWGSDSRNLVSAS---------QDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD---NI--C  121 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d---~~--v  121 (340)
                      ..+...++  ||+.++...         .++.|.+||+.+++... +    ..+..++|+|||++|+..+.+   +.  +
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            34566667  788776542         36789999998876433 3    457788999999999887654   34  5


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeC---------------------------CCeEEEEECCC
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSG---------------------------DMSCALWDIET  173 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~---------------------------d~~v~iwd~~~  173 (340)
                      .+|++..+  .......   +.. +..+.|++++ .|+.++.                           ...|.+||+.+
T Consensus        88 ~~~~~~~g--~~~~l~~---~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~  161 (347)
T 2gop_A           88 WVADLETL--SSKKILE---AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES  161 (347)
T ss_dssp             EEEETTTT--EEEEEEE---ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred             EEEECCCC--ceEEEEc---CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence            55555432  2222221   223 7778888765 4665542                           25688999988


Q ss_pred             CceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeC
Q psy15421        174 GQQCASFIGHTGDVMSLSLAPDMRTFVSGACDA-------SAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSD  246 (340)
Q Consensus       174 ~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg-------~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~  246 (340)
                      ++....+.. . .+..++|+|++ +++++..++       ...+|.+.+++.. .+..+ ..+..+  +|+|++++.++.
T Consensus       162 ~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~~-~~~~~~--spdg~~l~~~~~  234 (347)
T 2gop_A          162 EEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFEK-VSFYAV--DSDGERILLYGK  234 (347)
T ss_dssp             TEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEEEE-ESEEEE--EECSSCEEEEEC
T ss_pred             CeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-EeccC-cceeeE--CCCCCEEEEEEc
Confidence            876445544 3 78899999999 777776542       3455544455543 33333 455554  999998888775


Q ss_pred             C--------CcEEEEeCcCCcEEEEeecCCcccceEE-EEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEE
Q psy15421        247 D--------ATCRLFDIRADQELAMYSHDNIICGITS-VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSC  317 (340)
Q Consensus       247 d--------~~i~iwd~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~  317 (340)
                      +        ..|.+||  +++......  .....+.. +.|+ ++ ++++++.++.+++| ..+++. ..+..+...|.+
T Consensus       235 ~~~~~~~~~~~l~~~d--~~~~~~l~~--~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~  306 (347)
T 2gop_A          235 PEKKYMSEHNKLYIYD--GKEVMGILD--EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMG  306 (347)
T ss_dssp             CSSSCCCSSCEEEEEC--SSCEEESST--TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEE
T ss_pred             cccCCccccceEEEEC--CCceEeccc--cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEe
Confidence            4        3688888  343322221  22234665 8999 88 99999999999999 765544 334456788999


Q ss_pred             EEECCCCCEEEEeeCCCcE-Eec
Q psy15421        318 LGVTEDGMAVATGSWDSFL-RIW  339 (340)
Q Consensus       318 ~~~s~d~~~l~s~s~D~~i-~iW  339 (340)
                      ++|+|  ..+++++.++.. +||
T Consensus       307 ~~~s~--~~~~~~~~~~~~~~l~  327 (347)
T 2gop_A          307 FDVDE--IVVYLKETATRLRELF  327 (347)
T ss_dssp             EEESS--SEEEEEECSSSCCEEE
T ss_pred             eeeeC--cEEEEEcCCCChHHhe
Confidence            99999  577777777654 665

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.78  E-value=1.2e-15  Score=130.62  Aligned_cols=241  Identities=12%  Similarity=0.072  Sum_probs=168.5

Q ss_pred             EecCccCcEEEEEEcCCCC-eEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccC
Q psy15421         50 TLRGHLAKIYAMHWGSDSR-NLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKT  128 (340)
Q Consensus        50 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~  128 (340)
                      .+..+.....+++|+|+++ +++++..++.|..||..++  ...+..+...+..++++|+|+++++...++.|.+|+..+
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~   99 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG   99 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence            4556667788999999998 7888888999999998876  555666677789999999999888777778999999765


Q ss_pred             CCCceEEEE-eecCC-CcceEEEEEcCCCeEEEE-----e-------------CCCeEEEEECCCCceEEEEecCCCCeE
Q psy15421        129 REGNVRVSR-ELPGH-TGYLSCCRFLDDNQIVTS-----S-------------GDMSCALWDIETGQQCASFIGHTGDVM  188 (340)
Q Consensus       129 ~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~l~~~-----~-------------~d~~v~iwd~~~~~~~~~~~~~~~~v~  188 (340)
                      +.  ..... ..... ...+..+.+.+++.+..+     +             ..+.|..++.. ++ ...+..+...+.
T Consensus       100 g~--~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~  175 (296)
T 3e5z_A          100 GE--WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPN  175 (296)
T ss_dssp             CC--EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEE
T ss_pred             Cc--EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCc
Confidence            43  21111 11111 123345667666655442     2             12455555554 33 445556666789


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECC-CCee---eeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEe
Q psy15421        189 SLSLAPDMRTFVSGACDASAKLWDIR-DGSC---KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMY  264 (340)
Q Consensus       189 ~~~~~~~~~~~~sg~~dg~i~~wd~~-~~~~---~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  264 (340)
                      .++|+|+++.+++.+.++.|.+||+. ++..   ...+..+...+.+++++++|..+++.  ++.|.+||.. ++.+..+
T Consensus       176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~  252 (296)
T 3e5z_A          176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRV  252 (296)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEE
T ss_pred             cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEE
Confidence            99999999988878889999999986 4544   23343345567789999999877766  7899999986 5555544


Q ss_pred             ecCCcccceEEEEE-cCCCcEEEEEeCCCcEEEEeCCCce
Q psy15421        265 SHDNIICGITSVAF-SRSGRLLLAGYDDFNCNVWDSMKTE  303 (340)
Q Consensus       265 ~~~~~~~~i~~~~~-s~~~~~l~~g~~d~~i~iw~~~~~~  303 (340)
                      ....  . +++++| +|+++.|.+++.++ +.-++..+.+
T Consensus       253 ~~~~--~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~  288 (296)
T 3e5z_A          253 LTPQ--T-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG  288 (296)
T ss_dssp             ECSS--C-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred             ECCC--C-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence            4322  2 778899 68999999988875 4444544443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.78  E-value=9.7e-17  Score=142.45  Aligned_cols=253  Identities=14%  Similarity=0.046  Sum_probs=164.7

Q ss_pred             EeCCCCCeeEEeeCCCCcEEE-----EEECCCCCEEEEEeC-CCe--EEEEEccCCCCceEEEEeecCCCcceEEEEEcC
Q psy15421         82 WDSYTTNKVHAIPLRSSWVMT-----CAYAPSGSFVACGGL-DNI--CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD  153 (340)
Q Consensus        82 wd~~~~~~~~~~~~~~~~i~~-----v~~~~~~~~l~~~~~-d~~--v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  153 (340)
                      +|..++..+..+..+......     .+|+|||++|+.++. ++.  +.+|++.+++  .  .....++...+....|++
T Consensus        15 ~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~--~--~~lt~~~~~~~~~~~~sp   90 (388)
T 3pe7_A           15 QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV--A--TQLTEGRGDNTFGGFLSP   90 (388)
T ss_dssp             ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE--E--EECCCSSCBCSSSCEECT
T ss_pred             ecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc--e--EEeeeCCCCCccceEEcC
Confidence            466677777666666554544     789999999998887 664  6666665432  2  222334444443455777


Q ss_pred             CC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEE--EEcCCCCEEEEE----------------------eCCCcE
Q psy15421        154 DN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSL--SLAPDMRTFVSG----------------------ACDASA  208 (340)
Q Consensus       154 ~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~sg----------------------~~dg~i  208 (340)
                      ++ .|+.++.++.+.+||+.+++....+..+...+...  .++|+++.++..                      ..+..|
T Consensus        91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (388)
T 3pe7_A           91 DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL  170 (388)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence            65 67788888999999999988766665555544333  348999888742                      245789


Q ss_pred             EEEECCCCeeeeEecCCCCCeEEEEEec-CCCEEEEEeCC------CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCC
Q psy15421        209 KLWDIRDGSCKQTFPGHESDINAVTFFP-NGWAFATGSDD------ATCRLFDIRADQELAMYSHDNIICGITSVAFSRS  281 (340)
Q Consensus       209 ~~wd~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  281 (340)
                      .+||+.+++... +..+...+..+.|+| +|+.++..+.+      ..|.++|............ .....+...+|+||
T Consensus       171 ~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~~spd  248 (388)
T 3pe7_A          171 MRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH-AEGESCTHEFWVPD  248 (388)
T ss_dssp             EEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC-CTTEEEEEEEECTT
T ss_pred             EEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC-CCCcccccceECCC
Confidence            999999887544 334566789999999 99988877763      3788888765543322221 11123678899999


Q ss_pred             CcEEEEEeC-CC----cEEEEeCCCceee--eeeccCCcc---eEEEEECCCCCEEEEe---------eCCCcEEecC
Q psy15421        282 GRLLLAGYD-DF----NCNVWDSMKTERA--GILAGHDNR---VSCLGVTEDGMAVATG---------SWDSFLRIWN  340 (340)
Q Consensus       282 ~~~l~~g~~-d~----~i~iw~~~~~~~~--~~~~~h~~~---i~~~~~s~d~~~l~s~---------s~D~~i~iW~  340 (340)
                      |+.|+..+. ++    .|++||..+++..  ..+.++...   ...++|+|||+.|+..         ..+..|++||
T Consensus       249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d  326 (388)
T 3pe7_A          249 GSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN  326 (388)
T ss_dssp             SSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred             CCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence            997765443 22    3999998877642  233331111   1223799999987743         4466888885

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.77  E-value=1e-16  Score=152.53  Aligned_cols=255  Identities=15%  Similarity=0.070  Sum_probs=162.7

Q ss_pred             EEecCccCcEE---------EEEEc--CCCCe-EEEEeC-CCeEEEEeCC--C-CCeeEEeeC-----CCCcEEEEEECC
Q psy15421         49 RTLRGHLAKIY---------AMHWG--SDSRN-LVSASQ-DGKLIVWDSY--T-TNKVHAIPL-----RSSWVMTCAYAP  107 (340)
Q Consensus        49 ~~~~~h~~~v~---------~~~~s--~~~~~-l~s~~~-d~~i~iwd~~--~-~~~~~~~~~-----~~~~i~~v~~~~  107 (340)
                      +.+..|...+.         ...|+  ||++. |+.++. +..|.+|++.  . ++ ...+..     |...+..++|+|
T Consensus        61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~sp  139 (662)
T 3azo_A           61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLP  139 (662)
T ss_dssp             EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEET
T ss_pred             ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECC
Confidence            45666766665         56565  99998 765544 5667777765  2 33 333433     556788999999


Q ss_pred             CCCEEEEEeCC----------CeEEEEEccCCC----CceEEEEeec-CCCcceEEEEEcCCC-eEEEEeCC--------
Q psy15421        108 SGSFVACGGLD----------NICSIYSLKTRE----GNVRVSRELP-GHTGYLSCCRFLDDN-QIVTSSGD--------  163 (340)
Q Consensus       108 ~~~~l~~~~~d----------~~v~i~~~~~~~----~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~d--------  163 (340)
                      ||+.|++++.+          ..|.+|++....    +..   ..+. .+...+....|++++ .|+.++.+        
T Consensus       140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~  216 (662)
T 3azo_A          140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV---RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEG  216 (662)
T ss_dssp             TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS---EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTC
T ss_pred             CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce---eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCC
Confidence            99999998876          578888886521    222   2233 444566667788876 46656544        


Q ss_pred             CeEEEEECC-CC---ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeeeeEecCCCCC--------e
Q psy15421        164 MSCALWDIE-TG---QQCASFIGHTGDVMSLSLAPDMRTFVSGACDA--SAKLWDIRDGSCKQTFPGHESD--------I  229 (340)
Q Consensus       164 ~~v~iwd~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg--~i~~wd~~~~~~~~~~~~h~~~--------v  229 (340)
                      ..|.+||+. ++   +.......+...+..++|+||+++++++..++  .|.+||+.+++.......+...        +
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~  296 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGM  296 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTC
T ss_pred             cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccC
Confidence            379999998 56   33333344567899999999999888888888  5666676666654444433222        5


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEE--eCcCCcEEEEeecCCcccceEEE-EEcCCCcEEEEEeCCCc--EEEEeCCCcee
Q psy15421        230 NAVTFFPNGWAFATGSDDATCRLF--DIRADQELAMYSHDNIICGITSV-AFSRSGRLLLAGYDDFN--CNVWDSMKTER  304 (340)
Q Consensus       230 ~~v~~~~~~~~l~s~s~d~~i~iw--d~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~g~~d~~--i~iw~~~~~~~  304 (340)
                      ..++|+|+++.+++++. +.+++|  |...++ +..+...  ...+..+ +++++.-++++++.+..  +..++..+++.
T Consensus       297 ~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~  372 (662)
T 3azo_A          297 RWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA  372 (662)
T ss_dssp             CSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             ceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence            67899999999999998 999999  544443 3333221  2235555 45444444445555544  45556556554


Q ss_pred             eeeeccC
Q psy15421        305 AGILAGH  311 (340)
Q Consensus       305 ~~~~~~h  311 (340)
                      ......|
T Consensus       373 ~~l~~~~  379 (662)
T 3azo_A          373 RTIGARH  379 (662)
T ss_dssp             EEEESCC
T ss_pred             EEeecCC
Confidence            4333334

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.77  E-value=1.8e-17  Score=159.81  Aligned_cols=227  Identities=12%  Similarity=0.049  Sum_probs=156.2

Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcc-----eEEEEEcCCCe-EEEEeCC---------C
Q psy15421        100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGY-----LSCCRFLDDNQ-IVTSSGD---------M  164 (340)
Q Consensus       100 i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~-l~~~~~d---------~  164 (340)
                      ...+.|+|++.+++++  |+.|++|++.++..    ...+.+|...     .....|+++++ ++.++.+         +
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNS----SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCE----EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCce----EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            4578999999999886  89999999987642    2234444432     12256777764 6666554         5


Q ss_pred             eEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeE-ecCCCCCe--------------
Q psy15421        165 SCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQT-FPGHESDI--------------  229 (340)
Q Consensus       165 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~-~~~h~~~v--------------  229 (340)
                      .+.+||+.+++. ..+..+...+...+|+|||+.++.+ .|+.|.+||+.++...+. ..++...+              
T Consensus        93 ~~~~~d~~~~~~-~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           93 SYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEEEECCCCcE-EEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence            677999998874 3466677889999999999999877 478999999988765432 22332222              


Q ss_pred             ---EEEEEecCCCEEEEEeCCC------------------------------------cEEEEeCcC---C---cEEEEe
Q psy15421        230 ---NAVTFFPNGWAFATGSDDA------------------------------------TCRLFDIRA---D---QELAMY  264 (340)
Q Consensus       230 ---~~v~~~~~~~~l~s~s~d~------------------------------------~i~iwd~~~---~---~~~~~~  264 (340)
                         ..+.|+|||++||.++.|.                                    .|++||+.+   +   +... +
T Consensus       171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~-l  249 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ-I  249 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEE-E
T ss_pred             CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEE-e
Confidence               3589999999999876432                                    477888877   5   3222 2


Q ss_pred             ecC----CcccceEEEEEcCCCcEEEEEeC----CCcEEEEeCCCce----ee--eee--ccCCcceE-----EEEECCC
Q psy15421        265 SHD----NIICGITSVAFSRSGRLLLAGYD----DFNCNVWDSMKTE----RA--GIL--AGHDNRVS-----CLGVTED  323 (340)
Q Consensus       265 ~~~----~~~~~i~~~~~s~~~~~l~~g~~----d~~i~iw~~~~~~----~~--~~~--~~h~~~i~-----~~~~s~d  323 (340)
                      ...    .....+..++|+|||+.++....    +..|.+||..+++    +.  ..+  .+|...|.     ..+||||
T Consensus       250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD  329 (740)
T 4a5s_A          250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD  329 (740)
T ss_dssp             CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred             cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence            110    12234789999999997766433    3479999988776    22  222  45766665     7899999


Q ss_pred             CCEEE-Eee-CCCc
Q psy15421        324 GMAVA-TGS-WDSF  335 (340)
Q Consensus       324 ~~~l~-s~s-~D~~  335 (340)
                      |+.|+ ..| .+|.
T Consensus       330 G~~l~~~~s~~~G~  343 (740)
T 4a5s_A          330 GNSFYKIISNEEGY  343 (740)
T ss_dssp             SSEEEEEEECTTSC
T ss_pred             CCEEEEEEEcCCCc
Confidence            99877 665 4454

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.76  E-value=1.7e-15  Score=129.53  Aligned_cols=235  Identities=12%  Similarity=0.085  Sum_probs=166.5

Q ss_pred             eEEeeCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEe-CCCeEE
Q psy15421         90 VHAIPLRSSWVMTCAYAPSGS-FVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSS-GDMSCA  167 (340)
Q Consensus        90 ~~~~~~~~~~i~~v~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~d~~v~  167 (340)
                      +..+..+......++|+|+++ +++++..++.|..|+...+   .   ..+..+...+..+.+.+++.++.+. .++.|.
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~---~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~   93 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---L---SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE   93 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---E---EEEESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred             EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---e---EEEECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence            344445556678899999998 7778888999999997653   2   2233455667788887776655554 468999


Q ss_pred             EEECCCCceEEEEecC----CCCeEEEEEcCCCCEEEE----Ee-------------CCCcEEEEECCCCeeeeEecCCC
Q psy15421        168 LWDIETGQQCASFIGH----TGDVMSLSLAPDMRTFVS----GA-------------CDASAKLWDIRDGSCKQTFPGHE  226 (340)
Q Consensus       168 iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~s----g~-------------~dg~i~~wd~~~~~~~~~~~~h~  226 (340)
                      +||..+++........    ...+..++++|+++++++    |.             ..+.|..++.. ++. ..+..+.
T Consensus        94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~  171 (296)
T 3e5z_A           94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDR  171 (296)
T ss_dssp             EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCC
T ss_pred             EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCC
Confidence            9999877643322211    224668999999998887    33             13456666654 443 3444566


Q ss_pred             CCeEEEEEecCCCEEEEEeCCCcEEEEeCc-CCcE---EEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc
Q psy15421        227 SDINAVTFFPNGWAFATGSDDATCRLFDIR-ADQE---LAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT  302 (340)
Q Consensus       227 ~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~-~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~  302 (340)
                      ...+.++|+|+++.+++.+.++.|++|++. .+..   ...+  ......+..++++++|+++++.  ++.|.+|+.. +
T Consensus       172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g  246 (296)
T 3e5z_A          172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-G  246 (296)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-S
T ss_pred             CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-C
Confidence            678999999999988888888999999986 3332   1222  1122335678999999977766  7889999964 7


Q ss_pred             eeeeeeccCCcceEEEEE-CCCCCEEEEeeCCCcEEe
Q psy15421        303 ERAGILAGHDNRVSCLGV-TEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       303 ~~~~~~~~h~~~i~~~~~-s~d~~~l~s~s~D~~i~i  338 (340)
                      +.+..+..+.. +++++| +|+++.|+.++.++..++
T Consensus       247 ~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~  282 (296)
T 3e5z_A          247 DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI  282 (296)
T ss_dssp             CEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred             CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence            77777777777 999999 689998998888876654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.75  E-value=1.1e-13  Score=117.94  Aligned_cols=276  Identities=10%  Similarity=0.011  Sum_probs=190.8

Q ss_pred             ecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeE-EeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q psy15421         51 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVH-AIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTR  129 (340)
Q Consensus        51 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~  129 (340)
                      +........+++++++++..++...++.|.+||.. ++... .+......+..+++.++++++++...++.|..++.. +
T Consensus        15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence            34456688999999999988887788999999987 44332 223333568899999999988877777888888865 2


Q ss_pred             CCceEEEEeecCCCcceEEEEEcCCCeE-EEEeCCCeEEEEECCCCceEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCc
Q psy15421        130 EGNVRVSRELPGHTGYLSCCRFLDDNQI-VTSSGDMSCALWDIETGQQCAS-FIGHTGDVMSLSLAPDMRTFVSGACDAS  207 (340)
Q Consensus       130 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~sg~~dg~  207 (340)
                        ... ....+........+.+.+++.+ ++...++.|..+|.. ++.... +......+..+++.++++++++...++.
T Consensus        93 --~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~  168 (300)
T 2qc5_A           93 --GFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS  168 (300)
T ss_dssp             --CEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred             --CeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence              221 2223333345666777666554 444457899999987 554322 2223456889999999997777777889


Q ss_pred             EEEEECCCCeeee-EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEE
Q psy15421        208 AKLWDIRDGSCKQ-TFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLL  286 (340)
Q Consensus       208 i~~wd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  286 (340)
                      |..+|. +++... ....+...+.+++++++|..+++....+.|..||. .++... +........+.+++++++|++++
T Consensus       169 i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v  245 (300)
T 2qc5_A          169 IGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE-YDIPTPNARPHAITAGKNSEIWF  245 (300)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEE
T ss_pred             EEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE-EECCCCCCCceEEEECCCCCEEE
Confidence            999998 555433 22334456889999999988887777788999998 333322 22222233578999999999777


Q ss_pred             EEeCCCcEEEEeCCCceee-eeeccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        287 AGYDDFNCNVWDSMKTERA-GILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       287 ~g~~d~~i~iw~~~~~~~~-~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      +...++.|..|+. ++... ..+......+.+++++++|.++++.. + .|..
T Consensus       246 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~  295 (300)
T 2qc5_A          246 TEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGK  295 (300)
T ss_dssp             EETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEE
T ss_pred             eccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEE
Confidence            7767789999997 44332 22333456788999999999777665 4 4443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.75  E-value=1.7e-15  Score=127.54  Aligned_cols=235  Identities=8%  Similarity=-0.025  Sum_probs=163.9

Q ss_pred             cEEEEEECCCCCEEE-EEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceE
Q psy15421         99 WVMTCAYAPSGSFVA-CGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQC  177 (340)
Q Consensus        99 ~i~~v~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~  177 (340)
                      ....+++++++++++ +...++.|.+|+......    ......+......+.+.+++.+..+..++.|..||.......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT----TVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC---------EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCccc----ceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEe
Confidence            567889999999777 546788898888643321    111112223455566766665555555889999998765432


Q ss_pred             EEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCc
Q psy15421        178 ASFI-GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIR  256 (340)
Q Consensus       178 ~~~~-~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  256 (340)
                       .+. .....+..+++.|+++++++...++.|.+|+..+.............+.+++++|+|+.+++...++.|.+||..
T Consensus       101 -~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~  179 (270)
T 1rwi_B          101 -VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE  179 (270)
T ss_dssp             -ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred             -eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence             222 223568899999999988887788999999866544332222233457889999999988888778999999987


Q ss_pred             CCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcE
Q psy15421        257 ADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFL  336 (340)
Q Consensus       257 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i  336 (340)
                      ........ ... ...+..++++|+|.++++...++.|.+|+............+...+.+++++++|+.+++.+.++.|
T Consensus       180 ~~~~~~~~-~~~-~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v  257 (270)
T 1rwi_B          180 SNNQVVLP-FTD-ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV  257 (270)
T ss_dssp             TCCEEECC-CSS-CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred             CCceEeec-ccC-CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence            65443221 111 1357899999999888888788899999976544333333445678999999999999999999999


Q ss_pred             EecC
Q psy15421        337 RIWN  340 (340)
Q Consensus       337 ~iW~  340 (340)
                      ++++
T Consensus       258 ~~~~  261 (270)
T 1rwi_B          258 VKLT  261 (270)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.75  E-value=2.5e-15  Score=144.09  Aligned_cols=247  Identities=10%  Similarity=0.079  Sum_probs=169.2

Q ss_pred             CccCcEEEEEEcCCCCeEEEEeCCC-----eEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCe-------
Q psy15421         53 GHLAKIYAMHWGSDSRNLVSASQDG-----KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI-------  120 (340)
Q Consensus        53 ~h~~~v~~~~~s~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~-------  120 (340)
                      +|...+..++|||||++|+.++.++     .|++||+.+++.......+ ..+..++|+|||+.|+.+..++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3445688999999999998776543     8999999988765432211 12557899999999999887765       


Q ss_pred             ---------EEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCe-EEEEeC-----CCeEEEEECCC------Cc-eEE
Q psy15421        121 ---------CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSSG-----DMSCALWDIET------GQ-QCA  178 (340)
Q Consensus       121 ---------v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~-----d~~v~iwd~~~------~~-~~~  178 (340)
                               |.+|++.++...-........|...+....|++++. |+.++.     +..|.+||+.+      +. ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     899998765432223333344556666778887764 554443     57899999986      43 355


Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCe--eeeEecCCCC--CeEEEEEecCCCEEEEEeCCCc-
Q psy15421        179 SFIGHTGDVMSLSLAPDMRTFVSGACD----ASAKLWDIRDGS--CKQTFPGHES--DINAVTFFPNGWAFATGSDDAT-  249 (340)
Q Consensus       179 ~~~~~~~~v~~~~~~~~~~~~~sg~~d----g~i~~wd~~~~~--~~~~~~~h~~--~v~~v~~~~~~~~l~s~s~d~~-  249 (340)
                      .+..+...+.. .|+|+++.++..+.+    +.|.+||+.++.  ....+..|..  .+..++|++++..+++...|+. 
T Consensus       281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~  359 (710)
T 2xdw_A          281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (710)
T ss_dssp             EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence            66666665554 478888877655543    469999998764  2244444443  6788999988888899988885 


Q ss_pred             -EEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEe----CCCcEEEEeCCCce
Q psy15421        250 -CRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY----DDFNCNVWDSMKTE  303 (340)
Q Consensus       250 -i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~----~d~~i~iw~~~~~~  303 (340)
                       |++||+.+++.+..+...  ...+..+.++|+++.++...    ..+++..||..+++
T Consensus       360 ~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          360 TLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence             556676555554444322  33477889999987766432    34789999987765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.73  E-value=2.1e-16  Score=140.41  Aligned_cols=241  Identities=11%  Similarity=-0.017  Sum_probs=153.3

Q ss_pred             EeCCCCCeeEEeeCCCCc-----EEEEEECCCCCEEEEEeCC---CeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC
Q psy15421         82 WDSYTTNKVHAIPLRSSW-----VMTCAYAPSGSFVACGGLD---NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD  153 (340)
Q Consensus        82 wd~~~~~~~~~~~~~~~~-----i~~v~~~~~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  153 (340)
                      .|..+++.+..+..+...     +..++|+|+|++++.....   ..+.+|++..++  ..  .....+........|++
T Consensus        15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~--~~--~l~~~~~~~~~~~~~sp   90 (396)
T 3c5m_A           15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ--AV--QLTEGKGDNTFGGFIST   90 (396)
T ss_dssp             ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE--EE--ECCCSSCBCTTTCEECT
T ss_pred             ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc--EE--EeecCCCCccccceECC
Confidence            366666665555443222     5567899999998776543   356777765432  11  11122222222245676


Q ss_pred             CC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEE-------------------EEEcCCCCEEEEE-----eCCCcE
Q psy15421        154 DN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMS-------------------LSLAPDMRTFVSG-----ACDASA  208 (340)
Q Consensus       154 ~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~sg-----~~dg~i  208 (340)
                      ++ .|+.++.++.+.+||+.+++.......+......                   +.++|+++.++..     ..+..|
T Consensus        91 dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l  170 (396)
T 3c5m_A           91 DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL  170 (396)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence            65 5778888889999999988765444434332222                   3457777766543     467789


Q ss_pred             EEEECCCCeeeeEecCCCCCeEEEEEec-CCCEEEEEeCC------CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCC
Q psy15421        209 KLWDIRDGSCKQTFPGHESDINAVTFFP-NGWAFATGSDD------ATCRLFDIRADQELAMYSHDNIICGITSVAFSRS  281 (340)
Q Consensus       209 ~~wd~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  281 (340)
                      .+||+.+++..... .+...+..+.|+| ++..++..+.+      ..|.+||....+...... ......+..++|+|+
T Consensus       171 ~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spd  248 (396)
T 3c5m_A          171 IKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTHEFWIPD  248 (396)
T ss_dssp             EEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEEEEECTT
T ss_pred             EEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCCCccccceEECCC
Confidence            99999988765444 4566789999999 78877766543      358888886554332222 111224778899999


Q ss_pred             CcEEEEEeCC-----CcEEEEeCCCceeeeeeccCCcceEEEEECC-CCCEEEEee
Q psy15421        282 GRLLLAGYDD-----FNCNVWDSMKTERAGILAGHDNRVSCLGVTE-DGMAVATGS  331 (340)
Q Consensus       282 ~~~l~~g~~d-----~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~-d~~~l~s~s  331 (340)
                      |++|+.++.+     +.|++||..+++...... ... .. +.|+| ||++|+.++
T Consensus       249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          249 GSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             SSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEE
T ss_pred             CCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEec
Confidence            9987776544     449999987765433221 112 23 88999 999888765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.73  E-value=7.3e-15  Score=127.66  Aligned_cols=255  Identities=9%  Similarity=-0.021  Sum_probs=175.7

Q ss_pred             CCCeEEEEeCCCCCeeEEee------CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEE
Q psy15421         75 QDGKLIVWDSYTTNKVHAIP------LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSC  148 (340)
Q Consensus        75 ~d~~i~iwd~~~~~~~~~~~------~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~  148 (340)
                      .+++|.++|..+++....+.      ........+.+. +++.+++...++.|.++|..+++    ....++. ......
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~----~~~~i~~-~~~p~~   88 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFK----EVGRITG-FTSPRY   88 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCC----EEEEEEC-CSSEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccE----EEEEcCC-CCCCcE
Confidence            48999999999887654331      111334566664 45555666678999999987654    2223332 233455


Q ss_pred             EEEcCCCeEEEEe-CCCeEEEEECCCCceEEEEecCC-----CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeeeE
Q psy15421        149 CRFLDDNQIVTSS-GDMSCALWDIETGQQCASFIGHT-----GDVMSLSLAPDMRTFVSGA-CDASAKLWDIRDGSCKQT  221 (340)
Q Consensus       149 ~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~sg~-~dg~i~~wd~~~~~~~~~  221 (340)
                      +.+.+++++..+. .++.|.+||+.+++....+....     ..+..+++ .+++.+++.. .++.|.++|.++++....
T Consensus        89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~  167 (328)
T 3dsm_A           89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDE  167 (328)
T ss_dssp             EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEE
T ss_pred             EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEE
Confidence            6664555665555 79999999999988776655322     14556777 4444555544 489999999999988777


Q ss_pred             ecCCCCCeEEEEEecCCCEEEEEeCC----------CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCC
Q psy15421        222 FPGHESDINAVTFFPNGWAFATGSDD----------ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD  291 (340)
Q Consensus       222 ~~~h~~~v~~v~~~~~~~~l~s~s~d----------~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d  291 (340)
                      ++. ......++++|+|+.++++..+          +.|.++|..+.+....+.... ...+..++|+|++++|.++.. 
T Consensus       168 i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~-  244 (328)
T 3dsm_A          168 LTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN-  244 (328)
T ss_dssp             EEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS-
T ss_pred             EEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc-
Confidence            764 3345688999999988877665          789999998877655543221 124789999999998888755 


Q ss_pred             CcEEEEeCCCceeee--eeccCCcceEEEEECC-CCCEEEEe----eCCCcEEecC
Q psy15421        292 FNCNVWDSMKTERAG--ILAGHDNRVSCLGVTE-DGMAVATG----SWDSFLRIWN  340 (340)
Q Consensus       292 ~~i~iw~~~~~~~~~--~~~~h~~~i~~~~~s~-d~~~l~s~----s~D~~i~iW~  340 (340)
                       .|.+||..+++...  .+..+......++++| ++..+++.    +.++.|.+||
T Consensus       245 -~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d  299 (328)
T 3dsm_A          245 -DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS  299 (328)
T ss_dssp             -SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred             -EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence             89999987766432  1222246788999999 56667776    6788999986

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.73  E-value=6.6e-15  Score=141.21  Aligned_cols=236  Identities=12%  Similarity=0.020  Sum_probs=160.6

Q ss_pred             CcEEEEEECCCCCEEEEEeCCC-----eEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCe------
Q psy15421         98 SWVMTCAYAPSGSFVACGGLDN-----ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMS------  165 (340)
Q Consensus        98 ~~i~~v~~~~~~~~l~~~~~d~-----~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~------  165 (340)
                      ..+..++|||||++|+.+..++     .|++||+.+++..   ...+..  ..+..+.|++++ .|+.++.++.      
T Consensus       125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~---~~~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~  199 (710)
T 2xdw_A          125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL---PDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (710)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE---EEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC---cccccC--cccceEEEEeCCCEEEEEEECCccccccc
Confidence            3577899999999998776543     8999999765421   111211  114456788765 5777766655      


Q ss_pred             ----------EEEEECCCCceE--EEEec--CCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCC------Ce-ee
Q psy15421        166 ----------CALWDIETGQQC--ASFIG--HTGDVMSLSLAPDMRTFVSGAC-----DASAKLWDIRD------GS-CK  219 (340)
Q Consensus       166 ----------v~iwd~~~~~~~--~~~~~--~~~~v~~~~~~~~~~~~~sg~~-----dg~i~~wd~~~------~~-~~  219 (340)
                                |.+|++.+++..  ..+..  +...+..+.|+||+++++.++.     +..|.+||+.+      +. ..
T Consensus       200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~  279 (710)
T 2xdw_A          200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (710)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence                      999999887632  22222  4555789999999998887654     67899999976      43 34


Q ss_pred             eEecCCCCCeEEEEEecCCCEEEEEeCC----CcEEEEeCcCCcE---EEEeecCCcccceEEEEEcCCCcEEEEEeCCC
Q psy15421        220 QTFPGHESDINAVTFFPNGWAFATGSDD----ATCRLFDIRADQE---LAMYSHDNIICGITSVAFSRSGRLLLAGYDDF  292 (340)
Q Consensus       220 ~~~~~h~~~v~~v~~~~~~~~l~s~s~d----~~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~  292 (340)
                      ..+..+...+.. .|+|+|..|+..+.+    +.|.+||+.+...   .....+.. ...+..+.|++++.++++...|+
T Consensus       280 ~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~lv~~~~~~g  357 (710)
T 2xdw_A          280 VKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE-KDVLEWVACVRSNFLVLCYLHDV  357 (710)
T ss_dssp             EEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SCEEEEEEEETTTEEEEEEEETT
T ss_pred             EEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC-CCeEEEEEEEcCCEEEEEEEECC
Confidence            556566665554 488888887766553    3599999876531   22222222 12477889998888999999998


Q ss_pred             c--EEEEeCCCceeeeeeccCCcceEEEEECCCCCEEE-Eee---CCCcEEecC
Q psy15421        293 N--CNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVA-TGS---WDSFLRIWN  340 (340)
Q Consensus       293 ~--i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~-s~s---~D~~i~iW~  340 (340)
                      .  |.+|+..+++....+..+.+.|..++++|++..|+ +.+   ..++|.+||
T Consensus       358 ~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          358 KNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             EEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred             EEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence            5  55667656776677777888899999999997655 322   246777764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.73  E-value=5.1e-15  Score=129.31  Aligned_cols=234  Identities=9%  Similarity=0.056  Sum_probs=153.1

Q ss_pred             CcEEEEEEcCCCCeEEEEeCC---C--eEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC------------
Q psy15421         56 AKIYAMHWGSDSRNLVSASQD---G--KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD------------  118 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d---~--~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d------------  118 (340)
                      ..+..++|+|||+.|+.++.+   +  .|.+||+.+++.......+ . +..++|+|+|+.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            457889999999999887754   3  3778888877655444433 3 8899999999998887643            


Q ss_pred             ---------------CeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCC------C-eEEEEECCCCce
Q psy15421        119 ---------------NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGD------M-SCALWDIETGQQ  176 (340)
Q Consensus       119 ---------------~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d------~-~v~iwd~~~~~~  176 (340)
                                     ..+.+|++.+++.. ....   . . .+....|++++.++++..+      . ...+|.+.+++ 
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~-~~l~---~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~-  209 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVI-EEFE---K-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGK-  209 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEE-EEEE---E-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTE-
T ss_pred             cceeecCcccccCccceEEEEECCCCeEE-eeec---C-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCc-
Confidence                           45777887654310 1111   1 2 4566777777744444443      2 44555544443 


Q ss_pred             EEEEecCCCCeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCeeeeEecCCCCCeEE-EEEecCCCEEEEEeCC
Q psy15421        177 CASFIGHTGDVMSLSLAPDMRTFVSGACD--------ASAKLWDIRDGSCKQTFPGHESDINA-VTFFPNGWAFATGSDD  247 (340)
Q Consensus       177 ~~~~~~~~~~v~~~~~~~~~~~~~sg~~d--------g~i~~wd~~~~~~~~~~~~h~~~v~~-v~~~~~~~~l~s~s~d  247 (340)
                      ...+..+ ..+..+  +|+++.++.++.+        ..|.+||  +++......+|...+.. +.|+ ++ .+++++.+
T Consensus       210 ~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~  282 (347)
T 2gop_A          210 EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEE  282 (347)
T ss_dssp             EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred             eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecC
Confidence            3444444 445544  9999988876654        3688888  56555555666777886 8999 88 99999999


Q ss_pred             CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcE-EEEeCCCceeeeeeccCCc
Q psy15421        248 ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNC-NVWDSMKTERAGILAGHDN  313 (340)
Q Consensus       248 ~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i-~iw~~~~~~~~~~~~~h~~  313 (340)
                      +.+++| +..++.......   ...+.+++|+|  .++++++.++.. ++|... ++ ...+..|..
T Consensus       283 ~~~~l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~  341 (347)
T 2gop_A          283 GSVNLY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYND  341 (347)
T ss_dssp             TEEEEE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred             CcEEEE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence            999999 875444333322   23588999999  677777766654 677654 33 344555543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.72  E-value=6.8e-14  Score=121.54  Aligned_cols=242  Identities=10%  Similarity=0.033  Sum_probs=166.0

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC----CeE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD----NIC  121 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d----~~v  121 (340)
                      .....+.++...+.+++|++++++++++..++.|.+||..+++.......+...+..++++|+++++++...+    +.|
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i  114 (333)
T 2dg1_A           35 EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGI  114 (333)
T ss_dssp             EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred             ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence            3445677788888999999999988888899999999998877654443456779999999999988877666    678


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeC-------CCeEEEEECCCCceEEEEecCCCCeEEEEEcC
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSG-------DMSCALWDIETGQQCASFIGHTGDVMSLSLAP  194 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~-------d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  194 (340)
                      .+|+...+...  .......+...+..+.+.+++.+..+..       .+.|..+|..+++. ..+......+..++|+|
T Consensus       115 ~~~d~~~~~~~--~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~~  191 (333)
T 2dg1_A          115 FAATENGDNLQ--DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNISVANGIALST  191 (333)
T ss_dssp             EEECTTSCSCE--EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECT
T ss_pred             EEEeCCCCEEE--EEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE-EEeecCCCcccceEECC
Confidence            88987654321  1111112344577778877776555544       24566666655443 23333334578999999


Q ss_pred             CCCEE-EEEeCCCcEEEEECCC-Ceeee--------EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEe
Q psy15421        195 DMRTF-VSGACDASAKLWDIRD-GSCKQ--------TFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMY  264 (340)
Q Consensus       195 ~~~~~-~sg~~dg~i~~wd~~~-~~~~~--------~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  264 (340)
                      +++.+ ++.+.++.|.+||+++ +....        .+.++ ..+..++++++|..+++...++.|.+||.. ++.+..+
T Consensus       192 dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~  269 (333)
T 2dg1_A          192 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQI  269 (333)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEE
T ss_pred             CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEE
Confidence            99855 4556689999999863 33221        12222 357889999999988888888999999984 4454444


Q ss_pred             ecCCc----ccceEEEEEcCCCcEEEEEeCCC
Q psy15421        265 SHDNI----ICGITSVAFSRSGRLLLAGYDDF  292 (340)
Q Consensus       265 ~~~~~----~~~i~~~~~s~~~~~l~~g~~d~  292 (340)
                      .....    ...+.+++|+|+++.|++++.++
T Consensus       270 ~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          270 LIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             ECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             EcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            32221    11378899999987777666553

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.72  E-value=3e-16  Score=150.14  Aligned_cols=247  Identities=10%  Similarity=-0.028  Sum_probs=164.5

Q ss_pred             CccCcEEEEEEcCCCCeEE-----EEeCCCeEEEEeCCCCCee-EEeeCCCCcEEEEEECCCCCEEEEEeCCCe------
Q psy15421         53 GHLAKIYAMHWGSDSRNLV-----SASQDGKLIVWDSYTTNKV-HAIPLRSSWVMTCAYAPSGSFVACGGLDNI------  120 (340)
Q Consensus        53 ~h~~~v~~~~~s~~~~~l~-----s~~~d~~i~iwd~~~~~~~-~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~------  120 (340)
                      +|...+..++|||||++|+     +|+.+.+|++||+.+++.+ .. .........++|+|||+.|+.++.+..      
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence            4656789999999999988     4445678999999988764 21 111111257889999999999988776      


Q ss_pred             -------EEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCC----eEEEEECCCCceEEEEecCCCCeE
Q psy15421        121 -------CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDM----SCALWDIETGQQCASFIGHTGDVM  188 (340)
Q Consensus       121 -------v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~----~v~iwd~~~~~~~~~~~~~~~~v~  188 (340)
                             |++|++.++...-........+...+....+++++ .++.++.++    .|.+|+..+++ ...+..+...+.
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~  275 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKY  275 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCE
T ss_pred             cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceE
Confidence                   99999876543323334444565677778888776 466555544    56667665544 345555555566


Q ss_pred             EEEEcCCCCEEEEEe---CCCcEEEEECCCCee---eeEecCC-CCCeEEEEEecCCCEEEEEeCCCcEEEEeCc-CCcE
Q psy15421        189 SLSLAPDMRTFVSGA---CDASAKLWDIRDGSC---KQTFPGH-ESDINAVTFFPNGWAFATGSDDATCRLFDIR-ADQE  260 (340)
Q Consensus       189 ~~~~~~~~~~~~sg~---~dg~i~~wd~~~~~~---~~~~~~h-~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~-~~~~  260 (340)
                      ...+ +++.+++...   .++.|.+||+.++..   ...+..+ ...+..++++ ++..+++...|+..++|.+. .++.
T Consensus       276 ~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~  353 (695)
T 2bkl_A          276 EVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKP  353 (695)
T ss_dssp             EEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCE
T ss_pred             EEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCe
Confidence            6666 4555444444   368999999987653   3333333 4457888888 67788999999998888765 3333


Q ss_pred             EEEeecCCcccceEEEEEcCCCcEEEEEe----CCCcEEEEeCCCcee
Q psy15421        261 LAMYSHDNIICGITSVAFSRSGRLLLAGY----DDFNCNVWDSMKTER  304 (340)
Q Consensus       261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~----~d~~i~iw~~~~~~~  304 (340)
                      +..+.... ...+..+.++|+++.++...    ..++|++||..+++.
T Consensus       354 ~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          354 VRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             eEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            33332111 22366778899998777433    347899999877653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.71  E-value=8e-15  Score=123.40  Aligned_cols=239  Identities=8%  Similarity=-0.032  Sum_probs=163.3

Q ss_pred             cEEEEEEcCCCCeEE-EEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEE
Q psy15421         57 KIYAMHWGSDSRNLV-SASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV  135 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  135 (340)
                      ...++++++++++++ +...++.|.+||..+.........+...+..++++++++++++.. ++.|.+|+.....  .. 
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~--~~-  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN--QT-  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC--CE-
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce--Ee-
Confidence            668899999999777 557789999999765443222122234567889999999766655 8889999875432  11 


Q ss_pred             EEeecCCCcceEEEEEcCCCeE-EEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy15421        136 SRELPGHTGYLSCCRFLDDNQI-VTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIR  214 (340)
Q Consensus       136 ~~~~~~~~~~v~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~  214 (340)
                       ............+.+.+++.+ ++...++.|.+|+..+.............+..++++|+++++++...++.|.+||..
T Consensus       101 -~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~  179 (270)
T 1rwi_B          101 -VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE  179 (270)
T ss_dssp             -ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred             -eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence             111122234566777666554 444567889999866544332222233457889999999988887778999999987


Q ss_pred             CCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcE
Q psy15421        215 DGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNC  294 (340)
Q Consensus       215 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i  294 (340)
                      ..........+...+.+++++++|..+++...++.|.+||........ ..... ...+..++++|+|+++++...++.|
T Consensus       180 ~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~-~~~p~~i~~~~~g~l~v~~~~~~~v  257 (270)
T 1rwi_B          180 SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTG-LNTPLAVAVDSDRTVYVADRGNDRV  257 (270)
T ss_dssp             TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCS-CSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred             CCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCC-CCCceeEEECCCCCEEEEECCCCEE
Confidence            765443333333668899999999888888888999999987543322 21111 2347899999999999999999999


Q ss_pred             EEEeCCCc
Q psy15421        295 NVWDSMKT  302 (340)
Q Consensus       295 ~iw~~~~~  302 (340)
                      ++++....
T Consensus       258 ~~~~~~~~  265 (270)
T 1rwi_B          258 VKLTSLEH  265 (270)
T ss_dssp             EEECCCGG
T ss_pred             EEEcCCCc
Confidence            99996544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.71  E-value=3.9e-14  Score=123.04  Aligned_cols=243  Identities=10%  Similarity=-0.062  Sum_probs=169.0

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEE
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV  135 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  135 (340)
                      .....+.+. +++.+++...++.|.+||..+++.+..+.. ......++++++++.+++...++.|.+||..+..    +
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~----~  117 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYE----I  117 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTE----E
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCe----E
Confidence            345677774 455666667789999999999998887754 3557888998888555554488999999987643    2


Q ss_pred             EEeecCCC-----cceEEEEEcCCCeEEEEe--CCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC---
Q psy15421        136 SRELPGHT-----GYLSCCRFLDDNQIVTSS--GDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD---  205 (340)
Q Consensus       136 ~~~~~~~~-----~~v~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d---  205 (340)
                      ...++...     .....+.+ +++.+..+.  .++.|.++|+.+++....+.. ......++++|++++++++..+   
T Consensus       118 ~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~  195 (328)
T 3dsm_A          118 TGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEG  195 (328)
T ss_dssp             EEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTT
T ss_pred             EEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccC
Confidence            22222111     02223334 455555554  388999999999887776654 3346788999999988877665   


Q ss_pred             -------CcEEEEECCCCeeeeEecCC-CCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEE
Q psy15421        206 -------ASAKLWDIRDGSCKQTFPGH-ESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVA  277 (340)
Q Consensus       206 -------g~i~~wd~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  277 (340)
                             +.|.++|.++++....+.-. ......++++|++..+..+..  .|.+||..+.+.............+..++
T Consensus       196 ~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~  273 (328)
T 3dsm_A          196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLT  273 (328)
T ss_dssp             CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEE
T ss_pred             CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEE
Confidence                   89999999998877666432 236889999999888877654  89999988765421100010023478899


Q ss_pred             EcC-CCcEEEEE----eCCCcEEEEeCCCceeeeeec
Q psy15421        278 FSR-SGRLLLAG----YDDFNCNVWDSMKTERAGILA  309 (340)
Q Consensus       278 ~s~-~~~~l~~g----~~d~~i~iw~~~~~~~~~~~~  309 (340)
                      ++| ++.++++.    ..++.|.+|+.. ++.+..+.
T Consensus       274 vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          274 VNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             ECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred             EcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence            999 56666666    678899999976 77666553

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.70  E-value=3.3e-15  Score=142.92  Aligned_cols=237  Identities=11%  Similarity=-0.017  Sum_probs=156.1

Q ss_pred             CCCcEEEEEECCCCCEEE-----EEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCe----
Q psy15421         96 RSSWVMTCAYAPSGSFVA-----CGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMS----  165 (340)
Q Consensus        96 ~~~~i~~v~~~~~~~~l~-----~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~----  165 (340)
                      |...+..++|||||++||     .|+.+..|++||+.+++...  ...+....  ...+.|++++ .|+.++.|..    
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~--~~~~~wspDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGK--YATPKWTPDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCT--TCCCEECTTSSEEEEEECCCCTTSC
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCccc--ccceEEecCCCEEEEEEecCCCCCc
Confidence            444688899999999998     34445789999998764210  01111111  1456787775 5777777665    


Q ss_pred             ---------EEEEECCCCce----EEEEecCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEECCCCeeeeEecCCCCC
Q psy15421        166 ---------CALWDIETGQQ----CASFIGHTGDVMSLSLAPDMRTFVSGACDA----SAKLWDIRDGSCKQTFPGHESD  228 (340)
Q Consensus       166 ---------v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg----~i~~wd~~~~~~~~~~~~h~~~  228 (340)
                               |.+|++.+++.    +.....+...+..+.|+||+++++.++.++    .|.+|+..++.. ..+..+...
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~  273 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGA  273 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSC
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCc
Confidence                     99999988762    222223456788999999999988777666    777777655543 344445555


Q ss_pred             eEEEEEecCCCEEEEEe---CCCcEEEEeCcCCcE---EEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCC-C
Q psy15421        229 INAVTFFPNGWAFATGS---DDATCRLFDIRADQE---LAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM-K  301 (340)
Q Consensus       229 v~~v~~~~~~~~l~s~s---~d~~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~-~  301 (340)
                      +....+ ++|..+++..   .++.|.+||+.+...   .....+. ....+..++|+ ++.++++...|+..++|... +
T Consensus       274 ~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~  350 (695)
T 2bkl_A          274 KYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED-SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK  350 (695)
T ss_dssp             CEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC-SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred             eEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence            666666 6666444443   258899999876542   2222222 12246778888 77889999999998888643 3


Q ss_pred             ceeeeeeccC-CcceEEEEECCCCCEEE----EeeCCCcEEecC
Q psy15421        302 TERAGILAGH-DNRVSCLGVTEDGMAVA----TGSWDSFLRIWN  340 (340)
Q Consensus       302 ~~~~~~~~~h-~~~i~~~~~s~d~~~l~----s~s~D~~i~iW~  340 (340)
                      ++....+..+ .+.|..++++||+..|+    +...+++|++||
T Consensus       351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d  394 (695)
T 2bkl_A          351 GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTS  394 (695)
T ss_dssp             CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEE
T ss_pred             CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence            4445555554 67788899999998766    333457788875

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.70  E-value=5.7e-14  Score=118.83  Aligned_cols=216  Identities=12%  Similarity=0.082  Sum_probs=161.4

Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCC-CcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCC
Q psy15421         65 SDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRS-SWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT  143 (340)
Q Consensus        65 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~  143 (340)
                      ..++.|++++.|+.|++||..+++.+..++.+. ..+.++.++|+|++++  +.++.|..|+. +++  ....... ...
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~--~~W~~~~-~~~   76 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR--ELWNIAA-PAG   76 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC--EEEEEEC-CTT
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC--EEEEEcC-CCC
Confidence            456789999999999999999999999988766 4678899999999998  34677888886 433  2222222 122


Q ss_pred             cceEEEEEcCCC-eEEEEeC-CCeEEEEECCCCceEEEEec------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy15421        144 GYLSCCRFLDDN-QIVTSSG-DMSCALWDIETGQQCASFIG------HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRD  215 (340)
Q Consensus       144 ~~v~~~~~~~~~-~l~~~~~-d~~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~  215 (340)
                      ..+..+.+.+++ .+++.+. ++.+..+|. .++.+..+..      +......+++.++++++++...++.|..||.+ 
T Consensus        77 ~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-  154 (276)
T 3no2_A           77 CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-  154 (276)
T ss_dssp             CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence            356666666665 5666666 677777776 5676665542      11234556788999999999999999999987 


Q ss_pred             CeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCC----cccceEEEEEcCCCcEEEEEe
Q psy15421        216 GSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDN----IICGITSVAFSRSGRLLLAGY  289 (340)
Q Consensus       216 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~g~  289 (340)
                      |+.+..+... ..+.++.+.++|..+++++.++.|..+|..+++.+..+....    ....+..+...++|.++++.+
T Consensus       155 G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          155 GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            9888887654 345577888999999999988899999999888888875322    112367888899999998875

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.70  E-value=6.5e-13  Score=123.18  Aligned_cols=280  Identities=16%  Similarity=0.114  Sum_probs=186.7

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCeEEEEeCC--CCCeeEEeeCCCCcEEEEEEC----CCCCEEEEEeC-CCeEEEEEccCC
Q psy15421         57 KIYAMHWGSDSRNLVSASQDGKLIVWDSY--TTNKVHAIPLRSSWVMTCAYA----PSGSFVACGGL-DNICSIYSLKTR  129 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~i~~v~~~----~~~~~l~~~~~-d~~v~i~~~~~~  129 (340)
                      .+..+.|+||++++++++.|+.|.+||+.  +.+.+..++... ....++|+    |+|++++++.. ++.+.++|..+.
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~  276 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL  276 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence            56789999999999999999999999995  777777777644 35688999    69999887765 489999997664


Q ss_pred             CCceEEEE-ee--cC---CCc-ceEEEEEcCCC--eEEEEeCCCeEEEEECCCCceEEE-EecCCCCeEEEEEcCCCCEE
Q psy15421        130 EGNVRVSR-EL--PG---HTG-YLSCCRFLDDN--QIVTSSGDMSCALWDIETGQQCAS-FIGHTGDVMSLSLAPDMRTF  199 (340)
Q Consensus       130 ~~~~~~~~-~~--~~---~~~-~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~  199 (340)
                      +....+.. ..  .+   |.. .+..+..++++  .++....++.|.++|....+.... ..........+.|+|+++++
T Consensus       277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~  356 (567)
T 1qks_A          277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF  356 (567)
T ss_dssp             CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE
T ss_pred             cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE
Confidence            32111110 00  00   112 45555555443  344556679999999876543221 12233456788999999988


Q ss_pred             EEEe-CCCcEEEEECCCCeeeeEecC-----CCCCeEEEEEecC-CCEEEEEe-CCCcEEEEeCcC-------CcEEEEe
Q psy15421        200 VSGA-CDASAKLWDIRDGSCKQTFPG-----HESDINAVTFFPN-GWAFATGS-DDATCRLFDIRA-------DQELAMY  264 (340)
Q Consensus       200 ~sg~-~dg~i~~wd~~~~~~~~~~~~-----h~~~v~~v~~~~~-~~~l~s~s-~d~~i~iwd~~~-------~~~~~~~  264 (340)
                      +++. .++.|.++|+.+++.+..+.-     |.+....+ ++|+ +..++++. .++.|.++|...       .+.+..+
T Consensus       357 ~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i  435 (567)
T 1qks_A          357 ITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSF  435 (567)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred             EEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEE
Confidence            7655 689999999999987765543     43322222 5787 55555553 568999999886       4455544


Q ss_pred             ecCCcccceEEEEEcCCCcEEEEEeC-------CCcEEEEeCCCc-----eee-eeec--------cCCcceEEEEECCC
Q psy15421        265 SHDNIICGITSVAFSRSGRLLLAGYD-------DFNCNVWDSMKT-----ERA-GILA--------GHDNRVSCLGVTED  323 (340)
Q Consensus       265 ~~~~~~~~i~~~~~s~~~~~l~~g~~-------d~~i~iw~~~~~-----~~~-~~~~--------~h~~~i~~~~~s~d  323 (340)
                      ....  .+-..+..+|++++|.+...       ...|.++|..+.     ... ..+.        .-...+..+.|+|+
T Consensus       436 ~~~g--~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (567)
T 1qks_A          436 PALG--GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKD  513 (567)
T ss_dssp             ECSC--SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTT
T ss_pred             ecCC--CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCC
Confidence            3322  12234678999999988663       358999998766     211 2221        12357888999999


Q ss_pred             CCEEEEee-----CCCcEEecC
Q psy15421        324 GMAVATGS-----WDSFLRIWN  340 (340)
Q Consensus       324 ~~~l~s~s-----~D~~i~iW~  340 (340)
                      |.++..+-     .++.|.|.|
T Consensus       514 G~~~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          514 GTEVWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             SSEEEEEEECCTTSCCEEEEEE
T ss_pred             CCEEEEEeecCCCCCCcEEEEE
Confidence            98766543     267777764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.68  E-value=1e-12  Score=111.95  Aligned_cols=236  Identities=9%  Similarity=0.043  Sum_probs=167.0

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEE-eCCCeEEEEECCC
Q psy15421         95 LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTS-SGDMSCALWDIET  173 (340)
Q Consensus        95 ~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~-~~d~~v~iwd~~~  173 (340)
                      .+...+.++++.++|+++++...++.+.+|+.. +  ... ....+.+...+..+.+.+++.+..+ ..++.|..||.. 
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~--~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-G--KIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-   86 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C--CEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-C--CeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence            334568899999999988877768889999875 2  221 1222334456677777666655444 457889999986 


Q ss_pred             CceEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeee-EecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy15421        174 GQQCASFI--GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQ-TFPGHESDINAVTFFPNGWAFATGSDDATC  250 (340)
Q Consensus       174 ~~~~~~~~--~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i  250 (340)
                      ++. ..+.  .....+..+++.|++.++++...++.|..||. +++... ....+...+..++++++|..+++...++.|
T Consensus        87 g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i  164 (299)
T 2z2n_A           87 GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI  164 (299)
T ss_dssp             SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence            332 2222  24456889999999988888778899999998 554432 233345578999999999888887778899


Q ss_pred             EEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeee-eccCCcceEEEEECCCCCEEEE
Q psy15421        251 RLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGI-LAGHDNRVSCLGVTEDGMAVAT  329 (340)
Q Consensus       251 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~-~~~h~~~i~~~~~s~d~~~l~s  329 (340)
                      ..||. +++... +........+..++++++++++++...++.|..|+. +++.... +..+...+.+++++++|..+++
T Consensus       165 ~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~  241 (299)
T 2z2n_A          165 GRITE-SGDITE-FKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT  241 (299)
T ss_dssp             EEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EEEcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe
Confidence            99998 444332 222222335789999999998887777889999997 5553322 3345577899999999997777


Q ss_pred             eeCCCcEEecC
Q psy15421        330 GSWDSFLRIWN  340 (340)
Q Consensus       330 ~s~D~~i~iW~  340 (340)
                      ...++.|.+||
T Consensus       242 ~~~~~~i~~~d  252 (299)
T 2z2n_A          242 EWGANKIGRLT  252 (299)
T ss_dssp             ETTTTEEEEEE
T ss_pred             ccCCceEEEEC
Confidence            66677887764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.67  E-value=1.2e-13  Score=116.91  Aligned_cols=213  Identities=14%  Similarity=0.034  Sum_probs=163.2

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCC-cceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCC-C
Q psy15421        108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHT-G  185 (340)
Q Consensus       108 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-~  185 (340)
                      .++++++++.++.|.+||..+++.    ...++.+. ..+..+.+.+++.++. +.++.|..||. +++.+..+..+. .
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~----~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~   77 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEI----VWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGC   77 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEE----EEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeE----EEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence            468889999999999999766542    23333333 3455666777776655 56888999999 788888887653 4


Q ss_pred             CeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeeeEec------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCC
Q psy15421        186 DVMSLSLAPDMRTFVSGAC-DASAKLWDIRDGSCKQTFP------GHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD  258 (340)
Q Consensus       186 ~v~~~~~~~~~~~~~sg~~-dg~i~~wd~~~~~~~~~~~------~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  258 (340)
                      .+.++.+.|+++.+++.+. ++.|..+|. +++.+..+.      .+......+++.++|.++++...++.|..||.. +
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G  155 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G  155 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence            6888999999999999887 788888885 677655543      122245567789999999999999999999998 8


Q ss_pred             cEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCC------cceEEEEECCCCCEEEEee
Q psy15421        259 QELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHD------NRVSCLGVTEDGMAVATGS  331 (340)
Q Consensus       259 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~------~~i~~~~~s~d~~~l~s~s  331 (340)
                      +.+..+....   .+.++.+.++|++++++..++.|..+|..+++.+-.+..+.      ..+..++..++|..+++.+
T Consensus       156 ~~~w~~~~~~---~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          156 QLLNSVKLSG---TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             CEEEEEECSS---CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             CEEEEEECCC---CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            8887776542   35567889999999999999999999988888877665432      3478899999999888874

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.66  E-value=2.4e-13  Score=116.87  Aligned_cols=238  Identities=12%  Similarity=0.100  Sum_probs=160.3

Q ss_pred             CcEEEEEECCCCCEEEE-------EeCCCeEEEEEccCCCCceEEEEe--ecCCCcceEEEEEcCC-CeEEEEeCCCeEE
Q psy15421         98 SWVMTCAYAPSGSFVAC-------GGLDNICSIYSLKTREGNVRVSRE--LPGHTGYLSCCRFLDD-NQIVTSSGDMSCA  167 (340)
Q Consensus        98 ~~i~~v~~~~~~~~l~~-------~~~d~~v~i~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~  167 (340)
                      .....++|++++.++++       +..++.|.+|+..++.  ......  ..++...+..+.+.++ +.+..+.....|.
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~   95 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK--KTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC--EEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc--EEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence            34578899999988887       6778889999875543  211111  0123455677778777 7766666666899


Q ss_pred             EEECCCCceEEE-Eec----CCCCeEEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCeeeeEecCCCC
Q psy15421        168 LWDIETGQQCAS-FIG----HTGDVMSLSLAPDMRTFVSGACD---------------ASAKLWDIRDGSCKQTFPGHES  227 (340)
Q Consensus       168 iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~~sg~~d---------------g~i~~wd~~~~~~~~~~~~h~~  227 (340)
                      +||.. ++.... ...    ....+.++++.|+++++++...+               +.|..||.. ++..... .+..
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~  172 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQ  172 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEES
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCC
Confidence            99998 654322 111    11347899999999888876655               567777765 5443322 2334


Q ss_pred             CeEEEEEe----cCCCEE-EEEeCCCcEEEEeCc-CCcEE--EEee-cCCcc-cceEEEEEcCCCcEEEEEeCCCcEEEE
Q psy15421        228 DINAVTFF----PNGWAF-ATGSDDATCRLFDIR-ADQEL--AMYS-HDNII-CGITSVAFSRSGRLLLAGYDDFNCNVW  297 (340)
Q Consensus       228 ~v~~v~~~----~~~~~l-~s~s~d~~i~iwd~~-~~~~~--~~~~-~~~~~-~~i~~~~~s~~~~~l~~g~~d~~i~iw  297 (340)
                      ..+.++++    |+++.+ ++...++.|.+||.. .++..  ..+. ..... ..+..++++++|+++++...++.|.+|
T Consensus       173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~  252 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence            56889999    998654 555668899999976 33211  1111 11111 246789999999999988888899999


Q ss_pred             eCCCceeeeeeccCCcceEEEEECCCCCE-EEEeeCCCcEEecC
Q psy15421        298 DSMKTERAGILAGHDNRVSCLGVTEDGMA-VATGSWDSFLRIWN  340 (340)
Q Consensus       298 ~~~~~~~~~~~~~h~~~i~~~~~s~d~~~-l~s~s~D~~i~iW~  340 (340)
                      +..+++....+..+...+.+++|+|+|.. +++...++.|..|+
T Consensus       253 d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          253 GPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             CTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence            97767666666667788999999999994 45555567776653

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.66  E-value=1.1e-12  Score=121.60  Aligned_cols=269  Identities=11%  Similarity=0.033  Sum_probs=183.1

Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCc
Q psy15421         65 SDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTG  144 (340)
Q Consensus        65 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~  144 (340)
                      +.+..+++...+++|.++|..+++.+..+.... .+..+.|+|||+++++++.++.|.+||+......  ....++....
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~--~v~~i~~G~~  241 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--TVAEIKIGSE  241 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC--EEEEEECCSE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCc--EeEEEecCCC
Confidence            445567788889999999999999888887543 4678999999999999999999999998521212  2233433222


Q ss_pred             ceEEEEEc----CCC-eEEE-EeCCCeEEEEECCCCceEEEEec----------CCC-CeEEEEEcCCCCEE-EEEeCCC
Q psy15421        145 YLSCCRFL----DDN-QIVT-SSGDMSCALWDIETGQQCASFIG----------HTG-DVMSLSLAPDMRTF-VSGACDA  206 (340)
Q Consensus       145 ~v~~~~~~----~~~-~l~~-~~~d~~v~iwd~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~~-~sg~~dg  206 (340)
                       -..+.++    +++ .++. ...++++.++|..+.+.+..+..          |.. .+..+..++++..+ ++...+|
T Consensus       242 -P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g  320 (567)
T 1qks_A          242 -ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG  320 (567)
T ss_dssp             -EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             -CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence             3456677    355 4444 44579999999999888776542          112 57788888876654 4556679


Q ss_pred             cEEEEECCCCeee--eEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCcCCcEEEEeec-CCcc---cceEEEEEc
Q psy15421        207 SAKLWDIRDGSCK--QTFPGHESDINAVTFFPNGWAFATGS-DDATCRLFDIRADQELAMYSH-DNII---CGITSVAFS  279 (340)
Q Consensus       207 ~i~~wd~~~~~~~--~~~~~h~~~v~~v~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~-~~~~---~~i~~~~~s  279 (340)
                      +|.++|....+..  ..+. .......+.|+|++++|+++. .++.|.++|..+.+.+..... ....   .++.  .++
T Consensus       321 ~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~--~~~  397 (567)
T 1qks_A          321 KILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN--FVH  397 (567)
T ss_dssp             EEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE--EEE
T ss_pred             eEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee--eEC
Confidence            9999998765422  2222 334567889999999887655 578999999998877665543 2211   1222  268


Q ss_pred             CC-CcEEEEEe-CCCcEEEEeCCC-------ceeeeeeccCCcceEEEEECCCCCEEEEeeC-------CCcEEecC
Q psy15421        280 RS-GRLLLAGY-DDFNCNVWDSMK-------TERAGILAGHDNRVSCLGVTEDGMAVATGSW-------DSFLRIWN  340 (340)
Q Consensus       280 ~~-~~~l~~g~-~d~~i~iw~~~~-------~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~-------D~~i~iW~  340 (340)
                      |+ +..++++. .+++|.+++..+       ++.+..+......-..+..+|++++|.....       ..+|.|+|
T Consensus       398 p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d  474 (567)
T 1qks_A          398 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD  474 (567)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred             CCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence            87 44445543 568999999876       5566666544333244678999998876552       24666653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.63  E-value=1.2e-13  Score=133.09  Aligned_cols=246  Identities=11%  Similarity=0.036  Sum_probs=161.4

Q ss_pred             ccCcEEEEEEcCCCCeEEEEeCC-----CeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCe--------
Q psy15421         54 HLAKIYAMHWGSDSRNLVSASQD-----GKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI--------  120 (340)
Q Consensus        54 h~~~v~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~--------  120 (340)
                      |...+..++|||||++|+.++.+     ..|++||+.+++.+... .+...+..++|+|| +.|+.+..++.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            43467889999999999877654     46999999998865431 11111246789999 98888876654        


Q ss_pred             ------EEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCC-----CeEEEEECCCCc-e-EEEEecCCCC
Q psy15421        121 ------CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGD-----MSCALWDIETGQ-Q-CASFIGHTGD  186 (340)
Q Consensus       121 ------v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d-----~~v~iwd~~~~~-~-~~~~~~~~~~  186 (340)
                            |.+|++.++...-........+...+....|++++ .++..+.+     ..|.+||+.++. . ...+..+...
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                  77888765432222333333444456777888876 45555433     479999998762 2 4555555555


Q ss_pred             eEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--eeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCc-CCc
Q psy15421        187 VMSLSLAPDMRTFVSGAC----DASAKLWDIRDG--SCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIR-ADQ  259 (340)
Q Consensus       187 v~~~~~~~~~~~~~sg~~----dg~i~~wd~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~-~~~  259 (340)
                      ..... .|+++.++..+.    ++.|.+||+.++  .....++.+...+..++++ ++..+++...|+..++|.+. .++
T Consensus       319 ~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~  396 (741)
T 1yr2_A          319 QWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK  396 (741)
T ss_dssp             CEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred             eEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence            54443 488888777665    355999999874  3444455555567778887 56788888999988887654 344


Q ss_pred             EEEEeecCCcccceEEEEEcCCCcEEEEE----eCCCcEEEEeCCCcee
Q psy15421        260 ELAMYSHDNIICGITSVAFSRSGRLLLAG----YDDFNCNVWDSMKTER  304 (340)
Q Consensus       260 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g----~~d~~i~iw~~~~~~~  304 (340)
                      ....+.... ...+..+.++|+++.|+..    ...++++.||..+++.
T Consensus       397 ~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          397 PAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             ceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            443332211 2347788999998866633    2347899999877653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.63  E-value=1.1e-13  Score=120.25  Aligned_cols=176  Identities=13%  Similarity=0.038  Sum_probs=130.6

Q ss_pred             CeEEEEECCCCceEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eeeEe---------cCCCCCeEEE
Q psy15421        164 MSCALWDIETGQQCASFI-GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS-CKQTF---------PGHESDINAV  232 (340)
Q Consensus       164 ~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~-~~~~~---------~~h~~~v~~v  232 (340)
                      +.|.+||..+++....+. .+...+..++++|+++++++...++.|+.||..... .+..+         .++......+
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i  148 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV  148 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence            479999999888765554 344578999999999999998899999999975432 34444         2344568999


Q ss_pred             EEec-CCCEEEEEe-CCCcEEEEeCcCCcEEEEeecC--------CcccceEEEEEcCC-CcEEEEEeCCCcEEEEeCCC
Q psy15421        233 TFFP-NGWAFATGS-DDATCRLFDIRADQELAMYSHD--------NIICGITSVAFSRS-GRLLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       233 ~~~~-~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~--------~~~~~i~~~~~s~~-~~~l~~g~~d~~i~iw~~~~  301 (340)
                      +++| ++..+++.+ .++.|++||. .++.+..+...        .....+..++++|+ +.++++...++.|++|+..+
T Consensus       149 a~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~  227 (329)
T 3fvz_A          149 AVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT  227 (329)
T ss_dssp             EECTTTCCEEEEECSSCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             EEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC
Confidence            9999 788888887 6999999994 45555544321        12234789999998 88888888999999999877


Q ss_pred             ceeeeee--ccCCcceEEEEECC------CCCEEEEeeCCCcEEecC
Q psy15421        302 TERAGIL--AGHDNRVSCLGVTE------DGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       302 ~~~~~~~--~~h~~~i~~~~~s~------d~~~l~s~s~D~~i~iW~  340 (340)
                      ++.+..+  ..+...+..++|+|      +|..+++.+.+..|++||
T Consensus       228 G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~  274 (329)
T 3fvz_A          228 KEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMN  274 (329)
T ss_dssp             CCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEE
T ss_pred             CcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEE
Confidence            8777766  35667889999999      443333334445777774

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.62  E-value=2.9e-12  Score=114.54  Aligned_cols=239  Identities=10%  Similarity=0.030  Sum_probs=163.7

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCC--eEEEEEccCCCCce
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDN--ICSIYSLKTREGNV  133 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~~  133 (340)
                      .....++|+++++++++...++.|++||..++........... .. ++|++++..|+.+..++  .+.+++...... .
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P  207 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence            4678999999999888888889999999987665544443222 33 88999999998888765  677777654322 1


Q ss_pred             EEEEeecC-CCcceEEEEEcC-CCeEEEEeCCCeEEEEECCCCceEEE----EecCCCCe-E-EEEEcCC-CCEEEEEeC
Q psy15421        134 RVSRELPG-HTGYLSCCRFLD-DNQIVTSSGDMSCALWDIETGQQCAS----FIGHTGDV-M-SLSLAPD-MRTFVSGAC  204 (340)
Q Consensus       134 ~~~~~~~~-~~~~v~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~----~~~~~~~v-~-~~~~~~~-~~~~~sg~~  204 (340)
                      .....+.. .......+.+.+ ++.|..+..++.|..||+.++.....    ..+..... . .++|+|+ +.++++-..
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence            11111112 334445566766 67777777788999999987653222    11222222 3 9999995 666667777


Q ss_pred             CCcEEEEECCCCeeeeEecCCC---------------CCeEEEEEecCCCEEEEEe-CCCcEEEEeCcCCcEEEEeecC-
Q psy15421        205 DASAKLWDIRDGSCKQTFPGHE---------------SDINAVTFFPNGWAFATGS-DDATCRLFDIRADQELAMYSHD-  267 (340)
Q Consensus       205 dg~i~~wd~~~~~~~~~~~~h~---------------~~v~~v~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~-  267 (340)
                      ++.|+.|+....  ...+.++.               .....++++|+|..+++-+ .++.|+.||...+......... 
T Consensus       288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~  365 (409)
T 3hrp_A          288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVD  365 (409)
T ss_dssp             TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTT
T ss_pred             CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCC
Confidence            899999997643  22332221               3478999999999888888 8999999997666543333221 


Q ss_pred             -----------CcccceEEEEEcCCCcEEEEEeCCCcEEEEeC
Q psy15421        268 -----------NIICGITSVAFSRSGRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       268 -----------~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~  299 (340)
                                 ........++++|++.++++-..++.|+.+.+
T Consensus       366 ~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          366 VASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             CBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence                       01234789999999999988888888887764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.62  E-value=1.6e-12  Score=111.73  Aligned_cols=242  Identities=8%  Similarity=0.053  Sum_probs=159.3

Q ss_pred             cCccCcEEEEEEcCCCCeEEE-------EeCCCeEEEEeCCCCCeeEEee----CCCCcEEEEEECCC-CCEEEEEeCCC
Q psy15421         52 RGHLAKIYAMHWGSDSRNLVS-------ASQDGKLIVWDSYTTNKVHAIP----LRSSWVMTCAYAPS-GSFVACGGLDN  119 (340)
Q Consensus        52 ~~h~~~v~~~~~s~~~~~l~s-------~~~d~~i~iwd~~~~~~~~~~~----~~~~~i~~v~~~~~-~~~l~~~~~d~  119 (340)
                      .+......+++|++++.++++       +..++.|.+||..+++......    .+...+..++++++ ++++++. ..+
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~   92 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRL   92 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTT
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCC
Confidence            444456689999999988887       5778999999987776532221    13356889999999 7655544 344


Q ss_pred             eEEEEEccCCCCceEEE-Eee-cC-CCcceEEEEEcCCCeEEEEe-CC---------------CeEEEEECCCCceEEEE
Q psy15421        120 ICSIYSLKTREGNVRVS-REL-PG-HTGYLSCCRFLDDNQIVTSS-GD---------------MSCALWDIETGQQCASF  180 (340)
Q Consensus       120 ~v~i~~~~~~~~~~~~~-~~~-~~-~~~~v~~~~~~~~~~l~~~~-~d---------------~~v~iwd~~~~~~~~~~  180 (340)
                      .+.+|+.. +.  .... ... .. ....+..+.+.+++.+..+. .+               +.|..++.. ++. ..+
T Consensus        93 ~l~~~d~~-g~--~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~  167 (314)
T 1pjx_A           93 GLLVVQTD-GT--FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-IQV  167 (314)
T ss_dssp             EEEEEETT-SC--EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-EEE
T ss_pred             CEEEEeCC-CC--EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE-EEe
Confidence            67888875 32  2111 111 11 12346677777666554444 33               467777765 443 333


Q ss_pred             ecCCCCeEEEEEc----CCCCEEE-EEeCCCcEEEEECC-CCe-----eeeEecCCC-CCeEEEEEecCCCEEEEEeCCC
Q psy15421        181 IGHTGDVMSLSLA----PDMRTFV-SGACDASAKLWDIR-DGS-----CKQTFPGHE-SDINAVTFFPNGWAFATGSDDA  248 (340)
Q Consensus       181 ~~~~~~v~~~~~~----~~~~~~~-sg~~dg~i~~wd~~-~~~-----~~~~~~~h~-~~v~~v~~~~~~~~l~s~s~d~  248 (340)
                      ..+......++++    |+++.++ +...++.|.+||.+ +++     ....+.++. ..+..++++++|..+++...++
T Consensus       168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~  247 (314)
T 1pjx_A          168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence            3344457889999    9986554 55578999999976 443     223344444 5678899999999998888889


Q ss_pred             cEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEE-EEeCCCcEEEEeCCC
Q psy15421        249 TCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLL-AGYDDFNCNVWDSMK  301 (340)
Q Consensus       249 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~g~~d~~i~iw~~~~  301 (340)
                      .|..||..+++.+..+....  ..+.+++|+|+++.|. +...++.|..|+...
T Consensus       248 ~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          248 HIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            99999987555444333221  3478999999999555 445567899998653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.61  E-value=1.8e-11  Score=104.14  Aligned_cols=236  Identities=9%  Similarity=0.005  Sum_probs=165.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEE-eCCCeEEEEECCCC
Q psy15421         96 RSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTS-SGDMSCALWDIETG  174 (340)
Q Consensus        96 ~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~-~~d~~v~iwd~~~~  174 (340)
                      ....+..+++.++++++++...++.|.+|+.. +  ... ...++.....+..+.+.+++.+..+ ..++.|..+|.. +
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~--~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G--RIK-EFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S--CEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C--ceE-EEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence            34567889999999988877778899999865 2  222 1223333355666777666655444 447889999988 5


Q ss_pred             ceEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeee-EecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q psy15421        175 QQCAS-FIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQ-TFPGHESDINAVTFFPNGWAFATGSDDATCRL  252 (340)
Q Consensus       175 ~~~~~-~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~i  252 (340)
                      +.... .......+..+++.++++++++...++.|..+|.. ++... .+......+.++++.++++.+++...++.|..
T Consensus        93 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  171 (300)
T 2qc5_A           93 GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR  171 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence            54221 12234568899999999988887778999999987 55432 23334567899999999997777777889999


Q ss_pred             EeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeee-eeccCCcceEEEEECCCCCEEEEee
Q psy15421        253 FDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAG-ILAGHDNRVSCLGVTEDGMAVATGS  331 (340)
Q Consensus       253 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~-~~~~h~~~i~~~~~s~d~~~l~s~s  331 (340)
                      +|. .++... +........+..++++++|.++++...++.|..|+. +++... .+..+...+.+++++++|..+++..
T Consensus       172 ~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~  248 (300)
T 2qc5_A          172 ITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW  248 (300)
T ss_dssp             ECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred             ECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc
Confidence            998 443332 322222235789999999988887777788999997 444332 2334556789999999999777776


Q ss_pred             CCCcEEecC
Q psy15421        332 WDSFLRIWN  340 (340)
Q Consensus       332 ~D~~i~iW~  340 (340)
                      .++.|..+|
T Consensus       249 ~~~~i~~~~  257 (300)
T 2qc5_A          249 GANQIGRIT  257 (300)
T ss_dssp             TTTEEEEEC
T ss_pred             CCCeEEEEC
Confidence            678887764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.61  E-value=1.9e-11  Score=107.77  Aligned_cols=266  Identities=14%  Similarity=0.045  Sum_probs=171.1

Q ss_pred             cCCCCeEEEEeC--CC---eEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEe----------CCCeEEEEEccC
Q psy15421         64 GSDSRNLVSASQ--DG---KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGG----------LDNICSIYSLKT  128 (340)
Q Consensus        64 s~~~~~l~s~~~--d~---~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~----------~d~~v~i~~~~~  128 (340)
                      .|+++++.....  ..   +|.++|..+++.+..++....+  .++++||+++++.+.          .++.+.+||..+
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t  106 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT  106 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence            356666555543  22   8899999999888777765443  889999999998886          367899999865


Q ss_pred             CCCceEEEEeec--CC---CcceEEEEEcCCC-eEEEEeC--CCeEEEEECCCCceEEE-EecCCCCeEEEEEcCCC-CE
Q psy15421        129 REGNVRVSRELP--GH---TGYLSCCRFLDDN-QIVTSSG--DMSCALWDIETGQQCAS-FIGHTGDVMSLSLAPDM-RT  198 (340)
Q Consensus       129 ~~~~~~~~~~~~--~~---~~~v~~~~~~~~~-~l~~~~~--d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~  198 (340)
                      .+....+  .+.  .+   ...-..+.+++++ .++.+..  +.+|.++| .+++.+.. +. ...   ++.+.|++ +.
T Consensus       107 ~~~~~~i--~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-~~~---~~~~~~~~~~~  179 (373)
T 2mad_H          107 FLPIADI--ELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-SPT---CYHIHPGAPST  179 (373)
T ss_pred             CcEEEEE--ECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC-CCc---eEEEEeCCCce
Confidence            4311111  111  00   0112245677665 4555543  57899999 99887766 43 222   24455655 45


Q ss_pred             EEEEeCCCcEEEEECCCCeeeeEec-----CCCCCe-EEEEEecCCCEEEEEeCCCcEEEEeCcCCcE--EEEeecCC--
Q psy15421        199 FVSGACDASAKLWDIRDGSCKQTFP-----GHESDI-NAVTFFPNGWAFATGSDDATCRLFDIRADQE--LAMYSHDN--  268 (340)
Q Consensus       199 ~~sg~~dg~i~~wd~~~~~~~~~~~-----~h~~~v-~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~~~~--  268 (340)
                      +++.+.||.+.++|. +++......     ....++ ....+.+++..++..+.++.+.+.|+.....  +..+....  
T Consensus       180 ~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~  258 (373)
T 2mad_H          180 FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGG  258 (373)
T ss_pred             EEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCc
Confidence            667788999999999 776553221     111221 2345666655544444678999999865422  12221100  


Q ss_pred             ------cccceEEEEEcCCCcEEEEEeC----------CCcEEEEeCCCceeeeeeccCCcceEEEEECCCCC-EEEEee
Q psy15421        269 ------IICGITSVAFSRSGRLLLAGYD----------DFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGM-AVATGS  331 (340)
Q Consensus       269 ------~~~~i~~~~~s~~~~~l~~g~~----------d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~-~l~s~s  331 (340)
                            ...+...++++|+++.+.++..          .+.|.++|..+.+.+..+. -......++|+|||+ +++++.
T Consensus       259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEc
Confidence                  0122344789999988877654          3579999999998888774 334678999999999 777777


Q ss_pred             -CCCcEEecC
Q psy15421        332 -WDSFLRIWN  340 (340)
Q Consensus       332 -~D~~i~iW~  340 (340)
                       .++.|.|+|
T Consensus       338 ~~~~~V~ViD  347 (373)
T 2mad_H          338 AGTEVLHIYD  347 (373)
T ss_pred             CCCCeEEEEE
Confidence             489999886

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.61  E-value=2.2e-13  Score=131.23  Aligned_cols=267  Identities=13%  Similarity=0.019  Sum_probs=165.2

Q ss_pred             CCCCeEEEEeCCCe---EEEEe--CC---CCCeeEEe------eCCCCcEEEEEECCCCCEEEEEeCC-----CeEEEEE
Q psy15421         65 SDSRNLVSASQDGK---LIVWD--SY---TTNKVHAI------PLRSSWVMTCAYAPSGSFVACGGLD-----NICSIYS  125 (340)
Q Consensus        65 ~~~~~l~s~~~d~~---i~iwd--~~---~~~~~~~~------~~~~~~i~~v~~~~~~~~l~~~~~d-----~~v~i~~  125 (340)
                      |+|++++-...++.   -.+|-  ..   .++....+      ..+...+..++|||||++|+.+..+     ..|++||
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            67777665554433   44553  33   23322211      1222357788999999999887654     4699999


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCC--------------eEEEEECCCCce--EEEEec--CCCCe
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDM--------------SCALWDIETGQQ--CASFIG--HTGDV  187 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~--------------~v~iwd~~~~~~--~~~~~~--~~~~v  187 (340)
                      +.+++..   ....  +...+..+.|+++..|+.+..+.              .|.+|++.+++.  ...+..  +...+
T Consensus       196 l~tg~~~---~~~~--~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~  270 (741)
T 1yr2_A          196 VADGKPL---ADEL--KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRG  270 (741)
T ss_dssp             TTTCCEE---EEEE--EEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred             CCCCCCC---CccC--CCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEE
Confidence            9775421   1111  11112345677665566666544              388999987652  222222  33358


Q ss_pred             EEEEEcCCCCEEEEEeCC-----CcEEEEECCCC--eeeeEecCCCCCeEEEEEecCCCEEEEEeCC----CcEEEEeCc
Q psy15421        188 MSLSLAPDMRTFVSGACD-----ASAKLWDIRDG--SCKQTFPGHESDINAVTFFPNGWAFATGSDD----ATCRLFDIR  256 (340)
Q Consensus       188 ~~~~~~~~~~~~~sg~~d-----g~i~~wd~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d----~~i~iwd~~  256 (340)
                      ..+.|+||+++++..+.+     ..|.+||+.++  .+...+..+...+... ++|+|..|+..+.+    +.|.+||+.
T Consensus       271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~  349 (741)
T 1yr2_A          271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLS  349 (741)
T ss_dssp             EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECS
T ss_pred             EEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC
Confidence            899999999988876654     38999999876  3134454455455444 35888888877764    459999987


Q ss_pred             CC--cEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCC-Cceeeeeecc-CCcceEEEEECCCCCEEE----
Q psy15421        257 AD--QELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM-KTERAGILAG-HDNRVSCLGVTEDGMAVA----  328 (340)
Q Consensus       257 ~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~-~~~~~~~~~~-h~~~i~~~~~s~d~~~l~----  328 (340)
                      +.  .....+.+.  ...+..+.++ ++.++++...|+..++|... ++.....+.. +.+.|..++++||+..|+    
T Consensus       350 ~~~~~~~~l~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s  426 (741)
T 1yr2_A          350 GSTPRFDTVVPES--KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFS  426 (741)
T ss_dssp             SSSCEEEEEECCC--SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEE
T ss_pred             CCccccEEEecCC--CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEc
Confidence            64  222223222  1236677777 67788889999988877543 3444555544 467789999999987665    


Q ss_pred             EeeCCCcEEecC
Q psy15421        329 TGSWDSFLRIWN  340 (340)
Q Consensus       329 s~s~D~~i~iW~  340 (340)
                      +....++|++||
T Consensus       427 s~~~P~~i~~~d  438 (741)
T 1yr2_A          427 SFTQPATVLALD  438 (741)
T ss_dssp             ETTEEEEEEEEE
T ss_pred             CCCCCCEEEEEE
Confidence            333346777775

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.58  E-value=1.1e-13  Score=121.66  Aligned_cols=172  Identities=11%  Similarity=0.029  Sum_probs=129.2

Q ss_pred             ceEEEEEcCC-CeEEEEeCCCeEEEEECCCCc----------eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy15421        145 YLSCCRFLDD-NQIVTSSGDMSCALWDIETGQ----------QCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDI  213 (340)
Q Consensus       145 ~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~  213 (340)
                      .++.+.+++. +.+++|+.+ .+.+|+++...          .......+.. |..++|  +++.++++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            3555666554 566666666 56669865432          1112334666 999999  88899888 8899999999


Q ss_pred             CCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCc
Q psy15421        214 RDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN  293 (340)
Q Consensus       214 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~  293 (340)
                      ++.......+.|..++.++.+.+.  .+++++.||.+.+||+...+...      ....|++++|||+|  ++.|..||+
T Consensus       114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~------~~~~Vs~v~WSpkG--~~vg~~dg~  183 (388)
T 1xip_A          114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ------LAQNVTSFDVTNSQ--LAVLLKDRS  183 (388)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE------EEESEEEEEECSSE--EEEEETTSC
T ss_pred             hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc------ccCCceEEEEcCCc--eEEEEcCCc
Confidence            876655566677888888776654  49999999999999998766543      22369999999999  688999999


Q ss_pred             EEEEeCCCcee--eeee------c---cCCcceEEEEECCCCCEEEEee
Q psy15421        294 CNVWDSMKTER--AGIL------A---GHDNRVSCLGVTEDGMAVATGS  331 (340)
Q Consensus       294 i~iw~~~~~~~--~~~~------~---~h~~~i~~~~~s~d~~~l~s~s  331 (340)
                      +++|+....+.  ..++      .   +|...|.++.|.+++.++++-+
T Consensus       184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            99998776664  4444      2   4788999999999999988743

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.58  E-value=6.9e-11  Score=104.23  Aligned_cols=246  Identities=11%  Similarity=0.038  Sum_probs=162.6

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEe----------CCCeEEEEeCCCCCeeEEeeCC-------CCcEEEEEECCCCCE
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSAS----------QDGKLIVWDSYTTNKVHAIPLR-------SSWVMTCAYAPSGSF  111 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~-------~~~i~~v~~~~~~~~  111 (340)
                      .++..-..+  .++++||++++..+.          .++.|.+||..+.+.+..+...       ......++++|||++
T Consensus        61 ~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~  138 (373)
T 2mad_H           61 GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD  138 (373)
T ss_pred             EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCE
Confidence            344433334  899999999988775          3678999999988877766543       123457899999999


Q ss_pred             EEEEeC--CCeEEEEEccCCCCceEEEEe-ecCCCcceEEEEEcC-CCeEEEEeCCCeEEEEECCCCceEEEEe-----c
Q psy15421        112 VACGGL--DNICSIYSLKTREGNVRVSRE-LPGHTGYLSCCRFLD-DNQIVTSSGDMSCALWDIETGQQCASFI-----G  182 (340)
Q Consensus       112 l~~~~~--d~~v~i~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----~  182 (340)
                      |+.+..  ++.|.++| .+++    .... ++. ...+.  .+.. ...+++.+.|+.+.++|. +++......     .
T Consensus       139 l~v~n~~~~~~v~viD-~t~~----~~~~~i~~-~~~~~--~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~  209 (373)
T 2mad_H          139 LLFFQFAAGPAVGLVV-QGGS----SDDQLLSS-PTCYH--IHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLT  209 (373)
T ss_pred             EEEEecCCCCeEEEEE-CCCC----EEeEEcCC-CceEE--EEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccccc
Confidence            998874  47899999 7653    2222 221 11111  1222 235677788999999999 777653321     1


Q ss_pred             CCCC-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eeeEecCC----------CCCeEEEEEecCCCEEEEEeC---
Q psy15421        183 HTGD-VMSLSLAPDMRTFVSGACDASAKLWDIRDGS--CKQTFPGH----------ESDINAVTFFPNGWAFATGSD---  246 (340)
Q Consensus       183 ~~~~-v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~--~~~~~~~h----------~~~v~~v~~~~~~~~l~s~s~---  246 (340)
                      ...+ .....+.+++..++..+.++.+.+.|+..+.  ....+.-.          ......+.++|++..+.....   
T Consensus       210 ~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~  289 (373)
T 2mad_H          210 AAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS  289 (373)
T ss_pred             CCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCC
Confidence            1111 1234556665554444478899999987553  22222110          122334788999887766543   


Q ss_pred             -------CCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCc-EEEEEe-CCCcEEEEeCCCceeeeee
Q psy15421        247 -------DATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR-LLLAGY-DDFNCNVWDSMKTERAGIL  308 (340)
Q Consensus       247 -------d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~-~d~~i~iw~~~~~~~~~~~  308 (340)
                             ++.|.++|..+.+.+..+....   ....++|+|||+ +++++. .++.|.++|..+++.+..+
T Consensus       290 ~~~~~~~~~~V~VID~~t~~vv~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          290 AWKLHAAAKEVTSVTGLVGQTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             cccccCCCCeEEEEECCCCEEEEEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence                   3579999999888877664332   367899999999 677766 5899999999998887763

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.56  E-value=2.3e-11  Score=103.92  Aligned_cols=232  Identities=14%  Similarity=0.119  Sum_probs=152.2

Q ss_pred             ecCccCcEEEEEEcCCC-CeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q psy15421         51 LRGHLAKIYAMHWGSDS-RNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTR  129 (340)
Q Consensus        51 ~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~  129 (340)
                      +..+..--.+..|++++ .++++...++.|+.||..+++.. .+. ....+..++++++++++++.  ++.+.+|+..++
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g   83 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQ   83 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTT
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCC
Confidence            44444455688899864 56667777899999998876642 232 24568899999999966543  567888887653


Q ss_pred             CCceEEEEeecC--CCcceEEEEEcCCCeEEEEeC----------CCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC
Q psy15421        130 EGNVRVSRELPG--HTGYLSCCRFLDDNQIVTSSG----------DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR  197 (340)
Q Consensus       130 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~----------d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  197 (340)
                      .  .........  .......+.+.+++.+..+..          ...-.+|.+........+.........++|+|+++
T Consensus        84 ~--~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~  161 (297)
T 3g4e_A           84 S--AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHK  161 (297)
T ss_dssp             E--EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSC
T ss_pred             c--EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCC
Confidence            2  222222211  123456677777766555432          12345555543222333333445578999999998


Q ss_pred             EE-EEEeCCCcEEEEEC--CCCee-----eeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCc
Q psy15421        198 TF-VSGACDASAKLWDI--RDGSC-----KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNI  269 (340)
Q Consensus       198 ~~-~sg~~dg~i~~wd~--~~~~~-----~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~  269 (340)
                      .+ ++.+.++.|..||+  .++..     ...+..+...+..++++++|..+++....+.|..||..+++.+..+.... 
T Consensus       162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~-  240 (297)
T 3g4e_A          162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV-  240 (297)
T ss_dssp             EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS-
T ss_pred             EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC-
Confidence            65 45666899999987  45542     22233334567899999999988888888899999998777766654332 


Q ss_pred             ccceEEEEEc-CCCcEEEEEeC
Q psy15421        270 ICGITSVAFS-RSGRLLLAGYD  290 (340)
Q Consensus       270 ~~~i~~~~~s-~~~~~l~~g~~  290 (340)
                       ..+++++|. |+++.|.+.+.
T Consensus       241 -~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          241 -DKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             -SBEEEEEEESGGGCEEEEEEB
T ss_pred             -CCceEEEEeCCCCCEEEEEcC
Confidence             248899998 88887766554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.55  E-value=2.9e-13  Score=118.86  Aligned_cols=173  Identities=14%  Similarity=0.078  Sum_probs=132.9

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC-----------eeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         57 KIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN-----------KVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      .+..+++++...++++|+.++ +++|++.+..           .....+ +.. |..++|  ++++|+++ .++.+++|+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            689999999999999999985 5569754222           112333 445 999999  99999998 889999999


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                      +......    ...+.|...+..+.+...+ ++++..||.+.+||+..++...    +...|.|++|+|+|  ++.|..|
T Consensus       113 v~sl~~~----~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d  181 (388)
T 1xip_A          113 LEELSEF----RTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD  181 (388)
T ss_dssp             SSSTTCE----EEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred             chhhhcc----CccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence            9765421    1234455667777765443 8888999999999999776543    34579999999999  6789999


Q ss_pred             CcEEEEECCCCee--eeEe------c---CCCCCeEEEEEecCCCEEEEEeC
Q psy15421        206 ASAKLWDIRDGSC--KQTF------P---GHESDINAVTFFPNGWAFATGSD  246 (340)
Q Consensus       206 g~i~~wd~~~~~~--~~~~------~---~h~~~v~~v~~~~~~~~l~s~s~  246 (340)
                      |++++|+...+.+  .+++      .   +|...|.+|.|.+++.++++-..
T Consensus       182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~  233 (388)
T 1xip_A          182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN  233 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred             CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence            9999999887775  5555      2   37788999999999988887544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.53  E-value=6.9e-11  Score=100.98  Aligned_cols=226  Identities=10%  Similarity=0.030  Sum_probs=149.2

Q ss_pred             CcEEEEEECCCC-CEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCce
Q psy15421         98 SWVMTCAYAPSG-SFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQ  176 (340)
Q Consensus        98 ~~i~~v~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~  176 (340)
                      ...-...|+|++ .++++...++.|..|+..++.  .. ...   ....+.++.+.+++.++.+. +..|.+||..+++.
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~--~~-~~~---~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ--VQ-RVT---MDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSA   85 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--EE-EEE---CSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEE
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCc--EE-EEe---CCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcE
Confidence            344567788854 455666677899999986543  11 111   23457777887777766665 67899999987764


Q ss_pred             EEEEecC----CCCeEEEEEcCCCCEEEEEeCC---------CcEEEEECCC-CeeeeEecCCCCCeEEEEEecCCCEE-
Q psy15421        177 CASFIGH----TGDVMSLSLAPDMRTFVSGACD---------ASAKLWDIRD-GSCKQTFPGHESDINAVTFFPNGWAF-  241 (340)
Q Consensus       177 ~~~~~~~----~~~v~~~~~~~~~~~~~sg~~d---------g~i~~wd~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l-  241 (340)
                      .......    ...+..++++|+++++++...+         ..-.+|.+.. ++... +..+....+.++|+|+++.+ 
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~ly  164 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFY  164 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEE
T ss_pred             EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEE
Confidence            3222211    2247889999999977754322         3345555442 33322 22233456899999999865 


Q ss_pred             EEEeCCCcEEEEeCc--CCcEE--EEee-cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceE
Q psy15421        242 ATGSDDATCRLFDIR--ADQEL--AMYS-HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVS  316 (340)
Q Consensus       242 ~s~s~d~~i~iwd~~--~~~~~--~~~~-~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~  316 (340)
                      ++.+.++.|..||+.  ++...  ..+. .......+..++++++|++.++...++.|..|+..+++.+..+..+...++
T Consensus       165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t  244 (297)
T 3g4e_A          165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTT  244 (297)
T ss_dssp             EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred             EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCce
Confidence            556667899999873  33221  1111 111123467899999999888888888999999888888888877778899


Q ss_pred             EEEEC-CCCCEEEEee
Q psy15421        317 CLGVT-EDGMAVATGS  331 (340)
Q Consensus       317 ~~~~s-~d~~~l~s~s  331 (340)
                      +++|+ ||+..|..++
T Consensus       245 ~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          245 SCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EEEEESGGGCEEEEEE
T ss_pred             EEEEeCCCCCEEEEEc
Confidence            99998 8887654333

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.53  E-value=3.1e-11  Score=107.86  Aligned_cols=233  Identities=9%  Similarity=0.093  Sum_probs=157.9

Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCC--eEEEEECCCCc
Q psy15421         99 WVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDM--SCALWDIETGQ  175 (340)
Q Consensus        99 ~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~--~v~iwd~~~~~  175 (340)
                      ....++++++++++++...++.|++|+...+.  ..  ...... .... +.+.+++ .++.+..++  .|..++...+.
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~--~~--~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK--VT--TVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTE--EE--EEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCE--EE--EeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence            46789999999988877778999999986432  11  111111 1122 5566654 566666655  78899987665


Q ss_pred             eEEEE---ec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeE----ecCCCCCe--EEEEEec-CCCEEEEE
Q psy15421        176 QCASF---IG-HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQT----FPGHESDI--NAVTFFP-NGWAFATG  244 (340)
Q Consensus       176 ~~~~~---~~-~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~----~~~h~~~v--~~v~~~~-~~~~l~s~  244 (340)
                      ....+   .. ....+.+++++|+...++.+..++.|..||...+.....    ..++...-  +.++|+| ++..+++-
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d  285 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD  285 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence            43333   12 445678899999555555567789999999987653322    22222222  3899999 47777777


Q ss_pred             eCCCcEEEEeCcCCcEEEEeecC------------CcccceEEEEEcCCCcEEEEEe-CCCcEEEEeCCCceeeeeeccC
Q psy15421        245 SDDATCRLFDIRADQELAMYSHD------------NIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMKTERAGILAGH  311 (340)
Q Consensus       245 s~d~~i~iwd~~~~~~~~~~~~~------------~~~~~i~~~~~s~~~~~l~~g~-~d~~i~iw~~~~~~~~~~~~~h  311 (340)
                      ..++.|+.|+.... ........            ........++++|+|+++++-. .++.|+.|+..++.. ..+.++
T Consensus       286 ~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~  363 (409)
T 3hrp_A          286 QNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQ  363 (409)
T ss_dssp             TTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEEC
T ss_pred             CCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCC
Confidence            78899999997643 22222221            0122478999999999888888 899999999766653 334444


Q ss_pred             ---------------CcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        312 ---------------DNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       312 ---------------~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                                     ......++++++|.++++-..+++|+.+
T Consensus       364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i  406 (409)
T 3hrp_A          364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY  406 (409)
T ss_dssp             TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred             CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence                           2457899999999999998888888764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.52  E-value=3.4e-11  Score=105.37  Aligned_cols=252  Identities=15%  Similarity=0.111  Sum_probs=165.0

Q ss_pred             EEEEcCCCCeEEEEe----------CCCeEEEEeCCCCCeeEEeeCCC-------CcEEEEEECCCCCEEEEEeC--CCe
Q psy15421         60 AMHWGSDSRNLVSAS----------QDGKLIVWDSYTTNKVHAIPLRS-------SWVMTCAYAPSGSFVACGGL--DNI  120 (340)
Q Consensus        60 ~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~-------~~i~~v~~~~~~~~l~~~~~--d~~  120 (340)
                      .++++||++++..+.          .+++|.+||..+.+.+..+....       .....++|+|||++++.+..  ++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            399999999887665          36789999999999887775422       13446789999999988864  689


Q ss_pred             EEEEEccCCCCceEEEEeecCCCcceEEEEEcC-CCeEEEEeCCCeEEEEECCC-CceEEEEecCC----CCeE-EEEEc
Q psy15421        121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD-DNQIVTSSGDMSCALWDIET-GQQCASFIGHT----GDVM-SLSLA  193 (340)
Q Consensus       121 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~----~~v~-~~~~~  193 (340)
                      |.++|+.+.+    ...+++... .  ...+.. ...+++.+.||.+.+.++.. ++.......+.    .++. ...|.
T Consensus       162 VsVID~~t~~----vv~tI~v~g-~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~  234 (386)
T 3sjl_D          162 VGVVDLEGKA----FKRMLDVPD-C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS  234 (386)
T ss_dssp             EEEEETTTTE----EEEEEECCS-E--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE
T ss_pred             EEEEECCCCc----EEEEEECCC-c--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeE
Confidence            9999997753    233332111 1  112222 34677888999999999976 55432211111    1221 23553


Q ss_pred             -CCCCEEEEEeCCCcEEEEECCCCee--eeEec---------C-CCCCeEEEEEecCCCEEEEEeC----------CCcE
Q psy15421        194 -PDMRTFVSGACDASAKLWDIRDGSC--KQTFP---------G-HESDINAVTFFPNGWAFATGSD----------DATC  250 (340)
Q Consensus       194 -~~~~~~~sg~~dg~i~~wd~~~~~~--~~~~~---------~-h~~~v~~v~~~~~~~~l~s~s~----------d~~i  250 (340)
                       +++++++ .+.+|+|.+.|+..+..  ...+.         + ..+....++++|++..+.....          ...|
T Consensus       235 ~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V  313 (386)
T 3sjl_D          235 QKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV  313 (386)
T ss_dssp             TTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred             cCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEE
Confidence             6775554 45689999999976542  22221         0 0122334777898877666532          2579


Q ss_pred             EEEeCcCCcEEEEeecCCcccceEEEEEcCCCc-EEEEE-eCCCcEEEEeCCCceeeeeeccCCcceEEEEECCC
Q psy15421        251 RLFDIRADQELAMYSHDNIICGITSVAFSRSGR-LLLAG-YDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTED  323 (340)
Q Consensus       251 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g-~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d  323 (340)
                      .+.|..+.+.+..+...   .++..++|+||++ +|++. ..++.|.++|..+++.+..+..- +.-+.+.+++|
T Consensus       314 ~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          314 VVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             EEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred             EEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence            99999999888766433   2477899999997 66664 45899999999999888776422 22334555665

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.51  E-value=5e-11  Score=104.31  Aligned_cols=268  Identities=16%  Similarity=0.115  Sum_probs=174.0

Q ss_pred             cCCCCeEEEEeC-----CCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEe----------CCCeEEEEEccC
Q psy15421         64 GSDSRNLVSASQ-----DGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGG----------LDNICSIYSLKT  128 (340)
Q Consensus        64 s~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~----------~d~~v~i~~~~~  128 (340)
                      .|+++.+.....     ++.|.+.|..+.+.+.+++....+ . ++++|||++++.+.          .++.|.+||..+
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t  118 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT  118 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence            478877776654     679999999999998888865555 4 99999999887775          367899999877


Q ss_pred             CCCceEEEEeecC-C----CcceEEEEEcCCCe-EEEEe-C-CCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEE
Q psy15421        129 REGNVRVSRELPG-H----TGYLSCCRFLDDNQ-IVTSS-G-DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV  200 (340)
Q Consensus       129 ~~~~~~~~~~~~~-~----~~~v~~~~~~~~~~-l~~~~-~-d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  200 (340)
                      .+....+  .++. .    ...-..+.++++++ +..+. . ++.|.++|+.+++.+.++....  + ...+....+.++
T Consensus       119 ~~v~~~I--~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~  193 (386)
T 3sjl_D          119 LLPTADI--ELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFF  193 (386)
T ss_dssp             CCEEEEE--EETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEE
T ss_pred             CeEEEEE--ECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeE
Confidence            5421111  1221 0    01122355666654 44444 2 6899999999999887774321  1 223333455777


Q ss_pred             EEeCCCcEEEEECCC-CeeeeEecCC----CCCe-EEEEEe-cCCCEEEEEeCCCcEEEEeCcCCcE--EEEee---c--
Q psy15421        201 SGACDASAKLWDIRD-GSCKQTFPGH----ESDI-NAVTFF-PNGWAFATGSDDATCRLFDIRADQE--LAMYS---H--  266 (340)
Q Consensus       201 sg~~dg~i~~wd~~~-~~~~~~~~~h----~~~v-~~v~~~-~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~---~--  266 (340)
                      +.+.||++.+.++.. ++.......+    ..++ ....|. ++|+.+. .+.+|.+++.|+.+...  ...+.   .  
T Consensus       194 ~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~  272 (386)
T 3sjl_D          194 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAE  272 (386)
T ss_dssp             EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHH
T ss_pred             EECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccc
Confidence            888899999999876 5542211111    1222 123554 6775544 55589999999975532  11111   0  


Q ss_pred             --CC-cccceEEEEEcCCCcEEEEEeC----------CCcEEEEeCCCceeeeeeccCCcceEEEEECCCCC-EEEE-ee
Q psy15421        267 --DN-IICGITSVAFSRSGRLLLAGYD----------DFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGM-AVAT-GS  331 (340)
Q Consensus       267 --~~-~~~~i~~~~~s~~~~~l~~g~~----------d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~-~l~s-~s  331 (340)
                        .. ...+...++++|+++.+.....          ..+|.+.|..+.+.+..+.- ...++.+++++|++ +|++ ..
T Consensus       273 ~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~  351 (386)
T 3sjl_D          273 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALST  351 (386)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEET
T ss_pred             ccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcC
Confidence              00 1123445788999998887653          25799999999988877642 24788999999996 6655 44


Q ss_pred             CCCcEEecC
Q psy15421        332 WDSFLRIWN  340 (340)
Q Consensus       332 ~D~~i~iW~  340 (340)
                      .++.|.++|
T Consensus       352 ~~~~VsViD  360 (386)
T 3sjl_D          352 GDKTLYIHD  360 (386)
T ss_dssp             TTTEEEEEE
T ss_pred             CCCeEEEEE
Confidence            588888875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.49  E-value=6.8e-12  Score=119.87  Aligned_cols=244  Identities=9%  Similarity=0.047  Sum_probs=157.0

Q ss_pred             CccCcEEEEEEcCCCCeEEE-----EeCCCeEEEEeCCCCCeeEE-eeCCCCcEEEEEECCCCCEEEEEeCCCe------
Q psy15421         53 GHLAKIYAMHWGSDSRNLVS-----ASQDGKLIVWDSYTTNKVHA-IPLRSSWVMTCAYAPSGSFVACGGLDNI------  120 (340)
Q Consensus        53 ~h~~~v~~~~~s~~~~~l~s-----~~~d~~i~iwd~~~~~~~~~-~~~~~~~i~~v~~~~~~~~l~~~~~d~~------  120 (340)
                      +|...+..++||||+++|+-     |+.+.+|++||+.+++.+.. +..  .....++|+ |++.|+.+..+..      
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence            45567889999999998883     33346799999999886532 211  112456899 9999988887743      


Q ss_pred             -------EEEEEccCCCCceEEEEeecC-CCcceEEEEEcCCCe-EE-EEe---CCCeEEEEECCCCc-eEEEEecCCCC
Q psy15421        121 -------CSIYSLKTREGNVRVSRELPG-HTGYLSCCRFLDDNQ-IV-TSS---GDMSCALWDIETGQ-QCASFIGHTGD  186 (340)
Q Consensus       121 -------v~i~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~-l~-~~~---~d~~v~iwd~~~~~-~~~~~~~~~~~  186 (340)
                             |.+|++.++...-........ |........++++++ ++ +..   .+..+.++|+.++. ....+..+...
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~  282 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA  282 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence                   888888765433233333333 445556677887764 33 332   23589999997764 34556666655


Q ss_pred             eEEEEEcCCCCEE-EEEeCC---CcEEEEECCCCee--eeEecCCCCCeEEEEEecCCCEEEEEeCCC---cEEEEeCcC
Q psy15421        187 VMSLSLAPDMRTF-VSGACD---ASAKLWDIRDGSC--KQTFPGHESDINAVTFFPNGWAFATGSDDA---TCRLFDIRA  257 (340)
Q Consensus       187 v~~~~~~~~~~~~-~sg~~d---g~i~~wd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~---~i~iwd~~~  257 (340)
                      .... +++++..+ +....+   +.|..+|+.++..  ...+..|...+.  .|++++.+|+....++   .|++||+..
T Consensus       283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence            5554 55555544 444443   6899999987654  245555665554  8899888877665544   688998875


Q ss_pred             CcEEEEeecCCcccceEEEEEcCCCcEEEEEeCC----CcEEEEeCCCcee
Q psy15421        258 DQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD----FNCNVWDSMKTER  304 (340)
Q Consensus       258 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d----~~i~iw~~~~~~~  304 (340)
                      .. ...+.... ...+..+.++|+++.++....+    +++..||..+++.
T Consensus       360 ~~-~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          360 KR-VREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             CE-EEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             Ce-eEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            43 33332221 1235667778888877766555    7899999766643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.48  E-value=5.8e-12  Score=110.00  Aligned_cols=260  Identities=10%  Similarity=0.038  Sum_probs=163.8

Q ss_pred             CcEEEEEEcCCCCeEEEEe--CCCeEEEEeCCCCCeeEEee-------CCCCcEEEEEECCCCCEEEEEeC-----CCeE
Q psy15421         56 AKIYAMHWGSDSRNLVSAS--QDGKLIVWDSYTTNKVHAIP-------LRSSWVMTCAYAPSGSFVACGGL-----DNIC  121 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~-------~~~~~i~~v~~~~~~~~l~~~~~-----d~~v  121 (340)
                      .....++++++++.+++..  .++.++||.+.+++ +..++       .+-..+..++++++++++++-..     +..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            6789999999999988864  23435566554443 33221       23356899999999887665433     5788


Q ss_pred             EEEEccCCCCceEEEEeec----CCCcceEEEEEcC-CCeE-EEEe---CCCeEEEEECCCCceEEEEecCCCCeE-EEE
Q psy15421        122 SIYSLKTREGNVRVSRELP----GHTGYLSCCRFLD-DNQI-VTSS---GDMSCALWDIETGQQCASFIGHTGDVM-SLS  191 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~l-~~~~---~d~~v~iwd~~~~~~~~~~~~~~~~v~-~~~  191 (340)
                      .+||+.++.  ......++    .+......+.+.+ ++.+ ++-.   .++.|.+||+.+++....+.+|..... ...
T Consensus        96 ~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~  173 (343)
T 2qe8_A           96 VAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID  173 (343)
T ss_dssp             EEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred             EEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence            999987543  11111222    1223456667764 4554 4544   578999999998876555544322110 133


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCC-cEEEEeCc---CCc--------
Q psy15421        192 LAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDA-TCRLFDIR---ADQ--------  259 (340)
Q Consensus       192 ~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~-~i~iwd~~---~~~--------  259 (340)
                      +.+++..+.+.+.+|.++.|.              ..++.++|+|+++.|+.+..++ .+..++..   ...        
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  239 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS  239 (343)
T ss_dssp             CEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred             eeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence            445666676777788776653              1367899999998888777666 44444422   100        


Q ss_pred             EEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeec-cCCcceEEEEECCCCCEEEEeeCCCc
Q psy15421        260 ELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA-GHDNRVSCLGVTEDGMAVATGSWDSF  335 (340)
Q Consensus       260 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~-~h~~~i~~~~~s~d~~~l~s~s~D~~  335 (340)
                      .+.......   ....++++++|.++++...++.|.+|+..+++...... .+.....+++|.++|.++++.+..+.
T Consensus       240 ~~~~~g~~g---~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~  313 (343)
T 2qe8_A          240 KIERYSEKP---ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHH  313 (343)
T ss_dssp             TCEEEEECC---SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGG
T ss_pred             ceEecccCC---CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccc
Confidence            001111111   24568999999999999999999999974555433222 23456899999999998888775443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.47  E-value=5.2e-11  Score=102.15  Aligned_cols=234  Identities=13%  Similarity=0.124  Sum_probs=151.6

Q ss_pred             EEecCccCcEEEEEEcCCCC-eEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         49 RTLRGHLAKIYAMHWGSDSR-NLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      ..+..+........|+++++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+..
T Consensus        38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            34445556678899999998 6677778899999997 444 34444455678899999999977766666788888864


Q ss_pred             CCCCceEEEE-eecCC-CcceEEEEEcCCCeEEE-----EeC-------------CCeEEEEECCCCceEEEEecCCCCe
Q psy15421        128 TREGNVRVSR-ELPGH-TGYLSCCRFLDDNQIVT-----SSG-------------DMSCALWDIETGQQCASFIGHTGDV  187 (340)
Q Consensus       128 ~~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~l~~-----~~~-------------d~~v~iwd~~~~~~~~~~~~~~~~v  187 (340)
                         +...... ...+. ...+..+.+.+++.+..     +..             .+.|..+|..+++.....  .....
T Consensus       116 ---g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p  190 (305)
T 3dr2_A          116 ---GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP  190 (305)
T ss_dssp             ---SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred             ---CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence               2222211 11111 12234566666665544     221             246777777666543322  33457


Q ss_pred             EEEEEcCCCCEEEEEeCC------CcEEEEECCCCee--eeEe-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCC
Q psy15421        188 MSLSLAPDMRTFVSGACD------ASAKLWDIRDGSC--KQTF-PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD  258 (340)
Q Consensus       188 ~~~~~~~~~~~~~sg~~d------g~i~~wd~~~~~~--~~~~-~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  258 (340)
                      ..++|+|+++.++.+...      +.|..|++..+..  ...+ .........++++++|..+++. .+ .|.+|+.. +
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~-g  267 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSD-G  267 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECTT-S
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECCC-C
Confidence            889999999977766554      7899999875431  1111 1123345678999999855554 44 49999984 4


Q ss_pred             cEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEE
Q psy15421        259 QELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCN  295 (340)
Q Consensus       259 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~  295 (340)
                      +.+..+....   .+.+++|+|+++.|..++.++..+
T Consensus       268 ~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          268 QLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             CEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             CEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            4555444332   378899999999888888775433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.46  E-value=5.1e-11  Score=106.04  Aligned_cols=267  Identities=17%  Similarity=0.092  Sum_probs=173.5

Q ss_pred             CCCCeEEEEeC-C----CeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEe----------CCCeEEEEEccCC
Q psy15421         65 SDSRNLVSASQ-D----GKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGG----------LDNICSIYSLKTR  129 (340)
Q Consensus        65 ~~~~~l~s~~~-d----~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~----------~d~~v~i~~~~~~  129 (340)
                      ++++.+..... +    +.|.+.|..+.+.+..++....+  .++++||+++++.+.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            45555444433 3    79999999999999888876665  799999999888876          3678999998765


Q ss_pred             CCceEEEEeecCC-----CcceEEEEEcCCC-eEEEEeC--CCeEEEEECCCCceEEEEecCCCCeEEEEEcCCC-CEEE
Q psy15421        130 EGNVRVSRELPGH-----TGYLSCCRFLDDN-QIVTSSG--DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDM-RTFV  200 (340)
Q Consensus       130 ~~~~~~~~~~~~~-----~~~v~~~~~~~~~-~l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~  200 (340)
                      +....  ..+.+.     ...-..+.+++++ +++.+..  ++.|.+.|+.+++.+..+..-.  .  ....|++ ..++
T Consensus       160 ~vv~~--I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v  233 (426)
T 3c75_H          160 LPIAD--IELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFY  233 (426)
T ss_dssp             CEEEE--EEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEE
T ss_pred             cEEEE--EECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEE
Confidence            42111  112200     0111234566665 4555443  6789999999998877765321  1  2334433 5667


Q ss_pred             EEeCCCcEEEEECCCCeeeeE----ecCCCCCe-EEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEE--EeecC---C--
Q psy15421        201 SGACDASAKLWDIRDGSCKQT----FPGHESDI-NAVTFFPNGWAFATGSDDATCRLFDIRADQELA--MYSHD---N--  268 (340)
Q Consensus       201 sg~~dg~i~~wd~~~~~~~~~----~~~h~~~v-~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~~---~--  268 (340)
                      +.+.||++.+.+..+++....    +.....++ ..+.+.+++..++..+..+.+.+.|........  .+...   .  
T Consensus       234 ~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~  313 (426)
T 3c75_H          234 MNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERA  313 (426)
T ss_dssp             EEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGG
T ss_pred             EEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccc
Confidence            777888888888865554321    21111221 235678888877777788999999986543221  11100   0  


Q ss_pred             ---cccceEEEEEcCCCcEEEEEeC----------CCcEEEEeCCCceeeeeeccCCcceEEEEECCCCC-EEEEee-CC
Q psy15421        269 ---IICGITSVAFSRSGRLLLAGYD----------DFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGM-AVATGS-WD  333 (340)
Q Consensus       269 ---~~~~i~~~~~s~~~~~l~~g~~----------d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~-~l~s~s-~D  333 (340)
                         ...+...++++|+++.+.+...          .+.|.++|..+.+.+..+.-- .....++|+|||+ ++++.- .+
T Consensus       314 ~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s  392 (426)
T 3c75_H          314 DDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGT  392 (426)
T ss_dssp             GTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTT
T ss_pred             cccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCC
Confidence               0112223689999887776543          347999999999988877532 3578899999999 888777 58


Q ss_pred             CcEEecC
Q psy15421        334 SFLRIWN  340 (340)
Q Consensus       334 ~~i~iW~  340 (340)
                      +.|.|+|
T Consensus       393 ~~VsVID  399 (426)
T 3c75_H          393 QTLHIYD  399 (426)
T ss_dssp             TEEEEEE
T ss_pred             CeEEEEE
Confidence            9998875

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.46  E-value=4.4e-10  Score=97.31  Aligned_cols=223  Identities=11%  Similarity=-0.002  Sum_probs=144.3

Q ss_pred             cEEEEEEcCCC-CeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEE
Q psy15421         57 KIYAMHWGSDS-RNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV  135 (340)
Q Consensus        57 ~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  135 (340)
                      -..+..|+|++ ..+++...++.|..||..+++.. .+. ....+.+++++++++++++. . ..+.+|+..++.  ...
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~--~~~  123 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGV--LTL  123 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCC--EEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCc--EEE
Confidence            45678899975 45666667899999998776532 232 23568899999999987764 3 447888876543  222


Q ss_pred             EEeecC--CCcceEEEEEcCCCeEEEEeC-------CCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEE-EEeCC
Q psy15421        136 SRELPG--HTGYLSCCRFLDDNQIVTSSG-------DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV-SGACD  205 (340)
Q Consensus       136 ~~~~~~--~~~~v~~~~~~~~~~l~~~~~-------d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-sg~~d  205 (340)
                      ......  ....+..+.+.+++.+..++.       .+.|..++  +++ ...+.........++|+|+++.++ +.+.+
T Consensus       124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK-VTKLFADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE-EEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred             EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc-EEEeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence            211111  123566777777766554442       23455555  443 333333334578999999998664 45567


Q ss_pred             CcEEEEECC--CC-ee-----eeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEE
Q psy15421        206 ASAKLWDIR--DG-SC-----KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVA  277 (340)
Q Consensus       206 g~i~~wd~~--~~-~~-----~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  277 (340)
                      +.|.+||+.  ++ ..     ...+......+..++++++|.++++...++.|..||. +++.+..+....  ..+++++
T Consensus       201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~--~~~~~~a  277 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG--KQTTCPA  277 (326)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC--SBEEEEE
T ss_pred             CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC--CCcEEEE
Confidence            899999986  55 32     2233334455788999999988888777789999998 455544443322  2488999


Q ss_pred             Ec-CCCcEEEEEeCC
Q psy15421        278 FS-RSGRLLLAGYDD  291 (340)
Q Consensus       278 ~s-~~~~~l~~g~~d  291 (340)
                      |+ |++..|.+++..
T Consensus       278 f~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          278 FIGPDASRLLVTSAR  292 (326)
T ss_dssp             EESTTSCEEEEEEBC
T ss_pred             EecCCCCEEEEEecC
Confidence            98 888877665543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.45  E-value=6.2e-11  Score=105.48  Aligned_cols=240  Identities=12%  Similarity=0.062  Sum_probs=162.1

Q ss_pred             EEEEcCCCCeEEEEe----------CCCeEEEEeCCCCCeeEEeeCC-------CCcEEEEEECCCCCEEEEEeC--CCe
Q psy15421         60 AMHWGSDSRNLVSAS----------QDGKLIVWDSYTTNKVHAIPLR-------SSWVMTCAYAPSGSFVACGGL--DNI  120 (340)
Q Consensus        60 ~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~-------~~~i~~v~~~~~~~~l~~~~~--d~~  120 (340)
                      .+.++||++++..+.          .++.|.++|..+.+.+..+...       ......+.++|||++++.+..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            899999999888775          4679999999999988777542       122346789999999998874  578


Q ss_pred             EEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEE----ecCCCC-eEEEEEcCC
Q psy15421        121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF----IGHTGD-VMSLSLAPD  195 (340)
Q Consensus       121 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~----~~~~~~-v~~~~~~~~  195 (340)
                      |.+.|+.+..    +...++.-. . ..+.......+++.+.|+.+.+.+..+++.....    .....+ ...+.+.++
T Consensus       202 VsVID~~t~k----vv~~I~v~g-~-~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~d  275 (426)
T 3c75_H          202 VGVVDLEGKT----FDRMLDVPD-C-YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLR  275 (426)
T ss_dssp             EEEEETTTTE----EEEEEECCS-E-EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTT
T ss_pred             EEEEECCCCe----EEEEEEcCC-c-eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCC
Confidence            9999987653    222332211 1 1111112345677788999888888666544221    111111 123567888


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeee--eEecC---C-------CCCeEEEEEecCCCEEEEEeC----------CCcEEEE
Q psy15421        196 MRTFVSGACDASAKLWDIRDGSCK--QTFPG---H-------ESDINAVTFFPNGWAFATGSD----------DATCRLF  253 (340)
Q Consensus       196 ~~~~~sg~~dg~i~~wd~~~~~~~--~~~~~---h-------~~~v~~v~~~~~~~~l~s~s~----------d~~i~iw  253 (340)
                      +..++.....+.|.+.|+..+...  ..++-   .       ......++++|++.++.....          ++.|.++
T Consensus       276 g~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVI  355 (426)
T 3c75_H          276 SGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVL  355 (426)
T ss_dssp             TCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred             CCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEE
Confidence            887776677899999998654321  11110   0       011123689999776655432          3579999


Q ss_pred             eCcCCcEEEEeecCCcccceEEEEEcCCCc-EEEEEe-CCCcEEEEeCCCceeeeee
Q psy15421        254 DIRADQELAMYSHDNIICGITSVAFSRSGR-LLLAGY-DDFNCNVWDSMKTERAGIL  308 (340)
Q Consensus       254 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~-~d~~i~iw~~~~~~~~~~~  308 (340)
                      |..+.+.+..+....   ....++|+||++ ++++.. .++.|.++|..+++.++.+
T Consensus       356 D~~T~kvv~~I~vg~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          356 NAETGERINKIELGH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             ETTTCCEEEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ECCCCeEEEEEECCC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            999988887764332   367899999999 888877 5899999999999988776

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.45  E-value=2.1e-10  Score=98.35  Aligned_cols=233  Identities=13%  Similarity=0.102  Sum_probs=153.2

Q ss_pred             eEEeeCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeC-CCeEE
Q psy15421         90 VHAIPLRSSWVMTCAYAPSGS-FVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSG-DMSCA  167 (340)
Q Consensus        90 ~~~~~~~~~~i~~v~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~-d~~v~  167 (340)
                      +..+.....+....+|+|+++ ++++...++.+..|+.. +  ....   +..+...+..+.+.+++.++.+.. ++.|.
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g--~~~~---~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~  110 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G--TVDV---LLDATAFTNGNAVDAQQRLVHCEHGRRAIT  110 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-S--CEEE---EEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-C--CEEE---EeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence            334444455667888999998 55666677888889762 2  2222   222345567778877777666654 57899


Q ss_pred             EEECCCCceEEEEecC-----CCCeEEEEEcCCCCEEEE----EeC-------------CCcEEEEECCCCeeeeEecCC
Q psy15421        168 LWDIETGQQCASFIGH-----TGDVMSLSLAPDMRTFVS----GAC-------------DASAKLWDIRDGSCKQTFPGH  225 (340)
Q Consensus       168 iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~s----g~~-------------dg~i~~wd~~~~~~~~~~~~h  225 (340)
                      .|+.. ++. ..+..+     ...+..+++.|++++++|    |..             .+.|..||..+++.....  .
T Consensus       111 ~~~~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~  186 (305)
T 3dr2_A          111 RSDAD-GQA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D  186 (305)
T ss_dssp             EECTT-SCE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E
T ss_pred             EECCC-CCE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c
Confidence            99986 543 222211     124668999999998886    432             256777887666644332  3


Q ss_pred             CCCeEEEEEecCCCEEEEEeCC------CcEEEEeCcCCcEEE---EeecCCcccceEEEEEcCCCcEEEEEeCCCcEEE
Q psy15421        226 ESDINAVTFFPNGWAFATGSDD------ATCRLFDIRADQELA---MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNV  296 (340)
Q Consensus       226 ~~~v~~v~~~~~~~~l~s~s~d------~~i~iwd~~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~i  296 (340)
                      ....+.++|+|+++.++.+...      +.|+.|++.... +.   .+... ....+..++++++|++.++. .+ .|.+
T Consensus       187 ~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~-~~~~pdgi~~d~~G~lwv~~-~~-gv~~  262 (305)
T 3dr2_A          187 LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASV-PDGLPDGFCVDRGGWLWSSS-GT-GVCV  262 (305)
T ss_dssp             ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECC-SSSCCCSEEECTTSCEEECC-SS-EEEE
T ss_pred             CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEEC-CCCCCCeEEECCCCCEEEec-CC-cEEE
Confidence            3457899999999977766655      789999987543 21   11111 11224568899999955544 44 4999


Q ss_pred             EeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       297 w~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      |+. .++.+..+..+. .+.+++|+|+++.|..++.++..++
T Consensus       263 ~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          263 FDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             ECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             ECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            996 566666665544 5889999999988888887766554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.44  E-value=2.6e-10  Score=98.71  Aligned_cols=220  Identities=12%  Similarity=0.082  Sum_probs=143.2

Q ss_pred             EEEEEECCCC-CEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEE
Q psy15421        100 VMTCAYAPSG-SFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCA  178 (340)
Q Consensus       100 i~~v~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~  178 (340)
                      .....|+|++ .++++...++.|..|+..++.  .. ...   ....+.++.+.+++.++.++.+ .|.+||..+++.. 
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~--~~-~~~---~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~-  122 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGR--KT-VHA---LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLT-  122 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTE--EE-EEE---CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEE-
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCc--EE-EEE---CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEE-
Confidence            3456788874 455666677889999876532  11 111   2345677777777776666644 4999999887643 


Q ss_pred             EEecC-----CCCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEE-EEEeC
Q psy15421        179 SFIGH-----TGDVMSLSLAPDMRTFVSGAC------DASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF-ATGSD  246 (340)
Q Consensus       179 ~~~~~-----~~~v~~~~~~~~~~~~~sg~~------dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~s~  246 (340)
                      .+...     ...+..++++|+++++++...      .+.|..++  +++... +..+....+.++|+|+++.+ ++.+.
T Consensus       123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~  199 (326)
T 2ghs_A          123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTK  199 (326)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETT
T ss_pred             EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECC
Confidence            23221     124789999999997776542      24555555  455432 22233457899999999865 44456


Q ss_pred             CCcEEEEeCc--CC-cE--EEEee-cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEE
Q psy15421        247 DATCRLFDIR--AD-QE--LAMYS-HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV  320 (340)
Q Consensus       247 d~~i~iwd~~--~~-~~--~~~~~-~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~  320 (340)
                      ++.|.+||+.  ++ ..  ...+. .......+..++++++|.+.++...++.|..|+. +++.+..+..+...+++++|
T Consensus       200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af  278 (326)
T 2ghs_A          200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAF  278 (326)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEE
T ss_pred             CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEE
Confidence            7899999975  33 21  01111 1111123678899999998888777788999996 66666666666778999999


Q ss_pred             C-CCCCEEEEee
Q psy15421        321 T-EDGMAVATGS  331 (340)
Q Consensus       321 s-~d~~~l~s~s  331 (340)
                      + +++..|+.++
T Consensus       279 ~g~d~~~L~vt~  290 (326)
T 2ghs_A          279 IGPDASRLLVTS  290 (326)
T ss_dssp             ESTTSCEEEEEE
T ss_pred             ecCCCCEEEEEe
Confidence            8 8887664443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.42  E-value=8.5e-11  Score=111.91  Aligned_cols=269  Identities=13%  Similarity=0.082  Sum_probs=175.6

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCc----------E-EEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEE
Q psy15421         67 SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSW----------V-MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV  135 (340)
Q Consensus        67 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----------i-~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  135 (340)
                      +..++.++.++.|+.+|..+++.+.........          + ..+++  .+..++.++.|+.+..+|..+++.....
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            557777888999999999999988776543221          0 01111  3567788889999999998876543332


Q ss_pred             EEeecCCC---cceEEEEEcCCCeEEEEe------CCCeEEEEECCCCceEEEEecCC----------------------
Q psy15421        136 SRELPGHT---GYLSCCRFLDDNQIVTSS------GDMSCALWDIETGQQCASFIGHT----------------------  184 (340)
Q Consensus       136 ~~~~~~~~---~~v~~~~~~~~~~l~~~~------~d~~v~iwd~~~~~~~~~~~~~~----------------------  184 (340)
                        ....+.   ..+.......++.++.+.      .++.|..||..+|+.+..+....                      
T Consensus       148 --~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  225 (689)
T 1yiq_A          148 --DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD  225 (689)
T ss_dssp             --ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred             --cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence              221010   111110001245555543      26899999999999887764210                      


Q ss_pred             ---------CCeEEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCeeeeEecC--CC-------C
Q psy15421        185 ---------GDVMSLSLAPDMRTFVSGACDAS-------------------AKLWDIRDGSCKQTFPG--HE-------S  227 (340)
Q Consensus       185 ---------~~v~~~~~~~~~~~~~sg~~dg~-------------------i~~wd~~~~~~~~~~~~--h~-------~  227 (340)
                               ..-..+++.|+..+++.+..++.                   |..+|.++|+.+-.++.  |.       .
T Consensus       226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~  305 (689)
T 1yiq_A          226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ  305 (689)
T ss_dssp             THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence                     00125788898889998888764                   99999999998766653  21       1


Q ss_pred             CeEEEEEecCCC---EEEEEeCCCcEEEEeCcCCcEEEEeecCCc--cc-------------------------------
Q psy15421        228 DINAVTFFPNGW---AFATGSDDATCRLFDIRADQELAMYSHDNI--IC-------------------------------  271 (340)
Q Consensus       228 ~v~~v~~~~~~~---~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~--~~-------------------------------  271 (340)
                      +........+|+   .++.++.+|.++++|..+++.+........  ..                               
T Consensus       306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~  385 (689)
T 1yiq_A          306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF  385 (689)
T ss_dssp             CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred             CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence            222223333565   788999999999999999888743321110  00                               


Q ss_pred             ----ceEEEEEcCCCcEEEEEeC---------------------------------------------CCcEEEEeCCCc
Q psy15421        272 ----GITSVAFSRSGRLLLAGYD---------------------------------------------DFNCNVWDSMKT  302 (340)
Q Consensus       272 ----~i~~~~~s~~~~~l~~g~~---------------------------------------------d~~i~iw~~~~~  302 (340)
                          .-..++|+|+..++.++..                                             ++.+..||..++
T Consensus       386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG  465 (689)
T 1yiq_A          386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ  465 (689)
T ss_dssp             TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred             ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence                0113688998888777532                                             377999999999


Q ss_pred             eeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        303 ERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       303 ~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +.+-.+..+ .++..-.++..+.+++.|+.|+.++.||
T Consensus       466 ~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D  502 (689)
T 1yiq_A          466 QAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYA  502 (689)
T ss_dssp             EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             CeEeEccCC-CCccCccceECCCEEEEECCCCcEEEEE
Confidence            876655444 3333345666778999999999999986

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.39  E-value=5.1e-11  Score=113.19  Aligned_cols=269  Identities=14%  Similarity=0.127  Sum_probs=178.5

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCc----------E-EEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEE
Q psy15421         67 SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSW----------V-MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV  135 (340)
Q Consensus        67 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----------i-~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  135 (340)
                      +..++.++.++.|..+|..+++.+.........          + ..+++  ++..++.++.|+.+..+|..+++.... 
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~-  153 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWH-  153 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE-
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEee-
Confidence            456777788899999999999988776543210          0 11122  466788888999999999877653332 


Q ss_pred             EEeec-CC--CcceEEEEEcCCCeEEEEeC------CCeEEEEECCCCceEEEEecCCCC--------------------
Q psy15421        136 SRELP-GH--TGYLSCCRFLDDNQIVTSSG------DMSCALWDIETGQQCASFIGHTGD--------------------  186 (340)
Q Consensus       136 ~~~~~-~~--~~~v~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~~--------------------  186 (340)
                       .... ..  ...+.......++.++.++.      ++.|..+|..+|+.+..+......                    
T Consensus       154 -~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~  232 (677)
T 1kb0_A          154 -QNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS  232 (677)
T ss_dssp             -EETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred             -ecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence             2221 00  01111111112455555543      689999999999988776542211                    


Q ss_pred             ------------eEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCeeeeEecC--CC-------
Q psy15421        187 ------------VMSLSLAPDMRTFVSGACDA-------------------SAKLWDIRDGSCKQTFPG--HE-------  226 (340)
Q Consensus       187 ------------v~~~~~~~~~~~~~sg~~dg-------------------~i~~wd~~~~~~~~~~~~--h~-------  226 (340)
                                  ...++++|++..++.+..++                   .|..+|.++|+.+-.++.  |.       
T Consensus       233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~  312 (677)
T 1kb0_A          233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST  312 (677)
T ss_dssp             GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence                        13578889888888877664                   599999999998766543  21       


Q ss_pred             CCeEEEEEecCC---CEEEEEeCCCcEEEEeCcCCcEEEEeecCCcc--------cc-e---------------------
Q psy15421        227 SDINAVTFFPNG---WAFATGSDDATCRLFDIRADQELAMYSHDNII--------CG-I---------------------  273 (340)
Q Consensus       227 ~~v~~v~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~--------~~-i---------------------  273 (340)
                      ....-+....+|   ..++.++.+|.++++|..+++.+..+......        +. +                     
T Consensus       313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~  392 (677)
T 1kb0_A          313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA  392 (677)
T ss_dssp             SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred             CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence            122233444577   68999999999999999999887655321100        00 0                     


Q ss_pred             ---EEEEEcCCCcEEEEEeCC-------------------------------------------CcEEEEeCCCceeeee
Q psy15421        274 ---TSVAFSRSGRLLLAGYDD-------------------------------------------FNCNVWDSMKTERAGI  307 (340)
Q Consensus       274 ---~~~~~s~~~~~l~~g~~d-------------------------------------------~~i~iw~~~~~~~~~~  307 (340)
                         ..++|+|+..++.++..+                                           +.|..||..+++.+-.
T Consensus       393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~  472 (677)
T 1kb0_A          393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS  472 (677)
T ss_dssp             SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred             cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence               156889998888776432                                           6799999998887655


Q ss_pred             eccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        308 LAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       308 ~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +. +..++....++.++..++.++.|+.+++||
T Consensus       473 ~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D  504 (677)
T 1kb0_A          473 VE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (677)
T ss_dssp             EE-ESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             cC-CCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence            53 344555555677788888899999999886

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.34  E-value=1.8e-10  Score=100.87  Aligned_cols=257  Identities=13%  Similarity=0.028  Sum_probs=161.7

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEe----------CCCeEEEEeCCCCCeeEEeeCCC-------CcEEEEEECCC
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSAS----------QDGKLIVWDSYTTNKVHAIPLRS-------SWVMTCAYAPS  108 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~-------~~i~~v~~~~~  108 (340)
                      +...++..-..+  .+.++||++++..+.          .+++|.+||..+.+.+.+++...       .....++++||
T Consensus        57 ~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpD  134 (368)
T 1mda_H           57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS  134 (368)
T ss_dssp             EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred             eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCC
Confidence            444555433345  799999999988876          37899999999999998886541       22456789999


Q ss_pred             CCEEEEEeC--CCeEEE--EEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCC-----CceEEE
Q psy15421        109 GSFVACGGL--DNICSI--YSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIET-----GQQCAS  179 (340)
Q Consensus       109 ~~~l~~~~~--d~~v~i--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~-----~~~~~~  179 (340)
                      |++++++..  ++.+.+  +|..+    .... ..++. ..   +.......+++.+.|+.+.+.|+.+     ++....
T Consensus       135 Gk~lyVan~~~~~~v~V~~iD~~t----v~~i-~v~~~-~~---~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~  205 (368)
T 1mda_H          135 SACLLFFLFGSSAAAGLSVPGASD----DQLT-KSASC-FH---IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ  205 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTTEE----EEEE-ECSSC-CC---CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred             CCEEEEEccCCCCeEEEEEEchhh----ceEE-ECCCc-eE---EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEE
Confidence            999998875  467888  88755    1111 11111 11   1111223456667788888888876     332210


Q ss_pred             ----EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eeeEecC-------CC---CCeEEEEEecCCCEEEE
Q psy15421        180 ----FIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS--CKQTFPG-------HE---SDINAVTFFPNGWAFAT  243 (340)
Q Consensus       180 ----~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~--~~~~~~~-------h~---~~v~~v~~~~~~~~l~s  243 (340)
                          +..-..+.   . .+++..++..+. +.|.+.|+..+.  .+..+.-       +.   .....++++|++.++..
T Consensus       206 ~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV  280 (368)
T 1mda_H          206 CTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             SCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             eeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence                10111222   3 555555555555 999999986532  2222210       00   11112689999887775


Q ss_pred             EeC---------CCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCc-EEEEEe-CCCcEEEEeCCCceeeeeeccCC
Q psy15421        244 GSD---------DATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR-LLLAGY-DDFNCNVWDSMKTERAGILAGHD  312 (340)
Q Consensus       244 ~s~---------d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~-~d~~i~iw~~~~~~~~~~~~~h~  312 (340)
                      +..         +..+.++|..+.+.+..+....   ....++|+|||+ .+++.. .++.|.++|..+.+.+..+.-..
T Consensus       281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~  357 (368)
T 1mda_H          281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK  357 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred             EeccccCcccccCCCEEEEECCCCeEEEEEECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC
Confidence            432         2356699999888776554322   477899999998 455565 58999999999999988876543


Q ss_pred             cceEEEEECC
Q psy15421        313 NRVSCLGVTE  322 (340)
Q Consensus       313 ~~i~~~~~s~  322 (340)
                      .+ ..+++.+
T Consensus       358 ~P-~~i~~~~  366 (368)
T 1mda_H          358 GP-ESLSVQN  366 (368)
T ss_dssp             CC-CEEECCC
T ss_pred             CC-CEEEeec
Confidence            32 4455544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.33  E-value=9.3e-13  Score=116.21  Aligned_cols=205  Identities=13%  Similarity=0.077  Sum_probs=115.4

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecC--CC
Q psy15421         66 DSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPG--HT  143 (340)
Q Consensus        66 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~--~~  143 (340)
                      ++..+++++.|+.|+.||..+++.+..+..  ..+.+..+..++..+++++.|+.+..||..+++.........+.  ..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            577899999999999999999999887776  33444445567778888889999999998776544332211110  01


Q ss_pred             cceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEec
Q psy15421        144 GYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP  223 (340)
Q Consensus       144 ~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~  223 (340)
                      ..+    ...++.+++++.++.+..||..+|+....+..+.    ...++|++..+++++.|+.|..||.++++.+-.++
T Consensus        86 sp~----~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A           86 SPC----RSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             CSC----C-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             Cce----EecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence            111    1134567778889999999999998877665443    23456788889999999999999999988655443


Q ss_pred             CCCCCeEEEEEecCC---CEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcE
Q psy15421        224 GHESDINAVTFFPNG---WAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRL  284 (340)
Q Consensus       224 ~h~~~v~~v~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
                      .+.  ....++.++.   ..++.++.||.++.||..+++.+..+......  +....+++++..
T Consensus       158 ~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv--~~~~~~~~dg~~  217 (369)
T 2hz6_A          158 YFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPV--VAFYVWQREGLR  217 (369)
T ss_dssp             EEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCE--EEEEECTTSSCE
T ss_pred             ccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCce--EEEEEecCCceE
Confidence            211  1122233321   45677889999999999988887766533211  223445566653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.33  E-value=5.4e-09  Score=92.16  Aligned_cols=259  Identities=9%  Similarity=0.029  Sum_probs=161.1

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCC---------CcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEE
Q psy15421         66 DSRNLVSASQDGKLIVWDSYTTNKVHAIPLRS---------SWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVS  136 (340)
Q Consensus        66 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~  136 (340)
                      ++..++.++.++.|..+|..+++.+.......         ..+.. ....++..++.++.++.+..+|..+++..  ..
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~--W~  128 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVA--WQ  128 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEE--EE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEE--EE
Confidence            35677888889999999999999876665432         22222 12224567777888999999998766432  33


Q ss_pred             EeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCe-----EEEEEcCCCCEEEEEeCCCcEEEE
Q psy15421        137 RELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDV-----MSLSLAPDMRTFVSGACDASAKLW  211 (340)
Q Consensus       137 ~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~sg~~dg~i~~w  211 (340)
                      ...........  . ..++.++.++.++.+..+|..+++....+.......     ......  +..++.+..++.+..+
T Consensus       129 ~~~~~~~~~~p--~-~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~  203 (376)
T 3q7m_A          129 TKVAGEALSRP--V-VSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV  203 (376)
T ss_dssp             EECSSCCCSCC--E-EETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred             EeCCCceEcCC--E-EECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence            33322111111  1 135678888889999999999998877665422111     111222  4567788889999999


Q ss_pred             ECCCCeeeeEecCCCCC-------eEEEEEec--CCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCC
Q psy15421        212 DIRDGSCKQTFPGHESD-------INAVTFFP--NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSG  282 (340)
Q Consensus       212 d~~~~~~~~~~~~h~~~-------v~~v~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  282 (340)
                      |.++++.+-..+.....       +..+...|  .+..+..++.++.+..+|..+++.+.......    ...+..  ++
T Consensus       204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~----~~~~~~--~~  277 (376)
T 3q7m_A          204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS----VNDFIV--DG  277 (376)
T ss_dssp             ETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC----EEEEEE--ET
T ss_pred             ECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC----CCCceE--EC
Confidence            99999876555422100       00011111  24567777889999999999888776654322    233333  35


Q ss_pred             cEEEEEeCCCcEEEEeCCCceeeeeecc-CCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        283 RLLLAGYDDFNCNVWDSMKTERAGILAG-HDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       283 ~~l~~g~~d~~i~iw~~~~~~~~~~~~~-h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ..+.+++.++.+..+|..+++..-.... ....+.....  .+..|+.++.+|.+.++|
T Consensus       278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d  334 (376)
T 3q7m_A          278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWIN  334 (376)
T ss_dssp             TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEE
Confidence            6777888899999999988876554431 1122222222  234677777888877664

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.32  E-value=5.1e-10  Score=106.95  Aligned_cols=233  Identities=13%  Similarity=0.082  Sum_probs=141.9

Q ss_pred             CCcEEEEEECCCCCEEEEE-----eCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCC--------
Q psy15421         97 SSWVMTCAYAPSGSFVACG-----GLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGD--------  163 (340)
Q Consensus        97 ~~~i~~v~~~~~~~~l~~~-----~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d--------  163 (340)
                      ...+..++|||||+++|.+     +....|+++|+.+++..   ...++..  ......|+++..|+.++.+        
T Consensus       128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~---~~~~~~~--k~~~~~WsDg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL---ETPLKDV--KFSGISWLGNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE---EEEEEEE--ESCCCEEETTTEEEEEESSCCC-----
T ss_pred             cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCC---ccccCCc--eeccEEEeCCCEEEEEEecCccccccc
Confidence            3457788999999998853     23357999999876421   1122211  1123456644457666665        


Q ss_pred             -----CeEEEEECCCCce--EEEEe--c-CCCCeEEEEEcCCCCEEEEEe----CCCcEEEEECCCCe-eeeEecCCCCC
Q psy15421        164 -----MSCALWDIETGQQ--CASFI--G-HTGDVMSLSLAPDMRTFVSGA----CDASAKLWDIRDGS-CKQTFPGHESD  228 (340)
Q Consensus       164 -----~~v~iwd~~~~~~--~~~~~--~-~~~~v~~~~~~~~~~~~~sg~----~dg~i~~wd~~~~~-~~~~~~~h~~~  228 (340)
                           ..|.+|++.+++.  ...+.  . |......+.++||+++++...    .+..|.++|+.++. ....+..+...
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~  282 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA  282 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence                 3499999987653  22222  2 344578899999999875432    23589999997763 34455556555


Q ss_pred             eEEEEEecCCCEEE-EEeCC---CcEEEEeCcCCcE---EEEeecCCcccceEEEEEcCCCcEEEEEeC-CC--cEEEEe
Q psy15421        229 INAVTFFPNGWAFA-TGSDD---ATCRLFDIRADQE---LAMYSHDNIICGITSVAFSRSGRLLLAGYD-DF--NCNVWD  298 (340)
Q Consensus       229 v~~v~~~~~~~~l~-s~s~d---~~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-d~--~i~iw~  298 (340)
                      .... ++++|..|+ ....+   +.|..+|+.+...   .....+..   .+.  .|+|+++.|+.... ++  .|++|+
T Consensus       283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~---~~~--~~s~~g~~lv~~~~~~g~~~l~~~d  356 (693)
T 3iuj_A          283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ---QVL--TVHSGSGYLFAEYMVDATARVEQFD  356 (693)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS---SCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC---CEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence            5554 566655554 44333   5788999876543   22222222   233  88899988876654 44  688898


Q ss_pred             CCCceeeeeeccCCcceEEEEECCCCCEEEEeeCC----CcEEecC
Q psy15421        299 SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWD----SFLRIWN  340 (340)
Q Consensus       299 ~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D----~~i~iW~  340 (340)
                      ............+.+.+..+++++++..|+....+    +++..||
T Consensus       357 ~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d  402 (693)
T 3iuj_A          357 YEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE  402 (693)
T ss_dssp             TTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred             CCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence            76443322222345677788888888766644433    6676664

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.32  E-value=2.9e-09  Score=93.92  Aligned_cols=261  Identities=9%  Similarity=-0.062  Sum_probs=162.9

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcc
Q psy15421         66 DSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGY  145 (340)
Q Consensus        66 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~  145 (340)
                      ++..++.++.++.|..+|..+++.+...............  .+..++.++.++.+..+|..+++....  .........
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~--~~~~~~~~~  177 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWT--VNLDMPSLS  177 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE--EECCC----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEE--EeCCCCcee
Confidence            4557778889999999999999987766544321111111  245677788899999999876643322  222111100


Q ss_pred             ---eEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCC-------eEEEEEcC--CCCEEEEEeCCCcEEEEEC
Q psy15421        146 ---LSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGD-------VMSLSLAP--DMRTFVSGACDASAKLWDI  213 (340)
Q Consensus       146 ---v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-------v~~~~~~~--~~~~~~sg~~dg~i~~wd~  213 (340)
                         ..... ..++.++.+..++.+..+|..+++...........       +..+...|  .+..++.++.++.+..+|.
T Consensus       178 ~~~~~~~~-~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~  256 (376)
T 3q7m_A          178 LRGESAPT-TAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDL  256 (376)
T ss_dssp             -CCCCCCE-EETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEET
T ss_pred             ecCCCCcE-EECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEEC
Confidence               00001 12567778888999999999999887665422100       00011111  2456777888999999999


Q ss_pred             CCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCc
Q psy15421        214 RDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN  293 (340)
Q Consensus       214 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~  293 (340)
                      ++++.+-....  .....+...  +..+..++.++.+..+|..+++.+........ ..+.....  .+..|++++.+|.
T Consensus       257 ~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~~~g~  329 (376)
T 3q7m_A          257 RSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGNLVVGDSEGY  329 (376)
T ss_dssp             TTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEE--ETTEEEEECTTSE
T ss_pred             CCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEE--ECCEEEEEeCCCe
Confidence            99987655442  234444443  55777888899999999998887766541111 01112222  2567888899999


Q ss_pred             EEEEeCCCceeeeeeccCCcceEE-EEECCCCCEEEEeeCCCcEEecC
Q psy15421        294 CNVWDSMKTERAGILAGHDNRVSC-LGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       294 i~iw~~~~~~~~~~~~~h~~~i~~-~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +..+|..+++.+.........+.+ ...  .+..|+.++.||.|..||
T Consensus       330 l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          330 LHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             EEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            999999998877665543333322 222  234677788899998774

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.31  E-value=1.2e-10  Score=101.60  Aligned_cols=225  Identities=10%  Similarity=0.025  Sum_probs=148.4

Q ss_pred             CcEEEEEECCCCCEEEEEe--CCCeEEEEEccCCCCceEEE----EeecCCCcceEEEEEcCCCeEEEEeC------CCe
Q psy15421         98 SWVMTCAYAPSGSFVACGG--LDNICSIYSLKTREGNVRVS----RELPGHTGYLSCCRFLDDNQIVTSSG------DMS  165 (340)
Q Consensus        98 ~~i~~v~~~~~~~~l~~~~--~d~~v~i~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~l~~~~~------d~~  165 (340)
                      ..+..++++++|+.+++..  .++.+++|.+..  +.....    .....+...+..+.+.+++.|..+..      +..
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~--g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ--DGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET--TEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECC--CCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence            5678899999999988853  233356676652  222100    01112445677888877776655443      578


Q ss_pred             EEEEECCCCceEEEEecC------CCCeEEEEEcCCCC-EEEEEe---CCCcEEEEECCCCeeeeEecCCCCCeE-EEEE
Q psy15421        166 CALWDIETGQQCASFIGH------TGDVMSLSLAPDMR-TFVSGA---CDASAKLWDIRDGSCKQTFPGHESDIN-AVTF  234 (340)
Q Consensus       166 v~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~-~~~sg~---~dg~i~~wd~~~~~~~~~~~~h~~~v~-~v~~  234 (340)
                      |.+||+.+++.+..+...      ...+..++++|++. .+++..   .++.|.+||+.+++..+.+.+|..... ...+
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            999999998866665422      23468999998654 445555   689999999998887776665532111 1445


Q ss_pred             ecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCC-cEEEEeCC---Cc-----eee
Q psy15421        235 FPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDF-NCNVWDSM---KT-----ERA  305 (340)
Q Consensus       235 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~-~i~iw~~~---~~-----~~~  305 (340)
                      .++|..+.+.+.++.++.|..                .+..++|+|+++.|..+..++ .+..++..   .+     +..
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~----------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~  238 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHL----------------GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELG  238 (343)
T ss_dssp             EETTEECBEECTTSCEECCCC----------------CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHH
T ss_pred             eECCEEEEeccCCCceeceec----------------ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhh
Confidence            667877888888888765531                256799999999888877665 44444421   10     000


Q ss_pred             e--eeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        306 G--ILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       306 ~--~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .  ...++......++++++|.++++...++.|.+||
T Consensus       239 ~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d  275 (343)
T 2qe8_A          239 SKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT  275 (343)
T ss_dssp             TTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred             cceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence            0  1123445567799999999999999899999986

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.29  E-value=3.4e-10  Score=97.76  Aligned_cols=262  Identities=10%  Similarity=0.016  Sum_probs=163.8

Q ss_pred             ccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCce
Q psy15421         54 HLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNV  133 (340)
Q Consensus        54 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~  133 (340)
                      +...+.++...+++...+ ++.+  |..+|. +++................+.  +..+..++.++.+..++.. +.  .
T Consensus        58 ~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~--~  128 (330)
T 3hxj_A           58 GEIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GT--E  128 (330)
T ss_dssp             GGEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SC--E
T ss_pred             CCCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CC--E
Confidence            334557777777776444 4444  888886 555443333222212222222  4556677788888888865 32  2


Q ss_pred             EEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy15421        134 RVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDI  213 (340)
Q Consensus       134 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~  213 (340)
                      .....  .+...+......+++.+..++.++.+..+|.. ++....+......+.++...+++.+++..   +.|..+| 
T Consensus       129 ~~~~~--~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-  201 (330)
T 3hxj_A          129 KWRFK--TKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-  201 (330)
T ss_dssp             EEEEE--CSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-
T ss_pred             EEEEc--CCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-
Confidence            22222  22333333344456778888888999999998 77766665555567777777777765544   8899999 


Q ss_pred             CCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCc
Q psy15421        214 RDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN  293 (340)
Q Consensus       214 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~  293 (340)
                      .+++....+......+.++...++|. +..++.++.+..+|. +++.+..+.....  .+..+.+.+++ .|..++.++.
T Consensus       202 ~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~gg  276 (330)
T 3hxj_A          202 PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGH  276 (330)
T ss_dssp             TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCE
T ss_pred             CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCC
Confidence            77766666655556677888888875 455666788888875 3444444433221  12344556565 4556778888


Q ss_pred             EEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        294 CNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       294 i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      +..+|. +++....+.-....+.++...++|.. ..|+.+|.+++
T Consensus       277 l~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~  319 (330)
T 3hxj_A          277 LYAINP-DGTEKWNFETGSWIIATPVIDENGTI-YFGTRNGKFYA  319 (330)
T ss_dssp             EEEECT-TSCEEEEEECSSCCCSCCEECTTCCE-EEECTTSCEEE
T ss_pred             EEEECC-CCcEEEEEEcCCccccceEEcCCCEE-EEEcCCCeEEE
Confidence            999985 66665555444566778888888875 45778888875

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.28  E-value=1.8e-09  Score=102.84  Aligned_cols=258  Identities=15%  Similarity=0.136  Sum_probs=162.2

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCeeEEeeCC--CCcEEEEEECC---CCCEEEEEe-----CCCeEEEEEccCCCCceEEE
Q psy15421         67 SRNLVSASQDGKLIVWDSYTTNKVHAIPLR--SSWVMTCAYAP---SGSFVACGG-----LDNICSIYSLKTREGNVRVS  136 (340)
Q Consensus        67 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~i~~v~~~~---~~~~l~~~~-----~d~~v~i~~~~~~~~~~~~~  136 (340)
                      +..++.++.|+.|..+|..+++.+......  ......+..+|   ++..++..+     .++.+..||..+++......
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            457888889999999999999988766542  11111111122   444443322     36889999988776443322


Q ss_pred             EeecCCC----------------------------cceEEEEEcC-CCeEEEEeCCC-------------------eEEE
Q psy15421        137 RELPGHT----------------------------GYLSCCRFLD-DNQIVTSSGDM-------------------SCAL  168 (340)
Q Consensus       137 ~~~~~~~----------------------------~~v~~~~~~~-~~~l~~~~~d~-------------------~v~i  168 (340)
                      . .++..                            .......+.+ .+.++.+..++                   .|..
T Consensus       201 ~-~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          201 T-VPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             S-SCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             c-cCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            1 11100                            0011234443 45666676665                   4999


Q ss_pred             EECCCCceEEEEec--CC-------CCeEEEEEcCCCC---EEEEEeCCCcEEEEECCCCeeeeEecCCC----------
Q psy15421        169 WDIETGQQCASFIG--HT-------GDVMSLSLAPDMR---TFVSGACDASAKLWDIRDGSCKQTFPGHE----------  226 (340)
Q Consensus       169 wd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~~~sg~~dg~i~~wd~~~~~~~~~~~~h~----------  226 (340)
                      +|..+|+....+..  |.       ..+.......+++   .++.++.+|.+.++|.++|+.+...+-..          
T Consensus       280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~  359 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK  359 (689)
T ss_dssp             EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred             EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence            99999998877764  21       1222223333554   68889999999999999998763221100          


Q ss_pred             ------------------C-----------CeEEEEEecCCCEEEEEeC-------------------------------
Q psy15421        227 ------------------S-----------DINAVTFFPNGWAFATGSD-------------------------------  246 (340)
Q Consensus       227 ------------------~-----------~v~~v~~~~~~~~l~s~s~-------------------------------  246 (340)
                                        .           .-..++++|+...+++...                               
T Consensus       360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  439 (689)
T 1yiq_A          360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM  439 (689)
T ss_dssp             TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred             CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence                              0           0012678888766665422                               


Q ss_pred             --------------CCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCC
Q psy15421        247 --------------DATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHD  312 (340)
Q Consensus       247 --------------d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~  312 (340)
                                    +|.|+.||..+++.+..+.....   .....+...+.+++.|+.|+.++.||..+++.+-.+.-..
T Consensus       440 p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~  516 (689)
T 1yiq_A          440 PEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI---FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS  516 (689)
T ss_dssp             CSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC---ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC
Confidence                          37799999999988877654332   2223555678899999999999999999999887665332


Q ss_pred             -cceEEEEECCCCCEEE
Q psy15421        313 -NRVSCLGVTEDGMAVA  328 (340)
Q Consensus       313 -~~i~~~~~s~d~~~l~  328 (340)
                       ..-.-+.|+.||+.++
T Consensus       517 ~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          517 GVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             CCCSCCEEEEETTEEEE
T ss_pred             CcccCceEEEECCEEEE
Confidence             2224466778886443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.25  E-value=1.5e-09  Score=103.15  Aligned_cols=258  Identities=14%  Similarity=0.060  Sum_probs=165.0

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCeeEEeeCC-C----CcEEEEEECCCCCEEEEEeC------CCeEEEEEccCCCCceEE
Q psy15421         67 SRNLVSASQDGKLIVWDSYTTNKVHAIPLR-S----SWVMTCAYAPSGSFVACGGL------DNICSIYSLKTREGNVRV  135 (340)
Q Consensus        67 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~----~~i~~v~~~~~~~~l~~~~~------d~~v~i~~~~~~~~~~~~  135 (340)
                      +..|+.++.|+.|..+|..+++.+...... .    ..+...-.- .+..++.++.      ++.+..+|..+++...+.
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            457888899999999999999998877654 1    111110000 2344444443      688999998876543332


Q ss_pred             EEeecC----------------------------CCcceEEEEEcC-CCeEEEEeCCC-------------------eEE
Q psy15421        136 SRELPG----------------------------HTGYLSCCRFLD-DNQIVTSSGDM-------------------SCA  167 (340)
Q Consensus       136 ~~~~~~----------------------------~~~~v~~~~~~~-~~~l~~~~~d~-------------------~v~  167 (340)
                      ....+.                            .........+.+ .+.++.+..++                   +|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            211000                            000011234433 45666665543                   599


Q ss_pred             EEECCCCceEEEEec--CC-------CCeEEEEEcCCC---CEEEEEeCCCcEEEEECCCCeeeeEecCCC---------
Q psy15421        168 LWDIETGQQCASFIG--HT-------GDVMSLSLAPDM---RTFVSGACDASAKLWDIRDGSCKQTFPGHE---------  226 (340)
Q Consensus       168 iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~---~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~---------  226 (340)
                      .+|..+|+....+..  |.       ....-+....++   ..++.++.+|.+.++|.++|+.+..++...         
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~  366 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK  366 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence            999999998877654  21       123333444466   678899999999999999998765543110         


Q ss_pred             --CCe------------------------EEEEEecCCCEEEEEeC----------------------------------
Q psy15421        227 --SDI------------------------NAVTFFPNGWAFATGSD----------------------------------  246 (340)
Q Consensus       227 --~~v------------------------~~v~~~~~~~~l~s~s~----------------------------------  246 (340)
                        .++                        ..++++|+...+++...                                  
T Consensus       367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~  446 (677)
T 1kb0_A          367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF  446 (677)
T ss_dssp             TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred             CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccc
Confidence              111                        14688898777766543                                  


Q ss_pred             ---------CCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeec-cCCcceE
Q psy15421        247 ---------DATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA-GHDNRVS  316 (340)
Q Consensus       247 ---------d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~-~h~~~i~  316 (340)
                               .+.|..||..+++.+..+.+..   ++....+..++.+++.|+.|+.+++||..+++.+..+. ++...-.
T Consensus       447 ~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~  523 (677)
T 1kb0_A          447 NAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAA  523 (677)
T ss_dssp             CSSCCCSCCEEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred             ccccCCCCCccEEEEEeCCCCcEEeecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccC
Confidence                     2789999999998887765432   23334566678888899999999999999999887765 3322233


Q ss_pred             EEEECCCCCEEE
Q psy15421        317 CLGVTEDGMAVA  328 (340)
Q Consensus       317 ~~~~s~d~~~l~  328 (340)
                      -+.|+.+|+.++
T Consensus       524 p~~y~~~G~~~v  535 (677)
T 1kb0_A          524 PSTYMVDGRQYV  535 (677)
T ss_dssp             CEEEEETTEEEE
T ss_pred             CEEEEeCCEEEE
Confidence            456678886444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.25  E-value=1.6e-12  Score=114.70  Aligned_cols=177  Identities=14%  Similarity=0.099  Sum_probs=101.6

Q ss_pred             CCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCC-eE-
Q psy15421        153 DDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESD-IN-  230 (340)
Q Consensus       153 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~-v~-  230 (340)
                      .++.+++++.|+.|..||..+|+....+..  +.+.+..+.+++..+++++.||.|..||.++++.+..++.+... +. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            467888999999999999999999887765  45555556677778888889999999999888876555433211 10 


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeecc
Q psy15421        231 AVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAG  310 (340)
Q Consensus       231 ~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~  310 (340)
                      +..+. ++..+++++.|+.++.||..+++.+..+....      ...++|++..+++++.|+.++.||..+++..-.+..
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~  158 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF------ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY  158 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC------cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec
Confidence            00111 34467788889999999999888776654322      234567889999999999999999988876544332


Q ss_pred             CCcceEEEEECCCC---CEEEEeeCCCcEEecC
Q psy15421        311 HDNRVSCLGVTEDG---MAVATGSWDSFLRIWN  340 (340)
Q Consensus       311 h~~~i~~~~~s~d~---~~l~s~s~D~~i~iW~  340 (340)
                      +.  ....+++++.   ..++.++.||.|+.||
T Consensus       159 ~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d  189 (369)
T 2hz6_A          159 FD--YAASLPEDDVDYKMSHFVSNGDGLVVTVD  189 (369)
T ss_dssp             EE--ECCBCCCCCTTCCCCEEEEETSCEEEEEC
T ss_pred             cc--ccCccccCCccccceEEEECCCCEEEEEE
Confidence            11  1223344432   4577788899998886

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.22  E-value=2.8e-09  Score=93.27  Aligned_cols=244  Identities=12%  Similarity=-0.018  Sum_probs=154.9

Q ss_pred             eEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEe----------CCCeEEEEEccCCCCceEEEEeecCC--C--
Q psy15421         78 KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGG----------LDNICSIYSLKTREGNVRVSRELPGH--T--  143 (340)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~----------~d~~v~i~~~~~~~~~~~~~~~~~~~--~--  143 (340)
                      +|.+.|..+.+.+.+++....+  .+.++||+++++.+.          .++.|.+||..+.+.    ..+++..  .  
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v----v~~I~v~~~~~~  120 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP----IADIELPDAPRF  120 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE----EEEEEETTSCSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE----EEEEECCCcccc
Confidence            8889999999999998876666  699999999998886          368899999987642    2332211  0  


Q ss_pred             ---cceEEEEEcCCC-eEEEEeC--CCeEEE--EECCCCceEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECC
Q psy15421        144 ---GYLSCCRFLDDN-QIVTSSG--DMSCAL--WDIETGQQCASFIGHTGDVMSLSLAPDM-RTFVSGACDASAKLWDIR  214 (340)
Q Consensus       144 ---~~v~~~~~~~~~-~l~~~~~--d~~v~i--wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~sg~~dg~i~~wd~~  214 (340)
                         ..-..+.+++++ .++.+..  +..+.+  +|+.+   +..+.. .+ +  ..+.|++ ..+++.+.||.+.+.|+.
T Consensus       121 ~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-~~-~--~~~~p~g~~~~~~~~~dg~~~~vd~~  193 (368)
T 1mda_H          121 SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-AS-C--FHIHPGAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-SS-C--CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred             ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-CC-c--eEEccCCCeEEEEEcCCCCEEEEECc
Confidence               112234566665 4555543  467888  99876   333321 11 1  1223444 355667789999989987


Q ss_pred             C-----Ceeee----EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCc--EEEEeecC-------C-cccceEE
Q psy15421        215 D-----GSCKQ----TFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ--ELAMYSHD-------N-IICGITS  275 (340)
Q Consensus       215 ~-----~~~~~----~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~-------~-~~~~i~~  275 (340)
                      +     ++...    .+.-...+.   . .+++..++-.+. +.+.+.|.....  .+..+...       . ...+...
T Consensus       194 ~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~  268 (368)
T 1mda_H          194 AAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM  268 (368)
T ss_dssp             SSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSC
T ss_pred             cccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCccee
Confidence            6     43221    111112233   3 666666555555 899999986432  11111110       0 0111222


Q ss_pred             EEEcCCCcEEEEEeC-C--------CcEEEEeCCCceeeeeeccCCcceEEEEECCCCC-EEEEee-CCCcEEecC
Q psy15421        276 VAFSRSGRLLLAGYD-D--------FNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGM-AVATGS-WDSFLRIWN  340 (340)
Q Consensus       276 ~~~s~~~~~l~~g~~-d--------~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~-~l~s~s-~D~~i~iW~  340 (340)
                      ++|+|+++.+.++.. +        ..+.++|..+.+.+..+.-.. ....++|+|||+ .+++.. .++.|.|+|
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID  343 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence            689999998887543 2        356699999998888775433 678999999997 566776 589999886

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.21  E-value=7.3e-10  Score=95.65  Aligned_cols=256  Identities=11%  Similarity=0.034  Sum_probs=158.9

Q ss_pred             EEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecC
Q psy15421         62 HWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPG  141 (340)
Q Consensus        62 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~  141 (340)
                      ....++ .+..++.++.|..|| .+++...........+.++...+++.+++ +..+  +..++. ++...  .....  
T Consensus        26 ~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~--~~~~~--   95 (330)
T 3hxj_A           26 ILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEK--WRFDT--   95 (330)
T ss_dssp             EECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECC-SSCE--EEEECC-CGGGG--GGSCC--
T ss_pred             eEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEE-ecCc--EEEECC-CCcEE--EEEEC--
Confidence            333455 455667788999999 77877655554444456666767776544 4444  666664 22211  11111  


Q ss_pred             CCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeE
Q psy15421        142 HTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQT  221 (340)
Q Consensus       142 ~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~  221 (340)
                      ........... ++.+..++.++.+..+|.. ++...........+.++...+++. +..++.++.|..+|.. ++....
T Consensus        96 ~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~  171 (330)
T 3hxj_A           96 KKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR  171 (330)
T ss_dssp             -----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE
T ss_pred             CCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE
Confidence            11111111122 6677788889999999998 777666655555566677777776 5557788999999988 776666


Q ss_pred             ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCC
Q psy15421        222 FPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       222 ~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~  301 (340)
                      +......+.++.+.+++..++..   +.+..+| .+++.+..+....  ..+.++...++|.+. +++.++.+..++ .+
T Consensus       172 ~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~--~~~~~~~~~~~g~l~-v~t~~~gl~~~~-~~  243 (330)
T 3hxj_A          172 FKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGY--WTVTRPAISEDGTIY-VTSLDGHLYAIN-PD  243 (330)
T ss_dssp             EECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSS--CCCSCCEECTTSCEE-EEETTTEEEEEC-TT
T ss_pred             EecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCC--cceeceEECCCCeEE-EEcCCCeEEEEC-CC
Confidence            65555566777787888765544   8899999 5555555443222  236677888887654 466677788887 45


Q ss_pred             ceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        302 TERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       302 ~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++.+..+......+..+.+.+++. |..++.++.|..+|
T Consensus       244 g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          244 GTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAIN  281 (330)
T ss_dssp             SCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEEC
T ss_pred             CCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEEC
Confidence            555544444444445566666665 55566676666654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.20  E-value=5.8e-08  Score=85.82  Aligned_cols=225  Identities=12%  Similarity=0.070  Sum_probs=145.3

Q ss_pred             CCCCEEEE-EeCCCeEEEEEccCCCCceEEEEeec------C-CCcceEEEEEcCCCeEEEEeCC------CeEEEEECC
Q psy15421        107 PSGSFVAC-GGLDNICSIYSLKTREGNVRVSRELP------G-HTGYLSCCRFLDDNQIVTSSGD------MSCALWDIE  172 (340)
Q Consensus       107 ~~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~------~-~~~~v~~~~~~~~~~l~~~~~d------~~v~iwd~~  172 (340)
                      +++++|+. +..++.|.++|+.+.....++...+.      . ....-..+...+++.++++.++      +.+.++|.+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence            77777765 55678899999876544455555542      0 0011122334566666666555      789999999


Q ss_pred             CCceEEEEecCCC---CeEEEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCeeeeEecCC--CCC
Q psy15421        173 TGQQCASFIGHTG---DVMSLSLAPDMRTFVSGA-------------------CDASAKLWDIRDGSCKQTFPGH--ESD  228 (340)
Q Consensus       173 ~~~~~~~~~~~~~---~v~~~~~~~~~~~~~sg~-------------------~dg~i~~wd~~~~~~~~~~~~h--~~~  228 (340)
                      +++.+.++..-..   ....+-|+|+++.+++..                   .+.+|.+||+.+++.+.++.--  ...
T Consensus       173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~  252 (462)
T 2ece_A          173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM  252 (462)
T ss_dssp             TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred             CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence            9998887763222   234577899999988874                   4799999999998877777532  123


Q ss_pred             eEEEEE--ecCCCEEEEEe------CCCcEEEEeCcCCcE--EEEe--ec---CC-----------cccceEEEEEcCCC
Q psy15421        229 INAVTF--FPNGWAFATGS------DDATCRLFDIRADQE--LAMY--SH---DN-----------IICGITSVAFSRSG  282 (340)
Q Consensus       229 v~~v~~--~~~~~~l~s~s------~d~~i~iwd~~~~~~--~~~~--~~---~~-----------~~~~i~~~~~s~~~  282 (340)
                      ...+.|  +|+++++..++      .+++|.+|....+..  ...+  ..   ..           .......+.+||||
T Consensus       253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG  332 (462)
T 2ece_A          253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD  332 (462)
T ss_dssp             EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred             cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence            445656  99998877666      466887766554321  1111  10   00           01236788999999


Q ss_pred             cEEEEEeC-CCcEEEEeCCC---ceeeeeec-c-------C---C---cceEEEEECCCCCEEEEee
Q psy15421        283 RLLLAGYD-DFNCNVWDSMK---TERAGILA-G-------H---D---NRVSCLGVTEDGMAVATGS  331 (340)
Q Consensus       283 ~~l~~g~~-d~~i~iw~~~~---~~~~~~~~-~-------h---~---~~i~~~~~s~d~~~l~s~s  331 (340)
                      ++|.++.. .+.|.+|++..   .+.+..+. +       |   .   +.-..+++||||++|+.+.
T Consensus       333 rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          333 KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99888764 68999999752   23333322 1       1   0   1246789999999888765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.14  E-value=1.8e-08  Score=95.60  Aligned_cols=269  Identities=13%  Similarity=0.123  Sum_probs=169.7

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCc----------E-EEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEE
Q psy15421         67 SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSW----------V-MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV  135 (340)
Q Consensus        67 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----------i-~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  135 (340)
                      +..++.++.++.|..+|..+++.+.........          + ..+++  .+..++.++.|+.+..+|..+++.... 
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~-  142 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS-  142 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE-
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeee-
Confidence            456777888999999999999988776543211          0 01111  356777888899999999877654333 


Q ss_pred             EEeecCC--CcceEEEEEcCCCeEEEEeC------CCeEEEEECCCCceEEEEecCCC----------------------
Q psy15421        136 SRELPGH--TGYLSCCRFLDDNQIVTSSG------DMSCALWDIETGQQCASFIGHTG----------------------  185 (340)
Q Consensus       136 ~~~~~~~--~~~v~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~----------------------  185 (340)
                       ......  ...+.......++.++.+..      ++.|..+|..+|+.+..+.....                      
T Consensus       143 -~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  221 (668)
T 1kv9_A          143 -QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (668)
T ss_dssp             -EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             -eccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence             222111  01111100012455555433      58999999999998877652110                      


Q ss_pred             ---------CeEEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCeeeeEecC--CC-------CC
Q psy15421        186 ---------DVMSLSLAPDMRTFVSGACDAS-------------------AKLWDIRDGSCKQTFPG--HE-------SD  228 (340)
Q Consensus       186 ---------~v~~~~~~~~~~~~~sg~~dg~-------------------i~~wd~~~~~~~~~~~~--h~-------~~  228 (340)
                               ....+++.|+...++.+..++.                   |.-+|.++|+.+-.++.  |.       .+
T Consensus       222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~  301 (668)
T 1kv9_A          222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ  301 (668)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence                     0124688888888888887763                   99999999998766653  22       23


Q ss_pred             eEEEEEecCCC---EEEEEeCCCcEEEEeCcCCcEEEEeecCCc----------ccc-----------------------
Q psy15421        229 INAVTFFPNGW---AFATGSDDATCRLFDIRADQELAMYSHDNI----------ICG-----------------------  272 (340)
Q Consensus       229 v~~v~~~~~~~---~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~----------~~~-----------------------  272 (340)
                      .....+..+|+   .++.++.+|.++++|..+++.+........          ..+                       
T Consensus       302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~  381 (668)
T 1kv9_A          302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH  381 (668)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred             cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence            33333444665   688999999999999998887743321110          000                       


Q ss_pred             -eEEEEEcCCCcEEEEEe------------------------------------CCCcEEEEeCCCceeeeeeccCCcce
Q psy15421        273 -ITSVAFSRSGRLLLAGY------------------------------------DDFNCNVWDSMKTERAGILAGHDNRV  315 (340)
Q Consensus       273 -i~~~~~s~~~~~l~~g~------------------------------------~d~~i~iw~~~~~~~~~~~~~h~~~i  315 (340)
                       -..++++|+..++.+..                                    .++.|..||..+++..=....+ ..+
T Consensus       382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~  460 (668)
T 1kv9_A          382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THW  460 (668)
T ss_dssp             CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSC
T ss_pred             CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCC
Confidence             01267888766655421                                    2378999999888875544322 333


Q ss_pred             EEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        316 SCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       316 ~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ....+...+.+++.++.|+.++.||
T Consensus       461 ~~~~~~t~gg~vf~g~~dg~l~a~d  485 (668)
T 1kv9_A          461 NGGTLSTAGNLVFQGTAAGQMHAYS  485 (668)
T ss_dssp             CCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             cCceeEeCCCEEEEECCcccchhhh
Confidence            3334455677888899999999885

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.04  E-value=3e-06  Score=70.71  Aligned_cols=239  Identities=9%  Similarity=-0.009  Sum_probs=141.3

Q ss_pred             CeEEEEeCCCCCee-----EEeeCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEccCCCCceEEEEeecCCCcceEEEE
Q psy15421         77 GKLIVWDSYTTNKV-----HAIPLRSSWVMTCAYAPSGSFVACGG-LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCR  150 (340)
Q Consensus        77 ~~i~iwd~~~~~~~-----~~~~~~~~~i~~v~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~  150 (340)
                      +.|+.+++......     ..+......+..+++++++..|+.+. ..+.|..++......  .  ............+.
T Consensus        10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--~--~~~~~~~~~p~~ia   85 (267)
T 1npe_A           10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP--T--TIIRQDLGSPEGIA   85 (267)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC--E--EEECTTCCCEEEEE
T ss_pred             CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc--E--EEEECCCCCccEEE
Confidence            46777776544321     11111123467889999766555544 567888888754321  1  11222222345566


Q ss_pred             EcC-CCeEE-EEeCCCeEEEEECCCCceEEEEec-CCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeeeeEe-c
Q psy15421        151 FLD-DNQIV-TSSGDMSCALWDIETGQQCASFIG-HTGDVMSLSLAPDMRTFVSGAC---DASAKLWDIRDGSCKQTF-P  223 (340)
Q Consensus       151 ~~~-~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~sg~~---dg~i~~wd~~~~~~~~~~-~  223 (340)
                      +.+ ++.+. +-...+.|.++++..... ..+.. .......++++|++..++.+..   .+.|..+++.. .....+ .
T Consensus        86 ~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~  163 (267)
T 1npe_A           86 LDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQ  163 (267)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEEC
T ss_pred             EEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEE
Confidence            654 45544 445578899999875332 22222 2246789999996555544433   46888888753 322222 2


Q ss_pred             CCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc
Q psy15421        224 GHESDINAVTFFPNGW-AFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT  302 (340)
Q Consensus       224 ~h~~~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~  302 (340)
                      ......+.++++|++. .+++-...+.|..+|.............   .....++.. .+.++++...++.|..++..++
T Consensus       164 ~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g  239 (267)
T 1npe_A          164 DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS  239 (267)
T ss_dssp             TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE-TTEEEEEETTTTEEEEEETTTT
T ss_pred             CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe-CCEEEEEECCCCeEEEEeCCCC
Confidence            2234578999999765 4566666789999998754333322211   123455554 4555555556789999998888


Q ss_pred             eeeeeeccCC-cceEEEEECCCCC
Q psy15421        303 ERAGILAGHD-NRVSCLGVTEDGM  325 (340)
Q Consensus       303 ~~~~~~~~h~-~~i~~~~~s~d~~  325 (340)
                      +.+..+.... .....+++.|++.
T Consensus       240 ~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          240 KEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CceEEEccccccccceeeecCccC
Confidence            8777765332 2467788888875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.03  E-value=2.8e-07  Score=76.41  Aligned_cols=207  Identities=12%  Similarity=0.073  Sum_probs=134.7

Q ss_pred             eeEEeeCCC-CcEEEEEECCCCCEEEEEeC--CCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCe
Q psy15421         89 KVHAIPLRS-SWVMTCAYAPSGSFVACGGL--DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMS  165 (340)
Q Consensus        89 ~~~~~~~~~-~~i~~v~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~  165 (340)
                      .+.+++... .....+.|++++.++++.+.  ++.|+++|+.+++..  ....+..+. ....+.+..+..+++.-.++.
T Consensus        11 vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~--~~i~l~~~~-fgeGi~~~g~~lyv~t~~~~~   87 (266)
T 2iwa_A           11 VLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVE--NIHKMDDSY-FGEGLTLLNEKLYQVVWLKNI   87 (266)
T ss_dssp             EEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEE--EEEECCTTC-CEEEEEEETTEEEEEETTCSE
T ss_pred             EEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEE--EEEecCCCc-ceEEEEEeCCEEEEEEecCCE
Confidence            344554332 24678999998765555553  578999999876421  111222222 222333333333445556899


Q ss_pred             EEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCC--C---CCeEEEEEecCCCE
Q psy15421        166 CALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGH--E---SDINAVTFFPNGWA  240 (340)
Q Consensus       166 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h--~---~~v~~v~~~~~~~~  240 (340)
                      +.++|..+.+.+..+..-...-  ..+++|++.++.+..++.|.++|..+.+....++--  .   ..++.+.|. ++..
T Consensus        88 v~viD~~t~~v~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l  164 (266)
T 2iwa_A           88 GFIYDRRTLSNIKNFTHQMKDG--WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV  164 (266)
T ss_dssp             EEEEETTTTEEEEEEECCSSSC--CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEEECCCCcEEEEEECCCCCe--EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence            9999999998888775321222  335567777776667899999999998877666421  1   136788888 7877


Q ss_pred             EEEEeCCCcEEEEeCcCCcEEEEeecCCc-----------ccceEEEEEcCCCcEEE-EEeCCCcEEEEeCCC
Q psy15421        241 FATGSDDATCRLFDIRADQELAMYSHDNI-----------ICGITSVAFSRSGRLLL-AGYDDFNCNVWDSMK  301 (340)
Q Consensus       241 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-----------~~~i~~~~~s~~~~~l~-~g~~d~~i~iw~~~~  301 (340)
                      ++....++.|.+.|..+++.+..+.....           ....+.++|+|+++.++ ++....++...++..
T Consensus       165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            77777789999999999888776643211           12468999999986554 555677777777543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.02  E-value=5.8e-08  Score=92.12  Aligned_cols=270  Identities=11%  Similarity=0.043  Sum_probs=148.2

Q ss_pred             EEEEcC-CCCeEEEEeCCC-----------eEEEEeCCCCCeeE--Eee-CCCCcEEEEEECCCCCEEEEEeC-CCeEEE
Q psy15421         60 AMHWGS-DSRNLVSASQDG-----------KLIVWDSYTTNKVH--AIP-LRSSWVMTCAYAPSGSFVACGGL-DNICSI  123 (340)
Q Consensus        60 ~~~~s~-~~~~l~s~~~d~-----------~i~iwd~~~~~~~~--~~~-~~~~~i~~v~~~~~~~~l~~~~~-d~~v~i  123 (340)
                      .+++.+ +++.++.|+.+.           .+.+||..+.+...  .++ .+......+++.++++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            455666 888888887643           58899988776432  222 23334445678899999999984 457899


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEc-CCCeEEEEe-CC-----CeEEEEECCCCceEEEE----ecCCCCeEEEEE
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFL-DDNQIVTSS-GD-----MSCALWDIETGQQCASF----IGHTGDVMSLSL  192 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d-----~~v~iwd~~~~~~~~~~----~~~~~~v~~~~~  192 (340)
                      ||..+.  .+.....++.....- .+... ++..++.|+ .+     ..+.+||..+++-...-    ......-....+
T Consensus       270 yd~~t~--~W~~~~~~~~~R~~~-s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~  346 (656)
T 1k3i_A          270 YDSSSD--SWIPGPDMQVARGYQ-SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY  346 (656)
T ss_dssp             EEGGGT--EEEECCCCSSCCSSC-EEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred             ecCcCC--ceeECCCCCcccccc-ceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccccee
Confidence            998653  222211222211122 22333 445556665 33     56899999876532210    000000000112


Q ss_pred             cCCCCEEEEEeCCC---------cEEEEECCCCeeeeEecCCC---------CCeEEEEEec-CCCEEEEEeCCC-----
Q psy15421        193 APDMRTFVSGACDA---------SAKLWDIRDGSCKQTFPGHE---------SDINAVTFFP-NGWAFATGSDDA-----  248 (340)
Q Consensus       193 ~~~~~~~~sg~~dg---------~i~~wd~~~~~~~~~~~~h~---------~~v~~v~~~~-~~~~l~s~s~d~-----  248 (340)
                      ..++..++.|+.+|         .+..||..+..-......+.         ..-.++.+.. +++.++.|+.++     
T Consensus       347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~  426 (656)
T 1k3i_A          347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD  426 (656)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred             ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC
Confidence            34555556665554         45778887665332221111         1223444543 678888888543     


Q ss_pred             ------cEEEEeCcCCcEEEEe-ecCCcccceEEEEEcCCCcEEEEEeCC-----------CcEEEEeCCCcee--eeee
Q psy15421        249 ------TCRLFDIRADQELAMY-SHDNIICGITSVAFSRSGRLLLAGYDD-----------FNCNVWDSMKTER--AGIL  308 (340)
Q Consensus       249 ------~i~iwd~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~g~~d-----------~~i~iw~~~~~~~--~~~~  308 (340)
                            .+.+||..+..-.... ......-.-.+++..|++++++.|+.+           ..+.+||..+.+-  +..+
T Consensus       427 ~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~  506 (656)
T 1k3i_A          427 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN  506 (656)
T ss_dssp             CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred             cCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCC
Confidence                  6778887654322211 011111012345677899999999864           4688999765432  2222


Q ss_pred             ccCCcceEEEEECCCCCEEEEeeC
Q psy15421        309 AGHDNRVSCLGVTEDGMAVATGSW  332 (340)
Q Consensus       309 ~~h~~~i~~~~~s~d~~~l~s~s~  332 (340)
                      ......-.++.+.|||+.++.||.
T Consensus       507 ~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          507 SIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             SSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCccccccHhhcCCCcEEEecCCC
Confidence            222222244567899999999985

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.02  E-value=1.3e-07  Score=83.51  Aligned_cols=220  Identities=14%  Similarity=0.092  Sum_probs=136.2

Q ss_pred             CCCCeEE-EEeCCCeEEEEeCCCC----CeeEEee-------CCCCcEEEEEECCCCCEEEEEeCC------CeEEEEEc
Q psy15421         65 SDSRNLV-SASQDGKLIVWDSYTT----NKVHAIP-------LRSSWVMTCAYAPSGSFVACGGLD------NICSIYSL  126 (340)
Q Consensus        65 ~~~~~l~-s~~~d~~i~iwd~~~~----~~~~~~~-------~~~~~i~~v~~~~~~~~l~~~~~d------~~v~i~~~  126 (340)
                      +++++|+ ++-.+..|+++|+.+.    +...++.       ........+.++|+| +++++..+      +.+.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            7777655 5667889999998644    3333441       112245677889999 65555444      67889987


Q ss_pred             cCCCCceEEEEeec--CCC-cceEEEEEcCCC-eEEEEe-------------------CCCeEEEEECCCCceEEEEecC
Q psy15421        127 KTREGNVRVSRELP--GHT-GYLSCCRFLDDN-QIVTSS-------------------GDMSCALWDIETGQQCASFIGH  183 (340)
Q Consensus       127 ~~~~~~~~~~~~~~--~~~-~~v~~~~~~~~~-~l~~~~-------------------~d~~v~iwd~~~~~~~~~~~~~  183 (340)
                      .+.+    +....+  ... ..-..+.|+++. .+++..                   .+.+|.+||+.+++...++..-
T Consensus       172 ~T~~----v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg  247 (462)
T 2ece_A          172 YSFE----PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG  247 (462)
T ss_dssp             TTCC----EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred             CCCe----EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence            7654    223332  122 122235566654 455553                   2789999999988777766542


Q ss_pred             -C-CCeEEEEE--cCCCCEEEEEe------CCCcEEEEECCCCee--eeE--ecCC----------------CCCeEEEE
Q psy15421        184 -T-GDVMSLSL--APDMRTFVSGA------CDASAKLWDIRDGSC--KQT--FPGH----------------ESDINAVT  233 (340)
Q Consensus       184 -~-~~v~~~~~--~~~~~~~~sg~------~dg~i~~wd~~~~~~--~~~--~~~h----------------~~~v~~v~  233 (340)
                       . .....+.|  +|++++++.++      .+++|.+|....++.  .+.  +...                ......|.
T Consensus       248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~  327 (462)
T 2ece_A          248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID  327 (462)
T ss_dssp             TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred             CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence             1 23445555  99999877665      567888766554431  111  1110                13467899


Q ss_pred             EecCCCEEEEEeC-CCcEEEEeCcCC---cEEEEeecCCc------------ccceEEEEEcCCCcEEEEEe
Q psy15421        234 FFPNGWAFATGSD-DATCRLFDIRAD---QELAMYSHDNI------------ICGITSVAFSRSGRLLLAGY  289 (340)
Q Consensus       234 ~~~~~~~l~s~s~-d~~i~iwd~~~~---~~~~~~~~~~~------------~~~i~~~~~s~~~~~l~~g~  289 (340)
                      ++|||++|..+.. .+.|.+||+...   +.+......+.            ......+.++|||++|+++.
T Consensus       328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999998766554 789999998632   33333322110            01357789999999999887

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.98  E-value=1.8e-06  Score=71.60  Aligned_cols=193  Identities=11%  Similarity=-0.050  Sum_probs=130.6

Q ss_pred             cEEEEEEcCCCCeEEEEeC--CCeEEEEeCCCCCeeEEeeCCCC-cEEEEEECCCCCEE-EEEeCCCeEEEEEccCCCCc
Q psy15421         57 KIYAMHWGSDSRNLVSASQ--DGKLIVWDSYTTNKVHAIPLRSS-WVMTCAYAPSGSFV-ACGGLDNICSIYSLKTREGN  132 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~-~i~~v~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~  132 (340)
                      ....+.|++++...++.+.  ++.|++.|..+++.+..+..... ....+++.  +..| ++.-.++.+.++|..+.+  
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~--   97 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS--   97 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE--
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCc--
Confidence            3579999998766666654  68999999999999888764332 22234444  4444 444567899999987643  


Q ss_pred             eEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCC-----CCeEEEEEcCCCCEEEEEeCCCc
Q psy15421        133 VRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHT-----GDVMSLSLAPDMRTFVSGACDAS  207 (340)
Q Consensus       133 ~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~sg~~dg~  207 (340)
                        ...+++.....-..+.+ +++.++.+.+++.+.++|..+.+....+..-.     ..++.+.+. ++..++....++.
T Consensus        98 --v~~~i~~g~~~g~glt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~  173 (266)
T 2iwa_A           98 --NIKNFTHQMKDGWGLAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC  173 (266)
T ss_dssp             --EEEEEECCSSSCCEEEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred             --EEEEEECCCCCeEEEEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe
Confidence              23333211111112332 45566666678999999999988777665321     236678887 6766666667899


Q ss_pred             EEEEECCCCeeeeEecCC-------------CCCeEEEEEecCCC-EEEEEeCCCcEEEEeCcC
Q psy15421        208 AKLWDIRDGSCKQTFPGH-------------ESDINAVTFFPNGW-AFATGSDDATCRLFDIRA  257 (340)
Q Consensus       208 i~~wd~~~~~~~~~~~~h-------------~~~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~  257 (340)
                      |.+.|..+++.+..+.-.             ....+.|+|+|++. .|+++...+.+...++..
T Consensus       174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            999999999987776521             12468999999875 566777788888887754

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.96  E-value=3.8e-07  Score=84.87  Aligned_cols=268  Identities=13%  Similarity=0.073  Sum_probs=162.7

Q ss_pred             CCeEEEEeC-CCeEEEEeC-CCCCeeEEeeCCCCc----------E-EEEEECCCCCEEEEEeCCCeEEEEEccCCCCce
Q psy15421         67 SRNLVSASQ-DGKLIVWDS-YTTNKVHAIPLRSSW----------V-MTCAYAPSGSFVACGGLDNICSIYSLKTREGNV  133 (340)
Q Consensus        67 ~~~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~----------i-~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~  133 (340)
                      +..+..++. ++.|.-+|. .+++.+.........          + ..+++  .+..++.++.|+.+..+|..+++...
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            445666677 899999999 899988766533210          0 01111  35677778889998888887765433


Q ss_pred             EEEEeecCCCc--ceEEEEEcCCCeEEEEeC------CCeEEEEECCCCceEEEEecCCCC-------------------
Q psy15421        134 RVSRELPGHTG--YLSCCRFLDDNQIVTSSG------DMSCALWDIETGQQCASFIGHTGD-------------------  186 (340)
Q Consensus       134 ~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~~-------------------  186 (340)
                        ......+..  .+.......++.++.++.      ++.|..+|..+|+.+.++......                   
T Consensus       140 --~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~  217 (571)
T 2ad6_A          140 --EVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             --EEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             --EecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence              233322110  111100012456665554      789999999999988766532110                   


Q ss_pred             ------------------e-EEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCeeeeEecC--CC---
Q psy15421        187 ------------------V-MSLSLAPDMRTFVSGACD----------------ASAKLWDIRDGSCKQTFPG--HE---  226 (340)
Q Consensus       187 ------------------v-~~~~~~~~~~~~~sg~~d----------------g~i~~wd~~~~~~~~~~~~--h~---  226 (340)
                                        + ..+++.++...++.+..+                +.|..+|.++++.+-.++.  |.   
T Consensus       218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d  297 (571)
T 2ad6_A          218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence                              0 235666766666665532                3599999999988766542  21   


Q ss_pred             -----CCeEEEEEecCCC---EEEEEeCCCcEEEEeCcCCcEEEEeecCCcc-----------cce--------------
Q psy15421        227 -----SDINAVTFFPNGW---AFATGSDDATCRLFDIRADQELAMYSHDNII-----------CGI--------------  273 (340)
Q Consensus       227 -----~~v~~v~~~~~~~---~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~-----------~~i--------------  273 (340)
                           .++ -+...++|+   .++.++.+|.++.+|..+++.+..+......           .++              
T Consensus       298 ~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~  376 (571)
T 2ad6_A          298 FAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT  376 (571)
T ss_dssp             CCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred             cccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence                 222 123334674   5778899999999999988877655322100           000              


Q ss_pred             ------------EEEEEcCCCcEEEEEe-------------------------------------CCCcEEEEeCCCcee
Q psy15421        274 ------------TSVAFSRSGRLLLAGY-------------------------------------DDFNCNVWDSMKTER  304 (340)
Q Consensus       274 ------------~~~~~s~~~~~l~~g~-------------------------------------~d~~i~iw~~~~~~~  304 (340)
                                  ..++|+|+..++.+..                                     .++.+..||..+++.
T Consensus       377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~  456 (571)
T 2ad6_A          377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA  456 (571)
T ss_dssp             EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred             EECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence                        2467888877776654                                     347889999888876


Q ss_pred             eeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        305 AGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       305 ~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +-.+.. ...+....+...+..++.++.|+.|+.||
T Consensus       457 ~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D  491 (571)
T 2ad6_A          457 KWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALD  491 (571)
T ss_dssp             EEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             EEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence            554432 22232222233455677788999998875

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.96  E-value=1.2e-07  Score=86.70  Aligned_cols=219  Identities=13%  Similarity=0.090  Sum_probs=139.1

Q ss_pred             CCCEEEEEeCC-CeEEEEEccCCCCceEEEEeecCCCcceEEEEE---cCCCeEEEEe------------------CCCe
Q psy15421        108 SGSFVACGGLD-NICSIYSLKTREGNVRVSRELPGHTGYLSCCRF---LDDNQIVTSS------------------GDMS  165 (340)
Q Consensus       108 ~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~l~~~~------------------~d~~  165 (340)
                      ||++++....+ +.|.+.|+.+.+... +. +++.-.+ ...+.+   .+.+++++++                  .++.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~-ii-~ip~g~~-phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDA-IL-EIPNAKG-IHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEE-EE-ECSSCCS-EEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEee-EE-eCCCCCC-CcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence            78888776654 568888887653211 11 3443222 334444   2345555553                  2457


Q ss_pred             EEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC--------------------------------------c
Q psy15421        166 CALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDA--------------------------------------S  207 (340)
Q Consensus       166 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg--------------------------------------~  207 (340)
                      +.+.|..+++....+.--. ..-.++++|+++++++.+.+.                                      .
T Consensus       177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            9999999988777665322 456778999999888777543                                      4


Q ss_pred             EEEEECCC--Cee-eeEecCCCCCeEEEEEecCCCEEEE-EeCCCcEEEEeCcCCcEE---------EEeecCCcccceE
Q psy15421        208 AKLWDIRD--GSC-KQTFPGHESDINAVTFFPNGWAFAT-GSDDATCRLFDIRADQEL---------AMYSHDNIICGIT  274 (340)
Q Consensus       208 i~~wd~~~--~~~-~~~~~~h~~~v~~v~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~---------~~~~~~~~~~~i~  274 (340)
                      |.+.|.++  ++. +..++. .....++.++|||++++. +..+.+|.++|+.+.+..         ..........+..
T Consensus       256 V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~  334 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL  334 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEE
T ss_pred             EEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcc
Confidence            67777776  433 334431 223457999999997655 456889999999854210         0011122334578


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEEEeCCC----------ceeeeeeccCCcce-----EEEEECCCCCEEEEee
Q psy15421        275 SVAFSRSGRLLLAGYDDFNCNVWDSMK----------TERAGILAGHDNRV-----SCLGVTEDGMAVATGS  331 (340)
Q Consensus       275 ~~~~s~~~~~l~~g~~d~~i~iw~~~~----------~~~~~~~~~h~~~i-----~~~~~s~d~~~l~s~s  331 (340)
                      .++|+|+|...++-.-|+.|..|+..+          .+.+..+.-|-.+-     ....++|||++|+++-
T Consensus       335 h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          335 HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  406 (595)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             eEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence            899999995556677899999999765          44555555554321     2335689999998754

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.94  E-value=2.7e-06  Score=73.17  Aligned_cols=241  Identities=9%  Similarity=0.030  Sum_probs=141.5

Q ss_pred             cCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeC--------------------CCCcEEEEEECC-CCC
Q psy15421         52 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPL--------------------RSSWVMTCAYAP-SGS  110 (340)
Q Consensus        52 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------------~~~~i~~v~~~~-~~~  110 (340)
                      .+....-.+++|+++++.+.++..++.|..||..+++.. .+..                    ....+..+++.+ +++
T Consensus        15 ~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~   93 (322)
T 2fp8_A           15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ   93 (322)
T ss_dssp             ECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE
T ss_pred             CCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc
Confidence            333334567889999987888888999999987765432 2210                    012467889997 565


Q ss_pred             EEEEEeCCCeEEEEEccCCCCceEEEE-eecCC-CcceEEEEEcC-CCeEEEEeC------------------CCeEEEE
Q psy15421        111 FVACGGLDNICSIYSLKTREGNVRVSR-ELPGH-TGYLSCCRFLD-DNQIVTSSG------------------DMSCALW  169 (340)
Q Consensus       111 ~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~~-~~~v~~~~~~~-~~~l~~~~~------------------d~~v~iw  169 (340)
                      ++ .+...+.+..++...+.  ..... ...+. ......+...+ ++.+..+..                  ++.|..+
T Consensus        94 l~-v~d~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  170 (322)
T 2fp8_A           94 LY-IVDCYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY  170 (322)
T ss_dssp             EE-EEETTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred             EE-EEECCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence            44 45445556777654321  11111 11111 12344566666 665444332                  3668888


Q ss_pred             ECCCCceEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCe--eeeEecCCCCCeEEEEEecCCCEEEEEeC
Q psy15421        170 DIETGQQCASFIGHTGDVMSLSLAPDMRTFV-SGACDASAKLWDIRDGS--CKQTFPGHESDINAVTFFPNGWAFATGSD  246 (340)
Q Consensus       170 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-sg~~dg~i~~wd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~s~  246 (340)
                      |..+++... +.........++++|+++.++ +-...+.|..|++....  ....+....+ ...++++++|.++++...
T Consensus       171 d~~~~~~~~-~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          171 DPSTKETTL-LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             ETTTTEEEE-EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred             eCCCCEEEE-eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence            887665322 222223456799999998555 44567899999987421  1112211223 778999999987777654


Q ss_pred             ----------CCcEEEEeCcCCcEEEEeecCC-c-ccceEEEEEcCCCcEEEEEeCCCcEEEEeCC
Q psy15421        247 ----------DATCRLFDIRADQELAMYSHDN-I-ICGITSVAFSRSGRLLLAGYDDFNCNVWDSM  300 (340)
Q Consensus       247 ----------d~~i~iwd~~~~~~~~~~~~~~-~-~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~  300 (340)
                                .+.|..+|.. ++.+..+.... . ...++.+++ .+++++++...++.|..++..
T Consensus       249 ~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          249 ELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             ETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             cccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence                      4667888764 44444443221 1 223556666 466777766677888888753

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.91  E-value=1.1e-06  Score=81.93  Aligned_cols=196  Identities=12%  Similarity=0.050  Sum_probs=122.6

Q ss_pred             CCeEEEEeC-CCeEEEEeC-CCCCeeEEeeCCCCc-----------EEEEEECCCCCE----EEEEeCCCeEEEEEccCC
Q psy15421         67 SRNLVSASQ-DGKLIVWDS-YTTNKVHAIPLRSSW-----------VMTCAYAPSGSF----VACGGLDNICSIYSLKTR  129 (340)
Q Consensus        67 ~~~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~-----------i~~v~~~~~~~~----l~~~~~d~~v~i~~~~~~  129 (340)
                      +..+..++. ++.|.-+|. .+++.+.........           ...++++|.+..    ++.++.|+.+..+|..++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            445666777 899999999 899988766543211           112345433333    777888998888888776


Q ss_pred             CCceEEEEeecCCCc--ceEEEEEcCCCeEEEEe------CCCeEEEEECCCCceEEEEecCCCC---------------
Q psy15421        130 EGNVRVSRELPGHTG--YLSCCRFLDDNQIVTSS------GDMSCALWDIETGQQCASFIGHTGD---------------  186 (340)
Q Consensus       130 ~~~~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~------~d~~v~iwd~~~~~~~~~~~~~~~~---------------  186 (340)
                      +...  ......+..  .+.......++.++.++      .++.|..+|.++|+.+-++......               
T Consensus       142 ~~~W--~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVW--KVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEE--EEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEE--eecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            5333  333222110  11110001245666554      3799999999999988766532111               


Q ss_pred             ----------------------e-EEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCeeeeEecC--C
Q psy15421        187 ----------------------V-MSLSLAPDMRTFVSGACD----------------ASAKLWDIRDGSCKQTFPG--H  225 (340)
Q Consensus       187 ----------------------v-~~~~~~~~~~~~~sg~~d----------------g~i~~wd~~~~~~~~~~~~--h  225 (340)
                                            + ..+++.+....++.+..+                +.|.-+|.++|+.+-.++.  |
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~  299 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH  299 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence                                  0 134566777777777665                3899999999988766553  2


Q ss_pred             C--------CCeEEEEEe-cCC---CEEEEEeCCCcEEEEeCcCCcEEEEee
Q psy15421        226 E--------SDINAVTFF-PNG---WAFATGSDDATCRLFDIRADQELAMYS  265 (340)
Q Consensus       226 ~--------~~v~~v~~~-~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~  265 (340)
                      .        .++. +... .+|   ..++.++.+|.++.+|..+++.+....
T Consensus       300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            1        1221 2222 467   567788999999999999988876553

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.90  E-value=9.6e-07  Score=72.47  Aligned_cols=184  Identities=9%  Similarity=0.047  Sum_probs=123.0

Q ss_pred             CcceEEEEEcCCCeEEEEeCCC--eEEEEECCCCceEEEEecCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeee
Q psy15421        143 TGYLSCCRFLDDNQIVTSSGDM--SCALWDIETGQQCASFIGHTGDVMSLSLAPDMRT-FVSGACDASAKLWDIRDGSCK  219 (340)
Q Consensus       143 ~~~v~~~~~~~~~~l~~~~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~sg~~dg~i~~wd~~~~~~~  219 (340)
                      ..+...+.|.++..+.+++.++  .|+.+|+.+++....+.-. .......+.+++.. ++..-.++.+.+||.++.+.+
T Consensus        42 ~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~  120 (262)
T 3nol_A           42 KAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV  120 (262)
T ss_dssp             TCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             CcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence            3455677777433344555454  8999999999988776543 33333333333444 445557999999999999988


Q ss_pred             eEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecC---CcccceEEEEEcCCCcEEEEEeCCCcEEE
Q psy15421        220 QTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHD---NIICGITSVAFSRSGRLLLAGYDDFNCNV  296 (340)
Q Consensus       220 ~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~g~~d~~i~i  296 (340)
                      .+++... .-..  +.+++..|+.+..+..|.++|..+.+.+......   .....++.+.|. +|++.+..-.+..|.+
T Consensus       121 ~ti~~~~-eG~g--lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~v  196 (262)
T 3nol_A          121 RSFNYDG-EGWG--LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVR  196 (262)
T ss_dssp             EEEECSS-CCCC--EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred             EEEECCC-CceE--EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEE
Confidence            8886422 2223  3456666666666788999999887776655431   111235567776 7777766667889999


Q ss_pred             EeCCCceeeeeeccC------------CcceEEEEECCCCCEEEEee
Q psy15421        297 WDSMKTERAGILAGH------------DNRVSCLGVTEDGMAVATGS  331 (340)
Q Consensus       297 w~~~~~~~~~~~~~h------------~~~i~~~~~s~d~~~l~s~s  331 (340)
                      .|..+++.+..+.-.            .+-.+.+||+|++..|+..+
T Consensus       197 IDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          197 IDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             ECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             EECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            999999887765321            13458999999988776655

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.89  E-value=5.3e-07  Score=74.02  Aligned_cols=181  Identities=7%  Similarity=0.016  Sum_probs=124.6

Q ss_pred             cceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEE--EEEcCCCCEEEEEeCCCcEEEEECCCCeeeeE
Q psy15421        144 GYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMS--LSLAPDMRTFVSGACDASAKLWDIRDGSCKQT  221 (340)
Q Consensus       144 ~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~  221 (340)
                      .+...+.|..+..+.+.+.++.|+.+|+++++.+..+  .......  +++.. .++++..-.++.+.+||.++.+.+.+
T Consensus        55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEE
Confidence            4556777765445666777889999999999987776  2233333  55443 34555566799999999999999888


Q ss_pred             ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCC---cccceEEEEEcCCCcEEEEEeCCCcEEEEe
Q psy15421        222 FPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDN---IICGITSVAFSRSGRLLLAGYDDFNCNVWD  298 (340)
Q Consensus       222 ~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~  298 (340)
                      ++.. ..-..++  +++..|+.+..++.|.++|..+.+.+.......   ....++.+.|. +|++.+..-.+..|.+.|
T Consensus       132 i~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vID  207 (268)
T 3nok_A          132 TRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEID  207 (268)
T ss_dssp             EECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEEC
T ss_pred             EeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEe
Confidence            8742 2223444  567777777678999999998887766553211   12235667777 777666665778999999


Q ss_pred             CCCceeeeeeccC-------------CcceEEEEECCCCCEEEEee
Q psy15421        299 SMKTERAGILAGH-------------DNRVSCLGVTEDGMAVATGS  331 (340)
Q Consensus       299 ~~~~~~~~~~~~h-------------~~~i~~~~~s~d~~~l~s~s  331 (340)
                      ..+++.+..+.-.             .+-.+.+|++|++..|+..+
T Consensus       208 p~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          208 PATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            9999887654311             13468999999876555544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.88  E-value=1.2e-05  Score=68.57  Aligned_cols=237  Identities=14%  Similarity=0.070  Sum_probs=138.6

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCC--eEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDN--ICSI  123 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~--~v~i  123 (340)
                      +....|... .....++|+++++++++-..++.|..||... +....... ......+++.++++++++....+  .+..
T Consensus        23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~   99 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVS   99 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence            334445332 4567899999999888777889999999765 33333322 34578899999999766554332  3444


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEe-CCCeEEEEECCCCce-EEEEe---------cCCCCeEEEEE
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSS-GDMSCALWDIETGQQ-CASFI---------GHTGDVMSLSL  192 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~-~~~~~---------~~~~~v~~~~~  192 (340)
                      ++..+  +........+. ..........+++.++.+. .++.|..+|..+++. +....         ..-.....+  
T Consensus       100 ~d~~~--g~~~~~~~~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--  174 (306)
T 2p4o_A          100 LVKSD--GTVETLLTLPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--  174 (306)
T ss_dssp             EECTT--SCEEEEEECTT-CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred             EcCCC--CeEEEEEeCCC-ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence            55433  33332222221 1222333333455544443 588888888875431 21111         011234455  


Q ss_pred             cCCCCEE-EEEeCCCcEEEEECCC-Cee--eeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCC
Q psy15421        193 APDMRTF-VSGACDASAKLWDIRD-GSC--KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDN  268 (340)
Q Consensus       193 ~~~~~~~-~sg~~dg~i~~wd~~~-~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  268 (340)
                      +|+++.+ ++-...+.|..+++.. +..  ...+.. ......++++++|..+++....+.|.++|.. ++.........
T Consensus       175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~  252 (306)
T 2p4o_A          175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ  252 (306)
T ss_dssp             EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred             CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence            7787655 4555678999999864 321  111211 1234568999999988888888899999975 33322111111


Q ss_pred             cccceEEEEEc---CCCcEEEEEeCCC
Q psy15421        269 IICGITSVAFS---RSGRLLLAGYDDF  292 (340)
Q Consensus       269 ~~~~i~~~~~s---~~~~~l~~g~~d~  292 (340)
                      ....+++++|.   |+++.|.+....+
T Consensus       253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          253 GVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             ccCCceEEEEecccCCCCEEEEECCCC
Confidence            12347899998   8887777665543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.86  E-value=2.7e-06  Score=69.82  Aligned_cols=185  Identities=14%  Similarity=0.123  Sum_probs=123.1

Q ss_pred             cEEEEEECCCCCEEEEEeCCC--eEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCce
Q psy15421         99 WVMTCAYAPSGSFVACGGLDN--ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQ  176 (340)
Q Consensus        99 ~i~~v~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~  176 (340)
                      ....+.|+ ++.++.+.+.++  .|+++|+.+++...  ...++.. .+-..+....+..+++.-.++.+.++|..+.+.
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~--~~~l~~~-~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~  119 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQ--QIELGKR-YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ  119 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEE--EEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTCCE
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEE--EEecCCc-cceeEEEEeCCEEEEEEeeCCEEEEEECccCcE
Confidence            34677888 677777777766  89999988764221  1222221 111223333333344445589999999999998


Q ss_pred             EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCC--C---CCeEEEEEecCCCEEEEEeCCCcEE
Q psy15421        177 CASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGH--E---SDINAVTFFPNGWAFATGSDDATCR  251 (340)
Q Consensus       177 ~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h--~---~~v~~v~~~~~~~~l~s~s~d~~i~  251 (340)
                      +.++.... .-..+  +++++.++....++.|.++|..+.+....++-.  .   ..++.+.|. +|+.++....+..|.
T Consensus       120 ~~ti~~~~-eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~  195 (262)
T 3nol_A          120 VRSFNYDG-EGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIV  195 (262)
T ss_dssp             EEEEECSS-CCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred             EEEEECCC-CceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEE
Confidence            88876432 22333  356676666666888999999998877665431  1   335667776 787777777789999


Q ss_pred             EEeCcCCcEEEEeecCCc----------ccceEEEEEcCCCcEEEEEeCC
Q psy15421        252 LFDIRADQELAMYSHDNI----------ICGITSVAFSRSGRLLLAGYDD  291 (340)
Q Consensus       252 iwd~~~~~~~~~~~~~~~----------~~~i~~~~~s~~~~~l~~g~~d  291 (340)
                      +.|..+++.+..+.....          ..-.+.++|+|+++.|.+.+..
T Consensus       196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            999999988776643221          1246899999998887776654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.85  E-value=9.8e-05  Score=71.56  Aligned_cols=270  Identities=11%  Similarity=0.056  Sum_probs=169.9

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEee-------CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP-------LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      ...|.++...+++.+.+ +..++-+.+||..+++......       .....|.++...++|.+.+.. .+| +.+|+..
T Consensus       214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~G-l~~~~~~  290 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FND-LNIYHEG  290 (795)
T ss_dssp             CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SSC-EEEEETT
T ss_pred             CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CCh-hheEcCC
Confidence            45688888877776555 4444458889977654332211       123568899888888876644 444 6778765


Q ss_pred             CCCCceEEEEeec-----CCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEec-------CCCCeEEEEEcCC
Q psy15421        128 TREGNVRVSRELP-----GHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIG-------HTGDVMSLSLAPD  195 (340)
Q Consensus       128 ~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~  195 (340)
                      ++.  .......+     -....|.++...+++.+-.|+.++-|..++..+++. ..+..       ....|.++...++
T Consensus       291 ~~~--~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~  367 (795)
T 4a2l_A          291 TDS--FASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKD  367 (795)
T ss_dssp             TTE--EEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTT
T ss_pred             CCe--EEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCC
Confidence            431  11111000     123457777666677787888888889998765432 22211       2345889998888


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeeeeEecC--------CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecC
Q psy15421        196 MRTFVSGACDASAKLWDIRDGSCKQTFPG--------HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHD  267 (340)
Q Consensus       196 ~~~~~sg~~dg~i~~wd~~~~~~~~~~~~--------h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  267 (340)
                      +.+. .|..++-|..||..++........        ....|.++...+++..+..|+.++-|..||..+++... +...
T Consensus       368 g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~  445 (795)
T 4a2l_A          368 KNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQR  445 (795)
T ss_dssp             SCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-ECTT
T ss_pred             CCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-eecC
Confidence            8755 477777899999877654332111        13568899988888756677777789999987655332 2211


Q ss_pred             ---CcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeec------cCCcceEEEEECCCCCEEEEeeCCCc
Q psy15421        268 ---NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA------GHDNRVSCLGVTEDGMAVATGSWDSF  335 (340)
Q Consensus       268 ---~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~------~h~~~i~~~~~s~d~~~l~s~s~D~~  335 (340)
                         .....|.++...++|.+.+.. .+| +.+|+..+.+......      -....|.++...++|...+... +|.
T Consensus       446 ~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl  519 (795)
T 4a2l_A          446 NSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGL  519 (795)
T ss_dssp             TSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCE
T ss_pred             CCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cce
Confidence               112358888888888866554 444 8889876654432211      1236799999999998766554 553

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.83  E-value=7.7e-07  Score=84.44  Aligned_cols=260  Identities=14%  Similarity=0.101  Sum_probs=155.0

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCC-cEEEEEECC--CCCEEEEEeC------CCeEEEEEccCCCCceEEEE
Q psy15421         67 SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSS-WVMTCAYAP--SGSFVACGGL------DNICSIYSLKTREGNVRVSR  137 (340)
Q Consensus        67 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~i~~v~~~~--~~~~l~~~~~------d~~v~i~~~~~~~~~~~~~~  137 (340)
                      +..++.++.|+.|..+|..+++.+........ ....+..+|  .+..++.+..      ++.+..+|..+++.......
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            45677888999999999999998877654211 000000111  1334444432      57889999877654333211


Q ss_pred             eecCCC----------------------------cceEEEEEcC-CCeEEEEeCCC-------------------eEEEE
Q psy15421        138 ELPGHT----------------------------GYLSCCRFLD-DNQIVTSSGDM-------------------SCALW  169 (340)
Q Consensus       138 ~~~~~~----------------------------~~v~~~~~~~-~~~l~~~~~d~-------------------~v~iw  169 (340)
                       .++..                            .......+.+ .+.+..+..++                   .|..+
T Consensus       197 -~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          197 -VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             -SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             -cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence             01100                            0011233433 35666666555                   49999


Q ss_pred             ECCCCceEEEEec--CC-------CCeEEEEEcCCCC---EEEEEeCCCcEEEEECCCCeeeeEecCCC-----------
Q psy15421        170 DIETGQQCASFIG--HT-------GDVMSLSLAPDMR---TFVSGACDASAKLWDIRDGSCKQTFPGHE-----------  226 (340)
Q Consensus       170 d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~~~sg~~dg~i~~wd~~~~~~~~~~~~h~-----------  226 (340)
                      |+.+|+....+..  |.       .+.....+..+++   .++.++.+|.+.++|.++|+.+...+...           
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~  355 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence            9999998877754  22       2233333444665   68889999999999999998763322110           


Q ss_pred             -CCe------------------------EEEEEecCCCEEEEE------------------------------------e
Q psy15421        227 -SDI------------------------NAVTFFPNGWAFATG------------------------------------S  245 (340)
Q Consensus       227 -~~v------------------------~~v~~~~~~~~l~s~------------------------------------s  245 (340)
                       .++                        ..++++|+...+...                                    .
T Consensus       356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~  435 (668)
T 1kv9_A          356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (668)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence             000                        125677765544431                                    1


Q ss_pred             CCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcce-EEEEECCCC
Q psy15421        246 DDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRV-SCLGVTEDG  324 (340)
Q Consensus       246 ~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i-~~~~~s~d~  324 (340)
                      .+|.|.-||..+++.+........   .....+...+.++++|+.|+.++.||..+++.+..+.-..... .-+.+..+|
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~~~~---~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G  512 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAG  512 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             ccceEEEEeCCCCcEEEEccCCCC---CcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECC
Confidence            347899999999988776654322   2222344467888899999999999999999887665432211 223344566


Q ss_pred             C-EEEEe
Q psy15421        325 M-AVATG  330 (340)
Q Consensus       325 ~-~l~s~  330 (340)
                      + +++.+
T Consensus       513 ~~yva~~  519 (668)
T 1kv9_A          513 RQYVAIM  519 (668)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5 44443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.83  E-value=7.7e-05  Score=72.29  Aligned_cols=268  Identities=12%  Similarity=0.106  Sum_probs=168.7

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEee-------CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccC
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP-------LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKT  128 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~  128 (340)
                      ..|.++...+++.+.+ |..+ -|.+||..+.+......       .....|.++...++|.+.+ |..++-+..++...
T Consensus       263 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~~  339 (795)
T 4a2l_A          263 NYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL-GTYFGGLNYYHPIR  339 (795)
T ss_dssp             SBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE-EESSSCEEEECGGG
T ss_pred             CeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE-EECCCCeEEeCCCc
Confidence            5699999988887655 4444 58889977654332211       1235689999999888765 55555567777543


Q ss_pred             CCCceEEEEeec----CCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEec--------CCCCeEEEEEcCCC
Q psy15421        129 REGNVRVSRELP----GHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIG--------HTGDVMSLSLAPDM  196 (340)
Q Consensus       129 ~~~~~~~~~~~~----~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--------~~~~v~~~~~~~~~  196 (340)
                      ..  .......+    -....|.++....++.+-.|+.++-+..|+..+++...-...        ....|.++...+++
T Consensus       340 ~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g  417 (795)
T 4a2l_A          340 NR--FKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK  417 (795)
T ss_dssp             GS--SEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred             cc--ceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence            22  11111111    023357777666667777788887899999877643221111        13468899988888


Q ss_pred             CEEEEEeCCCcEEEEECCCCeeeeEec----CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecC----C
Q psy15421        197 RTFVSGACDASAKLWDIRDGSCKQTFP----GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHD----N  268 (340)
Q Consensus       197 ~~~~sg~~dg~i~~wd~~~~~~~~~~~----~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~----~  268 (340)
                      +.+..|..++-|..||.++++......    .....|.++...++|...+.. . +-+..||..+.+... +...    .
T Consensus       418 ~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~-~~~~~~~~~  494 (795)
T 4a2l_A          418 SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTT-IEKEKDGTP  494 (795)
T ss_dssp             TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEE-CCBCTTCCB
T ss_pred             CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEE-ccccccccc
Confidence            845567777779999988776433221    124568999988888755544 4 458889987654322 2211    1


Q ss_pred             -cccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeec-------cCCcceEEEEECCCCCEEEEeeCCCcE
Q psy15421        269 -IICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA-------GHDNRVSCLGVTEDGMAVATGSWDSFL  336 (340)
Q Consensus       269 -~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~-------~h~~~i~~~~~s~d~~~l~s~s~D~~i  336 (340)
                       ....|.++...++|.+.+... + -+..|+..+...  .+.       .....|.++...++|.+.++.. +|..
T Consensus       495 ~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~  565 (795)
T 4a2l_A          495 VVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EGFY  565 (795)
T ss_dssp             CCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SCEE
T ss_pred             cCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CCce
Confidence             113588899999988776554 4 488888665543  221       1345799999999998666544 4543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.81  E-value=2.6e-06  Score=73.24  Aligned_cols=231  Identities=6%  Similarity=-0.025  Sum_probs=141.9

Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeec---------C--------CCcceEEEEEcC-CCeEEEEe
Q psy15421        100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELP---------G--------HTGYLSCCRFLD-DNQIVTSS  161 (340)
Q Consensus       100 i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~---------~--------~~~~v~~~~~~~-~~~l~~~~  161 (340)
                      ...+++.++++++.++..++.|..|+...+.  ........         +        .......+.+.+ ++.|..+.
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG--FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTC--EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCc--eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            3467788899877778888888888765322  21111100         0        012345566664 67777776


Q ss_pred             CCCeEEEEECCCCceEEEEec-----CCCCeEEEEEcC-CCCEEEEEeC-----------------CCcEEEEECCCCee
Q psy15421        162 GDMSCALWDIETGQQCASFIG-----HTGDVMSLSLAP-DMRTFVSGAC-----------------DASAKLWDIRDGSC  218 (340)
Q Consensus       162 ~d~~v~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~~sg~~-----------------dg~i~~wd~~~~~~  218 (340)
                      ..+.+..+|..+++. ..+..     ....+..+++.| +++++++-..                 ++.|..||..+++.
T Consensus        99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            666688888775532 22211     113467899999 8987776432                 36788889877664


Q ss_pred             eeEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEeCcCCc--EEEEeecCCcccceEEEEEcCCCcEEEEEeC-----
Q psy15421        219 KQTFPGHESDINAVTFFPNGWAFA-TGSDDATCRLFDIRADQ--ELAMYSHDNIICGITSVAFSRSGRLLLAGYD-----  290 (340)
Q Consensus       219 ~~~~~~h~~~v~~v~~~~~~~~l~-s~s~d~~i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-----  290 (340)
                      ..... .....+.++++|++..+. +-...+.|..|++....  ....+..  ... ...+++.++|++.++...     
T Consensus       178 ~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~~~~~~  253 (322)
T 2fp8_A          178 TLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSSSEELDGN  253 (322)
T ss_dssp             EEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred             EEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEecCccccc
Confidence            32222 123356799999998554 44567899999987421  1112211  112 677899999997777654     


Q ss_pred             -----CCcEEEEeCCCceeeeeeccC----CcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        291 -----DFNCNVWDSMKTERAGILAGH----DNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       291 -----d~~i~iw~~~~~~~~~~~~~h----~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                           .+.|..++. .++.+..+...    ...++++++ .++.++++...++.|.++
T Consensus       254 ~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~  309 (322)
T 2fp8_A          254 MHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGIL  309 (322)
T ss_dssp             TTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEE
T ss_pred             ccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEE
Confidence                 466888884 46655555432    245677776 467666766667777654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.81  E-value=4.7e-05  Score=65.58  Aligned_cols=271  Identities=9%  Similarity=-0.001  Sum_probs=144.9

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEee----CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCC
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP----LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTRE  130 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~  130 (340)
                      ...+.++.|.+++..++ ++.+|.|. .....++.-....    .....+..+.|.+ +..++ ++..+.+  +....+.
T Consensus        35 ~~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i--~~S~DgG  108 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIM--LHTTDGG  108 (327)
T ss_dssp             SSCEEEEEESSSSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEE--EEESSTT
T ss_pred             CCcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeE--EEECCCC
Confidence            35799999987777666 56777653 3333333212211    1234678888876 44444 4556643  3322222


Q ss_pred             CceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeE-EEEECCCCceEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q psy15421        131 GNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSC-ALWDIETGQQCAS-FIGHTGDVMSLSLAPDMRTFVSGACDASA  208 (340)
Q Consensus       131 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v-~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~sg~~dg~i  208 (340)
                      ...........+...+..+.+.+++.++.++.++.| +-.|  .++.-.. .......+..+++.|++.+++.+...+..
T Consensus       109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~  186 (327)
T 2xbg_A          109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFY  186 (327)
T ss_dssp             SSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEE
T ss_pred             CCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEE
Confidence            222222111122233455555455565555556543 2233  2322211 22345578899999988877666444433


Q ss_pred             EEEEC--CCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecC--CcccceEEEEEcCCCcE
Q psy15421        209 KLWDI--RDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHD--NIICGITSVAFSRSGRL  284 (340)
Q Consensus       209 ~~wd~--~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~  284 (340)
                      +-+|-  .+-+.+.  ......+..+.+.+++..++ ++.+|.+++.+...++.-......  .....+..+++.|++.+
T Consensus       187 ~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~  263 (327)
T 2xbg_A          187 STWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEV  263 (327)
T ss_dssp             EEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCE
T ss_pred             EEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEE
Confidence            44442  2222221  23456788999999887654 456788877642222222111111  11124788999988887


Q ss_pred             EEEEeCCCcEEEEeCCCceeeeeec---cCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        285 LLAGYDDFNCNVWDSMKTERAGILA---GHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       285 l~~g~~d~~i~iw~~~~~~~~~~~~---~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      ++++. ++.+. +....++.-..+.   .+...++++.|.+++. ++.++.+|.|.-+
T Consensus       264 ~~~g~-~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~  318 (327)
T 2xbg_A          264 WLAGG-AGALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRY  318 (327)
T ss_dssp             EEEES-TTCEE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEE
T ss_pred             EEEeC-CCeEE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEE
Confidence            77765 56663 3333333333232   2346678888876655 5566678887654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.81  E-value=2.9e-05  Score=64.65  Aligned_cols=220  Identities=8%  Similarity=-0.028  Sum_probs=133.7

Q ss_pred             CcEEEEEEcCCCCe-EEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEE-EeCCCeEEEEEccCCCCce
Q psy15421         56 AKIYAMHWGSDSRN-LVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVAC-GGLDNICSIYSLKTREGNV  133 (340)
Q Consensus        56 ~~v~~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~-~~~d~~v~i~~~~~~~~~~  133 (340)
                      .....++|++++.. +++-...+.|..++.........+.........+++++++..++. -...+.|.++++.....  
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--  113 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--  113 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--
Confidence            35678999986554 555566789999998765443333333345788999997655544 44567888888753221  


Q ss_pred             EEEEeecCCCcceEEEEEcC-CCeEEEEeC---CCeEEEEECCCCceEEEEe-cCCCCeEEEEEcCCCCEE-EEEeCCCc
Q psy15421        134 RVSRELPGHTGYLSCCRFLD-DNQIVTSSG---DMSCALWDIETGQQCASFI-GHTGDVMSLSLAPDMRTF-VSGACDAS  207 (340)
Q Consensus       134 ~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~---d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~-~sg~~dg~  207 (340)
                      ...  .......-..+.+.+ ++.+..+..   .+.|..+++.... ...+. ........++++|++..+ ++-...+.
T Consensus       114 ~~~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~  190 (267)
T 1npe_A          114 RVL--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR  190 (267)
T ss_dssp             EEE--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             EEE--EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE
Confidence            111  111112334566665 466544443   3678888876432 22222 223457899999986655 45556789


Q ss_pred             EEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCc
Q psy15421        208 AKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR  283 (340)
Q Consensus       208 i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  283 (340)
                      |..+|.........+.+ ......+++. .+..+++....+.|..+|..+++.+..+.... ......+++.|++.
T Consensus       191 I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~~  263 (267)
T 1npe_A          191 AECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECSCC
T ss_pred             EEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCccC
Confidence            99999875443333332 2334567765 45556666667899999998877766654322 11255677777764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.80  E-value=1.8e-05  Score=64.29  Aligned_cols=190  Identities=12%  Similarity=0.014  Sum_probs=124.6

Q ss_pred             EeEEecCccC--cEEEEEEcCCCCeEEEEeCCC--eEEEEeCCCCCeeEEeeCCCCcE-EEEEECCCCCEEEEEeCCCeE
Q psy15421         47 TRRTLRGHLA--KIYAMHWGSDSRNLVSASQDG--KLIVWDSYTTNKVHAIPLRSSWV-MTCAYAPSGSFVACGGLDNIC  121 (340)
Q Consensus        47 ~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~i-~~v~~~~~~~~l~~~~~d~~v  121 (340)
                      ..+++ -|..  -...+.|+. +.++.|.+.+|  .|+..|+.+++.+..+....... -.+++. +++..+..-.++.+
T Consensus        11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v   87 (243)
T 3mbr_X           11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEG   87 (243)
T ss_dssp             EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEE
T ss_pred             EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEE
Confidence            33444 4543  356899986 66777877764  89999999999988887654321 223333 23444445567899


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCC-----CCeEEEEEcCCC
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHT-----GDVMSLSLAPDM  196 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~  196 (340)
                      .+||..+..    ...+++..... ..+.+ +++.|+.+.+++.|.++|..+.+...++....     ..++.+.+. ++
T Consensus        88 ~v~D~~tl~----~~~ti~~~~~G-wglt~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G  160 (243)
T 3mbr_X           88 FVYDLATLT----PRARFRYPGEG-WALTS-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG  160 (243)
T ss_dssp             EEEETTTTE----EEEEEECSSCC-CEEEE-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred             EEEECCcCc----EEEEEeCCCCc-eEEee-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC
Confidence            999987653    33333321111 22333 45566666678999999999988877765421     235566665 66


Q ss_pred             CEEEEEeCCCcEEEEECCCCeeeeEecC-------------CCCCeEEEEEecCCCEEEEEeC
Q psy15421        197 RTFVSGACDASAKLWDIRDGSCKQTFPG-------------HESDINAVTFFPNGWAFATGSD  246 (340)
Q Consensus       197 ~~~~sg~~dg~i~~wd~~~~~~~~~~~~-------------h~~~v~~v~~~~~~~~l~s~s~  246 (340)
                      +.++....+..|.+.|.++++.+..+.-             ...-.+.|+++|++..|...+.
T Consensus       161 ~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          161 ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            6666666788999999999998776541             1135689999998766665554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.80  E-value=1e-05  Score=65.76  Aligned_cols=192  Identities=11%  Similarity=0.053  Sum_probs=124.6

Q ss_pred             EEEeecC-CCcceEEEEEcCCCeEEEEeCC--CeEEEEECCCCceEEEEecCCCC-eEEEEEcCCCCEEEEEeCCCcEEE
Q psy15421        135 VSRELPG-HTGYLSCCRFLDDNQIVTSSGD--MSCALWDIETGQQCASFIGHTGD-VMSLSLAPDMRTFVSGACDASAKL  210 (340)
Q Consensus       135 ~~~~~~~-~~~~v~~~~~~~~~~l~~~~~d--~~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~sg~~dg~i~~  210 (340)
                      +..+.+. ...+...+.|.++..+.+.+.+  +.|+.+|+.+++....+.-.... --.+++.. +++++..-.++.+.+
T Consensus        11 v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v   89 (243)
T 3mbr_X           11 VVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFV   89 (243)
T ss_dssp             EEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEE
T ss_pred             EEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEE
Confidence            3444432 2345667777664334444443  58999999999988776533221 12334432 344555667999999


Q ss_pred             EECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCC---cccceEEEEEcCCCcEEEE
Q psy15421        211 WDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDN---IICGITSVAFSRSGRLLLA  287 (340)
Q Consensus       211 wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~  287 (340)
                      ||.++.+.+.+++... .-..++  +++..|..+..++.|.++|..+.+.+.......   ....++.+.+. +|+.++.
T Consensus        90 ~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyan  165 (243)
T 3mbr_X           90 YDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLAN  165 (243)
T ss_dssp             EETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred             EECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEE
Confidence            9999999988887432 223444  566666666668899999998877766553211   11235566665 6776666


Q ss_pred             EeCCCcEEEEeCCCceeeeeecc-------------CCcceEEEEECCCCCEEEEee
Q psy15421        288 GYDDFNCNVWDSMKTERAGILAG-------------HDNRVSCLGVTEDGMAVATGS  331 (340)
Q Consensus       288 g~~d~~i~iw~~~~~~~~~~~~~-------------h~~~i~~~~~s~d~~~l~s~s  331 (340)
                      .-.+..|.+.|..+++.+..+.-             -.+-.+.++++|++..|+..+
T Consensus       166 vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          166 VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            65677899999999988776431             113468999999887666555

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.80  E-value=2.5e-05  Score=66.53  Aligned_cols=223  Identities=12%  Similarity=0.046  Sum_probs=132.1

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEe-C-CC-eEEEEECCCC
Q psy15421         98 SWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSS-G-DM-SCALWDIETG  174 (340)
Q Consensus        98 ~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~-d~-~v~iwd~~~~  174 (340)
                      .....++++++++++++-..++.|..++...   ........   ......+.+.+++.++.+. . ++ .|..+|..++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g---~~~~~~~~---~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g  105 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG---NQQIHATV---EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG  105 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC---CEEEEEEC---SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC---ceEEEEeC---CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC
Confidence            4567889999998777766778888887643   22211222   2345567777666555444 2 22 4667777777


Q ss_pred             ceEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-eeEe---------cCCCCCeEEEEEecCCCE-EE
Q psy15421        175 QQCASFI-GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC-KQTF---------PGHESDINAVTFFPNGWA-FA  242 (340)
Q Consensus       175 ~~~~~~~-~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~-~~~~---------~~h~~~v~~v~~~~~~~~-l~  242 (340)
                      +...... ........++..+++..+++-..++.|..+|...++. +...         .+.....+.+  +|++.. ++
T Consensus       106 ~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv  183 (306)
T 2p4o_A          106 TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYV  183 (306)
T ss_dssp             CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEE
T ss_pred             eEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEE
Confidence            6432221 1122334555555555555555689999999876531 1100         0111235566  787764 45


Q ss_pred             EEeCCCcEEEEeCcC-CcE--EEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeee--eeccCCcceEE
Q psy15421        243 TGSDDATCRLFDIRA-DQE--LAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAG--ILAGHDNRVSC  317 (340)
Q Consensus       243 s~s~d~~i~iwd~~~-~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~--~~~~h~~~i~~  317 (340)
                      +-...+.|..+++.. ++.  ...+...   .....++++++|+++++-...+.|.+++.. ++...  .+.......++
T Consensus       184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~  259 (306)
T 2p4o_A          184 SNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTA  259 (306)
T ss_dssp             EETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEE
T ss_pred             EeCCCCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceE
Confidence            556678899999864 211  1111111   124568999999988887778899999854 54422  23333456899


Q ss_pred             EEEC---CCCCEEEEeeC
Q psy15421        318 LGVT---EDGMAVATGSW  332 (340)
Q Consensus       318 ~~~s---~d~~~l~s~s~  332 (340)
                      ++|.   ||+..|+.++.
T Consensus       260 ~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          260 VAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             EEECCSTTTTTEEEEEEC
T ss_pred             EEEecccCCCCEEEEECC
Confidence            9998   88776655443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.78  E-value=8.2e-06  Score=75.87  Aligned_cols=256  Identities=13%  Similarity=0.065  Sum_probs=151.2

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCC----cEEE-EEECCCCCEEEEEeC------CCeEEEEEccCCCCceEE
Q psy15421         67 SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSS----WVMT-CAYAPSGSFVACGGL------DNICSIYSLKTREGNVRV  135 (340)
Q Consensus        67 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~i~~-v~~~~~~~~l~~~~~------d~~v~i~~~~~~~~~~~~  135 (340)
                      +..++.++.|+.|..+|..+++.+........    .+.+ -.. .++ .++.+..      ++.+..+|..+++...+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            44677788899999999999998876653220    1110 001 134 4444444      788999998876543332


Q ss_pred             EEeecCCC----------------------------------c--ceEEEEEcC-CCeEEEEeCC---------------
Q psy15421        136 SRELPGHT----------------------------------G--YLSCCRFLD-DNQIVTSSGD---------------  163 (340)
Q Consensus       136 ~~~~~~~~----------------------------------~--~v~~~~~~~-~~~l~~~~~d---------------  163 (340)
                      .  .....                                  +  ......+.+ .+.+..+..+               
T Consensus       193 ~--~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y  270 (571)
T 2ad6_A          193 F--ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW  270 (571)
T ss_dssp             E--SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred             c--cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence            2  11100                                  0  000122322 3455444432               


Q ss_pred             -CeEEEEECCCCceEEEEecC--C-------CCeEEEEEcCCCC---EEEEEeCCCcEEEEECCCCeeeeEecCCC----
Q psy15421        164 -MSCALWDIETGQQCASFIGH--T-------GDVMSLSLAPDMR---TFVSGACDASAKLWDIRDGSCKQTFPGHE----  226 (340)
Q Consensus       164 -~~v~iwd~~~~~~~~~~~~~--~-------~~v~~~~~~~~~~---~~~sg~~dg~i~~wd~~~~~~~~~~~~h~----  226 (340)
                       +.|..+|..+|+....+...  .       ....-+...++++   .++.++.+|.+..+|.++++.+..++-..    
T Consensus       271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w  350 (571)
T 2ad6_A          271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV  350 (571)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence             36999999999988776532  1       1122223334664   56778899999999999998765443111    


Q ss_pred             ---------CCe--------------------------EEEEEecCCCEEEEEe--------------------------
Q psy15421        227 ---------SDI--------------------------NAVTFFPNGWAFATGS--------------------------  245 (340)
Q Consensus       227 ---------~~v--------------------------~~v~~~~~~~~l~s~s--------------------------  245 (340)
                               .++                          ..++++|+...+....                          
T Consensus       351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  430 (571)
T 2ad6_A          351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence                     111                          1357777766655543                          


Q ss_pred             -----------CCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcc
Q psy15421        246 -----------DDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNR  314 (340)
Q Consensus       246 -----------~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~  314 (340)
                                 .++.|..||..+++.+..+.....   +....+...+..++.++.|+.++.+|..+++.+-.+.-....
T Consensus       431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~---~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~  507 (571)
T 2ad6_A          431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA---AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG  507 (571)
T ss_dssp             EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             eccCccccCCCCCCeEEEEECCCCCEEEEecCCCC---ccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCc
Confidence                       357899999998888776654322   111122224567777999999999999999887766432211


Q ss_pred             -eEEEEECCCCCEEEE
Q psy15421        315 -VSCLGVTEDGMAVAT  329 (340)
Q Consensus       315 -i~~~~~s~d~~~l~s  329 (340)
                       -..+.+..+|+.++.
T Consensus       508 ~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          508 IGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             CSCCEEEEETTEEEEE
T ss_pred             EeeeEEEEECCEEEEE
Confidence             122345577765543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.78  E-value=6.5e-06  Score=76.68  Aligned_cols=267  Identities=16%  Similarity=0.102  Sum_probs=155.6

Q ss_pred             CeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcE---------EEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEe
Q psy15421         68 RNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV---------MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRE  138 (340)
Q Consensus        68 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i---------~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~  138 (340)
                      ..++.++.++.|..+|..+++.+..........         ..+++  .+..++.++.++.+..+|..+++...  ...
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W--~~~  144 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVW--KKK  144 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEE--EEE
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEe--eec
Confidence            345555554459999999999887765432210         11111  35567778889988888887765433  222


Q ss_pred             ecCCCc--ceE--EEEEcC--CC--eEEEEe------CCCeEEEEECCCCceEEEEecCCCC------------------
Q psy15421        139 LPGHTG--YLS--CCRFLD--DN--QIVTSS------GDMSCALWDIETGQQCASFIGHTGD------------------  186 (340)
Q Consensus       139 ~~~~~~--~v~--~~~~~~--~~--~l~~~~------~d~~v~iwd~~~~~~~~~~~~~~~~------------------  186 (340)
                      ...+..  .+.  -+....  ++  .++.++      .++.|..+|..+|+.+-........                  
T Consensus       145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~  224 (582)
T 1flg_A          145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP  224 (582)
T ss_dssp             CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred             CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence            222110  010  011111  11  455544      2789999999999887654321100                  


Q ss_pred             -----------------------eEEEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCeee
Q psy15421        187 -----------------------VMSLSLAPDMRTFVSGAC--------------------D----ASAKLWDIRDGSCK  219 (340)
Q Consensus       187 -----------------------v~~~~~~~~~~~~~sg~~--------------------d----g~i~~wd~~~~~~~  219 (340)
                                             -..+++.|...+++.+..                    |    +.|.-+|.++|+.+
T Consensus       225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~  304 (582)
T 1flg_A          225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVK  304 (582)
T ss_dssp             TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEE
T ss_pred             cCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEE
Confidence                                   013556677677776553                    2    68999999999987


Q ss_pred             eEecC--CC--------CCeEEEEEe-cCCC---EEEEEeCCCcEEEEeCcCCcEEEEeecCCcc---------------
Q psy15421        220 QTFPG--HE--------SDINAVTFF-PNGW---AFATGSDDATCRLFDIRADQELAMYSHDNII---------------  270 (340)
Q Consensus       220 ~~~~~--h~--------~~v~~v~~~-~~~~---~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~---------------  270 (340)
                      -.++.  |.        .++. +... .+|+   .++.++.+|.++.+|..+++.+..+......               
T Consensus       305 W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~  383 (582)
T 1flg_A          305 WFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVE  383 (582)
T ss_dssp             EEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEE
T ss_pred             EEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeE
Confidence            66642  32        1221 2222 4663   7888999999999999988887654322100               


Q ss_pred             ---------------------cc-------eEEEEEcCCCcEEEEEe---------------------------------
Q psy15421        271 ---------------------CG-------ITSVAFSRSGRLLLAGY---------------------------------  289 (340)
Q Consensus       271 ---------------------~~-------i~~~~~s~~~~~l~~g~---------------------------------  289 (340)
                                           ++       -..++++|+..++.+..                                 
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~  463 (582)
T 1flg_A          384 REGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDD  463 (582)
T ss_dssp             CTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSS
T ss_pred             ccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCC
Confidence                                 00       01356777655554432                                 


Q ss_pred             CCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        290 DDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       290 ~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .++.+..||..+++.+=....+ .++..-.....+.+++.|+.|+.++.+|
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D  513 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFD  513 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred             CcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEE
Confidence            2578889998888765433222 2222211222455777899999998775

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.74  E-value=5.9e-06  Score=67.86  Aligned_cols=183  Identities=10%  Similarity=-0.004  Sum_probs=124.8

Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEE
Q psy15421         99 WVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCA  178 (340)
Q Consensus        99 ~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~  178 (340)
                      ....+.|+ ++.++.+.+.++.++++|+.+++.....   ++.. .+-..+....+..+.+.-.++.+.+||..+.+.+.
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~---l~~~-~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME---RLGN-IFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE---ECTT-CCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE---CCCC-cceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEE
Confidence            34677777 4667777888889999999876543332   3332 12222444444445555568999999999999888


Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecC--CCC---CeEEEEEecCCCEEEEEeCCCcEEEE
Q psy15421        179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG--HES---DINAVTFFPNGWAFATGSDDATCRLF  253 (340)
Q Consensus       179 ~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~--h~~---~v~~v~~~~~~~~l~s~s~d~~i~iw  253 (340)
                      ++..- ..-..++  ++++.++.+..++.|.++|..+.+.+..++-  +..   .++.+.|. +|+.++....+..|.+.
T Consensus       131 ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI  206 (268)
T 3nok_A          131 TTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI  206 (268)
T ss_dssp             EEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred             EEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence            87642 3333444  5677777767799999999999887776642  222   35677777 78777777778899999


Q ss_pred             eCcCCcEEEEeecCC-----------cccceEEEEEcCCCcEEEEEeC
Q psy15421        254 DIRADQELAMYSHDN-----------IICGITSVAFSRSGRLLLAGYD  290 (340)
Q Consensus       254 d~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~g~~  290 (340)
                      |..+++.+..+....           ...-.+.++|+|+++.|++.+.
T Consensus       207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            999988776654321           1124789999998766665544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.74  E-value=0.00012  Score=70.73  Aligned_cols=276  Identities=8%  Similarity=0.016  Sum_probs=164.1

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEe--------------eCCCCcEEEEEECCCCCEEEEEeCCCeE
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAI--------------PLRSSWVMTCAYAPSGSFVACGGLDNIC  121 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------------~~~~~~i~~v~~~~~~~~l~~~~~d~~v  121 (340)
                      ..|.++...+++.+.+ |...+-|.++|..+.......              ......|.++...++|.+-+ |..++-+
T Consensus       258 ~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWi-gt~~~Gl  335 (781)
T 3v9f_A          258 SYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWI-GTWGGGI  335 (781)
T ss_dssp             CCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEE-EEBSSCE
T ss_pred             ceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEE-EecCCeE
Confidence            5688998888776554 555456888887665432111              12345688988888887665 5555556


Q ss_pred             EEEEccCCCCceEEEEee-------cCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEE---ecCCCCeEEEE
Q psy15421        122 SIYSLKTREGNVRVSREL-------PGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF---IGHTGDVMSLS  191 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~~v~~~~  191 (340)
                      ..++.....  .......       ......|.++....++.+-.|+.++-+..+|..+++...-.   ......|.++.
T Consensus       336 ~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~  413 (781)
T 3v9f_A          336 NFISNAPPT--FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL  413 (781)
T ss_dssp             EEECSSCCS--CEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred             EEeCCCCCc--ceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence            777754332  1111100       01234567666666677777776677888988654322110   11235688888


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCeeeeEec--CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecC--
Q psy15421        192 LAPDMRTFVSGACDASAKLWDIRDGSCKQTFP--GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHD--  267 (340)
Q Consensus       192 ~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--  267 (340)
                      ..+++.+.+ |..++-+..+|.++++......  .....|.++...+++...+ |+. +-+..+|..+.+........  
T Consensus       414 ~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~  490 (781)
T 3v9f_A          414 KDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNS  490 (781)
T ss_dssp             ECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTS
T ss_pred             ECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCccc
Confidence            888777655 6666778889987776432221  1345788998888886444 454 56888987765432221111  


Q ss_pred             -CcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeecc---CCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        268 -NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAG---HDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       268 -~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~---h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                       .....|.++...++|.+.+....+| +..|+..+.+.......   ....|.++...++|.+.++.. +|.|..||
T Consensus       491 ~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d  565 (781)
T 3v9f_A          491 QLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPS  565 (781)
T ss_dssp             SCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred             ccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence             0123588899999888766443355 77788655443221111   135789999999998666544 66645443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.69  E-value=1.9e-05  Score=73.56  Aligned_cols=253  Identities=15%  Similarity=0.081  Sum_probs=148.3

Q ss_pred             EEEEeCCCeEEEEeCCCCCeeEEeeCCCC----cEEE-EEECCCCCEEEEEe------CCCeEEEEEccCCCCceEEEEe
Q psy15421         70 LVSASQDGKLIVWDSYTTNKVHAIPLRSS----WVMT-CAYAPSGSFVACGG------LDNICSIYSLKTREGNVRVSRE  138 (340)
Q Consensus        70 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~i~~-v~~~~~~~~l~~~~------~d~~v~i~~~~~~~~~~~~~~~  138 (340)
                      |+.++.|+.|..+|..+++.+........    .+.+ -.. .++ .++.++      .++.++.+|..+++...+..  
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~--  199 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY--  199 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE--
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEc--
Confidence            77888999999999999998876554320    1111 001 134 444444      37889999988765443322  


Q ss_pred             ecCCC----------------------------------c-ce-EEEEEc-CCCeEEEEeCC----------------Ce
Q psy15421        139 LPGHT----------------------------------G-YL-SCCRFL-DDNQIVTSSGD----------------MS  165 (340)
Q Consensus       139 ~~~~~----------------------------------~-~v-~~~~~~-~~~~l~~~~~d----------------~~  165 (340)
                      .....                                  + .+ ....+. ..+.+..+..+                ++
T Consensus       200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~s  279 (599)
T 1w6s_A          200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT  279 (599)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred             CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccce
Confidence            11100                                  0 00 011222 34555555554                48


Q ss_pred             EEEEECCCCceEEEEecCCC---------CeEEEEEc-CCC---CEEEEEeCCCcEEEEECCCCeeeeEecCC-------
Q psy15421        166 CALWDIETGQQCASFIGHTG---------DVMSLSLA-PDM---RTFVSGACDASAKLWDIRDGSCKQTFPGH-------  225 (340)
Q Consensus       166 v~iwd~~~~~~~~~~~~~~~---------~v~~~~~~-~~~---~~~~sg~~dg~i~~wd~~~~~~~~~~~~h-------  225 (340)
                      |..+|..+|+....+.....         ...-+... .++   ..++.++.+|.+.++|.++|+.+-..+..       
T Consensus       280 v~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~  359 (599)
T 1w6s_A          280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFK  359 (599)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccc
Confidence            99999999998877654221         11222332 566   46777889999999999999876544311       


Q ss_pred             ------CCCe--------------------------EEEEEecCCCEEEEE-----------------------------
Q psy15421        226 ------ESDI--------------------------NAVTFFPNGWAFATG-----------------------------  244 (340)
Q Consensus       226 ------~~~v--------------------------~~v~~~~~~~~l~s~-----------------------------  244 (340)
                            ..++                          ..++++|+...+.+.                             
T Consensus       360 ~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  439 (599)
T 1w6s_A          360 SVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMY  439 (599)
T ss_dssp             EECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             ccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceec
Confidence                  1111                          134566654444332                             


Q ss_pred             ----e------CCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCc-
Q psy15421        245 ----S------DDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDN-  313 (340)
Q Consensus       245 ----s------~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~-  313 (340)
                          +      .+|.+.-||..+++.+........   ...-.....+.+++.|+.|+.++.||..+++.+-.+.-... 
T Consensus       440 ~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~  516 (599)
T 1w6s_A          440 PGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFA---VWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA  516 (599)
T ss_dssp             ECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             cCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCC---ccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc
Confidence                1      357899999998888776643321   11111222466777799999999999999988765542221 


Q ss_pred             ceEEEEECCCCC-EEEE
Q psy15421        314 RVSCLGVTEDGM-AVAT  329 (340)
Q Consensus       314 ~i~~~~~s~d~~-~l~s  329 (340)
                      ...-+.+..+|+ |+++
T Consensus       517 ~~~P~~y~~~G~qyv~~  533 (599)
T 1w6s_A          517 IGYPMTYTHKGTQYVAI  533 (599)
T ss_dssp             CSCCEEEEETTEEEEEE
T ss_pred             EeccEEEEeCCEEEEEE
Confidence            112245566776 4443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=0.00015  Score=70.13  Aligned_cols=271  Identities=8%  Similarity=0.022  Sum_probs=164.1

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEe---------eCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAI---------PLRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      ...|.++...+++. |-.|..++-|..++..+.......         ......|.++...+++.+.+ |..++-+..++
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~  389 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWI-GTDGGGINVFE  389 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEE-EEBSSCEEEEE
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEE-EeCCCcEEEEE
Confidence            35789999888876 455676777888987654432211         11235688888888887664 45445567777


Q ss_pred             ccCCCCceEEEE-eecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEec---CCCCeEEEEEcCCCCEEEE
Q psy15421        126 LKTREGNVRVSR-ELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIG---HTGDVMSLSLAPDMRTFVS  201 (340)
Q Consensus       126 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~s  201 (340)
                      ..++.  ..... ........|.++....++.|-.|+.++-+..+|..+++. ..+..   ....|.++...+++.+.+ 
T Consensus       390 ~~~~~--~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lwi-  465 (781)
T 3v9f_A          390 NGKRV--AIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKF-QIIELEKNELLDVRVFYEDKNKKIWI-  465 (781)
T ss_dssp             TTEEE--EECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEE-EECCSTTTCCCCEEEEEECTTSEEEE-
T ss_pred             CCCCe--EEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcE-EEeccCCCCCCeEEEEEECCCCCEEE-
Confidence            54321  11100 001223456666665567777788777788999877643 22221   235688888888876555 


Q ss_pred             EeCCCcEEEEECCCCeeeeEecCC-----CCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecC-C-cccceE
Q psy15421        202 GACDASAKLWDIRDGSCKQTFPGH-----ESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHD-N-IICGIT  274 (340)
Q Consensus       202 g~~dg~i~~wd~~~~~~~~~~~~h-----~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-~-~~~~i~  274 (340)
                      |.. +-|..+|..+++........     ...|.++...++|...+. +.++-+..||..+.+.. .+... . ....|.
T Consensus       466 gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~  542 (781)
T 3v9f_A          466 GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVR-KFNQYEGFCSNTIN  542 (781)
T ss_dssp             EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEE-EECTTTTCSCSCEE
T ss_pred             EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEE-EccCCCCCCCCeeE
Confidence            444 56888998776543322211     357899999988875554 44344777887655432 23211 1 123478


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccC----CcceEEEEECCCCCEEEEeeCCCcEE
Q psy15421        275 SVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGH----DNRVSCLGVTEDGMAVATGSWDSFLR  337 (340)
Q Consensus       275 ~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h----~~~i~~~~~s~d~~~l~s~s~D~~i~  337 (340)
                      ++...++|.+.++ +.+|.+..|+..+.+. ..+...    ...|.++...++|.+.+++ .+|..+
T Consensus       543 ~i~~d~~g~lWi~-T~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~Gl~~  606 (781)
T 3v9f_A          543 QIYRSSKGQMWLA-TGEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWAST-NTGISC  606 (781)
T ss_dssp             EEEECTTSCEEEE-ETTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEEC-SSCEEE
T ss_pred             EEEECCCCCEEEE-ECCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEEc-CCceEE
Confidence            8888888886654 4466558888655432 222211    2467888889999866654 455443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.65  E-value=4.1e-06  Score=76.67  Aligned_cols=179  Identities=10%  Similarity=-0.036  Sum_probs=123.1

Q ss_pred             EEEEeCCCeEEEEECCCCceEEEEec-CCCCeEEEEE-c-CCCCEEEEEe------------------CCCcEEEEECCC
Q psy15421        157 IVTSSGDMSCALWDIETGQQCASFIG-HTGDVMSLSL-A-PDMRTFVSGA------------------CDASAKLWDIRD  215 (340)
Q Consensus       157 l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~~~sg~------------------~dg~i~~wd~~~  215 (340)
                      +++...+..|.+.|+.+.+....+.- ....+..+++ + |+++++++++                  .++.+.+.|..+
T Consensus       105 fVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t  184 (595)
T 1fwx_A          105 FMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK  184 (595)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTT
T ss_pred             EEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCC
Confidence            34444577899999999987775432 2245778887 5 9999988874                  356899999999


Q ss_pred             CeeeeEecCCCCCeEEEEEecCCCEEEEEeCCC--------------------------------------cEEEEeCcC
Q psy15421        216 GSCKQTFPGHESDINAVTFFPNGWAFATGSDDA--------------------------------------TCRLFDIRA  257 (340)
Q Consensus       216 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~--------------------------------------~i~iwd~~~  257 (340)
                      .+....+.--. ....++++|+|+++++.+.+.                                      .|.+.|..+
T Consensus       185 ~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~  263 (595)
T 1fwx_A          185 WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRK  263 (595)
T ss_dssp             TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSG
T ss_pred             CeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcc
Confidence            88776665212 345678999999988877553                                      356666665


Q ss_pred             --CcE-EEEeecCCcccceEEEEEcCCCcEEEEEe-CCCcEEEEeCCCce------------eeeeeccCCcceEEEEEC
Q psy15421        258 --DQE-LAMYSHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMKTE------------RAGILAGHDNRVSCLGVT  321 (340)
Q Consensus       258 --~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~d~~i~iw~~~~~~------------~~~~~~~h~~~i~~~~~s  321 (340)
                        .+. +......   ....++.++|||+++++++ .+.+|.++|..+.+            ...... -...-..++|+
T Consensus       264 ~~~~~~~~~Ipvg---~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~  339 (595)
T 1fwx_A          264 EASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFD  339 (595)
T ss_dssp             GGCCSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEEC
T ss_pred             cCCceeEEEEecC---CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEEC
Confidence              222 2222211   1356789999999877655 67899999987653            122221 12345678999


Q ss_pred             CCCCEEEEeeCCCcEEecC
Q psy15421        322 EDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       322 ~d~~~l~s~s~D~~i~iW~  340 (340)
                      |||...++.-.|++|.+||
T Consensus       340 ~dG~aY~t~~ldsqV~kwd  358 (595)
T 1fwx_A          340 GRGNAYTSLFLDSQVVKWN  358 (595)
T ss_dssp             TTSEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEEecCCcEEEEE
Confidence            9997677888899999996

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.59  E-value=0.00012  Score=68.27  Aligned_cols=257  Identities=14%  Similarity=0.131  Sum_probs=148.7

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCC----cE---EEEEEC-CCCC-EEEEEe------CCCeEEEEEccCCCC
Q psy15421         67 SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSS----WV---MTCAYA-PSGS-FVACGG------LDNICSIYSLKTREG  131 (340)
Q Consensus        67 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~i---~~v~~~-~~~~-~l~~~~------~d~~v~i~~~~~~~~  131 (340)
                      +..++.++.|+.|..+|..+++.+........    .+   ..+.-. .+++ .++++.      .++.+..+|..+++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            45677788999999999999998876654321    01   111111 1233 555554      267888888776653


Q ss_pred             ceEEEEeecC-CC------------------------------------c-ce-EEEEEc-CCCeEEEEeC---------
Q psy15421        132 NVRVSRELPG-HT------------------------------------G-YL-SCCRFL-DDNQIVTSSG---------  162 (340)
Q Consensus       132 ~~~~~~~~~~-~~------------------------------------~-~v-~~~~~~-~~~~l~~~~~---------  162 (340)
                      ...  ..... +.                                    + .+ ....+. ..+.+..+..         
T Consensus       197 ~W~--~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~  274 (582)
T 1flg_A          197 IWM--RPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA  274 (582)
T ss_dssp             EEE--EESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred             Eee--cCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence            332  11100 00                                    0 00 011222 2345554442         


Q ss_pred             -----------C----CeEEEEECCCCceEEEEec--CCC-------CeEEEEEc-CCCC---EEEEEeCCCcEEEEECC
Q psy15421        163 -----------D----MSCALWDIETGQQCASFIG--HTG-------DVMSLSLA-PDMR---TFVSGACDASAKLWDIR  214 (340)
Q Consensus       163 -----------d----~~v~iwd~~~~~~~~~~~~--~~~-------~v~~~~~~-~~~~---~~~sg~~dg~i~~wd~~  214 (340)
                                 |    +.|..+|..+|+..-.+..  |..       ...-+... .+++   .++.++.+|.+.++|.+
T Consensus       275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~  354 (582)
T 1flg_A          275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRS  354 (582)
T ss_dssp             GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred             cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECC
Confidence                       2    6899999999998877653  321       11112222 4664   67789999999999999


Q ss_pred             CCeeeeEecCCC-------------CCe--------------------------------EEEEEecCCCEEEEEe----
Q psy15421        215 DGSCKQTFPGHE-------------SDI--------------------------------NAVTFFPNGWAFATGS----  245 (340)
Q Consensus       215 ~~~~~~~~~~h~-------------~~v--------------------------------~~v~~~~~~~~l~s~s----  245 (340)
                      +|+.+..++...             .++                                ..++++|+...+....    
T Consensus       355 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~  434 (582)
T 1flg_A          355 NGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK  434 (582)
T ss_dssp             TCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred             CCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence            998765443221             000                                1245566543333321    


Q ss_pred             -----------------------------CCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEE
Q psy15421        246 -----------------------------DDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNV  296 (340)
Q Consensus       246 -----------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~i  296 (340)
                                                   .+|.|.-||..+++.+.........   ..-.....+.+++.|+.|+.++.
T Consensus       435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~---~~g~~~tagglvf~g~~dg~l~A  511 (582)
T 1flg_A          435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL---WAGVLATAGNLVFTGTGDGYFKA  511 (582)
T ss_dssp             EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC---CSCCEEETTTEEEEECTTSEEEE
T ss_pred             eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC---cccceEeCCCEEEEECCCCcEEE
Confidence                                         3688999999998887766543211   11111124667778999999999


Q ss_pred             EeCCCceeeeeeccCCcce-EEEEECCCCCEEE
Q psy15421        297 WDSMKTERAGILAGHDNRV-SCLGVTEDGMAVA  328 (340)
Q Consensus       297 w~~~~~~~~~~~~~h~~~i-~~~~~s~d~~~l~  328 (340)
                      ||..+++.+-.+.-....+ .-+.|..+|+.++
T Consensus       512 ~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          512 FDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             EECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence            9999999877665432221 2256667886433

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.55  E-value=0.00033  Score=60.81  Aligned_cols=241  Identities=8%  Similarity=-0.002  Sum_probs=137.2

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEccCCCCceE
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGG-LDNICSIYSLKTREGNVR  134 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~  134 (340)
                      +...|.+..++..+++  +....|+..++........+.. ......++|.+.+..|+... ..+.|..+++...... .
T Consensus        34 d~~~C~~~~~~~~ll~--~~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~  109 (349)
T 3v64_C           34 DRRSCKALGPEPVLLF--ANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-E  109 (349)
T ss_dssp             TSSCEEESSSCCEEEE--ECBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-E
T ss_pred             CCCcccccccCceeEe--ecccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCce-E
Confidence            3445555555433333  3445688888765544333332 34477899997666555444 5677777777543211 1


Q ss_pred             EEEeecCCCcceEEEEEc-CCCe-EEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEE-EEEeCC-CcEEE
Q psy15421        135 VSRELPGHTGYLSCCRFL-DDNQ-IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTF-VSGACD-ASAKL  210 (340)
Q Consensus       135 ~~~~~~~~~~~v~~~~~~-~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~sg~~d-g~i~~  210 (340)
                      +   ..........+.+. .++. +++-...+.|.+.++........+.........+++.|.+..+ .+-... +.|..
T Consensus       110 ~---~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r  186 (349)
T 3v64_C          110 V---VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEA  186 (349)
T ss_dssp             E---ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             E---EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence            1   11111122334443 2344 4555567889999987543322232333567899999965544 454445 78888


Q ss_pred             EECCCCeeeeEe-cCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEE
Q psy15421        211 WDIRDGSCKQTF-PGHESDINAVTFFPNGW-AFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAG  288 (340)
Q Consensus       211 wd~~~~~~~~~~-~~h~~~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g  288 (340)
                      +++... ....+ ...-...+.++++|++. .+++=+..+.|..+|+.......... .. ......+++ ..+.++++-
T Consensus       187 ~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~-~~-~~~P~giav-~~~~ly~td  262 (349)
T 3v64_C          187 SSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QG-LPHPFAITV-FEDSLYWTD  262 (349)
T ss_dssp             EETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SS-CSSEEEEEE-ETTEEEEEE
T ss_pred             EeCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe-CC-CCCceEEEE-ECCEEEEec
Confidence            887643 22333 22234578999998654 55555667889999987543322221 11 123566777 355666676


Q ss_pred             eCCCcEEEEeCCCceeeee
Q psy15421        289 YDDFNCNVWDSMKTERAGI  307 (340)
Q Consensus       289 ~~d~~i~iw~~~~~~~~~~  307 (340)
                      ...+.|..++..+++....
T Consensus       263 ~~~~~V~~~~~~~G~~~~~  281 (349)
T 3v64_C          263 WHTKSINSANKFTGKNQEI  281 (349)
T ss_dssp             TTTTEEEEEETTTCCSCEE
T ss_pred             CCCCeEEEEEccCCCccEE
Confidence            6778888888555544333

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.44  E-value=8.4e-06  Score=77.28  Aligned_cols=230  Identities=11%  Similarity=0.057  Sum_probs=127.5

Q ss_pred             cEEEEEEcCCCCeEEEEeC-CCeEEEEeCCCCCeeEEeeCCC-CcEEEEEECCCCCEEEEEe-CC-----CeEEEEEccC
Q psy15421         57 KIYAMHWGSDSRNLVSASQ-DGKLIVWDSYTTNKVHAIPLRS-SWVMTCAYAPSGSFVACGG-LD-----NICSIYSLKT  128 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~-~~i~~v~~~~~~~~l~~~~-~d-----~~v~i~~~~~  128 (340)
                      -..++++..++++++.||. +..+.+||..+.+....-..+. ..-.+++..+++++++.|+ .+     +.+.+||..+
T Consensus       244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            3445677789999999984 5689999987765433222221 2223455667899999998 34     5688899865


Q ss_pred             CCCceEEEEe---ecCCCcceEEEEE-cCCCeEEEEeC---------CCeEEEEECCCCceEEEEecCCC---------C
Q psy15421        129 REGNVRVSRE---LPGHTGYLSCCRF-LDDNQIVTSSG---------DMSCALWDIETGQQCASFIGHTG---------D  186 (340)
Q Consensus       129 ~~~~~~~~~~---~~~~~~~v~~~~~-~~~~~l~~~~~---------d~~v~iwd~~~~~~~~~~~~~~~---------~  186 (340)
                      ..  +.....   .+.....-. ..+ .++..++.++.         ...+..||..++.-......+..         .
T Consensus       324 ~~--W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~  400 (656)
T 1k3i_A          324 KT--WTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMC  400 (656)
T ss_dssp             TE--EEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBT
T ss_pred             Cc--ceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCC
Confidence            32  211100   000000000 001 11222333332         34678899887654332222211         2


Q ss_pred             eEEEEEc-CCCCEEEEEeCCC-----------cEEEEECCCCeeeeEe--cCCCCC-eEEEEEecCCCEEEEEeCC----
Q psy15421        187 VMSLSLA-PDMRTFVSGACDA-----------SAKLWDIRDGSCKQTF--PGHESD-INAVTFFPNGWAFATGSDD----  247 (340)
Q Consensus       187 v~~~~~~-~~~~~~~sg~~dg-----------~i~~wd~~~~~~~~~~--~~h~~~-v~~v~~~~~~~~l~s~s~d----  247 (340)
                      -.++.+. .++++++.|+.++           .|.+||..+..-....  ..+..+ -.+.+..|+++.++.|+.+    
T Consensus       401 ~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~  480 (656)
T 1k3i_A          401 GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP  480 (656)
T ss_dssp             CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCT
T ss_pred             CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcC
Confidence            2344443 3677888887543           6778888766533222  112222 2345667899999999865    


Q ss_pred             -------CcEEEEeCcCCcEEEEeec-CCcccceEEEEEcCCCcEEEEEeC
Q psy15421        248 -------ATCRLFDIRADQELAMYSH-DNIICGITSVAFSRSGRLLLAGYD  290 (340)
Q Consensus       248 -------~~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~g~~  290 (340)
                             ..+.+||..+.+=. .... ......-.++.+.|++++++.|+.
T Consensus       481 ~~~~~~~~~v~~ydp~t~~W~-~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          481 FEDSTPVFTPEIYVPEQDTFY-KQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             TCCCSBCCCCEEEEGGGTEEE-ECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cCCCCcccceEEEcCCCCcee-ecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                   46899998764321 1111 111112334567899999999985

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.39  E-value=0.00065  Score=60.76  Aligned_cols=237  Identities=7%  Similarity=-0.014  Sum_probs=133.2

Q ss_pred             cEEEEEEcC-CCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC----C-eEEEEEccCCC
Q psy15421         57 KIYAMHWGS-DSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD----N-ICSIYSLKTRE  130 (340)
Q Consensus        57 ~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d----~-~v~i~~~~~~~  130 (340)
                      .-..++++| ++..|..+...+.|+.+|..++... .+.........+++++++++|+.+...    . .+...+.....
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            346889998 3555555555588999998765533 333344557889999999966666542    1 23333322111


Q ss_pred             CceEEEEeecCCCcceEEEEEcC-CCeEE-EEeCCCeEEEEECCCCceEEEEe-cCCCCeEEEEEcCCCC-EEEEEeCCC
Q psy15421        131 GNVRVSRELPGHTGYLSCCRFLD-DNQIV-TSSGDMSCALWDIETGQQCASFI-GHTGDVMSLSLAPDMR-TFVSGACDA  206 (340)
Q Consensus       131 ~~~~~~~~~~~~~~~v~~~~~~~-~~~l~-~~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~sg~~dg  206 (340)
                      ........ ..|.   ..+.+.+ ++.|. +-..++.|..++...+....... ........++++|+++ ++++-...+
T Consensus       217 ~~~~~l~~-~~~p---~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~  292 (430)
T 3tc9_A          217 KVITELTK-GQNC---NGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQH  292 (430)
T ss_dssp             CSEEEEEE-CSSC---CCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTT
T ss_pred             eeeeeecc-CCCc---eEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCC
Confidence            11111111 1222   2334555 55554 44467889999998665422222 1223578999999999 455556788


Q ss_pred             cEEEEECCC--Cee--eeEecCC---------------CCCeE-EEEEe--------cCCCEEEEEeCCCcEEEEeCcCC
Q psy15421        207 SAKLWDIRD--GSC--KQTFPGH---------------ESDIN-AVTFF--------PNGWAFATGSDDATCRLFDIRAD  258 (340)
Q Consensus       207 ~i~~wd~~~--~~~--~~~~~~h---------------~~~v~-~v~~~--------~~~~~l~s~s~d~~i~iwd~~~~  258 (340)
                      .|..++...  +..  ...+.+.               -.... .+++.        +++..+++=...+.|+.++. .+
T Consensus       293 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G  371 (430)
T 3tc9_A          293 YILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG  371 (430)
T ss_dssp             EEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS
T ss_pred             EEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC
Confidence            999987642  221  1111111               01123 45553        34666666666778888874 33


Q ss_pred             cEEEEeec---------CC------cccceEEEEEcC-CCcEEEEEeCCCcEEEEeC
Q psy15421        259 QELAMYSH---------DN------IICGITSVAFSR-SGRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       259 ~~~~~~~~---------~~------~~~~i~~~~~s~-~~~~l~~g~~d~~i~iw~~  299 (340)
                      ........         ..      .......++++| ++.++++-..+..|+.++.
T Consensus       372 ~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          372 RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            33222221         00      112478899999 4666666666777877764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.38  E-value=0.00052  Score=61.40  Aligned_cols=231  Identities=8%  Similarity=0.059  Sum_probs=132.1

Q ss_pred             EEEEEECC-CCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCe-EEEEeC-CC----eEEEEECC
Q psy15421        100 VMTCAYAP-SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSSG-DM----SCALWDIE  172 (340)
Q Consensus       100 i~~v~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~-d~----~v~iwd~~  172 (340)
                      ...++++| ++..|+.+...+.|+.+++..+  ....   +.........+.+.+++. ++.+.. ++    .+...+..
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~--~v~~---~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE--YVST---VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTT--EEEE---EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCC--EEEE---EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence            45778888 4556666665577777776543  2211   112233345567766554 554443 22    23334432


Q ss_pred             CCceE--EEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeeeEec-CCCCCeEEEEEecCCC-EEEEEeCC
Q psy15421        173 TGQQC--ASFIGHTGDVMSLSLAP-DMRTFVSGACDASAKLWDIRDGSCKQTFP-GHESDINAVTFFPNGW-AFATGSDD  247 (340)
Q Consensus       173 ~~~~~--~~~~~~~~~v~~~~~~~-~~~~~~sg~~dg~i~~wd~~~~~~~~~~~-~h~~~v~~v~~~~~~~-~l~s~s~d  247 (340)
                       +...  ..+. .......++++| ++.++++-..++.|..++...+....... +.....+.++|+|+|+ .+++-...
T Consensus       214 -g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~  291 (430)
T 3tc9_A          214 -SGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ  291 (430)
T ss_dssp             -GTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred             -Cceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence             2211  2222 223467888999 67777777778999999988765422222 1223467899999998 55566667


Q ss_pred             CcEEEEeCcCC-cEE---EEee-c---CC---------cccceE-EEEEc--------CCCcEEEEEeCCCcEEEEeCCC
Q psy15421        248 ATCRLFDIRAD-QEL---AMYS-H---DN---------IICGIT-SVAFS--------RSGRLLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       248 ~~i~iwd~~~~-~~~---~~~~-~---~~---------~~~~i~-~~~~s--------~~~~~l~~g~~d~~i~iw~~~~  301 (340)
                      +.|..++.... ..+   ..+. .   ..         ...... .++..        +++.++++=..+..|+.++ .+
T Consensus       292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~  370 (430)
T 3tc9_A          292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQ  370 (430)
T ss_dssp             TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TT
T ss_pred             CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CC
Confidence            88999886532 111   1111 1   00         011233 44543        4567777767778899888 44


Q ss_pred             ceeeeeeccC------------------CcceEEEEECC-CCCEEEEeeCCCcEEec
Q psy15421        302 TERAGILAGH------------------DNRVSCLGVTE-DGMAVATGSWDSFLRIW  339 (340)
Q Consensus       302 ~~~~~~~~~h------------------~~~i~~~~~s~-d~~~l~s~s~D~~i~iW  339 (340)
                      +.... +.+.                  -..-..++++| ++.++++-..+..|+..
T Consensus       371 G~v~~-~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i  426 (430)
T 3tc9_A          371 GRVTT-FAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI  426 (430)
T ss_dssp             SEEEE-EEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             CcEEE-EEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence            54322 2211                  12468899999 57777777667777754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.38  E-value=0.001  Score=58.53  Aligned_cols=241  Identities=8%  Similarity=-0.007  Sum_probs=136.3

Q ss_pred             EEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEE-eCCCeEEEEEccCCCCceEEEE
Q psy15421         59 YAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACG-GLDNICSIYSLKTREGNVRVSR  137 (340)
Q Consensus        59 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~  137 (340)
                      .+.+..++ .+|+ .+....|+..++.......... .......++|.+.+..|+.. ...+.|..+++....  ...  
T Consensus        80 ~C~~~~~~-~~l~-~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~~--  152 (386)
T 3v65_B           80 SCKALGPE-PVLL-FANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VEE--  152 (386)
T ss_dssp             CEEECSSC-CEEE-EECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC--EEE--
T ss_pred             eECCcccc-ceeE-eecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC--cEE--
Confidence            34444443 3333 3444678888887655433333 23457789999766555544 456777777765432  111  


Q ss_pred             eecCCCcceEEEEEc-CCCe-EEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEE-EEeCC-CcEEEEEC
Q psy15421        138 ELPGHTGYLSCCRFL-DDNQ-IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV-SGACD-ASAKLWDI  213 (340)
Q Consensus       138 ~~~~~~~~v~~~~~~-~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-sg~~d-g~i~~wd~  213 (340)
                      .+.........+.+. ..+. +++-...+.|.+.++........+.........+++.|.+..++ +-... +.|..+++
T Consensus       153 ~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~  232 (386)
T 3v65_B          153 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  232 (386)
T ss_dssp             EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence            111111112223343 2344 44555577888888865433222333335688999998766554 44444 78888887


Q ss_pred             CCCeeeeEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCC
Q psy15421        214 RDGSCKQTFPGHESDINAVTFFPNG-WAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDF  292 (340)
Q Consensus       214 ~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~  292 (340)
                      ................+.|+++|++ ..+++=+..+.|..+|+.......... .. ......+++ ..+.++++-...+
T Consensus       233 dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~-~~~P~giav-~~~~ly~td~~~~  309 (386)
T 3v65_B          233 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QG-LPHPFAITV-FEDSLYWTDWHTK  309 (386)
T ss_dssp             TSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC-SS-CSSEEEEEE-ETTEEEEEETTTT
T ss_pred             CCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE-CC-CCCceEEEE-ECCEEEEeeCCCC
Confidence            6433222223333457899999764 455565667889999987543332222 11 123566777 3556677777788


Q ss_pred             cEEEEeCCCceeeeeec
Q psy15421        293 NCNVWDSMKTERAGILA  309 (340)
Q Consensus       293 ~i~iw~~~~~~~~~~~~  309 (340)
                      .|..++..+++....+.
T Consensus       310 ~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          310 SINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EEEEEETTTCCSCEEEE
T ss_pred             eEEEEECCCCcceEEEc
Confidence            89888866665544443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.35  E-value=0.00056  Score=61.20  Aligned_cols=233  Identities=10%  Similarity=0.080  Sum_probs=135.4

Q ss_pred             EEEEEECCC--CCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCC----e-EEEEECC
Q psy15421        100 VMTCAYAPS--GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDM----S-CALWDIE  172 (340)
Q Consensus       100 i~~v~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~----~-v~iwd~~  172 (340)
                      ...++++|+  +..|+.+...+.|+.++...+.  .   ..+.........+.+.+++.|..+...+    . +...+..
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~--v---~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--V---DIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTE--E---EEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCE--E---EEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence            457889984  4445455444778888875432  1   1222233345567776665555544321    2 3333332


Q ss_pred             CCceEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeeeEe-c-CCCCCeEEEEEecCCC-EEEEEeCCC
Q psy15421        173 TGQQCASFIGHTGDVMSLSLAP-DMRTFVSGACDASAKLWDIRDGSCKQTF-P-GHESDINAVTFFPNGW-AFATGSDDA  248 (340)
Q Consensus       173 ~~~~~~~~~~~~~~v~~~~~~~-~~~~~~sg~~dg~i~~wd~~~~~~~~~~-~-~h~~~v~~v~~~~~~~-~l~s~s~d~  248 (340)
                      .+...............++++| ++.++++-..++.|..+|..++.....+ . +.......++|+|++. .+++-...+
T Consensus       216 ~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~  295 (433)
T 4hw6_A          216 SGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH  295 (433)
T ss_dssp             GTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred             CCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence            2211111112234466788999 6776666667889999998877652222 1 1122234799999998 555556678


Q ss_pred             cEEEEeCcC--CcE--EEEe-ec---C---------CcccceEEEEE---------cCCCcEEEEEeCCCcEEEEeCCCc
Q psy15421        249 TCRLFDIRA--DQE--LAMY-SH---D---------NIICGITSVAF---------SRSGRLLLAGYDDFNCNVWDSMKT  302 (340)
Q Consensus       249 ~i~iwd~~~--~~~--~~~~-~~---~---------~~~~~i~~~~~---------s~~~~~l~~g~~d~~i~iw~~~~~  302 (340)
                      .|+.++...  ...  ...+ ..   .         ........+++         .+++.++++-..+..|+.++. ++
T Consensus       296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G  374 (433)
T 4hw6_A          296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG  374 (433)
T ss_dssp             EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred             EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence            899988652  211  0111 11   0         01123677899         788888888778889999984 55


Q ss_pred             eeeeeeccC------------------CcceEEEEEC-CCCCEEEEeeCCCcEEec
Q psy15421        303 ERAGILAGH------------------DNRVSCLGVT-EDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       303 ~~~~~~~~h------------------~~~i~~~~~s-~d~~~l~s~s~D~~i~iW  339 (340)
                      ... .+.+.                  -..-..++++ ++|.++++-..+..|+..
T Consensus       375 ~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i  429 (433)
T 4hw6_A          375 RVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI  429 (433)
T ss_dssp             EEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             CEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence            332 22211                  1236789999 788888877777788764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.31  E-value=0.001  Score=59.43  Aligned_cols=237  Identities=12%  Similarity=0.088  Sum_probs=134.2

Q ss_pred             cEEEEEEcCC--CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC---Ce-EEEEEccCCC
Q psy15421         57 KIYAMHWGSD--SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD---NI-CSIYSLKTRE  130 (340)
Q Consensus        57 ~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d---~~-v~i~~~~~~~  130 (340)
                      .-..++|+|+  +..|..+...+.|+.+|..++... .+.........++++++++++++....   .. +...+.....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~-~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD-IKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE-EECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE-EeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            3468999985  344444444489999998766543 333344557899999999954443311   12 2222221111


Q ss_pred             CceEEEEeecCCCcceEEEEEcC-CCeEE-EEeCCCeEEEEECCCCceEEEEecC--CCCeEEEEEcCCCC-EEEEEeCC
Q psy15421        131 GNVRVSRELPGHTGYLSCCRFLD-DNQIV-TSSGDMSCALWDIETGQQCASFIGH--TGDVMSLSLAPDMR-TFVSGACD  205 (340)
Q Consensus       131 ~~~~~~~~~~~~~~~v~~~~~~~-~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~-~~~sg~~d  205 (340)
                      ........+ .+   -..+.+.+ ++.|. +-..++.|..+|..++.....+...  ......++++|+++ ++++-...
T Consensus       219 ~~~~~~~~~-~~---P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~  294 (433)
T 4hw6_A          219 TERLSLCNA-RG---AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK  294 (433)
T ss_dssp             CCEEEEEEC-SS---BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred             ecccccccc-CC---CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence            100111111 11   12233444 55554 4445788999999877653333221  22235799999998 45555567


Q ss_pred             CcEEEEECC--CCee--eeEecCC---------------CCCeEEEEE---------ecCCCEEEEEeCCCcEEEEeCcC
Q psy15421        206 ASAKLWDIR--DGSC--KQTFPGH---------------ESDINAVTF---------FPNGWAFATGSDDATCRLFDIRA  257 (340)
Q Consensus       206 g~i~~wd~~--~~~~--~~~~~~h---------------~~~v~~v~~---------~~~~~~l~s~s~d~~i~iwd~~~  257 (340)
                      +.|..++..  ++..  ...+.+.               -.....+++         .+++..+++=...+.|+.++.. 
T Consensus       295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-  373 (433)
T 4hw6_A          295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-  373 (433)
T ss_dssp             TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-
T ss_pred             CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-
Confidence            899998765  2321  1111111               123567899         7778777777778889998853 


Q ss_pred             CcEEEEeecCC---------------cccceEEEEEc-CCCcEEEEEeCCCcEEEEeC
Q psy15421        258 DQELAMYSHDN---------------IICGITSVAFS-RSGRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       258 ~~~~~~~~~~~---------------~~~~i~~~~~s-~~~~~l~~g~~d~~i~iw~~  299 (340)
                      +..........               .......++++ +++.++++=..+..|+.++.
T Consensus       374 G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          374 GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            33322221100               12236789999 67777776667777877764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.31  E-value=0.0012  Score=56.38  Aligned_cols=230  Identities=8%  Similarity=-0.036  Sum_probs=130.8

Q ss_pred             CCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEE-eCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEc-
Q psy15421         75 QDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACG-GLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL-  152 (340)
Q Consensus        75 ~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-  152 (340)
                      ....|+..|+.+.+....+.. -.....++|.+.+..++.+ ...+.|..+++............+.........+.+. 
T Consensus         8 ~~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~   86 (316)
T 1ijq_A            8 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW   86 (316)
T ss_dssp             CBSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             CCCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee
Confidence            335688888877655444433 3456788999876555544 4567888888754100000111122111223344554 


Q ss_pred             CCCe-EEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEE-EEeCC-CcEEEEECCCCeeeeEe-cCCCCC
Q psy15421        153 DDNQ-IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV-SGACD-ASAKLWDIRDGSCKQTF-PGHESD  228 (340)
Q Consensus       153 ~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-sg~~d-g~i~~wd~~~~~~~~~~-~~h~~~  228 (340)
                      .++. +++-...+.|.+.++........+.........+++.|.+..++ +.... +.|...++. +.....+ ...-..
T Consensus        87 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~  165 (316)
T 1ijq_A           87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQW  165 (316)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSC
T ss_pred             cCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCC
Confidence            2444 44556678999999875433222232345688999999666554 43333 788888875 3333333 223345


Q ss_pred             eEEEEEecCCC-EEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeee
Q psy15421        229 INAVTFFPNGW-AFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGI  307 (340)
Q Consensus       229 v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~  307 (340)
                      .+.++++|++. .+++-+..+.|..+|+....................+++. .+.++++-...+.|..++..+++....
T Consensus       166 P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~  244 (316)
T 1ijq_A          166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNL  244 (316)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             ceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEE
Confidence            78999998755 4455556778999998754332222211111234566775 466777777788899988666554333

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.27  E-value=0.0019  Score=57.08  Aligned_cols=234  Identities=9%  Similarity=-0.040  Sum_probs=134.1

Q ss_pred             eCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEc
Q psy15421         74 SQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGG-LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL  152 (340)
Q Consensus        74 ~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  152 (340)
                      +....|+..++........+. ....+..++|++.+..|+... ..+.|+.+++............+.........+.+.
T Consensus        89 ~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD  167 (400)
T 3p5b_L           89 TNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  167 (400)
T ss_dssp             EETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEE
T ss_pred             eccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEE
Confidence            344688888887655433333 345678899998666555554 457777777653210000111112122233444443


Q ss_pred             C-CC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEe-C-CCcEEEEECCCCeeeeEecCCCCC
Q psy15421        153 D-DN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGA-C-DASAKLWDIRDGSCKQTFPGHESD  228 (340)
Q Consensus       153 ~-~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~-~-dg~i~~wd~~~~~~~~~~~~h~~~  228 (340)
                      . .+ .+++-...+.|.+.++........+......+..+++.|.+..++... . .+.|...++.-......+...-..
T Consensus       168 ~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~  247 (400)
T 3p5b_L          168 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW  247 (400)
T ss_dssp             TTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSC
T ss_pred             ecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCc
Confidence            2 34 344555678899999876544333333445688999999665555433 2 478888887643322233333356


Q ss_pred             eEEEEEecCCCEE-EEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeee
Q psy15421        229 INAVTFFPNGWAF-ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGI  307 (340)
Q Consensus       229 v~~v~~~~~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~  307 (340)
                      .+.|+++|++..| ++=...+.|..+|+....................+++. .+.++.+-...+.|..++..+++....
T Consensus       248 P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~  326 (400)
T 3p5b_L          248 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNL  326 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEE
T ss_pred             eEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEE
Confidence            7899999865554 45455778999998754433322221112224566663 445666767778899888766655544


Q ss_pred             ec
Q psy15421        308 LA  309 (340)
Q Consensus       308 ~~  309 (340)
                      +.
T Consensus       327 i~  328 (400)
T 3p5b_L          327 LA  328 (400)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.25  E-value=0.0019  Score=56.03  Aligned_cols=189  Identities=6%  Similarity=-0.028  Sum_probs=111.8

Q ss_pred             eEEEEEc-CCCeEE-EEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeeeEe
Q psy15421        146 LSCCRFL-DDNQIV-TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDM-RTFVSGACDASAKLWDIRDGSCKQTF  222 (340)
Q Consensus       146 v~~~~~~-~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~sg~~dg~i~~wd~~~~~~~~~~  222 (340)
                      ...+.|. .++.|. +-...+.|..+++........+.........+++.+.+ .++++-...+.|.+.++........+
T Consensus        75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~  154 (349)
T 3v64_C           75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL  154 (349)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE
Confidence            4556665 345544 44457889999987655333332223456788998754 45556666789999998644333333


Q ss_pred             cCCCCCeEEEEEecC-CCEEEEEeCC-CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEE-EeCCCcEEEEeC
Q psy15421        223 PGHESDINAVTFFPN-GWAFATGSDD-ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLA-GYDDFNCNVWDS  299 (340)
Q Consensus       223 ~~h~~~v~~v~~~~~-~~~l~s~s~d-~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-g~~d~~i~iw~~  299 (340)
                      .......+.++++|. +..+.+-... +.|..+++......... ... ....+.++++|++..|.. -...+.|..++.
T Consensus       155 ~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-~~~-~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~  232 (349)
T 3v64_C          155 WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA-DTH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANL  232 (349)
T ss_dssp             CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC-CSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE-ECC-CCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            333456789999985 5555565555 78888888754332221 111 224688999986665554 445678999986


Q ss_pred             CCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEE
Q psy15421        300 MKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLR  337 (340)
Q Consensus       300 ~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~  337 (340)
                      ........+.........+++ .++..+++-...+.|.
T Consensus       233 dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~  269 (349)
T 3v64_C          233 DGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSIN  269 (349)
T ss_dssp             TSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEE
T ss_pred             CCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEE
Confidence            543333333333445566776 3444455544455554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.24  E-value=0.00027  Score=67.94  Aligned_cols=194  Identities=7%  Similarity=-0.009  Sum_probs=105.9

Q ss_pred             cEEEEEEc-CCCCeEEEE-eCC----CeEEEEeCCCC-CeeE-EeeCCCCcEEEEEECCCCCEEEEEeCCC-----eEEE
Q psy15421         57 KIYAMHWG-SDSRNLVSA-SQD----GKLIVWDSYTT-NKVH-AIPLRSSWVMTCAYAPSGSFVACGGLDN-----ICSI  123 (340)
Q Consensus        57 ~v~~~~~s-~~~~~l~s~-~~d----~~i~iwd~~~~-~~~~-~~~~~~~~i~~v~~~~~~~~l~~~~~d~-----~v~i  123 (340)
                      .+...+|| |||++|+-+ +.+    .+|+++|+.++ +.+. .+.   .....++|+||++.|+....+.     .|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57788999 999987743 323    35999999888 5321 111   1123568999998887776652     4566


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEcCCCe-EEEEe---CCCeEEEEECCCCc-eE--EEEec-CCCCeEEEEEcCC
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSS---GDMSCALWDIETGQ-QC--ASFIG-HTGDVMSLSLAPD  195 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~---~d~~v~iwd~~~~~-~~--~~~~~-~~~~v~~~~~~~~  195 (340)
                      +++.++...-...... ..........+++++. |+..+   ....|.++|+.++. ..  ..+.. ..+...++.|+.+
T Consensus       252 ~~lgt~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g  330 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGT  330 (751)
T ss_dssp             EETTSCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETT
T ss_pred             EECCCCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeC
Confidence            6665432211122111 2223445567777764 44333   24468888987752 22  33322 3344566665555


Q ss_pred             CCEEEEEeCC----CcEEEEECCCCeeeeE-ecCCCC--CeEEEEEecCCCEEEEEeCCCcEE--EEeC
Q psy15421        196 MRTFVSGACD----ASAKLWDIRDGSCKQT-FPGHES--DINAVTFFPNGWAFATGSDDATCR--LFDI  255 (340)
Q Consensus       196 ~~~~~sg~~d----g~i~~wd~~~~~~~~~-~~~h~~--~v~~v~~~~~~~~l~s~s~d~~i~--iwd~  255 (340)
                      +.+++....+    ..|..+|+.++..... +-.+..  .+..+.+. .+..+++...++..+  ++|+
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            5555554443    3566667664222222 223333  34455554 244566777777654  4554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.24  E-value=0.0041  Score=59.82  Aligned_cols=233  Identities=9%  Similarity=-0.040  Sum_probs=129.2

Q ss_pred             eCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEE-EEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEc
Q psy15421         74 SQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVA-CGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL  152 (340)
Q Consensus        74 ~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  152 (340)
                      +....|+..++...+....+. ....+..++|.+....|+ +-...+.|+.+++............+.........+.+.
T Consensus       401 an~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD  479 (791)
T 3m0c_C          401 TNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  479 (791)
T ss_dssp             ECBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             ccccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence            444567777776554333333 335567889988555544 444557777777753211001111122122223334443


Q ss_pred             C-C-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEe-CC-CcEEEEECCCCeeeeEecCCCCC
Q psy15421        153 D-D-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGA-CD-ASAKLWDIRDGSCKQTFPGHESD  228 (340)
Q Consensus       153 ~-~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~-~d-g~i~~wd~~~~~~~~~~~~h~~~  228 (340)
                      . . ..+++-...+.|.+.++........+.........|++.|....|+... .. +.|...++.-......+...-..
T Consensus       480 ~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~  559 (791)
T 3m0c_C          480 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW  559 (791)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC
T ss_pred             ecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCC
Confidence            2 3 3455556678999999975543333333445688999999755554433 33 78888888643333333333356


Q ss_pred             eEEEEEecCCC-EEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeee
Q psy15421        229 INAVTFFPNGW-AFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGI  307 (340)
Q Consensus       229 v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~  307 (340)
                      .+.|++++.+. ++++=.....|...++....................+++.. +.++++-...+.|...+..+++....
T Consensus       560 P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~  638 (791)
T 3m0c_C          560 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNL  638 (791)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             ceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEE
Confidence            88999997654 44554556789999987554433332211112244666643 35555656677888888666654444


Q ss_pred             e
Q psy15421        308 L  308 (340)
Q Consensus       308 ~  308 (340)
                      +
T Consensus       639 l  639 (791)
T 3m0c_C          639 L  639 (791)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.23  E-value=0.0023  Score=56.34  Aligned_cols=190  Identities=6%  Similarity=-0.044  Sum_probs=112.0

Q ss_pred             eEEEEEc-CCCeEE-EEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeeeEe
Q psy15421        146 LSCCRFL-DDNQIV-TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR-TFVSGACDASAKLWDIRDGSCKQTF  222 (340)
Q Consensus       146 v~~~~~~-~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~sg~~dg~i~~wd~~~~~~~~~~  222 (340)
                      ...+.|. .++.|. +-...+.|..+++........+.........+++.+.+. ++++-...+.|.+.++........+
T Consensus       118 ~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~  197 (386)
T 3v65_B          118 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL  197 (386)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE
T ss_pred             cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee
Confidence            4556665 345544 444578899999876553333332233466788887544 4556666788988887644333333


Q ss_pred             cCCCCCeEEEEEecCCC-EEEEEeCC-CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEE-EEeCCCcEEEEeC
Q psy15421        223 PGHESDINAVTFFPNGW-AFATGSDD-ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLL-AGYDDFNCNVWDS  299 (340)
Q Consensus       223 ~~h~~~v~~v~~~~~~~-~l~s~s~d-~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~g~~d~~i~iw~~  299 (340)
                      .......+.++++|.+. .+.+-... +.|..+++......... ... ....+.++|+|++..|. +=...+.|..++.
T Consensus       198 ~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-~~~-~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~  275 (386)
T 3v65_B          198 WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA-DTH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANL  275 (386)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSS-CSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred             cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE-ECC-CCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            33335678999998654 45554445 77888888754332222 112 22368899998665554 4445678999986


Q ss_pred             CCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        300 MKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       300 ~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      ........+.........+++ .++..+++-...+.|..
T Consensus       276 dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~  313 (386)
T 3v65_B          276 DGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINS  313 (386)
T ss_dssp             TSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred             CCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEE
Confidence            543333333333445566777 34445555555555544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.12  E-value=0.00018  Score=69.16  Aligned_cols=190  Identities=13%  Similarity=0.089  Sum_probs=105.8

Q ss_pred             ceEEEEEc-CCCe-EEEE-eCC----CeEEEEECCCC-ceEE-EEecCCCCeEEEEEcCCCCEEEEEeCC-----CcEEE
Q psy15421        145 YLSCCRFL-DDNQ-IVTS-SGD----MSCALWDIETG-QQCA-SFIGHTGDVMSLSLAPDMRTFVSGACD-----ASAKL  210 (340)
Q Consensus       145 ~v~~~~~~-~~~~-l~~~-~~d----~~v~iwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~~sg~~d-----g~i~~  210 (340)
                      .+....|+ +++. ++-+ ..+    ..|.++|+.++ +.+. .+..   ....++|+||++.|+....|     ..|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            45567788 7775 3322 222    35999999988 6321 1111   13467899999877765554     36788


Q ss_pred             EECCCCee--eeEec-CCCCCeEEEEEecCCCEEEEEeC---CCcEEEEeCcCCc-EE--EEeecCCcccceEEEEEcCC
Q psy15421        211 WDIRDGSC--KQTFP-GHESDINAVTFFPNGWAFATGSD---DATCRLFDIRADQ-EL--AMYSHDNIICGITSVAFSRS  281 (340)
Q Consensus       211 wd~~~~~~--~~~~~-~h~~~v~~v~~~~~~~~l~s~s~---d~~i~iwd~~~~~-~~--~~~~~~~~~~~i~~~~~s~~  281 (340)
                      +++.++..  ...+. ........+.|+|||++|+..+.   ...|+++|+.+.. ..  ..+... ......++.|+.+
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~s~~~~~g  330 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR-EKGVRYDVQMHGT  330 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC-CTTCCEEEEEETT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC-CCCceEEEeeeeC
Confidence            88877642  22332 22234567899999998876553   3457888887642 11  222111 1123445555555


Q ss_pred             CcEEEEEeCC----CcEEEEeCCCceeeee-eccCCc--ceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        282 GRLLLAGYDD----FNCNVWDSMKTERAGI-LAGHDN--RVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       282 ~~~l~~g~~d----~~i~iw~~~~~~~~~~-~~~h~~--~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      +.+++....+    ..|..++..+...... +..|..  .+..+.+.. +.++++...|+..+||
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRS-NYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECS-SEEEEEEEETTEEEEE
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEEC-CEEEEEEEeCCEEEEE
Confidence            5555554443    3566666554222222 333433  445555552 3456677778876654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.11  E-value=0.0012  Score=55.97  Aligned_cols=157  Identities=11%  Similarity=0.043  Sum_probs=105.2

Q ss_pred             eEEEEEcC-CCeEEEEe-CCCeEEEEECCCCceEEEEecC-----CC--CeEEEEE---cCCCCEEEEEe----------
Q psy15421        146 LSCCRFLD-DNQIVTSS-GDMSCALWDIETGQQCASFIGH-----TG--DVMSLSL---APDMRTFVSGA----------  203 (340)
Q Consensus       146 v~~~~~~~-~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~-----~~--~v~~~~~---~~~~~~~~sg~----------  203 (340)
                      -.+..|.+ .+.+..++ ..+.|..||...+.........     ..  .+..+.+   .|+++++++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            33456644 45665555 6999999999765433332222     11  3578999   68877776533          


Q ss_pred             ---CCCcEEEEECC---CCeeeeEec--C-----------CCCCeEEEEEecCCCEEEEEeCC-CcEEEEeCcCCcEEEE
Q psy15421        204 ---CDASAKLWDIR---DGSCKQTFP--G-----------HESDINAVTFFPNGWAFATGSDD-ATCRLFDIRADQELAM  263 (340)
Q Consensus       204 ---~dg~i~~wd~~---~~~~~~~~~--~-----------h~~~v~~v~~~~~~~~l~s~s~d-~~i~iwd~~~~~~~~~  263 (340)
                         .+..|..+|+.   +++.+....  .           .....+.+++.++|+.+++++.- +.|...+.........
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~  174 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTF  174 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeee
Confidence               26889999998   776544332  1           11247899999999999999988 8877777664422211


Q ss_pred             e-ec--CCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc
Q psy15421        264 Y-SH--DNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT  302 (340)
Q Consensus       264 ~-~~--~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~  302 (340)
                      + ..  .......+.++++|+|..|++....+.+..+|+.+.
T Consensus       175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            1 11  112345778999999999888877999999997643

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.06  E-value=0.0033  Score=51.64  Aligned_cols=198  Identities=11%  Similarity=0.138  Sum_probs=125.0

Q ss_pred             EeecCCCcceEEEEEcCC-CeEEE-EeCCCeEEEEECCCCceEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy15421        137 RELPGHTGYLSCCRFLDD-NQIVT-SSGDMSCALWDIETGQQCASFIG-HTGDVMSLSLAPDMRTFVSGACDASAKLWDI  213 (340)
Q Consensus       137 ~~~~~~~~~v~~~~~~~~-~~l~~-~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~  213 (340)
                      +.+++-...+..+.+.++ +.|.+ ...++.|...|+. ++....+.- -....-.+++.+++.++++.-.++.+.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            355666667888888754 55554 5668889999998 777666532 2245778888888887777667888999987


Q ss_pred             CCCee---eeEec------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcC---CcEEEEeec-----CCcccceEEE
Q psy15421        214 RDGSC---KQTFP------GHESDINAVTFFPNGWAFATGSDDATCRLFDIRA---DQELAMYSH-----DNIICGITSV  276 (340)
Q Consensus       214 ~~~~~---~~~~~------~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~---~~~~~~~~~-----~~~~~~i~~~  276 (340)
                      .....   .....      ........++++|.+..|.++.......+|.+..   ...+.....     ......+.++
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            65432   12221      1234468999999987776666655555555431   111121111     1122347899


Q ss_pred             EEcCC-CcEEEEEeCCCcEEEEeCCCceeeeeec---cC------CcceEEEEECCCCCEEEEeeCCCcEE
Q psy15421        277 AFSRS-GRLLLAGYDDFNCNVWDSMKTERAGILA---GH------DNRVSCLGVTEDGMAVATGSWDSFLR  337 (340)
Q Consensus       277 ~~s~~-~~~l~~g~~d~~i~iw~~~~~~~~~~~~---~h------~~~i~~~~~s~d~~~l~s~s~D~~i~  337 (340)
                      +++|. +++++.......+..+|. +++.+..+.   +.      ...-..++|.++|+++++ |....++
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y  247 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFY  247 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEE
Confidence            99986 566667777888889985 455544332   21      124578999999986665 5444444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.05  E-value=7.5e-05  Score=71.10  Aligned_cols=233  Identities=9%  Similarity=-0.024  Sum_probs=125.5

Q ss_pred             CCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEc-
Q psy15421         75 QDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGG-LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL-  152 (340)
Q Consensus        75 ~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-  152 (340)
                      ..+.|+..++.+.+....+.. ...+..++|.+.+..|+.+. ..+.|+.+++............+.........+.+. 
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~  462 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  462 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred             CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence            445777777766554333322 23355778888776666554 456788887754100000001111111111223333 


Q ss_pred             CCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEE-EEeCC-CcEEEEECCCCeeeeEe-cCCCCC
Q psy15421        153 DDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV-SGACD-ASAKLWDIRDGSCKQTF-PGHESD  228 (340)
Q Consensus       153 ~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-sg~~d-g~i~~wd~~~~~~~~~~-~~h~~~  228 (340)
                      ..+ .+++-...+.|.+.++........+.........+++.|.+..|+ +-... +.|..+++... ....+ ...-..
T Consensus       463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~  541 (699)
T 1n7d_A          463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQW  541 (699)
T ss_dssp             SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSS
T ss_pred             eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCC
Confidence            233 344445578899999875433222222234567889998655444 43233 77887776532 22222 222234


Q ss_pred             eEEEEEecC-CCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeee
Q psy15421        229 INAVTFFPN-GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGI  307 (340)
Q Consensus       229 v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~  307 (340)
                      .+.|+|+|+ ++++++-+..+.|..+++....................+++..+ .++++....+.|..++..+++.+..
T Consensus       542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~  620 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNL  620 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEEC
T ss_pred             ccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEE
Confidence            678999986 55666666778899999875433332221111112334555544 5666666778999999777776665


Q ss_pred             ecc
Q psy15421        308 LAG  310 (340)
Q Consensus       308 ~~~  310 (340)
                      +..
T Consensus       621 i~~  623 (699)
T 1n7d_A          621 LAE  623 (699)
T ss_dssp             CCT
T ss_pred             eec
Confidence            543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.99  E-value=0.0058  Score=52.13  Aligned_cols=224  Identities=8%  Similarity=-0.055  Sum_probs=125.4

Q ss_pred             CCCeEEEEeCCCCCeeEEee-CCCCcEEEEEECCCCCEE-EEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEc
Q psy15421         75 QDGKLIVWDSYTTNKVHAIP-LRSSWVMTCAYAPSGSFV-ACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL  152 (340)
Q Consensus        75 ~d~~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  152 (340)
                      ....|+..++........+. ..-.....+.|.+.+..| .+-...+.|..+++............   .......+.+.
T Consensus        11 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~---~l~~p~glavd   87 (318)
T 3sov_A           11 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS---GLLSPDGLACD   87 (318)
T ss_dssp             CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE---CCSCCCEEEEE
T ss_pred             ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC---CCCCccEEEEE
Confidence            34678888887653111111 111235678888865544 44445677887877543211111111   11122234443


Q ss_pred             -CCCe-EEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeeeEe-cCCCC
Q psy15421        153 -DDNQ-IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGA--CDASAKLWDIRDGSCKQTF-PGHES  227 (340)
Q Consensus       153 -~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~--~dg~i~~wd~~~~~~~~~~-~~h~~  227 (340)
                       .++. +++-...+.|.++++........+.........+++.|.+..++...  ..+.|...++.- .....+ ...-.
T Consensus        88 ~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~  166 (318)
T 3sov_A           88 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIY  166 (318)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCS
T ss_pred             cCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCC
Confidence             2344 44555678899999875433222223445678999998765555443  357888888753 322222 22234


Q ss_pred             CeEEEEEecCC-CEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceee
Q psy15421        228 DINAVTFFPNG-WAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERA  305 (340)
Q Consensus       228 ~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~  305 (340)
                      ..+.++++|++ +.+.+=+..+.|..+|+.......... .. ......+++.. +.++.+-...+.|..++..+++..
T Consensus       167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~-~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~  242 (318)
T 3sov_A          167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-GS-LPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGL  242 (318)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SC-CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred             CccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec-CC-CCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence            56899999864 455555667889999987533322221 11 22355666653 456666667788888887665543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.94  E-value=0.004  Score=53.31  Aligned_cols=179  Identities=12%  Similarity=0.223  Sum_probs=113.8

Q ss_pred             CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC-------EEE-EEeC--CCcEEEEEC--CCCeeeeEe
Q psy15421        155 NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR-------TFV-SGAC--DASAKLWDI--RDGSCKQTF  222 (340)
Q Consensus       155 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~-sg~~--dg~i~~wd~--~~~~~~~~~  222 (340)
                      ..+++....+-+.+||+ .|+.+..+..  +.++.+.+-|+-.       +++ +-..  +++|.+|++  .++. +..+
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i  116 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSM  116 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEEC
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeec
Confidence            34666677889999999 7888877653  5677887777421       233 3334  689999966  3443 3333


Q ss_pred             cC------CC-CCeEEEEE--ecC-CC-EEEEEeCCCcEEEEeCcC-------CcEEEEeecCCcccceEEEEEcCCCcE
Q psy15421        223 PG------HE-SDINAVTF--FPN-GW-AFATGSDDATCRLFDIRA-------DQELAMYSHDNIICGITSVAFSRSGRL  284 (340)
Q Consensus       223 ~~------h~-~~v~~v~~--~~~-~~-~l~s~s~d~~i~iwd~~~-------~~~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
                      ..      .. ..+..+++  +|. +. +++....+|.+..|++..       .+.+..+...   ..+-.|+..+....
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg---sq~EgcvvDd~~g~  193 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN---SQTEGMAADDEYGR  193 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS---SCEEEEEEETTTTE
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC---CCcceEEEcCCCCe
Confidence            11      11 44566777  664 43 677788889999998832       2333444332   34778899999999


Q ss_pred             EEEEeCCCcEEEEeCC-----Cceeeeeec-cCC-cceEEEEE--CCCCC-EEEEee-CCCcEEecC
Q psy15421        285 LLAGYDDFNCNVWDSM-----KTERAGILA-GHD-NRVSCLGV--TEDGM-AVATGS-WDSFLRIWN  340 (340)
Q Consensus       285 l~~g~~d~~i~iw~~~-----~~~~~~~~~-~h~-~~i~~~~~--s~d~~-~l~s~s-~D~~i~iW~  340 (340)
                      |..+-.+..|..++..     +...+.... +|. ..+..|++  .++++ +|+.++ .+.+..|||
T Consensus       194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence            9999998776666643     234444432 333 36777877  56666 555554 466666664

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.93  E-value=0.0079  Score=51.53  Aligned_cols=195  Identities=12%  Similarity=0.254  Sum_probs=119.7

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCC----CC---EEEEEe-C--CCeEEEEEccCCCCceEE
Q psy15421         66 DSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS----GS---FVACGG-L--DNICSIYSLKTREGNVRV  135 (340)
Q Consensus        66 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~----~~---~l~~~~-~--d~~v~i~~~~~~~~~~~~  135 (340)
                      ...+++.....+-+.++|+ +++.+..++.  ..+..+...|+    |+   ++++.. .  ++++.+|++......+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            3456887888899999999 8888888764  44666666553    22   233333 3  589999988533322222


Q ss_pred             EEee--c--CCCcceEEEEE--cC-CC--eEEEEeCCCeEEEEECC---C----CceEEEEecCCCCeEEEEEcCCCCEE
Q psy15421        136 SREL--P--GHTGYLSCCRF--LD-DN--QIVTSSGDMSCALWDIE---T----GQQCASFIGHTGDVMSLSLAPDMRTF  199 (340)
Q Consensus       136 ~~~~--~--~~~~~v~~~~~--~~-~~--~l~~~~~d~~v~iwd~~---~----~~~~~~~~~~~~~v~~~~~~~~~~~~  199 (340)
                      ....  +  ........+++  .+ .+  +++....++.+..|++.   .    .+.++++. ..+.+-.+...+....+
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~g~L  194 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEYGRL  194 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCCCeE
Confidence            1110  1  11022333333  33 34  35666778999999883   2    23445544 34568888899988899


Q ss_pred             EEEeCCCcEEEEECC-----CCeeeeEec-CCC-CCeEEEEEe--cCCC-EEEEEe-CCCcEEEEeCc-CCcEEEEe
Q psy15421        200 VSGACDASAKLWDIR-----DGSCKQTFP-GHE-SDINAVTFF--PNGW-AFATGS-DDATCRLFDIR-ADQELAMY  264 (340)
Q Consensus       200 ~sg~~dg~i~~wd~~-----~~~~~~~~~-~h~-~~v~~v~~~--~~~~-~l~s~s-~d~~i~iwd~~-~~~~~~~~  264 (340)
                      +.+-.|.-|..++.+     +++.+..+. ++- ..+..|++.  ++++ +|++++ .+.+..+||.. ..+.+..+
T Consensus       195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence            999998777777754     344444442 222 368888885  4444 555444 57799999996 55555555

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.91  E-value=0.0076  Score=50.70  Aligned_cols=227  Identities=17%  Similarity=0.191  Sum_probs=109.9

Q ss_pred             CCeEEEEe-CC-----CeEEEEeCCCCCeeEE--eeCCCCcEEEEEECCCCCEEEEEeCC-----CeEEEEEccCCCC-c
Q psy15421         67 SRNLVSAS-QD-----GKLIVWDSYTTNKVHA--IPLRSSWVMTCAYAPSGSFVACGGLD-----NICSIYSLKTREG-N  132 (340)
Q Consensus        67 ~~~l~s~~-~d-----~~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~~~~~~l~~~~~d-----~~v~i~~~~~~~~-~  132 (340)
                      +..++.|+ .+     ..+.++|..+.+....  ++........+  ..++..++.|+.+     +.+.+||..+... .
T Consensus        15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~   92 (301)
T 2vpj_A           15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV--SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV   92 (301)
T ss_dssp             EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred             CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEE--EECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence            34555555 22     3678888876653221  11111111122  2356777777765     3577888765431 1


Q ss_pred             eEEEEeecCCCcceEEEEEcCCCeEEEEeCC-----CeEEEEECCCCceEE--EEecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        133 VRVSRELPGHTGYLSCCRFLDDNQIVTSSGD-----MSCALWDIETGQQCA--SFIGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       133 ~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                      ......++........+. .++..++.|+.+     ..+.+||+.+++-..  .+....... +++. .+++.++.|+.+
T Consensus        93 W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~  169 (301)
T 2vpj_A           93 WYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA-GLVV-ASGVIYCLGGYD  169 (301)
T ss_dssp             CEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC-EEEE-ETTEEEEECCBC
T ss_pred             eEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc-eEEE-ECCEEEEECCCC
Confidence            332222222222222222 233344555432     368889987765322  211111111 2222 256677777754


Q ss_pred             -----CcEEEEECCCCeeeeE--ecCCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCcCCcEEEEeecCCcccce
Q psy15421        206 -----ASAKLWDIRDGSCKQT--FPGHESDINAVTFFPNGWAFATGSDD-----ATCRLFDIRADQELAMYSHDNIICGI  273 (340)
Q Consensus       206 -----g~i~~wd~~~~~~~~~--~~~h~~~v~~v~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~~~~~~i  273 (340)
                           ..+..||+.+++-...  ++.......++.  -++..++.|+.+     ..+.+||..+.+=...-.........
T Consensus       170 ~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~  247 (301)
T 2vpj_A          170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV  247 (301)
T ss_dssp             SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred             CCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccce
Confidence                 4688899887653221  111111112222  256777888764     46889998765322111111111112


Q ss_pred             EEEEEcCCCcEEEEEeCC-----CcEEEEeCCCc
Q psy15421        274 TSVAFSRSGRLLLAGYDD-----FNCNVWDSMKT  302 (340)
Q Consensus       274 ~~~~~s~~~~~l~~g~~d-----~~i~iw~~~~~  302 (340)
                      .++.+  ++++++.|+.+     ..+.+||..+.
T Consensus       248 ~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          248 GATVL--RGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             EEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             eEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            23333  67888888765     35677886543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.87  E-value=0.0014  Score=55.61  Aligned_cols=155  Identities=10%  Similarity=0.064  Sum_probs=100.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeee-EecC----CCC--CeEEEEE---ecCCCEEEEEe-------
Q psy15421        184 TGDVMSLSLAPDMRTFVSGA-CDASAKLWDIRDGSCKQ-TFPG----HES--DINAVTF---FPNGWAFATGS-------  245 (340)
Q Consensus       184 ~~~v~~~~~~~~~~~~~sg~-~dg~i~~wd~~~~~~~~-~~~~----h~~--~v~~v~~---~~~~~~l~s~s-------  245 (340)
                      ....-+.+|++....|+.++ ..++|..||...+.... .+++    ...  .+..|.+   .|+++.+++..       
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            33455788988666666656 79999999987554332 2332    111  3578999   68887777543       


Q ss_pred             ------CCCcEEEEeCc---CCcEEEEeecCC-----------cccceEEEEEcCCCcEEEEEeCC-CcEEEEeCCCcee
Q psy15421        246 ------DDATCRLFDIR---ADQELAMYSHDN-----------IICGITSVAFSRSGRLLLAGYDD-FNCNVWDSMKTER  304 (340)
Q Consensus       246 ------~d~~i~iwd~~---~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~g~~d-~~i~iw~~~~~~~  304 (340)
                            .+..+..+|+.   +++.+.......           .....+.++..++|+..++++.. +.|...+-. ++.
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~  170 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKT  170 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCC
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCE
Confidence                  26779999998   666554332111           11247899999999999999888 877776643 332


Q ss_pred             eeeec------cCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        305 AGILA------GHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       305 ~~~~~------~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      ...+.      ...-..+.++++|||..|+....++.+...
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~f  211 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAF  211 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEE
T ss_pred             EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEE
Confidence            22221      112236789999999877766557776543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.82  E-value=0.017  Score=52.16  Aligned_cols=235  Identities=12%  Similarity=0.072  Sum_probs=131.2

Q ss_pred             EEEEEECCC-CC-EEEEEeCCCeEEEEEccCCCCceEEEEeecC-CCcceEEEEE-------cCCCe-EEEEeCCC----
Q psy15421        100 VMTCAYAPS-GS-FVACGGLDNICSIYSLKTREGNVRVSRELPG-HTGYLSCCRF-------LDDNQ-IVTSSGDM----  164 (340)
Q Consensus       100 i~~v~~~~~-~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~-~~~~v~~~~~-------~~~~~-l~~~~~d~----  164 (340)
                      ...++|+|. .. ++++-...+.|++.|...+  .+........ .......+.|       .+++. ++.+...+    
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~--~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR--MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTT--EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCC--EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            457889983 44 4444444456666766432  2222211111 1223566777       66653 65555443    


Q ss_pred             ---eEEEEECCC-CceE-----EEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECC-------CCee---------
Q psy15421        165 ---SCALWDIET-GQQC-----ASFIGHTGDVMSLSLAPD-MRTFVSGACDASAKLWDIR-------DGSC---------  218 (340)
Q Consensus       165 ---~v~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~-~~~~~sg~~dg~i~~wd~~-------~~~~---------  218 (340)
                         .|.+.+... +...     ..+.. -.....++++|+ +.++++-..++.|..+|+.       ++..         
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence               255665433 1211     12221 124567889994 5566677788899999987       4543         


Q ss_pred             --eeE-ec-CCCCCeEEEEEecCCCE-EEEEeCCCcEEEEeCcCCc-EE---EEe-ec---CC---------cccceE-E
Q psy15421        219 --KQT-FP-GHESDINAVTFFPNGWA-FATGSDDATCRLFDIRADQ-EL---AMY-SH---DN---------IICGIT-S  275 (340)
Q Consensus       219 --~~~-~~-~h~~~v~~v~~~~~~~~-l~s~s~d~~i~iwd~~~~~-~~---~~~-~~---~~---------~~~~i~-~  275 (340)
                        ... +. +.......++|+|+|.+ +++=+....|+.++..... .+   ..+ ..   ..         ...... .
T Consensus       298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g  377 (496)
T 3kya_A          298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG  377 (496)
T ss_dssp             TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred             cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence              111 11 12334578999999985 5555667788886654211 11   111 11   10         111244 3


Q ss_pred             EEEc-------CCCcEEEEEeCCCcEEEEeCCCceeeeeeccC------------------------CcceEEEEECCC-
Q psy15421        276 VAFS-------RSGRLLLAGYDDFNCNVWDSMKTERAGILAGH------------------------DNRVSCLGVTED-  323 (340)
Q Consensus       276 ~~~s-------~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h------------------------~~~i~~~~~s~d-  323 (340)
                      ++..       +++.++++=..+..|+.++ .++. +.++.+.                        -..-..|++.++ 
T Consensus       378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~  455 (496)
T 3kya_A          378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK  455 (496)
T ss_dssp             EEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred             EEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence            4444       5677777777888999998 4553 3333221                        123578999997 


Q ss_pred             CCEEEEeeCCCcEEec
Q psy15421        324 GMAVATGSWDSFLRIW  339 (340)
Q Consensus       324 ~~~l~s~s~D~~i~iW  339 (340)
                      |.++++=+.+..||.+
T Consensus       456 g~lyVaD~~N~rIrki  471 (496)
T 3kya_A          456 EMFYVHDQVGHTIRTI  471 (496)
T ss_dssp             TEEEEEETTTTEEEEE
T ss_pred             CEEEEEeCCCCEEEEE
Confidence            8877777777888764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.81  E-value=0.023  Score=53.18  Aligned_cols=277  Identities=7%  Similarity=-0.064  Sum_probs=137.8

Q ss_pred             CcEEEEEEcCCCC-eEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC--CeEEEEEccCCCCc
Q psy15421         56 AKIYAMHWGSDSR-NLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD--NICSIYSLKTREGN  132 (340)
Q Consensus        56 ~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d--~~v~i~~~~~~~~~  132 (340)
                      .....+++.+.+. ++++-...+.|.+.+.........+...-.....+++.|.+.+|+.....  ..|...++..  ..
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG--~~  161 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG--SS  161 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS--CS
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC--Cc
Confidence            5678899998554 55566677899999987554333332223345678898876665555543  3444444432  21


Q ss_pred             eEEEEeecCCCcceEEEEEcC-CCeEEEE-eCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q psy15421        133 VRVSRELPGHTGYLSCCRFLD-DNQIVTS-SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKL  210 (340)
Q Consensus       133 ~~~~~~~~~~~~~v~~~~~~~-~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~  210 (340)
                      .....  ...-..-..+.+.. ++.|.-+ ...+.|...|+..........+.......+++..+ ..+.+-...+.|..
T Consensus       162 ~~~l~--~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~  238 (619)
T 3s94_A          162 RFIII--NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILA  238 (619)
T ss_dssp             CEEEE--CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEE
T ss_pred             eEEEE--eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEE
Confidence            11111  11122234455543 3454433 44677888888654332222212233456777655 55556667888999


Q ss_pred             EECCCCeeeeEecCCCCCe---------------------------EEE---------EEecCC--------------CE
Q psy15421        211 WDIRDGSCKQTFPGHESDI---------------------------NAV---------TFFPNG--------------WA  240 (340)
Q Consensus       211 wd~~~~~~~~~~~~h~~~v---------------------------~~v---------~~~~~~--------------~~  240 (340)
                      .|..+++....+.......                           .|+         +..|.|              ..
T Consensus       239 ~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~  318 (619)
T 3s94_A          239 CNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATE  318 (619)
T ss_dssp             EESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSE
T ss_pred             EECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCce
Confidence            9887664332221100000                           111         011111              11


Q ss_pred             EEEEeCCCcEEEEeCcCCcEE-EEeecCCcccceEEEEEcCCC-cEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEE
Q psy15421        241 FATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSG-RLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCL  318 (340)
Q Consensus       241 l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~  318 (340)
                      ++.-+..+.|+..++...... ..+.... ...+.+++|++.+ .++++-...+.|+.++...................+
T Consensus       319 ~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~-l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~Gl  397 (619)
T 3s94_A          319 LLLLARRTDLRRISLDTPDFTDIVLQLED-IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGI  397 (619)
T ss_dssp             EEEEEESSCEEEEESSSTTCCCEECCCSC-CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred             EEEEEcccceEEEecCCCccceeEEeccc-cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCce
Confidence            111222344555555432211 1111111 1236789999854 455555567888888865433333333334566778


Q ss_pred             EECCC-CCEEEEeeCCCcEEe
Q psy15421        319 GVTED-GMAVATGSWDSFLRI  338 (340)
Q Consensus       319 ~~s~d-~~~l~s~s~D~~i~i  338 (340)
                      ++... ++.+++-+..+.|.+
T Consensus       398 AvD~~~~~lY~tD~~~~~I~v  418 (619)
T 3s94_A          398 AVDWVARNLYWTDTGTDRIEV  418 (619)
T ss_dssp             EEETTTTEEEEEETTTTEEEE
T ss_pred             EEecccCcEEEEeCCCCcEEE
Confidence            88764 444444444455543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.80  E-value=0.012  Score=49.98  Aligned_cols=213  Identities=12%  Similarity=-0.007  Sum_probs=117.8

Q ss_pred             CeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC-CCeEE-EEeCCCeEEEEECCC---CceEEEEe-cCCCCeEEEEE
Q psy15421        119 NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD-DNQIV-TSSGDMSCALWDIET---GQQCASFI-GHTGDVMSLSL  192 (340)
Q Consensus       119 ~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~-~~~~d~~v~iwd~~~---~~~~~~~~-~~~~~v~~~~~  192 (340)
                      +.|+..++......    ..++. ......+.|.. ++.+. +-..++.|..+++..   +.....+. .....+..+++
T Consensus        10 ~~I~~i~~~~~~~~----~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav   84 (316)
T 1ijq_A           10 HEVRKMTLDRSEYT----SLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV   84 (316)
T ss_dssp             SSEEEEETTSCCCE----EEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred             CeEEEEECCCcceE----ehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEE
Confidence            44677777654311    11222 22344566654 44444 445578899999875   12222222 22235678999


Q ss_pred             cCCC-CEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCC-EEEEEeCC-CcEEEEeCcCCcEEEEeecCCc
Q psy15421        193 APDM-RTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGW-AFATGSDD-ATCRLFDIRADQELAMYSHDNI  269 (340)
Q Consensus       193 ~~~~-~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~d-~~i~iwd~~~~~~~~~~~~~~~  269 (340)
                      .+.+ +++++-...+.|.+.++........+.........++++|.+. .+.+-... +.|...++....... +.... 
T Consensus        85 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~-~~~~~-  162 (316)
T 1ijq_A           85 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-LVTEN-  162 (316)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE-EECSS-
T ss_pred             eecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE-EEECC-
Confidence            8754 4555656789999999875433333333345678999998554 44454333 688888876443322 21112 


Q ss_pred             ccceEEEEEcCCCcEEEEE-eCCCcEEEEeCCCceeeeeec--cCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        270 ICGITSVAFSRSGRLLLAG-YDDFNCNVWDSMKTERAGILA--GHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       270 ~~~i~~~~~s~~~~~l~~g-~~d~~i~iw~~~~~~~~~~~~--~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      ....+.++++|++..|..+ ...+.|..++...........  ........+++. .+..+++-...+.|...
T Consensus       163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~  234 (316)
T 1ijq_A          163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA  234 (316)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence            2347889999876655544 456789999965322222222  122345566664 34555555555666543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.78  E-value=0.014  Score=49.90  Aligned_cols=226  Identities=12%  Similarity=0.018  Sum_probs=119.5

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEe-ecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCce
Q psy15421         98 SWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRE-LPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQ  176 (340)
Q Consensus        98 ~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~  176 (340)
                      ..+.++.|.+++..++ ++..+.+  |....+......... .......+..+.+.+ +.+..++.++.|.. ....++.
T Consensus        36 ~~~~~v~~~~~~~~~~-~G~~g~i--~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~t  110 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWL-VGVNATL--METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQS  110 (327)
T ss_dssp             SCEEEEEESSSSCEEE-EETTTEE--EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSS
T ss_pred             CcEEEEEECCCCcEEE-EcCCCeE--EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEE-ECCCCCC
Confidence            4578888887777777 4556654  322222222222111 111233566666655 44444455554433 3333332


Q ss_pred             EEEEe---cCCCCeEEEEEcCCCCEEEEEeCCCcEE-EEECCCCeeeeE-ecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q psy15421        177 CASFI---GHTGDVMSLSLAPDMRTFVSGACDASAK-LWDIRDGSCKQT-FPGHESDINAVTFFPNGWAFATGSDDATCR  251 (340)
Q Consensus       177 ~~~~~---~~~~~v~~~~~~~~~~~~~sg~~dg~i~-~wd~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~  251 (340)
                      =....   .+.+.+..+.+.+++..++.+ .+|.|. -.|  .++.-.. ..++...+..+++.|++.+++.+...+..+
T Consensus       111 W~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~  187 (327)
T 2xbg_A          111 WSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYS  187 (327)
T ss_dssp             CEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEE
T ss_pred             ceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEE
Confidence            12211   233457778777666666554 466543 223  2332222 234456788999999988777665433333


Q ss_pred             EEeC--cCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeec----cCCcceEEEEECCCCC
Q psy15421        252 LFDI--RADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA----GHDNRVSCLGVTEDGM  325 (340)
Q Consensus       252 iwd~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~----~h~~~i~~~~~s~d~~  325 (340)
                      -+|-  .+.+.+..    .....+..+++.|++.+++. +.+|.+++.+...++....+.    .+...+..+++.+++.
T Consensus       188 S~d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~  262 (327)
T 2xbg_A          188 TWEPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE  262 (327)
T ss_dssp             EECTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC
T ss_pred             EeCCCCCceeECCC----CCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE
Confidence            3442  22333211    11234788899999877654 467777776322233222221    1234588999998887


Q ss_pred             EEEEeeCCCcEE
Q psy15421        326 AVATGSWDSFLR  337 (340)
Q Consensus       326 ~l~s~s~D~~i~  337 (340)
                      .++.+. ++.|.
T Consensus       263 ~~~~g~-~g~i~  273 (327)
T 2xbg_A          263 VWLAGG-AGALL  273 (327)
T ss_dssp             EEEEES-TTCEE
T ss_pred             EEEEeC-CCeEE
Confidence            777654 66553

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.76  E-value=0.012  Score=48.35  Aligned_cols=202  Identities=13%  Similarity=0.163  Sum_probs=126.1

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEE-EeCCCeEEEEeCCCCCeeEEeeCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVS-ASQDGKLIVWDSYTTNKVHAIPLR-SSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~-~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      +.+.|=.+.+..++|+|++..|++ ...++.|...|.. ++.+..++.. ....-.+++.+++.++++.-.++.+.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            567777778999999998776554 6678889999987 7777777542 245678888999988777667788888888


Q ss_pred             cCCCCceE-EEEeec----CCCcceEEEEEcCCC-eEEEEeCCCeEEEEECC---CCceEEEEe-------cCCCCeEEE
Q psy15421        127 KTREGNVR-VSRELP----GHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIE---TGQQCASFI-------GHTGDVMSL  190 (340)
Q Consensus       127 ~~~~~~~~-~~~~~~----~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~---~~~~~~~~~-------~~~~~v~~~  190 (340)
                      ........ ....++    ........+.|.+.+ .|.++.......+|.+.   ....+..+.       .+...+.++
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            65432111 111111    122335677887654 66665554444555443   111222221       123357899


Q ss_pred             EEcCCCCEEEE-EeCCCcEEEEECCCCeeeeEe--c-CC------CCCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy15421        191 SLAPDMRTFVS-GACDASAKLWDIRDGSCKQTF--P-GH------ESDINAVTFFPNGWAFATGSDDATCRLF  253 (340)
Q Consensus       191 ~~~~~~~~~~s-g~~dg~i~~wd~~~~~~~~~~--~-~h------~~~v~~v~~~~~~~~l~s~s~d~~i~iw  253 (340)
                      +++|....++. ....+.+..+|.+ ++.+..+  . +.      -.....|+|.|+|+.+++ +.-..++.|
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f  249 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF  249 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence            99997665554 5556778889865 5544433  2 11      124679999999986666 555555444

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.76  E-value=0.017  Score=50.06  Aligned_cols=225  Identities=14%  Similarity=0.134  Sum_probs=117.9

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCee--EEee---CCCCcEEEEEECCC---CCEEEEEeC-C-----Ce
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKV--HAIP---LRSSWVMTCAYAPS---GSFVACGGL-D-----NI  120 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~---~~~~~i~~v~~~~~---~~~l~~~~~-d-----~~  120 (340)
                      ...-..++|.|+++++++ ..++.|++++  +++..  ..++   ........++++|+   +..|+.+.. .     +.
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            344579999999986655 5669999998  33321  1121   11345789999998   455444433 2     55


Q ss_pred             EEEEEccCCCC-ce-EEEEeec---CCCcceEEEEEcCCCeEEEEeCC--------------CeEEEEECCCC-------
Q psy15421        121 CSIYSLKTREG-NV-RVSRELP---GHTGYLSCCRFLDDNQIVTSSGD--------------MSCALWDIETG-------  174 (340)
Q Consensus       121 v~i~~~~~~~~-~~-~~~~~~~---~~~~~v~~~~~~~~~~l~~~~~d--------------~~v~iwd~~~~-------  174 (340)
                      |..++.....- .. .+...++   +....-..+.|.+++.|..+.++              +.|.-++....       
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            66666643210 11 1222233   11111235677777765554332              45555555430       


Q ss_pred             -----ceEEEE-ecCCCCeEEEEEcC-CCCEEEEEeCCCc--------EEEEECCCCe------------------eeeE
Q psy15421        175 -----QQCASF-IGHTGDVMSLSLAP-DMRTFVSGACDAS--------AKLWDIRDGS------------------CKQT  221 (340)
Q Consensus       175 -----~~~~~~-~~~~~~v~~~~~~~-~~~~~~sg~~dg~--------i~~wd~~~~~------------------~~~~  221 (340)
                           .....+ .++ .....++|+| ++.++++-...+.        |.+..  .+.                  ....
T Consensus       187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~  263 (352)
T 2ism_A          187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYRDPLYF  263 (352)
T ss_dssp             TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred             cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCcCCeEe
Confidence                 011111 122 2356789999 6666665333332        43332  221                  1222


Q ss_pred             ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcE------EEEeecCCcccceEEEEEcCCCcEEEEEe
Q psy15421        222 FPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQE------LAMYSHDNIICGITSVAFSRSGRLLLAGY  289 (340)
Q Consensus       222 ~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~------~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  289 (340)
                      +..| .....++| .+|..+++....+.|...++.....      ...+.  .....+..+++.|||.++++..
T Consensus       264 ~~~~-~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          264 WPQG-FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--SGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CTTC-CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--ESSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCC-CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec--ccCCCeeEEEECCCCcEEEEEe
Confidence            3222 34567777 4676777666667777777653321      11111  1123578999999998777654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.68  E-value=0.012  Score=49.49  Aligned_cols=215  Identities=13%  Similarity=0.168  Sum_probs=102.3

Q ss_pred             CeEEEEeCCCCCeeEE--eeCCCCcEEEEEECCCCCEEEEEeCC-----CeEEEEEccCCCCceEEEEeecCCCcceEEE
Q psy15421         77 GKLIVWDSYTTNKVHA--IPLRSSWVMTCAYAPSGSFVACGGLD-----NICSIYSLKTREGNVRVSRELPGHTGYLSCC  149 (340)
Q Consensus        77 ~~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~~~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~  149 (340)
                      ..+..+|..+.+....  ++.....-..+.  .++..++.|+.+     +.+.+||..+.  .......++........+
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~  105 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKD--QWTSVANMRDRRSTLGAA  105 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTT--EEEEECCCSSCCBSCEEE
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCC--ceeeCCCCCccccceEEE
Confidence            3577788776543222  111111111222  267777777755     34677776543  232222222211112222


Q ss_pred             EEcCCCeEEEEeCCC-----eEEEEECCCCceEEE--EecCCCCeEEEEEcCCCCEEEEEeCC-------CcEEEEECCC
Q psy15421        150 RFLDDNQIVTSSGDM-----SCALWDIETGQQCAS--FIGHTGDVMSLSLAPDMRTFVSGACD-------ASAKLWDIRD  215 (340)
Q Consensus       150 ~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~sg~~d-------g~i~~wd~~~  215 (340)
                      . .++..++.|+.++     .+.+||+.+++-...  +....... +++. .+++.++.|+.+       ..+..||+.+
T Consensus       106 ~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~  182 (302)
T 2xn4_A          106 V-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATT  182 (302)
T ss_dssp             E-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTT
T ss_pred             E-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCC
Confidence            2 2444455555442     477888877642221  11111111 2222 256667776643       4588899887


Q ss_pred             Ceeee--EecCCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEE
Q psy15421        216 GSCKQ--TFPGHESDINAVTFFPNGWAFATGSDD-----ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAG  288 (340)
Q Consensus       216 ~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g  288 (340)
                      ++-..  .++...... +++. -++..++.|+.+     ..+.+||..+.+=...-........-..+.+  ++++++.|
T Consensus       183 ~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~G  258 (302)
T 2xn4_A          183 NEWTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVG  258 (302)
T ss_dssp             TEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred             CcEEECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEEC
Confidence            65222  122111111 2222 257788888764     3688999876432111111111111122222  67888888


Q ss_pred             eCCC-----cEEEEeCCCc
Q psy15421        289 YDDF-----NCNVWDSMKT  302 (340)
Q Consensus       289 ~~d~-----~i~iw~~~~~  302 (340)
                      +.++     .+.+||..+.
T Consensus       259 G~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          259 GDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             CBCSSSBCCCEEEEETTTT
T ss_pred             CcCCCcccccEEEEcCCCC
Confidence            7653     4788887654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.67  E-value=0.03  Score=50.60  Aligned_cols=241  Identities=6%  Similarity=0.005  Sum_probs=137.5

Q ss_pred             EEEEEEcCC--CCeEEEEeCCCeEEEEeCCCCCeeEEeeCC---CCcEEEEEE-------CCCCCEEEEEeCCC-----e
Q psy15421         58 IYAMHWGSD--SRNLVSASQDGKLIVWDSYTTNKVHAIPLR---SSWVMTCAY-------APSGSFVACGGLDN-----I  120 (340)
Q Consensus        58 v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~i~~v~~-------~~~~~~l~~~~~d~-----~  120 (340)
                      -..|+|+|.  ++++++-...+.|++.|..++.........   -.....++|       ++++.+|+.+...+     .
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            468999983  445555555577888998776654433321   124788999       99999766666554     2


Q ss_pred             --EEEEEccCCCCce------EEEEeecCCCcceEEEEEcC-CCe-EEEEeCCCeEEEEECC-------CCce-------
Q psy15421        121 --CSIYSLKTREGNV------RVSRELPGHTGYLSCCRFLD-DNQ-IVTSSGDMSCALWDIE-------TGQQ-------  176 (340)
Q Consensus       121 --v~i~~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~d~~v~iwd~~-------~~~~-------  176 (340)
                        +.+.+... .+..      ...... .|..   .+...+ ++. +++-..++.|..+|+.       ++..       
T Consensus       221 ~~V~~i~r~~-~G~~~~~~~~~~v~~~-~~p~---giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~  295 (496)
T 3kya_A          221 PSVYIIKRNA-DGTFDDRSDIQLIAAY-KQCN---GATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN  295 (496)
T ss_dssp             EEEEEEECCT-TSCCSTTSCEEEEEEE-SCCC---CEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred             ceEEEEecCC-CCceeecccceeeccC-CCce---EEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence              44444222 1121      111121 2222   233444 445 4455568889999997       4443       


Q ss_pred             ----EEEEe--cCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEC--CCCeee--eEecC------CC---------CCeE
Q psy15421        177 ----CASFI--GHTGDVMSLSLAPDMRT-FVSGACDASAKLWDI--RDGSCK--QTFPG------HE---------SDIN  230 (340)
Q Consensus       177 ----~~~~~--~~~~~v~~~~~~~~~~~-~~sg~~dg~i~~wd~--~~~~~~--~~~~~------h~---------~~v~  230 (340)
                          ...+.  +.......++|+|+++. +++=...+.|+.++.  ..+...  ..+.+      ..         ....
T Consensus       296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~  375 (496)
T 3kya_A          296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC  375 (496)
T ss_dssp             CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred             cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence                12222  22344689999999995 555566788988654  333210  11211      10         1233


Q ss_pred             -EEEEe-------cCCCEEEEEeCCCcEEEEeCcCCcEEEEeecC---------------C------cccceEEEEEcCC
Q psy15421        231 -AVTFF-------PNGWAFATGSDDATCRLFDIRADQELAMYSHD---------------N------IICGITSVAFSRS  281 (340)
Q Consensus       231 -~v~~~-------~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~---------------~------~~~~i~~~~~s~~  281 (340)
                       .++..       +++.++++=.....|+.++. .+.........               .      .......++++++
T Consensus       376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~  454 (496)
T 3kya_A          376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV  454 (496)
T ss_dssp             EEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred             EEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence             45554       45667777777888998884 33322221110               0      1123678999996


Q ss_pred             -CcEEEEEeCCCcEEEEeCCCcee
Q psy15421        282 -GRLLLAGYDDFNCNVWDSMKTER  304 (340)
Q Consensus       282 -~~~l~~g~~d~~i~iw~~~~~~~  304 (340)
                       +.++++=..+..|+.++......
T Consensus       455 ~g~lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          455 KEMFYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             TTEEEEEETTTTEEEEEEECCCC-
T ss_pred             CCEEEEEeCCCCEEEEEECCCCcc
Confidence             77777777788899888654433

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.63  E-value=0.022  Score=47.94  Aligned_cols=222  Identities=9%  Similarity=0.076  Sum_probs=108.7

Q ss_pred             eEEEEeC--CCeEEEEeCCCCCeeEE--eeCCCCcEEEEEECCCCCEEEEEeCC----CeEEEEEccCCCCceEEEEeec
Q psy15421         69 NLVSASQ--DGKLIVWDSYTTNKVHA--IPLRSSWVMTCAYAPSGSFVACGGLD----NICSIYSLKTREGNVRVSRELP  140 (340)
Q Consensus        69 ~l~s~~~--d~~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~~  140 (340)
                      +++.||.  ...+.+||..+.+....  ++........+.  .++.+++.|+.+    +.+.+||..+.  .......++
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~--~W~~~~~~p   89 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKD--SWYSKLGPP   89 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTT--EEEEEECCS
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCC--eEEECCCCC
Confidence            4445554  35688888877653322  111111112222  366777778765    56777777543  233222232


Q ss_pred             CCCcceEEEEEcCCCeEEEEeCC------CeEEEEECCCCceEEE--EecCCCCeEEEEEcCCCCEEEEEeC--------
Q psy15421        141 GHTGYLSCCRFLDDNQIVTSSGD------MSCALWDIETGQQCAS--FIGHTGDVMSLSLAPDMRTFVSGAC--------  204 (340)
Q Consensus       141 ~~~~~v~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~sg~~--------  204 (340)
                      ........+. .++..++.|+.+      ..+.+||+.+++-...  +....... +++. .++++++.|+.        
T Consensus        90 ~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~  166 (306)
T 3ii7_A           90 TPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVE-ANGLIYVCGGSLGNNVSGR  166 (306)
T ss_dssp             SCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCEESCTTTCE
T ss_pred             ccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEE-ECCEEEEECCCCCCCCccc
Confidence            2121122222 234445555544      4588999887643221  11111111 2222 25666666664        


Q ss_pred             -CCcEEEEECCCCeeee--EecCCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCcCCcEEEEee-cCCcccceEE
Q psy15421        205 -DASAKLWDIRDGSCKQ--TFPGHESDINAVTFFPNGWAFATGSDD-----ATCRLFDIRADQELAMYS-HDNIICGITS  275 (340)
Q Consensus       205 -dg~i~~wd~~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~-~~~~~~~i~~  275 (340)
                       -..+..||+.+.+-..  .++.....- +++.. +++.++.|+.+     ..+.+||..+.+= .... .........+
T Consensus       167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~  243 (306)
T 3ii7_A          167 VLNSCEVYDPATETWTELCPMIEARKNH-GLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEW-KMVSPMPWKGVTVKC  243 (306)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEE-EECCCCSCCBSCCEE
T ss_pred             ccceEEEeCCCCCeEEECCCccchhhcc-eEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcE-EECCCCCCCccceeE
Confidence             3458899988764221  111111111 22222 56777777654     3578888876431 1111 1111112233


Q ss_pred             EEEcCCCcEEEEEeCC-----CcEEEEeCCCc
Q psy15421        276 VAFSRSGRLLLAGYDD-----FNCNVWDSMKT  302 (340)
Q Consensus       276 ~~~s~~~~~l~~g~~d-----~~i~iw~~~~~  302 (340)
                      +.+  ++++++.|+.+     ..+.+||..+.
T Consensus       244 ~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          244 AAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             EEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             EEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            333  67888888854     46788887653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.61  E-value=0.047  Score=51.17  Aligned_cols=225  Identities=8%  Similarity=-0.043  Sum_probs=130.4

Q ss_pred             eCCCeEEEEeCCCCCeeEEeeCC-CCcEEEEEECCCCCEEEEE-eCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEE
Q psy15421         74 SQDGKLIVWDSYTTNKVHAIPLR-SSWVMTCAYAPSGSFVACG-GLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF  151 (340)
Q Consensus        74 ~~d~~i~iwd~~~~~~~~~~~~~-~~~i~~v~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~  151 (340)
                      +..+.|+.-++.+.+....++.. -..+..++|.+.+..++.+ ..++.|..+++....  ...  .+.........+.+
T Consensus        12 s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~--~~~--v~~~g~~~P~GlAv   87 (628)
T 4a0p_A           12 SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA--LEH--VVEFGLDYPEGMAV   87 (628)
T ss_dssp             EETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEE--EECSSCSCCCEEEE
T ss_pred             EeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC--cEE--EEeCCCCCcceEEE
Confidence            35668888888766544444322 2457789999876665544 456777777765322  111  11111112233444


Q ss_pred             c-CCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeeeEecCCCC
Q psy15421        152 L-DDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGA--CDASAKLWDIRDGSCKQTFPGHES  227 (340)
Q Consensus       152 ~-~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~--~dg~i~~wd~~~~~~~~~~~~h~~  227 (340)
                      . ..+ .+.+-...+.|.+.++........+...-.....+++.|....++...  ..+.|...++.-.. ...+-....
T Consensus        88 D~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~  166 (628)
T 4a0p_A           88 DWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVG  166 (628)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSCS
T ss_pred             EeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCC
Confidence            3 233 345555678899999875433222223445688999998655554433  35678878875433 233322345


Q ss_pred             CeEEEEEecCCC-EEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeee
Q psy15421        228 DINAVTFFPNGW-AFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAG  306 (340)
Q Consensus       228 ~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~  306 (340)
                      ..+.|++++++. .+.+=...+.|...|+............   .....+++.. +.++++-...+.|...|..+++...
T Consensus       167 ~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l---~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~  242 (628)
T 4a0p_A          167 RANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDL---PHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRT  242 (628)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECC---SCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             CcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccC---CCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceE
Confidence            678999999755 4455566788999998754332211111   1245677765 5666666667888888866665433


Q ss_pred             e
Q psy15421        307 I  307 (340)
Q Consensus       307 ~  307 (340)
                      .
T Consensus       243 ~  243 (628)
T 4a0p_A          243 I  243 (628)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.57  E-value=0.026  Score=47.47  Aligned_cols=214  Identities=12%  Similarity=0.143  Sum_probs=101.5

Q ss_pred             CCEEEEEeCC--CeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCC----CeEEEEECCCCceEEE--E
Q psy15421        109 GSFVACGGLD--NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGD----MSCALWDIETGQQCAS--F  180 (340)
Q Consensus       109 ~~~l~~~~~d--~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d----~~v~iwd~~~~~~~~~--~  180 (340)
                      +.+++.|+.+  +.+.+||..+.  .......++.....-..+. .++..++.|+.+    ..+.+||+.+++-...  +
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~   88 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDY--SWTDIRCPFEKRRDAACVF-WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP   88 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTT--EEEECCCCSCCCBSCEEEE-ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred             ceEEEEeCCCCCceEEEecCCCC--CEecCCCCCcccceeEEEE-ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence            3445556543  45777776543  2222222222111112222 234445555543    5688899887643221  1


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeeee--EecCCCCCeEEEEEecCCCEEEEEeC------
Q psy15421        181 IGHTGDVMSLSLAPDMRTFVSGACD------ASAKLWDIRDGSCKQ--TFPGHESDINAVTFFPNGWAFATGSD------  246 (340)
Q Consensus       181 ~~~~~~v~~~~~~~~~~~~~sg~~d------g~i~~wd~~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~s~------  246 (340)
                      .........+.  .++++++.|+.+      ..+.+||..+++-..  .++.....- +++. -+++.++.|+.      
T Consensus        89 p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~  164 (306)
T 3ii7_A           89 PTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVE-ANGLIYVCGGSLGNNVS  164 (306)
T ss_dssp             SSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCEESCTTT
T ss_pred             CccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEE-ECCEEEEECCCCCCCCc
Confidence            11111112222  256677777765      568899988765322  121111111 2222 35677777764      


Q ss_pred             ---CCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCC-----CcEEEEeCCCce--eeeeeccCCcceE
Q psy15421        247 ---DATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD-----FNCNVWDSMKTE--RAGILAGHDNRVS  316 (340)
Q Consensus       247 ---d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-----~~i~iw~~~~~~--~~~~~~~h~~~i~  316 (340)
                         -..+.+||..+.+=...-........-..+.+  ++++++.|+.+     ..+.+||..+..  .+..+........
T Consensus       165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~  242 (306)
T 3ii7_A          165 GRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVK  242 (306)
T ss_dssp             CEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCE
T ss_pred             ccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcccee
Confidence               34588898876532111111111111222233  67788887754     357888876543  2222222112222


Q ss_pred             EEEECCCCCEEEEeeCC
Q psy15421        317 CLGVTEDGMAVATGSWD  333 (340)
Q Consensus       317 ~~~~s~d~~~l~s~s~D  333 (340)
                      ++.+  ++..++.|+.+
T Consensus       243 ~~~~--~~~i~v~GG~~  257 (306)
T 3ii7_A          243 CAAV--GSIVYVLAGFQ  257 (306)
T ss_dssp             EEEE--TTEEEEEECBC
T ss_pred             EEEE--CCEEEEEeCcC
Confidence            3333  66677777755

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.52  E-value=0.033  Score=53.63  Aligned_cols=171  Identities=6%  Similarity=-0.050  Sum_probs=104.6

Q ss_pred             EEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC----eeeeEecCCCCCeEE
Q psy15421        157 IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR-TFVSGACDASAKLWDIRDG----SCKQTFPGHESDINA  231 (340)
Q Consensus       157 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~sg~~dg~i~~wd~~~~----~~~~~~~~h~~~v~~  231 (340)
                      ++..+....|+..++...... .+......+..+++.+... ++++-...+.|+.+++...    .....+.........
T Consensus       397 ~Ll~an~~~Ir~i~l~~~~~~-~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G  475 (791)
T 3m0c_C          397 YLFFTNRHEVRKMTLDRSEYT-SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  475 (791)
T ss_dssp             EEEEECBSSEEEECTTSCCCE-EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             ccccccccceeEeeccCCcce-eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence            344455667888888765433 3333445678999998554 4555556788998888642    222233323345678


Q ss_pred             EEEecCC-CEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEe-CC-CcEEEEeCCCceeeeee
Q psy15421        232 VTFFPNG-WAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY-DD-FNCNVWDSMKTERAGIL  308 (340)
Q Consensus       232 v~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~d-~~i~iw~~~~~~~~~~~  308 (340)
                      |++.+.+ ..+++-...+.|.+.++.......... .. ......++++|.+.+|.... .+ ..|...++.........
T Consensus       476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~-l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv  553 (791)
T 3m0c_C          476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-EN-GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  553 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CT-TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CC-CCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence            9999866 566676778899999988654433332 11 22478999999755554443 33 67888886544333334


Q ss_pred             ccCCcceEEEEECCCCCEEEEe
Q psy15421        309 AGHDNRVSCLGVTEDGMAVATG  330 (340)
Q Consensus       309 ~~h~~~i~~~~~s~d~~~l~s~  330 (340)
                      .......+.|++.+.+..|.-+
T Consensus       554 ~~~l~~P~GLavD~~~~~LYwa  575 (791)
T 3m0c_C          554 TENIQWPNGITLDLLSGRLYWV  575 (791)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEE
T ss_pred             eCCCCCceEEEEecCCCeEEEE
Confidence            4444677889998765554433

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.47  E-value=0.11  Score=52.19  Aligned_cols=276  Identities=12%  Similarity=0.086  Sum_probs=146.9

Q ss_pred             cCcEEEEEEcCC------CCeEEEEeC-CCeEEEEeCCCCCeeEEeeCCC-CcEEE---EEECCCCCEEEEEeCCCeEEE
Q psy15421         55 LAKIYAMHWGSD------SRNLVSASQ-DGKLIVWDSYTTNKVHAIPLRS-SWVMT---CAYAPSGSFVACGGLDNICSI  123 (340)
Q Consensus        55 ~~~v~~~~~s~~------~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~-~~i~~---v~~~~~~~~l~~~~~d~~v~i  123 (340)
                      ..+|.|+++.|.      .++++.|.. |++++|+++.+.+.+....... ....+   +.+ ....||..|-.||.+..
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~~  631 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGALFY  631 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEEE
Confidence            357999999763      367888886 9999999998766665444322 12222   233 34568899999999877


Q ss_pred             EEccCCCCceEEEEe-ecCCCcceEEEEEcC-CCeEEEEeCCCeEEEEECCCCceEEEEecCCCCe-EEEEEcCC--CCE
Q psy15421        124 YSLKTREGNVRVSRE-LPGHTGYLSCCRFLD-DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDV-MSLSLAPD--MRT  198 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~--~~~  198 (340)
                      +.+....+...-.++ .-| +.++....+.. ++.-+.+.++.-..+|.-+ ++....-... ..+ ....|+..  ...
T Consensus       632 ~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~-~~v~~~~~F~se~~~~g  708 (1158)
T 3ei3_A          632 FGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNL-KEVNYMCPLNSDGYPDS  708 (1158)
T ss_dssp             EEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSS-SCCCEEEEECCSSSTTE
T ss_pred             EEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccCh-HHhceEeccCcccCCCc
Confidence            776543333332222 222 23343333332 2233333445554445433 2222111111 122 23334322  123


Q ss_pred             EEEEeCCCcEEEEECCCCe--eeeEecCCCCCeEEEEEecCCCEEEEEeCC-----------------------------
Q psy15421        199 FVSGACDASAKLWDIRDGS--CKQTFPGHESDINAVTFFPNGWAFATGSDD-----------------------------  247 (340)
Q Consensus       199 ~~sg~~dg~i~~wd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d-----------------------------  247 (340)
                      ++ +..++.+++..+..-.  ..+.++ -...+..++++|..+.++.+..+                             
T Consensus       709 ~v-~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  786 (1158)
T 3ei3_A          709 LA-LANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSS  786 (1158)
T ss_dssp             EE-EECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCC
T ss_pred             EE-EEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccc
Confidence            44 3445679988775322  223333 34567788888876655443311                             


Q ss_pred             --------------------CcEEEEeCcCCcEEEEeecCCc--ccceEEEEEcCC-CcEEEEEe----------CCCcE
Q psy15421        248 --------------------ATCRLFDIRADQELAMYSHDNI--ICGITSVAFSRS-GRLLLAGY----------DDFNC  294 (340)
Q Consensus       248 --------------------~~i~iwd~~~~~~~~~~~~~~~--~~~i~~~~~s~~-~~~l~~g~----------~d~~i  294 (340)
                                          ..|++.|-.+.+.+..+..+..  ...+..+.|..+ ..++++|+          ..|.|
T Consensus       787 ~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri  866 (1158)
T 3ei3_A          787 KLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRI  866 (1158)
T ss_dssp             CCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEE
T ss_pred             ccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEE
Confidence                                2356666666655544432222  222444445433 47888887          34789


Q ss_pred             EEEeCCCceeeeeec--cCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        295 NVWDSMKTERAGILA--GHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       295 ~iw~~~~~~~~~~~~--~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .+|+....+ +..+.  ...++|++++-- +| +|+.|- .+.|++|+
T Consensus       867 ~vf~v~~~k-L~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~  910 (1158)
T 3ei3_A          867 VVFQYSDGK-LQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYE  910 (1158)
T ss_dssp             EEEEEETTE-EEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEE
T ss_pred             EEEEEECCE-EEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEE
Confidence            999875433 22221  235788887533 34 455443 57888874

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.46  E-value=0.041  Score=46.83  Aligned_cols=215  Identities=9%  Similarity=0.020  Sum_probs=117.3

Q ss_pred             CCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC-CCeE-EEEeCCCeEEEEECCCCceEE-EEecCCCCeEEEEEcC
Q psy15421        118 DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD-DNQI-VTSSGDMSCALWDIETGQQCA-SFIGHTGDVMSLSLAP  194 (340)
Q Consensus       118 d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l-~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~  194 (340)
                      .+.|+..++..........  +.+ ......+.|.. ++.| .+-...+.|..+++....... .+...-..+..+++.+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~--~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~   88 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIV--VGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW   88 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEE--EEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred             cCeEEEEECCCCceEEEEE--ecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence            4557777776542111111  111 11233455543 3444 444457788889887653211 2222223466888887


Q ss_pred             C-CCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecC-CCEEEEEe-CCCcEEEEeCcCCcEEEEeecCCccc
Q psy15421        195 D-MRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPN-GWAFATGS-DDATCRLFDIRADQELAMYSHDNIIC  271 (340)
Q Consensus       195 ~-~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~  271 (340)
                      . +.++++-...+.|.++++........+.......+.++++|. +..+.+-. ..+.|...++.......... .. ..
T Consensus        89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~-l~  166 (318)
T 3sov_A           89 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-SE-IY  166 (318)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC-SS-CS
T ss_pred             CCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE-CC-CC
Confidence            4 445556667789999998644322223334456789999986 44444442 35788888876433222221 12 22


Q ss_pred             ceEEEEEcCCCcEEEE-EeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        272 GITSVAFSRSGRLLLA-GYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       272 ~i~~~~~s~~~~~l~~-g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      ..+.++++|++..|.. =...+.|..++...........+.......+++..+ ..+.+-...+.|..
T Consensus       167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~  233 (318)
T 3sov_A          167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILA  233 (318)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT-EEEEEETTTTEEEE
T ss_pred             CccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC-EEEEEecCCCeEEE
Confidence            4688999996655554 445778999986533322223323344556666433 34444444455543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.42  E-value=0.056  Score=47.60  Aligned_cols=219  Identities=11%  Similarity=0.006  Sum_probs=122.2

Q ss_pred             EEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC-CCeEE-EEeCCCeEEEEECCCC----ceEEEEecCC
Q psy15421        111 FVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD-DNQIV-TSSGDMSCALWDIETG----QQCASFIGHT  184 (340)
Q Consensus       111 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~-~~~~d~~v~iwd~~~~----~~~~~~~~~~  184 (340)
                      +|+.+. .+.|+..++....  ...  .. ........+.|.. ++.|. +-...+.|..+++...    .....+....
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~--~~~--~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~  158 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSE--YTS--LI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI  158 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCS--CEE--EE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred             eeEEec-cceeEEEccCCcc--eeE--ec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence            444333 4567777765432  111  12 2233455666754 45544 4445678888888652    1222222234


Q ss_pred             CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCC-CEEEEEeC-CCcEEEEeCcCCcEE
Q psy15421        185 GDVMSLSLAP-DMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG-WAFATGSD-DATCRLFDIRADQEL  261 (340)
Q Consensus       185 ~~v~~~~~~~-~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~-d~~i~iwd~~~~~~~  261 (340)
                      ..+..+++.+ .++++++-...+.|.+.++........+.........|+++|.+ ..+.+-.. .+.|...++......
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~  238 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  238 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence            4578899987 45555566678899999987554333343334557899999964 44444423 478888888754433


Q ss_pred             EEeecCCcccceEEEEEcCCCcEEEEEe-CCCcEEEEeCCCceeeeeecc--CCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        262 AMYSHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMKTERAGILAG--HDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       262 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~d~~i~iw~~~~~~~~~~~~~--h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                      .... .. ....+.++++|++..|..+. ....|..++............  .......+++. .+..+++-...+.|..
T Consensus       239 ~~~~-~~-l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~  315 (400)
T 3p5b_L          239 SLVT-EN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFS  315 (400)
T ss_dssp             EEEC-SS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEE
T ss_pred             EEEE-CC-CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEE
Confidence            2221 11 23478899998776665554 567899998654333222222  22344566663 3344555555555554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.38  E-value=0.048  Score=45.76  Aligned_cols=174  Identities=13%  Similarity=0.165  Sum_probs=83.3

Q ss_pred             CCCeEEEEeCC-----CeEEEEECCCCceEEE--EecCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeeee
Q psy15421        153 DDNQIVTSSGD-----MSCALWDIETGQQCAS--FIGHTGDVMSLSLAPDMRTFVSGACDA-----SAKLWDIRDGSCKQ  220 (340)
Q Consensus       153 ~~~~l~~~~~d-----~~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~sg~~dg-----~i~~wd~~~~~~~~  220 (340)
                      ++..++.|+.+     ..+.+||+.+.+-...  +....... +++. .++..++.|+.++     .+..||+.+++-..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-GAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-EEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            33445555533     3588899877642211  11111111 2222 2566777777553     57788887765222


Q ss_pred             --EecCCCCCeEEEEEecCCCEEEEEeCC-------CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCC
Q psy15421        221 --TFPGHESDINAVTFFPNGWAFATGSDD-------ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD  291 (340)
Q Consensus       221 --~~~~h~~~v~~v~~~~~~~~l~s~s~d-------~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d  291 (340)
                        .++...... +++. -+++.++.|+.+       ..+..||..+.+=...-........-..+.+  ++++++.|+.+
T Consensus       139 ~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  214 (302)
T 2xn4_A          139 VAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHD  214 (302)
T ss_dssp             ECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBS
T ss_pred             cCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCC
Confidence              121111111 2222 256677777653       3578888875432111111111111222333  67888888764


Q ss_pred             -----CcEEEEeCCCce--eeeeeccCCcceEEEEECCCCCEEEEeeCCC
Q psy15421        292 -----FNCNVWDSMKTE--RAGILAGHDNRVSCLGVTEDGMAVATGSWDS  334 (340)
Q Consensus       292 -----~~i~iw~~~~~~--~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~  334 (340)
                           ..+.+||..+..  .+..+......-..+.  -++..++.|+.++
T Consensus       215 ~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~  262 (302)
T 2xn4_A          215 GPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDG  262 (302)
T ss_dssp             SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCS
T ss_pred             CCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCC
Confidence                 368889876543  2222221111111222  2666777777654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.37  E-value=0.058  Score=46.53  Aligned_cols=166  Identities=12%  Similarity=0.093  Sum_probs=96.1

Q ss_pred             CCCeEEEEECCCC--ceE-EEEec-----CCCCeEEEEEcC--CCC--EEEEEeC--CCcEEEEECCCC--e--eeeEec
Q psy15421        162 GDMSCALWDIETG--QQC-ASFIG-----HTGDVMSLSLAP--DMR--TFVSGAC--DASAKLWDIRDG--S--CKQTFP  223 (340)
Q Consensus       162 ~d~~v~iwd~~~~--~~~-~~~~~-----~~~~v~~~~~~~--~~~--~~~sg~~--dg~i~~wd~~~~--~--~~~~~~  223 (340)
                      .+|.|.++|+.+.  +.. -.+.+     ..-....+.+.+  ++.  ++++-..  +.+|.+|++..+  .  .+..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6889999998732  211 12222     122466677655  343  4444333  577888876543  2  223444


Q ss_pred             CC-CCCeEEEEEecCCCEEEEEe-----------------CCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEE
Q psy15421        224 GH-ESDINAVTFFPNGWAFATGS-----------------DDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLL  285 (340)
Q Consensus       224 ~h-~~~v~~v~~~~~~~~l~s~s-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
                      +. -...+.+++.++|..+++..                 ..|.+.-+|..  +......  . ....+.++|+||+++|
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~--~-l~~pNGia~spDg~~l  235 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAE--G-FDFANGINISPDGKYV  235 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEE--E-ESSEEEEEECTTSSEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeec--C-CcccCcceECCCCCEE
Confidence            32 24579999999998877754                 12445555543  2111111  1 1236889999999877


Q ss_pred             EEEe-CCCcEEEEeCCC-cee--eeeeccCCcceEEEEECC-CCCEEEEeeCC
Q psy15421        286 LAGY-DDFNCNVWDSMK-TER--AGILAGHDNRVSCLGVTE-DGMAVATGSWD  333 (340)
Q Consensus       286 ~~g~-~d~~i~iw~~~~-~~~--~~~~~~h~~~i~~~~~s~-d~~~l~s~s~D  333 (340)
                      ..+. ..+.|..|+... +..  ...+ .-.+..-.+++.+ +|++.+++..+
T Consensus       236 Yvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          236 YIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             EEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence            6655 578899998642 221  1223 2235567788898 59888776544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.32  E-value=0.11  Score=48.64  Aligned_cols=225  Identities=6%  Similarity=-0.053  Sum_probs=121.1

Q ss_pred             eCCCeEEEEeCCCCCeeEE-eeCCCCcEEEEEECCCCCEEEEEeC-CCeEEEEEccCCCCceEEEEeecCCCcceEEEEE
Q psy15421         74 SQDGKLIVWDSYTTNKVHA-IPLRSSWVMTCAYAPSGSFVACGGL-DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF  151 (340)
Q Consensus        74 ~~d~~i~iwd~~~~~~~~~-~~~~~~~i~~v~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~  151 (340)
                      .....|+.-|+........ ....-.....++|++.+..++.+.. .+.|..+++......   ...+.........+.+
T Consensus        15 ~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~---~~v~~~~~~~P~GlAv   91 (619)
T 3s94_A           15 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV---QNVVVSGLLSPDGLAC   91 (619)
T ss_dssp             ECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C---EEEECSSCSCEEEEEE
T ss_pred             eccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce---EEEEeCCCCCcCeEEE
Confidence            4456778777765431111 2222344678899987766665554 567777776533111   1112221123445555


Q ss_pred             cC-CCe-EEEEeCCCeEEEEECCCCceEEEEe-cCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeeeEecCCC
Q psy15421        152 LD-DNQ-IVTSSGDMSCALWDIETGQQCASFI-GHTGDVMSLSLAPDMRTFVSGA--CDASAKLWDIRDGSCKQTFPGHE  226 (340)
Q Consensus       152 ~~-~~~-l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~sg~--~dg~i~~wd~~~~~~~~~~~~h~  226 (340)
                      .. ++. +.+-...+.|.+.++..... ..+. ..-.....+++.|....++...  ..+.|...++.-..........-
T Consensus        92 D~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~  170 (619)
T 3s94_A           92 DWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI  170 (619)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred             EecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCC
Confidence            43 444 44555678999999975433 2333 3445578999999755444333  24667777765322222222234


Q ss_pred             CCeEEEEEecCC-CEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceee
Q psy15421        227 SDINAVTFFPNG-WAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERA  305 (340)
Q Consensus       227 ~~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~  305 (340)
                      ...+.|++++++ +.+++=...+.|...|+.......... ... .....+++.++ .++++-..++.|...|..+++..
T Consensus       171 ~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-~~~-~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          171 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-GSL-PHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred             CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe-CCC-CCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence            467899999864 445555567789888887543322211 111 11345677665 55566566778888887666443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.28  E-value=0.075  Score=45.95  Aligned_cols=226  Identities=14%  Similarity=0.145  Sum_probs=120.6

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC-eeEEee---CCCCcEEEEEECCC---CCEEEEEeC----C----C
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN-KVHAIP---LRSSWVMTCAYAPS---GSFVACGGL----D----N  119 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~---~~~~~i~~v~~~~~---~~~l~~~~~----d----~  119 (340)
                      ...-..++|.|+++++++ ..+|.|++++. +++ .+..++   ........++++|+   +..|+.+..    +    +
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            445689999999986554 56699999973 443 122221   11245789999997   444444332    2    4


Q ss_pred             eEEEEEccCCCCce---E-EEEeec---CCCcceEEEEEcCCCeEEEEeCC--------------CeEEEEECCCC----
Q psy15421        120 ICSIYSLKTREGNV---R-VSRELP---GHTGYLSCCRFLDDNQIVTSSGD--------------MSCALWDIETG----  174 (340)
Q Consensus       120 ~v~i~~~~~~~~~~---~-~~~~~~---~~~~~v~~~~~~~~~~l~~~~~d--------------~~v~iwd~~~~----  174 (340)
                      .|..++........   . +...++   .|.  -..+.|.+++.|..+.++              +.|.-++....    
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~  183 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD  183 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence            56666654331111   1 111122   122  234667777765554332              34555554321    


Q ss_pred             -----ceEEEEecCCCCeEEEEEcC-CCCEEEEEeCCC---cEEEEECCCCe------------------eeeEecCCCC
Q psy15421        175 -----QQCASFIGHTGDVMSLSLAP-DMRTFVSGACDA---SAKLWDIRDGS------------------CKQTFPGHES  227 (340)
Q Consensus       175 -----~~~~~~~~~~~~v~~~~~~~-~~~~~~sg~~dg---~i~~wd~~~~~------------------~~~~~~~h~~  227 (340)
                           ..+. ..++. ....++|+| ++.++++-...+   .|.+..  .+.                  .+..+.....
T Consensus       184 npf~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~  259 (354)
T 3a9g_A          184 NPFPNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETW  259 (354)
T ss_dssp             SSSTTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCC
T ss_pred             CCCCCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCc
Confidence                 0111 12332 356899999 666665432221   233332  211                  1222311123


Q ss_pred             CeEEEEEe-------cCCCEEEEEeCCCcEEEEeCcCCc-EE--EEeecCCcccceEEEEEcCCCcEEEEEe
Q psy15421        228 DINAVTFF-------PNGWAFATGSDDATCRLFDIRADQ-EL--AMYSHDNIICGITSVAFSRSGRLLLAGY  289 (340)
Q Consensus       228 ~v~~v~~~-------~~~~~l~s~s~d~~i~iwd~~~~~-~~--~~~~~~~~~~~i~~~~~s~~~~~l~~g~  289 (340)
                      ....++|.       .+|.++++....+.|...++.... ..  ..+. ......+..+++.|||.++++..
T Consensus       260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-KNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-TTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-cCCCCCeeEEEECCCCcEEEEEe
Confidence            56788883       467777777667788888876432 21  1121 11134588999999998776654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.26  E-value=0.058  Score=47.34  Aligned_cols=141  Identities=14%  Similarity=0.089  Sum_probs=89.2

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeeeeEecCC----CCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCc-----------
Q psy15421        195 DMRTFVSGACDASAKLWDIRDGSCKQTFPGH----ESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ-----------  259 (340)
Q Consensus       195 ~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h----~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~-----------  259 (340)
                      ++..++.+ .++.||.-++..+..-+.++-.    -..|..+..+|+|.++|..+ +..|.|-.+..+.           
T Consensus        31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence            34444332 3467777776643333333321    23577899999999999886 5688888876211           


Q ss_pred             -EEEEeecCC----cccceEEEEEcCC---CcEEEEEeCCCcEEEEeCCCc--eee--------eeeccCCcceEEEEEC
Q psy15421        260 -ELAMYSHDN----IICGITSVAFSRS---GRLLLAGYDDFNCNVWDSMKT--ERA--------GILAGHDNRVSCLGVT  321 (340)
Q Consensus       260 -~~~~~~~~~----~~~~i~~~~~s~~---~~~l~~g~~d~~i~iw~~~~~--~~~--------~~~~~h~~~i~~~~~s  321 (340)
                       ....+....    ...+|..+.|||-   +..|++=..|+.|++||+...  ++.        .-+......|.+++|+
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg  188 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS  188 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence             111222211    1246999999996   457888899999999998641  111        0122334789999999


Q ss_pred             CCCCEEEEee--CCCcEE
Q psy15421        322 EDGMAVATGS--WDSFLR  337 (340)
Q Consensus       322 ~d~~~l~s~s--~D~~i~  337 (340)
                      +++..|...+  .+|-|+
T Consensus       189 ~~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          189 KDGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             TTSSCEEEEECTTSCEEE
T ss_pred             CCCcEEEEEecCCCCCEE
Confidence            9998766644  777775

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.16  E-value=0.084  Score=44.15  Aligned_cols=184  Identities=15%  Similarity=0.168  Sum_probs=91.7

Q ss_pred             CCCeEEEEeCC-----CeEEEEeCCCCC---eeEEe--eCCCCcEEEEEECCCCCEEEEEeCC-----CeEEEEEccCCC
Q psy15421         66 DSRNLVSASQD-----GKLIVWDSYTTN---KVHAI--PLRSSWVMTCAYAPSGSFVACGGLD-----NICSIYSLKTRE  130 (340)
Q Consensus        66 ~~~~l~s~~~d-----~~i~iwd~~~~~---~~~~~--~~~~~~i~~v~~~~~~~~l~~~~~d-----~~v~i~~~~~~~  130 (340)
                      ++..++.|+.+     ..+.++|..+.+   ....-  +........+.+  +++.++.|+.+     +.+.+||..+. 
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~-  138 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID-  138 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT-
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC-
Confidence            56677777755     458889987766   33221  111111122222  67777777754     35677776543 


Q ss_pred             CceEEEEeecCCCcceEEEEEcCCCeEEEEeCC-----CeEEEEECCCCceEEE--EecCCCCeEEEEEcCCCCEEEEEe
Q psy15421        131 GNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGD-----MSCALWDIETGQQCAS--FIGHTGDVMSLSLAPDMRTFVSGA  203 (340)
Q Consensus       131 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~sg~  203 (340)
                       .......++.....-.++ ..++..++.|+.+     ..+..||+.+++-...  +....... +++. .+++.++.|+
T Consensus       139 -~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG  214 (301)
T 2vpj_A          139 -QWSMLGDMQTAREGAGLV-VASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGA-GVAL-LNDHIYVVGG  214 (301)
T ss_dssp             -EEEEEEECSSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECC
T ss_pred             -eEEECCCCCCCcccceEE-EECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccc-eEEE-ECCEEEEEeC
Confidence             333323333222111222 2234445555433     4588999887643221  11111111 2222 2566777777


Q ss_pred             CC-----CcEEEEECCCCeeeeE--ecCCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCcCC
Q psy15421        204 CD-----ASAKLWDIRDGSCKQT--FPGHESDINAVTFFPNGWAFATGSDD-----ATCRLFDIRAD  258 (340)
Q Consensus       204 ~d-----g~i~~wd~~~~~~~~~--~~~h~~~v~~v~~~~~~~~l~s~s~d-----~~i~iwd~~~~  258 (340)
                      .+     ..+.+||+.+++-...  ++.......++.  -+++.++.|+.+     ..+.+||..+.
T Consensus       215 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          215 FDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             BCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            64     5688999987653221  111111112222  267777777765     34677777643

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.15  E-value=0.0041  Score=59.17  Aligned_cols=189  Identities=13%  Similarity=0.005  Sum_probs=99.8

Q ss_pred             EEEEcC-CCeEEEE-eCCCeEEEEECCC----CceEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeee
Q psy15421        148 CCRFLD-DNQIVTS-SGDMSCALWDIET----GQQCASFIGHTGDVMSLSLAPD-MRTFVSGACDASAKLWDIRDGSCKQ  220 (340)
Q Consensus       148 ~~~~~~-~~~l~~~-~~d~~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~~sg~~dg~i~~wd~~~~~~~~  220 (340)
                      .+.|.. .+.|..+ ...+.|..+++..    ......+......+..+++.+. ++++++-...+.|.++++.......
T Consensus       410 gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~  489 (699)
T 1n7d_A          410 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT  489 (699)
T ss_dssp             CCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEE
T ss_pred             EEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEE
Confidence            344543 3444433 3467888888865    1111111111123556888754 4455555667899999987544333


Q ss_pred             EecCCCCCeEEEEEecCC-CEEEEEeCC-CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCc-EEEEEeCCCcEEEE
Q psy15421        221 TFPGHESDINAVTFFPNG-WAFATGSDD-ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR-LLLAGYDDFNCNVW  297 (340)
Q Consensus       221 ~~~~h~~~v~~v~~~~~~-~~l~s~s~d-~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~d~~i~iw  297 (340)
                      .+.........|+++|.+ .++++-... +.|..+++......... ... ....+.++|+|++. ++++-...+.|..+
T Consensus       490 l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~-~~~-l~~PnGlavd~~~~~LY~aD~~~~~I~~~  567 (699)
T 1n7d_A          490 LFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-TEN-IQWPNGITLDLLSGRLYWVDSKLHSISSI  567 (699)
T ss_dssp             ECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES-CSS-CSSCCCEEECTTTCCEEEEETTTTEEEEE
T ss_pred             EEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE-eCC-CCCccEEEEeccCCEEEEEecCCCeEEEE
Confidence            333223456788999864 444444333 67888777643222211 111 22356899998755 45555567789999


Q ss_pred             eCCCceeeeeec--cCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        298 DSMKTERAGILA--GHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       298 ~~~~~~~~~~~~--~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      +.........+.  ........|++..+ .++++....+.|...
T Consensus       568 d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~  610 (699)
T 1n7d_A          568 DVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSA  610 (699)
T ss_dssp             CSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred             ccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence            865432222222  11122334444444 344555555666543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.09  E-value=0.053  Score=47.58  Aligned_cols=135  Identities=17%  Similarity=0.166  Sum_probs=88.7

Q ss_pred             CCCeEEEEECCCCceEEEEecC----CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------------eeeEecC-
Q psy15421        162 GDMSCALWDIETGQQCASFIGH----TGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS------------CKQTFPG-  224 (340)
Q Consensus       162 ~d~~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~------------~~~~~~~-  224 (340)
                      .++.||..++.....-+.+...    -..+..+..+|+|++++.. .+.+|.+-.+..+.            ..+.+.- 
T Consensus        39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~  117 (452)
T 3pbp_A           39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID  117 (452)
T ss_dssp             ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred             ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccccccccceeEEEcC
Confidence            3477777777643332333221    2257889999999988765 56789998876321            0122221 


Q ss_pred             -----CCCCeEEEEEecC---CCEEEEEeCCCcEEEEeCcCC--cEE------EEeecCCcccceEEEEEcCCCcEEEEE
Q psy15421        225 -----HESDINAVTFFPN---GWAFATGSDDATCRLFDIRAD--QEL------AMYSHDNIICGITSVAFSRSGRLLLAG  288 (340)
Q Consensus       225 -----h~~~v~~v~~~~~---~~~l~s~s~d~~i~iwd~~~~--~~~------~~~~~~~~~~~i~~~~~s~~~~~l~~g  288 (340)
                           ...+|..+-|+|-   +..|++-..|+.|++||+...  .+.      ..++.......|.+++|.+++-.|.+.
T Consensus       118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl  197 (452)
T 3pbp_A          118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCL  197 (452)
T ss_dssp             GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEE
T ss_pred             CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEE
Confidence                 2467999999995   568999999999999998742  122      112222222458899999998877775


Q ss_pred             e--CCCcEEEE
Q psy15421        289 Y--DDFNCNVW  297 (340)
Q Consensus       289 ~--~d~~i~iw  297 (340)
                      +  ..|.|+-.
T Consensus       198 ~~t~~GDIYAl  208 (452)
T 3pbp_A          198 NTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSCEEEEE
T ss_pred             ecCCCCCEEEE
Confidence            5  77877654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.08  E-value=0.12  Score=44.42  Aligned_cols=144  Identities=15%  Similarity=0.095  Sum_probs=82.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeee--eEec----CCCCCeEEEEEecC----CCEEEEEe--CCCcEE
Q psy15421        184 TGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCK--QTFP----GHESDINAVTFFPN----GWAFATGS--DDATCR  251 (340)
Q Consensus       184 ~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~--~~~~----~h~~~v~~v~~~~~----~~~l~s~s--~d~~i~  251 (340)
                      -.....|+|.|++.++++-...|.|++++...++..  ..+.    ........|+++|+    +..+++-+  .+..|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            446789999999998777655899999987655432  2221    22456789999995    55555433  344555


Q ss_pred             EEeCcCC----------cEEE-EeecCCcccceEEEEEcCCCcEEEEEeC-------------CCcEEEEeCCCc-----
Q psy15421        252 LFDIRAD----------QELA-MYSHDNIICGITSVAFSRSGRLLLAGYD-------------DFNCNVWDSMKT-----  302 (340)
Q Consensus       252 iwd~~~~----------~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~g~~-------------d~~i~iw~~~~~-----  302 (340)
                      -|.....          +.+. .+.. ........++|.|||.++++-++             .+.|.-.+....     
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            5554431          1111 1111 11112456899999988777442             244444443211     


Q ss_pred             ---eeeeeeccCCcceEEEEECCCCCEEEE
Q psy15421        303 ---ERAGILAGHDNRVSCLGVTEDGMAVAT  329 (340)
Q Consensus       303 ---~~~~~~~~h~~~i~~~~~s~d~~~l~s  329 (340)
                         .....-.+| .....++|.|+|.+.++
T Consensus       190 Pf~~~~i~a~G~-RNp~Gla~dp~G~L~~~  218 (347)
T 3das_A          190 PFPGSPVYSYGH-RNVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             SSTTCCEEEBCC-SBCCEEEECTTCCEEEE
T ss_pred             CCCCCeEEeeCC-CCcceEEECCCCCEEEE
Confidence               011111245 34568899998876554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.05  E-value=0.13  Score=44.38  Aligned_cols=222  Identities=13%  Similarity=0.087  Sum_probs=116.1

Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeec---CCCcceEEEEEcCC----CeEEEE-eCC-----Ce
Q psy15421         99 WVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELP---GHTGYLSCCRFLDD----NQIVTS-SGD-----MS  165 (340)
Q Consensus        99 ~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~----~~l~~~-~~d-----~~  165 (340)
                      ....++|.|+|+++++ ..++.|.+++  .+  .......++   ........+.+.++    +.+..+ ...     ..
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g--~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EG--RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TT--EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CC--CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            4568899999996655 5568888887  22  222222221   11234566777765    444433 322     56


Q ss_pred             EEEEECCCCce-----E-EEEe---cCCCCeEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC-------
Q psy15421        166 CALWDIETGQQ-----C-ASFI---GHTGDVMSLSLAPDMRTFVSGAC-------------DASAKLWDIRDG-------  216 (340)
Q Consensus       166 v~iwd~~~~~~-----~-~~~~---~~~~~v~~~~~~~~~~~~~sg~~-------------dg~i~~wd~~~~-------  216 (340)
                      |..++...+..     + ..+.   ........++|.|++.++++-+.             .|.|.-++....       
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            77787764321     1 1122   11113468999999987776432             145655654320       


Q ss_pred             -----eeeeEe-cCCCCCeEEEEEec-CCCEEEEEeCCCc--------EEEEeCcC----------------CcEEEEee
Q psy15421        217 -----SCKQTF-PGHESDINAVTFFP-NGWAFATGSDDAT--------CRLFDIRA----------------DQELAMYS  265 (340)
Q Consensus       217 -----~~~~~~-~~h~~~v~~v~~~~-~~~~l~s~s~d~~--------i~iwd~~~----------------~~~~~~~~  265 (340)
                           .....+ .+|. ....++|+| ++..+++=.....        |.+..-..                ..++..+.
T Consensus       187 ~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~  265 (352)
T 2ism_A          187 LGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP  265 (352)
T ss_dssp             TTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred             cCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence                 000111 1222 245788999 6766665433332        33322111                00111110


Q ss_pred             cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCce-------eeeeeccCCcceEEEEECCCCCEEEEee
Q psy15421        266 HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTE-------RAGILAGHDNRVSCLGVTEDGMAVATGS  331 (340)
Q Consensus       266 ~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~-------~~~~~~~h~~~i~~~~~s~d~~~l~s~s  331 (340)
                         .......++| .+|.++++....+.|...+.....       ....+ .-...+..+++.|||.++++..
T Consensus       266 ---~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          266 ---QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             ---TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ESSCCEEEEEECTTSCEEEEEC
T ss_pred             ---CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-ccCCCeeEEEECCCCcEEEEEe
Confidence               1123566777 467777776677777777654221       11222 2236789999999998777654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.04  E-value=0.11  Score=43.61  Aligned_cols=226  Identities=13%  Similarity=0.147  Sum_probs=106.8

Q ss_pred             CCCeEEEEeCC----CeEEEEeCCCCCeeEE--eeCCCCcEEEEEECCCCCEEEEEeC----C-----CeEEEEEccCCC
Q psy15421         66 DSRNLVSASQD----GKLIVWDSYTTNKVHA--IPLRSSWVMTCAYAPSGSFVACGGL----D-----NICSIYSLKTRE  130 (340)
Q Consensus        66 ~~~~l~s~~~d----~~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~~~~~~l~~~~~----d-----~~v~i~~~~~~~  130 (340)
                      ++..++.||.+    ..+.++|..+.+....  ++........+.  .++.+++.|+.    +     +.+.+||..+. 
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~-  100 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN-  100 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTT-
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCC-
Confidence            45566666632    3578888776653322  111111111222  25677777776    2     34667776543 


Q ss_pred             CceEEEEeecCCCcceEEEEEcCCCeEEEEeCC-----CeEEEEECCCCceEE--EEecCCCCeEEEEEcCCCCEEEEEe
Q psy15421        131 GNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGD-----MSCALWDIETGQQCA--SFIGHTGDVMSLSLAPDMRTFVSGA  203 (340)
Q Consensus       131 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~sg~  203 (340)
                       .......++........+. .++..++.|+.+     ..+.+||+.+++-..  .+.........+.+  ++++++.|+
T Consensus       101 -~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  176 (308)
T 1zgk_A          101 -QWSPCAPMSVPRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGG  176 (308)
T ss_dssp             -EEEECCCCSSCCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             -eEeECCCCCcCccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeC
Confidence             2222222222111112222 233344444422     458889987764221  11111111122222  566777776


Q ss_pred             CC-----CcEEEEECCCCeeee--EecCCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCcCCcEEEEeecCCccc
Q psy15421        204 CD-----ASAKLWDIRDGSCKQ--TFPGHESDINAVTFFPNGWAFATGSDD-----ATCRLFDIRADQELAMYSHDNIIC  271 (340)
Q Consensus       204 ~d-----g~i~~wd~~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~~~~~  271 (340)
                      .+     ..+..||+.+.+=..  .++.....-.++. . +++.++.|+.+     ..+.+||..+.+=...-.......
T Consensus       177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~  254 (308)
T 1zgk_A          177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-L-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS  254 (308)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred             CCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE-E-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc
Confidence            54     468889987764221  1111111112222 2 67778888765     568899987643211111111111


Q ss_pred             ceEEEEEcCCCcEEEEEeCC-----CcEEEEeCCCc
Q psy15421        272 GITSVAFSRSGRLLLAGYDD-----FNCNVWDSMKT  302 (340)
Q Consensus       272 ~i~~~~~s~~~~~l~~g~~d-----~~i~iw~~~~~  302 (340)
                      ....+.+  ++++++.|+.+     ..+.+||..+.
T Consensus       255 ~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          255 ALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             SCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             ceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            1222222  67888888754     34667776543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.01  E-value=0.17  Score=45.26  Aligned_cols=104  Identities=12%  Similarity=0.173  Sum_probs=61.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--eeEecC------CCCCeEEEEEec----CCCEEEEEeC------
Q psy15421        185 GDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC--KQTFPG------HESDINAVTFFP----NGWAFATGSD------  246 (340)
Q Consensus       185 ~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~--~~~~~~------h~~~v~~v~~~~----~~~~l~s~s~------  246 (340)
                      .....|+|.|+++++++-...+.|++++..++..  +..+..      .......|+|+|    ++..+++-+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            4578999999998777654445798888655543  222321      234577999999    4555555543      


Q ss_pred             ------CCcEEEEeCcCC-------cEEE-EeecCCcccceEEEEEcCCCcEEEEEe
Q psy15421        247 ------DATCRLFDIRAD-------QELA-MYSHDNIICGITSVAFSRSGRLLLAGY  289 (340)
Q Consensus       247 ------d~~i~iwd~~~~-------~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~g~  289 (340)
                            ...|.-|+....       +.+. .+.... ......++|.|||+++++-+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~-~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSK-DHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCS-SCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCC-CCCCCeEeECCCCeEEEEEC
Confidence                  234555554321       1111 111111 12367899999999877644

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.92  E-value=0.19  Score=44.26  Aligned_cols=251  Identities=9%  Similarity=0.145  Sum_probs=148.4

Q ss_pred             CCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC
Q psy15421         75 QDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD  154 (340)
Q Consensus        75 ~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  154 (340)
                      .+..|.|-|+.+...+..-+...+   +.-.+|..+.+|.-. ..+++|+++.+..   ++ ....- ...|..-.|.+.
T Consensus        46 ~~~~vvIiDl~~~~~~~rrpi~Ad---sAIMnP~~~iiALra-g~~lQiFnle~K~---kl-ks~~~-~e~VvfWkWis~  116 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRPISAD---SAIMNPASKVIALKA-GKTLQIFNIEMKS---KM-KAHTM-TDDVTFWKWISL  116 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEECCCS---EEEECSSSSCEEEEE-TTEEEEEETTTTE---EE-EEEEC-SSCCCEEEEEET
T ss_pred             CCCeEEEEECCCCCcceecccccc---eeeeCCCCcEEEEec-CCeEEEEchHHhh---hh-cceec-CCCceEEEecCC
Confidence            334788888887665543333222   223577777777654 7889999997653   11 11111 234555566666


Q ss_pred             CeEEEEeCCCeEEEEECCCC-ceEEEEecCC----CCeEEEEEcCCCCEEEE-Ee------CCCcEEEEECCCCeeeeEe
Q psy15421        155 NQIVTSSGDMSCALWDIETG-QQCASFIGHT----GDVMSLSLAPDMRTFVS-GA------CDASAKLWDIRDGSCKQTF  222 (340)
Q Consensus       155 ~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~~~s-g~------~dg~i~~wd~~~~~~~~~~  222 (340)
                      ..|... .+..|.-|++... .+...+..|.    ..|.....+++.+.++. |-      -.|.+.+|..+.+. .+.+
T Consensus       117 ~~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~i  194 (494)
T 1bpo_A          117 NTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPI  194 (494)
T ss_dssp             TEEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEE
T ss_pred             CeEEEE-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchh
Confidence            666554 4688999999753 3455555443    35777777888886552 22      24778899876543 4667


Q ss_pred             cCCCCCeEEEEEecCC---CEEEEEeCC---CcEEEEeCcCC--------cEEEE--eecCCcccceEEEEEcCCCcEEE
Q psy15421        223 PGHESDINAVTFFPNG---WAFATGSDD---ATCRLFDIRAD--------QELAM--YSHDNIICGITSVAFSRSGRLLL  286 (340)
Q Consensus       223 ~~h~~~v~~v~~~~~~---~~l~s~s~d---~~i~iwd~~~~--------~~~~~--~~~~~~~~~i~~~~~s~~~~~l~  286 (340)
                      +||......+.+..+.   ..|+-+...   +.+.|-++...        +....  +..+....=..++..++.-..+.
T Consensus       195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy  274 (494)
T 1bpo_A          195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF  274 (494)
T ss_dssp             CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred             eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence            7886554333332111   123333332   67888887532        11111  11111111245778888888888


Q ss_pred             EEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcE
Q psy15421        287 AGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFL  336 (340)
Q Consensus       287 ~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i  336 (340)
                      .-+.-|-+.+||++++.++..-+--.+.|...+...+..-++..-..|.|
T Consensus       275 viTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV  324 (494)
T 1bpo_A          275 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  324 (494)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred             EEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence            88999999999999998877555445566555555444445544455554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.92  E-value=0.013  Score=46.57  Aligned_cols=141  Identities=11%  Similarity=0.059  Sum_probs=78.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeee------eEe-c-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcC
Q psy15421        186 DVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCK------QTF-P-GHESDINAVTFFPNGWAFATGSDDATCRLFDIRA  257 (340)
Q Consensus       186 ~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~------~~~-~-~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  257 (340)
                      .+..++|+|++.+++.  .+|.+.-.+..+....      ..+ . +-. ...++.|.|+|.++++  .||.|+-++-.+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            4669999999987666  6777666565442110      111 0 111 1468999999988888  569988777532


Q ss_pred             CcE--E----EEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCcee-----eeeecc--CCcceEEEEECCCC
Q psy15421        258 DQE--L----AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTER-----AGILAG--HDNRVSCLGVTEDG  324 (340)
Q Consensus       258 ~~~--~----~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~-----~~~~~~--h~~~i~~~~~s~d~  324 (340)
                      ...  .    ........ ..+..+.|.|+|.+.++.  |+.++-.-..+...     .....+  .-..-.-+.|+++|
T Consensus       117 ~~~~~Wl~~a~~vg~~gw-~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G  193 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGW-SGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG  193 (236)
T ss_dssp             STTCCHHHHSEEEECSSG-GGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred             CCCCceeccccEeccCCC-CceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence            111  0    11111111 247899999999999888  66643221111100     011111  11223346799999


Q ss_pred             CEEEEeeCCCcE
Q psy15421        325 MAVATGSWDSFL  336 (340)
Q Consensus       325 ~~l~s~s~D~~i  336 (340)
                      ...+..  ++.+
T Consensus       194 ~l~~v~--~g~~  203 (236)
T 1tl2_A          194 TLFGVQ--GGKF  203 (236)
T ss_dssp             CEEEEE--TTEE
T ss_pred             cEEEEe--CCeE
Confidence            766544  6654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.91  E-value=0.15  Score=42.92  Aligned_cols=210  Identities=10%  Similarity=0.065  Sum_probs=98.4

Q ss_pred             EEEEeCCCeEEEEeCCCCCeeE-EeeCCCCcEEEEEECCCCCEEEEEeC-----C--C----eEEEEEccCCCCceEEEE
Q psy15421         70 LVSASQDGKLIVWDSYTTNKVH-AIPLRSSWVMTCAYAPSGSFVACGGL-----D--N----ICSIYSLKTREGNVRVSR  137 (340)
Q Consensus        70 l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~~~~~-----d--~----~v~i~~~~~~~~~~~~~~  137 (340)
                      ++.|+  ..+.+||..+.+... .++.............++..++.|+.     .  .    .+.+||..+.  ......
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~--~W~~~~   83 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS--EWLGMP   83 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT--EEEECC
T ss_pred             EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCC--eEEECC
Confidence            44455  478899988776432 11111122223334457788888874     1  1    1555665432  232222


Q ss_pred             eecCCCcceEEEEEcCCCeEEEEeCC--------CeEEEEECCCCceEE--EEecCCCCeEEEEEcCCCCEEEEEeC-C-
Q psy15421        138 ELPGHTGYLSCCRFLDDNQIVTSSGD--------MSCALWDIETGQQCA--SFIGHTGDVMSLSLAPDMRTFVSGAC-D-  205 (340)
Q Consensus       138 ~~~~~~~~v~~~~~~~~~~l~~~~~d--------~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~sg~~-d-  205 (340)
                      .++....... +....+..++.|+.+        ..+.+||+.+++-..  .+...... .+++. .+++.++.|+. + 
T Consensus        84 ~~p~~r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~  160 (315)
T 4asc_A           84 PLPSPRCLFG-LGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSD  160 (315)
T ss_dssp             CBSSCEESCE-EEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTT
T ss_pred             CCCcchhcee-EEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCC
Confidence            2221111111 122233344455421        458889988764211  11111111 12222 35567777775 2 


Q ss_pred             ----CcEEEEECCCCeeee--EecCCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEeCcCCcEEEEeec-CCcccce
Q psy15421        206 ----ASAKLWDIRDGSCKQ--TFPGHESDINAVTFFPNGWAFATGSDDA-----TCRLFDIRADQELAMYSH-DNIICGI  273 (340)
Q Consensus       206 ----g~i~~wd~~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~s~d~-----~i~iwd~~~~~~~~~~~~-~~~~~~i  273 (340)
                          ..+..||..+.+=..  .++.....- +++. -+++.++.|+.++     .+.+||..+.+= ..... ......-
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~  237 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSLF-GATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKW-APFEAFPQERSSL  237 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEE-EEECCCSSCCBSC
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhce-EEEE-ECCEEEEEeccCCCCccceEEEEECCCCeE-EECCCCCCcccce
Confidence                468889988764221  121111111 2222 2677888887654     478888875431 11111 1111112


Q ss_pred             EEEEEcCCCcEEEEEeCC
Q psy15421        274 TSVAFSRSGRLLLAGYDD  291 (340)
Q Consensus       274 ~~~~~s~~~~~l~~g~~d  291 (340)
                      ..+.+  ++++++.|+.+
T Consensus       238 ~~~~~--~~~l~v~GG~~  253 (315)
T 4asc_A          238 SLVSL--VGTLYAIGGFA  253 (315)
T ss_dssp             EEEEE--TTEEEEEEEEE
T ss_pred             eEEEE--CCEEEEECCcc
Confidence            22333  56888887764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.84  E-value=0.17  Score=42.50  Aligned_cols=162  Identities=12%  Similarity=0.128  Sum_probs=79.0

Q ss_pred             CeEEEEECCCCceEE--EEecCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeeee--EecCCCCCeEEEEE
Q psy15421        164 MSCALWDIETGQQCA--SFIGHTGDVMSLSLAPDMRTFVSGACD-----ASAKLWDIRDGSCKQ--TFPGHESDINAVTF  234 (340)
Q Consensus       164 ~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~sg~~d-----g~i~~wd~~~~~~~~--~~~~h~~~v~~v~~  234 (340)
                      ..+.+||+.+++-..  .+.........+.+  +++.++.|+.+     ..+..||..+++-..  .++.....-.++.+
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  167 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL  167 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence            457888987764221  11111111222222  56677777643     467889988765221  12211111122222


Q ss_pred             ecCCCEEEEEeCC-----CcEEEEeCcCCcEEEEeec-CCcccceEEEEEcCCCcEEEEEeCC-----CcEEEEeCCCce
Q psy15421        235 FPNGWAFATGSDD-----ATCRLFDIRADQELAMYSH-DNIICGITSVAFSRSGRLLLAGYDD-----FNCNVWDSMKTE  303 (340)
Q Consensus       235 ~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~g~~d-----~~i~iw~~~~~~  303 (340)
                        ++..++.|+.+     ..+..||..+.+=. .... ......-.++.+  ++++++.|+.+     ..+.+||..+..
T Consensus       168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWR-MITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             --TTEEEEECCBCSSCBCCCEEEEETTTTEEE-ECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             --CCEEEEEeCCCCCCcCceEEEEeCCCCeEe-eCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence              67777777765     45888888654311 1111 111111223333  67888888765     458889876543


Q ss_pred             e--eeeeccCCcceEEEEECCCCCEEEEeeCCC
Q psy15421        304 R--AGILAGHDNRVSCLGVTEDGMAVATGSWDS  334 (340)
Q Consensus       304 ~--~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~  334 (340)
                      -  +..+......-..+.+  ++..++.|+.++
T Consensus       243 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~  273 (308)
T 1zgk_A          243 WTFVAPMKHRRSALGITVH--QGRIYVLGGYDG  273 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             EEECCCCCCCccceEEEEE--CCEEEEEcCcCC
Confidence            2  2222211111122222  566777777653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.77  E-value=0.076  Score=45.71  Aligned_cols=49  Identities=10%  Similarity=-0.051  Sum_probs=25.4

Q ss_pred             CcEEEEECCCCee--eeEecCCCCCeEEEEEecCCCEEEEEeC------CCcEEEEeC
Q psy15421        206 ASAKLWDIRDGSC--KQTFPGHESDINAVTFFPNGWAFATGSD------DATCRLFDI  255 (340)
Q Consensus       206 g~i~~wd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~s~------d~~i~iwd~  255 (340)
                      ..+.+||..+.+=  +..++.....-.+++.. +++.++.|+.      ...+..||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence            5788999887652  22222111110223332 5667777664      345677776

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.67  E-value=0.43  Score=44.70  Aligned_cols=218  Identities=11%  Similarity=0.002  Sum_probs=122.9

Q ss_pred             EEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcC-CCeE-EEEeCCCeEEEEECCCCceEEEEecCCCCeE
Q psy15421        111 FVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD-DNQI-VTSSGDMSCALWDIETGQQCASFIGHTGDVM  188 (340)
Q Consensus       111 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~  188 (340)
                      +|+.+ ..+.|+..++.....  .....+.+ ......+.|.. ++.+ .+-..++.|..+++........+..-...+.
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~--~~~~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~   83 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNN--NVAIPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPE   83 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTC--EEECCCCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred             EEEEE-eCCcEEEEECCCCCc--ceEEEcCC-CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence            44443 456678888764321  11111112 22345566654 4444 4445678899898875433322222224577


Q ss_pred             EEEEcCCCC-EEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecC-CCEEEEE-eCCCcEEEEeCcCCcEEEEee
Q psy15421        189 SLSLAPDMR-TFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPN-GWAFATG-SDDATCRLFDIRADQELAMYS  265 (340)
Q Consensus       189 ~~~~~~~~~-~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~-s~d~~i~iwd~~~~~~~~~~~  265 (340)
                      .+++.+.+. ++.+-...+.|.+.++........+...-.....|+++|. |..+.+- +..+.|...++..........
T Consensus        84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~  163 (628)
T 4a0p_A           84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP  163 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC
Confidence            888887655 4455566789999998644322223233456789999985 5555554 235678888876544333222


Q ss_pred             cCCcccceEEEEEcCCCcEEEEE-eCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEE
Q psy15421        266 HDNIICGITSVAFSRSGRLLLAG-YDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLR  337 (340)
Q Consensus       266 ~~~~~~~i~~~~~s~~~~~l~~g-~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~  337 (340)
                        . ....+.+++++++..|..+ ...+.|..++...... ..+.........+++.. +..+++-...+.|.
T Consensus       164 --~-~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~  231 (628)
T 4a0p_A          164 --N-VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIE  231 (628)
T ss_dssp             --S-CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEE
T ss_pred             --C-CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEE
Confidence              1 2347889999976655554 4567888888654333 23333333445666654 34444544455554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.63  E-value=0.031  Score=47.81  Aligned_cols=191  Identities=14%  Similarity=0.062  Sum_probs=100.6

Q ss_pred             CeEEEEeCCCeEEEEeCCCCCeeEEeeCCC-CcEEEEEEC--C-CCCEEEEE-eCCCeEEEEEccCCCCceEEEEeecC-
Q psy15421         68 RNLVSASQDGKLIVWDSYTTNKVHAIPLRS-SWVMTCAYA--P-SGSFVACG-GLDNICSIYSLKTREGNVRVSRELPG-  141 (340)
Q Consensus        68 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~i~~v~~~--~-~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~-  141 (340)
                      ..++.++.||.|.-.|..+++.+..++... .++....-.  + ++..++.. ..||.+..++..++  ..+.....+. 
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G--~~~~~~~~~~l   88 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG--LQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE--EEEEEEEHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC--cEEeeeccccc
Confidence            367889999999999999999888776541 222221100  1 22333333 57888888876543  2223333221 


Q ss_pred             -CCcceEE--EE-E------cCCCeEEEEeCCCeEEEEECCCCceEEEEecCC--C-----CeEEEEEc-----CCCCEE
Q psy15421        142 -HTGYLSC--CR-F------LDDNQIVTSSGDMSCALWDIETGQQCASFIGHT--G-----DVMSLSLA-----PDMRTF  199 (340)
Q Consensus       142 -~~~~v~~--~~-~------~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--~-----~v~~~~~~-----~~~~~~  199 (340)
                       ...++..  -. .      ..++.+++++.++.+...|+.+|+.+..+..-.  +     ...|....     ..+..+
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v  168 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI  168 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence             1111110  00 0      146678899999999999999999988775321  1     01111111     113456


Q ss_pred             EEEeCCCcEEEEECCCCee----eeEecCCCCC--e-EEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEE
Q psy15421        200 VSGACDASAKLWDIRDGSC----KQTFPGHESD--I-NAVTFFPNGWAFATGSDDATCRLFDIRADQELA  262 (340)
Q Consensus       200 ~sg~~dg~i~~wd~~~~~~----~~~~~~h~~~--v-~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  262 (340)
                      +.|..+..+.+.+ ++|+.    ...+......  + ..-....++.+ +.++.||.|.-+|..++..+.
T Consensus       169 ~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          169 VIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             EEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            6677776666655 44431    0111111000  0 00000123555 346778888888877766654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.52  E-value=0.34  Score=41.71  Aligned_cols=228  Identities=12%  Similarity=0.141  Sum_probs=118.9

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCee---EEee----CCCCcEEEEEECCC---CCEEEEEe-C-------
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKV---HAIP----LRSSWVMTCAYAPS---GSFVACGG-L-------  117 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~----~~~~~i~~v~~~~~---~~~l~~~~-~-------  117 (340)
                      ..-+.|+|.|+++.|+.+...|.|++++.. +...   ..++    ........++++|+   +.+|+... .       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            355899999999833445667999999853 2211   1111    11234688999995   44444332 2       


Q ss_pred             CCeEEEEEccCCCCceE----EEEeec-----CCCcceEEEEEcCCCeEEEEeCC--------------CeEEEEECCCC
Q psy15421        118 DNICSIYSLKTREGNVR----VSRELP-----GHTGYLSCCRFLDDNQIVTSSGD--------------MSCALWDIETG  174 (340)
Q Consensus       118 d~~v~i~~~~~~~~~~~----~~~~~~-----~~~~~v~~~~~~~~~~l~~~~~d--------------~~v~iwd~~~~  174 (340)
                      ...|..+++........    +...++     .|.  -..+.|.+++.|..+.+|              +.|.-++....
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence            22455555543322221    111222     122  234677778776655544              35666665432


Q ss_pred             c------------eEEEE-ecCCCCeEEEEEcC-CCCEEEEEe-CCCcEEEEECCCCee---------------------
Q psy15421        175 Q------------QCASF-IGHTGDVMSLSLAP-DMRTFVSGA-CDASAKLWDIRDGSC---------------------  218 (340)
Q Consensus       175 ~------------~~~~~-~~~~~~v~~~~~~~-~~~~~~sg~-~dg~i~~wd~~~~~~---------------------  218 (340)
                      -            ....+ .++ .....++|+| +++++++=. .++.=.|.-+..+..                     
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~  253 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK  253 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred             CCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence            0            11111 223 2367899999 565555422 122122222222110                     


Q ss_pred             ----------eeEecCCCCCeEEEEEec-------CCCEEEEEeCCCcEEEEeCcCCcEEEEeec-CCcccceEEEEEcC
Q psy15421        219 ----------KQTFPGHESDINAVTFFP-------NGWAFATGSDDATCRLFDIRADQELAMYSH-DNIICGITSVAFSR  280 (340)
Q Consensus       219 ----------~~~~~~h~~~v~~v~~~~-------~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s~  280 (340)
                                ...+.. ...+..++|..       +|.+|++-...+.|...++...+....... ......+..+++.|
T Consensus       254 ~~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p  332 (353)
T 2g8s_A          254 GEIVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP  332 (353)
T ss_dssp             BSSCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred             CCCCCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence                      111222 23466778863       466777777778888777765443322111 12223688999999


Q ss_pred             CCcEEEEE
Q psy15421        281 SGRLLLAG  288 (340)
Q Consensus       281 ~~~~l~~g  288 (340)
                      ||.++++.
T Consensus       333 dG~lyv~t  340 (353)
T 2g8s_A          333 DGYLYVLT  340 (353)
T ss_dssp             TSCEEEEE
T ss_pred             CCcEEEEE
Confidence            99876653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.47  E-value=0.21  Score=43.10  Aligned_cols=143  Identities=11%  Similarity=0.089  Sum_probs=77.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeE---e----cCCCCCeEEEEEecC----CCEEEEEeC-------
Q psy15421        185 GDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQT---F----PGHESDINAVTFFPN----GWAFATGSD-------  246 (340)
Q Consensus       185 ~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~---~----~~h~~~v~~v~~~~~----~~~l~s~s~-------  246 (340)
                      .....|+|.|+++.++.+...|.|++++.. +.....   +    .........++++|+    +..+++-+.       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            357899999999834445668999999853 432211   1    112345689999995    655555443       


Q ss_pred             CCcEEEEeCcCC--c---EEEEeec-C---CcccceEEEEEcCCCcEEEEEeCC-------------CcEEEEeCCCce-
Q psy15421        247 DATCRLFDIRAD--Q---ELAMYSH-D---NIICGITSVAFSRSGRLLLAGYDD-------------FNCNVWDSMKTE-  303 (340)
Q Consensus       247 d~~i~iwd~~~~--~---~~~~~~~-~---~~~~~i~~~~~s~~~~~l~~g~~d-------------~~i~iw~~~~~~-  303 (340)
                      ...|..|+....  .   ....+.. .   ........++|.|||.++++-++.             +.|.-++....- 
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            224655655422  1   1111111 1   001113578999999766664332             456666543210 


Q ss_pred             -----------eeeee-ccCCcceEEEEECC-CCCEEEE
Q psy15421        304 -----------RAGIL-AGHDNRVSCLGVTE-DGMAVAT  329 (340)
Q Consensus       304 -----------~~~~~-~~h~~~i~~~~~s~-d~~~l~s  329 (340)
                                 ....+ .+| .....++|.| +|.++++
T Consensus       177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred             CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence                       11111 233 4467899999 5654443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.36  E-value=0.43  Score=41.12  Aligned_cols=187  Identities=6%  Similarity=0.044  Sum_probs=106.8

Q ss_pred             cEEEEEEcCCCCeEEEEe------------CCCeEEEEeCCCC--Cee-EEeeC-----CCCcEEEEEECC--CCC-EEE
Q psy15421         57 KIYAMHWGSDSRNLVSAS------------QDGKLIVWDSYTT--NKV-HAIPL-----RSSWVMTCAYAP--SGS-FVA  113 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~------------~d~~i~iwd~~~~--~~~-~~~~~-----~~~~i~~v~~~~--~~~-~l~  113 (340)
                      ..-++...|+|..+++++            .+|.|.++|..+.  +.. ..+..     ..-....+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            345666778876666652            7899999998632  211 11221     112456666644  443 444


Q ss_pred             EEe-C--CCeEEEEEccCCCCceEEEEeecCCC-cceEEEEEcCCCeEEEEeC------------------CCeEEEEEC
Q psy15421        114 CGG-L--DNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIVTSSG------------------DMSCALWDI  171 (340)
Q Consensus       114 ~~~-~--d~~v~i~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~~~~~------------------d~~v~iwd~  171 (340)
                      .+. .  +..+.+|++............+.+.. ...+.+...+++.+..+..                  .+.+..+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            443 2  46788988876555555555554432 2234455555555433322                  234444544


Q ss_pred             CCCceEEEEecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC-Cee--eeEecCCCCCeEEEEEec-CCCEEEEEeC
Q psy15421        172 ETGQQCASFIGHTGDVMSLSLAPDMRTFVSG-ACDASAKLWDIRD-GSC--KQTFPGHESDINAVTFFP-NGWAFATGSD  246 (340)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg-~~dg~i~~wd~~~-~~~--~~~~~~h~~~v~~v~~~~-~~~~l~s~s~  246 (340)
                        ++ +..+...-...+.++|+||++.++.+ +..+.|..|++.. +..  .+.+. ..+..-.+++++ +|.+.+++..
T Consensus       211 --~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          211 --ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             --TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEES
T ss_pred             --Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecC
Confidence              32 22333333457899999999876654 4678999999863 332  22342 245567889999 5988887764


Q ss_pred             C
Q psy15421        247 D  247 (340)
Q Consensus       247 d  247 (340)
                      +
T Consensus       287 ~  287 (355)
T 3sre_A          287 N  287 (355)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.33  E-value=0.55  Score=47.73  Aligned_cols=222  Identities=9%  Similarity=0.166  Sum_probs=122.7

Q ss_pred             CCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC
Q psy15421         75 QDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD  154 (340)
Q Consensus        75 ~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  154 (340)
                      ....|.|-|+.++..+..-+...+   +.-.+|..+.+|.-. ..+++|+++.+......  ..   ....|..-.|.+.
T Consensus        46 ~~~~vvIidl~~~~~~~rrpi~Ad---sAIMnP~~~iiALra-g~~lQiFnl~~k~klks--~~---~~e~VvfWkWis~  116 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNPIRRPISAD---SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA--HT---MTDDVTFWKWISL  116 (1630)
T ss_pred             CCceEEEEECCCCCCcccccccch---hhccCCCcceEEEec-CCeEEEeehHHhhhhcc--cc---cCCCceEEEecCC
Confidence            334788888877665422221111   122567777666554 78899999976532111  11   1234555667666


Q ss_pred             CeEEEEeCCCeEEEEECCCC-ceEEEEecC----CCCeEEEEEcCCCCEEEE-E------eCCCcEEEEECCCCeeeeEe
Q psy15421        155 NQIVTSSGDMSCALWDIETG-QQCASFIGH----TGDVMSLSLAPDMRTFVS-G------ACDASAKLWDIRDGSCKQTF  222 (340)
Q Consensus       155 ~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~----~~~v~~~~~~~~~~~~~s-g------~~dg~i~~wd~~~~~~~~~~  222 (340)
                      ..|+.. .+..|.-|++... .+...+..|    ...|..-..+++.+.++. |      .-.|.+.+|..+.+. .+.+
T Consensus       117 ~~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~i  194 (1630)
T 1xi4_A          117 NTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPI  194 (1630)
T ss_pred             CeeEEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhh
Confidence            666554 4678999999643 233333333    335667777787776542 2      245888899876543 3445


Q ss_pred             cCCCCCeEEEEEe--cCCC-EEEEEeC---CCcEEEEeCcCC---cEE------E-EeecCCcccceEEEEEcCCCcEEE
Q psy15421        223 PGHESDINAVTFF--PNGW-AFATGSD---DATCRLFDIRAD---QEL------A-MYSHDNIICGITSVAFSRSGRLLL  286 (340)
Q Consensus       223 ~~h~~~v~~v~~~--~~~~-~l~s~s~---d~~i~iwd~~~~---~~~------~-~~~~~~~~~~i~~~~~s~~~~~l~  286 (340)
                      .||......+...  +... .|+-+..   -+.+.|-++...   .+.      . .+..+....=..++..++.-..+.
T Consensus       195 egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy  274 (1630)
T 1xi4_A          195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF  274 (1630)
T ss_pred             hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEE
Confidence            6665443333222  1111 2221111   156777777432   110      0 111111111134677777777788


Q ss_pred             EEeCCCcEEEEeCCCceeeee
Q psy15421        287 AGYDDFNCNVWDSMKTERAGI  307 (340)
Q Consensus       287 ~g~~d~~i~iw~~~~~~~~~~  307 (340)
                      .-+.-|.+.+||+.++.++..
T Consensus       275 ~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          275 LITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             EEecCceEEEEecccchhhhh
Confidence            888999999999998876553

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.33  E-value=0.39  Score=40.35  Aligned_cols=208  Identities=11%  Similarity=0.069  Sum_probs=95.9

Q ss_pred             EEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceE-EEEEcCCCeEEEEeC-----C------CeEEEEECCCCceEEE
Q psy15421        112 VACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLS-CCRFLDDNQIVTSSG-----D------MSCALWDIETGQQCAS  179 (340)
Q Consensus       112 l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~l~~~~~-----d------~~v~iwd~~~~~~~~~  179 (340)
                      ++.|+  +.+.+||..+..  ... ..++....... ++...++..++.|+.     .      ..+..||+.+++-. .
T Consensus         8 ~~~GG--~~~~~yd~~~~~--W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~   81 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANE--CYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-G   81 (315)
T ss_dssp             EEEET--TEEEEEETTTTE--EEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-E
T ss_pred             EEEcC--CceEEECCCCCe--Eec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-E
Confidence            34455  457788876532  322 22222112222 222234445555652     1      12678888776421 1


Q ss_pred             EecCCCC--eEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCeee--eEecCCCCCeEEEEEecCCCEEEEEeC-
Q psy15421        180 FIGHTGD--VMSLSLAPDMRTFVSGACD--------ASAKLWDIRDGSCK--QTFPGHESDINAVTFFPNGWAFATGSD-  246 (340)
Q Consensus       180 ~~~~~~~--v~~~~~~~~~~~~~sg~~d--------g~i~~wd~~~~~~~--~~~~~h~~~v~~v~~~~~~~~l~s~s~-  246 (340)
                      +.....+  -.+++.. ++..++.|+.+        ..+..||..+++=.  ..++.....- +++. -+++.++.|+. 
T Consensus        82 ~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~  158 (315)
T 4asc_A           82 MPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLS-HMDLVYVIGGKG  158 (315)
T ss_dssp             CCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBC
T ss_pred             CCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEE-ECCEEEEEeCCC
Confidence            1111111  0122222 56666777632        56888998876422  1121111111 2222 45677777776 


Q ss_pred             C-----CcEEEEeCcCCcEEEEeec-CCcccceEEEEEcCCCcEEEEEeCCC-----cEEEEeCCCce--eeeeeccCCc
Q psy15421        247 D-----ATCRLFDIRADQELAMYSH-DNIICGITSVAFSRSGRLLLAGYDDF-----NCNVWDSMKTE--RAGILAGHDN  313 (340)
Q Consensus       247 d-----~~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~g~~d~-----~i~iw~~~~~~--~~~~~~~h~~  313 (340)
                      +     ..+.+||..+.+= ..... ......-.++.+  ++++++.|+.++     .+.+||..+..  .+..+.....
T Consensus       159 ~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~  235 (315)
T 4asc_A          159 SDRKCLNKMCVYDPKKFEW-KELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERS  235 (315)
T ss_dssp             TTSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCB
T ss_pred             CCCcccceEEEEeCCCCeE-EECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccc
Confidence            2     4688888875421 11111 111111222232  678888887654     47788876543  2222221111


Q ss_pred             ceEEEEECCCCCEEEEeeCC
Q psy15421        314 RVSCLGVTEDGMAVATGSWD  333 (340)
Q Consensus       314 ~i~~~~~s~d~~~l~s~s~D  333 (340)
                      .-..+.+  ++..++.|+.+
T Consensus       236 ~~~~~~~--~~~l~v~GG~~  253 (315)
T 4asc_A          236 SLSLVSL--VGTLYAIGGFA  253 (315)
T ss_dssp             SCEEEEE--TTEEEEEEEEE
T ss_pred             ceeEEEE--CCEEEEECCcc
Confidence            1122222  55667777764

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.12  E-value=0.58  Score=40.28  Aligned_cols=225  Identities=11%  Similarity=0.072  Sum_probs=119.9

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeec---CCCcceEEEEEcCC----CeEEEEeC----C---
Q psy15421         98 SWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELP---GHTGYLSCCRFLDD----NQIVTSSG----D---  163 (340)
Q Consensus        98 ~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~----~~l~~~~~----d---  163 (340)
                      .....++|.|+|+++++ ..++.|++++.   .+. .....++   ........+.+.++    +.|..+..    +   
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~---~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP---SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEECS---SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEeC---CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            34568889999985554 55688877752   222 2222221   11234566777664    55444332    3   


Q ss_pred             -CeEEEEECCCC--c-----eE-EEEec-CCCCeEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCCee--
Q psy15421        164 -MSCALWDIETG--Q-----QC-ASFIG-HTGDVMSLSLAPDMRTFVSGAC-------------DASAKLWDIRDGSC--  218 (340)
Q Consensus       164 -~~v~iwd~~~~--~-----~~-~~~~~-~~~~v~~~~~~~~~~~~~sg~~-------------dg~i~~wd~~~~~~--  218 (340)
                       ..|..++....  .     .+ ..+.. .......++|.|++.++++-+.             .|.|.-++.. ++.  
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~  182 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPA  182 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCT
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCC
Confidence             56777776543  1     11 11221 1113467999999987776432             2455555543 220  


Q ss_pred             ------eeEe-cCCCCCeEEEEEec-CCCEEEEEeCCC---cEEEEeCcC----------------CcEEEEeecCCccc
Q psy15421        219 ------KQTF-PGHESDINAVTFFP-NGWAFATGSDDA---TCRLFDIRA----------------DQELAMYSHDNIIC  271 (340)
Q Consensus       219 ------~~~~-~~h~~~v~~v~~~~-~~~~l~s~s~d~---~i~iwd~~~----------------~~~~~~~~~~~~~~  271 (340)
                            ...+ .+|. ....++|+| ++..+++=....   .|.+.....                ..++..+.  ....
T Consensus       183 ~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~~~  259 (354)
T 3a9g_A          183 DNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG--SETW  259 (354)
T ss_dssp             TSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT--TCCC
T ss_pred             CCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC--CCCc
Confidence                  0111 2332 345799999 676665543322   133222100                01111111  1112


Q ss_pred             ceEEEEEc-------CCCcEEEEEeCCCcEEEEeCCCc-ee---eeeeccCCcceEEEEECCCCCEEEEee
Q psy15421        272 GITSVAFS-------RSGRLLLAGYDDFNCNVWDSMKT-ER---AGILAGHDNRVSCLGVTEDGMAVATGS  331 (340)
Q Consensus       272 ~i~~~~~s-------~~~~~l~~g~~d~~i~iw~~~~~-~~---~~~~~~h~~~i~~~~~s~d~~~l~s~s  331 (340)
                      .+..++|.       .+|.++++....+.|...+.... +.   ...+.+-...+..+++.|||.++++..
T Consensus       260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            46788884       46778877777788888876542 22   122333345789999999998777654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.89  E-value=1.7  Score=43.78  Aligned_cols=171  Identities=12%  Similarity=0.097  Sum_probs=98.7

Q ss_pred             CCeEEEEECCCCceEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeee-EecCCCCCeEEEEEecCCCE
Q psy15421        163 DMSCALWDIETGQQCASF-IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQ-TFPGHESDINAVTFFPNGWA  240 (340)
Q Consensus       163 d~~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~  240 (340)
                      .|.|.++++..++..... ....+.|.+++--. | ++++| ...+|++|++...+..+ ....+. .|..+.....+.+
T Consensus       863 ~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~-g-~Lla~-ig~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~  938 (1158)
T 3ei3_A          863 QGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN-G-KLLAS-INSTVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDF  938 (1158)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEESSCEEEEEEET-T-EEEEE-ETTEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTE
T ss_pred             ceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeC-C-EEEEE-cCCEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCE
Confidence            477999998744322111 23467788877543 4 44443 45899999998654333 111111 1323333334678


Q ss_pred             EEEEeCCCcEEEEeCcC-CcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc-------e-eeeeeccC
Q psy15421        241 FATGSDDATCRLFDIRA-DQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT-------E-RAGILAGH  311 (340)
Q Consensus       241 l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~-------~-~~~~~~~h  311 (340)
                      ++.|..-..+.+..++. ...+..+..+.....++++.|-.+ ..++.+..+|++.+......       . ....-.-|
T Consensus       939 I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fh 1017 (1158)
T 3ei3_A          939 ILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFH 1017 (1158)
T ss_dssp             EEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEE
T ss_pred             EEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEe
Confidence            99998888888876542 334444544444445888888644 46777899999998864321       1 11111223


Q ss_pred             -CcceEEEE---ECCC---------CCEEEEeeCCCcEEe
Q psy15421        312 -DNRVSCLG---VTED---------GMAVATGSWDSFLRI  338 (340)
Q Consensus       312 -~~~i~~~~---~s~d---------~~~l~s~s~D~~i~i  338 (340)
                       .+.|+++.   +.+.         ...++-++.+|.|-+
T Consensus      1018 lG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~ 1057 (1158)
T 3ei3_A         1018 LGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGL 1057 (1158)
T ss_dssp             CSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEE
T ss_pred             CCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEE
Confidence             34567664   2332         224677888888754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.87  E-value=0.066  Score=42.55  Aligned_cols=102  Identities=9%  Similarity=0.014  Sum_probs=62.5

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcE------EEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCC
Q psy15421        228 DINAVTFFPNGWAFATGSDDATCRLFDIRADQE------LAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK  301 (340)
Q Consensus       228 ~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~------~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~  301 (340)
                      .+..++|+|+|..++.  .+|.++-.+..+.+.      -..+...... .-.++.|.|+|.+.++  .||.|+-++-.+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            5669999999987777  677766665533111      1111111111 1368899999999988  568888776432


Q ss_pred             ceeee-----eeccC--CcceEEEEECCCCCEEEEeeCCCcE
Q psy15421        302 TERAG-----ILAGH--DNRVSCLGVTEDGMAVATGSWDSFL  336 (340)
Q Consensus       302 ~~~~~-----~~~~h--~~~i~~~~~s~d~~~l~s~s~D~~i  336 (340)
                      .....     ...+.  =..+..|.|.|+|.+.+..  |+.+
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            11111     11111  1467899999999866655  7765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.68  E-value=0.24  Score=42.53  Aligned_cols=52  Identities=13%  Similarity=0.107  Sum_probs=27.9

Q ss_pred             CCCeEEEEeC-C---------CeEEEEeCCCCCeeEEeeCC--CCcEEEEEECCCCCEEEEEeCC
Q psy15421         66 DSRNLVSASQ-D---------GKLIVWDSYTTNKVHAIPLR--SSWVMTCAYAPSGSFVACGGLD  118 (340)
Q Consensus        66 ~~~~l~s~~~-d---------~~i~iwd~~~~~~~~~~~~~--~~~i~~v~~~~~~~~l~~~~~d  118 (340)
                      ++++++.||. +         ..+.++|..+.+....-...  ...-.+++. .++++++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence            5666666665 2         35788888776533221111  111122222 567788888765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.62  E-value=0.85  Score=38.30  Aligned_cols=215  Identities=13%  Similarity=0.120  Sum_probs=99.4

Q ss_pred             eEEEEeCCCCCeeEE-eeCCCCcEEEEEECCCCCEEEEEeCC----C-------eEEEEEccCCCCceEEEEeecCCCcc
Q psy15421         78 KLIVWDSYTTNKVHA-IPLRSSWVMTCAYAPSGSFVACGGLD----N-------ICSIYSLKTREGNVRVSRELPGHTGY  145 (340)
Q Consensus        78 ~i~iwd~~~~~~~~~-~~~~~~~i~~v~~~~~~~~l~~~~~d----~-------~v~i~~~~~~~~~~~~~~~~~~~~~~  145 (340)
                      .+..||..+.+.... .+.............++..++.|+..    +       .+.+||..+.  .......++.....
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~  102 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS--EWVGLPPLPSARCL  102 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTT--EEEECSCBSSCBCS
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCC--cEEECCCCCccccc
Confidence            378888877664331 11111112223344577777888731    1       1555665432  22222222221111


Q ss_pred             eEEEEEcCCCeEEEEeCC-------CeEEEEECCCCceEEEEecCCCC--eEEEEEcCCCCEEEEEeC------CCcEEE
Q psy15421        146 LSCCRFLDDNQIVTSSGD-------MSCALWDIETGQQCASFIGHTGD--VMSLSLAPDMRTFVSGAC------DASAKL  210 (340)
Q Consensus       146 v~~~~~~~~~~l~~~~~d-------~~v~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~sg~~------dg~i~~  210 (340)
                      ...+. .++..++.|+.+       ..+.+||+.+++-... ......  -.+++. .++++++.|+.      -..+..
T Consensus       103 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~  179 (318)
T 2woz_A          103 FGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFI  179 (318)
T ss_dssp             CEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEE
T ss_pred             cceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEE
Confidence            11222 244445555543       2477888877542211 111111  012222 35667777764      245889


Q ss_pred             EECCCCeeee--EecCCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCcCCcEEEEee-cCCcccceEEEEEcCCC
Q psy15421        211 WDIRDGSCKQ--TFPGHESDINAVTFFPNGWAFATGSDD-----ATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSG  282 (340)
Q Consensus       211 wd~~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~  282 (340)
                      ||+.+++=..  .++...... +++. -+++.++.|+.+     ..+.+||..+.+=. ... .......-..+.+  ++
T Consensus       180 yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~~~--~~  254 (318)
T 2woz_A          180 YNPKKGDWKDLAPMKTPRSMF-GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWE-VMTEFPQERSSISLVSL--AG  254 (318)
T ss_dssp             EETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEE-ECCCCSSCCBSCEEEEE--TT
T ss_pred             EcCCCCEEEECCCCCCCcccc-eEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEE-ECCCCCCcccceEEEEE--CC
Confidence            9988765221  111111111 2222 256777777654     34678887654311 111 1111111122222  56


Q ss_pred             cEEEEEeCC--------------CcEEEEeCCCc
Q psy15421        283 RLLLAGYDD--------------FNCNVWDSMKT  302 (340)
Q Consensus       283 ~~l~~g~~d--------------~~i~iw~~~~~  302 (340)
                      ++++.|+.+              ..+.+||..+.
T Consensus       255 ~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          255 SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             EEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred             EEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence            788887754              34677776554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.40  E-value=1.1  Score=42.55  Aligned_cols=193  Identities=10%  Similarity=0.089  Sum_probs=97.9

Q ss_pred             CCCCeEEEEeCC----CeEEEEeCCCCCeeEEe-e-----CC-C-CcEEEEEECCCCCEEEEEeCCC------eEEEEEc
Q psy15421         65 SDSRNLVSASQD----GKLIVWDSYTTNKVHAI-P-----LR-S-SWVMTCAYAPSGSFVACGGLDN------ICSIYSL  126 (340)
Q Consensus        65 ~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~-~-----~~-~-~~i~~v~~~~~~~~l~~~~~d~------~v~i~~~  126 (340)
                      .++..++.||.+    ..+.++|..+.+....- +     .. . ..-..+.+..+++.++.||.++      .+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            466777777754    35778888776543322 1     11 1 1122333333777888887543      4566776


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCC--eEEEEECCCCceEEEE-----ecCCCCeEEEEEcCC-CCE
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDM--SCALWDIETGQQCASF-----IGHTGDVMSLSLAPD-MRT  198 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~--~v~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~-~~~  198 (340)
                      .+.  .+.....++.....-.++.+.++..++.|+.++  .+.+||+.+++-...-     ........++.+..+ ++.
T Consensus       476 ~t~--~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          476 KTR--EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             TTT--EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             CCC--cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence            542  222222222111111222223445556665433  6899999876422111     111112233555555 567


Q ss_pred             EEEEeC--C-----CcEEEEECCCCee-----eeEecC---CCCCeEEEEEecCCCEEEEEeC--------CCcEEEEeC
Q psy15421        199 FVSGAC--D-----ASAKLWDIRDGSC-----KQTFPG---HESDINAVTFFPNGWAFATGSD--------DATCRLFDI  255 (340)
Q Consensus       199 ~~sg~~--d-----g~i~~wd~~~~~~-----~~~~~~---h~~~v~~v~~~~~~~~l~s~s~--------d~~i~iwd~  255 (340)
                      ++.|+.  +     ..+..||+.+..-     ...+..   ....-.+++...++..++.|+.        ...+.+||.
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~  633 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDP  633 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred             EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence            777765  2     4588899887651     111111   1111113333444777888874        345889998


Q ss_pred             cCCc
Q psy15421        256 RADQ  259 (340)
Q Consensus       256 ~~~~  259 (340)
                      .+.+
T Consensus       634 ~t~~  637 (695)
T 2zwa_A          634 LSET  637 (695)
T ss_dssp             TTTE
T ss_pred             CCCe
Confidence            7653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.31  E-value=1.2  Score=38.13  Aligned_cols=238  Identities=17%  Similarity=0.181  Sum_probs=122.9

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCee--EEee----CCCCcEEEEEECCC----CCEEEEE-
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKV--HAIP----LRSSWVMTCAYAPS----GSFVACG-  115 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~----~~~~~i~~v~~~~~----~~~l~~~-  115 (340)
                      ....+-.....-+.|+|.||+.++++--..|.|++++..+++..  ..++    ........++++|+    +.+.++- 
T Consensus        23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            33444445566789999999998877655899999986555432  1121    12345789999995    4333332 


Q ss_pred             -eCCCeEEEEEccCCC-------CceEEEEeec---CCCcceEEEEEcCCCeEEEEeC--------------CCeEEEEE
Q psy15421        116 -GLDNICSIYSLKTRE-------GNVRVSRELP---GHTGYLSCCRFLDDNQIVTSSG--------------DMSCALWD  170 (340)
Q Consensus       116 -~~d~~v~i~~~~~~~-------~~~~~~~~~~---~~~~~v~~~~~~~~~~l~~~~~--------------d~~v~iwd  170 (340)
                       ..++.|.-|.+....       ....+...++   .|.  -..+.|.+++.|..+.+              .+.|.-.+
T Consensus       103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~  180 (347)
T 3das_A          103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMT  180 (347)
T ss_dssp             CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEEC
T ss_pred             cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEe
Confidence             234445555554311       1111222233   232  33466777765544322              24444444


Q ss_pred             CCCCc-------eEEEE-ecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCee------------------eeEec
Q psy15421        171 IETGQ-------QCASF-IGHTGDVMSLSLAPDMRTFVSG-ACDASAKLWDIRDGSC------------------KQTFP  223 (340)
Q Consensus       171 ~~~~~-------~~~~~-~~~~~~v~~~~~~~~~~~~~sg-~~dg~i~~wd~~~~~~------------------~~~~~  223 (340)
                      ....-       ....+ .+|. ....++|+|++.++++= +.|+.=.|--+..+..                  +..+.
T Consensus       181 ~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~  259 (347)
T 3das_A          181 PDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS  259 (347)
T ss_dssp             TTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC
T ss_pred             CCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC
Confidence            43210       00111 2343 35689999988776652 2333222222222211                  11222


Q ss_pred             CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEE---EEeecCCcccceEEEEEcCCCcEEEEEe
Q psy15421        224 GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL---AMYSHDNIICGITSVAFSRSGRLLLAGY  289 (340)
Q Consensus       224 ~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~g~  289 (340)
                      .+......++|. +|..|...-..+.|....+......   ..+ .......+..++..|||.++++-.
T Consensus       260 ~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~-l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          260 TDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAF-LEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEE-STTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEe-ecCCCCCccEEEECCCCcEEEEEc
Confidence            222345677776 4556666666666666666543321   111 112234688889999987766543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.59  E-value=1.7  Score=36.33  Aligned_cols=159  Identities=13%  Similarity=0.122  Sum_probs=74.1

Q ss_pred             EEEEECCCCceEE--EEecCCCCeEEEEEcCCCCEEEEEeCC-------CcEEEEECCCCeeee--EecCCCCCeEEEEE
Q psy15421        166 CALWDIETGQQCA--SFIGHTGDVMSLSLAPDMRTFVSGACD-------ASAKLWDIRDGSCKQ--TFPGHESDINAVTF  234 (340)
Q Consensus       166 v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~sg~~d-------g~i~~wd~~~~~~~~--~~~~h~~~v~~v~~  234 (340)
                      +..||+.+++-..  .+....... +++.. +++.++.|+.+       ..+..||..+++=..  .++.....- +++.
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~  156 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLF-GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS  156 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSC-EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE
T ss_pred             EEEEeCCCCcEEECCCCCcccccc-ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE
Confidence            6778887654221  111111111 22222 56677777754       357788887764221  111111111 2222


Q ss_pred             ecCCCEEEEEeC------CCcEEEEeCcCCcEEEEeec-CCcccceEEEEEcCCCcEEEEEeCC-----CcEEEEeCCCc
Q psy15421        235 FPNGWAFATGSD------DATCRLFDIRADQELAMYSH-DNIICGITSVAFSRSGRLLLAGYDD-----FNCNVWDSMKT  302 (340)
Q Consensus       235 ~~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~g~~d-----~~i~iw~~~~~  302 (340)
                       .++..++.|+.      -..+.+||..+.+= ..... ......-.++.+  ++++++.|+.+     ..+.+||..+.
T Consensus       157 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          157 -HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW-KDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             -ETTEEEEECCEESSSCBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             -ECCEEEEEcCCCCCCCccceEEEEcCCCCEE-EECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCC
Confidence             46777777764      23588899876431 11111 111111222232  57888887654     24667886543


Q ss_pred             e--eeeeeccCCcceEEEEECCCCCEEEEeeCC
Q psy15421        303 E--RAGILAGHDNRVSCLGVTEDGMAVATGSWD  333 (340)
Q Consensus       303 ~--~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D  333 (340)
                      +  .+..+......-..+.  -++..++.|+.+
T Consensus       233 ~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~  263 (318)
T 2woz_A          233 KWEVMTEFPQERSSISLVS--LAGSLYAIGGFA  263 (318)
T ss_dssp             CEEECCCCSSCCBSCEEEE--ETTEEEEECCBC
T ss_pred             eEEECCCCCCcccceEEEE--ECCEEEEECCee
Confidence            2  2222222111112222  255677777654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.47  E-value=3.4  Score=39.13  Aligned_cols=193  Identities=14%  Similarity=0.163  Sum_probs=96.1

Q ss_pred             CCCCEEEEEeCC----CeEEEEEccCCCCceEEEE-e-----ecCCCcceEEEEEc-CCCeEEEEeCC------CeEEEE
Q psy15421        107 PSGSFVACGGLD----NICSIYSLKTREGNVRVSR-E-----LPGHTGYLSCCRFL-DDNQIVTSSGD------MSCALW  169 (340)
Q Consensus       107 ~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~-~-----~~~~~~~v~~~~~~-~~~~l~~~~~d------~~v~iw  169 (340)
                      .++..++.||.+    +.+.+||..+.  .+.... .     .+.....-..+... ++..++.|+.+      ..+.+|
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~--~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~y  473 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYD--KIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIF  473 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSS--CEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCC--eEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEE
Confidence            456677777753    35667776543  232222 1     11111112222232 33345555432      357788


Q ss_pred             ECCCCceEE--EEecCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeeeeE-----ecCCCCCeEEEEEecC-CC
Q psy15421        170 DIETGQQCA--SFIGHTGDVMSLSLAPDMRTFVSGACDA--SAKLWDIRDGSCKQT-----FPGHESDINAVTFFPN-GW  239 (340)
Q Consensus       170 d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~sg~~dg--~i~~wd~~~~~~~~~-----~~~h~~~v~~v~~~~~-~~  239 (340)
                      |+.+++-..  .+.... .-.+++...+++.++.|+.++  .+.+||..++.=...     .+.....-.++.+..+ ++
T Consensus       474 d~~t~~W~~~~~~p~~R-~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~  552 (695)
T 2zwa_A          474 DMKTREWSMIKSLSHTR-FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ  552 (695)
T ss_dssp             ETTTTEEEECCCCSBCC-BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred             eCCCCcEEECCCCCCCc-ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE
Confidence            887753211  111111 112333334788888887654  789999887652111     1111111223555555 67


Q ss_pred             EEEEEeC--C-----CcEEEEeCcCCcE-----EEEeec--CCcccceEEEEEcCCCcEEEEEeCC--------CcEEEE
Q psy15421        240 AFATGSD--D-----ATCRLFDIRADQE-----LAMYSH--DNIICGITSVAFSRSGRLLLAGYDD--------FNCNVW  297 (340)
Q Consensus       240 ~l~s~s~--d-----~~i~iwd~~~~~~-----~~~~~~--~~~~~~i~~~~~s~~~~~l~~g~~d--------~~i~iw  297 (340)
                      .++.|+.  +     ..+..||..+..-     ......  ......-.+ +...++++++.|+.+        ..+.+|
T Consensus       553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~y  631 (695)
T 2zwa_A          553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI-KYITPRKLLIVGGTSPSGLFDRTNSIISL  631 (695)
T ss_dssp             EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEE-EEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred             EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceE-EEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence            7788776  2     3588899876541     111111  011111222 333347888888743        458899


Q ss_pred             eCCCce
Q psy15421        298 DSMKTE  303 (340)
Q Consensus       298 ~~~~~~  303 (340)
                      |..+..
T Consensus       632 d~~t~~  637 (695)
T 2zwa_A          632 DPLSET  637 (695)
T ss_dssp             ETTTTE
T ss_pred             ECCCCe
Confidence            976554

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.37  E-value=1.9  Score=35.74  Aligned_cols=217  Identities=9%  Similarity=-0.024  Sum_probs=104.6

Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEE
Q psy15421        100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCAS  179 (340)
Q Consensus       100 i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~  179 (340)
                      |..++....  +.+.-. |+.+..|-.....+.. ...  . ....+..+.......++. . |+.|..|-....-++..
T Consensus        26 i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg-~p~--~-~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~   96 (282)
T 3qhy_B           26 VDAIAGGYF--HGLALK-GGKVLGWGANLNGQLT-MPA--A-TQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTV   96 (282)
T ss_dssp             CCEEEECSS--EEEEEE-TTEEEEEECCSSSTTS-CCG--G-GGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCC
T ss_pred             CcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCC-CCc--c-CCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCC
Confidence            445544432  222224 7888888654322111 100  0 111233333222223333 4 88888887543211111


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCc
Q psy15421        180 FIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ  259 (340)
Q Consensus       180 ~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  259 (340)
                      -......|..++...+...++  . ||.|..|-....-....-......|..++.-..  +.+.-. ||.++.|-.....
T Consensus        97 P~~~~~~v~~ia~G~~hs~al--~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~g  170 (282)
T 3qhy_B           97 PAEARSGVDAIAAGAWASYAL--K-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFG  170 (282)
T ss_dssp             CGGGSSSEEEEEEETTEEEEE--E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTS
T ss_pred             CcccCCCeEEEECcCCEEEEE--e-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCC
Confidence            111123577776665543343  4 899999975432111111112345666655433  323333 7999999765322


Q ss_pred             EEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        260 ELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       260 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      .+.. + ......|..++-.. ...++.  .||.+..|-......+..-..-...|..++...+....++   ||.|..|
T Consensus       171 qlg~-p-~~~~~~v~~i~~G~-~hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~v~~w  242 (282)
T 3qhy_B          171 QTTV-P-AEAQSGVDDVAGGI-FHSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGKVIAW  242 (282)
T ss_dssp             TTSC-C-GGGGSSEEEEEECS-SEEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTEEEEE
T ss_pred             CCCC-c-eecCCCeEEEEecC-CEEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCEEEEe
Confidence            2210 0 11122366665543 344444  5899999975443333222222345777776666544444   8888877

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.12  E-value=6.2  Score=37.62  Aligned_cols=264  Identities=16%  Similarity=0.089  Sum_probs=138.4

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEE
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV  135 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  135 (340)
                      ..|.++....++. |..|..+| +..+|..+.+...........|.++.. .++. +-.+..+ -+..++..+..  ...
T Consensus        63 ~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~--~~~  135 (758)
T 3ott_A           63 TRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRK--LTS  135 (758)
T ss_dssp             SCEEEEEEETTTE-EEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCC--EEE
T ss_pred             ceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCe--EEE
Confidence            4688887777664 44455555 788998765322111111234665544 3454 4445555 46667764422  111


Q ss_pred             EEee-c-CCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecC------CCCeEEEEEcCCCCEEEEEeCCCc
Q psy15421        136 SREL-P-GHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGH------TGDVMSLSLAPDMRTFVSGACDAS  207 (340)
Q Consensus       136 ~~~~-~-~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~sg~~dg~  207 (340)
                      .... . .....+.++....++.+-.++.+ -+..++..+++.. .+...      ...|.++...+++..+-.|.. +-
T Consensus       136 ~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~G  212 (758)
T 3ott_A          136 FDTRRNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GY  212 (758)
T ss_dssp             ECHHHHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EE
T ss_pred             eccCCCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CC
Confidence            1000 0 11234555555455666556654 4777887765432 22111      123778888777665444553 45


Q ss_pred             EEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCC------cccceEEEEEcCC
Q psy15421        208 AKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDN------IICGITSVAFSRS  281 (340)
Q Consensus       208 i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~------~~~~i~~~~~s~~  281 (340)
                      +..+|..+++......-....|.++...++|...+ |+. +-+.+++..+.+... +.+..      ....|.++...++
T Consensus       213 l~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~D~~  289 (758)
T 3ott_A          213 LFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQH-IIHDSRNIQSLTNNIIWNIFADQE  289 (758)
T ss_dssp             EEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEE-ECCCTTCTTSCSCSCEEEEEECTT
T ss_pred             CeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEE-EEcCCCCcCcCCcCeEEEEEEcCC
Confidence            78888877654221111123578888887776554 444 457788876543322 21110      1124788888887


Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeeeec-------cCCcceEEEEECCCCCEEEEeeCCCcEE
Q psy15421        282 GRLLLAGYDDFNCNVWDSMKTERAGILA-------GHDNRVSCLGVTEDGMAVATGSWDSFLR  337 (340)
Q Consensus       282 ~~~l~~g~~d~~i~iw~~~~~~~~~~~~-------~h~~~i~~~~~s~d~~~l~s~s~D~~i~  337 (340)
                      |.+- .|+..| +.++.. .. ....+.       .....|.++...++|.+.+. +.+|..+
T Consensus       290 g~lW-iGT~~G-l~~~~~-~~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~~  347 (758)
T 3ott_A          290 HNIW-LGTDYG-ISLSRY-NS-ALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGLIR  347 (758)
T ss_dssp             CCEE-EEESSS-EEEECC-CC--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEEEE
T ss_pred             CCEE-EEeCCc-cccccc-CC-ceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCccee
Confidence            7654 455566 554432 11 111110       11346888888888876554 4555443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.07  E-value=4.7  Score=36.06  Aligned_cols=107  Identities=11%  Similarity=0.063  Sum_probs=61.7

Q ss_pred             CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe---eeeEec-----C----CCCCeEEEEEecC----CCEEEEEeCC
Q psy15421        185 GDVMSLSLAPDMR-TFVSGACDASAKLWDIRDGS---CKQTFP-----G----HESDINAVTFFPN----GWAFATGSDD  247 (340)
Q Consensus       185 ~~v~~~~~~~~~~-~~~sg~~dg~i~~wd~~~~~---~~~~~~-----~----h~~~v~~v~~~~~----~~~l~s~s~d  247 (340)
                      .....|+|.|++. .++.+...|.|++++.....   .+..+.     +    .+.....|+|+|+    +..+++-+.+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4578999999986 45566789999999753221   122221     1    1345788999996    5566655432


Q ss_pred             C------------cEEEEeCcC----------CcEEEEeecCCcccceEEEEEcCCCcEEEEEeCC
Q psy15421        248 A------------TCRLFDIRA----------DQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD  291 (340)
Q Consensus       248 ~------------~i~iwd~~~----------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d  291 (340)
                      .            .|.-|.+..          .+.+..............++|.|||+++++-++.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence            1            333354431          1222222211111235789999999877765543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.38  E-value=4.1  Score=33.65  Aligned_cols=246  Identities=13%  Similarity=0.062  Sum_probs=117.1

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEE
Q psy15421         57 KIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVS  136 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~  136 (340)
                      .|..++-...  ..+.-. ||.|+.|-......+-.-......|..++...+-..++  . |+.+..|-.....+.- ..
T Consensus        25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~Gqlg-~P   97 (282)
T 3qhy_B           25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL--K-DGEVIAWGGNEDGQTT-VP   97 (282)
T ss_dssp             SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE--E-TTEEEEEECCTTSTTC-CC
T ss_pred             CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE--E-CCEEEEeeCCCCCCCC-CC
Confidence            4556654433  222234 89999996543221110001112355555443322222  4 7888877654322111 11


Q ss_pred             EeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy15421        137 RELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG  216 (340)
Q Consensus       137 ~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~  216 (340)
                      ..+   ...+..+..... ..++-. |+.|..|-....-++.........+..++.-.+...++  . ||.|..|-....
T Consensus        98 ~~~---~~~v~~ia~G~~-hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~  169 (282)
T 3qhy_B           98 AEA---RSGVDAIAAGAW-ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV--K-NGGVIAWGDNYF  169 (282)
T ss_dssp             GGG---SSSEEEEEEETT-EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--E-TTEEEEEECCTT
T ss_pred             ccc---CCCeEEEECcCC-EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE--E-CCEEEEecCCCC
Confidence            111   123333332222 333334 89999997543221111111223466666544433333  3 789988865432


Q ss_pred             eeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEE
Q psy15421        217 SCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNV  296 (340)
Q Consensus       217 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~i  296 (340)
                      -.+..-..-...|..|+.-... .++.  .||.++.|-......+. .+. .....|..++-... ..++..  |+.+..
T Consensus       170 gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg-~p~-~~~~~v~~i~~G~~-h~~al~--~g~v~~  241 (282)
T 3qhy_B          170 GQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTT-VPT-EALSGVSAIASGEW-YSLALK--NGKVIA  241 (282)
T ss_dssp             STTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTC-CCG-GGGSSCCEEEECSS-CEEEEE--TTEEEE
T ss_pred             CCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCC-CCc-ccCCCceEEEcCCC-EEEEEE--CCEEEE
Confidence            1111111113457676655433 2333  59999999765432221 111 11223666665443 344443  899999


Q ss_pred             EeCCCceeeeeeccCCcceEEEEECCCCCEEEE
Q psy15421        297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVAT  329 (340)
Q Consensus       297 w~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s  329 (340)
                      |-.....+...    ...|..++..+...+.++
T Consensus       242 wG~n~~gq~~v----~~~v~~iaaG~~h~~al~  270 (282)
T 3qhy_B          242 WGSSRTAPSSV----QSGVSSIEAGPNAAYALK  270 (282)
T ss_dssp             ESTTCCCCGGG----SSCEEEEEECSSCEEEEE
T ss_pred             ecCCCCccccC----CCCcEEEEECcCeEEEEe
Confidence            97554433332    346777777776655444

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.21  E-value=1  Score=40.97  Aligned_cols=102  Identities=15%  Similarity=0.129  Sum_probs=64.4

Q ss_pred             eEEEEEecCCCEEEEEe-CCCcEEEEeCcCCcE-----E-----EEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEE
Q psy15421        229 INAVTFFPNGWAFATGS-DDATCRLFDIRADQE-----L-----AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW  297 (340)
Q Consensus       229 v~~v~~~~~~~~l~s~s-~d~~i~iwd~~~~~~-----~-----~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw  297 (340)
                      ...+.++|||++++.++ -+.++.++|+.....     +     ..........+..-.+|.++|.-..+-.-|..|--|
T Consensus       325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkW  404 (638)
T 3sbq_A          325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKW  404 (638)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred             CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEE
Confidence            34688999999876654 488999999874211     0     011122234457889999999766677789999999


Q ss_pred             eCCCc----------eeeeeeccCCcceEEE-----EECCCCCEEEEe
Q psy15421        298 DSMKT----------ERAGILAGHDNRVSCL-----GVTEDGMAVATG  330 (340)
Q Consensus       298 ~~~~~----------~~~~~~~~h~~~i~~~-----~~s~d~~~l~s~  330 (340)
                      ++...          +.+..+.-|-.+---.     .-.|||++|++.
T Consensus       405 ni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l  452 (638)
T 3sbq_A          405 NMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL  452 (638)
T ss_dssp             EHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred             eccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence            97543          2334444343221111     225788888875

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=91.63  E-value=6.8  Score=34.65  Aligned_cols=176  Identities=10%  Similarity=0.146  Sum_probs=105.2

Q ss_pred             CCeEEEEeCCC-CCeeEEeeCC----CCcEEEEEECCCCCEEEEEeC-------CCeEEEEEccCCCCceEEEEeecCCC
Q psy15421         76 DGKLIVWDSYT-TNKVHAIPLR----SSWVMTCAYAPSGSFVACGGL-------DNICSIYSLKTREGNVRVSRELPGHT  143 (340)
Q Consensus        76 d~~i~iwd~~~-~~~~~~~~~~----~~~i~~v~~~~~~~~l~~~~~-------d~~v~i~~~~~~~~~~~~~~~~~~~~  143 (340)
                      +..|+-|+++. ......+..|    +..|..-..+++.+.++..|-       .|.+++|....+     ....+.+|.
T Consensus       124 ~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-----~sQ~ieGha  198 (494)
T 1bpo_A          124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHA  198 (494)
T ss_dssp             SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-----CEEEECCSE
T ss_pred             CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-----ccchheeee
Confidence            34788888764 2334444443    345777777888888765442       367888887543     344567777


Q ss_pred             cceEEEEEcCC---CeEEE-EeC---CCeEEEEECCCC---c------eEEEEe---cCCCCeEEEEEcCCCCEEEEEeC
Q psy15421        144 GYLSCCRFLDD---NQIVT-SSG---DMSCALWDIETG---Q------QCASFI---GHTGDVMSLSLAPDMRTFVSGAC  204 (340)
Q Consensus       144 ~~v~~~~~~~~---~~l~~-~~~---d~~v~iwd~~~~---~------~~~~~~---~~~~~v~~~~~~~~~~~~~sg~~  204 (340)
                      .....+....+   ..+++ +..   .+.+.+-++...   .      .+..+.   ...+...++..++....++.-..
T Consensus       199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK  278 (494)
T 1bpo_A          199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK  278 (494)
T ss_dssp             EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET
T ss_pred             eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec
Confidence            65544443221   12333 322   378888888432   1      111111   23456778999998888888899


Q ss_pred             CCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCc
Q psy15421        205 DASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIR  256 (340)
Q Consensus       205 dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  256 (340)
                      -|.|.+||+.++.++..-+--..+|-.-+-.....-++.....|.|.--.+.
T Consensus       279 ~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~  330 (494)
T 1bpo_A          279 YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE  330 (494)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred             CceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEc
Confidence            9999999999999876555444555444444443344444455555444433

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=91.57  E-value=1.6  Score=37.17  Aligned_cols=112  Identities=7%  Similarity=0.026  Sum_probs=69.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCeeeeEecCC-CCCeEEEEEe--c-CCCEEEEE-eCCCcEEEEeCcCCcEEEEeecCCccc
Q psy15421        197 RTFVSGACDASAKLWDIRDGSCKQTFPGH-ESDINAVTFF--P-NGWAFATG-SDDATCRLFDIRADQELAMYSHDNIIC  271 (340)
Q Consensus       197 ~~~~sg~~dg~i~~wd~~~~~~~~~~~~h-~~~v~~v~~~--~-~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~  271 (340)
                      ..++.++.||.|.-.|..+|+..-.++.. ..++....-.  + ++..++.. ..||.|..++..++.....+.......
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            36788999999999999999887666532 1222221100  1 23334443 589999999987765444333222110


Q ss_pred             ceEEEEEc-----------CCCcEEEEEeCCCcEEEEeCCCceeeeeec
Q psy15421        272 GITSVAFS-----------RSGRLLLAGYDDFNCNVWDSMKTERAGILA  309 (340)
Q Consensus       272 ~i~~~~~s-----------~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~  309 (340)
                       ..-+...           ..+..+.+|+.++.+...|..+++.+-.+.
T Consensus        91 -~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           91 -TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             -TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             -ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence             1111211           145678899999999999999998877664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=91.49  E-value=9.9  Score=39.05  Aligned_cols=159  Identities=11%  Similarity=0.212  Sum_probs=90.2

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCC-CeeEEeeCC----CCcEEEEEECCCCCEEEEEe-------CCCeEEE
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTT-NKVHAIPLR----SSWVMTCAYAPSGSFVACGG-------LDNICSI  123 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~----~~~i~~v~~~~~~~~l~~~~-------~d~~v~i  123 (340)
                      .+|.-=.|-.+... +-. .+..|+-|++... .....+..|    +..|..-..+++.+.++..|       -.|.+++
T Consensus       106 e~VvfWkWis~~~l-~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQL  183 (1630)
T 1xi4_A          106 DDVTFWKWISLNTV-ALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL  183 (1630)
T ss_pred             CCceEEEecCCCee-EEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeee
Confidence            34555555443332 222 2347999998642 222233322    34566667778888776543       3477888


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEc---CCCeEEEEe----CCCeEEEEECCCC---c-e-----EEEEec---CC
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFL---DDNQIVTSS----GDMSCALWDIETG---Q-Q-----CASFIG---HT  184 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~----~d~~v~iwd~~~~---~-~-----~~~~~~---~~  184 (340)
                      |....+     ....+.||..........   ....+++-.    ..+.+.|-++...   . .     +..+..   ..
T Consensus       184 yS~er~-----~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~  258 (1630)
T 1xi4_A          184 YSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN  258 (1630)
T ss_pred             eecccc-----cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCccccc
Confidence            887543     233445665544333321   112233321    1367888887432   1 1     111111   24


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeE
Q psy15421        185 GDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQT  221 (340)
Q Consensus       185 ~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~  221 (340)
                      +...++..++....++.-..-|.|.++|+.++.++..
T Consensus       259 Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          259 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             CcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence            4566788888877888888999999999999987643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=89.18  E-value=12  Score=33.37  Aligned_cols=61  Identities=18%  Similarity=0.378  Sum_probs=38.6

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCee--EEeeC------CCCcEEEEEECCC---CCEEEEE
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKV--HAIPL------RSSWVMTCAYAPS---GSFVACG  115 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~------~~~~i~~v~~~~~---~~~l~~~  115 (340)
                      ...-+.|+|.|+|+++++--..+.|++++..+++..  ..+..      .......++|+|+   +.+|+..
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~   97 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence            345679999999997776544457888876555432  22221      1345778999995   4444433

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=86.55  E-value=22  Score=33.71  Aligned_cols=269  Identities=12%  Similarity=0.034  Sum_probs=142.3

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC--eeEEee-------CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN--KVHAIP-------LRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~-------~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      ..|.++.-.++|.+-+ |..+| +..++..+++  ....+.       .....|.++.-..++.+.+ |. ++-+..++.
T Consensus       324 ~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~  399 (758)
T 3ott_A          324 NQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDY  399 (758)
T ss_dssp             CBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEET
T ss_pred             ceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCc
Confidence            4688888877777654 44555 5566654321  111111       1224588888788887665 33 345777876


Q ss_pred             cCCCCceEEEEeecC----CCcceEEEEEcCCCeEEEEeCCCeEEEEECCCC-----ceE---EEEec----CCCCeEEE
Q psy15421        127 KTREGNVRVSRELPG----HTGYLSCCRFLDDNQIVTSSGDMSCALWDIETG-----QQC---ASFIG----HTGDVMSL  190 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~-----~~~---~~~~~----~~~~v~~~  190 (340)
                      .++.  .........    ....|.++....++.|-.|+..+-+..+|..+.     ...   ..+..    ....|.++
T Consensus       400 ~~~~--~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i  477 (758)
T 3ott_A          400 ATRQ--FIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQI  477 (758)
T ss_dssp             TTTE--EEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEE
T ss_pred             CCCc--EEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeE
Confidence            5432  211111111    123466665555677777776666788876431     111   11111    12348888


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecC-C--CCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecC
Q psy15421        191 SLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG-H--ESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHD  267 (340)
Q Consensus       191 ~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~-h--~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  267 (340)
                      ...+++.+.+.++..+-|..+|.++++....... .  ...+.++....+|...+. +..| +..+|..+.+... +...
T Consensus       478 ~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~-~~~~  554 (758)
T 3ott_A          478 IPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQS-ISFG  554 (758)
T ss_dssp             EECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCB-CCCC
T ss_pred             EEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEE-eccc
Confidence            8888888877444445688889887764432211 1  245788888888876654 4444 7778765443211 1111


Q ss_pred             Cc-ccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEE-CCCCCEEEEeeCCCcEEe
Q psy15421        268 NI-ICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV-TEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       268 ~~-~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~-s~d~~~l~s~s~D~~i~i  338 (340)
                      .. ...|.++... +|. |-.++.+| +..++..+.+.. .+.-....++...+ .++|. |.-|+.+|.+++
T Consensus       555 gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~G~-l~fG~~~Gl~~f  622 (758)
T 3ott_A          555 SFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTMDAR-QQNMTNKRFTSLLFDPKEDC-VYLGGADGFGIS  622 (758)
T ss_dssp             C---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTCCEE-EC--CCCCCSEEEEETTTTE-EEEECBSEEEEE
T ss_pred             CCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCceeE-EecCCCCceeeeEEECCCCc-EEEecCCceEEE
Confidence            11 1236666654 554 55556666 667776554332 11111122333333 45775 555666776653

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=85.89  E-value=21  Score=32.73  Aligned_cols=73  Identities=12%  Similarity=0.050  Sum_probs=51.6

Q ss_pred             CCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCC------ee-------eeEecCCCCCeEEEEEecCCCEEEEEeCCCc
Q psy15421        184 TGDVMSLSLAPDMRTFVSG-ACDASAKLWDIRDG------SC-------KQTFPGHESDINAVTFFPNGWAFATGSDDAT  249 (340)
Q Consensus       184 ~~~v~~~~~~~~~~~~~sg-~~dg~i~~wd~~~~------~~-------~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~  249 (340)
                      ....-.+.++|||++++.+ -.+.++.++|++.-      +.       ....+ -.-...-.+|+++|..+.|---|..
T Consensus       322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSq  400 (638)
T 3sbq_A          322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQ  400 (638)
T ss_dssp             SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTE
T ss_pred             CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecce
Confidence            3345578899999988764 46999999998731      11       11222 2334567899999976777778999


Q ss_pred             EEEEeCcC
Q psy15421        250 CRLFDIRA  257 (340)
Q Consensus       250 i~iwd~~~  257 (340)
                      |--|++..
T Consensus       401 vvkWni~~  408 (638)
T 3sbq_A          401 VVKWNMEE  408 (638)
T ss_dssp             EEEEEHHH
T ss_pred             EEEEeccH
Confidence            99999864

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.88  E-value=6.8  Score=38.60  Aligned_cols=38  Identities=37%  Similarity=0.244  Sum_probs=32.9

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEee
Q psy15421         57 KIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP   94 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~   94 (340)
                      .+.+++..++..++++.+.|+++|+||+.+++.+.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            56778888888999999999999999999998876654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	340
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-78
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-39
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-28
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-26
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-28
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-21
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-20
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-19
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-17
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-16
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-15
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-13
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-13
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.001
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-11
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-10
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-09
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	3e-05
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	0.001

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  240 bits (611), Expect = 7e-78
 Identities = 290/340 (85%), Positives = 315/340 (92%)

Query: 1   MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
           M+ELD LRQEAE LKN IRDARKA  D +L   T N++P+GRIQMRTRRTLRGHLAKIYA
Sbjct: 1   MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60

Query: 61  MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
           MHWG+DSR LVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG++VACGGLDNI
Sbjct: 61  MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120

Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
           CSIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQIVTSSGD +CALWDIETGQQ  +F
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180

Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
            GHTGDVMSLSLAPD R FVSGACDASAKLWD+R+G C+QTF GHESDINA+ FFPNG A
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240

Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           FATGSDDATCRLFD+RADQEL  YSHDNIICGITSV+FS+SGRLLLAGYDDFNCNVWD++
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300

Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           K +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  139 bits (350), Expect = 2e-39
 Identities = 66/313 (21%), Positives = 119/313 (38%), Gaps = 27/313 (8%)

Query: 48  RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
           +  L GH + +  + +      +VSAS+D  + VWD  T +    +   +  V   ++  
Sbjct: 10  KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69

Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCA 167
           SG  +A     +      L   +G   +           S     + + IV++S D +  
Sbjct: 70  SGKLLAS---CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 126

Query: 168 LWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHES 227
           +W+++TG    +F GH   V  +    D     S + D + ++W +    CK     H  
Sbjct: 127 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 186

Query: 228 DINAVTF--------------------FPNGWAFATGSDDATCRLFDIRADQELAMYS-H 266
            +  +++                       G    +GS D T +++D+     L     H
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246

Query: 267 DNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMA 326
           DN    +  V F   G+ +L+  DD    VWD         L  H++ V+ L   +    
Sbjct: 247 DN---WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 303

Query: 327 VATGSWDSFLRIW 339
           V TGS D  +++W
Sbjct: 304 VVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (270), Expect = 7e-28
 Identities = 47/232 (20%), Positives = 92/232 (39%), Gaps = 25/232 (10%)

Query: 44  QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTC 103
                RT+ GH   + ++    +  ++VSAS+D  + +W+  T   V        WV   
Sbjct: 90  GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 149

Query: 104 AYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ------- 156
                G+ +A    D    ++ + T+E       EL  H   + C  +  ++        
Sbjct: 150 RPNQDGTLIASCSNDQTVRVWVVATKE----CKAELREHRHVVECISWAPESSYSSISEA 205

Query: 157 --------------IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSG 202
                         +++ S D +  +WD+ TG    + +GH   V  +      +  +S 
Sbjct: 206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC 265

Query: 203 ACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFD 254
           A D + ++WD ++  C +T   HE  + ++ F        TGS D T ++++
Sbjct: 266 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (261), Expect = 1e-26
 Identities = 58/272 (21%), Positives = 110/272 (40%), Gaps = 29/272 (10%)

Query: 49  RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
           RTL+GH   +  + +    + L S S D  + +WD      +  +      V + +  P+
Sbjct: 53  RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 112

Query: 109 GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL-DDNQIVTSSGDMSCA 167
           G  +     D    ++ ++T        +   GH  ++   R   D   I + S D +  
Sbjct: 113 GDHIVSASRDKTIKMWEVQTG----YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 168

Query: 168 LWDIETGQQCASFIGHTGDVMSLSLAPDM--------------------RTFVSGACDAS 207
           +W + T +  A    H   V  +S AP+                        +SG+ D +
Sbjct: 169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228

Query: 208 AKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-H 266
            K+WD+  G C  T  GH++ +  V F   G    + +DD T R++D +  + +   + H
Sbjct: 229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 288

Query: 267 DNIICGITSVAFSRSGRLLLAGYDDFNCNVWD 298
           ++    +TS+ F ++   ++ G  D    VW+
Sbjct: 289 EH---FVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.3 bits (186), Expect = 2e-16
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 23/223 (10%)

Query: 139 LPGHTGYLSCCRFL-DDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR 197
           L GH   ++   F    + +V++S D +  +WD ETG    +  GHT  V  +S     +
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72

Query: 198 TFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRA 257
              S + D + KLWD +   C +T  GH+ ++++V+  PNG    + S D T ++++++ 
Sbjct: 73  LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 132

Query: 258 DQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSC 317
              +  ++          V  ++ G L+ +  +D    VW     E    L  H + V C
Sbjct: 133 GYCVKTFTGHREWV--RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190

Query: 318 LGVTED--------------------GMAVATGSWDSFLRIWN 340
           +    +                    G  + +GS D  +++W+
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 233

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.2 bits (183), Expect = 6e-16
 Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 2/170 (1%)

Query: 171 IETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDIN 230
           I    +  +  GH   V  +   P     VS + DA+ K+WD   G  ++T  GH   + 
Sbjct: 4   IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63

Query: 231 AVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYD 290
            ++F  +G   A+ S D T +L+D +  + +      +      S     +G  +++   
Sbjct: 64  DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS--IMPNGDHIVSASR 121

Query: 291 DFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
           D    +W+           GH   V  +   +DG  +A+ S D  +R+W 
Sbjct: 122 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (279), Expect = 1e-28
 Identities = 67/346 (19%), Positives = 127/346 (36%), Gaps = 46/346 (13%)

Query: 36  NMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAI-- 93
           N      I +   ++L  H + +  + + +D   L +   +    V+     + V  +  
Sbjct: 44  NPALPREIDVELHKSL-DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSD 101

Query: 94  ----------------PLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSR 137
                           P    ++ +  ++P G F+A G  D +  I+     E    V  
Sbjct: 102 DSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW---DIENRKIVMI 158

Query: 138 ELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR 197
                    S   F   +++V+ SGD +  +WD+ TGQ   +     G         D +
Sbjct: 159 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 218

Query: 198 TFVSGACDASAKLWDIRDGSCKQT-------FPGHESDINAVTFFPNGWAFATGSDDATC 250
              +G+ D + ++WD   G   +          GH+  + +V F  +G +  +GS D + 
Sbjct: 219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 278

Query: 251 RLFDIRADQELAMY----------SHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
           +L++++     +            ++      + SVA +++   +L+G  D     WD  
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

Query: 301 KTERAGILAGHDNRVSCLGVTE------DGMAVATGSWDSFLRIWN 340
                 +L GH N V  + V        +    ATGS D   RIW 
Sbjct: 339 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.8 bits (226), Expect = 2e-21
 Identities = 49/220 (22%), Positives = 85/220 (38%), Gaps = 22/220 (10%)

Query: 59  YAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD 118
           Y++ +      LVS S D  + +WD  T      + +             G ++A G LD
Sbjct: 167 YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLD 226

Query: 119 NICSIYSLKTREGNVRVSRE---LPGHTGYLSCCRFL-DDNQIVTSSGDMSCALWDIETG 174
               ++  +T     R+  E     GH   +    F  D   +V+ S D S  LW+++  
Sbjct: 227 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 286

Query: 175 QQ------------CASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTF 222
                           ++IGH   V+S++   +    +SG+ D     WD + G+     
Sbjct: 287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML 346

Query: 223 PGHESDINAV------TFFPNGWAFATGSDDATCRLFDIR 256
            GH + + +V      +  P    FATGS D   R++  +
Sbjct: 347 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 6e-07
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 6/105 (5%)

Query: 29  SLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN 88
           +L  A    +           T  GH   + ++    +   ++S S+D  ++ WD  + N
Sbjct: 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 341

Query: 89  KVHAIPLRSSWVMTCAYA------PSGSFVACGGLDNICSIYSLK 127
            +  +    + V++ A A      P  +  A G  D    I+  K
Sbjct: 342 PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.4 bits (225), Expect = 2e-21
 Identities = 63/341 (18%), Positives = 112/341 (32%), Gaps = 48/341 (14%)

Query: 42  RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVM 101
           R ++++ + L+GH   +           +VS S D  L VW + T   +  +   +  V 
Sbjct: 3   RGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61

Query: 102 TCAYAPSGSFVACGGLDNICSIYS-------LKTREGNVRVSRELPGHTGYLSCCRFLD- 153
           +     +                        L      VR            S    L  
Sbjct: 62  SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRV 121

Query: 154 -------------------------DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVM 188
                                      ++V+ + D    +WD ET     +  GHT  V 
Sbjct: 122 WDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 181

Query: 189 SLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDA 248
           SL    D    VSG+ D S ++WD+  G+C  T  GH+S  + +    N     +G+ D+
Sbjct: 182 SLQ--FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADS 237

Query: 249 TCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD-----SMKTE 303
           T +++DI+  Q L      N      +     +   ++   DD    +WD      ++  
Sbjct: 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTC-LQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 296

Query: 304 RAGILAGHDNRVSCLGVTEDGMAVATGSWD----SFLRIWN 340
                 G    V  +  +   +  A GS +    + L + +
Sbjct: 297 VTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (187), Expect = 2e-16
 Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 10/212 (4%)

Query: 129 REGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVM 188
           R G ++  + L GH  ++  C     N+IV+ S D +  +W   TG+   + +GHTG V 
Sbjct: 2   RRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61

Query: 189 SLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDA 248
           S  +  ++    S               + +     +           +     +GS DA
Sbjct: 62  SSQMRDNIIISGSTDRTL----KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117

Query: 249 TCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGIL 308
           T R++DI   Q L +                  GR +++G  DF   VWD         L
Sbjct: 118 TLRVWDIETGQCLHVLMG----HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 173

Query: 309 AGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
            GH NRV    +  DG+ V +GS D+ +R+W+
Sbjct: 174 QGHTNRVYS--LQFDGIHVVSGSLDTSIRVWD 203

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 7e-06
 Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 9/131 (6%)

Query: 211 WDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELA-MYSHDNI 269
           W   +    +   GH+  +        G    +GSDD T +++     + L  +  H   
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG- 58

Query: 270 ICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVAT 329
             G+ S     +    +      +  +          I   + +  +   +      V +
Sbjct: 59  --GVWSSQMRDN----IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS 112

Query: 330 GSWDSFLRIWN 340
           GS D+ LR+W+
Sbjct: 113 GSRDATLRVWD 123

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.6 bits (215), Expect = 3e-20
 Identities = 41/300 (13%), Positives = 89/300 (29%), Gaps = 13/300 (4%)

Query: 46  RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLR-----SSWV 100
           R   TL  H   + A+   + +R++ +    G + VWD         +         +++
Sbjct: 43  RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYI 100

Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTS 160
            +C   P G  +  GG  +  SI+ L      ++          Y               
Sbjct: 101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC 160

Query: 161 SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQ 220
           S                       G           + +  G    +           + 
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD--NTVRSWDLREGRQL 218

Query: 221 TFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSR 280
                 S I ++ + P G   A G + +   +  +    +  ++ H++ +    S+ F+ 
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL---SLKFAY 275

Query: 281 SGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
            G+  ++   D   N W       +   +   + V    ++ D   + TGS D    ++ 
Sbjct: 276 CGKWFVSTGKDNLLNAWR-TPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 1e-12
 Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 1/115 (0%)

Query: 141 GHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV 200
             T  +    +    + +    + S                 H   V+SL  A   + FV
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV 281

Query: 201 SGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDI 255
           S   D     W    G+         S + +     +     TGS D    ++++
Sbjct: 282 STGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 99  WVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL-DDNQI 157
            V++  +A  G +    G DN+ + +           S      +  +  C    DD  I
Sbjct: 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA-----SIFQSKESSSVLSCDISVDDKYI 321

Query: 158 VTSSGDMSCALWDI 171
           VT SGD    ++++
Sbjct: 322 VTGSGDKKATVYEV 335

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (209), Expect = 1e-19
 Identities = 57/310 (18%), Positives = 98/310 (31%), Gaps = 27/310 (8%)

Query: 41  GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV 100
           GR  ++           +Y + +  D + +VS  +D  + +WD  T      +   +  V
Sbjct: 1   GRHSLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV 58

Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTS 160
           +   Y                   +       +        H          ++  +VT 
Sbjct: 59  LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLI-------HHCEAVLHLRFNNGMMVTC 111

Query: 161 SGDMSCALWDIETGQQ-CASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCK 219
           S D S A+WD+ +        +          +  D +  VS + D + K+W+       
Sbjct: 112 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV 171

Query: 220 QTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS 279
           +T  GH+  I             +GS D T RL+DI     L +      +         
Sbjct: 172 RTLNGHKRGIA--CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK 229

Query: 280 RSGRLLLAGYDDFNCNVWD---------SMKTERAGILAGHDNRVSCLGVTEDGMAVATG 330
           R    +++G  D    VWD            T     L  H  RV  L    D   + + 
Sbjct: 230 R----IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSS 283

Query: 331 SWDSFLRIWN 340
           S D  + IW+
Sbjct: 284 SHDDTILIWD 293

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.3 bits (196), Expect = 2e-17
 Identities = 47/322 (14%), Positives = 88/322 (27%), Gaps = 29/322 (9%)

Query: 44  QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKV--HAIPLRSSWVM 101
           +      L+ H  ++  + W  DS  +V+   D    VW            I   +    
Sbjct: 40  KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99

Query: 102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSS 161
              +AP+    A G    + SI   +                  +    +  ++ ++ + 
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159

Query: 162 GDM-SCALWDIETGQ------------------QCASFIGHTGDVMSLSLAPDMRTFVSG 202
                C ++     +                           G V  +  + +       
Sbjct: 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219

Query: 203 ACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELA 262
           + D++  L D        T       + AVTF       A G D          A  +L+
Sbjct: 220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLS 279

Query: 263 MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTE 322
                ++    +    +   R       D   +   S     AG+ + H N VS + V  
Sbjct: 280 FGGRLDVPKQSSQRGLTARERFQNL---DKKASSEGSAAAG-AGLDSLHKNSVSQISVLS 335

Query: 323 DG----MAVATGSWDSFLRIWN 340
            G        T   D  + IW+
Sbjct: 336 GGKAKCSQFCTTGMDGGMSIWD 357

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.5 bits (155), Expect = 4e-12
 Identities = 40/311 (12%), Positives = 83/311 (26%), Gaps = 28/311 (9%)

Query: 54  HLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLR--SSWVMTCAYAPSGSF 111
            +  I    W  D   +     + ++ +++      V    L+  +  V    +AP  + 
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 112 VACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDI 171
           +   G D    +++             L  +          ++ +    SG    ++   
Sbjct: 66  IVTCGTDRNAYVWT-LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 172 ETGQQ----CASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS---------- 217
           E                  V+SL   P+     +G+CD   +++                
Sbjct: 125 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184

Query: 218 --------CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNI 269
                              ++ V F  NG   A  S D+T  L D      +A  + +  
Sbjct: 185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET- 243

Query: 270 ICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVAT 329
              + +V F     L+ AG+D     ++            G  +                
Sbjct: 244 -LPLLAVTFITESSLVAAGHDC-FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF 301

Query: 330 GSWDSFLRIWN 340
            + D       
Sbjct: 302 QNLDKKASSEG 312

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.5 bits (142), Expect = 1e-10
 Identities = 30/222 (13%), Positives = 63/222 (28%), Gaps = 19/222 (8%)

Query: 58  IYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGG- 116
           + ++ W  +S  L + S D K  ++ +Y                           +  G 
Sbjct: 144 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW 203

Query: 117 -----LDNICSIYSLKTREGNVRV--------SRELPGHTGYLSCCRFLDDNQIVTSSGD 163
                     S  +  + +  V +           L   T  L    F+ ++ +V +  D
Sbjct: 204 VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHD 263

Query: 164 MSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP 223
               L+  ++     SF G        S             D  A        +      
Sbjct: 264 CFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG-SAAAGAGLDS 322

Query: 224 GHESDINAVTFFPNG----WAFATGSDDATCRLFDIRADQEL 261
            H++ ++ ++    G      F T   D    ++D+R+ +  
Sbjct: 323 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 18/175 (10%), Positives = 46/175 (26%), Gaps = 43/175 (24%)

Query: 44  QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTC 103
                         ++ + + ++   +   S D  + + D+     V  +   +  ++  
Sbjct: 190 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV 249

Query: 104 AYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELP----------------------- 140
            +    S VA G       +++  +  G +     L                        
Sbjct: 250 TFITESSLVAAGHDCFPV-LFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 308

Query: 141 --------------GHTGYLSCCRFLDD-----NQIVTSSGDMSCALWDIETGQQ 176
                          H   +S    L       +Q  T+  D   ++WD+ + + 
Sbjct: 309 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 76.8 bits (187), Expect = 3e-16
 Identities = 29/308 (9%), Positives = 66/308 (21%), Gaps = 25/308 (8%)

Query: 53  GHLAKIYAMHWGSDSRNLVSASQD-GKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSF 111
               +I  +  G D++         G  +    Y T K          V       +G F
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99

Query: 112 VACGGLDNICSIYSLK-------TREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDM 164
                         L+        R     ++              F   +         
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159

Query: 165 SCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCK----- 219
           +  ++D+E  +   +         + +   D +     +  +     D    +       
Sbjct: 160 AIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVS 218

Query: 220 --QTFPGHESDINAVTFFPNGWAFATGSDDAT-----CRLFDIRADQELAMYSHDNIICG 272
                P      N     P       G  D           ++       +   ++ I  
Sbjct: 219 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILI 278

Query: 273 ITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSW 332
            +               +      +D         +    N ++ L ++ D   V     
Sbjct: 279 YSVPVHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKD 334

Query: 333 DSFLRIWN 340
           D  +  + 
Sbjct: 335 DGKIYTFP 342

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 73.0 bits (177), Expect = 5e-15
 Identities = 28/190 (14%), Positives = 53/190 (27%), Gaps = 15/190 (7%)

Query: 43  IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYT-------TNKVHAIPL 95
           ++ R         +  YA  + +DS+NL   S        D           +K   IPL
Sbjct: 166 MEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL 225

Query: 96  RSSWVMTCAYAPSGSFVACGGL---DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL 152
                      P       G     D       +    G+ R+   L       S     
Sbjct: 226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 285

Query: 153 DDNQ-IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLW 211
           +       +        +D++T +          ++  L L+ D +T +    D     +
Sbjct: 286 EFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTF 341

Query: 212 DIRDGSCKQT 221
            +     ++T
Sbjct: 342 PLEKPEDERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 65.3 bits (157), Expect = 2e-12
 Identities = 13/225 (5%), Positives = 46/225 (20%), Gaps = 16/225 (7%)

Query: 49  RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
                     +  +                + V+D        A    +S     A+   
Sbjct: 131 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-ENSHDYAPAFDAD 189

Query: 109 GSFVACGGLDNICSIYSLKTREGNVRVSRE---LPGHTGYLSCCRFLDDNQIVTSSGDMS 165
              +      ++           +  V  +   +P   G  +  + +  +    +     
Sbjct: 190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 249

Query: 166 CALW--------DIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS 217
             ++        D    +                       +           +D++   
Sbjct: 250 NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK 309

Query: 218 CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELA 262
                   ++++  +    +        DD     F +   ++  
Sbjct: 310 VT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 64.1 bits (154), Expect = 4e-12
 Identities = 27/274 (9%), Positives = 66/274 (24%), Gaps = 26/274 (9%)

Query: 46  RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAY 105
                   +L  ++AM    + +  V A+   +++  D  T         R + +     
Sbjct: 76  GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 135

Query: 106 APSGSFVACGGLDNICSIYSLKTREG------NVRVSRELPGHTGYLSCCRFLDDNQIVT 159
           + +  F+A G             +          ++      ++   +     D   +  
Sbjct: 136 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY 195

Query: 160 SSGDMSCALWDIETGQQCA-------SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLW- 211
            S        D                     G      L P   T  +G  D +     
Sbjct: 196 LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKR 255

Query: 212 ------DIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS 265
                 D  D              +          +    +      +D++  +   + +
Sbjct: 256 SSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN 315

Query: 266 HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 299
           +      +T +  S   + ++   DD     +  
Sbjct: 316 N------LTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.6 bits (171), Expect = 3e-14
 Identities = 30/323 (9%), Positives = 74/323 (22%), Gaps = 30/323 (9%)

Query: 45  MRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLR---SSWVM 101
           M+  +  +     I  +        L+  S DG L V+      K   +         ++
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 102 TCAYAP-SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTS 160
            C +   +   +  G +        L        ++           C    D     + 
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120

Query: 161 SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC------DASAKLWDIR 214
            G +     D          + +     +           + +       ++  + + + 
Sbjct: 121 DGLIEV--IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178

Query: 215 DGSCKQT----FPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELA-------- 262
                              +          +A  S D    +       +          
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238

Query: 263 -----MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSC 317
                     N+   + S+ FS   + L     D   + W+    ++    A   N  S 
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSV 297

Query: 318 LGVTEDGMAVATGSWDSFLRIWN 340
           + +      +   + D   +   
Sbjct: 298 VKIACSDNILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 5e-08
 Identities = 22/210 (10%), Positives = 51/210 (24%), Gaps = 24/210 (11%)

Query: 82  WDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPG 141
            D     K                  + S +  G  ++    + L   E +     E   
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192

Query: 142 HTGYLSCCRFLDDNQ-IVTSSGDMSCALWDIETG---------------QQCASFIGHTG 185
                       + +    SS D   A+   +                 +          
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252

Query: 186 DVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGS 245
            V S+  +P  +   +   D     W+++     + F       + V    +       +
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILCLAT 311

Query: 246 DDATCRL-------FDIRADQELAMYSHDN 268
            D T +         ++ A     ++ ++N
Sbjct: 312 SDDTFKTNAAIDQTIELNASSIYIIFDYEN 341

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 1/76 (1%)

Query: 44  QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTC 103
             R           + ++ +    + L +A  DG +  W+  T  K+     + +     
Sbjct: 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-KFNEDSVV 298

Query: 104 AYAPSGSFVACGGLDN 119
             A S + +     D+
Sbjct: 299 KIACSDNILCLATSDD 314

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 67.3 bits (162), Expect = 2e-13
 Identities = 39/296 (13%), Positives = 80/296 (27%), Gaps = 7/296 (2%)

Query: 48  RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP-LRSSWVMTCAYA 106
            +   GH   I A+   +D + L SA  +G +  WD  T       P + ++ +      
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 107 PSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSC 166
             G        D++  + +  +   + +        +          D  I  ++     
Sbjct: 65  SKGDLFTVSWDDHLKVVPAGGSGVDSSK--AVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE 226
           A++      +    I +    ++LS                         S  +T     
Sbjct: 123 AIYSHGKLTEV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180

Query: 227 SDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLL 286
              +        +  AT               +     S       +  V++S     L 
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240

Query: 287 AGYDDFNCNVWD--SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
            G  D +  VW+          I   H        +  +   + +   DS ++ WN
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (113), Expect = 4e-07
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 1/86 (1%)

Query: 216 GSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITS 275
           GS  Q   GH   I A++   +G    +   +     +DI       ++   +    IT 
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH-ATMITG 60

Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMK 301
           +  +  G L    +DD    V     
Sbjct: 61  IKTTSKGDLFTVSWDDHLKVVPAGGS 86

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.8 bits (101), Expect = 1e-05
 Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 2/116 (1%)

Query: 142 HTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVS 201
            T                S   +  ++ +        S+  HT  V  +S +PD     +
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241

Query: 202 GACDASAKLWDIRDGSCKQ--TFPGHESDINAVTFFPNGWAFATGSDDATCRLFDI 255
           G+ D S  +W++   S         H         + N     +   D+  + +++
Sbjct: 242 GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.5 bits (95), Expect = 7e-05
 Identities = 12/90 (13%), Positives = 39/90 (43%), Gaps = 1/90 (1%)

Query: 82  WDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPG 141
            +++     ++    ++ V   +++P    +A G LDN   ++++        +  +   
Sbjct: 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD-HPIIIKGAH 267

Query: 142 HTGYLSCCRFLDDNQIVTSSGDMSCALWDI 171
               ++   +L++  IV++  D +   W++
Sbjct: 268 AMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.4 bits (160), Expect = 6e-13
 Identities = 33/310 (10%), Positives = 65/310 (20%), Gaps = 45/310 (14%)

Query: 70  LVSASQDGKLIVWDSYTTNKVHAIPLRS--SWVMTCAYAPSGSFV-ACGGLDNICSIYSL 126
           +++ ++  KL+V D+        I +       M    AP G    A            L
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 127 KTRE-------------GNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIET 173
            T E                     L      L+        ++       +        
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123

Query: 174 GQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESD----- 228
                        +  L+ A D         D    + D   G+  +  P    +     
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDL--HVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 229 ------------------INAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNII 270
                                 T   +       +        D+   +          +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 271 CGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATG 330
              ++       R             +D  K      +    +    + V+ DG  V  G
Sbjct: 242 FYFSTAVNPAKTRA---FGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLG 297

Query: 331 SWDSFLRIWN 340
                L  ++
Sbjct: 298 GALGDLAAYD 307

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 17/165 (10%), Positives = 42/165 (25%), Gaps = 2/165 (1%)

Query: 98  SWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQI 157
              +      +G+ V    + +  +    +     V    E  G           D +  
Sbjct: 153 GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA 212

Query: 158 VTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS 217
             ++        D+ETG+     +         +     +T          + +D+   +
Sbjct: 213 DPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA-FGAYNVLESFDLEKNA 271

Query: 218 CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELA 262
             +  P       +V    +G     G        +D    ++  
Sbjct: 272 SIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 31/296 (10%), Positives = 64/296 (21%), Gaps = 43/296 (14%)

Query: 50  TLRGHLAKIYAMHWGSDSRNL-VSASQDGKLIVWDSYT-----TNKVHAIPLRSSWVMTC 103
           T+                R    + ++   L+  D  T        +     R   +   
Sbjct: 28  TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA 87

Query: 104 AYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPG-------HTGYLSCCRFLDDNQ 156
           A +P G  +A         +   + +   V +                 ++   +  D  
Sbjct: 88  ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS 147

Query: 157 IVTSSGDMSCALWDIETGQQCASFIGH-----------------------TGDVMSLSLA 193
            +   G     + D E G                                       +  
Sbjct: 148 KLYGLG-RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTAR 206

Query: 194 PDMRTFVSGACDASAKLWDIRDGSCKQT-FPGHESDINAVTFFPNGWAFATGSDDATCRL 252
            D+      A        D+  G          +    +    P                
Sbjct: 207 KDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AYNVLES 264

Query: 253 FDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGIL 308
           FD+  +  +      +      SV  S  G  +  G    +   +D+   E+ G +
Sbjct: 265 FDLEKNASIKRVPLPH---SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 16/181 (8%), Positives = 38/181 (20%), Gaps = 5/181 (2%)

Query: 53  GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFV 112
           G    +     G+   +    S + +                                  
Sbjct: 153 GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA 212

Query: 113 ACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIE 172
                        L+T E      RE+     +               + ++    +D+E
Sbjct: 213 DPTAYRTGLLTMDLETGE---MAMREVRIMDVFYFSTAVNPAKTRAFGAYNV-LESFDLE 268

Query: 173 TGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAV 232
                   +       S++++ D  T   G        +D      K       +   ++
Sbjct: 269 KNASIKR-VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327

Query: 233 T 233
            
Sbjct: 328 A 328

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.8 bits (158), Expect = 7e-13
 Identities = 34/293 (11%), Positives = 83/293 (28%), Gaps = 15/293 (5%)

Query: 49  RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
           +T+ GH   I A+        L+S S DG+++ W S + ++ H     S+ +++   + +
Sbjct: 7   KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDH-----SNLIVSLDNSKA 57

Query: 109 GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCAL 168
             + +    D +      K   G+                      +  +      +  +
Sbjct: 58  QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTN----DDDLLILQSFTGDI 113

Query: 169 WDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESD 228
                     S +  + + +++ L       V    D             K ++      
Sbjct: 114 IKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS 173

Query: 229 INAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAG 288
              +               +        A +   + +         +        L+  G
Sbjct: 174 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 233

Query: 289 YDDFNCNVWD-SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
             D N  ++      +    L  H + V+ L        + +   D+ ++ WN
Sbjct: 234 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.6 bits (116), Expect = 2e-07
 Identities = 6/109 (5%), Positives = 30/109 (27%), Gaps = 2/109 (1%)

Query: 148 CCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDAS 207
               +    +                  +  +      +  +     +     +G+ D +
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238

Query: 208 AKLWDIRD-GSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDI 255
             ++ ++      +    H+  +N + +        +   DA  + +++
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 4e-06
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 82  WDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPG 141
             ++ T+K++AI  + +             VA G LD    IYS+K     ++    L  
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA---LNA 256

Query: 142 HTGYLSCCRFLDDNQIVTSSGDMSCALWDI 171
           H   ++   +   + +V+S  D     W++
Sbjct: 257 HKDGVNNLLWETPSTLVSSGADACIKRWNV 286

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.1 bits (159), Expect = 1e-12
 Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 1/134 (0%)

Query: 139 LPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRT 198
           L GH   +  C   +DN ++T + D    ++D    +      GH G V +L  A     
Sbjct: 8   LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 67

Query: 199 FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF-ATGSDDATCRLFDIRA 257
                          +          + +             +  TGS D T  ++ +  
Sbjct: 68  VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 127

Query: 258 DQELAMYSHDNIIC 271
           +  +  +  ++   
Sbjct: 128 ESSVPDHGEEHDYP 141

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.7 bits (158), Expect = 1e-12
 Identities = 47/351 (13%), Positives = 97/351 (27%), Gaps = 64/351 (18%)

Query: 48  RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
           R TLRGH+  +       +   +++ + D  + V+DS     +  +      V    YA 
Sbjct: 5   RTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCA 167
            G  V+      +      K    +V                 + +   IVT S D +  
Sbjct: 64  GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD--IVEYKNIKYIVTGSRDNTLH 121

Query: 168 LWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVS---------------------GACDA 206
           +W +                +      +   FV                      G+ D 
Sbjct: 122 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 181

Query: 207 SAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSH 266
           +  +WD+    C     GH   I +  +        + S D T R++D+   + +     
Sbjct: 182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 241

Query: 267 DNIICG-------------------------------------ITSVAFSRSGRLLLAGY 289
              + G                                          F  S  +L++G 
Sbjct: 242 HTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS 301

Query: 290 DDFNCNVWDSMKTER-AGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 339
           ++   N+++    +     +    +++  +      + VA    D    + 
Sbjct: 302 EN-QFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL-VAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 15/131 (11%), Positives = 33/131 (25%), Gaps = 3/131 (2%)

Query: 42  RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVM 101
           RI       L   L    A+       +    S      +      +         + + 
Sbjct: 226 RIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLS 285

Query: 102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSS 161
                     +   G +N  +IY+L++ +    V   +      +    F     +    
Sbjct: 286 AITTFYVSDNILVSGSENQFNIYNLRSGK---LVHANILKDADQIWSVNFKGKTLVAAVE 342

Query: 162 GDMSCALWDIE 172
            D    L  ++
Sbjct: 343 KDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 14/64 (21%), Positives = 24/64 (37%)

Query: 277 AFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFL 336
                   ++ G DD    V+DS+  +    L+GHD  V  L     G+ V+  +  +  
Sbjct: 18  CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR 77

Query: 337 RIWN 340
               
Sbjct: 78  VWDI 81

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.7 bits (153), Expect = 6e-12
 Identities = 50/355 (14%), Positives = 103/355 (29%), Gaps = 70/355 (19%)

Query: 47  TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLR---------- 96
           T    + H A I+++     +   VS S DG L VWD+   +  +               
Sbjct: 6   TANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63

Query: 97  ---SSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVR--------VSRELPGHTGY 145
                       A     VA          Y +   +   +        +  ++  H+ +
Sbjct: 64  HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 146 LSCCRFLDD----NQIVTSSGDMSCALWDIETGQQC------------------ASFIGH 183
                  +D    +++V +    +  +W                           S +  
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 183

Query: 184 TGDVMSLSLAPDMRTFVSGACDASAKL------WDIRDGSCKQTFPGHESDINAVTFFPN 237
           +    S+ ++       +G  + + ++        + +   + +   + + I +V F P 
Sbjct: 184 SQFATSVDISER-GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242

Query: 238 GWAFATGSDD---ATCRLFDIRADQELAMYSHDNIIC-----------GITSVAFSRSGR 283
           G   A   D        L++    + +   S                  + S++F+ SG 
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302

Query: 284 LLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSC----LGVTEDGMAVATGSWDS 334
            L +   D     WD    ER   L  H + +      L V E G ++A      
Sbjct: 303 TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.3 bits (144), Expect = 9e-11
 Identities = 25/214 (11%), Positives = 57/214 (26%), Gaps = 28/214 (13%)

Query: 141 GHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETG------QQCASFIGHTGDVMSLSL-- 192
            H   +       ++  V+ SGD    +WD +         +  S   H   +  + +  
Sbjct: 12  AHDADIFSVSA-CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70

Query: 193 -----APDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG-WAFATGSD 246
                A ++    + +       + I      +     + D+       +  WA   G+ 
Sbjct: 71  AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130

Query: 247 DATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAG 306
           +      D      L                F+     L   +                 
Sbjct: 131 N------DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM--- 181

Query: 307 ILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
                    + + ++E G+ +ATG  +  ++I  
Sbjct: 182 ---TPSQFATSVDISERGL-IATGFNNGTVQISE 211

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 3e-09
 Identities = 42/269 (15%), Positives = 68/269 (25%), Gaps = 47/269 (17%)

Query: 57  KIYAMHWGSDSRNLVSASQDGKLIVWDSYTT------------------NKVHAIPLRSS 98
           K  A +    S  LV+    G   +W  +                      V +    S 
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 185

Query: 99  WVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGY---LSCCRFLDDN 155
           +  +   +  G  +A G  +    I  L T         +           S       +
Sbjct: 186 FATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244

Query: 156 QIVTSSGDMSCALWDI----------------ETGQQCASFIGHTGDVMSLSLAPDMRTF 199
            +  +    S     +                 + Q       H+  VMSLS      T 
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304

Query: 200 VSGACDASAKLWDIRDGSCKQTFPGHESDI----NAVTFFPNGWAFATGSDDATCRLFDI 255
            S   D   + WD++      T   H  DI    + +    +G + A         L   
Sbjct: 305 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 364

Query: 256 RADQELAMYSHDNIICGITSVAFSRSGRL 284
                  M +  N    +  V   RS R 
Sbjct: 365 ---WRSGMGADLNE--SLCCVCLDRSIRW 388

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 10/135 (7%), Positives = 41/135 (30%), Gaps = 13/135 (9%)

Query: 217 SCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIR-------ADQELAMYSHDNI 269
           +       H++DI +V+   +     + S D   +++D +        D+  + + H + 
Sbjct: 5   ATANAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62

Query: 270 ICGITSV----AFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGM 325
           +  +  +      +    L+       +   +   + +    +      +    + +   
Sbjct: 63  LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122

Query: 326 AVATGSWDSFLRIWN 340
                   +   + +
Sbjct: 123 WALKWGASNDRLLSH 137

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 61.0 bits (146), Expect = 5e-11
 Identities = 23/240 (9%), Positives = 58/240 (24%), Gaps = 28/240 (11%)

Query: 26  CDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSY 85
             T L         +G + +  +   R          + +         +DG L      
Sbjct: 117 GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFG 176

Query: 86  TTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICS----IYSLKTREGNVRVSRELPG 141
           T                       ++    G     +    I+ +    G+ +    +  
Sbjct: 177 TEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEA 236

Query: 142 HT---------------------GYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
            T                                ++    +      + D +TG++ A  
Sbjct: 237 LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK- 295

Query: 181 IGHTGDVMSLSLAPDMRT--FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
                ++ S++++ D +   +     D +  + D   G   ++          +T    G
Sbjct: 296 FEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 30/316 (9%), Positives = 69/316 (21%), Gaps = 50/316 (15%)

Query: 69  NLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVA----------CGGLD 118
           +    +   +  V D      +  I     ++     A  GSF+A           G   
Sbjct: 20  DPAHFAAVTQQFVIDGEAGRVIGMID--GGFLPNPVVADDGSFIAHASTVFSRIARGERT 77

Query: 119 NICSIYSLKTREGNVRVSRELP------GHTGYLSCCRFLDDNQIVTSSGDMSCALWDIE 172
           +   ++   T      +            +    S             S   +  + D+E
Sbjct: 78  DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE 137

Query: 173 TGQQCA-------SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGH 225
                          I  T          D                       +   P  
Sbjct: 138 GKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT----HTEVFHPED 193

Query: 226 ESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLL 285
           E  IN   +          +        D+ +     + + + +     +  +   G   
Sbjct: 194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ 253

Query: 286 LAGYDDFNCNVWDSMKTERAGILAG-------------------HDNRVSCLGVTEDG-- 324
           +A +   +       + +                            + +  + V++D   
Sbjct: 254 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKP 313

Query: 325 MAVATGSWDSFLRIWN 340
           +  A  + D  L I +
Sbjct: 314 LLYALSTGDKTLYIHD 329

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.6 bits (127), Expect = 1e-08
 Identities = 30/295 (10%), Positives = 62/295 (21%), Gaps = 38/295 (12%)

Query: 64  GSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMT-------CAYAPSGSFVACGG 116
            +    +    +   + V+D  T      I L  +            +  P G  +    
Sbjct: 65  STVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ 124

Query: 117 LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQ 176
                ++  +       +   ++P              +       D S A     T   
Sbjct: 125 FSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT----APDTFFMHCRDGSLAKVAFGTEGT 180

Query: 177 CASFIGHTGD------VMSLSLAPDMRTFVSGACDASAKLWDIRDGSCK--QTFPGHESD 228
                           +   + +      V           D+  G  K           
Sbjct: 181 PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA 240

Query: 229 INAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIIC----------------- 271
             A  + P GW               +    E    +    +                  
Sbjct: 241 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH 300

Query: 272 GITSVAFSRSGRLLL--AGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDG 324
            I S+  S+  + LL      D    + D+   E    +    +    +   + G
Sbjct: 301 EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 60.3 bits (144), Expect = 6e-11
 Identities = 44/302 (14%), Positives = 99/302 (32%), Gaps = 16/302 (5%)

Query: 49  RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
           RT RG       +        +   +    +      +          S        +PS
Sbjct: 14  RTARGT---AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS 69

Query: 109 GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCAL 168
           G + A G +    ++    T +    +   +P  +G +    +  +++ + + G+     
Sbjct: 70  GYYCASGDVHG--NVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 127

Query: 169 WDIETGQQCASFIGHTGDVMSLS----LAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG 224
             +       S    TG   +++            +SG+ D +  +++      K TF  
Sbjct: 128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 187

Query: 225 HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELA-----MYSHDNIICGITSVAFS 279
           H   +++V + P+G  FA+   D T  L++     +          +      +  + +S
Sbjct: 188 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 247

Query: 280 RSGRLLLAGYDDFNCNVWD-SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI 338
             G  + +   D    +W+ +       I  G       LG+     A+ + S + F+  
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307

Query: 339 WN 340
            N
Sbjct: 308 VN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.6 bits (124), Expect = 2e-08
 Identities = 27/220 (12%), Positives = 64/220 (29%), Gaps = 8/220 (3%)

Query: 44  QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTC 103
               + T+      +  + W S+S+ + +  +  +                L        
Sbjct: 91  THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN 150

Query: 104 AYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGD 163
           +     S        +  +  ++         S          S     D +   ++ GD
Sbjct: 151 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 210

Query: 164 MSCALWDIETGQQCAS-------FIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG 216
            +  L++   G +           + H+G V  L+ +PD     S + D + K+W++   
Sbjct: 211 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 270

Query: 217 SCKQTFPGHESDINAVT-FFPNGWAFATGSDDATCRLFDI 255
             ++T P      +          A  + S +      + 
Sbjct: 271 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 13/104 (12%), Positives = 26/104 (25%), Gaps = 3/104 (2%)

Query: 139 LPGHT-GYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR 197
           LP    G             +      S     + +      +  H+        +P   
Sbjct: 12  LPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY 71

Query: 198 TFVSGACDASAKLWDIRDG--SCKQTFPGHESDINAVTFFPNGW 239
              SG    + ++WD        K T P     +  +++     
Sbjct: 72  YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK 115

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.7 bits (88), Expect = 7e-04
 Identities = 16/116 (13%), Positives = 35/116 (30%), Gaps = 6/116 (5%)

Query: 59  YAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD 118
               + S   +      +G          +        S  V    ++P G+ +A    D
Sbjct: 200 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 259

Query: 119 NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL--DDNQIVTSSGDMSCALWDIE 172
               I+++ T     +V + +P  T        +      +V+ S +      + E
Sbjct: 260 KTIKIWNVATL----KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 59.8 bits (144), Expect = 1e-10
 Identities = 30/299 (10%), Positives = 81/299 (27%), Gaps = 26/299 (8%)

Query: 63  WGSDSRNL--VSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
              D  NL  V+    G++ + D  T      +    +  ++   + SG ++   G D  
Sbjct: 26  NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHIS-RLSASGRYLFVIGRDGK 84

Query: 121 CSIYSLKTREGNVRVS-RELPGHTGYLSCCRFLDDNQ--IVTSSGDMSCALWDIETGQQC 177
            ++  L  +E       +         +      +++  I  +       + D ET +  
Sbjct: 85  VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144

Query: 178 -----------ASFIGHTGDVMSLSLAPDMRTFVSGACDA-SAKLWDIRDGSC-KQTFPG 224
                               V ++  +     F+    +     L D  D +  K T   
Sbjct: 145 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS 204

Query: 225 HESDINAVTFFPNG-WAFATGSDDATCRLFDIRADQELAMYSHDNIIC---GITSVAFSR 280
            E  ++      +  +     +      + D +  + +A+              +     
Sbjct: 205 AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT 264

Query: 281 SGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 339
            G +    +   +         E       +  ++        G ++   +  +   ++
Sbjct: 265 FGPVWATSHMGDDSVALIGTDPE---GHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 320

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.6 bits (120), Expect = 1e-07
 Identities = 41/338 (12%), Positives = 71/338 (21%), Gaps = 60/338 (17%)

Query: 59  YAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLR-----SSWVMTCAYAPSGSFV- 112
           +     +  R L    +DGK+ + D +         ++      S   +        +  
Sbjct: 65  HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI 124

Query: 113 ACGGLDNICSIYSLKTRE-------GNVRVSRELPGHTGYLSCCRFLDDNQ--IVTSSGD 163
           A         I   +T E         +    +       ++           IV     
Sbjct: 125 AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 184

Query: 164 MSCALWDIETGQQCASFIGHTGDVMS-LSLAPDMRTFVSGACDASAKLWDIRDGSCKQTF 222
               L D        +        +    L    R F++ A   +  +            
Sbjct: 185 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI 244

Query: 223 PGHESDINAVTFFPNGWAFATGSDDATCRLFDI-------------------------RA 257
                         N      G   AT  + D                            
Sbjct: 245 EDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG 304

Query: 258 DQELAMYSHDNIICGITSVAFSRS-----------GRLLLAGYDDFNCNVWDSMKTERAG 306
              L + +H N          +              + +     D           E AG
Sbjct: 305 GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPI--AEWAG 362

Query: 307 ILAGHDNRVSCLGVTEDGMAVATGSW-----DSFLRIW 339
           I  G   RV      +DG  V    W     +S L + 
Sbjct: 363 ITEGQP-RVVQGEFNKDGTEVWFSVWNGKDQESALVVV 399

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.4 bits (91), Expect = 4e-04
 Identities = 18/125 (14%), Positives = 31/125 (24%), Gaps = 11/125 (8%)

Query: 223 PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSG 282
           P          +        T  D     L D    +   +         +     S SG
Sbjct: 17  PEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASG 73

Query: 283 RLLLAGYDDFNCNVWDSMKTERAGILA------GHDNRVSCLGVTEDG-MAVATGSWDSF 335
           R L     D   N+ D +  +    +A         +  +      +   A+A   W   
Sbjct: 74  RYLFVIGRDGKVNMID-LWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQ 132

Query: 336 LRIWN 340
             I +
Sbjct: 133 YVIMD 137

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 56.7 bits (135), Expect = 1e-09
 Identities = 35/322 (10%), Positives = 74/322 (22%), Gaps = 50/322 (15%)

Query: 63  WGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPL-RSSWVMTCAYAPSGSFV-ACGGLDNI 120
             +    ++  +    L V D  +     +  +       T   AP              
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 121 CSIYSLKTRE--GNVRVSRELPGHTGYLSCCRFLDDNQIV-------------TSSGDMS 165
                L T +   +  +S         +       D + V                    
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 166 CALWDIETGQQCASFIGHTGD--VMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP 223
             ++    G +            V  +  A D   +V+G         D++ G      P
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDI---YKMDVKTGKYTVALP 180

Query: 224 GHESD-------------------------INAVTFFPNGWAFATGSDDATCRLFDIRAD 258
               +                              F  +    AT          D++  
Sbjct: 181 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG 240

Query: 259 QELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCL 318
           +       D      T +   +    +    +      +D +K  +    A  D+   C+
Sbjct: 241 KTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR--LAKYD-LKQRKLIKAANLDHTYYCV 297

Query: 319 GVTEDGMAVATGSWDSFLRIWN 340
              + G  +  G   + L ++N
Sbjct: 298 AFDKKGDKLYLGGTFNDLAVFN 319

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 53.2 bits (126), Expect = 1e-08
 Identities = 23/209 (11%), Positives = 48/209 (22%), Gaps = 14/209 (6%)

Query: 54  HLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVA 113
             AK            L+ A+ DG L V       K+     + +  +         + A
Sbjct: 133 LEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIY-KMDVKTGKYTVALPLRNWNRKGYSA 191

Query: 114 CGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIET 173
              L                 ++R                     T+         D++T
Sbjct: 192 PDVLYFWPHQSPRHEFSMLYTIARFKDDKQ------------DPATADLLYGYLSVDLKT 239

Query: 174 GQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVT 233
           G+          ++    L                  +D++     +     +     V 
Sbjct: 240 GKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVA 298

Query: 234 FFPNGWAFATGSDDATCRLFDIRADQELA 262
           F   G     G       +F+    +++ 
Sbjct: 299 FDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 9e-04
 Identities = 8/116 (6%), Positives = 22/116 (18%), Gaps = 8/116 (6%)

Query: 232 VTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLL-AGYD 290
                        +      + D+ +D         +   G  +   +   R        
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF-GPGTAMMAPDNRTAYVLNNH 60

Query: 291 DFNCNVWDSMKTERAGIL------AGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
             +    D    +                 +    ++ DG  V      +     +
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.4 bits (132), Expect = 3e-09
 Identities = 24/276 (8%), Positives = 54/276 (19%), Gaps = 46/276 (16%)

Query: 58  IYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTC-------AYAPSGS 110
                            +   + V+D  T   +  I L  +   +            S +
Sbjct: 79  FALASTSFA--RSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136

Query: 111 FVA-CGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALW 169
            +       +  +  S+          +     + +               S   S A  
Sbjct: 137 CLLFFLFGSSAAAGLSVPGAS----DDQLTKSASCFHI--HPGAAATHYLGSCPASLAAS 190

Query: 170 DIETGQQCAS------FIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP 223
           D+      A                +           + A             + K    
Sbjct: 191 DLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAID 250

Query: 224 GHESDINAVTFFPNGWAFATGSDDA-------------------TCRLFDIRADQELAMY 264
           G+ES   A  F   G+       +                              Q     
Sbjct: 251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI 310

Query: 265 SHDNIICGITSVAFSRSGRLLL--AGYDDFNCNVWD 298
           S+ +      ++  ++ G              +++D
Sbjct: 311 SNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYD 343

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.4 bits (106), Expect = 6e-06
 Identities = 17/215 (7%), Positives = 41/215 (19%), Gaps = 21/215 (9%)

Query: 140 PGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVM-------SLSL 192
            GH+G           +           ++D  T    A                  +  
Sbjct: 72  AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN 131

Query: 193 APDMRT-FVSGACDASAKLWDIRDGSCKQTFPGHES-------DINAVTFFPNGWAFATG 244
                         ++A    +   S  Q                            A+ 
Sbjct: 132 CASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASD 191

Query: 245 SDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTER 304
              A      + A       + +       +   +  G L+ A           +     
Sbjct: 192 LAAAPAAAGIVGAQ---CTGAQNCS---SQAAQANYPGMLVWAVASSILQGDIPAAGATM 245

Query: 305 AGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 339
              + G+++          G  +     ++   + 
Sbjct: 246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 15/234 (6%), Positives = 48/234 (20%), Gaps = 26/234 (11%)

Query: 27  DTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYT 86
              L+           + +      +   +          +      S    L   D   
Sbjct: 135 SACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAA 194

Query: 87  TNKVHAIPL------RSSWVMTCAYAPSGS---------FVACGGLDNICSIYSLKTREG 131
                 I        ++           G                        ++   E 
Sbjct: 195 APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNES 254

Query: 132 NVRVSRELPGHTGYLSCCR-------FLDDNQIVTSSGDMSCALWDIETGQQCASFIGHT 184
             +           ++  +          ++     +   + +      GQ     I + 
Sbjct: 255 GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP-ISNG 313

Query: 185 GDVMSLSLAPDMRT--FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFP 236
            D  ++  A D  +  + + A      ++D      + +    +    +++   
Sbjct: 314 HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP-ESLSVQN 366

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 2e-08
 Identities = 36/269 (13%), Positives = 75/269 (27%), Gaps = 19/269 (7%)

Query: 49  RTLRGHLAKIY---AMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAI--------PLRS 97
               GH + +           S+ L S  + GK+IVW      + +++         + +
Sbjct: 56  VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA 115

Query: 98  SWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQI 157
             +   ++   G  +   G         +    GN                 +     + 
Sbjct: 116 GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRS 175

Query: 158 VTSSGDMSCA---LWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLW--- 211
           +T   D S         +      +       V  +  +PD   FV              
Sbjct: 176 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 235

Query: 212 -DIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNII 270
                    +              + +   FAT   DAT R++D+   + +  ++ D   
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295

Query: 271 CGITSVAFSRSG-RLLLAGYDDFNCNVWD 298
            G   V    +G   +++   D   N ++
Sbjct: 296 LGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 2e-08
 Identities = 25/224 (11%), Positives = 62/224 (27%), Gaps = 10/224 (4%)

Query: 42  RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQ--DGKLIVWDSYTTNKVHAIPLRSSW 99
            +++  +   +     I  + W  + R L    +  D   +     + N +  +   S  
Sbjct: 102 SVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQR 161

Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVT 159
           +  C    S    +    D+   ++            R       ++    F  D+    
Sbjct: 162 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFV 221

Query: 160 SSGDMSCALWD-----IETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIR 214
            +      +        E  +            +      D + F +   DA+ ++WD+ 
Sbjct: 222 ITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT 281

Query: 215 DGSCKQTFPGHESDINAVT---FFPNGWAFATGSDDATCRLFDI 255
              C Q +   +  +                + S D T   +++
Sbjct: 282 TSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 4e-08
 Identities = 36/314 (11%), Positives = 78/314 (24%), Gaps = 25/314 (7%)

Query: 49  RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPL----RSSWVMTCA 104
            T R        + +   +  +         +       +KV  +       SS V T  
Sbjct: 14  STQRNF---TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVK 70

Query: 105 YAP--SGSFVACGGLDNICSIYSLKTREGNVRV----SRELPGHTGYLSCCRFLDDNQ-- 156
           ++P     ++  G       ++     + +  V      E     G +S   +  + +  
Sbjct: 71  FSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL 130

Query: 157 -IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAK----LW 211
            +V    D        ++G       GH+  + +  L            D  +       
Sbjct: 131 CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 190

Query: 212 DIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCR--LFDIRADQELAMYSHDNI 269
             +  +  +T     S +  V F P+   F                  +    +      
Sbjct: 191 PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP 250

Query: 270 ICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVT---EDGMA 326
           + G          +       D    VWD   ++          ++    V         
Sbjct: 251 VQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 310

Query: 327 VATGSWDSFLRIWN 340
           + + S D  L  + 
Sbjct: 311 IISLSLDGTLNFYE 324

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 53.0 bits (126), Expect = 2e-08
 Identities = 35/317 (11%), Positives = 76/317 (23%), Gaps = 43/317 (13%)

Query: 63  WGSDSRNL--VSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
              D  NL  V+    G++ + D  +   V  I      V     + SG ++   G D  
Sbjct: 26  NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHISRMSASGRYLLVIGRDAR 84

Query: 121 CSIYSLKTREGNVRVS-RELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCAS 179
             +  L  +E       +         S      +++   +          ++       
Sbjct: 85  IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144

Query: 180 FI-------------GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC--KQTFPG 224
            I                  V ++  + +   F+    +    L            T  G
Sbjct: 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG 204

Query: 225 HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL--------------AMYSHDNII 270
               +    +  +   F T ++++         D+ L                       
Sbjct: 205 AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY 264

Query: 271 CGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVA-- 328
             + S +    G + L G D  N   +   K      L G       +        +   
Sbjct: 265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE---LQGQGGGSLFIKTHPKSSHLYVD 321

Query: 329 -----TGSWDSFLRIWN 340
                       + +++
Sbjct: 322 TTFNPDARISQSVAVFD 338

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 21/196 (10%), Positives = 51/196 (26%), Gaps = 31/196 (15%)

Query: 60  AMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD- 118
             +        + AS +    + +   T KV  +  +    +T     +  F+A GG D 
Sbjct: 157 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS 216

Query: 119 ----------NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ------------ 156
                     N   +  + +++  +    ++           F+                
Sbjct: 217 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDG 276

Query: 157 IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV-------SGACDASAK 209
            ++  G            ++ A   G  G  + +   P                   S  
Sbjct: 277 SISLIGTDPK-NHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA 335

Query: 210 LWDIRDGSCKQTFPGH 225
           ++D+++   K      
Sbjct: 336 VFDLKNLDAKYQVLPI 351

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.5 bits (103), Expect = 8e-06
 Identities = 37/272 (13%), Positives = 71/272 (26%), Gaps = 7/272 (2%)

Query: 71  VSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFV-ACGGLDNICSIYSLKTR 129
           ++ S+   + V D  +      IP+  S  M    +P G+ V       N  SI    T 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 130 EGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMS 189
                V   +P  +         D  Q+  ++   S       T    A  +      + 
Sbjct: 65  ----NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLG 120

Query: 190 LSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDAT 249
           L+L+PD +                                  +   P+G      + D+ 
Sbjct: 121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSM 180

Query: 250 CRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA 309
                      +             +V    +   +      FN        T +     
Sbjct: 181 SISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI 240

Query: 310 GHDNRVSCLGVTEDG-MAVATGSWDSFLRIWN 340
                 + + VT DG       S+ + + + +
Sbjct: 241 PVGPDPAGIAVTPDGKKVYVALSFCNTVSVID 272

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 8/74 (10%), Positives = 23/74 (31%), Gaps = 2/74 (2%)

Query: 199 FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG-WAFATGSDDATCRLFDIRA 257
           +++ +   +  + D+       T P   S+       P+G   +   +      + D   
Sbjct: 5   YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63

Query: 258 DQELAMYSHDNIIC 271
           +  +A     +   
Sbjct: 64  NNVIATVPAGSSPQ 77

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 18/183 (9%), Positives = 35/183 (19%), Gaps = 2/183 (1%)

Query: 81  VWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELP 140
                T+N V          +  A +P G  +      +          +  +       
Sbjct: 99  SVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR 158

Query: 141 GHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV 200
              G                S  +S       +             +             
Sbjct: 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTN 218

Query: 201 SGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG-WAFATGSDDATCRLFDIRADQ 259
                 +  + D          P    D   +   P+G   +   S   T  + D   + 
Sbjct: 219 VDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277

Query: 260 ELA 262
             A
Sbjct: 278 ITA 280

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 23/190 (12%), Positives = 51/190 (26%), Gaps = 7/190 (3%)

Query: 158 VTSSGDMSCALWDI--ETGQQCASFIGHTGDVMSLSLAPDMRT-FVSGACDASAKLWDIR 214
           + S       +W++  E        +   G V  + ++PD R  +V    +     + I 
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67

Query: 215 DGSCKQTFPGHE---SDINAVTFFPNGWAFATGSDDA-TCRLFDIRADQELAMYSHDNII 270
                 TF         +  ++    G     GS +A    +  +     + +      +
Sbjct: 68  PDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL 127

Query: 271 CGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATG 330
            G  S   S   R L       +     ++  +   +        +  G     M     
Sbjct: 128 DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN 187

Query: 331 SWDSFLRIWN 340
              ++     
Sbjct: 188 EQYAYCVNEL 197

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 29/254 (11%), Positives = 61/254 (24%), Gaps = 57/254 (22%)

Query: 57  KIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSS----------WVMTCAYA 106
            +        + +   A   GK      Y + +   +                    A  
Sbjct: 167 DVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV 226

Query: 107 PSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMS- 165
            +G+F   G          +  R  +   +R +P             D +   ++G +S 
Sbjct: 227 KAGNFKTIGDSKVP----VVDGRGES-EFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSP 280

Query: 166 -CALWDIETGQQC--------ASFIGHTGD---VMSLSLAPDMRTFVSGACDASAKLWD- 212
             ++  I+              + +         +  +       + +   D+    W+ 
Sbjct: 281 TVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI 340

Query: 213 --------------IRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCR------- 251
                         IR     Q  PGH       +   +G      S  +  R       
Sbjct: 341 ADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPL 400

Query: 252 ------LFDIRADQ 259
                 L DI  ++
Sbjct: 401 HPENDQLIDISGEE 414

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.98
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.85
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.78
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.66
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.64
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.55
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.32
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.31
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.3
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.26
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.23
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.21
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.18
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.16
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.16
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.15
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.14
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.05
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.02
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.97
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.94
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.78
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.61
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.54
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.38
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.22
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.2
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.97
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.85
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.79
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.73
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.53
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.4
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.25
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.05
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.91
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.82
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.56
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.36
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.26
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.1
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.68
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.75
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.47
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.29
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.34
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.2
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.17
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.74
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	92.33
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	92.0
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.98
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.63
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	91.52
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	88.76
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	87.59
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	84.0
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	82.54

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.1e-56  Score=384.92  Aligned_cols=340  Identities=85%  Similarity=1.406  Sum_probs=314.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCccccceeeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEE
Q psy15421          1 MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLI   80 (340)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~   80 (340)
                      |.|+|.+|+|.+.++..++.+++...+..+........+..+++.+.+++|+||.++|++++|+|++++|+||+.||+|+
T Consensus         1 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~   80 (340)
T d1tbga_           1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLI   80 (340)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHTTTSCCCCCCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhhccCcccccceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCcee
Confidence            88999999999999999999999888887777777888888889999999999999999999999999999999999999


Q ss_pred             EEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEE
Q psy15421         81 VWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTS  160 (340)
Q Consensus        81 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~  160 (340)
                      |||+.+++.+..+..|..+|.+++|+|++.++++|+.|+.+++|+.............+.+|...........+..+...
T Consensus        81 iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (340)
T d1tbga_          81 IWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS  160 (340)
T ss_dssp             EEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEE
T ss_pred             eeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999988766655666777888888777776677788889


Q ss_pred             eCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCE
Q psy15421        161 SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA  240 (340)
Q Consensus       161 ~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~  240 (340)
                      ..+.....+.............+...+....+.+...++++|+.|+.|++||+++++++..+.+|..+|++++|+|++.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~  240 (340)
T d1tbga_         161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA  240 (340)
T ss_dssp             ETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             cccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCE
Confidence            99999999999888777777788888999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEE
Q psy15421        241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV  320 (340)
Q Consensus       241 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~  320 (340)
                      |++|+.|+.|++||++....+..+.......++.+++|+|++++|++|+.||.|++||..+++++..+.+|.++|++++|
T Consensus       241 l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~  320 (340)
T d1tbga_         241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV  320 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             EEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence            99999999999999998888777665555667999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEeeCCCcEEecC
Q psy15421        321 TEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       321 s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +||+.+|+|||.||+|+|||
T Consensus       321 s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         321 TDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTSSCEEEEETTSCEEEEC
T ss_pred             eCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999998

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.5e-48  Score=329.40  Aligned_cols=287  Identities=23%  Similarity=0.390  Sum_probs=263.0

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      +.+|+||.++|++++|+|++++|+||+.||+|+|||+.+++.+.++..|...|.+++|+|++.+++++..++.+.+|+..
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ   89 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDA  206 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg  206 (340)
                      ...    ....+.+|...+.++.+.++ ..+++++.|+.+++||+++++....+.+|...+.+++++|++.++++|+.|+
T Consensus        90 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  165 (317)
T d1vyhc1          90 GFE----CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ  165 (317)
T ss_dssp             SSC----EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccc----cccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCC
Confidence            543    33456678888888888765 5688999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEECCCCeeeeEecCCCCCeEEEEEecCC--------------------CEEEEEeCCCcEEEEeCcCCcEEEEeec
Q psy15421        207 SAKLWDIRDGSCKQTFPGHESDINAVTFFPNG--------------------WAFATGSDDATCRLFDIRADQELAMYSH  266 (340)
Q Consensus       207 ~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~--------------------~~l~s~s~d~~i~iwd~~~~~~~~~~~~  266 (340)
                      .|++|+++++.....+.+|...+.++.++|++                    ..+++++.|+.|++||+.+++.+..+..
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  245 (317)
T d1vyhc1         166 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG  245 (317)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeC
Confidence            99999999999999999999999999998754                    4689999999999999999888776542


Q ss_pred             CCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        267 DNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       267 ~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                        +...|.+++|+|++++|++|+.||.|++||..+++++..+.+|.+.|++++|+|++++|+|||.||+|+|||
T Consensus       246 --~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         246 --HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             --CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             --CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence              234699999999999999999999999999999999999999999999999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-47  Score=331.81  Aligned_cols=285  Identities=20%  Similarity=0.333  Sum_probs=250.2

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCee-----EEeeCCCCcEEEEEECCCCCEEEEEeCCCeE
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKV-----HAIPLRSSWVMTCAYAPSGSFVACGGLDNIC  121 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v  121 (340)
                      ..+++ +|...|.+++|+|++++|+||+ ||.|+|||+.+....     .....|...|.+++|+|++++|++|+.|+.|
T Consensus        44 ~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i  121 (337)
T d1gxra_          44 QINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL  121 (337)
T ss_dssp             EEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEE
T ss_pred             EEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccc
Confidence            33445 8999999999999999999987 899999998765422     2334688899999999999999999999999


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEE
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV  200 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  200 (340)
                      ++|++.....  .....+..|...+..+.+.+++ .+++++.|+.+.+|++.+++.......|...+.+++|++++..++
T Consensus       122 ~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~  199 (337)
T d1gxra_         122 SIWDLAAPTP--RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW  199 (337)
T ss_dssp             EEEECCCC----EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999875433  3445677889999998888765 678889999999999999998888889999999999999999999


Q ss_pred             EEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcC
Q psy15421        201 SGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSR  280 (340)
Q Consensus       201 sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  280 (340)
                      +|+.|+.|++||+++++.+..+. |..+|.+++|+|++.++++|+.|+.+++||+++.+......+   ...|++++|+|
T Consensus       200 ~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~i~~v~~s~  275 (337)
T d1gxra_         200 TGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH---ESCVLSLKFAY  275 (337)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCC---SSCEEEEEECT
T ss_pred             cccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccccccccccc---ccccceEEECC
Confidence            99999999999999998877765 888999999999999999999999999999998776654443   34699999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        281 SGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       281 ~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      ++++|++|+.|+.|++||..+++.+..+ +|.+.|++++|+|++++|++||.|++|+|||
T Consensus       276 ~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         276 CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            9999999999999999999998887765 5889999999999999999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.1e-45  Score=322.28  Aligned_cols=285  Identities=22%  Similarity=0.391  Sum_probs=236.5

Q ss_pred             ecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEee------------------CCCCcEEEEEECCCCCEE
Q psy15421         51 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP------------------LRSSWVMTCAYAPSGSFV  112 (340)
Q Consensus        51 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------------~~~~~i~~v~~~~~~~~l  112 (340)
                      ..+|.+.|++++|+|||++|++|+ |++|+|||+.+++.+..+.                  .|...|.+++|+|++++|
T Consensus        58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l  136 (388)
T d1erja_          58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL  136 (388)
T ss_dssp             EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred             eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence            347999999999999999999976 8999999999887765543                  355669999999999999


Q ss_pred             EEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEE
Q psy15421        113 ACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLS  191 (340)
Q Consensus       113 ~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~  191 (340)
                      ++|+.|+.|++|+...+.    ......+|...+.++.+.++ ..+++++.++.+++||.++.........+...+....
T Consensus       137 ~s~~~dg~v~i~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  212 (388)
T d1erja_         137 ATGAEDRLIRIWDIENRK----IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV  212 (388)
T ss_dssp             EEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             eecccccccccccccccc----cccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccc
Confidence            999999999999987643    44566789999999998765 4688899999999999998877766665555444444


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCeeeeEe-------cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEe
Q psy15421        192 LAPDMRTFVSGACDASAKLWDIRDGSCKQTF-------PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMY  264 (340)
Q Consensus       192 ~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~-------~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  264 (340)
                      +.+++.++++|+.||.|++||.+++.....+       .+|..+|.+++|+|++.+|++|+.|+.|++||+.........
T Consensus       213 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  292 (388)
T d1erja_         213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS  292 (388)
T ss_dssp             CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred             cCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccc
Confidence            4558889999999999999999988766544       368889999999999999999999999999998764432111


Q ss_pred             ----------ecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEE------CCCCCEEE
Q psy15421        265 ----------SHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV------TEDGMAVA  328 (340)
Q Consensus       265 ----------~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~------s~d~~~l~  328 (340)
                                ....+...|.+++|+|++++|++|+.||.|++||..+++++..+.+|.+.|.++++      +|++.+|+
T Consensus       293 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~  372 (388)
T d1erja_         293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA  372 (388)
T ss_dssp             ------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEE
T ss_pred             ccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEE
Confidence                      11122345899999999999999999999999999999999999999999999874      67999999


Q ss_pred             EeeCCCcEEecC
Q psy15421        329 TGSWDSFLRIWN  340 (340)
Q Consensus       329 s~s~D~~i~iW~  340 (340)
                      |||.||+|+|||
T Consensus       373 s~s~Dg~I~iW~  384 (388)
T d1erja_         373 TGSGDCKARIWK  384 (388)
T ss_dssp             EEETTSEEEEEE
T ss_pred             EEeCCCEEEEEe
Confidence            999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.2e-44  Score=308.65  Aligned_cols=285  Identities=14%  Similarity=0.210  Sum_probs=244.4

Q ss_pred             CccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCc
Q psy15421         53 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGN  132 (340)
Q Consensus        53 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~  132 (340)
                      .+.+....++++|+++.|+.++ ++.+.+||+.+.+....+..|...|.+++|+|+|++|++|+.|+.|++|++......
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~   93 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI   93 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence            4556677889999999998875 567999999998888888999999999999999999999999999999999875433


Q ss_pred             eEEEEeecCCCcceEEEEEcCCC-eEEEEeC--CCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCE-EEEEeCCCcE
Q psy15421        133 VRVSRELPGHTGYLSCCRFLDDN-QIVTSSG--DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRT-FVSGACDASA  208 (340)
Q Consensus       133 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~sg~~dg~i  208 (340)
                      .  ...+..|...|.++.|++++ .+++++.  +..+++|++++++....+.+|...|.+++|+|++++ +++|+.||.|
T Consensus        94 ~--~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i  171 (311)
T d1nr0a1          94 L--KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV  171 (311)
T ss_dssp             E--EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred             c--ccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence            2  34567899999999998776 4666664  566999999999888889999999999999999885 7889999999


Q ss_pred             EEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecC-----CcccceEEEEEcCCCc
Q psy15421        209 KLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHD-----NIICGITSVAFSRSGR  283 (340)
Q Consensus       209 ~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-----~~~~~i~~~~~s~~~~  283 (340)
                      ++||+++++....+.+|..+|+++.|+|++.++++++.|+.|++||......+..+...     .+...|++++|+|+++
T Consensus       172 ~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~  251 (311)
T d1nr0a1         172 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT  251 (311)
T ss_dssp             EEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS
T ss_pred             ccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCC
Confidence            99999999999999999999999999999999999999999999999988777665432     2345699999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCceeeeeeccCCc-ceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        284 LLLAGYDDFNCNVWDSMKTERAGILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       284 ~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~-~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +|++|+.|+.|++||..+++++..+..|.. ....+++.+++..|++++.||.|++||
T Consensus       252 ~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd  309 (311)
T d1nr0a1         252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN  309 (311)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEe
Confidence            999999999999999999999888876643 223334444556899999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.1e-43  Score=300.02  Aligned_cols=287  Identities=17%  Similarity=0.201  Sum_probs=229.0

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEee-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP-LRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      ..++++||.+.|++++|+|++++|+||+.||+|++||+.+++.+..+. .|...|.+++|+|++.++ +++.|+.+++|+
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~   82 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVP   82 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEEC
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccceeeEEEec
Confidence            467899999999999999999999999999999999999998887774 688899999999999765 567799999999


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                      ........ .......+...+..+.+.+++.+++++.++.+.+|+...  ....  .....+.+++|+|+++++++|+.|
T Consensus        83 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~--~~~~~~~~~~~s~~~~~l~~g~~d  157 (299)
T d1nr0a2          83 AGGSGVDS-SKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEV--PISYNSSCVALSNDKQFVAVGGQD  157 (299)
T ss_dssp             SSSSSSCT-TSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEE--ECSSCEEEEEECTTSCEEEEEETT
T ss_pred             cCCccccc-ccccccccccccccccccccccccccccccccccccccc--cccc--cccccccccccccccccccccccc
Confidence            76432211 111223456667788888888777777888999998643  2222  234468899999999999999999


Q ss_pred             CcEEEEECCCCeeee-EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEe-ecCCcccceEEEEEcCCCc
Q psy15421        206 ASAKLWDIRDGSCKQ-TFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMY-SHDNIICGITSVAFSRSGR  283 (340)
Q Consensus       206 g~i~~wd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~  283 (340)
                      |.|++||+++++... ....|..+|++++|+|++.++++++.|+.|++||+.+....... ....+...|++++|+|+++
T Consensus       158 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  237 (299)
T d1nr0a2         158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV  237 (299)
T ss_dssp             SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999998876543 34568899999999999999999999999999999876554322 2233445799999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCceee--eeeccC-CcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        284 LLLAGYDDFNCNVWDSMKTERA--GILAGH-DNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       284 ~l~~g~~d~~i~iw~~~~~~~~--~~~~~h-~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +|++|+.|+.|++||..+....  .....| ...|+++.| +++.+|+|||.|++|++||
T Consensus       238 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred             ceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEe
Confidence            9999999999999998765432  233334 456777655 5667999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.3e-42  Score=303.20  Aligned_cols=281  Identities=19%  Similarity=0.260  Sum_probs=229.0

Q ss_pred             cCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC--eeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCc
Q psy15421         55 LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN--KVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGN  132 (340)
Q Consensus        55 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~  132 (340)
                      .++|++++|+||+++||+|+.|+.|+|||..+++  .+..+++|..+|.+++|+|++++|++|+.|++|++|++..+.  
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~--   84 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT--   84 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE--
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc--
Confidence            4789999999999999999999999999987665  556788999999999999999999999999999999997543  


Q ss_pred             eEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceE----EEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q psy15421        133 VRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQC----ASFIGHTGDVMSLSLAPDMRTFVSGACDAS  207 (340)
Q Consensus       133 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~  207 (340)
                      ......+.+|...+.++.|.+++ .+++++.|+.+++|++......    .....|...|.+++|+|+++++++|+.|++
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence            23344566788999999998765 6889999999999998765432    223468889999999999999999999999


Q ss_pred             EEEEECCCC------------------eeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCc
Q psy15421        208 AKLWDIRDG------------------SCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNI  269 (340)
Q Consensus       208 i~~wd~~~~------------------~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~  269 (340)
                      |++||....                  .......+|...|.+++|+|++.++++++.|+.|++||+...+.+..+...  
T Consensus       165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--  242 (371)
T d1k8kc_         165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE--  242 (371)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS--
T ss_pred             EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecc--
Confidence            999997543                  234556778899999999999999999999999999999988877766432  


Q ss_pred             ccceEEEEEcCCCcEEEEEeCCCcEEEEe--CCCceeee---------------------------------------ee
Q psy15421        270 ICGITSVAFSRSGRLLLAGYDDFNCNVWD--SMKTERAG---------------------------------------IL  308 (340)
Q Consensus       270 ~~~i~~~~~s~~~~~l~~g~~d~~i~iw~--~~~~~~~~---------------------------------------~~  308 (340)
                      ..+|.+++|+|++++|++|. |+.+++|.  ........                                       ..
T Consensus       243 ~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (371)
T d1k8kc_         243 TLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD  321 (371)
T ss_dssp             SCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred             cccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceec
Confidence            34699999999999988776 55555554  22111100                                       01


Q ss_pred             ccCCcceEEEEECCCC----CEEEEeeCCCcEEecC
Q psy15421        309 AGHDNRVSCLGVTEDG----MAVATGSWDSFLRIWN  340 (340)
Q Consensus       309 ~~h~~~i~~~~~s~d~----~~l~s~s~D~~i~iW~  340 (340)
                      ..|.+.|+++++.+++    ..|+|+|.||.|+|||
T Consensus       322 ~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~  357 (371)
T d1k8kc_         322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  357 (371)
T ss_dssp             SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             ccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence            2388899999997754    3589999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-40  Score=284.93  Aligned_cols=285  Identities=24%  Similarity=0.395  Sum_probs=228.8

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      +..+.|+||.+.|.+ +++++|++|+|||.||+|+|||+.+++.+.++.+|...|.+++|+|+  +|++|+.|+.+++|+
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWN   83 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEE
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccc
Confidence            456789999999865 46678899999999999999999999999999999999999999874  999999999999999


Q ss_pred             ccCCCCceEEE---------E---------------------------eecCCCcceEEEEEcCCCeEEEEeCCCeEEEE
Q psy15421        126 LKTREGNVRVS---------R---------------------------ELPGHTGYLSCCRFLDDNQIVTSSGDMSCALW  169 (340)
Q Consensus       126 ~~~~~~~~~~~---------~---------------------------~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iw  169 (340)
                      ...........         .                           .+..+.. ...........++.++.|+.+++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~  162 (342)
T d2ovrb2          84 AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA-AVRCVQYDGRRVVSGAYDFMVKVW  162 (342)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSS-CEEEEEECSSCEEEEETTSCEEEE
T ss_pred             cccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccc-cceeeccccceeeeecCCCeEEEe
Confidence            76432111000         0                           0000000 111122234567888999999999


Q ss_pred             ECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCc
Q psy15421        170 DIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDAT  249 (340)
Q Consensus       170 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~  249 (340)
                      |+...+.+..+.+|...+..+.+  ++.++++|+.||.|++||++.++++..+.+|...+.++++++  .+|++|+.|+.
T Consensus       163 d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~  238 (342)
T d2ovrb2         163 DPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADST  238 (342)
T ss_dssp             EGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSC
T ss_pred             ecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCE
Confidence            99998888888888877666554  678999999999999999999999999999999998887765  59999999999


Q ss_pred             EEEEeCcCCcEEEEee-cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeee-----ccCCcceEEEEECCC
Q psy15421        250 CRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGIL-----AGHDNRVSCLGVTED  323 (340)
Q Consensus       250 i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~-----~~h~~~i~~~~~s~d  323 (340)
                      |++||....+....+. +..+...+.++.++  +.++++|+.||+|++||+.+++.+..+     .+|.+.|++++|+|+
T Consensus       239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~  316 (342)
T d2ovrb2         239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  316 (342)
T ss_dssp             EEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             EEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCC
Confidence            9999998877665543 33334456666665  579999999999999999999887765     367889999999999


Q ss_pred             CCEEEEeeCCCc----EEecC
Q psy15421        324 GMAVATGSWDSF----LRIWN  340 (340)
Q Consensus       324 ~~~l~s~s~D~~----i~iW~  340 (340)
                      +.+|++|+.||+    |++||
T Consensus       317 ~~~la~g~~dGt~~~~l~~~D  337 (342)
T d2ovrb2         317 KLVCAVGSRNGTEETKLLVLD  337 (342)
T ss_dssp             EEEEEEECSSSSSCCEEEEEE
T ss_pred             CCEEEEEeCCCCCeeEEEEEe
Confidence            999999999996    88886

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-39  Score=283.48  Aligned_cols=280  Identities=18%  Similarity=0.255  Sum_probs=217.8

Q ss_pred             eEEecCccCcE-EEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         48 RRTLRGHLAKI-YAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        48 ~~~~~~h~~~v-~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      +.+|+||.+.| .|++|  ++++|+||+.||+|+|||+.+++.+.++.+|..+|.+++|+|+ .+|++|+.|+.+++|+.
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence            56799999886 55554  6789999999999999999999999999999999999999985 58999999999999998


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEc------------------------------------------------------
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFL------------------------------------------------------  152 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~------------------------------------------------------  152 (340)
                      .......  ......+........+.                                                      
T Consensus        82 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          82 KKGCCTH--VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             TTTEEEE--EECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             ccccccc--ccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence            7542111  00001111111111111                                                      


Q ss_pred             ----------CCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEe
Q psy15421        153 ----------DDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTF  222 (340)
Q Consensus       153 ----------~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~  222 (340)
                                .++.++++..|+.+++||+.+++.+....++...+.++.++|++..+++++.|+.|++||++++.++..+
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  239 (355)
T d1nexb2         160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  239 (355)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc
Confidence                      1234555556666666666666666666677788889999999999999999999999999999999999


Q ss_pred             cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc
Q psy15421        223 PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT  302 (340)
Q Consensus       223 ~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~  302 (340)
                      ++|...|.++++++  .++++|+.||.|++||+++........+ ...  .....++|+++++++|+ |+.|++||..++
T Consensus       240 ~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~--~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg  313 (355)
T d1nexb2         240 QGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHH-TNL--SAITTFYVSDNILVSGS-ENQFNIYNLRSG  313 (355)
T ss_dssp             CCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEEC-TTC--CCCCEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred             cccccccccccccc--ceeeeeecccccccccccccceeccccc-CCc--eEEEEEcCCCCEEEEEe-CCEEEEEECCCC
Confidence            99999999998874  6999999999999999998766544332 221  22235678888877765 789999999999


Q ss_pred             eeee-eeccCCcceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        303 ERAG-ILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       303 ~~~~-~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      +.+. .+.+|.+.|++++|+|+ .+++++|.||+++||
T Consensus       314 ~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~  350 (355)
T d1nexb2         314 KLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLE  350 (355)
T ss_dssp             CBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred             CEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEE
Confidence            8875 56789999999999997 478899999998776

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.4e-39  Score=278.75  Aligned_cols=248  Identities=18%  Similarity=0.246  Sum_probs=212.5

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCee--EEeeCCCCcEEEEEECCCCCEEEEEeCC--CeE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKV--HAIPLRSSWVMTCAYAPSGSFVACGGLD--NIC  121 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~i~~v~~~~~~~~l~~~~~d--~~v  121 (340)
                      ...+.+.+|.+.|++++|+|++++|++|+.||+|+|||+.+.+..  ..+..|...|.+++|+|+++++++++.+  ..+
T Consensus        49 ~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~  128 (311)
T d1nr0a1          49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG  128 (311)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccc
Confidence            345678999999999999999999999999999999999887643  5578899999999999999999998764  568


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCCC--eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEE
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN--QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTF  199 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  199 (340)
                      ++|++.++.    ....+.+|...|.++.|++++  .+++++.|+.|++||+++++....+..|...|.++.++|+++++
T Consensus       129 ~v~~~~~~~----~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l  204 (311)
T d1nr0a1         129 HVFLFDTGT----SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF  204 (311)
T ss_dssp             EEEETTTCC----BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             ccccccccc----ccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccc
Confidence            999998654    234567899999999998754  47789999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCeeeeEec-------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCC-ccc
Q psy15421        200 VSGACDASAKLWDIRDGSCKQTFP-------GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDN-IIC  271 (340)
Q Consensus       200 ~sg~~dg~i~~wd~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-~~~  271 (340)
                      ++|+.|+.|++||++++.....++       +|...|++++|+|++.+|++|+.||.|+|||+++++.+..+.... ...
T Consensus       205 ~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~  284 (311)
T d1nr0a1         205 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED  284 (311)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccc
Confidence            999999999999999887766553       688899999999999999999999999999999988877665332 223


Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEEEeC
Q psy15421        272 GITSVAFSRSGRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       272 ~i~~~~~s~~~~~l~~g~~d~~i~iw~~  299 (340)
                      .+.++.|  ++..|++++.||.|++||.
T Consensus       285 ~~~~~~~--~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         285 QQLGIIW--TKQALVSISANGFINFVNP  310 (311)
T ss_dssp             CEEEEEE--CSSCEEEEETTCCEEEEET
T ss_pred             eEEEEEe--cCCEEEEEECCCEEEEEeC
Confidence            3444544  5568999999999999995

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-37  Score=260.91  Aligned_cols=274  Identities=22%  Similarity=0.357  Sum_probs=221.5

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK  127 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~  127 (340)
                      .+.+.+|...|+|++|  |+++|+||+.||+|+|||+.+++.+.++++|...|.+++|  ++++|++|+.|+.+++|++.
T Consensus         8 i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             EeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence            3456788999998764  7899999999999999999999999999999999998876  67899999999999999997


Q ss_pred             CCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCce---EEEEecCCCCeEEEEEcCCCCEEEEEeC
Q psy15421        128 TREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQ---CASFIGHTGDVMSLSLAPDMRTFVSGAC  204 (340)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~sg~~  204 (340)
                      .+...    .....+.. ...........++++..++.+.+|+......   ...+..|...+..+.+.+  ..+++++.
T Consensus        84 ~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~  156 (293)
T d1p22a2          84 TGEML----NTLIHHCE-AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASG  156 (293)
T ss_dssp             SCCEE----EEECCCCS-CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEET
T ss_pred             ccccc----cccccccc-ccccccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccC
Confidence            65422    12222222 2223344567889999999999999987653   344566888888777765  46889999


Q ss_pred             CCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcE
Q psy15421        205 DASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRL  284 (340)
Q Consensus       205 dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
                      |+.|++||+++++++..+++|...+..+.++  +.++++++.|+.|++||+++.+.+..+...  ...+.  .+++++.+
T Consensus       157 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~--~~~~~~~~  230 (293)
T d1p22a2         157 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVR--CIRFDNKR  230 (293)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEE--EEECCSSE
T ss_pred             CCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeeccc--ceeee--eccccceE
Confidence            9999999999999999999999888887776  568999999999999999988877655322  22343  46778899


Q ss_pred             EEEEeCCCcEEEEeCCC---------ceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        285 LLAGYDDFNCNVWDSMK---------TERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       285 l~~g~~d~~i~iw~~~~---------~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |++|+.||.|++||...         ...+..+.+|.+.|++++|+  +.+|+|||.||+|+|||
T Consensus       231 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             EEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            99999999999998532         23567788999999999984  56899999999999998

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-37  Score=267.37  Aligned_cols=242  Identities=17%  Similarity=0.240  Sum_probs=214.3

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCC--CeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTT--NKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSL  126 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~  126 (340)
                      ....+|.+.|.+++|+|++++|++++.||+|++||+...  +....+..|...+..+.|+|++.++++++.++.+++|++
T Consensus        91 ~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~  170 (337)
T d1gxra_          91 LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            445689999999999999999999999999999998644  345667788899999999999999999999999999998


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                      .++.    ......+|...+.++.|+++ ..+++++.|+.+++||+++++.+..+ .|...+.+++|+|+++++++|+.|
T Consensus       171 ~~~~----~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d  245 (337)
T d1gxra_         171 HNQT----LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMES  245 (337)
T ss_dssp             TTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccc----ccccccccccccccccccccccccccccccccccccccccceeeccc-ccccceEEEEEcccccccceeccc
Confidence            7653    44566788999999999765 46888999999999999998877655 588899999999999999999999


Q ss_pred             CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEE
Q psy15421        206 ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLL  285 (340)
Q Consensus       206 g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
                      +.|++||++++... ....|...|++++|+|++++|++|+.|+.|++||..+++.+..+.+.   ..|.+++|+|++++|
T Consensus       246 ~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l  321 (337)
T d1gxra_         246 SNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYI  321 (337)
T ss_dssp             SCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEE
T ss_pred             cccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---CCEEEEEEeCCCCEE
Confidence            99999999988754 45679999999999999999999999999999999998888776654   368999999999999


Q ss_pred             EEEeCCCcEEEEeC
Q psy15421        286 LAGYDDFNCNVWDS  299 (340)
Q Consensus       286 ~~g~~d~~i~iw~~  299 (340)
                      ++|+.|++|++||+
T Consensus       322 ~t~s~D~~I~vWdl  335 (337)
T d1gxra_         322 VTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEETTSCEEEEEE
T ss_pred             EEEeCCCeEEEEEE
Confidence            99999999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-37  Score=264.22  Aligned_cols=269  Identities=14%  Similarity=0.182  Sum_probs=216.1

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      +..++|+||.++|++++|+|    |+||+.||+|++||+.++     ...|...|.++.++++. .+++++.|+++++|+
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~   73 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNG   73 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEETT
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeecccccccc
Confidence            56789999999999999987    899999999999998653     35788899999998765 578899999999998


Q ss_pred             ccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        126 LKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                      +....           .......+.+.+++.++..+.+..+.+|+..+++....+..+ ..  ..+++|++..+++++.|
T Consensus        74 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~v~~~~  139 (287)
T d1pgua2          74 ITKHE-----------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN-SP--GSAVSLSQNYVAVGLEE  139 (287)
T ss_dssp             EEEEE-----------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS-SC--EEEEEECSSEEEEEETT
T ss_pred             ccccc-----------cccceeeeeeccCCceEEEeecccceeeeccceeeeeecccc-ce--eeeeeccCcceeeeccc
Confidence            75321           112234556677778777888889999999988877766533 33  34567778888887776


Q ss_pred             C-cEEEEECCCCeeeeEec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCC--
Q psy15421        206 A-SAKLWDIRDGSCKQTFP-GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRS--  281 (340)
Q Consensus       206 g-~i~~wd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~--  281 (340)
                      + .+++|++........+. .|..++.+++|+|++.+|++|+.||.|++||+.+.+..... ...+...|.+++|+|.  
T Consensus       140 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~~h~~~v~~~~~~p~~~  218 (287)
T d1pgua2         140 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR-WAFRTSKINAISWKPAEK  218 (287)
T ss_dssp             TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC-SCCCSSCEEEEEECCCC-
T ss_pred             cceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc-ccccccccceeeeccccc
Confidence            4 79999997665544443 57788999999999999999999999999999877654322 1233456999999875  


Q ss_pred             --------CcEEEEEeCCCcEEEEeCCC-ceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        282 --------GRLLLAGYDDFNCNVWDSMK-TERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       282 --------~~~l~~g~~d~~i~iw~~~~-~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                              +.+|++|+.|++|++|+..+ .+.+..+.+|.+.|++++|+|++ .|+|+|.|++|++||
T Consensus       219 ~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN  285 (287)
T ss_dssp             -----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred             ccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEE
Confidence                    46899999999999999866 55677788999999999999987 589999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-36  Score=266.92  Aligned_cols=290  Identities=18%  Similarity=0.212  Sum_probs=210.0

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCe------eEEeeCCCCcEEEE------EEC-CCCCEEE
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNK------VHAIPLRSSWVMTC------AYA-PSGSFVA  113 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~i~~v------~~~-~~~~~l~  113 (340)
                      .....++|.+.|+++++++  ++++|+|.|++|+|||..+.+.      ......|...+..+      ... .++.+++
T Consensus         6 ~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           6 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             eeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            3456789999999999865  6899999999999999765432      22233344332222      111 1345788


Q ss_pred             EEeCCCeEEEEEccCCCCceEEE-Eeec-----CCCcceEEEEEcC------CCeEEEEeCCCeEEEEECCCCce-----
Q psy15421        114 CGGLDNICSIYSLKTREGNVRVS-RELP-----GHTGYLSCCRFLD------DNQIVTSSGDMSCALWDIETGQQ-----  176 (340)
Q Consensus       114 ~~~~d~~v~i~~~~~~~~~~~~~-~~~~-----~~~~~v~~~~~~~------~~~l~~~~~d~~v~iwd~~~~~~-----  176 (340)
                      +++.|+.+++|++.......... ....     .+...+..+.+..      ...+++++.|+.+++|++.....     
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            99999999999987544322211 1111     1223344444432      23578899999999999743210     


Q ss_pred             -------------EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEe------cCCCCCeEEEEEecC
Q psy15421        177 -------------CASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTF------PGHESDINAVTFFPN  237 (340)
Q Consensus       177 -------------~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~------~~h~~~v~~v~~~~~  237 (340)
                                   ......+...+.+++|+|++ ++++|+.||+|++||+++++++..+      .+|..+|++++|+|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  242 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ  242 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred             eeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccc
Confidence                         01112345568899999987 8899999999999999998876544      468999999999999


Q ss_pred             CCEEEEEeCCCc---EEEEeCcCCcEEEEeec-----------CCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCce
Q psy15421        238 GWAFATGSDDAT---CRLFDIRADQELAMYSH-----------DNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTE  303 (340)
Q Consensus       238 ~~~l~s~s~d~~---i~iwd~~~~~~~~~~~~-----------~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~  303 (340)
                      |++|++|+.|++   |++||+.+++.+..+..           ..+...|++++|+|++++|++|+.|++|++||..+++
T Consensus       243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence            999999999975   89999998777665431           1344569999999999999999999999999999999


Q ss_pred             eeeeeccCCcceE----EEEECCCCC---------------------------EEEEeeCCCcEEec
Q psy15421        304 RAGILAGHDNRVS----CLGVTEDGM---------------------------AVATGSWDSFLRIW  339 (340)
Q Consensus       304 ~~~~~~~h~~~i~----~~~~s~d~~---------------------------~l~s~s~D~~i~iW  339 (340)
                      ++.++.+|.+.|.    .++|+|++.                           .|++++.|+.||+|
T Consensus       323 ~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~  389 (393)
T d1sq9a_         323 RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF  389 (393)
T ss_dssp             EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEE
T ss_pred             EEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEE
Confidence            9999999976654    234444432                           37778888888877

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-36  Score=260.26  Aligned_cols=282  Identities=14%  Similarity=0.142  Sum_probs=220.0

Q ss_pred             cEEEEEEcCCCCeEEEEeCCC-eEEEEeCCCCC--eeEEeeCCC-CcEEEEEECC--CCCEEEEEeCCCeEEEEEccCCC
Q psy15421         57 KIYAMHWGSDSRNLVSASQDG-KLIVWDSYTTN--KVHAIPLRS-SWVMTCAYAP--SGSFVACGGLDNICSIYSLKTRE  130 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~d~-~i~iwd~~~~~--~~~~~~~~~-~~i~~v~~~~--~~~~l~~~~~d~~v~i~~~~~~~  130 (340)
                      .+++++|+|+++.|+.++.+. .|+.|+....+  ....+.+|. ..|.+++|+|  ++.+|++|+.|++|++|++..+.
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            467899999999999876654 36677754433  345666764 6799999998  57899999999999999987543


Q ss_pred             CceE----EEEeecCCCcceEEEEEcCCC-eEEEEe--CCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCE-EEEE
Q psy15421        131 GNVR----VSRELPGHTGYLSCCRFLDDN-QIVTSS--GDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRT-FVSG  202 (340)
Q Consensus       131 ~~~~----~~~~~~~~~~~v~~~~~~~~~-~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~sg  202 (340)
                      ....    .......|.+.|.++.|++++ .+++++  .++.+.+|+..+++.+..+.+|...+.+++|+|++.+ ++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  178 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV  178 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred             ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEe
Confidence            3221    223345788899999998775 455544  3778999999999999999999999999999998875 6789


Q ss_pred             eCCCcEEEEECCCCeeeeEe---cCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEE
Q psy15421        203 ACDASAKLWDIRDGSCKQTF---PGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAF  278 (340)
Q Consensus       203 ~~dg~i~~wd~~~~~~~~~~---~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  278 (340)
                      +.|+.+++||.+..+....+   .+|...|.+++|+|+ +.++++++.|+.|++||+++.+.+..+....  ..+..+.|
T Consensus       179 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~--~~v~~~~~  256 (325)
T d1pgua1         179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ--EPVQGGIF  256 (325)
T ss_dssp             ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTT--BCCCSCEE
T ss_pred             ecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccc--ccccccee
Confidence            99999999999887765544   467788999999997 6899999999999999999888777664221  22333333


Q ss_pred             c---CCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcc--eEEEEECCC-CCEEEEeeCCCcEEecC
Q psy15421        279 S---RSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNR--VSCLGVTED-GMAVATGSWDSFLRIWN  340 (340)
Q Consensus       279 s---~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~--i~~~~~s~d-~~~l~s~s~D~~i~iW~  340 (340)
                      +   |++++|++|+.|+.|++||..+++++..+..|...  +..+++.+. +.+|+|||.||+|+|||
T Consensus       257 s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE  324 (325)
T ss_dssp             EEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             eeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence            3   68999999999999999999999988877665543  444555433 34799999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-35  Score=253.44  Aligned_cols=247  Identities=25%  Similarity=0.391  Sum_probs=221.4

Q ss_pred             CeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeE
Q psy15421         88 NKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSC  166 (340)
Q Consensus        88 ~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v  166 (340)
                      ...+.+.+|...|.+++|+|++++|++|+.|++|++|++.+++    ....+.+|...|.++.+.+++ .++++..++.+
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~----~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~   83 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD----FERTLKGHTDSVQDISFDHSGKLLASCSADMTI   83 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC----CCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred             CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC----EEEEEeCCCCcEEEEeeeccccccccccccccc
Confidence            3456789999999999999999999999999999999997754    345677899999999998765 57778889999


Q ss_pred             EEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeC
Q psy15421        167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSD  246 (340)
Q Consensus       167 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~  246 (340)
                      ..|+....+....+..|...+.++.++|++..+++++.|+.+++||+++++....+.+|...+.+++|+|++.+|++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  163 (317)
T d1vyhc1          84 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN  163 (317)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeC
Confidence            99999988888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCC--------------------CcEEEEEeCCCcEEEEeCCCceeee
Q psy15421        247 DATCRLFDIRADQELAMYSHDNIICGITSVAFSRS--------------------GRLLLAGYDDFNCNVWDSMKTERAG  306 (340)
Q Consensus       247 d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~--------------------~~~l~~g~~d~~i~iw~~~~~~~~~  306 (340)
                      |+.|++|+..+.+.+..+..  +...+.++.|+|+                    +.++++|+.|+.|++|+..+++++.
T Consensus       164 d~~v~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~  241 (317)
T d1vyhc1         164 DQTVRVWVVATKECKAELRE--HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM  241 (317)
T ss_dssp             TSCEEEEETTTCCEEEEECC--CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCeEEEEeeccceeeEEEec--CCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEE
Confidence            99999999998877665532  2234677777764                    4579999999999999999999999


Q ss_pred             eeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        307 ILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       307 ~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .+.+|...|.+++|+|++++|++|+.||.|+|||
T Consensus       242 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  275 (317)
T d1vyhc1         242 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD  275 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred             EEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEE
Confidence            9999999999999999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-36  Score=266.94  Aligned_cols=240  Identities=19%  Similarity=0.236  Sum_probs=201.0

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCc
Q psy15421         97 SSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQ  175 (340)
Q Consensus        97 ~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~  175 (340)
                      .++|.+++|+|++++||+|+.|+.|++|+...+  .......+.+|...|.++.|+++ ++|++++.|++|++||+.++.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~--~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN--KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETT--EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCC--CEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence            367999999999999999999999999998753  33445667899999999999865 578899999999999998765


Q ss_pred             e--EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee----eeEecCCCCCeEEEEEecCCCEEEEEeCCCc
Q psy15421        176 Q--CASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC----KQTFPGHESDINAVTFFPNGWAFATGSDDAT  249 (340)
Q Consensus       176 ~--~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~----~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~  249 (340)
                      .  ...+.+|...+.+++|+|+++.+++|+.|+.|++|++.....    .....+|...|.+++|+|++.+|++|+.|+.
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence            4  344567888999999999999999999999999998866542    3345678899999999999999999999999


Q ss_pred             EEEEeCcCCcEE----------------EEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCc
Q psy15421        250 CRLFDIRADQEL----------------AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDN  313 (340)
Q Consensus       250 i~iwd~~~~~~~----------------~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~  313 (340)
                      +++||.......                .......+...|.+++|+|++++|++++.|+.|++||..++..+..+..|..
T Consensus       165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  244 (371)
T d1k8kc_         165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL  244 (371)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc
Confidence            999997643210                1111223344589999999999999999999999999999999999999999


Q ss_pred             ceEEEEECCCCCEEEEeeCCCcEEec
Q psy15421        314 RVSCLGVTEDGMAVATGSWDSFLRIW  339 (340)
Q Consensus       314 ~i~~~~~s~d~~~l~s~s~D~~i~iW  339 (340)
                      +|++++|+||+.+|++|+ |+.+++|
T Consensus       245 ~v~s~~fs~d~~~la~g~-d~~~~~~  269 (371)
T d1k8kc_         245 PLLAVTFITESSLVAAGH-DCFPVLF  269 (371)
T ss_dssp             CEEEEEEEETTEEEEEET-TSSCEEE
T ss_pred             cceeeeecCCCCEEEEEc-CCceEEE
Confidence            999999999998877665 7777766

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-35  Score=258.82  Aligned_cols=270  Identities=22%  Similarity=0.386  Sum_probs=217.3

Q ss_pred             eEEEEeCCCeEEEEeCCCCCee----EEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEE---------
Q psy15421         69 NLVSASQDGKLIVWDSYTTNKV----HAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV---------  135 (340)
Q Consensus        69 ~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~---------  135 (340)
                      ..+....++.+.+|+....+..    .....|.+.|.+++|+|+|++|++|+ |+.|++|++.++......         
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~  108 (388)
T d1erja_          30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD  108 (388)
T ss_dssp             TTSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred             cccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccc
Confidence            4567788899999997654422    23336899999999999999999986 889999999765421111         


Q ss_pred             -----EEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q psy15421        136 -----SRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAK  209 (340)
Q Consensus       136 -----~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~  209 (340)
                           ......|...|.++.|++++ .|++++.|+.|++||...++....+.+|...|.++++++++..+++|+.++.++
T Consensus       109 ~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~  188 (388)
T d1erja_         109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR  188 (388)
T ss_dssp             ----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeee
Confidence                 11234577789999998765 688999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCeeeeEecCCCCCeEEEEEe-cCCCEEEEEeCCCcEEEEeCcCCcEEEEeec-----CCcccceEEEEEcCCCc
Q psy15421        210 LWDIRDGSCKQTFPGHESDINAVTFF-PNGWAFATGSDDATCRLFDIRADQELAMYSH-----DNIICGITSVAFSRSGR  283 (340)
Q Consensus       210 ~wd~~~~~~~~~~~~h~~~v~~v~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-----~~~~~~i~~~~~s~~~~  283 (340)
                      +||.++.........+... .++.+. +++.+|++|+.|+.|++||..+......+..     ..+...|.+++|+|+++
T Consensus       189 ~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  267 (388)
T d1erja_         189 IWDLRTGQCSLTLSIEDGV-TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ  267 (388)
T ss_dssp             EEETTTTEEEEEEECSSCE-EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred             eeecccccccccccccccc-ccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC
Confidence            9999998877777655544 455555 5789999999999999999998776654432     12345699999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCce------------eeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        284 LLLAGYDDFNCNVWDSMKTE------------RAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       284 ~l~~g~~d~~i~iw~~~~~~------------~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +|++|+.|+.|++|+..+..            .......|...|.+++|+|++++|++|+.||+|++||
T Consensus       268 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd  336 (388)
T d1erja_         268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD  336 (388)
T ss_dssp             EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred             EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            99999999999999976543            2344567899999999999999999999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-35  Score=253.62  Aligned_cols=290  Identities=12%  Similarity=0.093  Sum_probs=214.6

Q ss_pred             EeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCee---EEeeCCCCcEEEEEECCC-CCEEEEEeCCCeEE
Q psy15421         47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKV---HAIPLRSSWVMTCAYAPS-GSFVACGGLDNICS  122 (340)
Q Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~i~~v~~~~~-~~~l~~~~~d~~v~  122 (340)
                      ..+.+++|.+.|++|+|+|++++|++|+.||+|+|||+.+....   .....|..+|.+++|+|+ +.++++|+.|+.++
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            34567899999999999999999999999999999998765533   233368899999999986 56899999999999


Q ss_pred             EEEccCCCCceEEEEeecCCCcceEE-EEEcCCCeEEEEeCCCeEEEEECCCCceEEEE----ecC--CCCeEEEEEcCC
Q psy15421        123 IYSLKTREGNVRVSRELPGHTGYLSC-CRFLDDNQIVTSSGDMSCALWDIETGQQCASF----IGH--TGDVMSLSLAPD  195 (340)
Q Consensus       123 i~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~----~~~--~~~v~~~~~~~~  195 (340)
                      +|++........   ....+...... ........+++++.++.+++||++.+......    ..+  ......+.+.++
T Consensus        83 ~w~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
T d1yfqa_          83 KVDLIGSPSFQA---LTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             EECSSSSSSEEE---CBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             eeeccccccccc---ccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeecc
Confidence            999876543221   11222222222 33345678899999999999998754432222    122  223456677788


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeeee---EecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCcCCcEE------EEe-
Q psy15421        196 MRTFVSGACDASAKLWDIRDGSCKQ---TFPGHESDINAVTFFP-NGWAFATGSDDATCRLFDIRADQEL------AMY-  264 (340)
Q Consensus       196 ~~~~~sg~~dg~i~~wd~~~~~~~~---~~~~h~~~v~~v~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~------~~~-  264 (340)
                      +..+++++.|+.|++||++......   ....+...+.+..+.| ++..+++++.||.+.+|+.......      ..+ 
T Consensus       160 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~  239 (342)
T d1yfqa_         160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence            8899999999999999998765332   2334445566666654 5779999999999999997643211      000 


Q ss_pred             ------ecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEe
Q psy15421        265 ------SHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI  338 (340)
Q Consensus       265 ------~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~i  338 (340)
                            ....+...+++++|+|++++|++|+.||.|++||..+.+++..+..+ ..+..++|+|+|.+|++|+.|.++++
T Consensus       240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~  318 (342)
T d1yfqa_         240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKT  318 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHH
T ss_pred             eeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEE
Confidence                  11233446899999999999999999999999999999988877543 34556788999999999999988877


Q ss_pred             cC
Q psy15421        339 WN  340 (340)
Q Consensus       339 W~  340 (340)
                      |.
T Consensus       319 ~~  320 (342)
T d1yfqa_         319 NA  320 (342)
T ss_dssp             CS
T ss_pred             ee
Confidence            73

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-34  Score=247.38  Aligned_cols=248  Identities=18%  Similarity=0.236  Sum_probs=199.0

Q ss_pred             eEEecCcc-CcEEEEEEcC--CCCeEEEEeCCCeEEEEeCCCCCee--------EEeeCCCCcEEEEEECCCCCEEEEEe
Q psy15421         48 RRTLRGHL-AKIYAMHWGS--DSRNLVSASQDGKLIVWDSYTTNKV--------HAIPLRSSWVMTCAYAPSGSFVACGG  116 (340)
Q Consensus        48 ~~~~~~h~-~~v~~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~--------~~~~~~~~~i~~v~~~~~~~~l~~~~  116 (340)
                      ...+.||. ..|++++|+|  ++.+|+||+.||+|+|||....+..        .....|..+|.+++|+++++++++++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  134 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  134 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence            35677885 6799999998  5679999999999999998654321        23456788999999999999998776


Q ss_pred             C--CCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC--eEEEEeCCCeEEEEECCCCceEEEEe---cCCCCeEE
Q psy15421        117 L--DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN--QIVTSSGDMSCALWDIETGQQCASFI---GHTGDVMS  189 (340)
Q Consensus       117 ~--d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~  189 (340)
                      .  ++.+++|+..++.    ....+.+|...+.++.|.+++  .+++++.|+.+++||+...+....+.   .|...|.+
T Consensus       135 ~~~~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~  210 (325)
T d1pgua1         135 EGRDNFGVFISWDSGN----SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD  210 (325)
T ss_dssp             CCSSCSEEEEETTTCC----EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE
T ss_pred             ccccceEEEEeecccc----cceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEE
Confidence            4  6778999987653    445677899999999998654  46788999999999998877665553   46778999


Q ss_pred             EEEcCC-CCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEe---cCCCEEEEEeCCCcEEEEeCcCCcEEEEee
Q psy15421        190 LSLAPD-MRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFF---PNGWAFATGSDDATCRLFDIRADQELAMYS  265 (340)
Q Consensus       190 ~~~~~~-~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~---~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  265 (340)
                      ++|+|+ +.++++|+.||.|++||+++++++..+++|..++.++.|+   |++.+|++++.|+.|+|||+++++.+..+.
T Consensus       211 v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~  290 (325)
T d1pgua1         211 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT  290 (325)
T ss_dssp             EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEE
Confidence            999997 5789999999999999999999999999998887766665   689999999999999999999988887665


Q ss_pred             cCCcccceEEEEEcCC-CcEEEEEeCCCcEEEEeC
Q psy15421        266 HDNIICGITSVAFSRS-GRLLLAGYDDFNCNVWDS  299 (340)
Q Consensus       266 ~~~~~~~i~~~~~s~~-~~~l~~g~~d~~i~iw~~  299 (340)
                      .......+..+++.+. +.+|++|+.||+|++||+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         291 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             ecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            4333323333333322 347889999999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3e-34  Score=244.52  Aligned_cols=244  Identities=15%  Similarity=0.162  Sum_probs=198.2

Q ss_pred             CCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEee-cCCCcceEEEEEcCCCeEEEEeCCCe
Q psy15421         87 TNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSREL-PGHTGYLSCCRFLDDNQIVTSSGDMS  165 (340)
Q Consensus        87 ~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~d~~  165 (340)
                      |+..+.+.+|...|.+++|+|++++|++|+.|++|++||+.++.    ....+ .+|...|.++.|.+++.+++++.|+.
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~----~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~   77 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI----SNRVFPDVHATMITGIKTTSKGDLFTVSWDDH   77 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEECSSCSCSSCEEEEEECTTSCEEEEETTTE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc----EEEEEcCCCCCcEEEEEeeccceeecccceee
Confidence            34567889999999999999999999999999999999997653    22333 47899999999999889999999999


Q ss_pred             EEEEECCCCce---EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEE
Q psy15421        166 CALWDIETGQQ---CASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA  242 (340)
Q Consensus       166 v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~  242 (340)
                      +++|+......   ......+...+.+++++|+++.++++ .++.+++|+...  .....  ....+.+++|+|++.+++
T Consensus        78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~  152 (299)
T d1nr0a2          78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVA  152 (299)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEE
T ss_pred             EEEeccCCcccccccccccccccccccccccccccccccc-cccccccccccc--ccccc--cccccccccccccccccc
Confidence            99999865421   12234567789999999999877655 567899998542  22222  344688999999999999


Q ss_pred             EEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceee---eeeccCCcceEEEE
Q psy15421        243 TGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERA---GILAGHDNRVSCLG  319 (340)
Q Consensus       243 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~---~~~~~h~~~i~~~~  319 (340)
                      +|+.|+.|++||+.+.+...... ..+...|++++|+|++++|++|+.|+.|++|+..+....   ..+.+|...|++++
T Consensus       153 ~g~~dg~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~  231 (299)
T d1nr0a2         153 VGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS  231 (299)
T ss_dssp             EEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE
T ss_pred             ccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999998765433221 122346999999999999999999999999998766443   35678999999999


Q ss_pred             ECCCCCEEEEeeCCCcEEecC
Q psy15421        320 VTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       320 ~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |+|++.+|++|+.|++|+|||
T Consensus       232 ~s~~~~~l~sgs~dg~i~iwd  252 (299)
T d1nr0a2         232 WSPDNVRLATGSLDNSVIVWN  252 (299)
T ss_dssp             ECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccceEEEcCCCEEEEEE
Confidence            999999999999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-31  Score=229.63  Aligned_cols=246  Identities=18%  Similarity=0.359  Sum_probs=202.8

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCC----eeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN----KVHAIPLRSSWVMTCAYAPSGSFVACGGLDNIC  121 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v  121 (340)
                      +..+++.+|...|.+++|+|+++++++++.|+.+++|+.....    ....+..|....... ....+..+.....+...
T Consensus        88 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  166 (340)
T d1tbga_          88 NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC-RFLDDNQIVTSSGDTTC  166 (340)
T ss_dssp             EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEE-EEEETTEEEEEETTTEE
T ss_pred             eeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccc-ccccccccccccccccc
Confidence            4456789999999999999999999999999999999976543    344556666655444 34456677778888888


Q ss_pred             EEEEccCCCCceEEEEeecCCCcceEEEEEcCC-CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEE
Q psy15421        122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV  200 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  200 (340)
                      ..+......    .......+...+....+.+. ..+++++.|+.|++||+++++....+.+|...|.+++|+|++++++
T Consensus       167 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~  242 (340)
T d1tbga_         167 ALWDIETGQ----QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA  242 (340)
T ss_dssp             EEEETTTTE----EEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ccccccccc----ccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEE
Confidence            888765432    22333445556666666554 5688899999999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEECCCCeeeeEe--cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEE
Q psy15421        201 SGACDASAKLWDIRDGSCKQTF--PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAF  278 (340)
Q Consensus       201 sg~~dg~i~~wd~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  278 (340)
                      +|+.||.|++||++.......+  ..+...|.+++|+|++.+|++|+.||.|++||+.+++.+..+.  .+..+|++++|
T Consensus       243 s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~H~~~V~~l~~  320 (340)
T d1tbga_         243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA--GHDNRVSCLGV  320 (340)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEE
T ss_pred             EEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEc--CCCCCEEEEEE
Confidence            9999999999999988876655  4566789999999999999999999999999999888877664  23346999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEe
Q psy15421        279 SRSGRLLLAGYDDFNCNVWD  298 (340)
Q Consensus       279 s~~~~~l~~g~~d~~i~iw~  298 (340)
                      +|++++|++|+.||.|++||
T Consensus       321 s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         321 TDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTSSCEEEEETTSCEEEEC
T ss_pred             eCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-31  Score=236.95  Aligned_cols=247  Identities=18%  Similarity=0.208  Sum_probs=180.8

Q ss_pred             EEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCce--EEEEeecCCCcceEEE------EEcCC--CeEEEE
Q psy15421         91 HAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNV--RVSRELPGHTGYLSCC------RFLDD--NQIVTS  160 (340)
Q Consensus        91 ~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~--~~~~~~~~~~~~v~~~------~~~~~--~~l~~~  160 (340)
                      ...++|...|.++++++  +++++++.|++|++|+..+.+...  ........|...+..+      .....  ..++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            34578999999998864  799999999999999976544211  1111222333322211      11111  235678


Q ss_pred             eCCCeEEEEECCCCceEEE-----E-----ecCCCCeEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCe--------
Q psy15421        161 SGDMSCALWDIETGQQCAS-----F-----IGHTGDVMSLSLAPD-----MRTFVSGACDASAKLWDIRDGS--------  217 (340)
Q Consensus       161 ~~d~~v~iwd~~~~~~~~~-----~-----~~~~~~v~~~~~~~~-----~~~~~sg~~dg~i~~wd~~~~~--------  217 (340)
                      +.|+.|++|++........     .     ..+...+..+++.++     +.++++++.||++++|++....        
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            8899999999764432111     1     124455777888765     3578899999999999974321        


Q ss_pred             ----------eeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeec----CCcccceEEEEEcCCCc
Q psy15421        218 ----------CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSH----DNIICGITSVAFSRSGR  283 (340)
Q Consensus       218 ----------~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~----~~~~~~i~~~~~s~~~~  283 (340)
                                .......+...+++++|+|++ +||+|+.|+.|++||+.+.+++..+..    ..+..+|++++|+|+|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  244 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS  244 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence                      011112345668899999998 899999999999999998887765532    23445799999999999


Q ss_pred             EEEEEeCCCc---EEEEeCCCceeeeee-------------ccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        284 LLLAGYDDFN---CNVWDSMKTERAGIL-------------AGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       284 ~l~~g~~d~~---i~iw~~~~~~~~~~~-------------~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +|++|+.|++   |++||..+++.+..+             .+|.+.|++++|+||+++|+|||.|++|+|||
T Consensus       245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence            9999999874   899999888776654             48999999999999999999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-30  Score=224.13  Aligned_cols=240  Identities=21%  Similarity=0.341  Sum_probs=194.3

Q ss_pred             eEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEE
Q psy15421         90 VHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALW  169 (340)
Q Consensus        90 ~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iw  169 (340)
                      ..++++|...|.+ ++++++++|++|+.|++|++||+.++    ....++.+|...|.++.|.+++.|++++.|+.|++|
T Consensus         5 ~~tL~GH~~~vit-c~~~~~~~l~tgs~Dg~i~vWd~~~~----~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw   79 (355)
T d1nexb2           5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINK----KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVW   79 (355)
T ss_dssp             EEEEECCSSSCEE-EEEEETTEEEEEETTTEEEEEETTTT----EEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEE
T ss_pred             cEEECCcCCCcEE-EEEECCCEEEEEeCCCeEEEEECCCC----cEEEEEECCCCCEEEEEEcCCCEEEEEecccccccc
Confidence            4578899887643 24557899999999999999999765    355678899999999999988899999999999999


Q ss_pred             ECCCCceEEEEecCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEe-----------------------cC
Q psy15421        170 DIETGQQCASFIGHTG--DVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTF-----------------------PG  224 (340)
Q Consensus       170 d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~-----------------------~~  224 (340)
                      ++...+..........  ......+.+++..+++++.|+.|++||+++.......                       ..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence            9998877665554333  3455677889999999999999999999875433211                       12


Q ss_pred             CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCcee
Q psy15421        225 HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTER  304 (340)
Q Consensus       225 h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~  304 (340)
                      |...+  ..+.+++.+++++..|+.|++||+.+.+.+.....  ....+.++.|+|++.++++++.|+.|++|+..++..
T Consensus       160 ~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  235 (355)
T d1nexb2         160 HMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG--HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL  235 (355)
T ss_dssp             CSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCE
T ss_pred             ccccc--cccccccceeeeecccceeeeeecccccceeeeec--cccccccccccccceeeecccccceEEeeecccccc
Confidence            33333  34556788999999999999999998877665432  233578999999999999999999999999999999


Q ss_pred             eeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        305 AGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       305 ~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +..+.+|...|+++++++  ++|++|+.||+|++||
T Consensus       236 ~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd  269 (355)
T d1nexb2         236 MYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWD  269 (355)
T ss_dssp             EEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEE
T ss_pred             cccccccccccccccccc--ceeeeeeccccccccc
Confidence            999999999999999975  5899999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=2.2e-31  Score=231.80  Aligned_cols=269  Identities=12%  Similarity=0.045  Sum_probs=207.7

Q ss_pred             EEEEEcC-CCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCC--eEEEEEccCCCCceEE
Q psy15421         59 YAMHWGS-DSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDN--ICSIYSLKTREGNVRV  135 (340)
Q Consensus        59 ~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~~~~  135 (340)
                      +.-.||| ||+++++++ +|.|++||+.++.....  .|...|.+++|+|||++|++++.+.  .+++|+...+.     
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-----   77 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-----   77 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-----
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-----
Confidence            4567999 999998876 47999999987766543  5888999999999999998877664  78999987643     


Q ss_pred             EEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEE----------eC
Q psy15421        136 SRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSG----------AC  204 (340)
Q Consensus       136 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg----------~~  204 (340)
                      ...+..|...+.++.|++++ .+++++.++.+.+|++.+++....+..|...+.+++|+|++++++.+          ..
T Consensus        78 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~  157 (360)
T d1k32a3          78 AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYV  157 (360)
T ss_dssp             EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCC
T ss_pred             EEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecc
Confidence            23456788999999998775 68889999999999999999888888899999999999999998853          44


Q ss_pred             CCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcE-------EEEee-cC---------
Q psy15421        205 DASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQE-------LAMYS-HD---------  267 (340)
Q Consensus       205 dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~-------~~~~~-~~---------  267 (340)
                      ++.+++||+.+++.... ..|...+..++|+|+|++|++++.|+.+++||......       ..... +.         
T Consensus       158 ~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  236 (360)
T d1k32a3         158 MQAIHVYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV  236 (360)
T ss_dssp             EEEEEEEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCC
T ss_pred             ccceeeeccccCceeee-cccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceEC
Confidence            56799999998876544 34667888999999999999999999999998653221       11000 00         


Q ss_pred             --------------C----------cccceEEEEEcCCCc-------------EEEEEeCCCcEEEEeCCCceeeeeecc
Q psy15421        268 --------------N----------IICGITSVAFSRSGR-------------LLLAGYDDFNCNVWDSMKTERAGILAG  310 (340)
Q Consensus       268 --------------~----------~~~~i~~~~~s~~~~-------------~l~~g~~d~~i~iw~~~~~~~~~~~~~  310 (340)
                                    .          .......+..++++.             ++++++.++.+++||..+.+.    ..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~  312 (360)
T d1k32a3         237 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TE  312 (360)
T ss_dssp             CGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE----EE
T ss_pred             CCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE----EE
Confidence                          0          000122333333322             345566788999999877643    34


Q ss_pred             CCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        311 HDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       311 h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      |.+.|.+++|||||++|++++.||.|++||
T Consensus       313 ~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d  342 (360)
T d1k32a3         313 VKNNLTDLRLSADRKTVMVRKDDGKIYTFP  342 (360)
T ss_dssp             EEEEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             ecCCcCEEEECCCCCEEEEEECCCeEEEEE
Confidence            556799999999999999999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.4e-29  Score=216.44  Aligned_cols=245  Identities=26%  Similarity=0.438  Sum_probs=189.8

Q ss_pred             EeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEe
Q psy15421         82 WDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSS  161 (340)
Q Consensus        82 wd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~  161 (340)
                      |+..+.+....+++|...|.+ +++++|++|++|+.|++|++||+.+++    ...++.+|...|.++.|.+ +.+++++
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~----~~~~~~~h~~~V~~v~~~~-~~l~s~s   74 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK----CLRTLVGHTGGVWSSQMRD-NIIISGS   74 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC----EEEECCCCSSCEEEEEEET-TEEEEEE
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC----EEEEEeCCCCCEEEEEeCC-Cccccce
Confidence            555566777889999998865 477789999999999999999997653    4567889999999999875 5899999


Q ss_pred             CCCeEEEEECCCCceEEEEecCCCCeE--------------------------------------EEEEcCCCCEEEEEe
Q psy15421        162 GDMSCALWDIETGQQCASFIGHTGDVM--------------------------------------SLSLAPDMRTFVSGA  203 (340)
Q Consensus       162 ~d~~v~iwd~~~~~~~~~~~~~~~~v~--------------------------------------~~~~~~~~~~~~sg~  203 (340)
                      .|+.+++|+............+...+.                                      .....+....+++++
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (342)
T d2ovrb2          75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA  154 (342)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE
T ss_pred             ecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeec
Confidence            999999999876544332221111111                                      112233456788899


Q ss_pred             CCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCc
Q psy15421        204 CDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR  283 (340)
Q Consensus       204 ~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  283 (340)
                      .|+.|++||.+...++..+.+|...+..+  .+++.++++|+.||.|++||++..+.+..+..  +...+.++.++  ++
T Consensus       155 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~--~~~~v~~~~~~--~~  228 (342)
T d2ovrb2         155 YDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG--HQSLTSGMELK--DN  228 (342)
T ss_dssp             TTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETTTCCEEEEECC--CCSCEEEEEEE--TT
T ss_pred             CCCeEEEeecccceeeEEEcCcccccccc--cCCCCEEEEEeCCCeEEEeecccceeeeEecc--cccceeEEecC--CC
Confidence            99999999999998888998888776554  55688999999999999999998887765542  22346666665  46


Q ss_pred             EEEEEeCCCcEEEEeCCCceeeeeecc---CCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        284 LLLAGYDDFNCNVWDSMKTERAGILAG---HDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       284 ~l~~g~~d~~i~iw~~~~~~~~~~~~~---h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      +|++|+.|+.|++|+....+....+..   |...+.++.+++  .++++|+.||+|+|||
T Consensus       229 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~s~Dg~i~iwd  286 (342)
T d2ovrb2         229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWD  286 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCEEEEEecccccccccccccceeeeceeecccCC--CeeEEEcCCCEEEEEE
Confidence            999999999999999888777666554   566777777655  5999999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.1e-29  Score=213.92  Aligned_cols=251  Identities=13%  Similarity=0.124  Sum_probs=187.3

Q ss_pred             eeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC-C-eEEEEeCCCeE
Q psy15421         89 KVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-N-QIVTSSGDMSC  166 (340)
Q Consensus        89 ~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~d~~v  166 (340)
                      .+....+|.+.|.+++|+|++++|++|+.|++|++|++......... ....+|...|.++.|.++ + .+++|+.|+.|
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~-~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE-EEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEE-EEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            44556789999999999999999999999999999999876544333 333469999999999754 3 68889999999


Q ss_pred             EEEECCCCceEEEEecCCCC-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeee----eEecCC--CCCeEEEEEecCCC
Q psy15421        167 ALWDIETGQQCASFIGHTGD-VMSLSLAPDMRTFVSGACDASAKLWDIRDGSCK----QTFPGH--ESDINAVTFFPNGW  239 (340)
Q Consensus       167 ~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~----~~~~~h--~~~v~~v~~~~~~~  239 (340)
                      ++|++..+........+... .....+.++...+++++.|+++++||++.+...    .....+  ........+.+.+.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            99999888766665554443 445566778889999999999999998654322    222222  22345667788899


Q ss_pred             EEEEEeCCCcEEEEeCcCCcEEEEe-ecCCcccceEEEEE-cCCCcEEEEEeCCCcEEEEeCCCcee-------------
Q psy15421        240 AFATGSDDATCRLFDIRADQELAMY-SHDNIICGITSVAF-SRSGRLLLAGYDDFNCNVWDSMKTER-------------  304 (340)
Q Consensus       240 ~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~~~~i~~~~~-s~~~~~l~~g~~d~~i~iw~~~~~~~-------------  304 (340)
                      .+++++.|+.|++||+...+..... ........+.+..+ .+++..+++++.||.+.+|+......             
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            9999999999999998765432211 11122223445455 45678999999999999998643211             


Q ss_pred             --eeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        305 --AGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       305 --~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                        .....+|...|++++|+|++.+|+|||.||+|+|||
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD  279 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEE
Confidence              112345777899999999999999999999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-27  Score=201.42  Aligned_cols=250  Identities=21%  Similarity=0.388  Sum_probs=197.7

Q ss_pred             CCCccccceeeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEE
Q psy15421         35 GNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVAC  114 (340)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~  114 (340)
                      +.+..++....+..++|++|.+.|++++|  ++++|+||+.|++|++|+...+........+....  ..+.+....+++
T Consensus        35 g~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  110 (293)
T d1p22a2          35 NTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVT  110 (293)
T ss_dssp             SCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCE--EEEECCTTEEEE
T ss_pred             CeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccccccccc--ccccccccceee
Confidence            34444444445667899999999999987  57799999999999999999888776665544433  335566778899


Q ss_pred             EeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcC
Q psy15421        115 GGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAP  194 (340)
Q Consensus       115 ~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  194 (340)
                      +..++.+.+|+....... .....+..|...+....+. ...+++++.|+.+++||+++++.+..+.++...+..+.++ 
T Consensus       111 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~-~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-  187 (293)
T d1p22a2         111 CSKDRSIAVWDMASPTDI-TLRRVLVGHRAAVNVVDFD-DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-  187 (293)
T ss_dssp             EETTSCEEEEECSSSSCC-EEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-
T ss_pred             cccccceeEeeccccccc-cccccccccccccccceec-ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC-
Confidence            999999999998765433 3445566788888776654 4467788999999999999999999999998888888775 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCC---------cEEEEee
Q psy15421        195 DMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD---------QELAMYS  265 (340)
Q Consensus       195 ~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~---------~~~~~~~  265 (340)
                       +..+++++.||+|++||+++...+..+.+|...+..  +.+++.+|++|+.||.|++||+...         ..+..+ 
T Consensus       188 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-  263 (293)
T d1p22a2         188 -DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-  263 (293)
T ss_dssp             -TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-
T ss_pred             -CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEe-
Confidence             458999999999999999999999999989888765  5567889999999999999997532         223332 


Q ss_pred             cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEe
Q psy15421        266 HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD  298 (340)
Q Consensus       266 ~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~  298 (340)
                       ..+...|++++|+  +++|++|+.|++|++||
T Consensus       264 -~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         264 -VEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             -CCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             -cCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence             2233468888885  57899999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2e-28  Score=206.94  Aligned_cols=228  Identities=15%  Similarity=0.073  Sum_probs=184.5

Q ss_pred             CeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEE
Q psy15421         88 NKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCA  167 (340)
Q Consensus        88 ~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~  167 (340)
                      +.+.++.+|..+|.+++|+|    |++|+.|++|++|++.+.         ..+|...|.++.+.++..+++++.|++++
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~---------~~~h~~~V~~~~~~~~~~~~s~s~D~~v~   70 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM---------HQDHSNLIVSLDNSKAQEYSSISWDDTLK   70 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE---------ECCCCSCEEEEECCSTTCCEEEETTTEEE
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC---------CCCCCCCEEEEEecCCCeEEEEeeccccc
Confidence            46778999999999999987    899999999999997542         24789999999998888899999999999


Q ss_pred             EEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCC
Q psy15421        168 LWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDD  247 (340)
Q Consensus       168 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d  247 (340)
                      +|++...+       ....+..+++++++..+++ +.++.+.+|+..+++....++.+ .++  .+++|++..+++++.|
T Consensus        71 ~w~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~  139 (287)
T d1pgua2          71 VNGITKHE-------FGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVGLEE  139 (287)
T ss_dssp             ETTEEEEE-------CSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEEEETT
T ss_pred             cccccccc-------cccceeeeeeccCCceEEE-eecccceeeeccceeeeeecccc-cee--eeeeccCcceeeeccc
Confidence            99886432       3345778888888766665 55667889999988887777643 333  4667788888888877


Q ss_pred             C-cEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeee-eeccCCcceEEEEECCC--
Q psy15421        248 A-TCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAG-ILAGHDNRVSCLGVTED--  323 (340)
Q Consensus       248 ~-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~-~~~~h~~~i~~~~~s~d--  323 (340)
                      + .+++|++...+...... ......+++++|+|++++|++|+.|+.|++||..+++... .+.+|...|++++|+|+  
T Consensus       140 ~~~v~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~  218 (287)
T d1pgua2         140 GNTIQVFKLSDLEVSFDLK-TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK  218 (287)
T ss_dssp             TSCEEEEETTEEEEEEECS-SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-
T ss_pred             cceeeeeeccccceeeeee-eccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeeccccc
Confidence            5 69999987655443332 2233469999999999999999999999999998887654 57789999999999875  


Q ss_pred             --------CCEEEEeeCCCcEEecC
Q psy15421        324 --------GMAVATGSWDSFLRIWN  340 (340)
Q Consensus       324 --------~~~l~s~s~D~~i~iW~  340 (340)
                              +.+|+|||.|++|+|||
T Consensus       219 ~~~~~~~~~~~l~sgs~D~~i~iw~  243 (287)
T d1pgua2         219 GANEEEIEEDLVATGSLDTNIFIYS  243 (287)
T ss_dssp             -----CCSCCEEEEEETTSCEEEEE
T ss_pred             ccccccCCCCeeEeecCCCeEEEEE
Confidence                    46899999999999996

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=3.8e-24  Score=181.00  Aligned_cols=259  Identities=15%  Similarity=0.176  Sum_probs=200.4

Q ss_pred             EEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEE-EEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEE
Q psy15421         70 LVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFV-ACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSC  148 (340)
Q Consensus        70 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~  148 (340)
                      .++.+.|++|.+||+.+++.+.+++... .+..++|+|+|++| ++++.++.|++||+.+++    ....++.+... ..
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~-~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~----~~~~~~~~~~~-~~   78 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN----VIATVPAGSSP-QG   78 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE----EEEEEECSSSE-EE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCC-CceEEEEeCCCCEEEEEECCCCEEEEEECCCCc----eeeeeeccccc-cc
Confidence            4577899999999999999888887654 46789999999987 466788999999997653    33445555543 45


Q ss_pred             EEEcCCC-e-EEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeeeEecCC
Q psy15421        149 CRFLDDN-Q-IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV-SGACDASAKLWDIRDGSCKQTFPGH  225 (340)
Q Consensus       149 ~~~~~~~-~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-sg~~dg~i~~wd~~~~~~~~~~~~h  225 (340)
                      +.+.+++ . ++++..+..+.+|+..+++....+..+ ..+.+++++|++..++ ++..++.+.+|+..+......+..+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
T d1l0qa2          79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG  157 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             cccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC
Confidence            6666554 3 445667889999999998877766544 5678999999998765 5667899999999999888877754


Q ss_pred             CCCeEEEEEecCCCEEEEEeCC-CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeC---CCcEEEEeCCC
Q psy15421        226 ESDINAVTFFPNGWAFATGSDD-ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYD---DFNCNVWDSMK  301 (340)
Q Consensus       226 ~~~v~~v~~~~~~~~l~s~s~d-~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~---d~~i~iw~~~~  301 (340)
                       ..+..++++|++..+++++.+ +.+.+|+.............   ..+..++|++++..++++..   ++.|++||..+
T Consensus       158 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t  233 (301)
T d1l0qa2         158 -RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE---AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (301)
T ss_dssp             -SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS---SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             -CCceEEEeeccccceeeecccccccccccccceeeeeccccc---CCcceeeccccccccccccccceeeeeeeeecCC
Confidence             457889999999888877765 55667777666555444332   23678899999998876543   46899999999


Q ss_pred             ceeeeeeccCCcceEEEEECCCCCEE-EEeeCCCcEEecC
Q psy15421        302 TERAGILAGHDNRVSCLGVTEDGMAV-ATGSWDSFLRIWN  340 (340)
Q Consensus       302 ~~~~~~~~~h~~~i~~~~~s~d~~~l-~s~s~D~~i~iW~  340 (340)
                      ++....+.. ...+.+++|||||++| ++++.|++|++||
T Consensus       234 ~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D  272 (301)
T d1l0qa2         234 NKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVID  272 (301)
T ss_dssp             TEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CeEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            988877754 4567999999999976 6888899999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=1.3e-25  Score=194.82  Aligned_cols=251  Identities=10%  Similarity=0.063  Sum_probs=189.7

Q ss_pred             CccCcEEEEEEcCCCCeEEEEeCCC--eEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCC
Q psy15421         53 GHLAKIYAMHWGSDSRNLVSASQDG--KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTRE  130 (340)
Q Consensus        53 ~h~~~v~~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~  130 (340)
                      +|...|.+++|+||++.|++++.|.  .|++||..+++. ..+..|...+..++|+|++++|++++.++.+++|++..+.
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence            7999999999999999998877653  799999987764 4566788889999999999999999999999999987653


Q ss_pred             CceEEEEeecCCCcceEEEEEcCCCe-EEEE----------eCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEE
Q psy15421        131 GNVRVSRELPGHTGYLSCCRFLDDNQ-IVTS----------SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTF  199 (340)
Q Consensus       131 ~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~----------~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  199 (340)
                          ....+..|...+..+.|++++. |+.+          ..++.+++||+.+++. ..+..+...+..++|+|+++.+
T Consensus       119 ----~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~~~~spdg~~l  193 (360)
T d1k32a3         119 ----PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-FAATTENSHDYAPAFDADSKNL  193 (360)
T ss_dssp             ----EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-EECSCSSSBEEEEEECTTSCEE
T ss_pred             ----eeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCce-eeecccccccccccccCCCCEE
Confidence                3344556777788888988765 4432          2345799999988765 4445577788999999999999


Q ss_pred             EEEeCCCcEEEEECCCCee-------eeEecC------------------------------------CCCCeEEEEEec
Q psy15421        200 VSGACDASAKLWDIRDGSC-------KQTFPG------------------------------------HESDINAVTFFP  236 (340)
Q Consensus       200 ~sg~~dg~i~~wd~~~~~~-------~~~~~~------------------------------------h~~~v~~v~~~~  236 (340)
                      ++++.|+.+++||......       ...+..                                    ..+....+...+
T Consensus       194 ~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (360)
T d1k32a3         194 YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE  273 (360)
T ss_dssp             EEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS
T ss_pred             EEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecC
Confidence            9999999999998654321       111100                                    111222333333


Q ss_pred             CC-------------CEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCce
Q psy15421        237 NG-------------WAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTE  303 (340)
Q Consensus       237 ~~-------------~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~  303 (340)
                      ++             .++++++.++.|++||+.+.+.....      ..|.+++|+|||++|++++.||.|++|+..+++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~------~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETTSCEEEEESSCTT
T ss_pred             CCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEec------CCcCEEEECCCCCEEEEEECCCeEEEEECCCCC
Confidence            22             23466777899999999876543221      248899999999999999999999999999988


Q ss_pred             eeeeeccCCcce
Q psy15421        304 RAGILAGHDNRV  315 (340)
Q Consensus       304 ~~~~~~~h~~~i  315 (340)
                      ...++.-+..++
T Consensus       348 ~~~~~~~d~~~~  359 (360)
T d1k32a3         348 DERTVETDKRPL  359 (360)
T ss_dssp             SCEECCCCSSCE
T ss_pred             cceEEEeccccc
Confidence            888777666554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=4.1e-26  Score=203.96  Aligned_cols=271  Identities=14%  Similarity=0.020  Sum_probs=190.5

Q ss_pred             eEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEE-EEeecCCCcceE
Q psy15421         69 NLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV-SRELPGHTGYLS  147 (340)
Q Consensus        69 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~~~~~v~  147 (340)
                      ++++.+.||+|+|||+.+++.+.+++.+. .+..++|+|||+++++++.|+.+++||+.+++..... .....+|...+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            56788899999999999999999999875 5899999999999999999999999999876543221 122234555555


Q ss_pred             EEEEcCCC-eE-EEEeCCCeEEEEECCCCceEEEEecCCCC-----------eEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q psy15421        148 CCRFLDDN-QI-VTSSGDMSCALWDIETGQQCASFIGHTGD-----------VMSLSLAPDMRTFVSGA-CDASAKLWDI  213 (340)
Q Consensus       148 ~~~~~~~~-~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~~~sg~-~dg~i~~wd~  213 (340)
                      ...|++++ ++ +++..++.+.+||..+++.......|...           ...+..++++..++... ..+.+.+++.
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~  192 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY  192 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred             eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence            56666665 44 44557999999999999887766554433           34455555555544333 3455555555


Q ss_pred             CCCeee-eEecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCcCCcEEEEee--------------------------
Q psy15421        214 RDGSCK-QTFPGHESDINAVTFFPNGWAFATGSD-DATCRLFDIRADQELAMYS--------------------------  265 (340)
Q Consensus       214 ~~~~~~-~~~~~h~~~v~~v~~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~--------------------------  265 (340)
                      ...... ....++...+..++|+|++++++++.. +..+.+++..+.+.+....                          
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (426)
T d1hzua2         193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH  272 (426)
T ss_dssp             SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred             ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence            444321 223356777889999999988776654 4557777766544322110                          


Q ss_pred             --------------------------cCCcccceEEEEEcCCCcEEEE-------EeCCCcEEEEeCCCceeeeee----
Q psy15421        266 --------------------------HDNIICGITSVAFSRSGRLLLA-------GYDDFNCNVWDSMKTERAGIL----  308 (340)
Q Consensus       266 --------------------------~~~~~~~i~~~~~s~~~~~l~~-------g~~d~~i~iw~~~~~~~~~~~----  308 (340)
                                                ...+...+..++|+|++++|++       ++.+++|++||..+++...++    
T Consensus       273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~  352 (426)
T d1hzua2         273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA  352 (426)
T ss_dssp             TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred             CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccc
Confidence                                      0011234788999999999994       566889999999888765443    


Q ss_pred             -----ccCCcceEEEEECCCCCEE-EEe----eCCCcEEecC
Q psy15421        309 -----AGHDNRVSCLGVTEDGMAV-ATG----SWDSFLRIWN  340 (340)
Q Consensus       309 -----~~h~~~i~~~~~s~d~~~l-~s~----s~D~~i~iW~  340 (340)
                           ..|...|..++|||||+++ +|+    +.|+.|+|||
T Consensus       353 ~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D  394 (426)
T d1hzua2         353 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD  394 (426)
T ss_dssp             HHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred             hhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEE
Confidence                 3456779999999999876 443    4688899996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=2.2e-25  Score=199.22  Aligned_cols=273  Identities=10%  Similarity=0.059  Sum_probs=183.9

Q ss_pred             eeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeE--Eee---CCCCcEEEEEECCCCCEEEE-EeC
Q psy15421         44 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVH--AIP---LRSSWVMTCAYAPSGSFVAC-GGL  117 (340)
Q Consensus        44 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~---~~~~~i~~v~~~~~~~~l~~-~~~  117 (340)
                      ..+..++|..|. .+..++|+|||+++++++.|++|++||+.+++...  .++   .|...+.+++|+|||+++++ +..
T Consensus        51 t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~  129 (426)
T d1hzua2          51 SKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW  129 (426)
T ss_dssp             TCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred             CCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecC
Confidence            334567788774 58999999999999999999999999999887543  232   34445667788899998755 458


Q ss_pred             CCeEEEEEccCCCCceEEEEeecCCCcc-----------eEEEEEcCCC-eEE-EEeCCCeEEEEECCCCce-EEEEecC
Q psy15421        118 DNICSIYSLKTREGNVRVSRELPGHTGY-----------LSCCRFLDDN-QIV-TSSGDMSCALWDIETGQQ-CASFIGH  183 (340)
Q Consensus       118 d~~v~i~~~~~~~~~~~~~~~~~~~~~~-----------v~~~~~~~~~-~l~-~~~~d~~v~iwd~~~~~~-~~~~~~~  183 (340)
                      ++.+++||......    ......|...           ...+...+++ .++ +....+.+.+++...... ......+
T Consensus       130 ~~~v~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  205 (426)
T d1hzua2         130 PPQFAIMDGETLEP----KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA  205 (426)
T ss_dssp             SSEEEEEETTTCCE----EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEEC
T ss_pred             CCeEEEEcCCccce----eEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEecc
Confidence            89999999876532    2222222222           2223333332 222 233345555555544332 2233456


Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCe---------------------------------------------
Q psy15421        184 TGDVMSLSLAPDMRTFVSGA-CDASAKLWDIRDGS---------------------------------------------  217 (340)
Q Consensus       184 ~~~v~~~~~~~~~~~~~sg~-~dg~i~~wd~~~~~---------------------------------------------  217 (340)
                      ...+..+.++|++++++++. .+..+.+++..+++                                             
T Consensus       206 ~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~  285 (426)
T d1hzua2         206 APFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP  285 (426)
T ss_dssp             CSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCT
T ss_pred             CCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccc
Confidence            67788889999888766554 34555666654332                                             


Q ss_pred             ---------eeeEecCCCCCeEEEEEecCCCEEE-------EEeCCCcEEEEeCcCCcEEEEee-------cCCcccceE
Q psy15421        218 ---------CKQTFPGHESDINAVTFFPNGWAFA-------TGSDDATCRLFDIRADQELAMYS-------HDNIICGIT  274 (340)
Q Consensus       218 ---------~~~~~~~h~~~v~~v~~~~~~~~l~-------s~s~d~~i~iwd~~~~~~~~~~~-------~~~~~~~i~  274 (340)
                               ....+++|...+..++|+|++++++       +++.|++|++||+.+.+....+.       +......+.
T Consensus       286 ~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~  365 (426)
T d1hzua2         286 KNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVV  365 (426)
T ss_dssp             TTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEE
T ss_pred             cccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEE
Confidence                     2334556777889999999999999       45668999999998776544331       122334588


Q ss_pred             EEEEcCCCcEEEEE-----eCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEE
Q psy15421        275 SVAFSRSGRLLLAG-----YDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAV  327 (340)
Q Consensus       275 ~~~~s~~~~~l~~g-----~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l  327 (340)
                      .++|||||++++..     +.++.|++||..+.+....+.++.      .++|+|++-
T Consensus       366 ~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~  417 (426)
T d1hzua2         366 QPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN  417 (426)
T ss_dssp             EEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred             EEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence            99999999977442     467889999999999888887774      346777663

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=6.7e-24  Score=189.66  Aligned_cols=272  Identities=13%  Similarity=0.005  Sum_probs=192.5

Q ss_pred             CeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEE-EEeecCCCcce
Q psy15421         68 RNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV-SRELPGHTGYL  146 (340)
Q Consensus        68 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~~~~~v  146 (340)
                      -++++.+.||+|.|||..+++.+..++.+. .+..++|+|||+++++++.|+.+++||+.+++..... ......|...+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            346899999999999999999999998774 5899999999999999999999999999876533221 11222344445


Q ss_pred             EEEEEcCCC-eE-EEEeCCCeEEEEECCCCceEEEEec-----------CCCCeEEEEEcCCCCEE-EEEeCCCcEEEEE
Q psy15421        147 SCCRFLDDN-QI-VTSSGDMSCALWDIETGQQCASFIG-----------HTGDVMSLSLAPDMRTF-VSGACDASAKLWD  212 (340)
Q Consensus       147 ~~~~~~~~~-~l-~~~~~d~~v~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~-~sg~~dg~i~~wd  212 (340)
                      ....|++++ ++ +++..++.+++||..+++.+..+..           +......+.++|++..+ ++...++.|.+||
T Consensus       112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d  191 (432)
T d1qksa2         112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD  191 (432)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence            444556665 44 5677899999999999988776643           33456678899998865 5677789999999


Q ss_pred             CCCCeeeeEec-CCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCcCCcEEEEeecC-----------------------
Q psy15421        213 IRDGSCKQTFP-GHESDINAVTFFPNGWAFATGSD-DATCRLFDIRADQELAMYSHD-----------------------  267 (340)
Q Consensus       213 ~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~-----------------------  267 (340)
                      ..+.+...... .+...+..++|+|+|+++++++. +..+.++|....+........                       
T Consensus       192 ~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~  271 (432)
T d1qksa2         192 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT  271 (432)
T ss_dssp             TTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEE
T ss_pred             ccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecc
Confidence            98876543322 35567889999999998777765 456888887654433221100                       


Q ss_pred             -------------------CcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCce------------------------e
Q psy15421        268 -------------------NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTE------------------------R  304 (340)
Q Consensus       268 -------------------~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~------------------------~  304 (340)
                                         .+...+....++|++..+++++.+.+.++|......                        .
T Consensus       272 ~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~  351 (432)
T d1qksa2         272 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPE  351 (432)
T ss_dssp             EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCC
T ss_pred             cccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCc
Confidence                               011135566777777777777777666666532110                        0


Q ss_pred             e--------eeeccCCcceEEEEECCCCCEEEEee-----CCCcEEecC
Q psy15421        305 A--------GILAGHDNRVSCLGVTEDGMAVATGS-----WDSFLRIWN  340 (340)
Q Consensus       305 ~--------~~~~~h~~~i~~~~~s~d~~~l~s~s-----~D~~i~iW~  340 (340)
                      +        ..+..|...|..++|||||++|+.+.     .||.|+|||
T Consensus       352 ~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D  400 (432)
T d1qksa2         352 FKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  400 (432)
T ss_dssp             EEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             eEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence            0        12335677899999999999876543     468899996

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=6.1e-23  Score=176.06  Aligned_cols=261  Identities=15%  Similarity=0.067  Sum_probs=187.9

Q ss_pred             CeEEEEeCCCeEEEEeCCCCCeeEEeeCC--CCcEEEEEECCCCCEE-EEEeCCCeEEEEEccCCCCceEEEEeecCCC-
Q psy15421         68 RNLVSASQDGKLIVWDSYTTNKVHAIPLR--SSWVMTCAYAPSGSFV-ACGGLDNICSIYSLKTREGNVRVSRELPGHT-  143 (340)
Q Consensus        68 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~i~~v~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~-  143 (340)
                      .++++++.|++|++||+.+.+.+..++.+  ...+..++|+|||+++ ++++.++.|.+||+.+++.    ...+..+. 
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~----~~~~~~~~~   77 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET----LGRIDLSTP   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE----EEEEECCBT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE----EEEEecCCC
Confidence            47999999999999999999998888764  3456789999999987 5667899999999987642    22222222 


Q ss_pred             ----cceEEEEEcCCC-eEEEEe------------CCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q psy15421        144 ----GYLSCCRFLDDN-QIVTSS------------GDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDA  206 (340)
Q Consensus       144 ----~~v~~~~~~~~~-~l~~~~------------~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg  206 (340)
                          .....+.+++++ .++.+.            .+..+.+||..+++....+.. ...+..++++|+++++++++.  
T Consensus        78 ~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--  154 (337)
T d1pbyb_          78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--  154 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--
T ss_pred             cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC--
Confidence                223345666654 344433            567899999999887777654 456889999999999998764  


Q ss_pred             cEEEEECCCCeeeeEecCCCCCeEEEEEec------------------------CCCEEEEEeCCCcEEEEeCcCCcEEE
Q psy15421        207 SAKLWDIRDGSCKQTFPGHESDINAVTFFP------------------------NGWAFATGSDDATCRLFDIRADQELA  262 (340)
Q Consensus       207 ~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~------------------------~~~~l~s~s~d~~i~iwd~~~~~~~~  262 (340)
                      .+.+||..+++....++.+.... ...+.|                        +......++.++.+.+||...+....
T Consensus       155 ~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (337)
T d1pbyb_         155 DLHVMDPEAGTLVEDKPIQSWEA-ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM  233 (337)
T ss_dssp             SEEEEETTTTEEEEEECSTTTTT-TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE
T ss_pred             CcceeeeecCcEEEEeecCCccc-cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEE
Confidence            57889999988777665332110 011111                        11122223345568888888766443


Q ss_pred             EeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        263 MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       263 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .... .....+..+.++|++.+++.+  ++.+++||..+++.+..+ .+...+.+++|+|||++|++++.|++|+|||
T Consensus       234 ~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D  307 (337)
T d1pbyb_         234 REVR-IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEEE-ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             EEec-CCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEE-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            2211 122346788999999998776  478999999999888876 4677889999999999999999999999997

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=1e-20  Score=159.62  Aligned_cols=252  Identities=15%  Similarity=0.137  Sum_probs=189.9

Q ss_pred             EEeEEecCccCcEEEEEEcCCCCeE-EEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEE-EeCCCeEEE
Q psy15421         46 RTRRTLRGHLAKIYAMHWGSDSRNL-VSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVAC-GGLDNICSI  123 (340)
Q Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~-~~~d~~v~i  123 (340)
                      +..+++... .....++|+|||++| ++++.++.|++||+.+++.+..++.+.. +..+.|++++.++++ +..++.+.+
T Consensus        23 ~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  100 (301)
T d1l0qa2          23 KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSV  100 (301)
T ss_dssp             EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeee
Confidence            344455533 456899999999987 5677899999999999999888887765 578899999986655 556778999


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEcCCC-eE-EEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEE
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QI-VTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVS  201 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s  201 (340)
                      |+...+.    ....+..+. ...++.+.+++ .+ +++..+..+.+|+..+++....+..+ ..+..++++|++..+++
T Consensus       101 ~~~~~~~----~~~~~~~~~-~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  174 (301)
T d1l0qa2         101 IDTTSNT----VAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYV  174 (301)
T ss_dssp             EETTTTE----EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEE
T ss_pred             cccccce----eeeeccccc-cceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceee
Confidence            9986543    233333333 44556676665 44 45566889999999998877766544 45889999999998877


Q ss_pred             EeCC-CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeC---CCcEEEEeCcCCcEEEEeecCCcccceEEEE
Q psy15421        202 GACD-ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSD---DATCRLFDIRADQELAMYSHDNIICGITSVA  277 (340)
Q Consensus       202 g~~d-g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  277 (340)
                      +..+ +.+.+|+.........+..+ ..+..+++++++..++.++.   ++.|++||..+.+.+..+....   .+..++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va  250 (301)
T d1l0qa2         175 ANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIA  250 (301)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEE
T ss_pred             ecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEE
Confidence            7654 66778888777766666543 45778999999988765543   4679999999888777665432   478999


Q ss_pred             EcCCCcEE-EEEeCCCcEEEEeCCCceeeeeec
Q psy15421        278 FSRSGRLL-LAGYDDFNCNVWDSMKTERAGILA  309 (340)
Q Consensus       278 ~s~~~~~l-~~g~~d~~i~iw~~~~~~~~~~~~  309 (340)
                      |+|||++| ++++.|++|++||..+++.+.++.
T Consensus       251 ~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         251 VTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            99999987 577789999999999998887764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=7.9e-23  Score=175.99  Aligned_cols=271  Identities=12%  Similarity=0.029  Sum_probs=187.1

Q ss_pred             EEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeC-CCCcEEEEEECCCCCEEE-EEeCCCeEEEEEccCCCCceEEEEe
Q psy15421         61 MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPL-RSSWVMTCAYAPSGSFVA-CGGLDNICSIYSLKTREGNVRVSRE  138 (340)
Q Consensus        61 ~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~i~~v~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~  138 (340)
                      ++|++++++|++++.|++|.+||+.+++.+.+++. +...+..++|+|||++++ ++..++.|.+||+.+++.....  .
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~--~   79 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA--N   79 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--E
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee--c
Confidence            46889999999999999999999999998888874 445677999999999874 5567899999999765322111  1


Q ss_pred             ecC----CCcceEEEEEcCCCe-EEEEe------------CCCeEEEEECCCCceEEEEec--CCCCeEEEEEcCCCCEE
Q psy15421        139 LPG----HTGYLSCCRFLDDNQ-IVTSS------------GDMSCALWDIETGQQCASFIG--HTGDVMSLSLAPDMRTF  199 (340)
Q Consensus       139 ~~~----~~~~v~~~~~~~~~~-l~~~~------------~d~~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~  199 (340)
                      ...    +......+.+++++. ++.+.            .+..+.+|+..+++....+..  ....+..+.+++++..+
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEE
Confidence            111    111233456666654 43332            477899999988765443322  22345566677777766


Q ss_pred             EEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecC--------------------------CCEEEEEeCCCcEEEE
Q psy15421        200 VSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPN--------------------------GWAFATGSDDATCRLF  253 (340)
Q Consensus       200 ~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~--------------------------~~~l~s~s~d~~i~iw  253 (340)
                      ++   ++.+.+|++.+++....++.+.. ...+.++|+                          ...++++..+..+.+|
T Consensus       160 ~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         160 VA---GPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             EE---SSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             Ee---CCcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence            54   35689999998887776654321 122222232                          3334455566778888


Q ss_pred             eCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCC
Q psy15421        254 DIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWD  333 (340)
Q Consensus       254 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D  333 (340)
                      |.............. ...+..+.++|++.+++.+..+ .+.+||..+++.+..+. +...+.+++|||||++|++++.|
T Consensus       236 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d  312 (346)
T d1jmxb_         236 DLKTGKTHTQEFADL-TELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTF  312 (346)
T ss_dssp             ETTTCCEEEEEEEEC-SSCEEEEEECSSCTTEEEEEES-EEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBS
T ss_pred             ECCCCceEEEEeecc-cceeEEEEEeCCCCEEEEecCC-eEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCC
Confidence            887766544322111 2246788899998888877654 69999999988877664 55679999999999999999999


Q ss_pred             CcEEecC
Q psy15421        334 SFLRIWN  340 (340)
Q Consensus       334 ~~i~iW~  340 (340)
                      +.|+|||
T Consensus       313 ~~v~v~D  319 (346)
T d1jmxb_         313 NDLAVFN  319 (346)
T ss_dssp             SEEEEEE
T ss_pred             CcEEEEE
Confidence            9999997

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=3.1e-20  Score=165.64  Aligned_cols=266  Identities=13%  Similarity=0.021  Sum_probs=176.5

Q ss_pred             eeEEeEEecCccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCe--eEEee---CCCCcEEEEEECCCCCEE-EEEeC
Q psy15421         44 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNK--VHAIP---LRSSWVMTCAYAPSGSFV-ACGGL  117 (340)
Q Consensus        44 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~---~~~~~i~~v~~~~~~~~l-~~~~~  117 (340)
                      ..+..+++..| ..+..++|+|||+++++++.|+++++||+.+++.  ...++   .|...+.+..|+|||++| +++..
T Consensus        51 t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~  129 (432)
T d1qksa2          51 TYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW  129 (432)
T ss_dssp             TCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred             CCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCC
Confidence            33456677776 4699999999999999999999999999987763  33333   333445566788999986 67888


Q ss_pred             CCeEEEEEccCCCCceEEEEe-------ecCCCcceEEEEEcCCC-e-EEEEeCCCeEEEEECCCCceEEEE-ecCCCCe
Q psy15421        118 DNICSIYSLKTREGNVRVSRE-------LPGHTGYLSCCRFLDDN-Q-IVTSSGDMSCALWDIETGQQCASF-IGHTGDV  187 (340)
Q Consensus       118 d~~v~i~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~-~-l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~~v  187 (340)
                      ++.+++||..+++........       ...+......+.+++++ . +++...++.|.+||...++..... ..+...+
T Consensus       130 ~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~  209 (432)
T d1qksa2         130 PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFL  209 (432)
T ss_dssp             TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSE
T ss_pred             CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCcc
Confidence            999999998775422111100       01123344456666554 3 455667899999999887654433 2455668


Q ss_pred             EEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeeeEec-------------------------------------------
Q psy15421        188 MSLSLAPDMRTFVSGAC-DASAKLWDIRDGSCKQTFP-------------------------------------------  223 (340)
Q Consensus       188 ~~~~~~~~~~~~~sg~~-dg~i~~wd~~~~~~~~~~~-------------------------------------------  223 (340)
                      ..++|+|+++++++++. ++.+.++|.++++....+.                                           
T Consensus       210 ~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~  289 (432)
T d1qksa2         210 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH  289 (432)
T ss_dssp             EEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred             ccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccc
Confidence            89999999998777665 5678889987665432221                                           


Q ss_pred             -CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCc-------EEE-----------------Eee------cCCcccc
Q psy15421        224 -GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ-------ELA-----------------MYS------HDNIICG  272 (340)
Q Consensus       224 -~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~-------~~~-----------------~~~------~~~~~~~  272 (340)
                       .|...+....+.|++..+++++.+...++|+.....       .+.                 ...      .......
T Consensus       290 ~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~  369 (432)
T d1qksa2         290 PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPR  369 (432)
T ss_dssp             TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCE
T ss_pred             cccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccCCCCCc
Confidence             122235556666766667777777676666532210       000                 000      0011234


Q ss_pred             eEEEEEcCCCcEEEEEe-----CCCcEEEEeCCCceeeeeecc
Q psy15421        273 ITSVAFSRSGRLLLAGY-----DDFNCNVWDSMKTERAGILAG  310 (340)
Q Consensus       273 i~~~~~s~~~~~l~~g~-----~d~~i~iw~~~~~~~~~~~~~  310 (340)
                      +..++|+|||++++.+.     .++.|.|||..+.+....+.+
T Consensus       370 v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~  412 (432)
T d1qksa2         370 VVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD  412 (432)
T ss_dssp             EEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             EEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecC
Confidence            77899999999886653     568899999999988777655

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.87  E-value=7.1e-19  Score=153.16  Aligned_cols=277  Identities=13%  Similarity=0.003  Sum_probs=187.8

Q ss_pred             cCccCcEEEEEEcCCCCeEEEE-----eCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEe----------
Q psy15421         52 RGHLAKIYAMHWGSDSRNLVSA-----SQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGG----------  116 (340)
Q Consensus        52 ~~h~~~v~~~~~s~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~----------  116 (340)
                      .+|..++..++++||++.++..     +.++.|.+||..+++.+..+..+...  .++|+|||++++++.          
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            4678889999999999988754     23467999999999999888766543  689999999998875          


Q ss_pred             CCCeEEEEEccCCCCceEEEEeecCCCcce-------EEEEEcCCC-eEE--EEeCCCeEEEEECCCCceEEEEecCCCC
Q psy15421        117 LDNICSIYSLKTREGNVRVSRELPGHTGYL-------SCCRFLDDN-QIV--TSSGDMSCALWDIETGQQCASFIGHTGD  186 (340)
Q Consensus       117 ~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~-~l~--~~~~d~~v~iwd~~~~~~~~~~~~~~~~  186 (340)
                      .++.|.+||..+++.    ...+..+....       ..+.+.+++ .++  ....++.+.+|+....+...    +...
T Consensus        95 ~~~~v~v~D~~t~~~----~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~  166 (373)
T d2madh_          95 RTDYVEVFDPVTFLP----IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQ----LLSS  166 (373)
T ss_pred             cceEEEEEECCCCcE----EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEE----Eecc
Confidence            357899999987542    22222222222       123343333 222  22345677888877665433    3334


Q ss_pred             eEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeeeeEecCCC------CCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCc
Q psy15421        187 VMSLSLAPDMRT-FVSGACDASAKLWDIRDGSCKQTFPGHE------SDINAVTFFPNGWAFATGSDDATCRLFDIRADQ  259 (340)
Q Consensus       187 v~~~~~~~~~~~-~~sg~~dg~i~~wd~~~~~~~~~~~~h~------~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  259 (340)
                      ..++.++|+++. +++.+.|+.+.+|+...+........+.      .....+.+.+++ .++..+.++.+.+|+.....
T Consensus       167 ~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         167 PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAG  245 (373)
T ss_pred             ceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCe
Confidence            668889999875 4688899999999998877655443221      123345555555 45566678999999987654


Q ss_pred             EEEEeecCC----------cccceEEEEEcCCCcEE----------EEEeCCCcEEEEeCCCceeeeeeccCCcceEEEE
Q psy15421        260 ELAMYSHDN----------IICGITSVAFSRSGRLL----------LAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLG  319 (340)
Q Consensus       260 ~~~~~~~~~----------~~~~i~~~~~s~~~~~l----------~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~  319 (340)
                      .........          .......++++|++..+          +....++.+.+||..+++.+..+ .+...+..++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~-~~~~~~~~~a  324 (373)
T d2madh_         246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI-SLGHDVDAIS  324 (373)
T ss_pred             EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe-cCCCCeeEEE
Confidence            322111100          01123345666665544          44566678999999999888766 4677899999


Q ss_pred             ECCCCC--EEEEeeCCCcEEecC
Q psy15421        320 VTEDGM--AVATGSWDSFLRIWN  340 (340)
Q Consensus       320 ~s~d~~--~l~s~s~D~~i~iW~  340 (340)
                      |||||+  ++++++.|++|+|||
T Consensus       325 ~spDG~~~l~vt~~~d~~v~v~D  347 (373)
T d2madh_         325 VAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             ECCCCCEEEEEEeCCCCeEEEEE
Confidence            999998  457899999999997

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=3.1e-19  Score=152.57  Aligned_cols=258  Identities=13%  Similarity=0.093  Sum_probs=181.5

Q ss_pred             cccceeeEEeEEecC--ccCcEEEEEEcCCCCeE-EEEeCCCeEEEEeCCCCCeeEEeeCCCC-----cEEEEEECCCCC
Q psy15421         39 PIGRIQMRTRRTLRG--HLAKIYAMHWGSDSRNL-VSASQDGKLIVWDSYTTNKVHAIPLRSS-----WVMTCAYAPSGS  110 (340)
Q Consensus        39 ~~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~i~~v~~~~~~~  110 (340)
                      .++....+..+++..  +...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+..     .+..++|+|+++
T Consensus        15 v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~   94 (337)
T d1pbyb_          15 VIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK   94 (337)
T ss_dssp             EEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSS
T ss_pred             EEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCc
Confidence            333333344555543  44567899999999987 5667899999999999998887776543     234688999999


Q ss_pred             EEEEEeC------------CCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCe-EEEEeCCCeEEEEECCCCceE
Q psy15421        111 FVACGGL------------DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSSGDMSCALWDIETGQQC  177 (340)
Q Consensus       111 ~l~~~~~------------d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~  177 (340)
                      +++++..            +..+.+|+..++.    ....+.. ...+..+.+++++. +++++  +.+.+||..+++..
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~-~~~~~~~~~s~dg~~l~~~~--~~~~~~d~~~~~~~  167 (337)
T d1pbyb_          95 TLAIYESPVRLELTHFEVQPTRVALYDAETLS----RRKAFEA-PRQITMLAWARDGSKLYGLG--RDLHVMDPEAGTLV  167 (337)
T ss_dssp             EEEEEEEEEEECSSCEEECCCEEEEEETTTTE----EEEEEEC-CSSCCCEEECTTSSCEEEES--SSEEEEETTTTEEE
T ss_pred             EEEEeecCCcceeeeccccccceeeccccCCe----EEEeccc-cCCceEEEEcCCCCEEEEEc--CCcceeeeecCcEE
Confidence            9988764            5667788876543    2233332 33455667777764 55554  45778999988877


Q ss_pred             EEEecCCCCeEEEEEcCC------------------------CCEEEEEeCCCcEEEEECCCCeeee-EecCCCCCeEEE
Q psy15421        178 ASFIGHTGDVMSLSLAPD------------------------MRTFVSGACDASAKLWDIRDGSCKQ-TFPGHESDINAV  232 (340)
Q Consensus       178 ~~~~~~~~~v~~~~~~~~------------------------~~~~~sg~~dg~i~~wd~~~~~~~~-~~~~h~~~v~~v  232 (340)
                      ..+..+... ....+.|+                        ......+..++.+.+||+.++.... .+..+...+..+
T Consensus       168 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (337)
T d1pbyb_         168 EDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFST  246 (337)
T ss_dssp             EEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEE
T ss_pred             EEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEE
Confidence            665432211 11111111                        1112223445678899998887543 345677788889


Q ss_pred             EEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeec
Q psy15421        233 TFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA  309 (340)
Q Consensus       233 ~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~  309 (340)
                      .++|++.+++.+  ++.|++||+.+.+.+.......   .+.+++|+|||++|++|+.|++|++||..+.+.+..+.
T Consensus       247 ~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         247 AVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             EecccceEEEEc--cccEEEEECCCCcEEEEEcCCC---CEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            999999988766  5889999999988887765443   47899999999999999999999999999998887764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.1e-18  Score=149.25  Aligned_cols=271  Identities=11%  Similarity=0.138  Sum_probs=181.0

Q ss_pred             eEEEEeCCCeEEEEeCCCCCeeEEe--eCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEccCCCCceEEEEeecCCCcc
Q psy15421         69 NLVSASQDGKLIVWDSYTTNKVHAI--PLRSSWVMTCAYAPSGSFVACGG-LDNICSIYSLKTREGNVRVSRELPGHTGY  145 (340)
Q Consensus        69 ~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~i~~v~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~  145 (340)
                      .+++++.|++|++|++.+...+..+  -.+...+..++|+|||++|++++ .|+.|++|++.............. +...
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~-~~~~   84 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-LPGS   84 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-CSSC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc-cCCC
Confidence            4578889999999998755433322  25667789999999999996555 589999999976554443332222 2333


Q ss_pred             eEEEEEcCCC-eEEEEe-CCCeEEEEECCCCceEE--EEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeee
Q psy15421        146 LSCCRFLDDN-QIVTSS-GDMSCALWDIETGQQCA--SFIGHTGDVMSLSLAPDMRTFVSGA-CDASAKLWDIRDGSCKQ  220 (340)
Q Consensus       146 v~~~~~~~~~-~l~~~~-~d~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~sg~-~dg~i~~wd~~~~~~~~  220 (340)
                      ...+.+++++ .++.++ .++.+.+|+........  ....+...+.++.++|+++++++++ .+..|.+|+........
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~  164 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  164 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcce
Confidence            4557787776 455555 47789999987665433  3345666788999999999888766 45679999976643221


Q ss_pred             ------EecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCcCCcE----EEEeec----CCcccceEEEEEcCCCcEE
Q psy15421        221 ------TFPGHESDINAVTFFPNGWAFATGS-DDATCRLFDIRADQE----LAMYSH----DNIICGITSVAFSRSGRLL  285 (340)
Q Consensus       221 ------~~~~h~~~v~~v~~~~~~~~l~s~s-~d~~i~iwd~~~~~~----~~~~~~----~~~~~~i~~~~~s~~~~~l  285 (340)
                            ...........++|++++..++... ..+...+|+......    ......    .........++++|+++++
T Consensus       165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~  244 (333)
T d1ri6a_         165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL  244 (333)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred             eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce
Confidence                  1123445578899999988776554 556778887653221    111110    1112235678899999976


Q ss_pred             EEE-eCCCcEEEEeCCCceeeee---eccCCcceEEEEECCCCCEEEEe-eCCCcEEecC
Q psy15421        286 LAG-YDDFNCNVWDSMKTERAGI---LAGHDNRVSCLGVTEDGMAVATG-SWDSFLRIWN  340 (340)
Q Consensus       286 ~~g-~~d~~i~iw~~~~~~~~~~---~~~h~~~i~~~~~s~d~~~l~s~-s~D~~i~iW~  340 (340)
                      +.. ..++.+.+|+.........   ...+...+..++|||||++|+.+ +.+++|+||+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~  304 (333)
T d1ri6a_         245 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE  304 (333)
T ss_dssp             EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             eeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            654 5677899998654433222   23345667889999999986654 5678999983

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=8e-20  Score=156.89  Aligned_cols=265  Identities=14%  Similarity=0.042  Sum_probs=183.3

Q ss_pred             cccceeeEEeEEec-CccCcEEEEEEcCCCCeE-EEEeCCCeEEEEeCCCCCeeEEeeCCCC------cEEEEEECCCCC
Q psy15421         39 PIGRIQMRTRRTLR-GHLAKIYAMHWGSDSRNL-VSASQDGKLIVWDSYTTNKVHAIPLRSS------WVMTCAYAPSGS  110 (340)
Q Consensus        39 ~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~i~~v~~~~~~~  110 (340)
                      .++.-..+..++++ .|.....+++|+|||+++ ++++.++.|++||+.+++.+..+.....      .+..++|+|||+
T Consensus        22 v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~  101 (346)
T d1jmxb_          22 VVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK  101 (346)
T ss_dssp             EEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS
T ss_pred             EEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCC
Confidence            33333334556666 456678899999999986 5666899999999999988776654322      245688999999


Q ss_pred             EEEEEe------------CCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEE
Q psy15421        111 FVACGG------------LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCA  178 (340)
Q Consensus       111 ~l~~~~------------~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~  178 (340)
                      ++++++            .+..+.+|+..++.........  .....+....+.+++.++..+  ..+.+|++.+++.+.
T Consensus       102 ~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  177 (346)
T d1jmxb_         102 EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTV  177 (346)
T ss_dssp             EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEE
T ss_pred             EEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee--eccCceEEEEecCCCEEEEeC--CcceEEEccCCCEEE
Confidence            998775            3667788887664322111111  111223334455666665543  568899999888777


Q ss_pred             EEecCCCCeEEEEEcCCCC--------------------------EEEEEeCCCcEEEEECCCCeeee-EecCCCCCeEE
Q psy15421        179 SFIGHTGDVMSLSLAPDMR--------------------------TFVSGACDASAKLWDIRDGSCKQ-TFPGHESDINA  231 (340)
Q Consensus       179 ~~~~~~~~v~~~~~~~~~~--------------------------~~~sg~~dg~i~~wd~~~~~~~~-~~~~h~~~v~~  231 (340)
                      .+..+.. ...+.++|++.                          .+.++..++.+.+||+.++.... .+..|...+..
T Consensus       178 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (346)
T d1jmxb_         178 ALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT  256 (346)
T ss_dssp             EECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred             EEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEE
Confidence            6654322 22333334332                          23344556678888888776543 34567788889


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccC
Q psy15421        232 VTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGH  311 (340)
Q Consensus       232 v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h  311 (340)
                      +.+++++.+++... ++.|++||..+++.+..+....   .+.+++|+|||++|++|+.|+.|++||..+.+.+..+.-.
T Consensus       257 ~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~---~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         257 GLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             EEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCC---CEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence            99999888887766 4679999999888777665432   4789999999999999999999999999999998877643


Q ss_pred             C
Q psy15421        312 D  312 (340)
Q Consensus       312 ~  312 (340)
                      .
T Consensus       333 ~  333 (346)
T d1jmxb_         333 G  333 (346)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=1.8e-18  Score=149.32  Aligned_cols=272  Identities=14%  Similarity=0.031  Sum_probs=177.8

Q ss_pred             EEEEcCCCCeEEEEe-----CCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEe----------CCCeEEEE
Q psy15421         60 AMHWGSDSRNLVSAS-----QDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGG----------LDNICSIY  124 (340)
Q Consensus        60 ~~~~s~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~----------~d~~v~i~  124 (340)
                      -.+.+||++.++...     .+..|.+||..+++.+.+++.+..+  .++|+|||++|++.+          .++.|++|
T Consensus         6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~   83 (355)
T d2bbkh_           6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVF   83 (355)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEE
Confidence            345679999887653     4567999999999988888765543  689999999887643          47889999


Q ss_pred             EccCCCCceEEEEeecCCC----cceEEEEEcCCC-eEEEE--eCCCeEEEEECCCCceEEEEecCCC-------CeEEE
Q psy15421        125 SLKTREGNVRVSRELPGHT----GYLSCCRFLDDN-QIVTS--SGDMSCALWDIETGQQCASFIGHTG-------DVMSL  190 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~-~l~~~--~~d~~v~iwd~~~~~~~~~~~~~~~-------~v~~~  190 (340)
                      |..++.....+ .....+.    .....+.|++++ .++.+  +.+..+.+|+..+++....+..+..       ....+
T Consensus        84 D~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
T d2bbkh_          84 DPVTLLPTADI-ELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF  162 (355)
T ss_dssp             CTTTCCEEEEE-EETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEE
T ss_pred             ECCCCCEEEEE-ecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceE
Confidence            99875422111 1111111    112235666665 44444  3467899999999988776654332       12234


Q ss_pred             EEcCCCCEEEE-EeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEe--e-c
Q psy15421        191 SLAPDMRTFVS-GACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMY--S-H  266 (340)
Q Consensus       191 ~~~~~~~~~~s-g~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~-~  266 (340)
                      .++++++.++. ...++.+.+++.....     ..+...+....+.+++..++.++.++.+++|+..........  . +
T Consensus       163 ~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  237 (355)
T d2bbkh_         163 MHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL  237 (355)
T ss_dssp             EEETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESS
T ss_pred             EEcCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCc
Confidence            44555444332 2233344444433221     123344556678888889999999999999998866432211  0 0


Q ss_pred             C-------CcccceEEEEEcCCCcEEEEEeCC----------CcEEEEeCCCceeeeeeccCCcceEEEEECCCCC--EE
Q psy15421        267 D-------NIICGITSVAFSRSGRLLLAGYDD----------FNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGM--AV  327 (340)
Q Consensus       267 ~-------~~~~~i~~~~~s~~~~~l~~g~~d----------~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~--~l  327 (340)
                      .       ........++++|++..++....+          ..|.+||..+++.+..+. +...+.+++|||||+  ++
T Consensus       238 ~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~  316 (355)
T d2bbkh_         238 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLY  316 (355)
T ss_dssp             CHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEE
T ss_pred             ccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEE
Confidence            0       001123458899999988876554          369999999988877764 456789999999997  46


Q ss_pred             EEeeCCCcEEecC
Q psy15421        328 ATGSWDSFLRIWN  340 (340)
Q Consensus       328 ~s~s~D~~i~iW~  340 (340)
                      ++++.|++|+|||
T Consensus       317 v~~~~d~~i~v~D  329 (355)
T d2bbkh_         317 ALSTGDKTLYIHD  329 (355)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEECCCCEEEEEE
Confidence            7788899999997

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=1.3e-17  Score=143.88  Aligned_cols=265  Identities=13%  Similarity=0.067  Sum_probs=175.1

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEE----------eCCCeEEEEeCCCCCeeEEeeCCCC-------cEEEEEECCCCC
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSA----------SQDGKLIVWDSYTTNKVHAIPLRSS-------WVMTCAYAPSGS  110 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~----------~~d~~i~iwd~~~~~~~~~~~~~~~-------~i~~v~~~~~~~  110 (340)
                      ..++..+..+  .++|+||+++|+..          +.|+.|++||..+++.+..+..+..       ....++|+|+++
T Consensus        41 ~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  118 (355)
T d2bbkh_          41 IGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK  118 (355)
T ss_dssp             EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred             EEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCC
Confidence            3455554443  78999999988764          3478999999999998777654332       123578999999


Q ss_pred             EEEEEe--CCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEe------c
Q psy15421        111 FVACGG--LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFI------G  182 (340)
Q Consensus       111 ~l~~~~--~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~------~  182 (340)
                      +++.+.  .+..+.+|+..++.    ....+..+.....  ........++.+.|+...++............      .
T Consensus       119 ~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~  192 (355)
T d2bbkh_         119 TLLFYQFSPAPAVGVVDLEGKA----FKRMLDVPDCYHI--FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE  192 (355)
T ss_dssp             EEEEEECSSSCEEEEEETTTTE----EEEEEECCSEEEE--EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred             eeEEecCCCCceeeeeecCCCc----EeeEEecCCcceE--eecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce
Confidence            887764  45678899986643    2223332222111  11123344555666666665544333222211      2


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeee--EecCCC----------CCeEEEEEecCCCEEEEEeCC---
Q psy15421        183 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQ--TFPGHE----------SDINAVTFFPNGWAFATGSDD---  247 (340)
Q Consensus       183 ~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~--~~~~h~----------~~v~~v~~~~~~~~l~s~s~d---  247 (340)
                      +...+....+.+++..++.++.++.+.+|++..+....  ....+.          .....++++|++..++....+   
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~  272 (355)
T d2bbkh_         193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE  272 (355)
T ss_dssp             TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred             ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCc
Confidence            33345566778888889999999999999998775321  111111          122357889998877665443   


Q ss_pred             -------CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCc--EEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEE
Q psy15421        248 -------ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR--LLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCL  318 (340)
Q Consensus       248 -------~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~  318 (340)
                             ..|.+||..+.+.+..+...   ..+.+++|+|||+  +++++..|++|++||..+++.+..+.++...-..+
T Consensus       273 ~~~~~~~~~v~v~d~~t~~~~~~~~~~---~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i  349 (355)
T d2bbkh_         273 WRHKTASRFVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVI  349 (355)
T ss_dssp             TCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEE
T ss_pred             eeecCCCCeEEEEeCCCCcEEEEecCC---CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEE
Confidence                   36999999988877666543   2478899999998  45677889999999999999999887775555555


Q ss_pred             EECCC
Q psy15421        319 GVTED  323 (340)
Q Consensus       319 ~~s~d  323 (340)
                      .+.++
T Consensus       350 ~~~d~  354 (355)
T d2bbkh_         350 TTADM  354 (355)
T ss_dssp             ECCCC
T ss_pred             EeCCC
Confidence            55544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.81  E-value=2e-16  Score=137.34  Aligned_cols=262  Identities=10%  Similarity=0.026  Sum_probs=178.9

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEe----------CCCeEEEEeCCCCCeeEEeeCCCCcE-------EEEEECCCCC
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSAS----------QDGKLIVWDSYTTNKVHAIPLRSSWV-------MTCAYAPSGS  110 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~i-------~~v~~~~~~~  110 (340)
                      ..++.++..+  .++|+|||++|++++          .++.|.+||..+++.+..+..+....       ..+.|+++++
T Consensus        60 ~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  137 (373)
T d2madh_          60 LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA  137 (373)
T ss_pred             EEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCC
Confidence            3456665544  789999999998875          45789999999999888777665433       3467888888


Q ss_pred             EEEEEe--CCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC--eEEEEeCCCeEEEEECCCCceEEEEecCC--
Q psy15421        111 FVACGG--LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN--QIVTSSGDMSCALWDIETGQQCASFIGHT--  184 (340)
Q Consensus       111 ~l~~~~--~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--  184 (340)
                      .++...  .++.+.+|+.....    ...    +.....+..+.+++  .+++.+.|+.+.+|+...++.......+.  
T Consensus       138 ~~~v~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~  209 (373)
T d2madh_         138 DLLFFQFAAGPAVGLVVQGGSS----DDQ----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT  209 (373)
T ss_pred             cEEEEEEcCCCceEEeeccCCe----EEE----EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccc
Confidence            766554  34567777765432    111    12223344555443  46788899999999998877655443221  


Q ss_pred             ----CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeee--EecCCC----------CCeEEEEEecCCCE--------
Q psy15421        185 ----GDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQ--TFPGHE----------SDINAVTFFPNGWA--------  240 (340)
Q Consensus       185 ----~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~--~~~~h~----------~~v~~v~~~~~~~~--------  240 (340)
                          .....+.+.+++ .++..+.++.+.+|+...+....  .+..+.          .....++++|++..        
T Consensus       210 ~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  288 (373)
T d2madh_         210 AAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ  288 (373)
T ss_pred             cCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCC
Confidence                123344555555 44566789999999988765322  121111          12233455555543        


Q ss_pred             --EEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcE--EEEEeCCCcEEEEeCCCceeeeeeccCCcceE
Q psy15421        241 --FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRL--LLAGYDDFNCNVWDSMKTERAGILAGHDNRVS  316 (340)
Q Consensus       241 --l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~--l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~  316 (340)
                        +++...++.+.+||..+++.+..+.+.   ..+..++|+|||+.  +++++.|++|++||..+++.+..+.+|....+
T Consensus       289 ~~~~~~~~~~~v~~~d~~t~~~~~~~~~~---~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~  365 (373)
T d2madh_         289 SAWKLHAAAKEVTSVTGLVGQTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQ  365 (373)
T ss_pred             ceEEeecCCCeEEEEECCCCcEEEEecCC---CCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCc
Confidence              455666788999999988887766543   34789999999984  46789999999999999999999998888888


Q ss_pred             EEEECCC
Q psy15421        317 CLGVTED  323 (340)
Q Consensus       317 ~~~~s~d  323 (340)
                      .+++-++
T Consensus       366 ~l~~~~~  372 (373)
T d2madh_         366 VLSVMNE  372 (373)
T ss_pred             EEEEecC
Confidence            8877654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=8.5e-16  Score=130.88  Aligned_cols=251  Identities=12%  Similarity=0.151  Sum_probs=163.9

Q ss_pred             cCccCcEEEEEEcCCCCeEEEE-eCCCeEEEEeCCCCCeeEEe---eCCCCcEEEEEECCCCCEEEEEeC-CCeEEEEEc
Q psy15421         52 RGHLAKIYAMHWGSDSRNLVSA-SQDGKLIVWDSYTTNKVHAI---PLRSSWVMTCAYAPSGSFVACGGL-DNICSIYSL  126 (340)
Q Consensus        52 ~~h~~~v~~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~---~~~~~~i~~v~~~~~~~~l~~~~~-d~~v~i~~~  126 (340)
                      ..|.+.+..++|+|||++|+++ ..|+.|++|++.........   ..+...+..++|+|||++|++++. ++.+.+|+.
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence            3678899999999999998555 45899999998765433222   223344667999999999998875 668888887


Q ss_pred             cCCCCceEEEEeecCCCcceEEEEEcCCCe-EEEEe-CCCeEEEEECCCCceEEE------EecCCCCeEEEEEcCCCCE
Q psy15421        127 KTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSS-GDMSCALWDIETGQQCAS------FIGHTGDVMSLSLAPDMRT  198 (340)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~-~d~~v~iwd~~~~~~~~~------~~~~~~~v~~~~~~~~~~~  198 (340)
                      .....  ........+...+..+.+++++. ++.++ .+..+.+|+.........      .......+..++|++++..
T Consensus       113 ~~~~~--~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~  190 (333)
T d1ri6a_         113 EDGLP--VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY  190 (333)
T ss_dssp             ETTEE--EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred             ccccc--eecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecccee
Confidence            65432  22233344555566667776654 44444 467799999876543221      1224455788999999987


Q ss_pred             EEEE-eCCCcEEEEECCCCe----eeeEec------CCCCCeEEEEEecCCCEEE-EEeCCCcEEEEeCcCCcEE-EEee
Q psy15421        199 FVSG-ACDASAKLWDIRDGS----CKQTFP------GHESDINAVTFFPNGWAFA-TGSDDATCRLFDIRADQEL-AMYS  265 (340)
Q Consensus       199 ~~sg-~~dg~i~~wd~~~~~----~~~~~~------~h~~~v~~v~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~-~~~~  265 (340)
                      ++.. ...+...+|+.....    ....+.      ........+++++++++++ ++..++.+.+|++...... ....
T Consensus       191 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (333)
T d1ri6a_         191 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG  270 (333)
T ss_dssp             EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred             EEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEE
Confidence            7654 466778888765432    111111      1223466788999988655 4556788999988754322 2222


Q ss_pred             cCCcccceEEEEEcCCCcEEEEEe-CCCcEEEEe--CCCcee
Q psy15421        266 HDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWD--SMKTER  304 (340)
Q Consensus       266 ~~~~~~~i~~~~~s~~~~~l~~g~-~d~~i~iw~--~~~~~~  304 (340)
                      .......+..++|+|||++|++++ .++.|++|+  ..+++.
T Consensus       271 ~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         271 FQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            222223467889999999877665 568999994  455543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.66  E-value=2.5e-15  Score=131.26  Aligned_cols=262  Identities=15%  Similarity=0.150  Sum_probs=174.0

Q ss_pred             EEEEeCCCeEEEEeCCCCCeeEEeeC------------------------------CCCcEEEEEECCCCCEEEEEe-CC
Q psy15421         70 LVSASQDGKLIVWDSYTTNKVHAIPL------------------------------RSSWVMTCAYAPSGSFVACGG-LD  118 (340)
Q Consensus        70 l~s~~~d~~i~iwd~~~~~~~~~~~~------------------------------~~~~i~~v~~~~~~~~l~~~~-~d  118 (340)
                      ++|++.+|.|++|++.+.+.+..++.                              |.........+|||++|+... .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            66888999999999988877766543                              122234445678999986654 67


Q ss_pred             CeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCe--EEEEeCCCe------------------EEEEECCCCceEE
Q psy15421        119 NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ--IVTSSGDMS------------------CALWDIETGQQCA  178 (340)
Q Consensus       119 ~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~d~~------------------v~iwd~~~~~~~~  178 (340)
                      +.|.++|+.+.+...  ...+ .+......+.|.++++  ++++.....                  +..+|..+.+...
T Consensus        94 ~rVavIDl~t~k~~~--ii~i-P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~  170 (441)
T d1qnia2          94 TRVARIRLDIMKTDK--ITHI-PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW  170 (441)
T ss_dssp             TEEEEEETTTTEEEE--EEEC-TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred             CEEEEEECCCCcEee--EEec-CCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence            889999997754221  1122 2344566777875543  444433333                  3457888877666


Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEeCC-----------------------------------------CcEEEEECCCCe
Q psy15421        179 SFIGHTGDVMSLSLAPDMRTFVSGACD-----------------------------------------ASAKLWDIRDGS  217 (340)
Q Consensus       179 ~~~~~~~~v~~~~~~~~~~~~~sg~~d-----------------------------------------g~i~~wd~~~~~  217 (340)
                      .+... +.+..++++|+++++++.+.+                                         +.+.+++.....
T Consensus       171 qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~  249 (441)
T d1qnia2         171 QVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE  249 (441)
T ss_dssp             EEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS
T ss_pred             EEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc
Confidence            55433 457789999999988776543                                         344444444444


Q ss_pred             eeeEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEeCcCCcEE---------EEeecCCcccceEEEEEcCCCcEEEE
Q psy15421        218 CKQTFPGHESDINAVTFFPNGWAF-ATGSDDATCRLFDIRADQEL---------AMYSHDNIICGITSVAFSRSGRLLLA  287 (340)
Q Consensus       218 ~~~~~~~h~~~v~~v~~~~~~~~l-~s~s~d~~i~iwd~~~~~~~---------~~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
                      .+..++... ....++++|||+++ +++..++++.+||+.+.+..         .........-+..-.+|+++|..+.+
T Consensus       250 v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts  328 (441)
T d1qnia2         250 FTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTT  328 (441)
T ss_dssp             SEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEE
T ss_pred             eEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEc
Confidence            455555433 35679999999976 56788999999998642210         01111222223556789999999999


Q ss_pred             EeCCCcEEEEeCCC----------ceeeeee-----ccCCcceEEEEECCCCCEEEEe---eCCCcE
Q psy15421        288 GYDDFNCNVWDSMK----------TERAGIL-----AGHDNRVSCLGVTEDGMAVATG---SWDSFL  336 (340)
Q Consensus       288 g~~d~~i~iw~~~~----------~~~~~~~-----~~h~~~i~~~~~s~d~~~l~s~---s~D~~i  336 (340)
                      .+-|..|.-|+...          ......+     .||...+.+.+++|||++|+|+   |.|+.+
T Consensus       329 ~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~  395 (441)
T d1qnia2         329 LFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFL  395 (441)
T ss_dssp             ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSC
T ss_pred             ccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCc
Confidence            99999999999531          1122222     5888888899999999999999   666543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=4.9e-15  Score=128.62  Aligned_cols=251  Identities=11%  Similarity=-0.007  Sum_probs=163.8

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEe----------CCCeEEEEeCCCCCeeEEeeCCCC-------cEEEEEECCCCC
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSAS----------QDGKLIVWDSYTTNKVHAIPLRSS-------WVMTCAYAPSGS  110 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~-------~i~~v~~~~~~~  110 (340)
                      ..++.++...  .++|+||++.|+..+          .|++|++||..+++.+..+..+..       ....++|+|||+
T Consensus        59 ~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk  136 (368)
T d1mdah_          59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA  136 (368)
T ss_dssp             EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred             EEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCC
Confidence            3445555544  588999999988764          378899999999998877765432       123578999999


Q ss_pred             EEEEEe-CCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEE------ecC
Q psy15421        111 FVACGG-LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF------IGH  183 (340)
Q Consensus       111 ~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~------~~~  183 (340)
                      +++.+. .++.+.+||+..+.    ....++.+.....  .......++..+.|+.+.++++.........      ..+
T Consensus       137 ~l~va~~~~~~v~~~d~~~~~----~~~~~~~~~~~~~--~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~  210 (368)
T d1mdah_         137 CLLFFLFGSSAAAGLSVPGAS----DDQLTKSASCFHI--HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ  210 (368)
T ss_dssp             CEEEEECSSSCEEEEEETTTE----EEEEEECSSCCCC--EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS
T ss_pred             EEEEEeCCCCeEEEEECCCCc----EeEEeeccCcceE--ccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccc
Confidence            998775 57899999987653    2333333322211  1123445677788999999988655432221      223


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEe--cCC----------CCCeEEEEEecCCCEEEEEeCC----
Q psy15421        184 TGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTF--PGH----------ESDINAVTFFPNGWAFATGSDD----  247 (340)
Q Consensus       184 ~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~--~~h----------~~~v~~v~~~~~~~~l~s~s~d----  247 (340)
                      ...+..+.+.+++..+.+  ..+.+.++++..+......  ..+          ......++++|++..++....+    
T Consensus       211 ~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~  288 (368)
T d1mdah_         211 NCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS  288 (368)
T ss_dssp             CBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSC
T ss_pred             ccceeecccccCcEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCce
Confidence            334456677777765543  3566667776654432211  111          0112347888887766544322    


Q ss_pred             -----CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCc--EEEEEeCCCcEEEEeCCCceeeeeeccC
Q psy15421        248 -----ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR--LLLAGYDDFNCNVWDSMKTERAGILAGH  311 (340)
Q Consensus       248 -----~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~g~~d~~i~iw~~~~~~~~~~~~~h  311 (340)
                           ..|.+||..+++.+..+...   ..+..++|+|||+  +++++..|+.|++||..+++.+..+.-.
T Consensus       289 ~~~~~~~v~v~D~~t~~~~~~~~~~---~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         289 CLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             TTSCEEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             eecCCceEEEEECCCCcEeEEecCC---CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence                 35889999988877665433   2477899999997  3567778899999999999988877643

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=7.8e-15  Score=127.33  Aligned_cols=274  Identities=14%  Similarity=0.012  Sum_probs=173.9

Q ss_pred             cEEEEEEcCCCCeE---EEEeCCCe--EEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEe----------CCCeE
Q psy15421         57 KIYAMHWGSDSRNL---VSASQDGK--LIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGG----------LDNIC  121 (340)
Q Consensus        57 ~v~~~~~s~~~~~l---~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~----------~d~~v  121 (340)
                      +...++..++++..   ++...+++  +.+||..+++.+..+..+...  .++|+|||+++++++          .|+.|
T Consensus        21 ~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v   98 (368)
T d1mdah_          21 SSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYV   98 (368)
T ss_dssp             CCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEE
T ss_pred             CccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeE
Confidence            33444556677642   22344444  666699999888877766554  578999999888754          46789


Q ss_pred             EEEEccCCCCceEEEEeecCC-----CcceEEEEEcCCC-eEEEEe-CCCeEEEEECCCCceEEEEecCCCCeEEEEEcC
Q psy15421        122 SIYSLKTREGNVRVSRELPGH-----TGYLSCCRFLDDN-QIVTSS-GDMSCALWDIETGQQCASFIGHTGDVMSLSLAP  194 (340)
Q Consensus       122 ~i~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~-~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  194 (340)
                      ++||..+......+  ..+.+     ...-..+.|++++ .++.+. .++.+.+||+.+++....+..+.....   ...
T Consensus        99 ~v~D~~t~~~~~~i--~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~  173 (368)
T d1mdah_          99 EVFDPVTFLPIADI--ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPG  173 (368)
T ss_dssp             EEECTTTCCEEEEE--EETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEE
T ss_pred             EEEECCCCcEeeee--cCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccC
Confidence            99998765422211  12111     1111235677776 455444 579999999999988877765543321   112


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeeeeE------ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCC
Q psy15421        195 DMRTFVSGACDASAKLWDIRDGSCKQT------FPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDN  268 (340)
Q Consensus       195 ~~~~~~sg~~dg~i~~wd~~~~~~~~~------~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  268 (340)
                      ....++..+.||++.++++........      +..+...+..+.+.+++..+.+.  .+.+++++..............
T Consensus       174 ~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~  251 (368)
T d1mdah_         174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDG  251 (368)
T ss_dssp             ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCS
T ss_pred             CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeeccc
Confidence            244667778888888888765432211      22334445567778887766554  3556666665443332111100


Q ss_pred             ----------cccceEEEEEcCCCcEEEEEeCC---------CcEEEEeCCCceeeeeeccCCcceEEEEECCCCC--EE
Q psy15421        269 ----------IICGITSVAFSRSGRLLLAGYDD---------FNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGM--AV  327 (340)
Q Consensus       269 ----------~~~~i~~~~~s~~~~~l~~g~~d---------~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~--~l  327 (340)
                                .......++++|++..++....+         ..|.+||..+++.+..+. +...+..++|||||+  .+
T Consensus       252 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly  330 (368)
T d1mdah_         252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNY  330 (368)
T ss_dssp             SCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEE
T ss_pred             ccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEE
Confidence                      01123457889998877665433         358899999998887765 456789999999997  35


Q ss_pred             EEeeCCCcEEecC
Q psy15421        328 ATGSWDSFLRIWN  340 (340)
Q Consensus       328 ~s~s~D~~i~iW~  340 (340)
                      ++++.|+.|+|||
T Consensus       331 ~s~~~~~~v~v~D  343 (368)
T d1mdah_         331 ANSAGTEVLDIYD  343 (368)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEeCCCCeEEEEE
Confidence            6788899999997

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.55  E-value=3.2e-13  Score=120.93  Aligned_cols=146  Identities=12%  Similarity=0.086  Sum_probs=106.3

Q ss_pred             EEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEee-----CCCCcEEEEEECCCCCEEEEEeC---------CCeEEEE
Q psy15421         59 YAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP-----LRSSWVMTCAYAPSGSFVACGGL---------DNICSIY  124 (340)
Q Consensus        59 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~i~~v~~~~~~~~l~~~~~---------d~~v~i~  124 (340)
                      ..+.|.+++.++.  ..|+.+.+||+.+++....+.     .+...|.++.|||||++|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            4577889888765  457899999999998765444     33467899999999999998754         4567899


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEec------------------CCCC
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIG------------------HTGD  186 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~------------------~~~~  186 (340)
                      |+.++.     ...+..+...+....|++++..++-..++.+.+|+..+++.......                  ..+.
T Consensus        98 d~~~~~-----~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~  172 (470)
T d2bgra1          98 DLNKRQ-----LITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (470)
T ss_dssp             ETTTTE-----ECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             ECCCCc-----ccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCC
Confidence            987652     23456778888889999888655556788999999988876543221                  1223


Q ss_pred             eEEEEEcCCCCEEEEEeCCCc-EEEE
Q psy15421        187 VMSLSLAPDMRTFVSGACDAS-AKLW  211 (340)
Q Consensus       187 v~~~~~~~~~~~~~sg~~dg~-i~~w  211 (340)
                      ...+.|+||++.++....|.+ ++.|
T Consensus       173 ~~~~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         173 YSALWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred             ccccEECCCCCccceeEecCCcCceE
Confidence            456889999999988765533 4433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.32  E-value=1e-10  Score=101.79  Aligned_cols=184  Identities=11%  Similarity=-0.033  Sum_probs=120.0

Q ss_pred             CCCe-E-EEEeCCCeEEEEECCCCceEEEEe-cCCCCeEEEEEcCCCCEE-EEEeCCCcE------------------EE
Q psy15421        153 DDNQ-I-VTSSGDMSCALWDIETGQQCASFI-GHTGDVMSLSLAPDMRTF-VSGACDASA------------------KL  210 (340)
Q Consensus       153 ~~~~-l-~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~-~sg~~dg~i------------------~~  210 (340)
                      ++++ + ++...+..|.++|+.+++....+. .+...+..++|+|+++.+ +++..+..+                  ..
T Consensus        81 pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~  160 (441)
T d1qnia2          81 YDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA  160 (441)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEE
T ss_pred             CCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEe
Confidence            3443 4 344568899999999998877664 356678899999998843 333333333                  44


Q ss_pred             EECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCC-----------------------------------------Cc
Q psy15421        211 WDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDD-----------------------------------------AT  249 (340)
Q Consensus       211 wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d-----------------------------------------~~  249 (340)
                      +|..+.+....+... +....++++|+|+++++.+.+                                         +.
T Consensus       161 iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v  239 (441)
T d1qnia2         161 IDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKV  239 (441)
T ss_dssp             EETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred             ecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCc
Confidence            777776665555432 346778999999988777654                                         23


Q ss_pred             EEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEE-EEeCCCcEEEEeCCCceeee-eeccCCcc----------eEE
Q psy15421        250 CRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLL-AGYDDFNCNVWDSMKTERAG-ILAGHDNR----------VSC  317 (340)
Q Consensus       250 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~g~~d~~i~iw~~~~~~~~~-~~~~h~~~----------i~~  317 (340)
                      +.+++....+.+......   .....+.++|||++++ +|..+++|.+||..+.+... ....+...          ...
T Consensus       240 ~vvd~~~~~~v~~~IPvg---ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh  316 (441)
T d1qnia2         240 PVVDGRGESEFTRYIPVP---KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLH  316 (441)
T ss_dssp             CEEECSSSCSSEEEECCB---SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEE
T ss_pred             EEEEcccCCceEEEEeCC---CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccc
Confidence            333333333333333221   2356789999999875 56789999999976543210 00011111          233


Q ss_pred             EEECCCCCEEEEeeCCCcEEecC
Q psy15421        318 LGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       318 ~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .+|.++|..+.|.+.|++|..||
T Consensus       317 ~~fd~~g~~yts~~~ds~v~kw~  339 (441)
T d1qnia2         317 TTFDGRGNAYTTLFIDSQVCKWN  339 (441)
T ss_dssp             EEECSSSEEEEEETTTTEEEEEE
T ss_pred             ceecCCceEEEcccccceEEEec
Confidence            58999999999999999999996

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.31  E-value=5.4e-09  Score=87.35  Aligned_cols=231  Identities=12%  Similarity=0.043  Sum_probs=147.6

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEE
Q psy15421         57 KIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVS  136 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~  136 (340)
                      -+..++++|||+++++...+++|..|+....  ...+......+..++|+++|+++++...++.+..++.....+.....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            4788999999999999999999999986533  23344445678899999999998888777777666654332211111


Q ss_pred             EeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy15421        137 RELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG  216 (340)
Q Consensus       137 ~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~  216 (340)
                      ..                                .          ........+++.++++++++-+.++.+..+|...+
T Consensus       107 ~~--------------------------------~----------~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~  144 (302)
T d2p4oa1         107 LT--------------------------------L----------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP  144 (302)
T ss_dssp             EE--------------------------------C----------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             cc--------------------------------c----------CCccccceeEEccCCCEEeeccccccceeeeccCC
Confidence            00                                0          01123556667777777777777777777777665


Q ss_pred             eeeeEec----------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEE
Q psy15421        217 SCKQTFP----------GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLL  286 (340)
Q Consensus       217 ~~~~~~~----------~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  286 (340)
                      .......          ......+.+.++. +..+++.+..+.|..++..................+..++|+++|.+++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~v  223 (302)
T d2p4oa1         145 SGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG  223 (302)
T ss_dssp             EEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE
T ss_pred             cceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEE
Confidence            4321111          1123456777764 4466777788888888876543221111000112245689999999999


Q ss_pred             EEeCCCcEEEEeCCCcee--eeeeccCCcceEEEEE---CCCCCEEEEeeCC
Q psy15421        287 AGYDDFNCNVWDSMKTER--AGILAGHDNRVSCLGV---TEDGMAVATGSWD  333 (340)
Q Consensus       287 ~g~~d~~i~iw~~~~~~~--~~~~~~h~~~i~~~~~---s~d~~~l~s~s~D  333 (340)
                      +...++.|..++-. ++.  +..........++++|   ++|++.|..++..
T Consensus       224 a~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         224 ATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             ECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            88889999999743 433  2333334456789999   7788877655443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.30  E-value=1e-08  Score=84.61  Aligned_cols=231  Identities=16%  Similarity=0.206  Sum_probs=154.3

Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecC------CCcceEEEEEc-CCCe-EEE-EeCCCeEEEEE
Q psy15421        100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPG------HTGYLSCCRFL-DDNQ-IVT-SSGDMSCALWD  170 (340)
Q Consensus       100 i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~-~~~~-l~~-~~~d~~v~iwd  170 (340)
                      ...++++++++.+++-..++.|++|+..   +...  ..+..      ....-..+.+. ..+. ++. .+.++.|..++
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~---G~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE---GRFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT---SCEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC---CCEE--EEecccCCCcccccccccccccccccccceeccCCcccccccc
Confidence            4677888888877776667778888743   2211  11111      00011122222 2233 333 23456777777


Q ss_pred             CCCCceEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEe--cCCCCCeEEEEEecCCCEEEEEeCC
Q psy15421        171 IETGQQCASFI-GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTF--PGHESDINAVTFFPNGWAFATGSDD  247 (340)
Q Consensus       171 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s~s~d  247 (340)
                      .. ++....+. ........+++.+++.++++....+.+.+++. +++.+..+  ..+......+++.+++..+++....
T Consensus       100 ~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~  177 (279)
T d1q7fa_         100 QY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA  177 (279)
T ss_dssp             TT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             cc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccc
Confidence            64 45444443 24456789999999998888888888888885 45555554  3455678899999999999999989


Q ss_pred             CcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEe-CCCcEEEEeCCCceeeeeeccC--CcceEEEEECCCC
Q psy15421        248 ATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMKTERAGILAGH--DNRVSCLGVTEDG  324 (340)
Q Consensus       248 ~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~d~~i~iw~~~~~~~~~~~~~h--~~~i~~~~~s~d~  324 (340)
                      +.|++||.. ++.+..+...........+++.|+|+++++-. .+..|.+|+ .+++.+..+...  ......|++.|||
T Consensus       178 ~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG  255 (279)
T d1q7fa_         178 HCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDG  255 (279)
T ss_dssp             TEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred             cceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCC
Confidence            999999975 44555665444444578899999999888754 355799998 567766655433  3457889999999


Q ss_pred             CEEEEeeCCCcEEecC
Q psy15421        325 MAVATGSWDSFLRIWN  340 (340)
Q Consensus       325 ~~l~s~s~D~~i~iW~  340 (340)
                      .+++ ++.+.+|++|.
T Consensus       256 ~l~V-~~~n~~v~~fr  270 (279)
T d1q7fa_         256 SVVL-ASKDYRLYIYR  270 (279)
T ss_dssp             EEEE-EETTTEEEEEE
T ss_pred             cEEE-EeCCCeEEEEE
Confidence            7665 45789999873

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.26  E-value=1.5e-11  Score=109.76  Aligned_cols=142  Identities=15%  Similarity=0.112  Sum_probs=106.5

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEe-----cCCCCCeEEEEEecCCCEEEEEeC---------CCcEEEE
Q psy15421        188 MSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTF-----PGHESDINAVTFFPNGWAFATGSD---------DATCRLF  253 (340)
Q Consensus       188 ~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~-----~~h~~~v~~v~~~~~~~~l~s~s~---------d~~i~iw  253 (340)
                      ..+.|.+++++++.  .|+.+.+||+.+++....+     ..|...|.++.|+|||++|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            35778898887764  5889999999999876544     345678999999999999998753         5678899


Q ss_pred             eCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccC------------------Ccce
Q psy15421        254 DIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGH------------------DNRV  315 (340)
Q Consensus       254 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h------------------~~~i  315 (340)
                      |+.+++....   ......+..+.|||||+++|.. .++.+.+|+..+++.......+                  .+..
T Consensus        98 d~~~~~~~~l---~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~  173 (470)
T d2bgra1          98 DLNKRQLITE---ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (470)
T ss_dssp             ETTTTEECCS---SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             ECCCCccccc---ccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence            9998764332   2223458899999999999986 4568999998877655433222                  1234


Q ss_pred             EEEEECCCCCEEEEeeCCCc
Q psy15421        316 SCLGVTEDGMAVATGSWDSF  335 (340)
Q Consensus       316 ~~~~~s~d~~~l~s~s~D~~  335 (340)
                      ..+.|||||++|+..+.|.+
T Consensus       174 ~~~~wSPDGk~ia~~~~d~~  193 (470)
T d2bgra1         174 SALWWSPNGTFLAYAQFNDT  193 (470)
T ss_dssp             BCEEECTTSSEEEEEEEECT
T ss_pred             cccEECCCCCccceeEecCC
Confidence            56789999999999887654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=1.5e-08  Score=82.57  Aligned_cols=232  Identities=9%  Similarity=0.015  Sum_probs=143.8

Q ss_pred             EEEEEECCCCCEEEEE-eCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeC-CCeEEEEECCCCceE
Q psy15421        100 VMTCAYAPSGSFVACG-GLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSG-DMSCALWDIETGQQC  177 (340)
Q Consensus       100 i~~v~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~  177 (340)
                      ...++++++|+..++. +..+.+..++.....   .......+.. .-..+.+.+++.+..+.. .+.+++++..+....
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~---~~~~~~~~~~-~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~   91 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---TTVLPFNGLY-QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV   91 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC----C---EEECCCCSCC-SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCce---EEEeccCCcc-CceEEEEcCCCCEEEeeeeeceeeeeeeccceee
Confidence            5788999999976654 445666665543221   1111112111 122345555555444444 455555554444433


Q ss_pred             EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcC
Q psy15421        178 ASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRA  257 (340)
Q Consensus       178 ~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  257 (340)
                      ... .....+..+++.++++++++-..+..+..++............-.....+++++|++..+++...++.|..+|...
T Consensus        92 ~~~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~  170 (260)
T d1rwia_          92 LPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  170 (260)
T ss_dssp             CCC-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             eee-eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccc
Confidence            222 2234578999999999888777777788887654432221112223457899999999988888889999999875


Q ss_pred             CcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEE
Q psy15421        258 DQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLR  337 (340)
Q Consensus       258 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~  337 (340)
                      ..... ..... ......++++++|.++++...++.|..++...................++++++|..+++-..+.+|+
T Consensus       171 ~~~~~-~~~~~-~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~  248 (260)
T d1rwia_         171 NNQVV-LPFTD-ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV  248 (260)
T ss_dssp             CCEEE-CCCSS-CCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             ceeee-eeccc-cCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEE
Confidence            44332 22122 23467899999999999888888888887544332222223345678999999999888877777776


Q ss_pred             e
Q psy15421        338 I  338 (340)
Q Consensus       338 i  338 (340)
                      .
T Consensus       249 ~  249 (260)
T d1rwia_         249 K  249 (260)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.21  E-value=8.4e-09  Score=84.16  Aligned_cols=233  Identities=7%  Similarity=-0.019  Sum_probs=141.6

Q ss_pred             EEEEEcCCCCeEEEE-eCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEE
Q psy15421         59 YAMHWGSDSRNLVSA-SQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSR  137 (340)
Q Consensus        59 ~~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~  137 (340)
                      .+++++++|+..++. +..+.+..++...................++++++++++++....+.+++++-...  .  ...
T Consensus        17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~--~--~~~   92 (260)
T d1rwia_          17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN--Q--TVL   92 (260)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC--C--EEC
T ss_pred             CEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccc--e--eee
Confidence            789999999976654 45577777765443322221111223467889999998877666666655543221  1  111


Q ss_pred             eecCCCcceEEEEEcCCCeE-EEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy15421        138 ELPGHTGYLSCCRFLDDNQI-VTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG  216 (340)
Q Consensus       138 ~~~~~~~~v~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~  216 (340)
                      ... .......+.+.+++.+ ++-..+..+..++............-......+++.|+++.+++...++.|..+|....
T Consensus        93 ~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~  171 (260)
T d1rwia_          93 PFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  171 (260)
T ss_dssp             CCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             eee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccc
Confidence            111 1123345556555444 33344555666665443322111122335678999999998888888899999997754


Q ss_pred             eeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEE
Q psy15421        217 SCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNV  296 (340)
Q Consensus       217 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~i  296 (340)
                      ...............|+++++|..+++....+.|..++...... ..+.... ......++++++|.++++-..++.|+.
T Consensus       172 ~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~-~~~P~~i~~d~~g~l~vad~~~~rI~~  249 (260)
T d1rwia_         172 NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTG-LNTPLAVAVDSDRTVYVADRGNDRVVK  249 (260)
T ss_dssp             CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCS-CCCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred             eeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCC-CCCeEEEEEeCCCCEEEEECCCCEEEE
Confidence            43322223445678999999999988888888888887654322 2221111 234678999999998888777777776


Q ss_pred             Ee
Q psy15421        297 WD  298 (340)
Q Consensus       297 w~  298 (340)
                      ++
T Consensus       250 i~  251 (260)
T d1rwia_         250 LT  251 (260)
T ss_dssp             EC
T ss_pred             Ee
Confidence            65

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.18  E-value=1.7e-07  Score=76.95  Aligned_cols=238  Identities=13%  Similarity=0.149  Sum_probs=152.1

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCC------CCcEEEEEECCC-CCEEEEE-eCCCeEEEEEccC
Q psy15421         57 KIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLR------SSWVMTCAYAPS-GSFVACG-GLDNICSIYSLKT  128 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~i~~v~~~~~-~~~l~~~-~~d~~v~i~~~~~  128 (340)
                      .=..++++++++.+++-...+.|++||.. ++.+..+...      ......+++.++ +.++++. +.++.+..++.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            45799999999998888888999999964 5555544211      112344555444 3444433 344455555532 


Q ss_pred             CCCceEEEEeec-CCCcceEEEEEcCCCe-EEEEeCCCeEEEEECCCCceEEEEe--cCCCCeEEEEEcCCCCEEEEEeC
Q psy15421        129 REGNVRVSRELP-GHTGYLSCCRFLDDNQ-IVTSSGDMSCALWDIETGQQCASFI--GHTGDVMSLSLAPDMRTFVSGAC  204 (340)
Q Consensus       129 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~sg~~  204 (340)
                        +..  ...+. ........+...+++. +++....+.+.+++.. ++.+..+.  .+......+++.++++.+++...
T Consensus       102 --g~~--~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~  176 (279)
T d1q7fa_         102 --GQF--VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  176 (279)
T ss_dssp             --SCE--EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             --ccc--eeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecc
Confidence              221  22221 2222334445545544 4444556677777764 45555442  34556788999999998888888


Q ss_pred             CCcEEEEECCCCeeeeEec--CCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCC
Q psy15421        205 DASAKLWDIRDGSCKQTFP--GHESDINAVTFFPNGWAFATGSD-DATCRLFDIRADQELAMYSHDNIICGITSVAFSRS  281 (340)
Q Consensus       205 dg~i~~wd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  281 (340)
                      .+.|++||.. ++.+..+.  +.......|+++|+|..+++-.. ++.|.+|+.. ++.+..+...........+++.|+
T Consensus       177 ~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~d  254 (279)
T d1q7fa_         177 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDD  254 (279)
T ss_dssp             GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETT
T ss_pred             ccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEEEEeCCCCCCCEeEEEEeCC
Confidence            9999999964 56565552  34456789999999998877544 4579999854 555555543333334788999999


Q ss_pred             CcEEEEEeCCCcEEEEeCCCcee
Q psy15421        282 GRLLLAGYDDFNCNVWDSMKTER  304 (340)
Q Consensus       282 ~~~l~~g~~d~~i~iw~~~~~~~  304 (340)
                      |.++++ ..+..|++|......+
T Consensus       255 G~l~V~-~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         255 GSVVLA-SKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             TEEEEE-ETTTEEEEEECSCCCC
T ss_pred             CcEEEE-eCCCeEEEEEeeeecC
Confidence            986654 5788999998665543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.16  E-value=6e-08  Score=81.25  Aligned_cols=238  Identities=10%  Similarity=0.055  Sum_probs=143.8

Q ss_pred             cEEEEEEcCCCCeEEEEeC-------CCeEEEEeCCCCCeeEEeeCC----CCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15421         57 KIYAMHWGSDSRNLVSASQ-------DGKLIVWDSYTTNKVHAIPLR----SSWVMTCAYAPSGSFVACGGLDNICSIYS  125 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~s~~~-------d~~i~iwd~~~~~~~~~~~~~----~~~i~~v~~~~~~~~l~~~~~d~~v~i~~  125 (340)
                      ..-.++|.++|+++++...       ++.|..||..+++........    ......++|.++++.++++...+.+...+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            3466789999998876433       467889998877654332211    12356789999999888888777777777


Q ss_pred             ccCCCCceEEE-EeecCCC-cceEEEEEcCCCeEEEEeC----------------CCeEEEEECCCCceEEEEecCCCCe
Q psy15421        126 LKTREGNVRVS-RELPGHT-GYLSCCRFLDDNQIVTSSG----------------DMSCALWDIETGQQCASFIGHTGDV  187 (340)
Q Consensus       126 ~~~~~~~~~~~-~~~~~~~-~~v~~~~~~~~~~l~~~~~----------------d~~v~iwd~~~~~~~~~~~~~~~~v  187 (340)
                      .....  .... ....+.. ...+.+.+.+++.+..+..                ++.|..++.. ++. ..+...-...
T Consensus        99 ~~g~~--~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~-~~~~~~~~~p  174 (314)
T d1pjxa_          99 TDGTF--EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-IQVDTAFQFP  174 (314)
T ss_dssp             TTSCE--EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-EEEEEEESSE
T ss_pred             CCCcE--EEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-Cce-eEeeCCccee
Confidence            64321  1110 0011111 1123455655554433321                1234344432 232 2222233345


Q ss_pred             EEEEEcCCCC-----EEEEEeCCCcEEEEECCCC-ee-----eeEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q psy15421        188 MSLSLAPDMR-----TFVSGACDASAKLWDIRDG-SC-----KQTFPG-HESDINAVTFFPNGWAFATGSDDATCRLFDI  255 (340)
Q Consensus       188 ~~~~~~~~~~-----~~~sg~~dg~i~~wd~~~~-~~-----~~~~~~-h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  255 (340)
                      +.++|+|++.     ++++-+..+.|..||+... ..     ...+.+ +......+++.++|+.+++....+.|..||.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            7889988764     5556677899998887533 21     112222 1223567999999999988888899999998


Q ss_pred             cCCcEEEEeecCCcccceEEEEEcCCCcE-EEEEeCCCcEEEEeCC
Q psy15421        256 RADQELAMYSHDNIICGITSVAFSRSGRL-LLAGYDDFNCNVWDSM  300 (340)
Q Consensus       256 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~g~~d~~i~iw~~~  300 (340)
                      ..++.+..+....  ..+++++|.|+++. +++.+.++.|..++..
T Consensus       255 ~~g~~~~~i~~p~--~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         255 DGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCEEEEEEECCC--CCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            7665544443222  24789999999974 4556677888777753

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.16  E-value=4.6e-08  Score=81.97  Aligned_cols=237  Identities=13%  Similarity=0.090  Sum_probs=143.1

Q ss_pred             EEEEEECCCCCEEEEEeC-------CCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEEEEeCCCeEEEEEC
Q psy15421        100 VMTCAYAPSGSFVACGGL-------DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIVTSSGDMSCALWDI  171 (340)
Q Consensus       100 i~~v~~~~~~~~l~~~~~-------d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~v~iwd~  171 (340)
                      .-..+|.++|+++++...       ++.|..|+..++..............+.-..+.+.+++ .++.+.....+...+.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            345678899987776433       35566666654321111100011111123346676654 6777777777888888


Q ss_pred             CCCceEEEEecCCC----CeEEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCeeeeEecCCCCCeEEE
Q psy15421        172 ETGQQCASFIGHTG----DVMSLSLAPDMRTFVSGAC---------------DASAKLWDIRDGSCKQTFPGHESDINAV  232 (340)
Q Consensus       172 ~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~sg~~---------------dg~i~~wd~~~~~~~~~~~~h~~~v~~v  232 (340)
                      .............+    .++.+++.|++.++++-..               +|.|..++. .++..... ......+.+
T Consensus       100 ~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~-~~~~~pNGi  177 (314)
T d1pjxa_         100 DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVD-TAFQFPNGI  177 (314)
T ss_dssp             TSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEE-EEESSEEEE
T ss_pred             CCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEee-CCcceeeee
Confidence            76533221111111    2578999999988886432               234444443 23322222 223345789


Q ss_pred             EEecCCC-----EEEEEeCCCcEEEEeCcCCcEEEE---eec-C-CcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCc
Q psy15421        233 TFFPNGW-----AFATGSDDATCRLFDIRADQELAM---YSH-D-NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT  302 (340)
Q Consensus       233 ~~~~~~~-----~l~s~s~d~~i~iwd~~~~~~~~~---~~~-~-~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~  302 (340)
                      +|+|++.     .+++-+..+.|..||+.....+..   +.. . ......-.+++.++|+++++....+.|.+|+-..+
T Consensus       178 ~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g  257 (314)
T d1pjxa_         178 AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG  257 (314)
T ss_dssp             EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB
T ss_pred             EECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCC
Confidence            9998764     556667788899998764433321   111 1 11123557899999999998888899999997766


Q ss_pred             eeeeeeccCCcceEEEEECCCCC-EEEEeeCCCcEEe
Q psy15421        303 ERAGILAGHDNRVSCLGVTEDGM-AVATGSWDSFLRI  338 (340)
Q Consensus       303 ~~~~~~~~h~~~i~~~~~s~d~~-~l~s~s~D~~i~i  338 (340)
                      +.+..+.......++++|.||++ ++++.+.++.|..
T Consensus       258 ~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~  294 (314)
T d1pjxa_         258 QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEE
Confidence            66666665567789999999997 5567777777753

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.15  E-value=4.5e-07  Score=75.95  Aligned_cols=233  Identities=9%  Similarity=0.049  Sum_probs=144.9

Q ss_pred             CcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC--CeEEEEEccCCCCce
Q psy15421         56 AKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD--NICSIYSLKTREGNV  133 (340)
Q Consensus        56 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d--~~v~i~~~~~~~~~~  133 (340)
                      -.+..++|.++|++.++-...+.|+-||..+.+..............++++++|+++++...+  ....++.+.......
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            345789999999988888889999999987776555555555667899999999988775432  233344443322222


Q ss_pred             EEEEeecCCCcceEEEEEcCCCeEEEEeCC-------CeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEE-EEEeCC
Q psy15421        134 RVSRELPGHTGYLSCCRFLDDNQIVTSSGD-------MSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTF-VSGACD  205 (340)
Q Consensus       134 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d-------~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~sg~~d  205 (340)
                      ........-......+.+.+++.+..+...       +.+..++... +.+..+...-...+.++|+|+++.| ++-+..
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~  198 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNISVANGIALSTDEKVLWVTETTA  198 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeeccceeeeeeeccccceEEEecccC
Confidence            211111111223445566666655544322       2344444443 2333333333456789999999855 556678


Q ss_pred             CcEEEEECCCC-eeee----E---ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCC----cccce
Q psy15421        206 ASAKLWDIRDG-SCKQ----T---FPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDN----IICGI  273 (340)
Q Consensus       206 g~i~~wd~~~~-~~~~----~---~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~----~~~~i  273 (340)
                      +.|..||+... ....    .   ..........++++++|+.+++....+.|..||- .++.+..+....    ....+
T Consensus       199 ~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~  277 (319)
T d2dg1a1         199 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRS  277 (319)
T ss_dssp             TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBC
T ss_pred             CceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCcee
Confidence            99999987542 1111    1   1111223567999999999999999999999996 466665554322    12246


Q ss_pred             EEEEEcCCCcEEEEEeC
Q psy15421        274 TSVAFSRSGRLLLAGYD  290 (340)
Q Consensus       274 ~~~~~s~~~~~l~~g~~  290 (340)
                      ++++|.|++..+++...
T Consensus       278 ~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         278 THPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CEEEECTTSCEEEEEEE
T ss_pred             eeEEEeCCCCEEEEEcC
Confidence            79999998777665543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.14  E-value=6.5e-08  Score=82.86  Aligned_cols=240  Identities=10%  Similarity=0.089  Sum_probs=132.8

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEE-eecCCCcceEEEEEcCCCe--EEEEe--CCCeEEEEEC
Q psy15421         97 SSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSR-ELPGHTGYLSCCRFLDDNQ--IVTSS--GDMSCALWDI  171 (340)
Q Consensus        97 ~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~--l~~~~--~d~~v~iwd~  171 (340)
                      ...+.-++|+|++++|+++.. +.+..|.+....+...... ......   ..+.+.+++.  +++..  ..++|..+.+
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p---~~v~~~~~~~~~~v~~a~~~~~~v~~~~~  114 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHP---RANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSG---GGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCc---EEEEECCCCCEEEEEEecCCCCEEEEeEc
Confidence            334556889999999988765 4577787765332221111 111111   1122233433  22222  2344444433


Q ss_pred             CC-------------Cce---EEEEe-cCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-Ceee--eEe--cCCCCC
Q psy15421        172 ET-------------GQQ---CASFI-GHTGDVMSLSLAPDMRTFVSGA-CDASAKLWDIRD-GSCK--QTF--PGHESD  228 (340)
Q Consensus       172 ~~-------------~~~---~~~~~-~~~~~v~~~~~~~~~~~~~sg~-~dg~i~~wd~~~-~~~~--~~~--~~h~~~  228 (340)
                      ..             +..   ..... .....+.++.|+|++++++++. ....|.+|+... +...  ...  ......
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~g  194 (365)
T d1jofa_         115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH  194 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred             cCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCc
Confidence            21             111   11111 1222467999999999877765 356788887643 2221  111  223456


Q ss_pred             eEEEEEecCCCEEEE-EeCCCcEEEEeCcCCcEEEEe-----ecC------------CcccceEEEEEcCCCcEEEEEeC
Q psy15421        229 INAVTFFPNGWAFAT-GSDDATCRLFDIRADQELAMY-----SHD------------NIICGITSVAFSRSGRLLLAGYD  290 (340)
Q Consensus       229 v~~v~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~-----~~~------------~~~~~i~~~~~s~~~~~l~~g~~  290 (340)
                      ...++|+|+++++.. .-.++.|.+|++...+.....     ...            ........+.++|+|++|+++..
T Consensus       195 Pr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr  274 (365)
T d1jofa_         195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             eEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcc
Confidence            789999999997754 556888999998754322111     100            00112457899999999887642


Q ss_pred             -C-----CcEEEEeCCCceeee------eeccCCcceEEEEECC-CCCEEE-EeeCCCcEEecC
Q psy15421        291 -D-----FNCNVWDSMKTERAG------ILAGHDNRVSCLGVTE-DGMAVA-TGSWDSFLRIWN  340 (340)
Q Consensus       291 -d-----~~i~iw~~~~~~~~~------~~~~h~~~i~~~~~s~-d~~~l~-s~s~D~~i~iW~  340 (340)
                       +     ..|..|+......+.      ........-..++++| +|++|+ +...++.|.||+
T Consensus       275 ~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~  338 (365)
T d1jofa_         275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             cCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence             1     236666654321111      1112234456789998 888665 446779999984

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=1.1e-07  Score=77.26  Aligned_cols=222  Identities=12%  Similarity=0.114  Sum_probs=128.0

Q ss_pred             EEecCccCcEEEEEEcCCCCeEEEEeCCC---eEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCC-CeEEEE
Q psy15421         49 RTLRGHLAKIYAMHWGSDSRNLVSASQDG---KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD-NICSIY  124 (340)
Q Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d-~~v~i~  124 (340)
                      +.+..+...+..-+|||||+.||-.....   .+.+.+...+.. ..+..+........|+|+|+.++..... +...++
T Consensus        32 ~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~  110 (269)
T d2hqsa1          32 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  110 (269)
T ss_dssp             EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCcccee
Confidence            44555667788999999999998654432   355566655554 3344455667888999999988775533 222333


Q ss_pred             EccCCCCceEEEEeecCCCcceEEEEEcC-CC-eEEEEeCCC--eEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEE
Q psy15421        125 SLKTREGNVRVSRELPGHTGYLSCCRFLD-DN-QIVTSSGDM--SCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV  200 (340)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  200 (340)
                      ..........  . ............+.. .. .+++...++  .+...++..+.. ..............++|+++.++
T Consensus       111 ~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~  186 (269)
T d2hqsa1         111 VMDLASGQIR--Q-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMV  186 (269)
T ss_dssp             EEETTTCCEE--E-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEE
T ss_pred             ecccccccce--e-eeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeE
Confidence            3222222111  1 111122222222333 33 333444444  455666665533 23334555677889999999877


Q ss_pred             EEeC-CCcEEEE--ECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeC---CCcEEEEeCcCCcEEEEeecCCcccceE
Q psy15421        201 SGAC-DASAKLW--DIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSD---DATCRLFDIRADQELAMYSHDNIICGIT  274 (340)
Q Consensus       201 sg~~-dg~i~~w--d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~i~  274 (340)
                      ..+. .+...+|  +...+..  ....+........|+|||+.|+-.+.   ...|+++++...........   ...+.
T Consensus       187 ~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~---~g~~~  261 (269)
T d2hqsa1         187 MVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT---DGQVK  261 (269)
T ss_dssp             EEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS---SSEEE
T ss_pred             EEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCC---CCcEE
Confidence            6554 4455554  4444432  33334556678899999998874443   34688999887655433222   22466


Q ss_pred             EEEEcC
Q psy15421        275 SVAFSR  280 (340)
Q Consensus       275 ~~~~s~  280 (340)
                      ..+|||
T Consensus       262 ~p~WSP  267 (269)
T d2hqsa1         262 FPAWSP  267 (269)
T ss_dssp             EEEECC
T ss_pred             eEEeCC
Confidence            788998

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.02  E-value=2.7e-07  Score=78.88  Aligned_cols=247  Identities=8%  Similarity=-0.050  Sum_probs=139.0

Q ss_pred             ccCcEEEEEEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEe--eCCCCcEEEEEECCCCCE--EEEEe-CCCeEEEEEccC
Q psy15421         54 HLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAI--PLRSSWVMTCAYAPSGSF--VACGG-LDNICSIYSLKT  128 (340)
Q Consensus        54 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~i~~v~~~~~~~~--l~~~~-~d~~v~i~~~~~  128 (340)
                      +...+..|+|++++++|.++.. +.+..|.+.....+...  .........+.++++++.  ++++. ..+.+..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            4445667999999999887765 46777765432222111  111122334567888874  33332 234444444322


Q ss_pred             CCCceE-------------EEEeecCCCcceEEEEEcCCCe-EEEE-eCCCeEEEEECCCC-ceE--EEEe--cCCCCeE
Q psy15421        129 REGNVR-------------VSRELPGHTGYLSCCRFLDDNQ-IVTS-SGDMSCALWDIETG-QQC--ASFI--GHTGDVM  188 (340)
Q Consensus       129 ~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~-l~~~-~~d~~v~iwd~~~~-~~~--~~~~--~~~~~v~  188 (340)
                      ......             ...........+..+.|.++++ ++.+ .+...|.+|+.... ...  ....  .......
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence            111110             0011112223466788888775 4443 34567888876533 221  2222  2345688


Q ss_pred             EEEEcCCCCEEEE-EeCCCcEEEEECCCCeee--e---Eec--------------CCCCCeEEEEEecCCCEEEEEeC-C
Q psy15421        189 SLSLAPDMRTFVS-GACDASAKLWDIRDGSCK--Q---TFP--------------GHESDINAVTFFPNGWAFATGSD-D  247 (340)
Q Consensus       189 ~~~~~~~~~~~~s-g~~dg~i~~wd~~~~~~~--~---~~~--------------~h~~~v~~v~~~~~~~~l~s~s~-d  247 (340)
                      .++|+|++++++. ...+++|.+|++..+...  .   .+.              .+......+.++|+|++++++.. +
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~  276 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence            9999999998754 556899999998765422  1   111              01122457899999998877642 2


Q ss_pred             -----CcEEEEeCcCCcEEEE---e-ecCCcccceEEEEEcC-CCcEEEEE-eCCCcEEEEeCCC
Q psy15421        248 -----ATCRLFDIRADQELAM---Y-SHDNIICGITSVAFSR-SGRLLLAG-YDDFNCNVWDSMK  301 (340)
Q Consensus       248 -----~~i~iwd~~~~~~~~~---~-~~~~~~~~i~~~~~s~-~~~~l~~g-~~d~~i~iw~~~~  301 (340)
                           +.|..|++.....+..   + ...........++++| +|++|+++ ..++.|.+|+...
T Consensus       277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence                 2377777654322221   1 1111122356789998 79977665 5679999998543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=4.1e-06  Score=67.63  Aligned_cols=234  Identities=15%  Similarity=0.129  Sum_probs=128.3

Q ss_pred             eEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCC-eEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCe
Q psy15421         78 KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDN-ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ  156 (340)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~-~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  156 (340)
                      .|.|-|....+.. .+......+..-+|||||+.||...... ...+|......+...   .+..+........|++++.
T Consensus        20 ~l~i~d~dG~~~~-~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~   95 (269)
T d2hqsa1          20 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---QVASFPRHNGAPAFSPDGS   95 (269)
T ss_dssp             EEEEEETTSCSCE-EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---EEECCSSCEEEEEECTTSS
T ss_pred             EEEEEcCCCCCcE-EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee---EEeeeecccccceecCCCC
Confidence            4566665543333 3333345577889999999998765443 223333322222221   2223455556667777654


Q ss_pred             -EEEEeC-CCeEE--EEECCCCceEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcE--EEEECCCCeeeeEecCCCCCe
Q psy15421        157 -IVTSSG-DMSCA--LWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV-SGACDASA--KLWDIRDGSCKQTFPGHESDI  229 (340)
Q Consensus       157 -l~~~~~-d~~v~--iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-sg~~dg~i--~~wd~~~~~~~~~~~~h~~~v  229 (340)
                       ++.... ++...  .+...... ...............+++++..++ +...+|..  .+.++..+.. ..+..+....
T Consensus        96 ~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~  173 (269)
T d2hqsa1          96 KLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQN  173 (269)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEE
T ss_pred             eeeEeeecCCccceeeccccccc-ceeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccc
Confidence             443332 33322  23222222 222223333444556667666544 44455544  4455554432 3333455667


Q ss_pred             EEEEEecCCCEEEEEeCC-CcEEEE--eCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeC---CCcEEEEeCCCce
Q psy15421        230 NAVTFFPNGWAFATGSDD-ATCRLF--DIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYD---DFNCNVWDSMKTE  303 (340)
Q Consensus       230 ~~v~~~~~~~~l~s~s~d-~~i~iw--d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~---d~~i~iw~~~~~~  303 (340)
                      ....|+|++..++..+.+ +...+|  +...... ......   .......|+|||+.|+-.+.   ...+.++++....
T Consensus       174 ~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~---~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~  249 (269)
T d2hqsa1         174 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF  249 (269)
T ss_dssp             EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             cccccccccceeEEEeecCCceeeeEeecccccc-eEeecC---ccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            778999999988776554 344444  4443332 222111   23467789999999875443   3467888876554


Q ss_pred             eeeeeccCCcceEEEEECC
Q psy15421        304 RAGILAGHDNRVSCLGVTE  322 (340)
Q Consensus       304 ~~~~~~~h~~~i~~~~~s~  322 (340)
                       ...+....+.+...+|||
T Consensus       250 -~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         250 -KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             -EEECCCSSSEEEEEEECC
T ss_pred             -EEEEeCCCCcEEeEEeCC
Confidence             445666677888899998

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.94  E-value=7e-06  Score=68.47  Aligned_cols=227  Identities=10%  Similarity=0.019  Sum_probs=136.2

Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEe-C----CCeEEEEECCCC
Q psy15421        100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSS-G----DMSCALWDIETG  174 (340)
Q Consensus       100 i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~----d~~v~iwd~~~~  174 (340)
                      +-.++|.++|++.++-...+.|..|+...+.    ..............+.+.+++.++.+. .    .+.+...+....
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~----~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKE----IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCC----EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCe----EEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            3467788888876666677777666654322    111122223344567777776655443 2    233555555554


Q ss_pred             ceEEEEec--CCCCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEE-EEEe
Q psy15421        175 QQCASFIG--HTGDVMSLSLAPDMRTFVSGAC------DASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF-ATGS  245 (340)
Q Consensus       175 ~~~~~~~~--~~~~v~~~~~~~~~~~~~sg~~------dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~s  245 (340)
                      ........  -...+..+++.|+++++++...      .+.+..++...+. +..+...-...+.++|+|+++.| ++-+
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEecc
Confidence            43332221  1234778999999987776432      1335555544332 22222223346889999998754 6666


Q ss_pred             CCCcEEEEeCcCCc-EEEE----ee-cCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeec------cCCc
Q psy15421        246 DDATCRLFDIRADQ-ELAM----YS-HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA------GHDN  313 (340)
Q Consensus       246 ~d~~i~iwd~~~~~-~~~~----~~-~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~------~h~~  313 (340)
                      ..+.|..|++.... ....    .. ........-.+++.++|++.++...++.|.+|+ ..++.+..+.      ++..
T Consensus       197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P~~~~~~~~  275 (319)
T d2dg1a1         197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQILIPGRDEGHML  275 (319)
T ss_dssp             GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEECTTGGGTCSC
T ss_pred             cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEeCCCcCCCcCc
Confidence            78899999876321 1111    00 111112256789999999999999999999999 4677665542      4455


Q ss_pred             ceEEEEECCCCCEEEEeeC
Q psy15421        314 RVSCLGVTEDGMAVATGSW  332 (340)
Q Consensus       314 ~i~~~~~s~d~~~l~s~s~  332 (340)
                      .+++++|.+++..++..+.
T Consensus       276 ~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         276 RSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             BCCEEEECTTSCEEEEEEE
T ss_pred             eeeeEEEeCCCCEEEEEcC
Confidence            7889999998876665443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.78  E-value=2.8e-06  Score=70.34  Aligned_cols=193  Identities=10%  Similarity=0.033  Sum_probs=128.8

Q ss_pred             ceEEEEEcCCCe-EEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eeeE
Q psy15421        145 YLSCCRFLDDNQ-IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS--CKQT  221 (340)
Q Consensus       145 ~v~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~--~~~~  221 (340)
                      ++..+.+.+++. +++...+++|..++....  ...+......+.+++|.|+++++++...++.+..|+.....  ....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            455667777765 455566888888886543  34455566789999999999999999899999888764332  2111


Q ss_pred             e-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecC--------CcccceEEEEEcCCCcEEEEEeCCC
Q psy15421        222 F-PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHD--------NIICGITSVAFSRSGRLLLAGYDDF  292 (340)
Q Consensus       222 ~-~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--------~~~~~i~~~~~s~~~~~l~~g~~d~  292 (340)
                      . .......+.+++.+++.++++-+.++.+..+|.............        ........+.++. +.++++.+.++
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~  185 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM  185 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence            1 223456889999999999999888999988888765432211110        1112245566654 35566677788


Q ss_pred             cEEEEeCCCceeeee--eccCCcceEEEEECCCCCEEEEeeCCCcEEecC
Q psy15421        293 NCNVWDSMKTERAGI--LAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN  340 (340)
Q Consensus       293 ~i~iw~~~~~~~~~~--~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~iW~  340 (340)
                      .|..++.........  ...+......+++.+||+++++...++.|..++
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~  235 (302)
T d2p4oa1         186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIA  235 (302)
T ss_dssp             EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             eEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEEC
Confidence            888887654322221  112234456799999999888888888887763

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.61  E-value=8.5e-05  Score=60.87  Aligned_cols=216  Identities=14%  Similarity=0.150  Sum_probs=133.9

Q ss_pred             EECCC-CCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEec
Q psy15421        104 AYAPS-GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIG  182 (340)
Q Consensus       104 ~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~  182 (340)
                      .|.+. +.+..+--..+.|..|+..++.  .. ...++   ..+.++.+.+++.++.++.+ -+..+|..+++...-...
T Consensus        24 ~wd~~~~~l~wvDi~~~~I~r~d~~~g~--~~-~~~~~---~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          24 TFDPASGTAWWFNILERELHELHLASGR--KT-VHALP---FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTTTE--EE-EEECS---SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECS
T ss_pred             eEECCCCEEEEEECCCCEEEEEECCCCe--EE-EEECC---CCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeee
Confidence            35543 3333333355667777765432  11 12222   34455666667777666654 588999988865322211


Q ss_pred             -C---CCCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEE
Q psy15421        183 -H---TGDVMSLSLAPDMRTFVSGAC----DASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF-ATGSDDATCRLF  253 (340)
Q Consensus       183 -~---~~~v~~~~~~~~~~~~~sg~~----dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~s~d~~i~iw  253 (340)
                       .   ...++.+.+.|++++.++...    .+.-.+|.+..++....... -...+.++|+++++.+ ++-+..+.|..+
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~  175 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRV  175 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEe
Confidence             1   124788999999998776442    23456777667765544432 2346889999998754 566667889888


Q ss_pred             eCcCC------cEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccCCcceEEEEEC-CCCCE
Q psy15421        254 DIRAD------QELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVT-EDGMA  326 (340)
Q Consensus       254 d~~~~------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s-~d~~~  326 (340)
                      ++...      +..............-.+++.++|++.++....+.|..|+ ..++.+..+.--...+++++|- ||.+.
T Consensus       176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~~~  254 (295)
T d2ghsa1         176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPDASR  254 (295)
T ss_dssp             EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTTSCE
T ss_pred             eecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCCCCCE
Confidence            86422      1111111122223467889999999998888889999999 5677777665434678999995 67654


Q ss_pred             EE
Q psy15421        327 VA  328 (340)
Q Consensus       327 l~  328 (340)
                      |.
T Consensus       255 Ly  256 (295)
T d2ghsa1         255 LL  256 (295)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.7e-05  Score=69.71  Aligned_cols=221  Identities=13%  Similarity=0.095  Sum_probs=126.1

Q ss_pred             EEcCCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCC---CCcEEEEEECCCCCEEEEEeC---------CCeEEEEEccCC
Q psy15421         62 HWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLR---SSWVMTCAYAPSGSFVACGGL---------DNICSIYSLKTR  129 (340)
Q Consensus        62 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~i~~v~~~~~~~~l~~~~~---------d~~v~i~~~~~~  129 (340)
                      .|.+++.++. -..+|.|.+||+.+++....+...   ...+....+|||+++++....         .+...++|+.++
T Consensus        23 ~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            5777877654 356789999999887754333322   234567789999999877642         456778888765


Q ss_pred             CCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEECCCCceEEEEec-CC-----------------CCeEEEE
Q psy15421        130 EGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIG-HT-----------------GDVMSLS  191 (340)
Q Consensus       130 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~-----------------~~v~~~~  191 (340)
                      ...  ...........+....|++++.-++-..++.+.+.+..++...+.... ..                 +.-..+-
T Consensus       102 ~~~--~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         102 DPQ--SLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             CCE--ECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             cee--eccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            421  121122233344456677776544444577888888877655443321 11                 1124778


Q ss_pred             EcCCCCEEEEEeC-CCcEEEEE---------------------------------CCCCeeeeEe-c-----CCCCCeEE
Q psy15421        192 LAPDMRTFVSGAC-DASAKLWD---------------------------------IRDGSCKQTF-P-----GHESDINA  231 (340)
Q Consensus       192 ~~~~~~~~~sg~~-dg~i~~wd---------------------------------~~~~~~~~~~-~-----~h~~~v~~  231 (340)
                      |+|||+.|+.... +..|..+.                                 +..+...... +     ....-+..
T Consensus       180 WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~  259 (465)
T d1xfda1         180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM  259 (465)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred             ECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeee
Confidence            9999999887553 34444443                                 2222111000 0     01112567


Q ss_pred             EEEecCCCEEEEEeC-C---CcEEEEeCcCCcEEEEeec--CCccc-ceEEEEEcCCCcEE
Q psy15421        232 VTFFPNGWAFATGSD-D---ATCRLFDIRADQELAMYSH--DNIIC-GITSVAFSRSGRLL  285 (340)
Q Consensus       232 v~~~~~~~~l~s~s~-d---~~i~iwd~~~~~~~~~~~~--~~~~~-~i~~~~~s~~~~~l  285 (340)
                      +.|.|+++.++.... +   ..+.++|..+++.......  ..... .-....|+|+|+.+
T Consensus       260 ~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred             eEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence            889999876655432 2   2477888887765443321  11110 11245789999843

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.38  E-value=0.00035  Score=57.05  Aligned_cols=220  Identities=11%  Similarity=0.041  Sum_probs=136.4

Q ss_pred             EEEEEcC-CCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEE
Q psy15421         59 YAMHWGS-DSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSR  137 (340)
Q Consensus        59 ~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~  137 (340)
                      -+..|++ ++.+..+--..+.|.-||..+++.. .+.. ...+.++++.+++.++++ +.+ -+..+|..+++  .....
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~-~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~--~~~l~   94 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGV--LTLHA   94 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCC--EEEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC-CCCcEEEEEecCCCEEEE-EeC-ccEEeecccce--eeEEe
Confidence            3456776 4555566557789999998877543 2322 345788889899888775 444 46778876543  22222


Q ss_pred             eecCC--CcceEEEEEcCCCeEEEEeC-----CCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEE
Q psy15421        138 ELPGH--TGYLSCCRFLDDNQIVTSSG-----DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTF-VSGACDASAK  209 (340)
Q Consensus       138 ~~~~~--~~~v~~~~~~~~~~l~~~~~-----d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~sg~~dg~i~  209 (340)
                      .....  ....+.....+++.+..+..     .+.-.+|.+..++...... .-...+.++++++++.+ ++-+..+.|.
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~  173 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLM  173 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceee
Confidence            22221  12345555556665544432     2345567666665433333 23346789999999855 4666788998


Q ss_pred             EEECCCCe--------eeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEc-C
Q psy15421        210 LWDIRDGS--------CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS-R  280 (340)
Q Consensus       210 ~wd~~~~~--------~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s-~  280 (340)
                      .+++....        ....+.+..+....++++++|.+.++.-..+.|..||-. ++.+..+..+..  .+++++|- |
T Consensus       174 ~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~~~~i~lP~~--~~T~~~FGG~  250 (295)
T d2ghsa1         174 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGK--QTTCPAFIGP  250 (295)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCS--BEEEEEEEST
T ss_pred             EeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcEeeEecCCCC--ceEEEEEeCC
Confidence            88864211        111223344557789999999988888778899999964 566665544322  38899995 6


Q ss_pred             CCcEEEEE
Q psy15421        281 SGRLLLAG  288 (340)
Q Consensus       281 ~~~~l~~g  288 (340)
                      +.+.|.+.
T Consensus       251 d~~~LyvT  258 (295)
T d2ghsa1         251 DASRLLVT  258 (295)
T ss_dssp             TSCEEEEE
T ss_pred             CCCEEEEE
Confidence            76655543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.9e-06  Score=74.73  Aligned_cols=142  Identities=10%  Similarity=0.115  Sum_probs=92.7

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCC---CCCeEEEEEecCCCEEEEEe---------CCCcEEEEeCcC
Q psy15421        190 LSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGH---ESDINAVTFFPNGWAFATGS---------DDATCRLFDIRA  257 (340)
Q Consensus       190 ~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h---~~~v~~v~~~~~~~~l~s~s---------~d~~i~iwd~~~  257 (340)
                      ..|.+++.+++. ..+|.|.+||+.+++....+...   ...+....|+||+++++...         ..+.+.++|+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            357777766543 46789999999887654333322   23566788999999887653         357788999987


Q ss_pred             CcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeee-ccCCcce-----------------EEEE
Q psy15421        258 DQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGIL-AGHDNRV-----------------SCLG  319 (340)
Q Consensus       258 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~-~~h~~~i-----------------~~~~  319 (340)
                      +..............+....|||||+.||-.. ++.+.+.+...++..... .+-.+.|                 ..+-
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            65443322222223355679999999998865 456888876655443322 1211111                 4677


Q ss_pred             ECCCCCEEEEeeCC
Q psy15421        320 VTEDGMAVATGSWD  333 (340)
Q Consensus       320 ~s~d~~~l~s~s~D  333 (340)
                      |||||++||....|
T Consensus       180 WSPDgk~iaf~~~D  193 (465)
T d1xfda1         180 WSPDGTRLAYAAIN  193 (465)
T ss_dssp             ECTTSSEEEEEEEE
T ss_pred             ECCCCCeEEEEEec
Confidence            99999999987654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.20  E-value=0.00067  Score=54.21  Aligned_cols=232  Identities=11%  Similarity=0.116  Sum_probs=112.0

Q ss_pred             EcCC--CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEccCCCCceEEE
Q psy15421         63 WGSD--SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGL----DNICSIYSLKTREGNVRVS  136 (340)
Q Consensus        63 ~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~----d~~v~i~~~~~~~~~~~~~  136 (340)
                      .+||  |+.++-.+ ++.|.+.|+.+++.. .+..+...+...+|||||+.||....    +....+|-+....+.....
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            4688  88877554 456778899877754 44445566788899999999886532    2233445444333322211


Q ss_pred             Eee----cCCCcceEEEEEcCCCeEEEEe-C------CCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q psy15421        137 REL----PGHTGYLSCCRFLDDNQIVTSS-G------DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD  205 (340)
Q Consensus       137 ~~~----~~~~~~v~~~~~~~~~~l~~~~-~------d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d  205 (340)
                      ...    ...........|++++..+... .      ...+...+...+....   .+........+.+++..++....+
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  160 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP---LNLGPATHILFADGRRVIGRNTFE  160 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE---CCSCSCSEEEEETTEEEEEESCSC
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE---ecCCccceeeecCCCeEEEeeccc
Confidence            110    1112233455677666433322 1      1224455554443221   122222233333333333332221


Q ss_pred             C-----------cEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCC--CcEEEEeCcCCcEEEEeecCCcccc
Q psy15421        206 A-----------SAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDD--ATCRLFDIRADQELAMYSHDNIICG  272 (340)
Q Consensus       206 g-----------~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d--~~i~iwd~~~~~~~~~~~~~~~~~~  272 (340)
                      .           ................ ..........+.++. .+.....+  ..|.++|+.+...........    
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~----  234 (281)
T d1k32a2         161 LPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRKHTSFTD----  234 (281)
T ss_dssp             CTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEECCCCCS----
T ss_pred             cceeeeeccCCcceeeeeccccceeecc-CCccccceeeeeccc-cceecccccccceEEEeCCCCceEEeecCCC----
Confidence            1           1111111111111111 222333444555543 22333233  346677776554332211111    


Q ss_pred             eEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeee
Q psy15421        273 ITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAG  306 (340)
Q Consensus       273 i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~  306 (340)
                      .....|+|||+.|+.. .++.++++|+.+++...
T Consensus       235 ~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         235 YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred             cccccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence            2234689999998764 46789999987776543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.97  E-value=0.00066  Score=57.26  Aligned_cols=218  Identities=13%  Similarity=0.107  Sum_probs=123.1

Q ss_pred             CCCEEEEEe-CCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEc--C-CCeEEEEeCC------------------Ce
Q psy15421        108 SGSFVACGG-LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL--D-DNQIVTSSGD------------------MS  165 (340)
Q Consensus       108 ~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~l~~~~~d------------------~~  165 (340)
                      ||+||+... .+..|.+.|+...+..  ...+++. ......++..  + ..++++.+..                  +.
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~--kIi~iPn-~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCD--AILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEE--EEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeee--EEEecCC-CCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence            788887766 5677888888765322  1223332 2223333332  1 2344444432                  23


Q ss_pred             EEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC--------------------------------------Cc
Q psy15421        166 CALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD--------------------------------------AS  207 (340)
Q Consensus       166 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~d--------------------------------------g~  207 (340)
                      +.+.|..+++....+.. .+....++++|+++++++.+.+                                      +-
T Consensus       175 ~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing  253 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  253 (459)
T ss_dssp             EEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence            67789888876655442 3456688999999988876643                                      12


Q ss_pred             EEEEECCCC---eeeeEecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCcCCcEE---------EEeecCCcccceE
Q psy15421        208 AKLWDIRDG---SCKQTFPGHESDINAVTFFPNGWAFATG-SDDATCRLFDIRADQEL---------AMYSHDNIICGIT  274 (340)
Q Consensus       208 i~~wd~~~~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~---------~~~~~~~~~~~i~  274 (340)
                      +.+-|.+..   ...+.++. ......+.++|||++++++ .-+.++.++|++.-..+         ..........+..
T Consensus       254 V~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPL  332 (459)
T d1fwxa2         254 VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL  332 (459)
T ss_dssp             EEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEE
T ss_pred             ceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcc
Confidence            233333221   11111211 1223468999999987655 45899999998642111         0111222333466


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEEEeCCCc----------eeeeeec-----cCCcceEEEEECCCCCEEEEe
Q psy15421        275 SVAFSRSGRLLLAGYDDFNCNVWDSMKT----------ERAGILA-----GHDNRVSCLGVTEDGMAVATG  330 (340)
Q Consensus       275 ~~~~s~~~~~l~~g~~d~~i~iw~~~~~----------~~~~~~~-----~h~~~i~~~~~s~d~~~l~s~  330 (340)
                      -.+|+..|.-..+-.-|..|.-|++...          ..+..+.     ||......-...|||++|++.
T Consensus       333 ht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~  403 (459)
T d1fwxa2         333 HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL  403 (459)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred             ccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEe
Confidence            7799999977777778999999996422          2233332     332211112346888888875

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.85  E-value=0.0056  Score=51.27  Aligned_cols=271  Identities=13%  Similarity=0.090  Sum_probs=136.8

Q ss_pred             EEEEEcCCCCeEEEEeCCC-----------eEEEEeCCCCCeeEE---eeCCCCcEEEEEECCCCCEEEEEeCC-CeEEE
Q psy15421         59 YAMHWGSDSRNLVSASQDG-----------KLIVWDSYTTNKVHA---IPLRSSWVMTCAYAPSGSFVACGGLD-NICSI  123 (340)
Q Consensus        59 ~~~~~s~~~~~l~s~~~d~-----------~i~iwd~~~~~~~~~---~~~~~~~i~~v~~~~~~~~l~~~~~d-~~v~i  123 (340)
                      .......+++.++-|+.+.           .+.+||..++.....   ...+.......++.+++++++.|+.+ +.+.+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            3344456788888887431           377999987764321   12233334466788999999998766 68899


Q ss_pred             EEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCC------CeEEEEECCCCceEEEEe---------cCC----
Q psy15421        124 YSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGD------MSCALWDIETGQQCASFI---------GHT----  184 (340)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~---------~~~----  184 (340)
                      ||..+..  .......+.....-..+...++..++.++.+      ..+.+||+.+++-...-.         .+.    
T Consensus       103 yd~~~~~--w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~  180 (387)
T d1k3ia3         103 YDSSSDS--WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  180 (387)
T ss_dssp             EEGGGTE--EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             ecCccCc--ccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceee
Confidence            9987542  2211122221222222222333445555432      368899998764221100         000    


Q ss_pred             -CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEe--c-C---CCC--CeEEEEEe-cCCCEEEEEeCCC------
Q psy15421        185 -GDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTF--P-G---HES--DINAVTFF-PNGWAFATGSDDA------  248 (340)
Q Consensus       185 -~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~--~-~---h~~--~v~~v~~~-~~~~~l~s~s~d~------  248 (340)
                       ..-..+...++++.++.+..++.+.+++..+.......  . .   +..  .-.++.+. .+++.++.|+...      
T Consensus       181 ~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~  260 (387)
T d1k3ia3         181 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA  260 (387)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred             ccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcc
Confidence             01112233456777777777777778877665432211  1 0   110  11223332 3566677666421      


Q ss_pred             --cEEEEeCcCC---cE-EEEeecCCcccceEEEEEcCCCcEEEEEeCC-----------CcEEEEeCCCce--eeeeec
Q psy15421        249 --TCRLFDIRAD---QE-LAMYSHDNIICGITSVAFSRSGRLLLAGYDD-----------FNCNVWDSMKTE--RAGILA  309 (340)
Q Consensus       249 --~i~iwd~~~~---~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-----------~~i~iw~~~~~~--~~~~~~  309 (340)
                        ...+.+....   .. ............-.+....+++++++.|+.+           .++.+||..+.+  .+..+.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~  340 (387)
T d1k3ia3         261 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS  340 (387)
T ss_dssp             CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS
T ss_pred             cceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCC
Confidence              2233332211   11 1111100001112345667899999998853           147788865443  222221


Q ss_pred             cCCcce-EEEEECCCCCEEEEeeC
Q psy15421        310 GHDNRV-SCLGVTEDGMAVATGSW  332 (340)
Q Consensus       310 ~h~~~i-~~~~~s~d~~~l~s~s~  332 (340)
                       +...- ......+||+.|+.|+.
T Consensus       341 -~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         341 -IVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             -SCCCTTEEEEECTTSCEEEEECC
T ss_pred             -CcccceEEEEECCCCEEEEEeCC
Confidence             11110 23446899999998884

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.79  E-value=0.0049  Score=48.85  Aligned_cols=202  Identities=10%  Similarity=0.087  Sum_probs=102.2

Q ss_pred             eEEecCccCcEEEEEEcCCCCeEEEEeC-C-----CeEEEEeCCCCCeeEEee------CCCCcEEEEEECCCCCEEEEE
Q psy15421         48 RRTLRGHLAKIYAMHWGSDSRNLVSASQ-D-----GKLIVWDSYTTNKVHAIP------LRSSWVMTCAYAPSGSFVACG  115 (340)
Q Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d-----~~i~iwd~~~~~~~~~~~------~~~~~i~~v~~~~~~~~l~~~  115 (340)
                      .+.|..+...+...+|||||+.|+-... +     ..|.+.+..+++......      ..........|+|+|+.++..
T Consensus        33 ~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          33 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            3456677788899999999999885432 2     236677777665433211      111234567899999998875


Q ss_pred             eCCC------eEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCC------------CeEEEEECCCCceE
Q psy15421        116 GLDN------ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGD------------MSCALWDIETGQQC  177 (340)
Q Consensus       116 ~~d~------~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d------------~~v~iwd~~~~~~~  177 (340)
                      ....      .....+....  ..   ...  +........+.++..++.....            ............ .
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~--~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  184 (281)
T d1k32a2         113 DAMQPFSSMTCLYRVENDGI--NF---VPL--NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA-F  184 (281)
T ss_dssp             CTTSSSTTCCEEEEEEGGGT--EE---EEC--CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE-E
T ss_pred             EccCCCccceeeeeecCCCc--ee---EEe--cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccc-e
Confidence            4321      2223333221  11   111  1111122222333333222111            111122222222 2


Q ss_pred             EEEecCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q psy15421        178 ASFIGHTGDVMSLSLAPDMRTFVSGAC--DASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDI  255 (340)
Q Consensus       178 ~~~~~~~~~v~~~~~~~~~~~~~sg~~--dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  255 (340)
                      ..............+.++.. +.....  ...|.++|+..+............  ...|+|||+.|+-. .++.|+++|+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~--~~~~SpDG~~I~f~-~~~~l~~~d~  260 (281)
T d1k32a2         185 KKIVDMSTHVSSPVIVGHRI-YFITDIDGFGQIYSTDLDGKDLRKHTSFTDYY--PRHLNTDGRRILFS-KGGSIYIFNP  260 (281)
T ss_dssp             EEEECCSSCCEEEEEETTEE-EEEECTTSSCEEEEEETTSCSCEECCCCCSSC--EEEEEESSSCEEEE-ETTEEEEECT
T ss_pred             eeccCCccccceeeeecccc-ceecccccccceEEEeCCCCceEEeecCCCcc--cccCcCCCCEEEEE-eCCEEEEEEC
Confidence            22223334444555555532 222233  345667788766544322222223  34689999887754 4688999999


Q ss_pred             cCCcEE
Q psy15421        256 RADQEL  261 (340)
Q Consensus       256 ~~~~~~  261 (340)
                      .+++..
T Consensus       261 ~~g~~~  266 (281)
T d1k32a2         261 DTEKIE  266 (281)
T ss_dssp             TTCCEE
T ss_pred             CCCCEE
Confidence            877654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.73  E-value=0.0073  Score=53.81  Aligned_cols=193  Identities=12%  Similarity=0.071  Sum_probs=106.2

Q ss_pred             CCCeEEEEeCCCeEEEEeC-CCCCeeEEeeCCCC----cE-------EEEEECCCCCEEEEEeCCCeEEEEEccCCCCce
Q psy15421         66 DSRNLVSASQDGKLIVWDS-YTTNKVHAIPLRSS----WV-------MTCAYAPSGSFVACGGLDNICSIYSLKTREGNV  133 (340)
Q Consensus        66 ~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~----~i-------~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~  133 (340)
                      ++..+++.+.++.|...|. .+++.+..+.....    ..       ..+++.  +..++.++.|+.+.-.|..+++...
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w  139 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence            4544444444688888887 46888776542211    00       011222  3456667788877766766654322


Q ss_pred             EEEEeecC-CC-cceEEEEEcCCCeEEEEe------CCCeEEEEECCCCceEEEEecCC---------------------
Q psy15421        134 RVSRELPG-HT-GYLSCCRFLDDNQIVTSS------GDMSCALWDIETGQQCASFIGHT---------------------  184 (340)
Q Consensus       134 ~~~~~~~~-~~-~~v~~~~~~~~~~l~~~~------~d~~v~iwd~~~~~~~~~~~~~~---------------------  184 (340)
                        ...+.. +. ..+......-++.++.+.      ..+.|.-+|+.+|+.+.++....                     
T Consensus       140 --~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~  217 (571)
T d2ad6a1         140 --EVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             --EEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             --cccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcc
Confidence              222211 11 111110011134444443      36789999999999887654221                     


Q ss_pred             ----------------CCe-EEEEEcCCCCEEEEEeC----------------CCcEEEEECCCCeeeeEecCCCCC---
Q psy15421        185 ----------------GDV-MSLSLAPDMRTFVSGAC----------------DASAKLWDIRDGSCKQTFPGHESD---  228 (340)
Q Consensus       185 ----------------~~v-~~~~~~~~~~~~~sg~~----------------dg~i~~wd~~~~~~~~~~~~h~~~---  228 (340)
                                      +.+ ...++.+....++.+..                ...+.-.|.++|+.+-.++.....   
T Consensus       218 ~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd  297 (571)
T d2ad6a1         218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             cccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccc
Confidence                            111 23455666665554443                245677789999877666532221   


Q ss_pred             ------eEEEEEecCCC---EEEEEeCCCcEEEEeCcCCcEEE
Q psy15421        229 ------INAVTFFPNGW---AFATGSDDATCRLFDIRADQELA  262 (340)
Q Consensus       229 ------v~~v~~~~~~~---~l~s~s~d~~i~iwd~~~~~~~~  262 (340)
                            ........++.   .++.++.+|.++++|..+++.+.
T Consensus       298 ~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~  340 (571)
T d2ad6a1         298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV  340 (571)
T ss_dssp             CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cccccccceeeeeccCccccceeeccccceEEEEecCCCcEee
Confidence                  12222233443   46788899999999988887764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.53  E-value=0.022  Score=50.85  Aligned_cols=198  Identities=13%  Similarity=0.106  Sum_probs=108.2

Q ss_pred             CCCeEEEEeCCCeEEEEeC-CCCCeeEEeeCCCC----------cE-EEEEECCC----CCEEEEEeCCCeEEEEEccCC
Q psy15421         66 DSRNLVSASQDGKLIVWDS-YTTNKVHAIPLRSS----------WV-MTCAYAPS----GSFVACGGLDNICSIYSLKTR  129 (340)
Q Consensus        66 ~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~----------~i-~~v~~~~~----~~~l~~~~~d~~v~i~~~~~~  129 (340)
                      ++.++++++.++.+...|. .+++.+..+.....          .+ ..+++.++    ..+++.+..|+.+.-.|..++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            4545555555677777776 57887766532111          00 12333322    346778888888777777665


Q ss_pred             CCceEEEEeecCCCcceEEEEEcCCCeEEEEeC------CCeEEEEECCCCceEEEEecCC-------------------
Q psy15421        130 EGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSG------DMSCALWDIETGQQCASFIGHT-------------------  184 (340)
Q Consensus       130 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~-------------------  184 (340)
                      +........-......+..-...-++.++.+..      .|.|.-+|+++|+.+-++....                   
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g  221 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG  221 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             ceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccccc
Confidence            433222110000111111100112445555433      4889999999999987754211                   


Q ss_pred             ------------------CCe-EEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCeeeeEecC--CC-
Q psy15421        185 ------------------GDV-MSLSLAPDMRTFVSGACD----------------ASAKLWDIRDGSCKQTFPG--HE-  226 (340)
Q Consensus       185 ------------------~~v-~~~~~~~~~~~~~sg~~d----------------g~i~~wd~~~~~~~~~~~~--h~-  226 (340)
                                        ..+ ..+++.+...+++.+..+                ..|.-.|+++++.+-.++.  |. 
T Consensus       222 ~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~  301 (596)
T d1w6sa_         222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE  301 (596)
T ss_dssp             CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred             ccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccc
Confidence                              011 234556666655544332                3477779999987766553  21 


Q ss_pred             ------CCeEEEEE-ecCC---CEEEEEeCCCcEEEEeCcCCcEEEE
Q psy15421        227 ------SDINAVTF-FPNG---WAFATGSDDATCRLFDIRADQELAM  263 (340)
Q Consensus       227 ------~~v~~v~~-~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~  263 (340)
                            ....-+.. ..+|   ..++....+|.+.++|..+++.+..
T Consensus       302 Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~  348 (596)
T d1w6sa_         302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (596)
T ss_dssp             SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cCCccccceeeeeccccccccccceeccccccceeeecCCCCceeee
Confidence                  11212222 2233   3577888999999999988877643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.02  Score=45.45  Aligned_cols=235  Identities=9%  Similarity=-0.020  Sum_probs=131.7

Q ss_pred             eEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEccCCCCceEEEEeecCCCcceEEEEE--cCC
Q psy15421         78 KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGG-LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF--LDD  154 (340)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~  154 (340)
                      .|+-.++.+.+....++ ....+..+.|.+..+.++-.. ..+.|...++............+.........+++  ..+
T Consensus        11 ~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             eEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            47777776554333333 234466788888777666554 44555555543221111111111222222333444  334


Q ss_pred             CeEEEEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeeeeEecCCCCCeEEE
Q psy15421        155 NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSG--ACDASAKLWDIRDGSCKQTFPGHESDINAV  232 (340)
Q Consensus       155 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg--~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v  232 (340)
                      +.+.+-...+.|.+.++...............+..++++|...+++-.  +..+.|.-.++............-...+++
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl  169 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI  169 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEE
Confidence            445555667889999998766544455555678999999966555433  234567666665333333333333567899


Q ss_pred             EEecCCCE-EEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccC
Q psy15421        233 TFFPNGWA-FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGH  311 (340)
Q Consensus       233 ~~~~~~~~-l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h  311 (340)
                      ++++.+.. +.+-...+.|...++....................+++. .+.++.+-..++.|...+..++.....+...
T Consensus       170 ~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~  248 (266)
T d1ijqa1         170 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAEN  248 (266)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEECS
T ss_pred             EeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEEEcC
Confidence            99987654 445566788998888755433322222222235567776 3455555557788888887777665555544


Q ss_pred             Ccc
Q psy15421        312 DNR  314 (340)
Q Consensus       312 ~~~  314 (340)
                      ...
T Consensus       249 ~~~  251 (266)
T d1ijqa1         249 LLS  251 (266)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            333

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.25  E-value=0.056  Score=47.76  Aligned_cols=192  Identities=14%  Similarity=0.132  Sum_probs=103.3

Q ss_pred             CeEEEEeCCCeEEEEeCCCCCeeEEeeCCCC----------cE-EEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEE
Q psy15421         68 RNLVSASQDGKLIVWDSYTTNKVHAIPLRSS----------WV-MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVS  136 (340)
Q Consensus        68 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----------~i-~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~  136 (340)
                      ..|..++.++.|.-.|..+++.+..+.....          .+ ..++.  .+..++.+..++.+.-.|..+++..  ..
T Consensus        67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~--w~  142 (560)
T d1kv9a2          67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAI--WS  142 (560)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEE--EE
T ss_pred             CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEE--ec
Confidence            3556678889999999999998876532110          00 00111  1345666677776666666554322  22


Q ss_pred             EeecCCCc--ceEEEEEcCCCeEEEEeC------CCeEEEEECCCCceEEEEecC-------------------------
Q psy15421        137 RELPGHTG--YLSCCRFLDDNQIVTSSG------DMSCALWDIETGQQCASFIGH-------------------------  183 (340)
Q Consensus       137 ~~~~~~~~--~v~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~-------------------------  183 (340)
                      .....+..  .+.......++.++.+..      .+.|.-+|.++|+.+-++..-                         
T Consensus       143 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (560)
T d1kv9a2         143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY  222 (560)
T ss_dssp             EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred             cCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccccccc
Confidence            21111111  110000001344444322      367999999999988776421                         


Q ss_pred             -----CCCe-EEEEEcCCCCEEEEEeC-------------------CCcEEEEECCCCeeeeEecCCCCCe---------
Q psy15421        184 -----TGDV-MSLSLAPDMRTFVSGAC-------------------DASAKLWDIRDGSCKQTFPGHESDI---------  229 (340)
Q Consensus       184 -----~~~v-~~~~~~~~~~~~~sg~~-------------------dg~i~~wd~~~~~~~~~~~~h~~~v---------  229 (340)
                           ...+ ..+++.|...+++.+..                   ...|.-.|+++++.+-.++.....+         
T Consensus       223 ~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~  302 (560)
T d1kv9a2         223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI  302 (560)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred             ccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEecccccccccccccee
Confidence                 0111 12455565555543221                   2346666888888765554322221         


Q ss_pred             EEEEEecCC---CEEEEEeCCCcEEEEeCcCCcEEEE
Q psy15421        230 NAVTFFPNG---WAFATGSDDATCRLFDIRADQELAM  263 (340)
Q Consensus       230 ~~v~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~  263 (340)
                      .-+.+..++   ..++.+..+|.+.++|-.+++.+..
T Consensus       303 ~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~  339 (560)
T d1kv9a2         303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISA  339 (560)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             eeeeeecCCceeeeeeecCccceEEEEecCCCccccc
Confidence            112223344   3577889999999999988877653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.05  E-value=0.022  Score=47.80  Aligned_cols=178  Identities=11%  Similarity=-0.032  Sum_probs=107.4

Q ss_pred             EEeCCCeEEEEECCCCceEEEEec-CCCCeEEEEE--cCCCCEEEEEeCCC------------------cEEEEECCCCe
Q psy15421        159 TSSGDMSCALWDIETGQQCASFIG-HTGDVMSLSL--APDMRTFVSGACDA------------------SAKLWDIRDGS  217 (340)
Q Consensus       159 ~~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~~~~~sg~~dg------------------~i~~wd~~~~~  217 (340)
                      .-..+..|.+-|+.+.+....+.- ....+-.++.  .|+..+++..+.+.                  .+..+|..+.+
T Consensus       105 NDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~  184 (459)
T d1fwxa2         105 NDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWE  184 (459)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTE
T ss_pred             EcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCce
Confidence            344588899999998887554432 2233444454  45566776666532                  35678888877


Q ss_pred             eeeEecCCCCCeEEEEEecCCCEEEEEeCCC--------------------------------------cEEEEeCcCC-
Q psy15421        218 CKQTFPGHESDINAVTFFPNGWAFATGSDDA--------------------------------------TCRLFDIRAD-  258 (340)
Q Consensus       218 ~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~--------------------------------------~i~iwd~~~~-  258 (340)
                      ....+.- .+....++++|+|+++++.+.+-                                      .+.+-|.+.. 
T Consensus       185 V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~  263 (459)
T d1fwxa2         185 VAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA  263 (459)
T ss_dssp             EEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG-
T ss_pred             EEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccC
Confidence            6544431 23455789999999888776431                                      1233333211 


Q ss_pred             --cEEEEeecCCcccceEEEEEcCCCcEEEEEe-CCCcEEEEeCCCceeee--------eecc---CCcceEEEEECCCC
Q psy15421        259 --QELAMYSHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMKTERAG--------ILAG---HDNRVSCLGVTEDG  324 (340)
Q Consensus       259 --~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~d~~i~iw~~~~~~~~~--------~~~~---h~~~i~~~~~s~d~  324 (340)
                        ..+.....   ..+...+.++|||+++++++ -+.++.++|..+.+...        .+.+   ..-.-...+|...|
T Consensus       264 ~~~v~~yIPV---pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g  340 (459)
T d1fwxa2         264 SSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG  340 (459)
T ss_dssp             -CSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTS
T ss_pred             CcceeEEEec---CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCc
Confidence              01111111   12356789999999988766 58899999976432211        0000   00111346799999


Q ss_pred             CEEEEeeCCCcEEecC
Q psy15421        325 MAVATGSWDSFLRIWN  340 (340)
Q Consensus       325 ~~l~s~s~D~~i~iW~  340 (340)
                      ....|--.|++|--||
T Consensus       341 ~aytslfids~v~kw~  356 (459)
T d1fwxa2         341 NAYTSLFLDSQVVKWN  356 (459)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             eEEEEeeccceEEEEe
Confidence            8888888999999886

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.91  E-value=0.062  Score=42.29  Aligned_cols=188  Identities=11%  Similarity=0.024  Sum_probs=105.7

Q ss_pred             ceEEEEEcC-CCeEE-EEeCCCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeeeE
Q psy15421        145 YLSCCRFLD-DNQIV-TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFV-SGACDASAKLWDIRDGSCKQT  221 (340)
Q Consensus       145 ~v~~~~~~~-~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-sg~~dg~i~~wd~~~~~~~~~  221 (340)
                      .+..+.|.. .+.+. +-..++.|...++........+..-...+..+++..-+..++ +-...+.|.+.++........
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l  116 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL  116 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEE
Confidence            344555543 34443 334567788888876544333333335688999986555554 556678999999875544333


Q ss_pred             ecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEE--eCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEE-eCCCcEEEE
Q psy15421        222 FPGHESDINAVTFFPNGWAFA-TGSDDATCRLF--DIRADQELAMYSHDNIICGITSVAFSRSGRLLLAG-YDDFNCNVW  297 (340)
Q Consensus       222 ~~~h~~~v~~v~~~~~~~~l~-s~s~d~~i~iw--d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g-~~d~~i~iw  297 (340)
                      +......+..++++|...++. +-...+..+|+  ++......... ... ...+..+++.+.++.|... ...+.|...
T Consensus       117 ~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~-~~~-~~~P~glaiD~~~~~lYw~d~~~~~I~~~  194 (263)
T d1npea_         117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA-QDN-LGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (263)
T ss_dssp             ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE-CTT-CSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeee-eec-ccccceEEEeecCcEEEEEeCCCCEEEEE
Confidence            333345688999998655444 43332333444  55443332222 222 2246789998877766544 467789888


Q ss_pred             eCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcE
Q psy15421        298 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFL  336 (340)
Q Consensus       298 ~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i  336 (340)
                      +.........+.+-..+ .++++. ++....+-...+.|
T Consensus       195 ~~~g~~~~~v~~~~~~P-~~lav~-~~~lYwtd~~~~~I  231 (263)
T d1npea_         195 NPAQPGRRKVLEGLQYP-FAVTSY-GKNLYYTDWKTNSV  231 (263)
T ss_dssp             ETTEEEEEEEEECCCSE-EEEEEE-TTEEEEEETTTTEE
T ss_pred             ECCCCCeEEEECCCCCc-EEEEEE-CCEEEEEECCCCEE
Confidence            87554444444433333 466664 33333443333444

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.82  E-value=0.14  Score=45.10  Aligned_cols=162  Identities=11%  Similarity=0.018  Sum_probs=92.6

Q ss_pred             CeEEEEECCCCceEEEEecCCCC---------eEEEEEcCCCC---EEEEEeCCCcEEEEECCCCeeeeEecCC------
Q psy15421        164 MSCALWDIETGQQCASFIGHTGD---------VMSLSLAPDMR---TFVSGACDASAKLWDIRDGSCKQTFPGH------  225 (340)
Q Consensus       164 ~~v~iwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~---~~~sg~~dg~i~~wd~~~~~~~~~~~~h------  225 (340)
                      .++...|+++|+....++.....         .....+..+++   .++.++.+|.+.+.|..+++.+...+..      
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~  351 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccc
Confidence            46788899999988777643222         12222223343   4567889999999999998865322100      


Q ss_pred             -------------------------------CCCe--EEEEEecCCCEEEEEeCC-------------------------
Q psy15421        226 -------------------------------ESDI--NAVTFFPNGWAFATGSDD-------------------------  247 (340)
Q Consensus       226 -------------------------------~~~v--~~v~~~~~~~~l~s~s~d-------------------------  247 (340)
                                                     .+..  ...+++|+...+.....+                         
T Consensus       352 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (571)
T d2ad6a1         352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceee
Confidence                                           0000  124566665555443322                         


Q ss_pred             ------------CcEEEEeCcCCcEEEEeecCCcc-cceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeecc-CCc
Q psy15421        248 ------------ATCRLFDIRADQELAMYSHDNII-CGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAG-HDN  313 (340)
Q Consensus       248 ------------~~i~iwd~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~-h~~  313 (340)
                                  |.|.-+|..+++.+......... .++    .+-.+.++++|+.|+.++.+|.++++.+=.+.- ...
T Consensus       432 ~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~----l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~  507 (571)
T d2ad6a1         432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGT----LYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG  507 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBC----EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             ccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcce----eEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCc
Confidence                        35666777777776655433211 111    112455777899999999999999998754431 111


Q ss_pred             ceEEEEECCCCC-EEEE
Q psy15421        314 RVSCLGVTEDGM-AVAT  329 (340)
Q Consensus       314 ~i~~~~~s~d~~-~l~s  329 (340)
                      .-.-+.|..||+ ||+.
T Consensus       508 ~a~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         508 IGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             CSCCEEEEETTEEEEEE
T ss_pred             eecceEEEECCEEEEEE
Confidence            111244555775 5543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.56  E-value=0.13  Score=40.92  Aligned_cols=252  Identities=10%  Similarity=0.142  Sum_probs=150.2

Q ss_pred             CCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC
Q psy15421         75 QDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD  154 (340)
Q Consensus        75 ~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  154 (340)
                      ....|.|-|+.+...+..-+...+   +.-.+|..+.+|.-+ ..+++++++.+..   ++ .... ....|..-.|.++
T Consensus        43 ~~~~VvIidl~n~~~~~Rrpi~Ad---sAIMhP~~~IiALra-g~~LQiFnletK~---kl-ks~~-~~e~VvfWkWis~  113 (327)
T d1utca2          43 EQAQVVIIDMNDPSNPIRRPISAD---SAIMNPASKVIALKA-GKTLQIFNIEMKS---KM-KAHT-MTDDVTFWKWISL  113 (327)
T ss_dssp             TEEEEEEEETTSTTSCEEEECCCS---EEEECSSSSEEEEEE-TTEEEEEETTTTE---EE-EEEE-CSSCCCEEEESSS
T ss_pred             CCceEEEEECCCCCcceecccchh---hhhcCCCCcEEEEec-CCeEEEEehhHhh---hh-ceEE-cCCCcEEEEecCC
Confidence            334788888877665433332222   222578888877765 6689999997753   11 1111 2234555677777


Q ss_pred             CeEEEEeCCCeEEEEECCCC-ceEEEEecCC----CCeEEEEEcCCCCEEEEE---eC----CCcEEEEECCCCeeeeEe
Q psy15421        155 NQIVTSSGDMSCALWDIETG-QQCASFIGHT----GDVMSLSLAPDMRTFVSG---AC----DASAKLWDIRDGSCKQTF  222 (340)
Q Consensus       155 ~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~~~sg---~~----dg~i~~wd~~~~~~~~~~  222 (340)
                      ..|+.. .+..|.-|+++.. ++...+..|.    ..+.....+++.+.++..   ..    .|.+.||..+.+. -+.+
T Consensus       114 ~~L~lV-T~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~i  191 (327)
T d1utca2         114 NTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPI  191 (327)
T ss_dssp             SEEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEE
T ss_pred             CEEEEE-cCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Cccc
Confidence            776655 4678999999653 3455555443    346777778888765421   12    3778899877543 4567


Q ss_pred             cCCCCCeEEEEEecC--C-CEEEE---EeCCCcEEEEeCcCCc---E-----EEE--eecCCcccceEEEEEcCCCcEEE
Q psy15421        223 PGHESDINAVTFFPN--G-WAFAT---GSDDATCRLFDIRADQ---E-----LAM--YSHDNIICGITSVAFSRSGRLLL  286 (340)
Q Consensus       223 ~~h~~~v~~v~~~~~--~-~~l~s---~s~d~~i~iwd~~~~~---~-----~~~--~~~~~~~~~i~~~~~s~~~~~l~  286 (340)
                      +||......+.+..+  . ..|+-   +...+.+.|-++....   +     ...  +..+....=.-++..++.-.++.
T Consensus       192 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiy  271 (327)
T d1utca2         192 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF  271 (327)
T ss_dssp             CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEE
T ss_pred             cceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEE
Confidence            777544433332211  1 12211   1223567787775421   1     111  11111112245778888878888


Q ss_pred             EEeCCCcEEEEeCCCceeeeeeccCCcceEEEEECCCCCEEEEeeCCCcEE
Q psy15421        287 AGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLR  337 (340)
Q Consensus       287 ~g~~d~~i~iw~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~s~D~~i~  337 (340)
                      .-+.-|.+.+||++++.++..-+--.+.|...+-..+..-++.-..+|.|.
T Consensus       272 viTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         272 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            889999999999999988776555566776655566655666666777664

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.36  E-value=0.31  Score=43.16  Aligned_cols=255  Identities=17%  Similarity=0.110  Sum_probs=136.9

Q ss_pred             CeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcE-EEEEECC--CCCEEEEEeC------CCeEEEEEccCCCCceEEEEe
Q psy15421         68 RNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV-MTCAYAP--SGSFVACGGL------DNICSIYSLKTREGNVRVSRE  138 (340)
Q Consensus        68 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i-~~v~~~~--~~~~l~~~~~------d~~v~i~~~~~~~~~~~~~~~  138 (340)
                      ..++.++.|+.|.-.|..+++.+.......... ..+.-+|  .+..++.+..      .+.|+-+|..+++...+....
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~  201 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeecc
Confidence            358888999999999999999887764321100 0000011  1334444432      478888998887654432211


Q ss_pred             ec----------------------------CC----C-cce-EEEEEcC-CCeEEEEeC----------------CCeEE
Q psy15421        139 LP----------------------------GH----T-GYL-SCCRFLD-DNQIVTSSG----------------DMSCA  167 (340)
Q Consensus       139 ~~----------------------------~~----~-~~v-~~~~~~~-~~~l~~~~~----------------d~~v~  167 (340)
                      .+                            +.    . ..+ ....+.+ .+.+..+..                ..++.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~siv  281 (596)
T d1w6sa_         202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (596)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccc
Confidence            00                            00    0 000 1112222 233333322                24588


Q ss_pred             EEECCCCceEEEEecCCC---------CeEEEEE-cCCCC---EEEEEeCCCcEEEEECCCCeeeeEecCCC--------
Q psy15421        168 LWDIETGQQCASFIGHTG---------DVMSLSL-APDMR---TFVSGACDASAKLWDIRDGSCKQTFPGHE--------  226 (340)
Q Consensus       168 iwd~~~~~~~~~~~~~~~---------~v~~~~~-~~~~~---~~~sg~~dg~i~~wd~~~~~~~~~~~~h~--------  226 (340)
                      ..|+++|+....++....         ...-+.. ..+++   .++....+|.+.++|..+|+++...+...        
T Consensus       282 AlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~  361 (596)
T d1w6sa_         282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSV  361 (596)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred             ccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccccccc
Confidence            889999998776654211         1112221 23343   56778889999999999988664221000        


Q ss_pred             -----CCe--------------------------EEEEEecCCCEEEEEeC-----------------------------
Q psy15421        227 -----SDI--------------------------NAVTFFPNGWAFATGSD-----------------------------  246 (340)
Q Consensus       227 -----~~v--------------------------~~v~~~~~~~~l~s~s~-----------------------------  246 (340)
                           .++                          ...+++|+...+.....                             
T Consensus       362 d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~  441 (596)
T d1w6sa_         362 DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPG  441 (596)
T ss_dssp             CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred             cccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccC
Confidence                 000                          12345554433332211                             


Q ss_pred             ----------CCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeecc----CC
Q psy15421        247 ----------DATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAG----HD  312 (340)
Q Consensus       247 ----------d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~----h~  312 (340)
                                -|.|.-||..+++.+.........   ..-.++..+.+++.|+.||.++.+|..+++.+=.+.-    +.
T Consensus       442 ~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~---~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a  518 (596)
T d1w6sa_         442 PKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAV---WGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIG  518 (596)
T ss_dssp             TTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCC---CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             cccCcccCCCcceEEEEeCCCCceecccCCCCCC---ccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCccc
Confidence                      145677777777766654433211   1111223567788899999999999999998755431    22


Q ss_pred             cceEEEEECCCCC-EEE
Q psy15421        313 NRVSCLGVTEDGM-AVA  328 (340)
Q Consensus       313 ~~i~~~~~s~d~~-~l~  328 (340)
                      .+   +.|.-||+ ||+
T Consensus       519 ~P---~tY~~dGkQYva  532 (596)
T d1w6sa_         519 YP---MTYTHKGTQYVA  532 (596)
T ss_dssp             CC---EEEEETTEEEEE
T ss_pred             CC---eEEEECCEEEEE
Confidence            33   33445775 444

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.26  E-value=0.18  Score=39.52  Aligned_cols=217  Identities=9%  Similarity=-0.031  Sum_probs=121.8

Q ss_pred             CcEEEEEECCCCCEEEEEe-CCCeEEEEEccCCCCceEEEEeecCCCcceEEEEEc-CCCe-EEEEeCCCeEEEEECCCC
Q psy15421         98 SWVMTCAYAPSGSFVACGG-LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL-DDNQ-IVTSSGDMSCALWDIETG  174 (340)
Q Consensus        98 ~~i~~v~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-l~~~~~d~~v~iwd~~~~  174 (340)
                      ..+..++|.+..+.++-.. .++.|+..++..... ..+   +.........+.+. ..+. +.+-...+.|.+.++...
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-~~v---~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~  111 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTI---IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT  111 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEE---ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-EEE---EEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCc
Confidence            3466778887777666554 456677666654321 111   22222334455553 2334 445556788999998755


Q ss_pred             ceEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCc--EEEEECCCCeeeeEecCCCCCeEEEEEecCCCEE-EEEeCCCcE
Q psy15421        175 QQCASFIGHTGDVMSLSLAPDMRTFVSGA-CDAS--AKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF-ATGSDDATC  250 (340)
Q Consensus       175 ~~~~~~~~~~~~v~~~~~~~~~~~~~sg~-~dg~--i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~s~d~~i  250 (340)
                      .....+......+..++++|...+++-.. ..+.  |.--++............-....++++++.+..| .+-...+.|
T Consensus       112 ~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I  191 (263)
T d1npea_         112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA  191 (263)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEE
Confidence            43222222335688999999777665332 2233  4434554332222232233456899999876555 554567889


Q ss_pred             EEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeeccC-CcceEEEEECC
Q psy15421        251 RLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGH-DNRVSCLGVTE  322 (340)
Q Consensus       251 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~~h-~~~i~~~~~s~  322 (340)
                      ...|+.............   ....+++. .+.+..+-..++.|...|..+++....+..+ ......+++-+
T Consensus       192 ~~~~~~g~~~~~v~~~~~---~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         192 ECLNPAQPGRRKVLEGLQ---YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             EEEETTEEEEEEEEECCC---SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             EEEECCCCCeEEEECCCC---CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence            989887554433332222   23466665 4555556556788888888877766655322 23444554433

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.10  E-value=0.4  Score=42.03  Aligned_cols=143  Identities=13%  Similarity=0.048  Sum_probs=87.2

Q ss_pred             CeEEEEECCCCceEEEEecCCCCe---------EEEEEcCCC---CEEEEEeCCCcEEEEECCCCeeeeEecCCC-----
Q psy15421        164 MSCALWDIETGQQCASFIGHTGDV---------MSLSLAPDM---RTFVSGACDASAKLWDIRDGSCKQTFPGHE-----  226 (340)
Q Consensus       164 ~~v~iwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~---~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~-----  226 (340)
                      .+|.-.|+++++....++.....+         .-+.+..++   ..++.+..+|.+.++|..+++++...+.-.     
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            457778899998876665432222         112222233   256678899999999999998764321100     


Q ss_pred             -------------------CC------------eEEEEEecCCCEEEEEeC-----------------------------
Q psy15421        227 -------------------SD------------INAVTFFPNGWAFATGSD-----------------------------  246 (340)
Q Consensus       227 -------------------~~------------v~~v~~~~~~~~l~s~s~-----------------------------  246 (340)
                                         ..            -...+++|+...+.....                             
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                               00            013456666555444332                             


Q ss_pred             -------CCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeec
Q psy15421        247 -------DATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA  309 (340)
Q Consensus       247 -------d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~  309 (340)
                             .|.+.-||+.+++.+..+.......   .-.++-.+.++++|+.|+.++.+|..+++.+=.+.
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~---gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYPTHWN---GGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEESSSCC---CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCCCCCC---CceeEECCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence                   2457778888888777665433221   11122246678889999999999999999875543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.68  E-value=0.43  Score=39.07  Aligned_cols=230  Identities=15%  Similarity=0.140  Sum_probs=115.3

Q ss_pred             EEEEECCCCCEEEEEeCCC-----------eEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCCeE-EEEeC-CCeEE
Q psy15421        101 MTCAYAPSGSFVACGGLDN-----------ICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQI-VTSSG-DMSCA  167 (340)
Q Consensus       101 ~~v~~~~~~~~l~~~~~d~-----------~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l-~~~~~-d~~v~  167 (340)
                      .......+|+.++.|+.+.           .+.+||..+..-....... ..+........+..++.+ +.|+. ...+.
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-TKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-CSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCC-CCcccceeEEEEecCCcEEEeecCCCccee
Confidence            3344456777777776431           2668888764321111111 122222233445555554 44443 35799


Q ss_pred             EEECCCCceEEEEec-CCCCeEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeeeeEecC----------CC----
Q psy15421        168 LWDIETGQQCASFIG-HTGDVMSLSLAPDMRTFVSGACD------ASAKLWDIRDGSCKQTFPG----------HE----  226 (340)
Q Consensus       168 iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~sg~~d------g~i~~wd~~~~~~~~~~~~----------h~----  226 (340)
                      +||..+.+-...-.. ....-.+++..+|+++++.|+.+      ..+.+||..+++-. .+..          +.    
T Consensus       102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~  180 (387)
T d1k3ia3         102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT-SLPNAKVNPMLTADKQGLYR  180 (387)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE-EETTSCSGGGCCCCTTGGGT
T ss_pred             EecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCcee-ecCCCcccccccccccceee
Confidence            999987653221110 11123466777899999888753      46899998876421 1110          00    


Q ss_pred             -CCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEe--ecC-----CcccceEEEEE-cCCCcEEEEEeCCC-----
Q psy15421        227 -SDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMY--SHD-----NIICGITSVAF-SRSGRLLLAGYDDF-----  292 (340)
Q Consensus       227 -~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~~-----~~~~~i~~~~~-s~~~~~l~~g~~d~-----  292 (340)
                       ..-..+..-++|+.+..++.+..+.+++..+.......  ...     .... -.++.+ ..++++++.|+...     
T Consensus       181 ~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~v~v~GG~~~~~~~~  259 (387)
T d1k3ia3         181 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMC-GNAVMYDAVKGKILTFGGSPDYQDSD  259 (387)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBT-CEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred             ccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCccccc-ccEEEeeccCCceEEEEeccCCCCCc
Confidence             00112333457778888887887888777654332211  110     0111 122223 34677888876432     


Q ss_pred             ---cEEEEeCCCc----eeeeeec--cCCcceEEEEECCCCCEEEEeeCC
Q psy15421        293 ---NCNVWDSMKT----ERAGILA--GHDNRVSCLGVTEDGMAVATGSWD  333 (340)
Q Consensus       293 ---~i~iw~~~~~----~~~~~~~--~h~~~i~~~~~s~d~~~l~s~s~D  333 (340)
                         ...+.+....    .......  .+...-.+....+||+.++.|+.+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~  309 (387)
T d1k3ia3         260 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR  309 (387)
T ss_dssp             CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred             ccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcc
Confidence               2233332211    1111110  112222345567899999988854

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.75  E-value=0.82  Score=37.05  Aligned_cols=126  Identities=8%  Similarity=0.050  Sum_probs=69.8

Q ss_pred             CCCeEEEEECCCCce-E---EEEec-CCCCeEEEEEcCCCCEEEEEe---CC------------CcEEEEECCCCeeeeE
Q psy15421        162 GDMSCALWDIETGQQ-C---ASFIG-HTGDVMSLSLAPDMRTFVSGA---CD------------ASAKLWDIRDGSCKQT  221 (340)
Q Consensus       162 ~d~~v~iwd~~~~~~-~---~~~~~-~~~~v~~~~~~~~~~~~~sg~---~d------------g~i~~wd~~~~~~~~~  221 (340)
                      ...+|.++++..... +   .++.. ....++.++...++.+++|-.   .+            ++..+|....+.....
T Consensus       122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~  201 (340)
T d1v04a_         122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV  201 (340)
T ss_dssp             TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEE
T ss_pred             CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEE
Confidence            356788888754321 1   12221 223478888888888887721   11            2333443333333222


Q ss_pred             ecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcC-CCcEEEEE
Q psy15421        222 FPGHESDINAVTFFPNGWAF-ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSR-SGRLLLAG  288 (340)
Q Consensus       222 ~~~h~~~v~~v~~~~~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g  288 (340)
                      .. .-.-.+.|+++|+++++ ++-+..+.|+.|++.....+...........+-.+.+.+ +|.+.+.+
T Consensus       202 ~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         202 AE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             cC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            22 23457899999998765 555667889999987554333222112223355677776 45554443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.47  E-value=0.54  Score=41.24  Aligned_cols=80  Identities=14%  Similarity=0.141  Sum_probs=46.3

Q ss_pred             cEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCc-EE
Q psy15421        207 SAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR-LL  285 (340)
Q Consensus       207 ~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l  285 (340)
                      .+.-||+.+++.+-.++.. .+...=...-.+..+++|+.||.++.+|.++++.+..+....-..+ .-+.|.-+|+ |+
T Consensus       458 ~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~-~P~ty~~~GkQYv  535 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVA-APSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS-CCEEEEETTEEEE
T ss_pred             cEEEeCCCCCceEeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccc-cCEEEEECCEEEE
Confidence            4556666666655443311 1111111223466777899999999999999999988765432111 1134445776 44


Q ss_pred             EEE
Q psy15421        286 LAG  288 (340)
Q Consensus       286 ~~g  288 (340)
                      ++.
T Consensus       536 ~v~  538 (573)
T d1kb0a2         536 SVA  538 (573)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.29  E-value=1.2  Score=37.14  Aligned_cols=244  Identities=12%  Similarity=0.106  Sum_probs=118.0

Q ss_pred             cEEEEEEcCCCCeEE-EEeCC----CeEEEEeCCCCCeeE-EeeCCCCcEEEEEECCCCCEEEEEeCC------------
Q psy15421         57 KIYAMHWGSDSRNLV-SASQD----GKLIVWDSYTTNKVH-AIPLRSSWVMTCAYAPSGSFVACGGLD------------  118 (340)
Q Consensus        57 ~v~~~~~s~~~~~l~-s~~~d----~~i~iwd~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~~~~~d------------  118 (340)
                      .+...+++||+++++ +-+.+    .++++.|+.+++.+. .+..  .....++|.+|+..|+....+            
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence            345678899999877 33333    469999999998653 2221  112457899999987654432            


Q ss_pred             ----CeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCCC-eEE-EEe--CCCeEEEE--ECCCCce-------EEEEe
Q psy15421        119 ----NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDN-QIV-TSS--GDMSCALW--DIETGQQ-------CASFI  181 (340)
Q Consensus       119 ----~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~--~d~~v~iw--d~~~~~~-------~~~~~  181 (340)
                          ..+..+.+.+....-............+.....+.++ .++ ...  .+....+|  |+.....       ...+.
T Consensus       204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  283 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI  283 (430)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred             cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEee
Confidence                2456666655433222222222223334444445554 333 222  23334444  4432110       01111


Q ss_pred             cCCCCeEEEEEcCCCCEEEEE---eCCCcEEEEECCCCee---eeEecCCCCCeEEEEEecCCCEEE-EEeCCCc--EEE
Q psy15421        182 GHTGDVMSLSLAPDMRTFVSG---ACDASAKLWDIRDGSC---KQTFPGHESDINAVTFFPNGWAFA-TGSDDAT--CRL  252 (340)
Q Consensus       182 ~~~~~v~~~~~~~~~~~~~sg---~~dg~i~~wd~~~~~~---~~~~~~h~~~v~~v~~~~~~~~l~-s~s~d~~--i~i  252 (340)
                      ..........-+.++.+++..   +.++.|...++.....   ...++.+...+..-.+...+.+|+ ..-.++.  |++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v  363 (430)
T d1qfma1         284 DNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL  363 (430)
T ss_dssp             CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred             cccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEE
Confidence            111111122222223333322   2346666667665432   123344555554444444444555 4445544  788


Q ss_pred             EeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCC----CcEEEEeCCCcee
Q psy15421        253 FDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD----FNCNVWDSMKTER  304 (340)
Q Consensus       253 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d----~~i~iw~~~~~~~  304 (340)
                      ++...+.........  ...+..+...++...+.....+    .++.-+|+.+++.
T Consensus       364 ~~~~~~~~~~~~~~~--~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         364 HDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EECCCCcEEEecCCC--CceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            888766554333222  1234444445555544433332    6677888776643

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.34  E-value=1.9  Score=36.22  Aligned_cols=54  Identities=17%  Similarity=0.301  Sum_probs=39.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeee--Eec------CCCCCeEEEEEecC
Q psy15421        184 TGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQ--TFP------GHESDINAVTFFPN  237 (340)
Q Consensus       184 ~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~--~~~------~h~~~v~~v~~~~~  237 (340)
                      -...++|+|.|+++++++--..|.|++++..++....  .+.      .-+.....|+++|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3468899999999988876568999999987765432  221      11245678999985

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.20  E-value=2.4  Score=36.94  Aligned_cols=80  Identities=20%  Similarity=0.252  Sum_probs=50.5

Q ss_pred             CcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCc-E
Q psy15421        206 ASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR-L  284 (340)
Q Consensus       206 g~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~  284 (340)
                      |.|.-+|+.+++.+-..+.+ .++..-.....+..++.|+.||.++-+|.++++.+..+....-... .-+.|..+|+ |
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~-~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVS-PPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS-CCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccc-cCEEEEECCEEE
Confidence            56777788887765544422 2222212234566777899999999999999999988765432211 1245666786 4


Q ss_pred             EEE
Q psy15421        285 LLA  287 (340)
Q Consensus       285 l~~  287 (340)
                      +++
T Consensus       544 v~i  546 (582)
T d1flga_         544 LGV  546 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.17  E-value=0.77  Score=38.87  Aligned_cols=55  Identities=11%  Similarity=0.126  Sum_probs=38.4

Q ss_pred             CCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEeecC------CcccceEEEEEcCC
Q psy15421        227 SDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHD------NIICGITSVAFSRS  281 (340)
Q Consensus       227 ~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~------~~~~~i~~~~~s~~  281 (340)
                      ...++|+|.|+++.|++--.+|.|++++..++.........      .-..++..++|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            45779999999998887755799999987765443222111      11245788999995

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=92.74  E-value=2.8  Score=36.43  Aligned_cols=58  Identities=12%  Similarity=0.063  Sum_probs=37.8

Q ss_pred             cEEEEeCcCCcEEEEeecCCcccceEEEEEcCCCcEEEEEeCCCcEEEEeCCCceeeeeec
Q psy15421        249 TCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA  309 (340)
Q Consensus       249 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw~~~~~~~~~~~~  309 (340)
                      .+.-||..+++.+..........   .-..+-.+.++++|+.|+.++.+|..+++.+-.+.
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~---gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWN---GGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCC---CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEeCCCCCceEeeecCCCCCC---CceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            45566777766666554332111   11122356788889999999999999999875543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.33  E-value=2  Score=33.82  Aligned_cols=145  Identities=10%  Similarity=0.146  Sum_probs=81.1

Q ss_pred             EEEEEECCCCCEEEEEe---C----CCeEEEEEccCCCCceEEEEeecCCCcceEEEEEcCC---CeEEE-E---eCCCe
Q psy15421        100 VMTCAYAPSGSFVACGG---L----DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD---NQIVT-S---SGDMS  165 (340)
Q Consensus       100 i~~v~~~~~~~~l~~~~---~----d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~l~~-~---~~d~~  165 (340)
                      |..-..+++.+.++..|   .    .|.+++|....+     ....+.+|......+....+   ..+++ +   ...+.
T Consensus       150 IInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~k  224 (327)
T d1utca2         150 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK  224 (327)
T ss_dssp             EEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-----EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEE
T ss_pred             EEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-----cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcE
Confidence            45555566666655432   1    245667765432     34456677665444433211   12332 2   22367


Q ss_pred             EEEEECCCCc----e-----EEEEe---cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEE
Q psy15421        166 CALWDIETGQ----Q-----CASFI---GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVT  233 (340)
Q Consensus       166 v~iwd~~~~~----~-----~~~~~---~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~  233 (340)
                      +.+.++....    .     +..+.   ...+...+|..++.-..++.-..-|.|.+||++++.++..-+--..+|-..+
T Consensus       225 LhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a  304 (327)
T d1utca2         225 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA  304 (327)
T ss_dssp             EEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             EEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEec
Confidence            8888875421    1     11111   1345677888998888888889999999999999998765543344444333


Q ss_pred             EecCCCEEEEEeCCCc
Q psy15421        234 FFPNGWAFATGSDDAT  249 (340)
Q Consensus       234 ~~~~~~~l~s~s~d~~  249 (340)
                      -+....-++....+|.
T Consensus       305 ~~~~~~Gi~~VNr~Gq  320 (327)
T d1utca2         305 PHEATAGIIGVNRKGQ  320 (327)
T ss_dssp             EETTTTEEEEEETTSE
T ss_pred             cCCCCceEEEECCCCe
Confidence            3333223333334443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.00  E-value=2  Score=33.12  Aligned_cols=165  Identities=10%  Similarity=-0.009  Sum_probs=92.0

Q ss_pred             CcEEEEEEcCCCC-eEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEccCCCCceE
Q psy15421         56 AKIYAMHWGSDSR-NLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVR  134 (340)
Q Consensus        56 ~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~  134 (340)
                      ..+.++++.+.+. ..++-...+.|.+.++........+.........+++.|...+++-......-+|+..........
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~  156 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  156 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence            4566788876444 455556678899999876665555555555678888888666555444332223443333222222


Q ss_pred             EEEeecCCCcceEEEEEcC-CCeEE-EEeCCCeEEEEECCCCceEEEEecC--CCCeEEEEEcCCCCEEEEEeCCCcEEE
Q psy15421        135 VSRELPGHTGYLSCCRFLD-DNQIV-TSSGDMSCALWDIETGQQCASFIGH--TGDVMSLSLAPDMRTFVSGACDASAKL  210 (340)
Q Consensus       135 ~~~~~~~~~~~v~~~~~~~-~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~sg~~dg~i~~  210 (340)
                      ..  ....-.....+.... .++|. +-...+.|...++............  ......+++. ++..+.+-..++.|.-
T Consensus       157 ~l--~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~  233 (266)
T d1ijqa1         157 SL--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFS  233 (266)
T ss_dssp             EE--ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             cc--cccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEE
Confidence            11  112222334455543 34444 4455788888888654432222222  2346677776 3445555556788877


Q ss_pred             EECCCCeeeeEec
Q psy15421        211 WDIRDGSCKQTFP  223 (340)
Q Consensus       211 wd~~~~~~~~~~~  223 (340)
                      .+..++.....+.
T Consensus       234 ~~~~~g~~~~~~~  246 (266)
T d1ijqa1         234 ANRLTGSDVNLLA  246 (266)
T ss_dssp             EETTTCCCCEEEE
T ss_pred             EECCCCcceEEEE
Confidence            7777665544444

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.98  E-value=2.7  Score=34.43  Aligned_cols=139  Identities=10%  Similarity=0.003  Sum_probs=80.1

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCcCCcEEEEee
Q psy15421        186 DVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS  265 (340)
Q Consensus       186 ~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  265 (340)
                      .+..++|+-+  .++. ..++.+..++...-........-..++..+.+.|.  .++....++.+.++++...+......
T Consensus        88 ~v~~vafs~d--~l~v-~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGD--QVLV-STRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETT--EEEE-EESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCC--EEEE-EeCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccC
Confidence            5888999755  3433 45567888877654333333334456777777664  67777789999999988765332210


Q ss_pred             ---cCCcccceEEEEEcCCCcEEEEEeCCCcEEEE-eCCCceeeeeeccCCcceEEEEECCCCCEEEEe
Q psy15421        266 ---HDNIICGITSVAFSRSGRLLLAGYDDFNCNVW-DSMKTERAGILAGHDNRVSCLGVTEDGMAVATG  330 (340)
Q Consensus       266 ---~~~~~~~i~~~~~s~~~~~l~~g~~d~~i~iw-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~s~  330 (340)
                         .......+.+++|++.|+.++++..+. ..+- +......+-........|.++.|-.+..+++.-
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence               001123477888888888888874332 2221 111111010111234567888888777666654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.63  E-value=3.9  Score=35.58  Aligned_cols=111  Identities=15%  Similarity=0.078  Sum_probs=58.6

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCeeEEeeCCC--------CcE-EEEEECCCCCEEEEEeCCCeEEEEEccCCCCceEEEE
Q psy15421         67 SRNLVSASQDGKLIVWDSYTTNKVHAIPLRS--------SWV-MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSR  137 (340)
Q Consensus        67 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------~~i-~~v~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~  137 (340)
                      +..|..++.++.|.-.|..+++.+..+....        ..+ ..+++  .+..++.+..++.+.-.|..+++..  ...
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~--~~~~i~~~t~~~~l~alda~tG~~~--W~~  143 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVV--WKK  143 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEE--EEE
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE--eCCceEEecCCCeEEEeccccccee--eee
Confidence            3466778889999999999999887654221        000 01111  1345666777887666676655422  222


Q ss_pred             eecCCCc--ce--EEEEEcC---CCeEE-EE------eCCCeEEEEECCCCceEEEEe
Q psy15421        138 ELPGHTG--YL--SCCRFLD---DNQIV-TS------SGDMSCALWDIETGQQCASFI  181 (340)
Q Consensus       138 ~~~~~~~--~v--~~~~~~~---~~~l~-~~------~~d~~v~iwd~~~~~~~~~~~  181 (340)
                      .+..+..  ..  .-....+   ...++ .+      ...+.|.-+|.++|+.+-++.
T Consensus       144 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~  201 (582)
T d1flga_         144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             cccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEe
Confidence            2211110  00  0001111   12222 22      234678889999998876653

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.52  E-value=2.3  Score=32.71  Aligned_cols=102  Identities=14%  Similarity=0.199  Sum_probs=47.5

Q ss_pred             CCEEEEEeCC-----CcEEEEECCCCeeeeEecCCC--CCeEEEEEecCCCEEEEEeCC-----CcEEEEeCcCCcEEEE
Q psy15421        196 MRTFVSGACD-----ASAKLWDIRDGSCKQTFPGHE--SDINAVTFFPNGWAFATGSDD-----ATCRLFDIRADQELAM  263 (340)
Q Consensus       196 ~~~~~sg~~d-----g~i~~wd~~~~~~~~~~~~h~--~~v~~v~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~~  263 (340)
                      ...++.|+.+     ..+..||..+++-.. .....  ....++... ++..++.|+.+     .....+|..+.+-...
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~  226 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRM-ITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFV  226 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             ecceEecCcccccccceEEEeecccccccc-ccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecc
Confidence            3455555543     456778877654321 11111  111122222 35566666544     3456667655432221


Q ss_pred             eecCCcccceEEEEEcCCCcEEEEEeCCCc-----EEEEeCCC
Q psy15421        264 YSHDNIICGITSVAFSRSGRLLLAGYDDFN-----CNVWDSMK  301 (340)
Q Consensus       264 ~~~~~~~~~i~~~~~s~~~~~l~~g~~d~~-----i~iw~~~~  301 (340)
                      -..........++.  .++++++.|+.++.     +.+||..+
T Consensus       227 ~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~v~~yd~~~  267 (288)
T d1zgka1         227 APMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDT  267 (288)
T ss_dssp             CCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             cCccCcccceEEEE--ECCEEEEEecCCCCeecceEEEEECCC
Confidence            11111111122222  26788888876543     67788664

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.76  E-value=5.2  Score=32.60  Aligned_cols=176  Identities=14%  Similarity=0.050  Sum_probs=92.8

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEccC---------CCCceEEEEeecCCCcceEEEEEcCCCeEEEEeCCCeEEEEEC
Q psy15421        101 MTCAYAPSGSFVACGGLDNICSIYSLKT---------REGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDI  171 (340)
Q Consensus       101 ~~v~~~~~~~~l~~~~~d~~v~i~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~v~iwd~  171 (340)
                      .-++.++...+++.|+.++ +.|.....         ..........+    ..+..+.|+.+ .++ ...++.+..++.
T Consensus        40 ~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d-~l~-v~~~~~l~~~~~  112 (381)
T d1xipa_          40 QNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGD-QVL-VSTRNALYSLDL  112 (381)
T ss_dssp             BCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETT-EEE-EEESSEEEEEES
T ss_pred             ceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCC-EEE-EEeCCCEEEEEe
Confidence            3455666666777777665 45555321         11112222222    24666777544 333 345567777877


Q ss_pred             CCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeeeEecC-----CCCCeEEEEEecCCCEEEEEeC
Q psy15421        172 ETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG-----HESDINAVTFFPNGWAFATGSD  246 (340)
Q Consensus       172 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~~~~~~~~~~~-----h~~~v~~v~~~~~~~~l~s~s~  246 (340)
                      ..-...........++..+.+.|.  .++....+|.+-++++.++.......+     -.+.+.+++|++.|.+++++..
T Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g  190 (381)
T d1xipa_         113 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRN  190 (381)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred             eccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCC
Confidence            654433333334556778887775  466677899999999988754322211     1245667777777777776643


Q ss_pred             CCcEEEEeCcCCcEEEEee-cCCcccceEEEEEcCCCcEEEEE
Q psy15421        247 DATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRLLLAG  288 (340)
Q Consensus       247 d~~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~g  288 (340)
                      ++.-.--++....   .+. .......+.++.|-.+..++++-
T Consensus       191 ~~~q~k~~i~~~~---~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         191 GEMEKQFEFSLPS---ELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             TEEEEEEEECCCH---HHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CceeeccCCCCcc---ccCCCcCCCcceeEEEEecCceEEEEE
Confidence            2210000111000   000 00112246788887776666653

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=87.59  E-value=4.8  Score=30.84  Aligned_cols=49  Identities=10%  Similarity=0.065  Sum_probs=23.5

Q ss_pred             CCeEEEEECCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy15421        163 DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIR  214 (340)
Q Consensus       163 d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~sg~~dg~i~~wd~~  214 (340)
                      |+.|..|-....-++..-......+..++.-..  +.+. -.||.+..|...
T Consensus        43 dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~--~~~a-l~dg~v~~wG~~   91 (273)
T d1jtdb_          43 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY--HSLA-LKDGEVIAWGGN   91 (273)
T ss_dssp             TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSS--EEEE-EETTEEEEEECC
T ss_pred             CCEEEEEeCCCCCceeeeecccccceEEecCCC--ceee-eeeeeeeccCCC
Confidence            788888865443222111112233444443222  2222 247888888753

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=84.00  E-value=9  Score=30.72  Aligned_cols=195  Identities=11%  Similarity=0.226  Sum_probs=111.0

Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCeeEEeeCCCCcEEEEEEC------CCCCEEEEEe-CC---CeEEEEEccCCCCceE
Q psy15421         65 SDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYA------PSGSFVACGG-LD---NICSIYSLKTREGNVR  134 (340)
Q Consensus        65 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~v~~~------~~~~~l~~~~-~d---~~v~i~~~~~~~~~~~  134 (340)
                      |+..+++.....+-|+++|+. ++.+..++.  +.+..|...      .....++.++ .+   ..+.+|.+........
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            456788888888889999985 777766643  344444322      2222344444 22   4688888864333221


Q ss_pred             EEEeecCC-----CcceEEEEE--cC-CC--eEEEEeCCCeEEEEECC---CCc----eEEEEecCCCCeEEEEEcCCCC
Q psy15421        135 VSRELPGH-----TGYLSCCRF--LD-DN--QIVTSSGDMSCALWDIE---TGQ----QCASFIGHTGDVMSLSLAPDMR  197 (340)
Q Consensus       135 ~~~~~~~~-----~~~v~~~~~--~~-~~--~l~~~~~d~~v~iwd~~---~~~----~~~~~~~~~~~v~~~~~~~~~~  197 (340)
                      ... .+..     ...+..+++  .+ .+  .++....+|.+..|.+.   .+.    .++.+ .....+-.|.+.+...
T Consensus       115 ~~~-~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f-~~~~q~EGCVvDde~~  192 (353)
T d1h6la_         115 SIT-DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF-KMNSQTEGMAADDEYG  192 (353)
T ss_dssp             ECS-CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE-ECSSCEEEEEEETTTT
T ss_pred             ccc-ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc-CCCCccceEEEeCCCC
Confidence            111 0101     112333333  33 34  34555668888888763   222    22333 3455688899999888


Q ss_pred             EEEEEeCCCcEEEEECCC-----CeeeeEecC--CCCCeEEEEEec----CCCEEEEEeCCCcEEEEeCcCC-cEEEEe
Q psy15421        198 TFVSGACDASAKLWDIRD-----GSCKQTFPG--HESDINAVTFFP----NGWAFATGSDDATCRLFDIRAD-QELAMY  264 (340)
Q Consensus       198 ~~~sg~~dg~i~~wd~~~-----~~~~~~~~~--h~~~v~~v~~~~----~~~~l~s~s~d~~i~iwd~~~~-~~~~~~  264 (340)
                      .|+.+-.+.-|..++...     +..+....+  ....+..|+...    +|..++|.-.+.+..+||.... +.+..|
T Consensus       193 ~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         193 SLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF  271 (353)
T ss_dssp             EEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             cEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence            888888877666665532     122222222  356788888764    2445566666888999998753 455444

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=82.54  E-value=10  Score=30.19  Aligned_cols=184  Identities=5%  Similarity=0.047  Sum_probs=97.7

Q ss_pred             EEEEEEcCCCCeEEEEeC------------CCeEEEEeCCCCCee-EEee--CCC-----CcEEEEE--ECCCCC-EEEE
Q psy15421         58 IYAMHWGSDSRNLVSASQ------------DGKLIVWDSYTTNKV-HAIP--LRS-----SWVMTCA--YAPSGS-FVAC  114 (340)
Q Consensus        58 v~~~~~s~~~~~l~s~~~------------d~~i~iwd~~~~~~~-~~~~--~~~-----~~i~~v~--~~~~~~-~l~~  114 (340)
                      --++...|++..+++++.            .|.|.++|+.+.+.. ..+.  ...     -....+.  -.+++. +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            346777899988877652            388999998765421 1111  110     0123332  245565 3444


Q ss_pred             Ee---CCCeEEEEEccCCCCceEEEEeecCCC-cceEEEEEcCCCeEEEEe------------------CCCeEEEEECC
Q psy15421        115 GG---LDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIVTSS------------------GDMSCALWDIE  172 (340)
Q Consensus       115 ~~---~d~~v~i~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~~~~------------------~d~~v~iwd~~  172 (340)
                      ..   ...+|.++++............+.... ...+.+....++.+....                  ..+.+..||..
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            43   456788888876555555544443321 233444444444433331                  11234444433


Q ss_pred             CCceEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeeeE--ecCCCCCeEEEEEecC-CCEEEEE
Q psy15421        173 TGQQCASFIGHTGDVMSLSLAPDMRTFV-SGACDASAKLWDIRDGSCKQT--FPGHESDINAVTFFPN-GWAFATG  244 (340)
Q Consensus       173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-sg~~dg~i~~wd~~~~~~~~~--~~~h~~~v~~v~~~~~-~~~l~s~  244 (340)
                        +. ......-...+.++++|++++++ +-...+.|+.|++........  ...-.+..-.+.+.+. |...+.+
T Consensus       197 --~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         197 --DV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             --CE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             --ce-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence              22 22222334688999999998665 455688999998864432211  1112344556777764 4444443