Psyllid ID: psy15453
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 247 | 2.2.26 [Sep-21-2011] | |||||||
| Q13162 | 271 | Peroxiredoxin-4 OS=Homo s | yes | N/A | 0.753 | 0.686 | 0.677 | 1e-75 | |
| O08807 | 274 | Peroxiredoxin-4 OS=Mus mu | yes | N/A | 0.753 | 0.678 | 0.666 | 6e-75 | |
| Q9BGI2 | 274 | Peroxiredoxin-4 OS=Bos ta | yes | N/A | 0.753 | 0.678 | 0.671 | 1e-74 | |
| Q9Z0V5 | 273 | Peroxiredoxin-4 OS=Rattus | yes | N/A | 0.753 | 0.681 | 0.666 | 1e-74 | |
| P35704 | 198 | Peroxiredoxin-2 OS=Rattus | no | N/A | 0.761 | 0.949 | 0.618 | 1e-67 | |
| Q2PFZ3 | 198 | Peroxiredoxin-2 OS=Macaca | N/A | N/A | 0.761 | 0.949 | 0.613 | 2e-67 | |
| P32119 | 198 | Peroxiredoxin-2 OS=Homo s | no | N/A | 0.761 | 0.949 | 0.613 | 2e-67 | |
| Q9BGI3 | 199 | Peroxiredoxin-2 OS=Bos ta | no | N/A | 0.757 | 0.939 | 0.611 | 4e-67 | |
| Q8K3U7 | 198 | Peroxiredoxin-2 OS=Cricet | no | N/A | 0.761 | 0.949 | 0.613 | 2e-66 | |
| Q5REY3 | 256 | Thioredoxin-dependent per | no | N/A | 0.910 | 0.878 | 0.521 | 2e-66 |
| >sp|Q13162|PRDX4_HUMAN Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 282 bits (722), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 130/192 (67%), Positives = 156/192 (81%), Gaps = 6/192 (3%)
Query: 45 DHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLA 104
DH + A + KPAPYW+GTAV+DG KE+KLTDYRGKYLVFFFYPLDFTFVCPTE++A
Sbjct: 71 DHSLHLSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIA 130
Query: 105 LNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI 164
++++EF I EVV SVDS FTH AWIN+ ++ L ++IPLLSDLTH+I
Sbjct: 131 FGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGL------GPIRIPLLSDLTHQI 184
Query: 165 SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEA 224
S+DYGVYLED GH+LRGLFIID +GI+RQITLNDLPVGRSV+ETLRLV+AFQYTD+HGE
Sbjct: 185 SKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEV 244
Query: 225 CPSGWQPGQRTI 236
CP+GW+PG TI
Sbjct: 245 CPAGWKPGSETI 256
|
Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation. Homo sapiens (taxid: 9606) EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 1EC: 5 |
| >sp|O08807|PRDX4_MOUSE Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (717), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 128/192 (66%), Positives = 155/192 (80%), Gaps = 6/192 (3%)
Query: 45 DHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLA 104
DH + A + KPAPYW+GTAV++G KE+KLTDYRGKYLVFFFYPLDFTFVCPTE++A
Sbjct: 74 DHSLHLSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIA 133
Query: 105 LNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI 164
++I+EF I EVV SVDS FTH AWIN+ ++ L ++IPLLSDL H+I
Sbjct: 134 FGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGL------GPIRIPLLSDLNHQI 187
Query: 165 SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEA 224
S+DYGVYLED GH+LRGLFIID +G++RQITLNDLPVGRSV+ETLRLV+AFQYTD+HGE
Sbjct: 188 SKDYGVYLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEV 247
Query: 225 CPSGWQPGQRTI 236
CP+GW+PG TI
Sbjct: 248 CPAGWKPGSETI 259
|
Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q9BGI2|PRDX4_BOVIN Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (715), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 129/192 (67%), Positives = 154/192 (80%), Gaps = 6/192 (3%)
Query: 45 DHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLA 104
+H + A + KPAPYW+GTAV++G KE+KLTDYRGKYLVFFFYPLDFTFVCPTE++A
Sbjct: 74 EHSLHLSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIA 133
Query: 105 LNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI 164
++IDEF I EVV SVDS FTH AWIN+ ++ L N IPLL+DL H+I
Sbjct: 134 FGDRIDEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGSIN------IPLLADLNHQI 187
Query: 165 SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEA 224
S+DYGVYLED GH+LRGLFIID +GI+RQITLNDLPVGRSV+ETLRLV+AFQYTD+HGE
Sbjct: 188 SKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEV 247
Query: 225 CPSGWQPGQRTI 236
CP+GW+PG TI
Sbjct: 248 CPAGWKPGSETI 259
|
Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q9Z0V5|PRDX4_RAT Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (714), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 128/192 (66%), Positives = 155/192 (80%), Gaps = 6/192 (3%)
Query: 45 DHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLA 104
DH + A + KPAPYW+GTAV++G KE+KLTDYRGKYLVFFFYPLDFTFVCPTE++A
Sbjct: 73 DHSLHLSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIA 132
Query: 105 LNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI 164
++I+EF I EVV SVDS FTH AWIN+ ++ L ++IPLLSDL H+I
Sbjct: 133 FGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGL------GPIRIPLLSDLNHQI 186
Query: 165 SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEA 224
S+DYGVYLED GH+LRGLFIID +G++RQITLNDLPVGRSV+ETLRLV+AFQYTD+HGE
Sbjct: 187 SKDYGVYLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEV 246
Query: 225 CPSGWQPGQRTI 236
CP+GW+PG TI
Sbjct: 247 CPAGWKPGSETI 258
|
Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|P35704|PRDX2_RAT Peroxiredoxin-2 OS=Rattus norvegicus GN=Prdx2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 256 bits (653), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 120/194 (61%), Positives = 151/194 (77%), Gaps = 6/194 (3%)
Query: 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDE 111
NA + KPAP + GTAVVDG KEIKL+DYRGKY+V FFYPLDFTFVCPTE++A ++ ++
Sbjct: 5 NAHIGKPAPDFTGTAVVDGAFKEIKLSDYRGKYVVLFFYPLDFTFVCPTEIIAFSDHAED 64
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVY 171
F K+G EV+GVSVDS FTH AWIN+ +K+ L L IPLL+D+T +S++YGV
Sbjct: 65 FRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGP------LNIPLLADVTKSLSQNYGVL 118
Query: 172 LEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQP 231
D+G + RGLFIID +G++RQIT+NDLPVGRSV+E LRLV+AFQYTDEHGE CP+GW+P
Sbjct: 119 KNDEGIAYRGLFIIDAKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKP 178
Query: 232 GQRTISNREEDEKE 245
G TI +D KE
Sbjct: 179 GSDTIKPNVDDSKE 192
|
Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system. It is not able to receive electrons from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2). Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q2PFZ3|PRDX2_MACFA Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 255 bits (651), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 119/194 (61%), Positives = 150/194 (77%), Gaps = 6/194 (3%)
Query: 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDE 111
NA + KPAP +K TAVVDG KE+KL+DY+GKY+V FFYPLDFTFVCPTE++A + + ++
Sbjct: 5 NARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAED 64
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVY 171
F K+G EV+GVSVDS FTH AWIN+ +K+ L L IPLL+D+T +S DYGV
Sbjct: 65 FRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGP------LNIPLLADVTRRLSEDYGVL 118
Query: 172 LEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQP 231
D+G + RGLFIID +G++RQIT+NDLPVGRSV+E LRLV+AFQYTDEHGE CP+GW+P
Sbjct: 119 KTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKP 178
Query: 232 GQRTISNREEDEKE 245
G TI +D KE
Sbjct: 179 GSDTIKPNVDDSKE 192
|
Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system. It is not able to receive electrons from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2). Macaca fascicularis (taxid: 9541) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|P32119|PRDX2_HUMAN Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5 | Back alignment and function description |
|---|
Score = 255 bits (651), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 119/194 (61%), Positives = 150/194 (77%), Gaps = 6/194 (3%)
Query: 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDE 111
NA + KPAP +K TAVVDG KE+KL+DY+GKY+V FFYPLDFTFVCPTE++A + + ++
Sbjct: 5 NARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAED 64
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVY 171
F K+G EV+GVSVDS FTH AWIN+ +K+ L L IPLL+D+T +S DYGV
Sbjct: 65 FRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGP------LNIPLLADVTRRLSEDYGVL 118
Query: 172 LEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQP 231
D+G + RGLFIID +G++RQIT+NDLPVGRSV+E LRLV+AFQYTDEHGE CP+GW+P
Sbjct: 119 KTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKP 178
Query: 232 GQRTISNREEDEKE 245
G TI +D KE
Sbjct: 179 GSDTIKPNVDDSKE 192
|
Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system. It is not able to receive electrons from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2). Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q9BGI3|PRDX2_BOVIN Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (649), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 118/193 (61%), Positives = 150/193 (77%), Gaps = 6/193 (3%)
Query: 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEF 112
A V KPAP ++ TAVVDG KE+KL+DY+GKY+V FFYPLDFTFVCPTE++A +++ EF
Sbjct: 7 AHVGKPAPEFQATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIVAFSDRAAEF 66
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYL 172
HK+ EV+GVSVDS FTH AWIN+ +K+ L L IPLL+D+T ++S DYGV
Sbjct: 67 HKLNCEVLGVSVDSQFTHLAWINTPRKEGGL------GPLNIPLLADVTRKLSSDYGVLK 120
Query: 173 EDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPG 232
ED+G + RGLF+ID +G++RQ+T+NDLPVGRSV+E LRLV+AFQYTDEHGE CP+GW PG
Sbjct: 121 EDEGIAYRGLFVIDGKGVLRQVTINDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWTPG 180
Query: 233 QRTISNREEDEKE 245
TI +D KE
Sbjct: 181 SDTIKPNVDDSKE 193
|
Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system. It is not able to receive electrons from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2). Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q8K3U7|PRDX2_CRIGR Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 252 bits (644), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 119/194 (61%), Positives = 148/194 (76%), Gaps = 6/194 (3%)
Query: 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDE 111
NA + KPAP + TAVVDG KE+KL+DYRGKY+V FFYPLDFTFVCPTE++A + ++
Sbjct: 5 NAHIGKPAPDFTATAVVDGAFKEVKLSDYRGKYVVLFFYPLDFTFVCPTEIIAFSNHAED 64
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVY 171
F K+G EV+GVSVDS FTH AWIN+ +K+ L L IPLL+D+T +S +YGV
Sbjct: 65 FRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGP------LNIPLLADVTRSLSENYGVL 118
Query: 172 LEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQP 231
D+G + RGLFIID +GI+RQIT+NDLPVGRSV+E LRLV+AFQYTDEHGE CP+GW+P
Sbjct: 119 KTDEGIAYRGLFIIDAKGILRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKP 178
Query: 232 GQRTISNREEDEKE 245
G TI +D KE
Sbjct: 179 GSDTIKPNVDDSKE 192
|
Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system. It is not able to receive electrons from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2). Cricetulus griseus (taxid: 10029) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q5REY3|PRDX3_PONAB Thioredoxin-dependent peroxide reductase, mitochondrial OS=Pongo abelii GN=PRDX3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (642), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 121/232 (52%), Positives = 157/232 (67%), Gaps = 7/232 (3%)
Query: 15 MSSSSMIRGMDTGSCSHTEM-CSFTDSPTKFDHREGWTNAVVMKPAPYWKGTAVVDGNIK 73
+S+++ +R G S T + CS + F + V + APY+KGTAVV+G K
Sbjct: 24 ISATAALRPAACGRTSLTNLLCSGSSQAKLFSTSSSYHAPAVTQHAPYFKGTAVVNGEFK 83
Query: 74 EIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAW 133
++ L D++GKYLV FFYPLDFTFVCPTE++A ++K +EFH + EVV VSVDSHF+H AW
Sbjct: 84 DLSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAW 143
Query: 134 INSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQ 193
IN+ +K+ L N I LLSDLT +ISRDYGV LE G +LRGLFIID G+++
Sbjct: 144 INTPRKNGGLGHMN------IALLSDLTKQISRDYGVLLEGSGLALRGLFIIDPNGVIKH 197
Query: 194 ITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKE 245
+++NDLPVGRSVEETLRLV+AFQY + HGE CP+ W P TI KE
Sbjct: 198 LSVNDLPVGRSVEETLRLVKAFQYVETHGEVCPANWTPDSPTIKPNPAASKE 249
|
Involved in redox regulation of the cell. Protects radical-sensitive enzymes from oxidative damage by a radical-generating system. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 247 | ||||||
| 193697661 | 245 | PREDICTED: peroxiredoxin-4-like [Acyrtho | 0.894 | 0.902 | 0.6 | 4e-76 | |
| 357617694 | 246 | putative peroxiredoxin [Danaus plexippus | 0.943 | 0.947 | 0.575 | 5e-76 | |
| 170051146 | 252 | peroxiredoxin-4 [Culex quinquefasciatus] | 0.923 | 0.904 | 0.579 | 9e-76 | |
| 225713470 | 236 | Peroxiredoxin-4 [Lepeophtheirus salmonis | 0.781 | 0.817 | 0.668 | 2e-75 | |
| 157105671 | 257 | peroxiredoxins, prx-1, prx-2, prx-3 [Aed | 0.910 | 0.875 | 0.593 | 3e-75 | |
| 389611229 | 247 | thioredoxin peroxidase 2 [Papilio polyte | 0.963 | 0.963 | 0.567 | 4e-75 | |
| 356713482 | 245 | peroxiredoxin [Litopenaeus vannamei] | 0.781 | 0.787 | 0.665 | 6e-75 | |
| 429326691 | 247 | peroxiredoxin [Coptotermes formosanus] | 0.773 | 0.773 | 0.675 | 8e-75 | |
| 158285485 | 258 | AGAP007543-PA [Anopheles gambiae str. PE | 0.931 | 0.891 | 0.561 | 9e-75 | |
| 403263674 | 271 | PREDICTED: peroxiredoxin-4 [Saimiri boli | 0.753 | 0.686 | 0.682 | 1e-74 |
| >gi|193697661|ref|XP_001949571.1| PREDICTED: peroxiredoxin-4-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 138/230 (60%), Positives = 176/230 (76%), Gaps = 9/230 (3%)
Query: 10 VILLYMSSSSM-IRGMDTGSCSHTEMCSFTDSPT--KFDHREGWTNAVVMKPAPYWKGTA 66
+IL+Y++ +++ I D C S S T +H+ +T A++ KPAP WKGTA
Sbjct: 5 LILVYLAMNTVDISNADEFKCKKFANGSVYPSSTIESTNHKLQYTKALISKPAPDWKGTA 64
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
V++G+++E+KL D+RGKYLVFFFYPLDFTFVCPTE+LA N++I+EF +I A VV SVDS
Sbjct: 65 VINGSLQELKLKDFRGKYLVFFFYPLDFTFVCPTEILAFNDRIEEFRRIDANVVAASVDS 124
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIID 186
HFTH AW+N+ +KD L L IPLLSD+TH+IS+DYGVYL D GHSLRGLFIID
Sbjct: 125 HFTHLAWVNTPRKDGGL------GNLSIPLLSDMTHKISKDYGVYLSDVGHSLRGLFIID 178
Query: 187 REGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPGQRTI 236
GI+RQIT+NDLPVGRSV+ETLRLV+AFQYTD HGE CP+ W+PG++TI
Sbjct: 179 NRGILRQITMNDLPVGRSVDETLRLVQAFQYTDMHGEVCPANWKPGEQTI 228
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357617694|gb|EHJ70934.1| putative peroxiredoxin [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 138/240 (57%), Positives = 180/240 (75%), Gaps = 7/240 (2%)
Query: 7 SLAVILLYMSSSSMIRGMDTGSC-SHTEMCSFTDSPTKFDHREGWTNAVVMKPAPYWKGT 65
+L +L+ + S S ++ SC S F + DH+ +T A++ KPAP W+ T
Sbjct: 5 TLLFVLVSLISQSSATLFESDSCYSFGSGNVFPGGARRIDHKLQFTKAMISKPAPEWEAT 64
Query: 66 AVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125
AVV+G I ++ L+ ++GKYLVFFFYPLDFTFVCPTE+LA +E+I+EF K+ EVV SVD
Sbjct: 65 AVVNGEITQLSLSSFKGKYLVFFFYPLDFTFVCPTEILAFSERIEEFRKLNTEVVACSVD 124
Query: 126 SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFII 185
SHFTH AWIN+ +K+ L K+KIPLLSDLTH I++DYGVYLED GH+LRGLFII
Sbjct: 125 SHFTHLAWINTPRKEGGL------GKIKIPLLSDLTHSIAKDYGVYLEDLGHTLRGLFII 178
Query: 186 DREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKE 245
D +GI+RQIT+NDLPVGRSV+ETLRLV+AFQYTD+HGE CP+GW+PGQ TI +++K+
Sbjct: 179 DDKGILRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGQDTIIPNPDEKKK 238
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170051146|ref|XP_001861632.1| peroxiredoxin-4 [Culex quinquefasciatus] gi|167872509|gb|EDS35892.1| peroxiredoxin-4 [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 289 bits (739), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 138/238 (57%), Positives = 177/238 (74%), Gaps = 10/238 (4%)
Query: 9 AVILLYMSSSSMIRGMDTGSCSHTEMCSFT---DSPTKFDHREGWTNAVVMKPAPYWKGT 65
AV + + SS +D GSC H+ + DH+ WT AV+ +PAP ++ T
Sbjct: 14 AVTFVCLPQSSASTQLDEGSC-HSFAGGHVYPQEDVRSADHKLQWTKAVISRPAPQFEAT 72
Query: 66 AVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125
AVV+G K+IKL+DYRGKYLVFFFYPLDFTFVCPTE+LA ++++ EF K+ AEV+ S+D
Sbjct: 73 AVVEGAFKKIKLSDYRGKYLVFFFYPLDFTFVCPTEILAFSDRVSEFKKLNAEVIAASID 132
Query: 126 SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFII 185
SHFTH AWIN+ +K+ L K N IPL+SD+TH I++DYGVYL+D GH+LRGLFII
Sbjct: 133 SHFTHLAWINTPRKEGGLGKIN------IPLVSDITHSIAKDYGVYLDDLGHTLRGLFII 186
Query: 186 DREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPGQRTISNREEDE 243
D GI+RQIT+NDLPVGRSV+ETLRLV+AFQYTD+HGE CP+GW+PGQ TI E++
Sbjct: 187 DDRGILRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGQDTIVPNPEEK 244
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|225713470|gb|ACO12581.1| Peroxiredoxin-4 [Lepeophtheirus salmonis] gi|290563010|gb|ADD38899.1| Peroxiredoxin-4 [Lepeophtheirus salmonis] | Back alignment and taxonomy information |
|---|
Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 135/202 (66%), Positives = 161/202 (79%), Gaps = 9/202 (4%)
Query: 46 HREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLAL 105
H WT A++ KPAP+WKGTAVV G +KE++L+DY+GKYLVFFFYPLDFTFVCPTE+LA
Sbjct: 35 HNLQWTKAMISKPAPFWKGTAVVKGEMKEVQLSDYKGKYLVFFFYPLDFTFVCPTEILAF 94
Query: 106 NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEIS 165
N++++EF KI EVV SVDSHFTH AW N +K+ L KL IPLLSDLTH IS
Sbjct: 95 NDRVEEFRKINTEVVACSVDSHFTHLAWTNLPRKEGGL------GKLNIPLLSDLTHSIS 148
Query: 166 RDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEAC 225
+DYGVYLE+ GH+LRGLFIID +GI+RQIT+NDLPVGRSV+ETLRLV+AFQYTD HGE C
Sbjct: 149 KDYGVYLEENGHTLRGLFIIDGKGILRQITMNDLPVGRSVDETLRLVQAFQYTDSHGEVC 208
Query: 226 PSGWQPGQRTISNREEDEKEEL 247
P GW+PG TI D KE++
Sbjct: 209 PCGWKPGSDTII---PDPKEKM 227
|
Source: Lepeophtheirus salmonis Species: Lepeophtheirus salmonis Genus: Lepeophtheirus Family: Caligidae Order: Siphonostomatoida Class: Maxillopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157105671|ref|XP_001648972.1| peroxiredoxins, prx-1, prx-2, prx-3 [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 140/236 (59%), Positives = 175/236 (74%), Gaps = 11/236 (4%)
Query: 13 LYMSSSSMIRGMDTGSCSHTEMCSFT---DSPTKFDHREGWTNAVVMKPAPYWKGTAVVD 69
L+ SS D GSC H+ + DH+ WT AV+ +PAP ++ TAVV+
Sbjct: 21 LFASSQQTASSNDEGSC-HSFAGGHVYPQEDVRSADHKLQWTKAVISRPAPNFEATAVVE 79
Query: 70 GNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129
G K+IKL+DYRGKYLVFFFYPLDFTFVCPTE+LA ++++ EF K+ AEV+ S+DSHFT
Sbjct: 80 GAFKKIKLSDYRGKYLVFFFYPLDFTFVCPTEILAFSDRVKEFKKLNAEVIAASIDSHFT 139
Query: 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREG 189
H AWIN+ +K+ L K N IPL+SD+TH I++DYGVYL+D GH+LRGLFIID G
Sbjct: 140 HLAWINTPRKEGGLGKIN------IPLVSDITHSIAKDYGVYLDDLGHTLRGLFIIDDRG 193
Query: 190 IVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPGQRTI-SNREEDEK 244
I+RQIT+NDLPVGRSV+ETLRLV+AFQYTD+HGE CP+GW+PGQ TI N EE K
Sbjct: 194 ILRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGQDTIVPNPEEKMK 249
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|389611229|dbj|BAM19226.1| thioredoxin peroxidase 2 [Papilio polytes] | Back alignment and taxonomy information |
|---|
Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 139/245 (56%), Positives = 179/245 (73%), Gaps = 7/245 (2%)
Query: 2 LKYGLSLAVILLYMSSSSMIRGMDTGSC-SHTEMCSFTDSPTKFDHREGWTNAVVMKPAP 60
+K S + +++ ++S ++ SC S F K DH+ +T A++ KPAP
Sbjct: 1 MKSIYSAIIFIIWSINTSNSSIFESDSCYSFGSGNVFPGGARKIDHKLQFTKAMISKPAP 60
Query: 61 YWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVV 120
W+ TAVV+G I ++ L+ ++GKYLVFFFYPLDFTFVCPTE+LA +E+I+EF KI EVV
Sbjct: 61 EWEATAVVNGEITQLSLSSFKGKYLVFFFYPLDFTFVCPTEILAFSERIEEFKKINTEVV 120
Query: 121 GVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLR 180
SVDSHFTH AWIN+ +K+ L K N IPLLSDLTH I++DYGVYLED GH+LR
Sbjct: 121 ACSVDSHFTHLAWINTPRKEGGLGKIN------IPLLSDLTHSIAKDYGVYLEDVGHTLR 174
Query: 181 GLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPGQRTISNRE 240
GLFIID +GI+RQIT+NDLPVGRSV+ETLRLV+AFQYTD HGE CP+GW+PGQ TI
Sbjct: 175 GLFIIDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDTIIPNP 234
Query: 241 EDEKE 245
++K+
Sbjct: 235 AEKKK 239
|
Source: Papilio polytes Species: Papilio polytes Genus: Papilio Family: Papilionidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|356713482|gb|AET36895.1| peroxiredoxin [Litopenaeus vannamei] | Back alignment and taxonomy information |
|---|
Score = 286 bits (732), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 164/200 (82%), Gaps = 7/200 (3%)
Query: 46 HREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLAL 105
H WT A++ KPAP W+GTAV+DG +E+KLTD+RGKYLVFFFYPLDFTFVCPTE+LA
Sbjct: 45 HSLQWTKAMISKPAPEWEGTAVIDGEFRELKLTDFRGKYLVFFFYPLDFTFVCPTEILAF 104
Query: 106 NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEIS 165
N++++EF K+ AEVV S+DSHFTH AW N+ +KD L KLKIPLLSD+TH+IS
Sbjct: 105 NDRVEEFRKMNAEVVACSIDSHFTHLAWTNTPRKDGG------LGKLKIPLLSDITHKIS 158
Query: 166 RDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEAC 225
RDYGV+LED+G +LRGLFIID +G++RQIT+NDLPVGRSV+ETLRLV+AFQ+TD+H E C
Sbjct: 159 RDYGVHLEDQGIALRGLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQFTDQHXEVC 218
Query: 226 PSGWQPGQRT-ISNREEDEK 244
P+GW+PG T I N EE K
Sbjct: 219 PAGWKPGDDTIIPNPEEKLK 238
|
Source: Litopenaeus vannamei Species: Litopenaeus vannamei Genus: Litopenaeus Family: Penaeidae Order: Decapoda Class: Malacostraca Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|429326691|gb|AFZ78681.1| peroxiredoxin [Coptotermes formosanus] | Back alignment and taxonomy information |
|---|
Score = 286 bits (731), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 133/197 (67%), Positives = 159/197 (80%), Gaps = 6/197 (3%)
Query: 40 SPTKFDHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCP 99
SP DH+ WT AV+ KPAP W+G+AV+ G K++KL+DY+GKYLV FYPLDFTFVCP
Sbjct: 41 SPKFIDHKLTWTKAVISKPAPDWEGSAVIRGEFKQLKLSDYKGKYLVLLFYPLDFTFVCP 100
Query: 100 TEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159
TE+LA N++I+EF KI EVV SVDSHFTH AW N+ +KD L KL IPLLSD
Sbjct: 101 TEILAFNDRIEEFRKINTEVVACSVDSHFTHHAWTNTPRKDGGL------GKLTIPLLSD 154
Query: 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTD 219
LT +IS+DYGV+LED GH+LRGLFIID GI+RQIT+N+LPVGRSV+ETLRLV+AFQYTD
Sbjct: 155 LTRKISQDYGVFLEDLGHALRGLFIIDGRGILRQITMNNLPVGRSVDETLRLVQAFQYTD 214
Query: 220 EHGEACPSGWQPGQRTI 236
EHGE CP+GW+PGQ TI
Sbjct: 215 EHGEVCPAGWKPGQETI 231
|
Source: Coptotermes formosanus Species: Coptotermes formosanus Genus: Coptotermes Family: Rhinotermitidae Order: Isoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158285485|ref|XP_308336.4| AGAP007543-PA [Anopheles gambiae str. PEST] gi|157020015|gb|EAA03983.5| AGAP007543-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 137/244 (56%), Positives = 180/244 (73%), Gaps = 14/244 (5%)
Query: 8 LAVILLYMSSSSMIRGMDTGSCSHTEMC-SF-------TDSPTKFDHREGWTNAVVMKPA 59
+A LL S + +++ D C SF ++P DH+ +T AV+ +PA
Sbjct: 13 VACCLLLFSFAIIVQEGDGAVADEPGSCHSFGGGHVYPQEAPRFVDHKLQYTKAVISRPA 72
Query: 60 PYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEV 119
P ++ TAVVDG K+IKL+DYRGKYLVFFFYPLDFTFVCPTE+LA +++++EF K+ AEV
Sbjct: 73 PAFEATAVVDGAFKKIKLSDYRGKYLVFFFYPLDFTFVCPTEILAFSDRVNEFKKLNAEV 132
Query: 120 VGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSL 179
+ S+DSHFTH AWIN+ +K+ L K N IPL+SD+TH IS+DYGV+L+D GH+L
Sbjct: 133 IAASIDSHFTHLAWINTPRKEGGLGKIN------IPLVSDITHSISKDYGVFLDDLGHTL 186
Query: 180 RGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPGQRTISNR 239
RGLFIID G++RQIT+NDLPVGRSV+ETLRLV+AFQYTD+HGE CP+GW+PGQ TI
Sbjct: 187 RGLFIIDDRGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGQDTIVPN 246
Query: 240 EEDE 243
E++
Sbjct: 247 PEEK 250
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|403263674|ref|XP_003924143.1| PREDICTED: peroxiredoxin-4 [Saimiri boliviensis boliviensis] | Back alignment and taxonomy information |
|---|
Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 131/192 (68%), Positives = 156/192 (81%), Gaps = 6/192 (3%)
Query: 45 DHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLA 104
DH + A + KPAPYW+GTAV+DG KE+KLTDYRGKYLVFFFYPLDFTFVCPTE++A
Sbjct: 71 DHSLHLSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIA 130
Query: 105 LNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI 164
++++EF I EVV SVDS FTH AWIN+ +K L ++IPLLSDLTH+I
Sbjct: 131 FGDRLEEFRAINTEVVACSVDSQFTHLAWINTPRKQGGL------GPIRIPLLSDLTHQI 184
Query: 165 SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEA 224
S+DYGVYLED GH+LRGLFIID +GI+RQITLNDLPVGRSV+ETLRLV+AFQYTD+HGE
Sbjct: 185 SKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEV 244
Query: 225 CPSGWQPGQRTI 236
CP+GW+PG TI
Sbjct: 245 CPAGWKPGSETI 256
|
Source: Saimiri boliviensis boliviensis Species: Saimiri boliviensis Genus: Saimiri Family: Cebidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 247 | ||||||
| UNIPROTKB|Q13162 | 271 | PRDX4 "Peroxiredoxin-4" [Homo | 0.910 | 0.830 | 0.576 | 6.1e-71 | |
| UNIPROTKB|E2RNL3 | 272 | PRDX4 "Uncharacterized protein | 0.910 | 0.827 | 0.580 | 7.7e-71 | |
| UNIPROTKB|F1SQ01 | 272 | PRDX4 "Uncharacterized protein | 0.753 | 0.683 | 0.671 | 8.9e-70 | |
| UNIPROTKB|Q9BGI2 | 274 | PRDX4 "Peroxiredoxin-4" [Bos t | 0.910 | 0.821 | 0.572 | 1.1e-69 | |
| MGI|MGI:1859815 | 274 | Prdx4 "peroxiredoxin 4" [Mus m | 0.753 | 0.678 | 0.666 | 1.4e-69 | |
| RGD|620043 | 273 | Prdx4 "peroxiredoxin 4" [Rattu | 0.753 | 0.681 | 0.666 | 1.4e-69 | |
| UNIPROTKB|F1NNS8 | 288 | PRDX4 "Uncharacterized protein | 0.753 | 0.645 | 0.671 | 2.4e-69 | |
| ZFIN|ZDB-GENE-030131-1096 | 260 | prdx4 "peroxiredoxin 4" [Danio | 0.753 | 0.715 | 0.656 | 8e-69 | |
| FB|FBgn0040308 | 242 | Jafrac2 "thioredoxin peroxidas | 0.947 | 0.966 | 0.573 | 1.3e-68 | |
| UNIPROTKB|F1SDX9 | 198 | PRDX2 "Peroxiredoxin-2" [Sus s | 0.761 | 0.949 | 0.623 | 4.7e-64 |
| UNIPROTKB|Q13162 PRDX4 "Peroxiredoxin-4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
Identities = 140/243 (57%), Positives = 174/243 (71%)
Query: 6 LSLAVILLYMSSSSMIRGMDTGSCSHT--EMCSFTDSPTKF----------DHREGWTNA 53
L L +LL++ + ++G +T T E C F + DH + A
Sbjct: 20 LLLLPLLLFLLPAGAVQGWETEERPRTREEECHFYAGGQVYPGEASRVSVADHSLHLSKA 79
Query: 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH 113
+ KPAPYW+GTAV+DG KE+KLTDYRGKYLVFFFYPLDFTFVCPTE++A ++++EF
Sbjct: 80 KISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFR 139
Query: 114 KIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLE 173
I EVV SVDS FTH AWIN+ ++ L ++IPLLSDLTH+IS+DYGVYLE
Sbjct: 140 SINTEVVACSVDSQFTHLAWINTPRRQGGL------GPIRIPLLSDLTHQISKDYGVYLE 193
Query: 174 DKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPGQ 233
D GH+LRGLFIID +GI+RQITLNDLPVGRSV+ETLRLV+AFQYTD+HGE CP+GW+PG
Sbjct: 194 DSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGS 253
Query: 234 RTI 236
TI
Sbjct: 254 ETI 256
|
|
| UNIPROTKB|E2RNL3 PRDX4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
Identities = 141/243 (58%), Positives = 172/243 (70%)
Query: 6 LSLAVILLYMSSSSMIRGMDTGSCSHT--EMCSF----------TDSPTKFDHREGWTNA 53
L L +LL++ + +RG + T E C F + DH + A
Sbjct: 21 LLLLPLLLFLLPTGALRGQEAEERPRTRQEECHFYAGGQVYPGEASRASPADHSLHHSKA 80
Query: 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH 113
+ KPAPYW+GTAV++G KE+KLTDYRGKYLVFFFYPLDFTFVCPTE++A ++I+EF
Sbjct: 81 KISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRIEEFK 140
Query: 114 KIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLE 173
I EVV SVDS FTH AWIN+ ++ L +KIPLLSDLTH+IS+DYGVYLE
Sbjct: 141 SINTEVVACSVDSQFTHLAWINTPRRQGGL------GPIKIPLLSDLTHQISKDYGVYLE 194
Query: 174 DKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPGQ 233
D GH+LRGLFIID +GI+RQITLNDLPVGRSV+ETLRLV+AFQYTD HGE CP+GW+PG
Sbjct: 195 DSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDRHGEVCPAGWKPGS 254
Query: 234 RTI 236
TI
Sbjct: 255 ETI 257
|
|
| UNIPROTKB|F1SQ01 PRDX4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 129/192 (67%), Positives = 155/192 (80%)
Query: 45 DHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLA 104
DH + A + KPAPYW+GTAV++G KE+KLTDYRGKYLVFFFYPLDFTFVCPTE++A
Sbjct: 72 DHSLHLSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIA 131
Query: 105 LNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI 164
++I+EF I EVV SVDS FTH AWIN+ ++ L ++IPLLSDL H+I
Sbjct: 132 FGDRIEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGL------GPIRIPLLSDLNHQI 185
Query: 165 SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEA 224
S+DYGVYLED GH+LRGLFIID +GI+RQITLNDLPVGRSV+ETLRLV+AFQYTD+HGE
Sbjct: 186 SKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEV 245
Query: 225 CPSGWQPGQRTI 236
CP+GW+PG TI
Sbjct: 246 CPAGWKPGSETI 257
|
|
| UNIPROTKB|Q9BGI2 PRDX4 "Peroxiredoxin-4" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 139/243 (57%), Positives = 171/243 (70%)
Query: 6 LSLAVILLYMSSSSMIRGMDTGSCSHT--EMCSFTDSPTKF----------DHREGWTNA 53
L L +LL++ + +RG + T E C F + +H + A
Sbjct: 23 LLLLPLLLFLLRAEAVRGFEAEERPRTREEECHFYAGGQVYPGEVSRVSVAEHSLHLSKA 82
Query: 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH 113
+ KPAPYW+GTAV++G KE+KLTDYRGKYLVFFFYPLDFTFVCPTE++A ++IDEF
Sbjct: 83 KISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRIDEFR 142
Query: 114 KIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLE 173
I EVV SVDS FTH AWIN+ ++ L N IPLL+DL H+IS+DYGVYLE
Sbjct: 143 SINTEVVACSVDSQFTHLAWINTPRRQGGLGSIN------IPLLADLNHQISKDYGVYLE 196
Query: 174 DKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPGQ 233
D GH+LRGLFIID +GI+RQITLNDLPVGRSV+ETLRLV+AFQYTD+HGE CP+GW+PG
Sbjct: 197 DSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGS 256
Query: 234 RTI 236
TI
Sbjct: 257 ETI 259
|
|
| MGI|MGI:1859815 Prdx4 "peroxiredoxin 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 128/192 (66%), Positives = 155/192 (80%)
Query: 45 DHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLA 104
DH + A + KPAPYW+GTAV++G KE+KLTDYRGKYLVFFFYPLDFTFVCPTE++A
Sbjct: 74 DHSLHLSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIA 133
Query: 105 LNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI 164
++I+EF I EVV SVDS FTH AWIN+ ++ L ++IPLLSDL H+I
Sbjct: 134 FGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGL------GPIRIPLLSDLNHQI 187
Query: 165 SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEA 224
S+DYGVYLED GH+LRGLFIID +G++RQITLNDLPVGRSV+ETLRLV+AFQYTD+HGE
Sbjct: 188 SKDYGVYLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEV 247
Query: 225 CPSGWQPGQRTI 236
CP+GW+PG TI
Sbjct: 248 CPAGWKPGSETI 259
|
|
| RGD|620043 Prdx4 "peroxiredoxin 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 128/192 (66%), Positives = 155/192 (80%)
Query: 45 DHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLA 104
DH + A + KPAPYW+GTAV++G KE+KLTDYRGKYLVFFFYPLDFTFVCPTE++A
Sbjct: 73 DHSLHLSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIA 132
Query: 105 LNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI 164
++I+EF I EVV SVDS FTH AWIN+ ++ L ++IPLLSDL H+I
Sbjct: 133 FGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGL------GPIRIPLLSDLNHQI 186
Query: 165 SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEA 224
S+DYGVYLED GH+LRGLFIID +G++RQITLNDLPVGRSV+ETLRLV+AFQYTD+HGE
Sbjct: 187 SKDYGVYLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEV 246
Query: 225 CPSGWQPGQRTI 236
CP+GW+PG TI
Sbjct: 247 CPAGWKPGSETI 258
|
|
| UNIPROTKB|F1NNS8 PRDX4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 129/192 (67%), Positives = 156/192 (81%)
Query: 45 DHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLA 104
DH + A + KPAPYW+GTAV++G KE+KLTDY GKYLVFFFYPLDFTFVCPTE++A
Sbjct: 88 DHSLHLSQAKISKPAPYWEGTAVINGEFKELKLTDYEGKYLVFFFYPLDFTFVCPTEIIA 147
Query: 105 LNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI 164
+++I+EF I EVV SVDS FTH AWIN+ +K L +KIPLLSDLTH+I
Sbjct: 148 FSDRIEEFRAINTEVVACSVDSKFTHLAWINTPRKQGGL------GPMKIPLLSDLTHQI 201
Query: 165 SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEA 224
S+DYGVYLED+GH+LRGLFIID + I+RQIT+NDLPVGRSV+ETLRLV+AFQYTD+HGE
Sbjct: 202 SKDYGVYLEDQGHALRGLFIIDDKRILRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEV 261
Query: 225 CPSGWQPGQRTI 236
CP+GW+PG TI
Sbjct: 262 CPAGWKPGSETI 273
|
|
| ZFIN|ZDB-GENE-030131-1096 prdx4 "peroxiredoxin 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 126/192 (65%), Positives = 158/192 (82%)
Query: 45 DHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLA 104
DH + A + KPAP+W+GTAV++G KE+KL+DY+GKYLVFFFYPLDFTFVCPTE++A
Sbjct: 60 DHSLHLSKAKISKPAPHWEGTAVINGEFKELKLSDYKGKYLVFFFYPLDFTFVCPTEIIA 119
Query: 105 LNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI 164
++++ EF I AEVV SVDS FTH AWIN+ +K L +KIPLLSDLTH+I
Sbjct: 120 FSDRVHEFQAINAEVVACSVDSQFTHLAWINTPRKQGGL------GPMKIPLLSDLTHQI 173
Query: 165 SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEA 224
S+DYGV+LED+GH+LRGLFIID +G++RQIT+NDLPVGRSV+ETLRLV+AFQYTD+HGE
Sbjct: 174 SKDYGVFLEDQGHTLRGLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEV 233
Query: 225 CPSGWQPGQRTI 236
CP+GW+PG TI
Sbjct: 234 CPAGWKPGSDTI 245
|
|
| FB|FBgn0040308 Jafrac2 "thioredoxin peroxidase 2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 141/246 (57%), Positives = 178/246 (72%)
Query: 1 MLKYGLSLAVILLYMSSSSMIRGMDTGSC-SHTEMCSFTDSPTKFDHREGWTNAVVMKPA 59
M KY L+V+LL + + D SC S + D P K DH+ +T AV+ KPA
Sbjct: 1 MSKY---LSVLLLSAALVGAAKPEDNESCYSFAGGSVYPDQP-KGDHQLQYTKAVISKPA 56
Query: 60 PYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEV 119
P ++GTAVV+ I ++ L+ Y GKY+V FYPLDFTFVCPTE++A +++I EF KI EV
Sbjct: 57 PQFEGTAVVNKEIVKLSLSQYLGKYVVLLFYPLDFTFVCPTEIIAFSDRIAEFKKIKTEV 116
Query: 120 VGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSL 179
+GVSVDSHFTH AWIN+ +K+ L +KIPLLSDLTH+IS+DYGVYLE GH+L
Sbjct: 117 IGVSVDSHFTHLAWINTPRKEGGL------GDVKIPLLSDLTHKISKDYGVYLESSGHAL 170
Query: 180 RGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPGQRTI-SN 238
RGLFIID+ G++RQIT+NDLPVGRSV+ET+RLV+AFQYTD HGE CP+GW+PG TI N
Sbjct: 171 RGLFIIDQTGVLRQITMNDLPVGRSVDETIRLVQAFQYTDTHGEVCPAGWRPGADTIVPN 230
Query: 239 REEDEK 244
EE K
Sbjct: 231 PEEKTK 236
|
|
| UNIPROTKB|F1SDX9 PRDX2 "Peroxiredoxin-2" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 121/194 (62%), Positives = 154/194 (79%)
Query: 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDE 111
NA + KPAP ++ TAVV+G KE+KL+DY+GKYLV FFYPLDFTFVCPTE++A +++ +E
Sbjct: 5 NAHIGKPAPEFQATAVVNGAFKEVKLSDYKGKYLVLFFYPLDFTFVCPTEIIAFSDRAEE 64
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVY 171
FH++G EV+GVSVDS FTH AWIN+ +K+ L LKIPLL+D+T +S DYGV
Sbjct: 65 FHQLGCEVLGVSVDSQFTHLAWINTPRKEGGL------GPLKIPLLADVTRNLSLDYGVL 118
Query: 172 LEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQP 231
ED+G + RGLFIID +G++RQIT+NDLPVGRSV+E LRLV+AFQYTDEHGE CP+GW+P
Sbjct: 119 KEDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKP 178
Query: 232 GQRTISNREEDEKE 245
G TI +D KE
Sbjct: 179 GSDTIKPNVDDSKE 192
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q96291 | BAS1A_ARATH | 1, ., 1, 1, ., 1, ., 1, 5 | 0.4639 | 0.7530 | 0.6992 | yes | N/A |
| O74887 | TSA1_SCHPO | 1, ., 1, 1, ., 1, ., 1, 5 | 0.5238 | 0.7408 | 0.9531 | yes | N/A |
| Q6ER94 | BAS1_ORYSJ | 1, ., 1, 1, ., 1, ., 1, 5 | 0.4514 | 0.7935 | 0.7509 | yes | N/A |
| Q13162 | PRDX4_HUMAN | 1, ., 1, 1, ., 1, ., 1, 5 | 0.6770 | 0.7530 | 0.6863 | yes | N/A |
| P30048 | PRDX3_HUMAN | 1, ., 1, 1, ., 1, ., 1, 5 | 0.5215 | 0.9109 | 0.8789 | no | N/A |
| P34760 | TSA1_YEAST | 1, ., 1, 1, ., 1, ., 1, 5 | 0.5181 | 0.7570 | 0.9540 | yes | N/A |
| Q9Z0V5 | PRDX4_RAT | 1, ., 1, 1, ., 1, ., 1, 5 | 0.6666 | 0.7530 | 0.6813 | yes | N/A |
| Q555L5 | PRDX4_DICDI | 1, ., 1, 1, ., 1, ., 1, 5 | 0.5497 | 0.7489 | 0.7142 | yes | N/A |
| Q9BGI2 | PRDX4_BOVIN | 1, ., 1, 1, ., 1, ., 1, 5 | 0.6718 | 0.7530 | 0.6788 | yes | N/A |
| Q5REY3 | PRDX3_PONAB | 1, ., 1, 1, ., 1, ., 1, 5 | 0.5215 | 0.9109 | 0.8789 | no | N/A |
| O08807 | PRDX4_MOUSE | 1, ., 1, 1, ., 1, ., 1, 5 | 0.6666 | 0.7530 | 0.6788 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 1.11.1.15 | 0.946 |
| 3rd Layer | 1.11.1 | 0.963 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 247 | |||
| cd03015 | 173 | cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, | 1e-103 | |
| COG0450 | 194 | COG0450, AhpC, Peroxiredoxin [Posttranslational mo | 7e-83 | |
| PTZ00253 | 199 | PTZ00253, PTZ00253, tryparedoxin peroxidase; Provi | 5e-70 | |
| TIGR03137 | 187 | TIGR03137, AhpC, peroxiredoxin | 2e-57 | |
| cd02971 | 140 | cd02971, PRX_family, Peroxiredoxin (PRX) family; c | 5e-56 | |
| PTZ00137 | 261 | PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provision | 5e-53 | |
| PRK15000 | 200 | PRK15000, PRK15000, peroxidase; Provisional | 1e-48 | |
| pfam00578 | 124 | pfam00578, AhpC-TSA, AhpC/TSA family | 9e-48 | |
| PRK10382 | 187 | PRK10382, PRK10382, alkyl hydroperoxide reductase | 4e-44 | |
| PRK13189 | 222 | PRK13189, PRK13189, peroxiredoxin; Provisional | 1e-40 | |
| cd03016 | 203 | cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-c | 2e-40 | |
| PRK13190 | 202 | PRK13190, PRK13190, putative peroxiredoxin; Provis | 2e-38 | |
| cd03018 | 149 | cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family | 4e-35 | |
| COG1225 | 157 | COG1225, Bcp, Peroxiredoxin [Posttranslational mod | 4e-33 | |
| PRK13191 | 215 | PRK13191, PRK13191, putative peroxiredoxin; Provis | 1e-31 | |
| cd03017 | 140 | cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bact | 1e-31 | |
| PRK13599 | 215 | PRK13599, PRK13599, putative peroxiredoxin; Provis | 6e-29 | |
| pfam08534 | 142 | pfam08534, Redoxin, Redoxin | 9e-15 | |
| cd03014 | 143 | cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family, | 1e-13 | |
| PRK09437 | 154 | PRK09437, bcp, thioredoxin-dependent thiol peroxid | 3e-11 | |
| pfam10417 | 40 | pfam10417, 1-cysPrx_C, C-terminal domain of 1-Cys | 6e-09 | |
| cd02966 | 116 | cd02966, TlpA_like_family, TlpA-like family; compo | 4e-07 | |
| PRK00522 | 167 | PRK00522, tpx, lipid hydroperoxide peroxidase; Pro | 4e-07 | |
| COG2077 | 158 | COG2077, Tpx, Peroxiredoxin [Posttranslational mod | 6e-06 | |
| PRK03147 | 173 | PRK03147, PRK03147, thiol-disulfide oxidoreductase | 3e-04 | |
| cd02970 | 149 | cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 fam | 5e-04 | |
| cd02968 | 142 | cd02968, SCO, SCO (an acronym for Synthesis of Cyt | 6e-04 | |
| COG1999 | 207 | COG1999, COG1999, Uncharacterized protein SCO1/Sen | 0.002 |
| >gnl|CDD|239313 cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Score = 297 bits (762), Expect = e-103
Identities = 103/179 (57%), Positives = 135/179 (75%), Gaps = 7/179 (3%)
Query: 55 VMKPAPYWKGTAVVDGN-IKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH 113
V K AP +K TAVV KEI L+DY+GK++V FFYPLDFTFVCPTE++A +++ +EF
Sbjct: 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFK 60
Query: 114 KIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLE 173
K+ AEV+GVS DSHF+H AW N+ +K+ L K + PLL+D +ISRDYGV E
Sbjct: 61 KLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGK------INFPLLADPKKKISRDYGVLDE 114
Query: 174 DKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPG 232
++G +LRG FIID EGI+R IT+NDLPVGRSV+ETLR++ A Q+ +EHGE CP+ W+PG
Sbjct: 115 EEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFVEEHGEVCPANWKPG 173
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure. Length = 173 |
| >gnl|CDD|223527 COG0450, AhpC, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 245 bits (628), Expect = 7e-83
Identities = 85/193 (44%), Positives = 130/193 (67%), Gaps = 7/193 (3%)
Query: 54 VVMKPAPYWKGTAVVDGNI-KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEF 112
++ K AP + AV+ G I +EI L+DY GK++V FFYP DFTFVCPTE++A ++ +EF
Sbjct: 4 LIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEF 63
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYL 172
K G EV+GVS DS F+H+AW ++++ + K +K P+++D EI+R YGV
Sbjct: 64 QKRGVEVIGVSTDSVFSHKAWKATIREAGGIGK------IKFPMIADPKGEIARAYGVLH 117
Query: 173 EDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPG 232
++G +LRG FIID +G++R I +N L +GR+V+E LR++ A Q+ +HGE CP+ W+PG
Sbjct: 118 PEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQFVAKHGEVCPANWKPG 177
Query: 233 QRTISNREEDEKE 245
+TI + +
Sbjct: 178 DKTIKPSPDLGEY 190
|
Length = 194 |
| >gnl|CDD|140280 PTZ00253, PTZ00253, tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Score = 213 bits (543), Expect = 5e-70
Identities = 86/195 (44%), Positives = 131/195 (67%), Gaps = 7/195 (3%)
Query: 52 NAVVMKPAPYWKGTAVV-DGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKID 110
+A + PAP ++ A++ +G+ K+I L+ Y+GK++V FFYPLDFTFVCPTE++ ++ +
Sbjct: 5 DAKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVK 64
Query: 111 EFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGV 170
F+++ EV+ S+DS + H W +K L + IP+L+D T I+R YGV
Sbjct: 65 RFNELNCEVLACSMDSEYAHLQWTLQERKKGGL------GTMAIPMLADKTKSIARSYGV 118
Query: 171 YLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQ 230
E++G + RGLFIID +G++RQIT+ND+PVGR+VEE LRL+ AFQ+ ++HGE CP+ W+
Sbjct: 119 LEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQFVEKHGEVCPANWK 178
Query: 231 PGQRTISNREEDEKE 245
G T+ KE
Sbjct: 179 KGDPTMKPDPNKSKE 193
|
Length = 199 |
| >gnl|CDD|211789 TIGR03137, AhpC, peroxiredoxin | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 2e-57
Identities = 73/178 (41%), Positives = 106/178 (59%), Gaps = 10/178 (5%)
Query: 60 PYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEV 119
+K TA +G E+ D +GK+ VFFFYP DFTFVCPTE+ L + E K+G EV
Sbjct: 9 KPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADNYAELKKLGVEV 68
Query: 120 VGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSL 179
VS D+HF H+AW D S + K+ P+L D T ++R++GV +E+ G +
Sbjct: 69 YSVSTDTHFVHKAW-----HDTS----EAIGKITYPMLGDPTGVLTRNFGVLIEEAGLAD 119
Query: 180 RGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEH-GEACPSGWQPGQRTI 236
RG F+ID EG+++ + ++D +GR E LR ++A QY H GE CP+ W+ G T+
Sbjct: 120 RGTFVIDPEGVIQAVEIHDNGIGRDASELLRKIKAAQYVAAHPGEVCPAKWKEGAETL 177
|
This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 187 |
| >gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 5e-56
Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 15/146 (10%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
+ + E+ L+D++GK++V FFYP DFT VC TE+ A + +EF K GAEV+GVSVDS
Sbjct: 7 LPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK---GHSLRGLF 183
F+H+AW L PLLSD E ++ YGV +E G + R F
Sbjct: 67 PFSHKAWAEKEG------------GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATF 114
Query: 184 IIDREGIVRQITLNDLPVGRSVEETL 209
IID +G +R + + LP GR+ EE L
Sbjct: 115 IIDPDGKIRYVEVEPLPTGRNAEELL 140
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a cysteine sulfenic acid intermediate. The second step of the reaction, the resolution of the intermediate, distinguishes the different types of PRXs. The presence or absence of a second cysteine (the resolving cysteine) classifies PRXs as either belonging to the 2-cys or 1-cys type. The resolving cysteine of 2-cys PRXs is either on the same chain (atypical) or on the second chain (typical) of a functional homodimer. Structural and motif analysis of this growing family supports the need for a new classification system. The peroxidase activity of PRXs is regulated in vivo by irreversible cysteine over-oxidation into a sulfinic acid, phosphorylation and limited proteolysis. Length = 140 |
| >gnl|CDD|173427 PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 5e-53
Identities = 77/198 (38%), Positives = 129/198 (65%), Gaps = 8/198 (4%)
Query: 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKI 109
T+++V K P +KGTA+++ ++ + +DY + Y + FYPLDFTFVCP+E+L +E++
Sbjct: 66 TSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERL 125
Query: 110 DEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYG 169
EF + G +V+GVSVDS F+H+AW K+ +++ + LK PL SD++ E+S+ +G
Sbjct: 126 KEFEERGVKVLGVSVDSPFSHKAW-----KELDVRQGG-VSPLKFPLFSDISREVSKSFG 179
Query: 170 VYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGW 229
+ L D+G S R ++D+ G+V+ + + DL +GRSV+ETLRL A Q+ ++ G CP W
Sbjct: 180 L-LRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQFAEKTGNVCPVNW 238
Query: 230 QPGQRTISNREEDEKEEL 247
+ G + + + K+ L
Sbjct: 239 KQGDQAMKPDSQSVKQYL 256
|
Length = 261 |
| >gnl|CDD|184962 PRK15000, PRK15000, peroxidase; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (402), Expect = 1e-48
Identities = 75/192 (39%), Positives = 121/192 (63%), Gaps = 11/192 (5%)
Query: 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYR----GKYLVFFFYPLDFTFVCPTEVLALNEKI 109
+V + AP + AV+ G+ + + +++ GK V FF+P+DFTFVCP+E++A +++
Sbjct: 3 LVTRQAPDFTAAAVL-GSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRY 61
Query: 110 DEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYG 169
+EF K G EVVGVS DS F H AW N+ + +K +++D+ EI + YG
Sbjct: 62 EEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGI------GPVKYAMVADVKREIQKAYG 115
Query: 170 VYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGW 229
+ D+G +LRG F+ID GIVR +NDLP+GR+++E LR+V A Q+ +EHG+ CP+ W
Sbjct: 116 IEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQFHEEHGDVCPAQW 175
Query: 230 QPGQRTISNREE 241
+ G+ ++ +
Sbjct: 176 EKGKEGMNASPD 187
|
Length = 200 |
| >gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 9e-48
Identities = 58/138 (42%), Positives = 83/138 (60%), Gaps = 16/138 (11%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG 116
AP ++ D + KE+ L+DY+GK++V FFYP DFT VC TE+ AL + +EF K+G
Sbjct: 3 DKAPDFELP---DLDGKEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFKKLG 59
Query: 117 AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG 176
EV+GVSVDS +H+ + L L PLLSD E+++ YGV E++G
Sbjct: 60 VEVLGVSVDSPESHKKFAEKL-------------GLPFPLLSDPDGEVAKAYGVLNEEEG 106
Query: 177 HSLRGLFIIDREGIVRQI 194
+LR F+ID +G +R I
Sbjct: 107 LALRTTFVIDPDGKIRYI 124
|
This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124 |
| >gnl|CDD|182423 PRK10382, PRK10382, alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (371), Expect = 4e-44
Identities = 66/183 (36%), Positives = 106/183 (57%), Gaps = 13/183 (7%)
Query: 56 MKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI 115
+KP +K A +G E+ D G++ VFFFYP DFTFVCPTE+ + + +E K+
Sbjct: 8 IKP---FKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL 64
Query: 116 GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK 175
G +V VS D+HFTH+AW +S + K+K ++ D T ++R++ ED+
Sbjct: 65 GVDVYSVSTDTHFTHKAWHSS---------SETIAKIKYAMIGDPTGALTRNFDNMREDE 115
Query: 176 GHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEH-GEACPSGWQPGQR 234
G + R F++D +GI++ I + +GR + LR ++A QY H GE CP+ W+ G+
Sbjct: 116 GLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEA 175
Query: 235 TIS 237
T++
Sbjct: 176 TLA 178
|
Length = 187 |
| >gnl|CDD|237297 PRK13189, PRK13189, peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 1e-40
Identities = 62/161 (38%), Positives = 99/161 (61%), Gaps = 9/161 (5%)
Query: 74 EIKLTD-YRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132
IKL D Y+GK+ V F +P DFT VC TE +A ++ DEF ++ E++G+S+D F+H
Sbjct: 26 PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIK 85
Query: 133 WINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG-HSLRGLFIIDREGIV 191
W+ + K+ +++ P+++D EI++ G+ KG +++R +FIID +GI+
Sbjct: 86 WVEWI-------KEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGII 138
Query: 192 RQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPG 232
R I VGR+++E LRLV+A Q +DE G A P+ W P
Sbjct: 139 RAILYYPQEVGRNMDEILRLVKALQTSDEKGVATPANWPPN 179
|
Length = 222 |
| >gnl|CDD|239314 cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 2e-40
Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 13/184 (7%)
Query: 68 VDGNIKEIKLTDYRG-KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
D IK DY G + + F +P DFT VC TE+ A + EF K +++G+SVDS
Sbjct: 10 ADTTHGPIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSL--RGLFI 184
+H WI ++ + ++ P+++D E+++ G+ D G +L R +FI
Sbjct: 70 VESHIKWIEDIE-------EYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFI 122
Query: 185 IDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPGQRTI---SNREE 241
ID + +R I GR+ +E LR+V A Q TD+H A P+ W+PG I S +E
Sbjct: 123 IDPDKKIRLILYYPATTGRNFDEILRVVDALQLTDKHKVATPANWKPGDDVIVPPSVSDE 182
Query: 242 DEKE 245
+ K+
Sbjct: 183 EAKK 186
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins. Length = 203 |
| >gnl|CDD|106159 PRK13190, PRK13190, putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-38
Identities = 59/162 (36%), Positives = 102/162 (62%), Gaps = 7/162 (4%)
Query: 75 IKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWI 134
I L+ Y+GK+++ F +P DFT VC TE +A + + ++F K+G E+VG+SVDS ++H AW+
Sbjct: 20 IDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWL 79
Query: 135 NSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQI 194
+++ + K+ P+++D+ E++R+Y + E+ G ++RG+FIID IVR +
Sbjct: 80 RDIEERFGI-------KIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWM 132
Query: 195 TLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPGQRTI 236
GR+++E +R+ +A Q + A P+ WQPGQ I
Sbjct: 133 IYYPAETGRNIDEIIRITKALQVNWKRKVATPANWQPGQEGI 174
|
Length = 202 |
| >gnl|CDD|239316 cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 4e-35
Identities = 55/129 (42%), Positives = 82/129 (63%), Gaps = 16/129 (12%)
Query: 67 VVDGNIKEIKLTDYRG-KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125
+ D N +E++L+++RG K +V F+PL FT VC E+ AL + ++ F GAEV+G+SVD
Sbjct: 12 LPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD 71
Query: 126 SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL-TH-EISRDYGVYLEDKGHSLRGLF 183
S F+ RAW ++N L PLLSD H E+++ YGV+ ED G + R +F
Sbjct: 72 SPFSLRAW----------AEENGLT---FPLLSDFWPHGEVAKAYGVFDEDLGVAERAVF 118
Query: 184 IIDREGIVR 192
+IDR+GI+R
Sbjct: 119 VIDRDGIIR 127
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. Length = 149 |
| >gnl|CDD|224146 COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 4e-33
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 20/150 (13%)
Query: 73 KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132
+ + L+D RGK +V +FYP DFT C TE + ++EF K+GA V+G+S DS +H+
Sbjct: 21 ETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKK 80
Query: 133 WINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGH------SLRGLFIID 186
+ +K L PLLSD E++ YGV+ E K + R F+ID
Sbjct: 81 FA---EKHG----------LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVID 127
Query: 187 REGIVRQITLNDLPVGRSVEETLRLVRAFQ 216
+G +R + + V +E L ++
Sbjct: 128 PDGKIRYV-WRKVKVKGHADEVLAALKKLA 156
|
Length = 157 |
| >gnl|CDD|183885 PRK13191, PRK13191, putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-31
Identities = 56/164 (34%), Positives = 97/164 (59%), Gaps = 9/164 (5%)
Query: 68 VDGNIKEIKLTD-YRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
V +IKL D Y+G++ V F +P DFT VC TE + +K +EF K+ E++G+SVDS
Sbjct: 18 VITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDS 77
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYG-VYLEDKGHSLRGLFII 185
+ +H W+ ++K+ LK + + P+++D +++ G ++ E ++R +FI+
Sbjct: 78 NISHIEWVMWIEKN--LKVE-----VPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIV 130
Query: 186 DREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGW 229
D +G VR I + +GR+++E LR +RA Q D+ G P+ W
Sbjct: 131 DDKGTVRLILYYPMEIGRNIDEILRAIRALQLVDKAGVVTPANW 174
|
Length = 215 |
| >gnl|CDD|239315 cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-31
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 17/145 (11%)
Query: 69 DGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128
D + + + L+D RGK +V +FYP D T C E + +EF +GA V+GVS DS
Sbjct: 10 DQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVE 69
Query: 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSL---RGLFII 185
+H + L PLLSD ++++ YGV+ E K + R F+I
Sbjct: 70 SHAKFAEKY-------------GLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLI 116
Query: 186 DREGIVRQITLNDLPVGRSVEETLR 210
D +G + ++ + EE L
Sbjct: 117 DPDGKIVKV-WRKVKPKGHAEEVLE 140
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth. Length = 140 |
| >gnl|CDD|106544 PRK13599, PRK13599, putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 6e-29
Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 79 DYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLK 138
DY GK+ V F +P DFT VC TE + K ++F ++ E++G+SVD F+H W+ +
Sbjct: 25 DYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWI- 83
Query: 139 KDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG-HSLRGLFIIDREGIVRQITLN 197
KDN + P+++D ++S G+ KG +++R +FI+D +G +R I
Sbjct: 84 ------KDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYY 137
Query: 198 DLPVGRSVEETLRLVRAFQYTDEHGEACPSGW 229
VGR+V+E LR ++A Q D++G A P W
Sbjct: 138 PQEVGRNVDEILRALKALQTADQYGVALPEKW 169
|
Length = 215 |
| >gnl|CDD|219888 pfam08534, Redoxin, Redoxin | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 9e-15
Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Query: 68 VDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV--D 125
V + K + L+D++GK +V F+P F C E L + + G +VV V+ D
Sbjct: 13 VALDGKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAKGVDVVAVNASND 72
Query: 126 SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFII 185
F W K+ LK P+L+D ++ YG+ D G F+I
Sbjct: 73 PFFVMNFW----AKEG----------LKYPVLADRDGAFTKAYGLTE-DAGLRTPRYFLI 117
Query: 186 DREGIVRQITLNDLPVGRS 204
D +G V + + P S
Sbjct: 118 DEDGKVVYLEVGPDPGDVS 136
|
This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142 |
| >gnl|CDD|239312 cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-13
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 66 AVVDGNIKEIKLTDYRGKYLVFFFYP-LDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV 124
+V ++ E+ L D+ GK V +P +D T VC T+ N++ + V+ +S
Sbjct: 10 TLVTSDLSEVSLADFAGKVKVISVFPSID-TPVCATQTKRFNKEAAKLDNT--VVLTISA 66
Query: 125 DSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL-THEISRDYGVYLEDKGHSLRGLF 183
D F + W + +D + LSD H + YGV ++D G R +F
Sbjct: 67 DLPFAQKRWCGA----------EGVDNVTT--LSDFRDHSFGKAYGVLIKDLGLLARAVF 114
Query: 184 IIDREGIVRQITLND 198
+ID G V + L
Sbjct: 115 VIDENGKVIYVELVP 129
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based interface (A-type for alternate), in contrast with the B-type interface of typical 2-cys and 1-cys PRXs. Length = 143 |
| >gnl|CDD|181857 PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-11
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 19/132 (14%)
Query: 69 DGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128
D + +++ LTD++G+ ++ +FYP T C + L + +DE K G V+G+S D
Sbjct: 17 DQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD--- 73
Query: 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK--GHSLRGL---- 182
K L + + L LLSD H+++ +GV+ E K G + G+
Sbjct: 74 ----------KPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRIS 123
Query: 183 FIIDREGIVRQI 194
F+ID +G + +
Sbjct: 124 FLIDADGKIEHV 135
|
Length = 154 |
| >gnl|CDD|220741 pfam10417, 1-cysPrx_C, C-terminal domain of 1-Cys peroxiredoxin | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 6e-09
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 214 AFQYTDEHGEACPSGWQPGQRTISNREEDEKE 245
A Q+TD+HG P+ W+PG + I E+E
Sbjct: 1 ALQFTDKHGVVTPANWKPGDKVIVPPPPTEEE 32
|
This is the C-terminal domain of 1-Cys peroxiredoxin (1-cysPrx), a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine, upstream of this domain; and glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulfide to the sulfhydryl and consequent activation of the enzyme. The domain is associated with family AhpC-TSA, pfam00578, which carries the catalytic cysteine. Length = 40 |
| >gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 4e-07
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 26/126 (20%)
Query: 73 KEIKLTDYRGKYLVFFFYPLDF--TF--VCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128
K + L+D +GK ++ ++F ++ C E+ L E+ G EVVGV+VD
Sbjct: 10 KPVSLSDLKGKVVL-----VNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD-D 63
Query: 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDRE 188
A LKK + P+L D E+++ YGV L F+IDR+
Sbjct: 64 DPAAVKAFLKK----------YGITFPVLLDPDGELAKAYGVR------GLPTTFLIDRD 107
Query: 189 GIVRQI 194
G +R
Sbjct: 108 GRIRAR 113
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116 |
| >gnl|CDD|179055 PRK00522, tpx, lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 4e-07
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 20/131 (15%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYP-LDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125
+V ++ ++ L D+ GK V +P +D T VC T V N++ E V+ +S D
Sbjct: 29 LVANDLSDVSLADFAGKRKVLNIFPSID-TGVCATSVRKFNQEAAELD--NTVVLCISAD 85
Query: 126 SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL-THEISRDYGVYLED---KGHSLRG 181
F + + + L+ + LSD H + YGV + + KG R
Sbjct: 86 LPFAQKRFCGA----------EGLENVI--TLSDFRDHSFGKAYGVAIAEGPLKGLLARA 133
Query: 182 LFIIDREGIVR 192
+F++D V
Sbjct: 134 VFVLDENNKVV 144
|
Length = 167 |
| >gnl|CDD|224988 COG2077, Tpx, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-06
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 20/137 (14%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYP-LDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125
+V ++ ++ L D+ GK V +P +D T VC T+V NE+ + V+ +S+D
Sbjct: 29 LVGKDLNDVSLADFAGKKKVISVFPSID-TPVCATQVRKFNEEAAKLG--NTVVLCISMD 85
Query: 126 SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT-HEISRDYGVYLED---KGHSLRG 181
F + + + +N + LSD +YGV + + G R
Sbjct: 86 LPFAQKRFCGAEGIEN------------VITLSDFRDRAFGENYGVLINEGPLAGLLARA 133
Query: 182 LFIIDREGIVRQITLND 198
+F++D G V L
Sbjct: 134 VFVLDENGKVTYSELVP 150
|
Length = 158 |
| >gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 32/145 (22%)
Query: 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFV--CPTEVLALNEKID 110
V K AP + + D K+I+L D +GK VF L+F T+ C E+ +NE
Sbjct: 37 VGKEAPNF---VLTDLEGKKIELKDLKGKG-VF----LNFWGTWCKPCEKEMPYMNELYP 88
Query: 111 EFHKIGAEVVGVSVD-SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYG 169
++ + G E++ V+VD + + ++N L P+ D ++ YG
Sbjct: 89 KYKEKGVEIIAVNVDETELAVKNFVNRY-------------GLTFPVAIDKGRQVIDAYG 135
Query: 170 VYLEDKGHSLRGLFIIDREGIVRQI 194
V L F+ID++G V ++
Sbjct: 136 V------GPLPTTFLIDKDGKVVKV 154
|
Length = 173 |
| >gnl|CDD|239268 cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 5e-04
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 39/123 (31%)
Query: 96 FVCP---TEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKL 152
F CP + AL++ + E +G E+V V +S L+ ++ L
Sbjct: 34 FGCPFCREYLRALSKLLPELDALGVELVAVGPESP-------------EKLEAFDKGKFL 80
Query: 153 KIPLLSDLTHEISRDYGVY---------------------LEDKGHSLR--GLFIIDREG 189
P+ +D ++ R G+ D+G L+ G+F+I +G
Sbjct: 81 PFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDG 140
Query: 190 IVR 192
+
Sbjct: 141 TIL 143
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. Length = 149 |
| >gnl|CDD|239266 cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 6e-04
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 68 VDGNIKEIKLTDYRGKY-LVFFFYPLDFTF---VCPTEVLALNEKIDEFHKIGAE---VV 120
D + + + L+D +GK LV+F Y T VCPT + L + + + G + VV
Sbjct: 8 TDQDGRPVTLSDLKGKPVLVYFGY----THCPDVCPTTLANLAQALKQLGADGGDDVQVV 63
Query: 121 GVSVD 125
+SVD
Sbjct: 64 FISVD 68
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II. Length = 142 |
| >gnl|CDD|224910 COG1999, COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.002
Identities = 46/156 (29%), Positives = 64/156 (41%), Gaps = 30/156 (19%)
Query: 56 MKPAPYWKGT-AVVDGNIKEIKLTDYRGKY-LVFFFYPLDFTF---VCPTEVLALN---E 107
A Y G + D + K L D +GK LVFF Y T VCPT + L +
Sbjct: 40 DAAAVYIGGDFELTDQDGKPFTLKDLKGKPSLVFFGY----THCPDVCPTTLAELKALLK 95
Query: 108 KIDEFHKIGAEVVGVSVDS-HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISR 166
K+ E +VV ++VD T LKK L D R L + E+++
Sbjct: 96 KLGEGEGDDVQVVFITVDPERDTPE----VLKKYAELNFDPRWIGLTGT--PEQIEEVAK 149
Query: 167 DYGVY-----LEDKG-----HSLRGLFIIDREGIVR 192
YGV+ L+D HS G ++ID +G
Sbjct: 150 AYGVFYSKVPLDDSQNYTIDHSA-GFYLIDADGRFL 184
|
Length = 207 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 247 | |||
| PRK15000 | 200 | peroxidase; Provisional | 100.0 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 100.0 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 100.0 | |
| COG0450 | 194 | AhpC Peroxiredoxin [Posttranslational modification | 100.0 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 100.0 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 100.0 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 100.0 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 100.0 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 100.0 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 100.0 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 100.0 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 100.0 | |
| KOG0852|consensus | 196 | 100.0 | ||
| COG1225 | 157 | Bcp Peroxiredoxin [Posttranslational modification, | 99.97 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 99.96 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 99.95 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 99.95 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 99.95 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 99.95 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 99.95 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 99.95 | |
| KOG0854|consensus | 224 | 99.94 | ||
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 99.93 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.93 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 99.93 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 99.92 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.92 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 99.91 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 99.91 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 99.91 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 99.91 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 99.91 | |
| PLN02412 | 167 | probable glutathione peroxidase | 99.91 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 99.91 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 99.9 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 99.9 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.89 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.88 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 99.88 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.88 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.87 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 99.87 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 99.87 | |
| KOG0855|consensus | 211 | 99.85 | ||
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 99.84 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.84 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.82 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 99.81 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.81 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.81 | |
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.81 | |
| COG2077 | 158 | Tpx Peroxiredoxin [Posttranslational modification, | 99.76 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.73 | |
| PF02630 | 174 | SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam | 99.72 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.71 | |
| COG1999 | 207 | Uncharacterized protein SCO1/SenC/PrrC, involved i | 99.66 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.49 | |
| COG0386 | 162 | BtuE Glutathione peroxidase [Posttranslational mod | 99.46 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.46 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.43 | |
| KOG2501|consensus | 157 | 99.36 | ||
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.36 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.32 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.31 | |
| KOG2792|consensus | 280 | 99.3 | ||
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.29 | |
| COG0678 | 165 | AHP1 Peroxiredoxin [Posttranslational modification | 99.27 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.25 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.22 | |
| KOG1651|consensus | 171 | 99.21 | ||
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.2 | |
| KOG0541|consensus | 171 | 99.18 | ||
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.15 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.13 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 99.11 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 99.1 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.1 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.1 | |
| KOG0910|consensus | 150 | 99.09 | ||
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.08 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.07 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.06 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.05 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.03 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 99.03 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.02 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.01 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.01 | |
| KOG0907|consensus | 106 | 99.01 | ||
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 98.97 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 98.96 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 98.96 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 98.93 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 98.93 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 98.91 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 98.91 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 98.9 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 98.89 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 98.86 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 98.84 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 98.82 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 98.81 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 98.81 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 98.81 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 98.8 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 98.8 | |
| PF00255 | 108 | GSHPx: Glutathione peroxidase; InterPro: IPR000889 | 98.79 | |
| PF00837 | 237 | T4_deiodinase: Iodothyronine deiodinase; InterPro: | 98.77 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 98.77 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 98.77 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 98.76 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 98.75 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 98.75 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.75 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 98.72 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 98.71 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.7 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 98.66 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 98.65 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 98.62 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 98.58 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 98.58 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 98.58 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 98.56 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 98.54 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 98.49 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 98.43 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 98.37 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 98.34 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.34 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 98.33 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 98.27 | |
| PF09695 | 160 | YtfJ_HI0045: Bacterial protein of unknown function | 98.24 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.2 | |
| PF05988 | 211 | DUF899: Bacterial protein of unknown function (DUF | 98.18 | |
| PF04592 | 238 | SelP_N: Selenoprotein P, N terminal region; InterP | 98.17 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 98.16 | |
| PF13911 | 115 | AhpC-TSA_2: AhpC/TSA antioxidant enzyme | 98.1 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 98.07 | |
| KOG0908|consensus | 288 | 98.06 | ||
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 98.03 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 98.0 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 98.0 | |
| PHA02125 | 75 | thioredoxin-like protein | 97.99 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 97.93 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 97.87 | |
| smart00594 | 122 | UAS UAS domain. | 97.84 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 97.83 | |
| PF05176 | 252 | ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th | 97.77 | |
| PF10417 | 40 | 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredox | 97.71 | |
| KOG4498|consensus | 197 | 97.7 | ||
| KOG0190|consensus | 493 | 97.58 | ||
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 97.52 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 97.23 | |
| COG4312 | 247 | Uncharacterized protein conserved in bacteria [Fun | 96.98 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 96.91 | |
| KOG1731|consensus | 606 | 96.76 | ||
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 96.75 | |
| COG3054 | 184 | Predicted transcriptional regulator [General funct | 96.72 | |
| PF13778 | 118 | DUF4174: Domain of unknown function (DUF4174) | 96.63 | |
| KOG0190|consensus | 493 | 96.59 | ||
| KOG0191|consensus | 383 | 96.53 | ||
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 96.51 | |
| KOG0912|consensus | 375 | 96.32 | ||
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 96.3 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 96.26 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 96.25 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 96.17 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 96.17 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 96.12 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 95.96 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 95.8 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 95.67 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 95.37 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 94.96 | |
| KOG0191|consensus | 383 | 94.54 | ||
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 94.53 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 94.31 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 94.15 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 94.14 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 93.64 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 93.35 | |
| KOG4277|consensus | 468 | 93.12 | ||
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 93.08 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 93.0 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 92.56 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 92.39 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 92.32 | |
| KOG3425|consensus | 128 | 92.21 | ||
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 91.72 | |
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 91.65 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 91.51 | |
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 91.47 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 91.32 | |
| PRK10638 | 83 | glutaredoxin 3; Provisional | 90.9 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 90.71 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 90.67 | |
| COG0695 | 80 | GrxC Glutaredoxin and related proteins [Posttransl | 90.49 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 89.19 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 89.16 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 89.12 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 88.9 | |
| cd02972 | 98 | DsbA_family DsbA family; consists of DsbA and DsbA | 88.83 | |
| PRK10824 | 115 | glutaredoxin-4; Provisional | 88.34 | |
| KOG0914|consensus | 265 | 88.28 | ||
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 88.05 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 87.76 | |
| PRK10954 | 207 | periplasmic protein disulfide isomerase I; Provisi | 86.28 | |
| cd02979 | 167 | PHOX_C FAD-dependent Phenol hydoxylase (PHOX) fami | 83.57 | |
| TIGR03765 | 105 | ICE_PFL_4695 integrating conjugative element prote | 82.32 | |
| COG1331 | 667 | Highly conserved protein containing a thioredoxin | 81.9 | |
| COG1651 | 244 | DsbG Protein-disulfide isomerase [Posttranslationa | 81.43 | |
| PF11072 | 142 | DUF2859: Protein of unknown function (DUF2859); In | 80.93 | |
| PF07976 | 169 | Phe_hydrox_dim: Phenol hydroxylase, C-terminal dim | 80.38 | |
| KOG0911|consensus | 227 | 80.26 | ||
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 80.18 |
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=261.75 Aligned_cols=187 Identities=41% Similarity=0.817 Sum_probs=166.4
Q ss_pred ccCCCCCCceeeeeecCCce---eEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 54 VVMKPAPYWKGTAVVDGNIK---EIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~---~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
.+|+++|+|+++++ .++|+ .++++++ +||++||+||++.|||+|+.|++.|++++++|+++|++||+||.|+.+.
T Consensus 3 ~vg~~aPdF~~~~~-~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~ 81 (200)
T PRK15000 3 LVTRQAPDFTAAAV-LGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFV 81 (200)
T ss_pred cCCCcCCCCEeecc-cCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 47999999999664 23445 4566666 7999999999888999999999999999999999999999999999998
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
++.|.+...+ ..|+.+++||+++|+++.+++.||+..++.|+..|++||||++|+|++.+.++.+.++++++++
T Consensus 82 ~~~w~~~~~~------~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eil 155 (200)
T PRK15000 82 HNAWRNTPVD------KGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEML 155 (200)
T ss_pred HHHHHhhHHH------hCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHH
Confidence 8898875433 4444457999999999999999999877778889999999999999999999999999999999
Q ss_pred HHHHhhhcccccCCccCCCCcCCCccccCCchhhhccC
Q psy15453 210 RLVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKEEL 247 (247)
Q Consensus 210 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (247)
+.|++++..+++++.||+||+||+++|.+.++..++|+
T Consensus 156 r~l~al~~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~ 193 (200)
T PRK15000 156 RMVDALQFHEEHGDVCPAQWEKGKEGMNASPDGVAKYL 193 (200)
T ss_pred HHHHHhhhHHhcCCCcCCCCCCCCceeccCHHHHHHHH
Confidence 99999999999999999999999999999999988874
|
|
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=257.43 Aligned_cols=184 Identities=35% Similarity=0.696 Sum_probs=167.4
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~ 132 (247)
..+|+++|+|+...+.+++...++|++|+||++||+|||++|||+|+.|++.|++++++|+++|+++|+||.|+.+.+++
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a 81 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA 81 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence 46899999999999888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 133 WINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
|.+.... +.+++||+++|+++.+++.||+..+..|+..|++||||++|+|++++....+.+++.+++++.|
T Consensus 82 ~~~~~~~---------~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l 152 (187)
T PRK10382 82 WHSSSET---------IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKI 152 (187)
T ss_pred HHHhhcc---------ccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 9986422 2367999999999999999999765556677999999999999999988888888999999999
Q ss_pred Hhhhccccc-CCccCCCCcCCCccccCCchhhhc
Q psy15453 213 RAFQYTDEH-GEACPSGWQPGQRTISNREEDEKE 245 (247)
Q Consensus 213 ~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 245 (247)
+++|+.+++ ++.||.||+||+.+|.+.+...++
T Consensus 153 ~alq~~~~~~g~~~p~~w~~~~~~~~~~~~~~~~ 186 (187)
T PRK10382 153 KAAQYVASHPGEVCPAKWKEGEATLAPSLDLVGK 186 (187)
T ss_pred HhhhhHhhcCCeEeCCCCCcCCcceecCHHHhcc
Confidence 999999998 799999999999999998775543
|
|
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=267.97 Aligned_cols=192 Identities=39% Similarity=0.791 Sum_probs=171.4
Q ss_pred cccccccCCCCCCceeeeeecCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 49 GWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 49 ~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
....+.+|+++|+|+++++.+++++.++|+++ +||++||+|||++|||+|+.|++.|++++++|+++|++|++||.|++
T Consensus 64 ~~~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~ 143 (261)
T PTZ00137 64 TVTSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSP 143 (261)
T ss_pred ccccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 44557899999999997655666778999998 89999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHH
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEE 207 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~ 207 (247)
+.+++|.+...+ ..|..+++||+++|+++.+++.||+..+ .|...|++||||++|+|++.+..+.+.++++++
T Consensus 144 ~~h~aw~~~~~~------~~g~~~l~fPlLsD~~~~iakayGv~~~-~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~e 216 (261)
T PTZ00137 144 FSHKAWKELDVR------QGGVSPLKFPLFSDISREVSKSFGLLRD-EGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDE 216 (261)
T ss_pred HHHHHHHhhhhh------hccccCcceEEEEcCChHHHHHcCCCCc-CCceecEEEEECCCCEEEEEEEeCCCCCCCHHH
Confidence 889999875322 3344468999999999999999999753 466789999999999999999888888999999
Q ss_pred HHHHHHhhhcccccCCccCCCCcCCCccccCCchhhhccC
Q psy15453 208 TLRLVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKEEL 247 (247)
Q Consensus 208 il~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (247)
+++.|+++|.++++++.||++|+||+++|.+.+...+||+
T Consensus 217 iLr~l~alq~~~~~g~~cPanW~~g~~~~~~~~~~~~~~~ 256 (261)
T PTZ00137 217 TLRLFDAVQFAEKTGNVCPVNWKQGDQAMKPDSQSVKQYL 256 (261)
T ss_pred HHHHHHHhchhhhcCCCcCCCCCcCCceecCCcccHHHHH
Confidence 9999999999999999999999999999999998888874
|
|
| >COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=247.32 Aligned_cols=186 Identities=45% Similarity=0.897 Sum_probs=174.6
Q ss_pred ccccCCCCCCceeeeeecCCc---eeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNI---KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G---~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
.+.+|+++|+|+.+++. .| .+++++++.||++||+|||+.+.++|+.|+..+++.|++|+++|++||+||.|+.+
T Consensus 2 ~~lIg~~aP~F~~~a~~--~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~f 79 (194)
T COG0450 2 MSLIGKKAPDFTANAVL--GGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVF 79 (194)
T ss_pred ccccCCcCCCcEEEEEe--cCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHH
Confidence 35789999999998874 34 49999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHH
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEET 208 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~i 208 (247)
++.+|.+...+ ..|+.+.+||++.|.+++++++||+..++.|...+.+|||||+|+|+++.+++.+.+++.+++
T Consensus 80 sH~aW~~~~~~------~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEi 153 (194)
T COG0450 80 SHKAWKATIRE------AGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEI 153 (194)
T ss_pred HHHHHHhcHHh------cCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHH
Confidence 99999998776 777777999999999999999999999888889999999999999999999999999999999
Q ss_pred HHHHHhhhcccccCCccCCCCcCCCccccCCchhhhcc
Q psy15453 209 LRLVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKEE 246 (247)
Q Consensus 209 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (247)
++.|+++|..+++++.||+||++|+.+|.+..+. .|+
T Consensus 154 lR~idAlq~~~~hg~vcPanW~~G~~~i~p~~~~-~~~ 190 (194)
T COG0450 154 LRVIDALQFVAKHGEVCPANWKPGDKTIKPSPDL-GEY 190 (194)
T ss_pred HHHHHHHHHHHHhCCCccCCCCCCCccccCCccc-hhh
Confidence 9999999999999999999999999999999887 554
|
|
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=255.57 Aligned_cols=190 Identities=45% Similarity=0.919 Sum_probs=169.6
Q ss_pred ccccCCCCCCceeeee-ecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhH
Q psy15453 52 NAVVMKPAPYWKGTAV-VDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTH 130 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~-~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~ 130 (247)
.+.+|+++|+|++.++ .+++|+.++|++++||++||+||+++||++|+.+++.|++++++|+++|++||+||.|+.++.
T Consensus 5 ~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~ 84 (199)
T PTZ00253 5 DAKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAH 84 (199)
T ss_pred ccccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHH
Confidence 4678999999998763 367889999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLR 210 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~ 210 (247)
..|...... ..+..+++||+++|+++++++.||+...+.|+..|++||||++|+|++.+.++.+.+++++++++
T Consensus 85 ~~~~~~~~~------~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~ 158 (199)
T PTZ00253 85 LQWTLQERK------KGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLR 158 (199)
T ss_pred HHHHhChHh------hCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHH
Confidence 887653321 22333579999999999999999998776677789999999999999999888889999999999
Q ss_pred HHHhhhcccccCCccCCCCcCCCccccCCchhhhccC
Q psy15453 211 LVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKEEL 247 (247)
Q Consensus 211 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (247)
.|++++..++++++||.||.||+++|.+.+...+|++
T Consensus 159 ~l~a~~~~~~~~~~cp~~w~~g~~~~~~~~~~~~~~~ 195 (199)
T PTZ00253 159 LLEAFQFVEKHGEVCPANWKKGDPTMKPDPNKSKEGF 195 (199)
T ss_pred HHHhhhhHHhcCCEeCCCCCcCCccccCChHHHHHHh
Confidence 9999999999999999999999999999998888764
|
|
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=251.79 Aligned_cols=182 Identities=34% Similarity=0.664 Sum_probs=160.8
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~ 132 (247)
+.+|+++|+|++.+ ..| .+++++++||++||+|++++|||+|+.|++.|++++++|+++|+++|+||.|+.+.+.+
T Consensus 2 ~~vG~~aP~F~~~~---~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~ 77 (202)
T PRK13190 2 VKLGQKAPDFTVNT---TKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIA 77 (202)
T ss_pred CCCCCCCCCcEEec---CCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 56899999999954 356 79999999998888766699999999999999999999999999999999999999889
Q ss_pred HHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 133 WINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
|.++... ..|. .++||+++|+++.+++.||+.....|..+|++||||++|+|++++.++...+++.+++++.|
T Consensus 78 w~~~~~~------~~g~-~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l 150 (202)
T PRK13190 78 WLRDIEE------RFGI-KIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRIT 150 (202)
T ss_pred HHHhHHH------hcCC-CceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 8876543 3333 36899999999999999999766566678999999999999999988888889999999999
Q ss_pred HhhhcccccCCccCCCCcCCCccccCCchhhhc
Q psy15453 213 RAFQYTDEHGEACPSGWQPGQRTISNREEDEKE 245 (247)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (247)
++++..+++++.||+||+||+++|.+.....++
T Consensus 151 ~~l~~~~~~~~~~p~~w~~g~~~~~~~~~~~~~ 183 (202)
T PRK13190 151 KALQVNWKRKVATPANWQPGQEGIVPAPSTLDE 183 (202)
T ss_pred HHhhhHHhcCCCcCCCCCcCCceecCCCCCHHH
Confidence 999999999999999999999999987765444
|
|
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=246.11 Aligned_cols=181 Identities=40% Similarity=0.768 Sum_probs=159.1
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHH
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAW 133 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~ 133 (247)
.+|+++|+|++.++.+++...+++++++||++||+|||++|||+|+.+++.|++++++|+++|++||+||.|+.+.+++|
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~ 82 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAW 82 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHH
Confidence 56999999999664344334789999999999999999999999999999999999999988999999999999888888
Q ss_pred HHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVR 213 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~ 213 (247)
.+.... ..+++|++++|++..+++.||+.....|+..|++||||++|+|++++.......++.+++++.|+
T Consensus 83 ~~~~~~---------~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 83 HDTSEA---------IGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred Hhhhhh---------ccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 775422 12578999999999999999998666666789999999999999999877777779999999999
Q ss_pred hhhccccc-CCccCCCCcCCCccccCCchhh
Q psy15453 214 AFQYTDEH-GEACPSGWQPGQRTISNREEDE 243 (247)
Q Consensus 214 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 243 (247)
+++...++ ++.||++|++|++++.+.+--.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (187)
T TIGR03137 154 AAQYVAAHPGEVCPAKWKEGAETLKPSLDLV 184 (187)
T ss_pred HhhhHHhcCCeeeCCCCCcCCccccCChHhh
Confidence 99999998 7999999999999999987633
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=246.85 Aligned_cols=183 Identities=31% Similarity=0.621 Sum_probs=159.3
Q ss_pred ccccCCCCCCceeeeeecCCceeEEc-CCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKL-TDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTH 130 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l-~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~ 130 (247)
.+.+|+++|+|++.+ .+|+ +++ ++++||++||+|+|++|||+|+.|++.|++++++|+++|++|++||.|+..++
T Consensus 6 ~~~iG~~aPdF~l~~---~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h 81 (215)
T PRK13191 6 IPLIGEKFPEMEVIT---THGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISH 81 (215)
T ss_pred cccCCCcCCCCEeec---CCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 567899999999954 4776 556 55899998887777999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC-CccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK-GHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~-g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
.+|.+..+. ..+. +.+||+++|+++.+++.||+..+.. +...|++||||++|+|++++.++.+.++++++++
T Consensus 82 ~aw~~~~~~------~~~~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eil 154 (215)
T PRK13191 82 IEWVMWIEK------NLKV-EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEIL 154 (215)
T ss_pred HHHHhhHHH------hcCC-CCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHH
Confidence 998875543 2233 6899999999999999999975433 4578999999999999999989999999999999
Q ss_pred HHHHhhhcccccCCccCCCCcC----CCccccCCchhhhc
Q psy15453 210 RLVRAFQYTDEHGEACPSGWQP----GQRTISNREEDEKE 245 (247)
Q Consensus 210 ~~l~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 245 (247)
+.|++++.++++++.||+||+| |+++|.+..+..+|
T Consensus 155 r~l~alq~~~~~~~~~P~~w~~~~~~g~~~~~~~~~~~~~ 194 (215)
T PRK13191 155 RAIRALQLVDKAGVVTPANWPNNELIGDKVINPAPRTIKD 194 (215)
T ss_pred HHHHHhhhhhhcCCCcCCCCCCCCCCCCceecCCCCCHHH
Confidence 9999999999999999999997 99999998774443
|
|
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=236.55 Aligned_cols=172 Identities=60% Similarity=1.101 Sum_probs=151.7
Q ss_pred cCCCCCCceeeeeec-CCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHH
Q psy15453 55 VMKPAPYWKGTAVVD-GNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAW 133 (247)
Q Consensus 55 ~G~~~P~f~l~~~~d-~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~ 133 (247)
+|+++|+|+++++.+ ++|+.++|++++||++||+||+++||++|+.+++.|++++++|+++|+.+++||.|+.+..+.|
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~ 80 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAW 80 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHH
Confidence 589999999976633 3448999999999999999999999999999999999999999999999999999998777778
Q ss_pred HHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVR 213 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~ 213 (247)
.+...+ .++..+++|++++|+++.+++.||+.....+...|++||||++|+|++.+++..+..++.+++++.|+
T Consensus 81 ~~~~~~------~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~ 154 (173)
T cd03015 81 RNTPRK------EGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLD 154 (173)
T ss_pred HHhhhh------hCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 775432 22223689999999999999999998766666789999999999999999887777788999999999
Q ss_pred hhhcccccCCccCCCCcCC
Q psy15453 214 AFQYTDEHGEACPSGWQPG 232 (247)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~ 232 (247)
.++...++++.||.+|.||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~ 173 (173)
T cd03015 155 ALQFVEEHGEVCPANWKPG 173 (173)
T ss_pred HhhhhhhcCCCcCCCCCCC
Confidence 9999999999999999998
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=245.01 Aligned_cols=183 Identities=34% Similarity=0.642 Sum_probs=159.5
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
..+.+|+++|+|+++++ +|+ ++++++ +||++||+|+|++|||+|..|++.|++++++|+++|++||+||.|+...
T Consensus 7 ~~~~vG~~aPdF~~~~~---~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~ 82 (222)
T PRK13189 7 RMPLIGDKFPEFEVKTT---HGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFS 82 (222)
T ss_pred ccccCCCcCCCcEeEcC---CCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHH
Confidence 35678999999999654 664 778774 9998888777799999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC-CccceeEEEEcCCCcEEEEEecCCCCCCCHHHH
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK-GHSLRGLFIIDREGIVRQITLNDLPVGRSVEET 208 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~-g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~i 208 (247)
+.+|.+.... ..|. +++||+++|.++.+++.||+..... +...|++||||++|+|+++++++.+.+++.+++
T Consensus 83 h~aw~~~~~~------~~g~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~ei 155 (222)
T PRK13189 83 HIKWVEWIKE------KLGV-EIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEI 155 (222)
T ss_pred HHHHHHhHHH------hcCc-CcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHH
Confidence 9999887543 3333 5799999999999999999875432 347899999999999999998888889999999
Q ss_pred HHHHHhhhcccccCCccCCCCcCCC----ccccCCchhhh
Q psy15453 209 LRLVRAFQYTDEHGEACPSGWQPGQ----RTISNREEDEK 244 (247)
Q Consensus 209 l~~l~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 244 (247)
++.|++++..+++++.||+||+||+ ++|.+......
T Consensus 156 lr~l~alq~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~ 195 (222)
T PRK13189 156 LRLVKALQTSDEKGVATPANWPPNDLIKDKVIVPPASSVE 195 (222)
T ss_pred HHHHHHhhhHhhcCcCcCCCCCCCCCCCCceeeCCCCCHH
Confidence 9999999999999999999999999 99988876443
|
|
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=239.66 Aligned_cols=176 Identities=32% Similarity=0.558 Sum_probs=154.4
Q ss_pred cCCCCCCceeeeeecCCceeEEcCCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHH
Q psy15453 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRG-KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAW 133 (247)
Q Consensus 55 ~G~~~P~f~l~~~~d~~G~~v~l~~~~g-k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~ 133 (247)
+|+++|+|++.+. +| .+++++++| |++||+|++++|||+|..+++.|++++++|+++|++|++||.|+.+++.+|
T Consensus 1 vG~~aP~F~~~~~---~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~ 76 (203)
T cd03016 1 LGDTAPNFEADTT---HG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKW 76 (203)
T ss_pred CcCCCCCeEEecC---CC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHH
Confidence 5899999999543 66 589999998 777776666999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC--CccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHH
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK--GHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRL 211 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~--g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~ 211 (247)
.+.... +.+ .+++||+++|+++.+++.||+..... +...|++||||++|+|++.+.++...+++.+++++.
T Consensus 77 ~~~i~~------~~~-~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~ 149 (203)
T cd03016 77 IEDIEE------YTG-VEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRV 149 (203)
T ss_pred HhhHHH------hcC-CCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHH
Confidence 886544 323 36899999999999999999875432 345689999999999999998888888999999999
Q ss_pred HHhhhcccccCCccCCCCcCCCccccCCch
Q psy15453 212 VRAFQYTDEHGEACPSGWQPGQRTISNREE 241 (247)
Q Consensus 212 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (247)
|++++..+++++.||+||+||+++|.+..-
T Consensus 150 l~~lq~~~~~~~~~p~~w~~g~~~~~~~~~ 179 (203)
T cd03016 150 VDALQLTDKHKVATPANWKPGDDVIVPPSV 179 (203)
T ss_pred HHHHhhHhhcCcCcCCCCCCCCceecCCCC
Confidence 999999999999999999999999988765
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=239.09 Aligned_cols=178 Identities=30% Similarity=0.566 Sum_probs=155.7
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHH
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAW 133 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~ 133 (247)
.+|+++|+|++. +.+|+.+.+++++||++||+|+|++|||+|..|++.|++++++|+++|+++|+||.|+.+++.+|
T Consensus 3 ~~Gd~aPdF~l~---t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w 79 (215)
T PRK13599 3 LLGEKFPSMEVV---TTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKW 79 (215)
T ss_pred CCCCCCCCCEeE---CCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence 689999999994 44888888899999988776666999999999999999999999999999999999999999998
Q ss_pred HHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCc-cceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGH-SLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~-~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
.+.++. ..+. +++||+++|+++.+++.||+.....+. ..|++||||++|+|++++.++...+++.+++++.|
T Consensus 80 ~~~i~~------~~~~-~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l 152 (215)
T PRK13599 80 VEWIKD------NTNI-AIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRAL 152 (215)
T ss_pred HHhHHH------hcCC-CCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHH
Confidence 876532 1122 579999999999999999986443332 57999999999999999988888889999999999
Q ss_pred HhhhcccccCCccCCCCcC----CCccccCCch
Q psy15453 213 RAFQYTDEHGEACPSGWQP----GQRTISNREE 241 (247)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~ 241 (247)
++++.+++++++||+||+| |+++|.+..-
T Consensus 153 ~~lq~~~~~~~~~p~~w~~~~~~g~~~~~~~~~ 185 (215)
T PRK13599 153 KALQTADQYGVALPEKWPNNYLIKDHVIVPPST 185 (215)
T ss_pred HHhhhhhhcCCCcCCCCCCCCCCCCcEEEcCCC
Confidence 9999999999999999999 9999987654
|
|
| >KOG0852|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=221.69 Aligned_cols=189 Identities=67% Similarity=1.157 Sum_probs=181.4
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~ 132 (247)
..+..++|+|+.+.++|+.-+.++|++|+||++++.|+|..+.-+|+.|+-++...+.+|++.|.+||++|+|+.+++.+
T Consensus 4 ~~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlA 83 (196)
T KOG0852|consen 4 EVVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLA 83 (196)
T ss_pred cccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhh
Confidence 34566779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 133 WINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
|+..-++ +.|+.++++|+++|.+.++++.||+..++.|...+..||||++|.++.+.++..+.+++++++++.+
T Consensus 84 W~ntprk------~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLv 157 (196)
T KOG0852|consen 84 WINTPRK------QGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLV 157 (196)
T ss_pred HhcCchh------hCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHH
Confidence 9999888 8888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCccCCCCcCCCccccCCchhhhccC
Q psy15453 213 RAFQYTDEHGEACPSGWQPGQRTISNREEDEKEEL 247 (247)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (247)
+++|.++++++.||++|.||.++|++.+++-|||.
T Consensus 158 qAfQ~td~~geVcPagW~pgs~tikp~~~~skeyf 192 (196)
T KOG0852|consen 158 QAFQFTDEHGEVCPAGWKPGSDTIKPDVKDSKEYF 192 (196)
T ss_pred HHHhhhhccCccccCCCCCCCcccCCCcchhHHHH
Confidence 99999999999999999999999999999999984
|
|
| >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=203.72 Aligned_cols=149 Identities=34% Similarity=0.543 Sum_probs=136.6
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhH
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTH 130 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~ 130 (247)
..+.+|+++|+|+| .|++|+.++|++++||++||+|+|..++|.|..|+..+++.+++|++.|++|||||.|+++++
T Consensus 2 ~~l~~G~~aPdF~L---p~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~ 78 (157)
T COG1225 2 MMLKVGDKAPDFEL---PDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSH 78 (157)
T ss_pred CcCCCCCcCCCeEe---ecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHH
Confidence 36889999999999 566999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCC------ccceeEEEEcCCCcEEEEEecCCCCCCC
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG------HSLRGLFIIDREGIVRQITLNDLPVGRS 204 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g------~~~p~~~lId~~G~v~~~~~~~~~~~~~ 204 (247)
++|.+++ +++|++|+|++++++++||+..++.. ...|++||||++|+|++++ .......+
T Consensus 79 ~~F~~k~-------------~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h 144 (157)
T COG1225 79 KKFAEKH-------------GLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGH 144 (157)
T ss_pred HHHHHHh-------------CCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe-cCCCCccc
Confidence 9999975 78999999999999999999876541 3679999999999999999 66677888
Q ss_pred HHHHHHHHHhhh
Q psy15453 205 VEETLRLVRAFQ 216 (247)
Q Consensus 205 ~~~il~~l~~l~ 216 (247)
.+++++.|+.+.
T Consensus 145 ~~~vl~~l~~l~ 156 (157)
T COG1225 145 ADEVLAALKKLA 156 (157)
T ss_pred HHHHHHHHHHhc
Confidence 999999998874
|
|
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-28 Score=189.41 Aligned_cols=145 Identities=40% Similarity=0.664 Sum_probs=127.5
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRG-KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHR 131 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~g-k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~ 131 (247)
+.+|+++|+|++ .+.+|+.+++++++| |++||+||+++||+.|+.+++.|++++++++++++++|+||.|+++.++
T Consensus 1 ~~~G~~~p~~~l---~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~ 77 (149)
T cd03018 1 LEVGDKAPDFEL---PDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLR 77 (149)
T ss_pred CCCCCcCCCcEe---cCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHH
Confidence 467999999999 455899999999999 9999999999999999999999999999999889999999999998888
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecCC--chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDLT--HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
+|.++. +.+|++++|.+ +.+++.||+.....++..|++||||++|+|++.+.+......+..++.
T Consensus 78 ~~~~~~-------------~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~ 144 (149)
T cd03018 78 AWAEEN-------------GLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYD 144 (149)
T ss_pred HHHHhc-------------CCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCCcccccchhHH
Confidence 888754 57999999987 999999999865445566799999999999999988876666677777
Q ss_pred HHHH
Q psy15453 210 RLVR 213 (247)
Q Consensus 210 ~~l~ 213 (247)
+.|+
T Consensus 145 ~~~~ 148 (149)
T cd03018 145 EALD 148 (149)
T ss_pred HHhh
Confidence 7665
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-27 Score=188.80 Aligned_cols=148 Identities=25% Similarity=0.399 Sum_probs=125.5
Q ss_pred ccccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCC-CCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 48 EGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF-TFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 48 ~~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~-Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
.....+.+|+++|+|++ .|.+|+.+++++++||++||+|| ++| ||+|+.|++.|+++++++. +++|++||.|+
T Consensus 13 ~~~~~~~~G~~~P~f~l---~~~~g~~v~l~~~~Gk~vvl~f~-~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~ 86 (167)
T PRK00522 13 VAGSLPQVGDKAPDFTL---VANDLSDVSLADFAGKRKVLNIF-PSIDTGVCATSVRKFNQEAAELD--NTVVLCISADL 86 (167)
T ss_pred eeCCCCCCCCCCCCeEE---EcCCCcEEehHHhCCCEEEEEEE-cCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCC
Confidence 34456789999999999 55699999999999999999999 655 9999999999999999983 89999999999
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcc-eeEEecC-CchHHHHhCCcccC---CCccceeEEEEcCCCcEEEEEecC-CC
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLK-IPLLSDL-THEISRDYGVYLED---KGHSLRGLFIIDREGIVRQITLND-LP 200 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~D~-~~~~~~~~~~~~~~---~g~~~p~~~lId~~G~v~~~~~~~-~~ 200 (247)
++.+++|.+++ +.. +++++|. ++.+++.||+.... .|+..|++||||++|+|++.+++. ..
T Consensus 87 ~~~~~~f~~~~-------------~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~ 153 (167)
T PRK00522 87 PFAQKRFCGAE-------------GLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEIT 153 (167)
T ss_pred HHHHHHHHHhC-------------CCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcC
Confidence 98889998853 344 7999995 56999999997543 466678999999999999999644 46
Q ss_pred CCCCHHHHHHHHHh
Q psy15453 201 VGRSVEETLRLVRA 214 (247)
Q Consensus 201 ~~~~~~~il~~l~~ 214 (247)
..++++++++.|++
T Consensus 154 ~~~~~~~~l~~l~~ 167 (167)
T PRK00522 154 NEPDYDAALAALKA 167 (167)
T ss_pred CCCCHHHHHHHhhC
Confidence 67789999988763
|
|
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-27 Score=186.09 Aligned_cols=146 Identities=26% Similarity=0.438 Sum_probs=124.0
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhH
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTH 130 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~ 130 (247)
..+.+|+++|+|+++ |.+|+.+++++++||++||+||++.|||+|+.+++.|++++++++++++++|+|+.|+.++.
T Consensus 2 ~~~~~g~~~p~f~l~---~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~ 78 (154)
T PRK09437 2 NPLKAGDIAPKFSLP---DQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKL 78 (154)
T ss_pred CcCCCCCcCCCcEee---CCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHH
Confidence 357889999999994 55999999999999999999996678999999999999999999999999999999999998
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC--C----ccceeEEEEcCCCcEEEEEecCCCCCCC
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK--G----HSLRGLFIIDREGIVRQITLNDLPVGRS 204 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~--g----~~~p~~~lId~~G~v~~~~~~~~~~~~~ 204 (247)
.+|.++. +.+|+++.|+++.+.+.||+..... + ...|++||||++|+|++.+.+... ...
T Consensus 79 ~~~~~~~-------------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~-~~~ 144 (154)
T PRK09437 79 SRFAEKE-------------LLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKT-SNH 144 (154)
T ss_pred HHHHHHh-------------CCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCc-chh
Confidence 9988854 5789999999999999999874321 1 123789999999999999966543 445
Q ss_pred HHHHHHHHH
Q psy15453 205 VEETLRLVR 213 (247)
Q Consensus 205 ~~~il~~l~ 213 (247)
.+++++.++
T Consensus 145 ~~~~~~~~~ 153 (154)
T PRK09437 145 HDVVLDYLK 153 (154)
T ss_pred HHHHHHHHh
Confidence 777777765
|
|
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-27 Score=183.26 Aligned_cols=140 Identities=28% Similarity=0.436 Sum_probs=120.1
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHH
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAW 133 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~ 133 (247)
++|+++|+|++ .+.+|+.++|++++||++||+||++.|||+|+.+++.|++++++++ ++.||+||.|..+.+++|
T Consensus 1 ~~G~~aP~f~l---~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~ 75 (143)
T cd03014 1 KVGDKAPDFTL---VTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRW 75 (143)
T ss_pred CCCCCCCCcEE---ECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHH
Confidence 36899999999 4559999999999999999999955558999999999999999984 899999999998888999
Q ss_pred HHHhhccccccccCCCCCcceeEEecCC-chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC-CCCCCHHHHHH
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIPLLSDLT-HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL-PVGRSVEETLR 210 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~-~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~-~~~~~~~~il~ 210 (247)
.+++. ..+|++++|+. +.+.+.||+.....|...|++||||++|+|++.+.+.. ...++++++++
T Consensus 76 ~~~~~------------~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~~ 142 (143)
T cd03014 76 CGAEG------------VDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAALA 142 (143)
T ss_pred HHhcC------------CCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHhh
Confidence 88541 13789999996 99999999987666667899999999999999998654 45677777764
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-27 Score=184.36 Aligned_cols=133 Identities=28% Similarity=0.461 Sum_probs=114.8
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCC-CCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHH
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLD-FTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~-~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~ 132 (247)
++|+++|+|++++ .+.+|+++++++++||++||+|| ++ |||+|+.++|.|++++++|+++++.+++|+.+......+
T Consensus 1 k~G~~~P~~~~~~-~~~~g~~~~l~~~~gk~~vv~f~-~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~ 78 (146)
T PF08534_consen 1 KVGDKAPDFSLKD-LDLDGKPVSLSDFKGKPVVVNFW-ASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVRE 78 (146)
T ss_dssp STTSB--CCEEEE-EETTSEEEEGGGGTTSEEEEEEE-STTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHH
T ss_pred CCCCCCCCeEEEe-ecCCCCEecHHHhCCCeEEEEEE-ccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHH
Confidence 5799999999854 24699999999999999999999 77 999999999999999999999999999999988777888
Q ss_pred HHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC---CccceeEEEEcCCCcEEEEEecCCCC
Q psy15453 133 WINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK---GHSLRGLFIIDREGIVRQITLNDLPV 201 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~---g~~~p~~~lId~~G~v~~~~~~~~~~ 201 (247)
|.++. +.+|+++.|+++.+.+.|++..... |+.+|+++|||++|+|++.+.+..+.
T Consensus 79 ~~~~~-------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~ 137 (146)
T PF08534_consen 79 FLKKY-------------GINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDPD 137 (146)
T ss_dssp HHHHT-------------TTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBTT
T ss_pred HHHhh-------------CCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCCC
Confidence 77753 6799999999999999999864332 34789999999999999999887763
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-27 Score=178.20 Aligned_cols=124 Identities=30% Similarity=0.554 Sum_probs=113.8
Q ss_pred cCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHH
Q psy15453 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWI 134 (247)
Q Consensus 55 ~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~ 134 (247)
+|+++|+|++ .+.+|+.++|++++||++||+||+++|||+|..+++.|++++++|+++++++++|+.|+.++++.|.
T Consensus 1 vG~~~P~f~l---~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 77 (124)
T PF00578_consen 1 VGDKAPDFTL---TDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFL 77 (124)
T ss_dssp TTSBGGCEEE---ETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHH
T ss_pred CcCCCCCcEe---ECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhh
Confidence 6999999999 5669999999999999999999955599999999999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEE
Q psy15453 135 NSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQI 194 (247)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~ 194 (247)
+.. +.+|+++.|.++.+.+.|++.........|++||||++|+|+|.
T Consensus 78 ~~~-------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 78 EEY-------------GLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHH-------------TCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hhh-------------ccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 875 58999999999999999999866555578999999999999974
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=179.78 Aligned_cols=136 Identities=33% Similarity=0.488 Sum_probs=118.3
Q ss_pred CCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHH
Q psy15453 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINS 136 (247)
Q Consensus 57 ~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~ 136 (247)
+++|+|++ .|.+|+.+++++++||++||+||+++|||+|+.+++.|++++++++++++++|+|+.|+++...+|.+.
T Consensus 1 ~~~p~f~l---~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 77 (140)
T cd03017 1 DKAPDFTL---PDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEK 77 (140)
T ss_pred CCCCCccc---cCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 46899999 555899999999999999999998899999999999999999999988999999999999888888885
Q ss_pred hhccccccccCCCCCcceeEEecCCchHHHHhCCcccC---CCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 137 LKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLED---KGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~---~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
. +.+|++++|+++.+++.||+.... .+...|++||||++|+|++.+.|.. ...++++++
T Consensus 78 ~-------------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~-~~~~~~~~~ 139 (140)
T cd03017 78 Y-------------GLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVK-PKGHAEEVL 139 (140)
T ss_pred h-------------CCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCC-ccchHHHHh
Confidence 4 578999999999999999988431 1233499999999999999997666 566677765
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >KOG0854|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-26 Score=175.86 Aligned_cols=178 Identities=28% Similarity=0.546 Sum_probs=158.1
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk-~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
..+..|+.+|+|+..+ .-..+.++|+.|. +.||+-.|+.+.|+|..|+-++.+++.+|.++|+.+|+.|+|..++
T Consensus 4 ~~l~lgd~~PNfea~T----t~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ves 79 (224)
T KOG0854|consen 4 PRLRLGDTVPNFEADT----TVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVES 79 (224)
T ss_pred CcccccCcCCCccccc----cccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHH
Confidence 4678999999999643 3347999999865 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccCCCCC--cceeEEecCCchHHHHhCCcccCC------CccceeEEEEcCCCcEEEEEecCCCC
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDK--LKIPLLSDLTHEISRDYGVYLEDK------GHSLRGLFIIDREGIVRQITLNDLPV 201 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~~~~~~~~~~~~~~~------g~~~p~~~lId~~G~v~~~~~~~~~~ 201 (247)
++.|++.++. +....+ ++||++.|++++++-.|+....+. |...++.||||++.+|+-.+.++..+
T Consensus 80 H~~Wi~DIks------~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~tt 153 (224)
T KOG0854|consen 80 HKDWIKDIKS------YAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTT 153 (224)
T ss_pred HHHHHHHHHH------HHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEccccc
Confidence 9999998865 333323 899999999999999999874432 45678999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcccccCCccCCCCcCCCccccC
Q psy15453 202 GRSVEETLRLVRAFQYTDEHGEACPSGWQPGQRTISN 238 (247)
Q Consensus 202 ~~~~~~il~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (247)
+++.+|+++.|++||.++++++++|.||+||+.+|+.
T Consensus 154 GRN~dEiLRvidsLqlt~~k~VaTP~nWkpg~~vmil 190 (224)
T KOG0854|consen 154 GRNFDEILRVIDSLQLTDKKGVATPVNWKPGDKVMIL 190 (224)
T ss_pred CcCHHHHHHHHHHHhhhcccccccccccCCCCceEEc
Confidence 9999999999999999999999999999999998763
|
|
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-25 Score=170.95 Aligned_cols=134 Identities=46% Similarity=0.793 Sum_probs=115.8
Q ss_pred CCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHh
Q psy15453 58 PAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSL 137 (247)
Q Consensus 58 ~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~ 137 (247)
.+|+|++ .|.+|+++++++++||++||+||+++||++|..+++.|++++++|++.++++++|+.|+++...+|.++.
T Consensus 1 ~~p~f~l---~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 1 KAPDFTL---PATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCCcee---ccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 4799999 4558999999999999999999999999999999999999999998889999999999988888888743
Q ss_pred hccccccccCCCCCcceeEEecCCchHHHHhCCcccCC---CccceeEEEEcCCCcEEEEEecCCCCCCCHH
Q psy15453 138 KKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK---GHSLRGLFIIDREGIVRQITLNDLPVGRSVE 206 (247)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~---g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~ 206 (247)
. +.+|++++|+++.+++.||+..... +...|++||||++|+|++.+.+........+
T Consensus 78 ~------------~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~~~~~~~ 137 (140)
T cd02971 78 G------------GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLPTGRNAE 137 (140)
T ss_pred c------------CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCCCCcChH
Confidence 1 4689999999999999999885432 3456899999999999999988777444433
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-25 Score=179.90 Aligned_cols=124 Identities=24% Similarity=0.359 Sum_probs=103.6
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC-ChHh
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD-SHFT 129 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d-~~~~ 129 (247)
...+|+++|+|+++++ +++|+.++++++ +||++||+|| ++||++|+.++|.|+++++ ++++|++|+.+ +.++
T Consensus 38 ~~~~g~~~p~f~l~~~-~g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l~~----~~~~vi~v~~~~~~~~ 111 (185)
T PRK15412 38 SALIGKPVPKFRLESL-ENPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLSA----QGIRVVGMNYKDDRQK 111 (185)
T ss_pred hhhcCCCCCCcCCccC-CCCCccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHH----cCCEEEEEECCCCHHH
Confidence 3567999999999665 333678887776 7999999999 9999999999999988753 48999999975 4566
Q ss_pred HHHHHHHhhccccccccCCCCCccee-EEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIP-LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
..+|.++. +.+|+ ++.|+++.+.+.||+. .+|++|+||++|+|++.+.|..+
T Consensus 112 ~~~~~~~~-------------~~~~~~~~~D~~~~~~~~~gv~------~~P~t~vid~~G~i~~~~~G~~~ 164 (185)
T PRK15412 112 AISWLKEL-------------GNPYALSLFDGDGMLGLDLGVY------GAPETFLIDGNGIIRYRHAGDLN 164 (185)
T ss_pred HHHHHHHc-------------CCCCceEEEcCCccHHHhcCCC------cCCeEEEECCCceEEEEEecCCC
Confidence 77777753 56787 4789999999999998 88999999999999999988765
|
|
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=172.65 Aligned_cols=135 Identities=31% Similarity=0.454 Sum_probs=116.3
Q ss_pred cCCCCCCceeeeeecCCceeEEcCC-CCCCeEEEEEEeCCCCCCcHHH-HHHHHHHHHHHHhcCc-EEEEEeCCChHhHH
Q psy15453 55 VMKPAPYWKGTAVVDGNIKEIKLTD-YRGKYLVFFFYPLDFTFVCPTE-VLALNEKIDEFHKIGA-EVVGVSVDSHFTHR 131 (247)
Q Consensus 55 ~G~~~P~f~l~~~~d~~G~~v~l~~-~~gk~vvl~F~~a~~Cp~C~~~-~~~l~~l~~~~~~~~~-~vl~Vs~d~~~~~~ 131 (247)
+|+++|+|++++..+++|+.++|++ ++||++||+|+|+.|||+|..| ++.+++.+++|+++|+ +|++||.|+++.++
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~ 80 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK 80 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence 5899999999665333589999999 5999999999999999999999 9999999999999999 69999999999999
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC--Cc---cceeEEEEcCCCcEEEEEecCCCC
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK--GH---SLRGLFIIDREGIVRQITLNDLPV 201 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~--g~---~~p~~~lId~~G~v~~~~~~~~~~ 201 (247)
+|.++.. + ..+|++++|+++++++.||+..++. |. ..+.+|||| +|+|+++++...+.
T Consensus 81 ~~~~~~~----------~-~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~~~ 143 (155)
T cd03013 81 AWGKALG----------A-KDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEEDPG 143 (155)
T ss_pred HHHHhhC----------C-CCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEecCCC
Confidence 9998651 1 1389999999999999999986653 32 468999999 69999999766553
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-24 Score=172.56 Aligned_cols=151 Identities=22% Similarity=0.270 Sum_probs=122.4
Q ss_pred CCCCCCceeeeeecCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC--------
Q psy15453 56 MKPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS-------- 126 (247)
Q Consensus 56 G~~~P~f~l~~~~d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~-------- 126 (247)
|+++|+|++ .+.+|+.++++++ +||++||+|| ++|||.|..+++.|.+++++|+++++++|+|+.|+
T Consensus 1 g~~~p~f~l---~~~~g~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~ 76 (171)
T cd02969 1 GSPAPDFSL---PDTDGKTYSLADFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDS 76 (171)
T ss_pred CCcCCCccc---cCCCCCEEeHHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccC
Confidence 678999999 4558999999999 8999999999 99999999999999999999998899999999875
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC-----C
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP-----V 201 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~-----~ 201 (247)
.+..+++.+.. +.+|+++.|+++.+.+.||+. ..|++||||++|+|++....... .
T Consensus 77 ~~~~~~~~~~~-------------~~~~~~l~D~~~~~~~~~~v~------~~P~~~lid~~G~v~~~~~~~~~~~~~~~ 137 (171)
T cd02969 77 PENMKAKAKEH-------------GYPFPYLLDETQEVAKAYGAA------CTPDFFLFDPDGKLVYRGRIDDSRPGNDP 137 (171)
T ss_pred HHHHHHHHHHC-------------CCCceEEECCchHHHHHcCCC------cCCcEEEECCCCeEEEeecccCCcccccc
Confidence 34555555532 568999999999999999998 78999999999999987522211 2
Q ss_pred CCCHHHHHHHHHhhhcccc------cCCccCCCC
Q psy15453 202 GRSVEETLRLVRAFQYTDE------HGEACPSGW 229 (247)
Q Consensus 202 ~~~~~~il~~l~~l~~~~~------~~~~~~~~~ 229 (247)
.....++.+.|+++..... .+.+|.-+|
T Consensus 138 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 171 (171)
T cd02969 138 PVTGRDLRAALDALLAGKPVPVPQTPSIGCSIKW 171 (171)
T ss_pred cccHHHHHHHHHHHHcCCCCCccccCCCCcccCC
Confidence 3456777888877665322 256777666
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-24 Score=170.02 Aligned_cols=137 Identities=26% Similarity=0.427 Sum_probs=117.9
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh-HhH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH-FTH 130 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~-~~~ 130 (247)
.+.+|+++|+|++ .+.+|+.+++++++||+++|+|| ++||++|+.+++.|++++++|++.++++++|+.|.. +..
T Consensus 34 ~~~~g~~~p~~~~---~~~~g~~~~l~~~~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~ 109 (173)
T PRK03147 34 KVQVGKEAPNFVL---TDLEGKKIELKDLKGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAV 109 (173)
T ss_pred ccCCCCCCCCcEe---ecCCCCEEeHHHcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHH
Confidence 6788999999998 45599999999999999999999 999999999999999999999988899999999764 455
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLR 210 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~ 210 (247)
..|.+.. +.+|+++.|.++.+.+.||+. .+|++|+||++|+|++.+.|..+ .+++.+
T Consensus 110 ~~~~~~~-------------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~g~i~~~~~g~~~----~~~l~~ 166 (173)
T PRK03147 110 KNFVNRY-------------GLTFPVAIDKGRQVIDAYGVG------PLPTTFLIDKDGKVVKVITGEMT----EEQLEE 166 (173)
T ss_pred HHHHHHh-------------CCCceEEECCcchHHHHcCCC------CcCeEEEECCCCcEEEEEeCCCC----HHHHHH
Confidence 6776643 578999999999999999998 88999999999999998866554 355555
Q ss_pred HHHhh
Q psy15453 211 LVRAF 215 (247)
Q Consensus 211 ~l~~l 215 (247)
.|+++
T Consensus 167 ~l~~~ 171 (173)
T PRK03147 167 YLEKI 171 (173)
T ss_pred HHHHh
Confidence 55554
|
|
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-24 Score=174.23 Aligned_cols=145 Identities=14% Similarity=0.073 Sum_probs=107.7
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC-------
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV------- 124 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~------- 124 (247)
.-..|..+|+|++ .|.+|+.++|++++||++||+|| ++|||+|+.++|.|++++++|+++|++||+|+.
T Consensus 12 ~~~~~~~~pdf~l---~d~~G~~vsL~~~kGkvvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e 87 (199)
T PTZ00056 12 KDELRKSIYDYTV---KTLEGTTVPMSSLKNKVLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQE 87 (199)
T ss_pred chhcCCCCCceEE---ECCCCCEEeHHHhCCCEEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCC
Confidence 4566789999999 45599999999999999999999 999999999999999999999999999999986
Q ss_pred -CChHhHHHHHHHhhccccccccCCCCCcceeEEecC------CchHHHH--------hCCcccCCCc-cceeEEEEcCC
Q psy15453 125 -DSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL------THEISRD--------YGVYLEDKGH-SLRGLFIIDRE 188 (247)
Q Consensus 125 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~------~~~~~~~--------~~~~~~~~g~-~~p~~~lId~~ 188 (247)
|+.++.++|.+.+ +.+|+++.|. ...+.+. |+......++ ..|++||||++
T Consensus 88 ~d~~e~~~~f~~~~-------------~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~ 154 (199)
T PTZ00056 88 FPNTKDIRKFNDKN-------------KIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKS 154 (199)
T ss_pred CCCHHHHHHHHHHc-------------CCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCC
Confidence 4556777777743 6799998752 1233322 2221100011 22479999999
Q ss_pred CcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 189 GIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 189 G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
|+|++.+.|..+ .+++.+.|+.+..
T Consensus 155 G~iv~~~~g~~~----~~~l~~~I~~ll~ 179 (199)
T PTZ00056 155 GNVVAYFSPRTE----PLELEKKIAELLG 179 (199)
T ss_pred CcEEEEeCCCCC----HHHHHHHHHHHHH
Confidence 999998866543 3445555555443
|
|
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-24 Score=172.76 Aligned_cols=134 Identities=17% Similarity=0.169 Sum_probs=106.9
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcC--CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLT--DYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~--~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
.+.+|+++|+|++ .|.+|+.++++ +++||+++|+|| ++|||+|+.++|.++++++++ ++.+++|+.|+.++
T Consensus 45 ~~~vG~~aP~f~l---~d~~G~~v~l~~~~~~gk~vvl~F~-atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~~~~~ 117 (189)
T TIGR02661 45 GPDVGDAAPIFNL---PDFDGEPVRIGGSIAPGRPTLLMFT-APSCPVCDKLFPIIKSIARAE---ETDVVMISDGTPAE 117 (189)
T ss_pred CCCCCCcCCCcEe---cCCCCCEEeccchhcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHhc---CCcEEEEeCCCHHH
Confidence 4789999999999 45599999995 579999999999 999999999999999987653 78899999888888
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
..+|.+++ +++++.+. .++++.+.|++. .+|++|+||++|+|++. +..+..+.+++++
T Consensus 118 ~~~~~~~~-------------~~~~~~~~-~~~~i~~~y~v~------~~P~~~lID~~G~I~~~--g~~~~~~~le~ll 175 (189)
T TIGR02661 118 HRRFLKDH-------------ELGGERYV-VSAEIGMAFQVG------KIPYGVLLDQDGKIRAK--GLTNTREHLESLL 175 (189)
T ss_pred HHHHHHhc-------------CCCcceee-chhHHHHhccCC------ccceEEEECCCCeEEEc--cCCCCHHHHHHHH
Confidence 88888854 34444333 457899999998 88999999999999986 3333444455555
Q ss_pred HHHHh
Q psy15453 210 RLVRA 214 (247)
Q Consensus 210 ~~l~~ 214 (247)
+.+++
T Consensus 176 ~~l~~ 180 (189)
T TIGR02661 176 EADRE 180 (189)
T ss_pred HHHHc
Confidence 55433
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-24 Score=166.27 Aligned_cols=124 Identities=23% Similarity=0.315 Sum_probs=106.5
Q ss_pred CCCCceeeeeecCCceeEEcCCCC-CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHH
Q psy15453 58 PAPYWKGTAVVDGNIKEIKLTDYR-GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINS 136 (247)
Q Consensus 58 ~~P~f~l~~~~d~~G~~v~l~~~~-gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~ 136 (247)
.+|+|+++ |.+|+.+++++++ +|++||+||+++|||+|+.+++.|++++++++++|+++|+|+.|+.+....|.+.
T Consensus 1 ~~p~f~l~---~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~ 77 (149)
T cd02970 1 TAPDFELP---DAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKG 77 (149)
T ss_pred CCCCcccc---CCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHh
Confidence 47999994 4589999999986 5788888877999999999999999999999988999999999998777767664
Q ss_pred hhccccccccCCCCCcceeEEecCCchHHHHhCCcccC-----------------------CCccceeEEEEcCCCcEEE
Q psy15453 137 LKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLED-----------------------KGHSLRGLFIIDREGIVRQ 193 (247)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~-----------------------~g~~~p~~~lId~~G~v~~ 193 (247)
. +++|++++|+++.+.+.||+.... .+...|++||||++|+|++
T Consensus 78 ~-------------~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~ 144 (149)
T cd02970 78 K-------------FLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILF 144 (149)
T ss_pred c-------------CCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEE
Confidence 3 579999999999999999985322 2347899999999999999
Q ss_pred EEec
Q psy15453 194 ITLN 197 (247)
Q Consensus 194 ~~~~ 197 (247)
.+++
T Consensus 145 ~~~~ 148 (149)
T cd02970 145 AHVD 148 (149)
T ss_pred EecC
Confidence 9864
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-24 Score=168.93 Aligned_cols=125 Identities=16% Similarity=0.186 Sum_probs=98.1
Q ss_pred CCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC--------ChHhH
Q psy15453 59 APYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD--------SHFTH 130 (247)
Q Consensus 59 ~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d--------~~~~~ 130 (247)
+|+|++ .|.+|++++|++++||++||+|| ++||| |+.++|.|++++++|+++|++||+|+.| +.+..
T Consensus 2 ~~~f~l---~d~~G~~v~l~~~~Gk~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~ 76 (152)
T cd00340 2 IYDFSV---KDIDGEPVSLSKYKGKVLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEI 76 (152)
T ss_pred cceeEE---ECCCCCEEeHHHhCCCEEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHH
Confidence 789998 55699999999999999999999 99999 9999999999999999889999999864 34667
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecC--Cch-HHHHhCCcccCC-------CccceeEEEEcCCCcEEEEEecCCC
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDL--THE-ISRDYGVYLEDK-------GHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~--~~~-~~~~~~~~~~~~-------g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
++|.++. . +++||++.|. ++. ..+.|+...... -...+++||||++|+|++.+.|..+
T Consensus 77 ~~f~~~~---------~---~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~ 144 (152)
T cd00340 77 KEFCETN---------Y---GVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTD 144 (152)
T ss_pred HHHHHHh---------c---CCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCC
Confidence 7777641 1 5789999864 232 456666421100 0012389999999999999987664
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-24 Score=177.22 Aligned_cols=144 Identities=14% Similarity=0.192 Sum_probs=108.6
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC------
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD------ 125 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d------ 125 (247)
....|+.+|+|++ .|.+|+.+++++++||++||+|| ++||++|..++|.|++++++|+++|++||+|+.|
T Consensus 72 ~~~~g~~aPdF~l---~d~~G~~vsLsd~kGK~vvl~Fw-AswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e 147 (236)
T PLN02399 72 RAATEKSVHDFTV---KDIDGKDVALSKFKGKVLLIVNV-ASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE 147 (236)
T ss_pred chhcCCCCCceEE---ECCCCCEEeHHHhCCCeEEEEEE-cCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccC
Confidence 3468999999999 45599999999999999999999 9999999999999999999999999999999964
Q ss_pred --ChHhHHHHHHHhhccccccccCCCCCcceeEEec--CCc-hHHHHhCCcccCC----C---ccceeEEEEcCCCcEEE
Q psy15453 126 --SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD--LTH-EISRDYGVYLEDK----G---HSLRGLFIIDREGIVRQ 193 (247)
Q Consensus 126 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D--~~~-~~~~~~~~~~~~~----g---~~~p~~~lId~~G~v~~ 193 (247)
+.++..+|..+ .. +.+||++.| .++ ...+.|++..... | ...|++||||++|+|++
T Consensus 148 ~~s~~ei~~f~~~---------~~---g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~ 215 (236)
T PLN02399 148 PGSNPEIKQFACT---------RF---KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVE 215 (236)
T ss_pred CCCHHHHHHHHHH---------hc---CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEE
Confidence 34455666521 11 578998854 333 4555554310000 0 14699999999999999
Q ss_pred EEecCCCCCCCHHHHHHHHHhh
Q psy15453 194 ITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 194 ~~~~~~~~~~~~~~il~~l~~l 215 (247)
++.|..+ .+++.+.|+.+
T Consensus 216 ~~~G~~~----~~~le~~I~~l 233 (236)
T PLN02399 216 RYPPTTS----PFQIEKDIQKL 233 (236)
T ss_pred EECCCCC----HHHHHHHHHHH
Confidence 9977653 34555555554
|
|
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-24 Score=169.26 Aligned_cols=138 Identities=14% Similarity=0.157 Sum_probs=104.7
Q ss_pred CCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC--------hH
Q psy15453 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS--------HF 128 (247)
Q Consensus 57 ~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~--------~~ 128 (247)
+.+|+|++ .|.+|+.++|++++||++||+|| ++|||+|+.++|.|++++++|+++|++||+|+.|+ .+
T Consensus 7 ~~~pdf~l---~d~~G~~v~l~~~~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~ 82 (167)
T PLN02412 7 KSIYDFTV---KDIGGNDVSLNQYKGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNE 82 (167)
T ss_pred CCCCceEE---ECCCCCEEeHHHhCCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHH
Confidence 77999999 45599999999999999999999 99999999999999999999999999999999753 33
Q ss_pred hHHHH-HHHhhccccccccCCCCCcceeEEec--CC-chHHHHhCCcccCC------Cc-cceeEEEEcCCCcEEEEEec
Q psy15453 129 THRAW-INSLKKDNSLKKDNRLDKLKIPLLSD--LT-HEISRDYGVYLEDK------GH-SLRGLFIIDREGIVRQITLN 197 (247)
Q Consensus 129 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D--~~-~~~~~~~~~~~~~~------g~-~~p~~~lId~~G~v~~~~~~ 197 (247)
...++ .++ + +.+||++.| .+ ....+.|++...+. ++ ..|++||||++|+|++.+.|
T Consensus 83 ~~~~~~~~~----------~---~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g 149 (167)
T PLN02412 83 EIQQTVCTR----------F---KAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAP 149 (167)
T ss_pred HHHHHHHHc----------c---CCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECC
Confidence 33332 342 2 578999874 44 36666665322110 11 46999999999999999977
Q ss_pred CCCCCCCHHHHHHHHHhh
Q psy15453 198 DLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 198 ~~~~~~~~~~il~~l~~l 215 (247)
..+ .+++.+.|+.+
T Consensus 150 ~~~----~~~l~~~i~~~ 163 (167)
T PLN02412 150 TTS----PLKIEKDIQNL 163 (167)
T ss_pred CCC----HHHHHHHHHHH
Confidence 664 24444555444
|
|
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-24 Score=161.47 Aligned_cols=107 Identities=21% Similarity=0.347 Sum_probs=95.8
Q ss_pred ceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC------CChHhHHHHHHHhhccccccc
Q psy15453 72 IKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV------DSHFTHRAWINSLKKDNSLKK 145 (247)
Q Consensus 72 G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~------d~~~~~~~~~~~~~~~~~~~~ 145 (247)
|+++++++++||++||+|| ++|||+|+.++|.|++++++|+++++.+|+|+. ++.+..++|.+++
T Consensus 13 ~~~v~l~~~~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~-------- 83 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRY-------- 83 (126)
T ss_pred CCccCHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHc--------
Confidence 5789999999999999999 999999999999999999999988999999986 3455666666643
Q ss_pred cCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecC
Q psy15453 146 DNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLND 198 (247)
Q Consensus 146 ~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~ 198 (247)
+++|+++.|+++.+.+.|++. .+|++||||++|+|++.+.|+
T Consensus 84 -----~~~~p~~~D~~~~~~~~~~v~------~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 84 -----GITYPVANDNDYATWRAYGNQ------YWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred -----CCCCCEEECCchHHHHHhCCC------cCCeEEEECCCCcEEEEEecC
Confidence 678999999999999999998 889999999999999998764
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-23 Score=163.65 Aligned_cols=135 Identities=18% Similarity=0.204 Sum_probs=102.4
Q ss_pred CCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC--------CChHhHH
Q psy15453 60 PYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV--------DSHFTHR 131 (247)
Q Consensus 60 P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~--------d~~~~~~ 131 (247)
-+|++ .|.+|++++|++++||++||+|| ++|||+|..++|.|++++++|+++|+.|++|+. |+.+.++
T Consensus 3 ~~f~l---~~~~G~~~~l~~~~Gk~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~ 78 (153)
T TIGR02540 3 YSFEV---KDARGRTVSLEKYRGKVSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIE 78 (153)
T ss_pred cccee---ECCCCCEecHHHhCCCEEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHH
Confidence 47887 56699999999999999999999 999999999999999999999998999999984 5567788
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecC---CchHHHHhCCcccCCCcccee----EEEEcCCCcEEEEEecCCCCCCC
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDL---THEISRDYGVYLEDKGHSLRG----LFIIDREGIVRQITLNDLPVGRS 204 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~---~~~~~~~~~~~~~~~g~~~p~----~~lId~~G~v~~~~~~~~~~~~~ 204 (247)
+|.++. + +.+||+++|. +......|+...... -..|+ +||||++|+|++.+.+..+
T Consensus 79 ~f~~~~---------~---~~~fp~~~d~~~~~~~~~~~~~~~~~~~-~~~p~~~~~tflID~~G~v~~~~~g~~~---- 141 (153)
T TIGR02540 79 SFARRN---------Y---GVTFPMFSKIKILGSEAEPAFRFLVDSS-KKEPRWNFWKYLVNPEGQVVKFWRPEEP---- 141 (153)
T ss_pred HHHHHh---------c---CCCCCccceEecCCCCCCcHHHHHHhcC-CCCCCCccEEEEEcCCCcEEEEECCCCC----
Confidence 887641 1 5789998772 223333333221110 03566 9999999999999966653
Q ss_pred HHHHHHHHHhh
Q psy15453 205 VEETLRLVRAF 215 (247)
Q Consensus 205 ~~~il~~l~~l 215 (247)
.+++.+.|+.+
T Consensus 142 ~~~l~~~i~~l 152 (153)
T TIGR02540 142 VEEIRPEITAL 152 (153)
T ss_pred HHHHHHHHHHh
Confidence 45666666554
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-23 Score=168.13 Aligned_cols=129 Identities=14% Similarity=0.212 Sum_probs=94.4
Q ss_pred CCCCCCceeeeeecCCceeEEcCCCCCCeE-EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC--------
Q psy15453 56 MKPAPYWKGTAVVDGNIKEIKLTDYRGKYL-VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS-------- 126 (247)
Q Consensus 56 G~~~P~f~l~~~~d~~G~~v~l~~~~gk~v-vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~-------- 126 (247)
+..+|+|++ .|.+|+.++|++++||++ |+.+| ++|||+|+.++|.|++++++|+++|+.||+|+.|.
T Consensus 17 ~~~~p~f~l---~d~~G~~vsLs~~~Gk~vvlv~n~-atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~ 92 (183)
T PTZ00256 17 TKSFFEFEA---IDIDGQLVQLSKFKGKKAIIVVNV-ACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWD 92 (183)
T ss_pred CCcccceEe---EcCCCCEEeHHHhCCCcEEEEEEE-CCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCC
Confidence 577999999 455999999999999965 45668 99999999999999999999999999999999652
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcceeEEec--CCchH-HHHhCCcccCC--------Cc-cce---eEEEEcCCCcE
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD--LTHEI-SRDYGVYLEDK--------GH-SLR---GLFIIDREGIV 191 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D--~~~~~-~~~~~~~~~~~--------g~-~~p---~~~lId~~G~v 191 (247)
.+...+|..+ .+ +++||++.| .++.. .+.|+...+.. +. .+| ++||||++|+|
T Consensus 93 ~~~~~~f~~~---------~~---~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~I 160 (183)
T PTZ00256 93 EPEIKEYVQK---------KF---NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKV 160 (183)
T ss_pred HHHHHHHHHH---------hc---CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCE
Confidence 2444555432 11 578999865 44332 34442111100 11 557 47999999999
Q ss_pred EEEEecCCC
Q psy15453 192 RQITLNDLP 200 (247)
Q Consensus 192 ~~~~~~~~~ 200 (247)
++.+.|..+
T Consensus 161 v~~~~g~~~ 169 (183)
T PTZ00256 161 VKYFSPKVN 169 (183)
T ss_pred EEEECCCCC
Confidence 999977654
|
|
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-22 Score=161.67 Aligned_cols=132 Identities=21% Similarity=0.284 Sum_probs=104.4
Q ss_pred ccccCCCCCCceeeeeecCCce--eEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC-h
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIK--EIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS-H 127 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~--~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~-~ 127 (247)
...+|.++|+|++++. +|+ .++++++ +||+++|+|| ++|||+|+.++|.++++++ +++++++|+.+. .
T Consensus 33 ~~~vG~~ap~f~l~~~---~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~~~ 104 (173)
T TIGR00385 33 SALIGKPVPAFPLAAL---REPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNELAK----DGLPIVGVDYKDQS 104 (173)
T ss_pred chhcCCCCCCcccccc---CCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHH----cCCEEEEEECCCCh
Confidence 3568999999999554 665 5666676 7999999999 9999999999999987753 479999999754 4
Q ss_pred HhHHHHHHHhhccccccccCCCCCccee-EEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHH
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKLKIP-LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVE 206 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~ 206 (247)
++..+|.++. +.+|+ ++.|+++.+.+.|++. .+|++|+||++|+|++.+.|..+ .+
T Consensus 105 ~~~~~~~~~~-------------~~~f~~v~~D~~~~~~~~~~v~------~~P~~~~id~~G~i~~~~~G~~~----~~ 161 (173)
T TIGR00385 105 QNALKFLKEL-------------GNPYQAILIDPNGKLGLDLGVY------GAPETFLVDGNGVILYRHAGPLN----NE 161 (173)
T ss_pred HHHHHHHHHc-------------CCCCceEEECCCCchHHhcCCe------eCCeEEEEcCCceEEEEEeccCC----HH
Confidence 4556676643 56786 5679999999999998 88999999999999999877654 34
Q ss_pred HHHHHHHh
Q psy15453 207 ETLRLVRA 214 (247)
Q Consensus 207 ~il~~l~~ 214 (247)
++.+.|++
T Consensus 162 ~l~~~l~~ 169 (173)
T TIGR00385 162 VWTEGFLP 169 (173)
T ss_pred HHHHHHHH
Confidence 44444443
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-22 Score=152.86 Aligned_cols=118 Identities=24% Similarity=0.348 Sum_probs=100.5
Q ss_pred CCCCCceeeeeecCCc--eeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC-CChHhHHHH
Q psy15453 57 KPAPYWKGTAVVDGNI--KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV-DSHFTHRAW 133 (247)
Q Consensus 57 ~~~P~f~l~~~~d~~G--~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~-d~~~~~~~~ 133 (247)
.++|+|+++++ +| +.+++++++||++||.|| ++|||+|+.++|.|+++++++ +++|++|+. ++.+..++|
T Consensus 1 ~~~p~f~~~~~---~g~~~~~~~~~~~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~ 73 (127)
T cd03010 1 KPAPAFSLPAL---PGPDKTLTSADLKGKPYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAW 73 (127)
T ss_pred CCCCCcccccc---cCCCccccHHHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHH
Confidence 36899999654 66 889999999999999999 999999999999999998765 599999996 556677777
Q ss_pred HHHhhccccccccCCCCCccee-EEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIP-LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
.+.. +..|+ ++.|.++.+.+.|++. .+|++|+||++|+|++.+.|..+
T Consensus 74 ~~~~-------------~~~~~~~~~D~~~~~~~~~~v~------~~P~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 74 LARH-------------GNPYAAVGFDPDGRVGIDLGVY------GVPETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred HHhc-------------CCCCceEEECCcchHHHhcCCC------CCCeEEEECCCceEEEEEeccCC
Confidence 7643 45664 6689999999999999 89999999999999999877665
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-22 Score=158.46 Aligned_cols=144 Identities=15% Similarity=0.167 Sum_probs=108.4
Q ss_pred ccccCCCCCCceeee----eecC---CceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEE-----
Q psy15453 52 NAVVMKPAPYWKGTA----VVDG---NIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEV----- 119 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~----~~d~---~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~v----- 119 (247)
.+.+|+++|...+.+ +.++ +.+.++.++++||+.||+|| |+||++|+.++|.|.++ +++|+.+
T Consensus 22 ~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~ 96 (184)
T TIGR01626 22 NLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHI-AGRTSAKEXNASLIDAI----KAAKFPPVKYQT 96 (184)
T ss_pred hhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEE-ecCCChhhccchHHHHH----HHcCCCcccccc
Confidence 466777777776521 0111 34567888999999999999 99999999999999999 5558888
Q ss_pred -EEEeCCCh-HhHHHHHHHhhccccccccCCCCCccee---EEecCCchHHHHhCCcccCCCccceeE-EEEcCCCcEEE
Q psy15453 120 -VGVSVDSH-FTHRAWINSLKKDNSLKKDNRLDKLKIP---LLSDLTHEISRDYGVYLEDKGHSLRGL-FIIDREGIVRQ 193 (247)
Q Consensus 120 -l~Vs~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~D~~~~~~~~~~~~~~~~g~~~p~~-~lId~~G~v~~ 193 (247)
++||.|+. .....|.+.+.+ .. +..|| ++.|.++.+...||+. .+|.+ ||||++|+|++
T Consensus 97 t~~IN~dd~~~~~~~fVk~fie------~~---~~~~P~~~vllD~~g~v~~~~gv~------~~P~T~fVIDk~GkVv~ 161 (184)
T TIGR01626 97 TTIINADDAIVGTGMFVKSSAK------KG---KKENPWSQVVLDDKGAVKNAWQLN------SEDSAIIVLDKTGKVKF 161 (184)
T ss_pred eEEEECccchhhHHHHHHHHHH------Hh---cccCCcceEEECCcchHHHhcCCC------CCCceEEEECCCCcEEE
Confidence 99998863 344445443322 22 23555 8999999999999999 88888 89999999999
Q ss_pred EEecCCCCCCCHHHHHHHHHhhh
Q psy15453 194 ITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 194 ~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
.+.|..+.+ .+++++..|+++.
T Consensus 162 ~~~G~l~~e-e~e~~~~li~~ll 183 (184)
T TIGR01626 162 VKEGALSDS-DIQTVISLVNGLL 183 (184)
T ss_pred EEeCCCCHH-HHHHHHHHHHHHh
Confidence 998887644 3566777776653
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=177.64 Aligned_cols=133 Identities=19% Similarity=0.291 Sum_probs=108.7
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC------
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS------ 126 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~------ 126 (247)
...++++|+|++ .|.+|+.++++ +||++||+|| |+||++|+.++|.|++++++++..+++||+|+.+.
T Consensus 32 ~~~~~~lP~f~l---~D~dG~~v~ls--kGKpVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~ 105 (521)
T PRK14018 32 ATVPHTLSTLKT---ADNRPASVYLK--KDKPTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKK 105 (521)
T ss_pred ccccCCCCCeEe---ecCCCceeecc--CCCEEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccccccc
Confidence 667789999998 67799999998 8999999999 99999999999999999999987789999998632
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHH
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVE 206 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~ 206 (247)
.++..+|.+.. + -.+++++.|.+..+.+.|++. .+|+++|||++|+|++.+.|..+ .+
T Consensus 106 ~~~~~~~~~~~----------~--y~~~pV~~D~~~~lak~fgV~------giPTt~IIDkdGkIV~~~~G~~~----~e 163 (521)
T PRK14018 106 DGDFQKWYAGL----------D--YPKLPVLTDNGGTLAQSLNIS------VYPSWAIIGKDGDVQRIVKGSIS----EA 163 (521)
T ss_pred HHHHHHHHHhC----------C--CcccceeccccHHHHHHcCCC------CcCeEEEEcCCCeEEEEEeCCCC----HH
Confidence 22233333321 1 136799999999999999999 89999999999999999988765 34
Q ss_pred HHHHHHH
Q psy15453 207 ETLRLVR 213 (247)
Q Consensus 207 ~il~~l~ 213 (247)
++.+.|+
T Consensus 164 eL~a~Ie 170 (521)
T PRK14018 164 QALALIR 170 (521)
T ss_pred HHHHHHH
Confidence 4444444
|
|
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-22 Score=157.49 Aligned_cols=102 Identities=16% Similarity=0.252 Sum_probs=83.4
Q ss_pred eeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc-------CcEEEEEeCCChH-hHHHHHHHhhcccccc
Q psy15453 73 KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI-------GAEVVGVSVDSHF-THRAWINSLKKDNSLK 144 (247)
Q Consensus 73 ~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~-------~~~vl~Vs~d~~~-~~~~~~~~~~~~~~~~ 144 (247)
+.+++++++||+++|+|| |+|||+|+.++|.|++++++++++ ++++|+||.|..+ ..++|.++.
T Consensus 16 ~~~~ls~~kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~------- 87 (146)
T cd03008 16 EREIVARLENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM------- 87 (146)
T ss_pred ccccHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC-------
Confidence 467889999999999999 999999999999999999988753 6999999998643 356666632
Q ss_pred ccCCCCCcce---eEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEE
Q psy15453 145 KDNRLDKLKI---PLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQI 194 (247)
Q Consensus 145 ~~~~~~~~~~---~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~ 194 (247)
+.+| ++..+.+..+.+.|++. .+|++||||++|+|+..
T Consensus 88 ------~~~~~~~p~~~~~~~~l~~~y~v~------~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 88 ------PKKWLFLPFEDEFRRELEAQFSVE------ELPTVVVLKPDGDVLAA 128 (146)
T ss_pred ------CCCceeecccchHHHHHHHHcCCC------CCCEEEEECCCCcEEee
Confidence 3344 33333346899999998 89999999999999976
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=151.65 Aligned_cols=121 Identities=21% Similarity=0.354 Sum_probs=101.5
Q ss_pred CCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCC-cHHHHHHHHHHHHHHHhcC---cEEEEEeCCC----hHh
Q psy15453 58 PAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFV-CPTEVLALNEKIDEFHKIG---AEVVGVSVDS----HFT 129 (247)
Q Consensus 58 ~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~-C~~~~~~l~~l~~~~~~~~---~~vl~Vs~d~----~~~ 129 (247)
.+|+|++ .|.+|+.+++++++||++||+|| ++||+. |..+++.|+++++++++++ +++++||.|+ ++.
T Consensus 1 ~~p~f~l---~~~~g~~~~l~~~~gk~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~ 76 (142)
T cd02968 1 IGPDFTL---TDQDGRPVTLSDLKGKPVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEV 76 (142)
T ss_pred CCCceEE---EcCCCCEEchHHhCCCEEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHH
Confidence 4799998 56699999999999999999999 999997 9999999999999998764 9999999865 356
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCC---chHHHHhCCcccCC-------Cc-cceeEEEEcCCCcEEEEE
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT---HEISRDYGVYLEDK-------GH-SLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~---~~~~~~~~~~~~~~-------g~-~~p~~~lId~~G~v~~~~ 195 (247)
.++|.+++ +.+|+++.|+. +.+.+.||+..... ++ +.|.+||||++|+|++++
T Consensus 77 ~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 140 (142)
T cd02968 77 LKAYAKAF-------------GPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY 140 (142)
T ss_pred HHHHHHHh-------------CCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEee
Confidence 66676643 46899999875 78999999875432 11 357899999999999987
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=145.55 Aligned_cols=110 Identities=16% Similarity=0.233 Sum_probs=93.6
Q ss_pred CCceeeeeecCCceeEEcCCCC-CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhh
Q psy15453 60 PYWKGTAVVDGNIKEIKLTDYR-GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLK 138 (247)
Q Consensus 60 P~f~l~~~~d~~G~~v~l~~~~-gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~ 138 (247)
|+|++ .+.+|+.+++++++ ||++||+|| ++||++|+.++|.++++++++++ ++.+++|+.+..++.+++.+.+
T Consensus 1 p~f~l---~~~~G~~~~l~~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~- 74 (114)
T cd02967 1 PTFDL---TTIDGAPVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKH- 74 (114)
T ss_pred CCcee---ecCCCCEEEcccccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHh-
Confidence 78998 45599999999997 999999999 99999999999999999988854 6888988877777778888754
Q ss_pred ccccccccCCCCCc-ceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 139 KDNSLKKDNRLDKL-KIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 139 ~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
+. .+|++.+ ..+.+.|++. .+|++||||++|+|++..
T Consensus 75 ------------~~~~~p~~~~--~~~~~~~~~~------~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 75 ------------GLEAFPYVLS--AELGMAYQVS------KLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred ------------CCCCCcEEec--HHHHhhcCCC------CcCeEEEECCCCeEEecc
Confidence 33 4777763 5688999998 899999999999999863
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >KOG0855|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=145.03 Aligned_cols=149 Identities=29% Similarity=0.441 Sum_probs=132.9
Q ss_pred ccccccCCCCCCceeeeeecCCceeEEcCCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 50 WTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 50 ~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk-~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
...+.+|+.+|||+| .|++|+.++|.++.|+ ++|++|+|+...|.|.++...+...|+++++.+.+|+++|.|+..
T Consensus 60 s~~v~~Gd~iPD~tL---~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~ 136 (211)
T KOG0855|consen 60 SLKVNKGDAIPDFTL---KDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSA 136 (211)
T ss_pred ceeeecCCcCCCccc---ccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchH
Confidence 346899999999999 7889999999999875 999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC-CccceeEEEEcCCCcEEEEEecCCCCCCCHHH
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK-GHSLRGLFIIDREGIVRQITLNDLPVGRSVEE 207 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~-g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~ 207 (247)
++++|..+. +++|++|+|+.+++.+.+|+.-... |+..+.+||+|++|....+.........++++
T Consensus 137 sqKaF~sKq-------------nlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~ 203 (211)
T KOG0855|consen 137 SQKAFASKQ-------------NLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDE 203 (211)
T ss_pred HHHHhhhhc-------------cCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEEEEecccCccccHHH
Confidence 999998864 7899999999999999999985433 56788999999988777777677778888999
Q ss_pred HHHHHHh
Q psy15453 208 TLRLVRA 214 (247)
Q Consensus 208 il~~l~~ 214 (247)
.++.|.+
T Consensus 204 a~k~~~~ 210 (211)
T KOG0855|consen 204 ALKFLKA 210 (211)
T ss_pred HHHHHhc
Confidence 8888764
|
|
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-20 Score=136.19 Aligned_cols=113 Identities=30% Similarity=0.515 Sum_probs=101.0
Q ss_pred CceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC--hHhHHHHHHHhh
Q psy15453 61 YWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS--HFTHRAWINSLK 138 (247)
Q Consensus 61 ~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~--~~~~~~~~~~~~ 138 (247)
+|++ .+.+|+.+++++++||+++|.|| ++||++|+..++.|.++++++++.++.+++|+.|+ .+..+.+.+.+
T Consensus 1 ~~~~---~~~~g~~~~~~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~- 75 (116)
T cd02966 1 DFSL---PDLDGKPVSLSDLKGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY- 75 (116)
T ss_pred Cccc---cCCCCCEeehHHcCCCEEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc-
Confidence 4566 45589999999999999999999 99999999999999999999987789999999998 67778877753
Q ss_pred ccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEe
Q psy15453 139 KDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITL 196 (247)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~ 196 (247)
+.+|+++.|....+.+.|++. .+|+++|+|++|+|++.+.
T Consensus 76 ------------~~~~~~~~~~~~~~~~~~~~~------~~P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 76 ------------GITFPVLLDPDGELAKAYGVR------GLPTTFLIDRDGRIRARHV 115 (116)
T ss_pred ------------CCCcceEEcCcchHHHhcCcC------ccceEEEECCCCcEEEEec
Confidence 479999999999999999998 8899999999999998864
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.5e-20 Score=147.07 Aligned_cols=121 Identities=10% Similarity=0.130 Sum_probs=95.2
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~ 132 (247)
..+..+.|+|++ . +|+.+++++++ ||+|| ++|||+|++++|.|++++++| +++|++|+.|...
T Consensus 49 ~~~~~~~~~f~l---~--dG~~v~lsd~~----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~---- 111 (181)
T PRK13728 49 RTEKPAPRWFRL---S--NGRQVNLADWK----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG---- 111 (181)
T ss_pred ccCCCCCCccCC---C--CCCEeehhHce----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC----
Confidence 456678899997 2 88999999997 78899 999999999999999999997 6999999987521
Q ss_pred HHHHhhccccccccCCCCCcceeEEec-CCchHHHHhCCcccCCCccceeEEEEcCCCcEEE-EEecCCCCCCCHHHHHH
Q psy15453 133 WINSLKKDNSLKKDNRLDKLKIPLLSD-LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQ-ITLNDLPVGRSVEETLR 210 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~D-~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~-~~~~~~~~~~~~~~il~ 210 (247)
...||.+.| .+..+.+.||.... .+|++||||++|++++ ++.|..+ .+++.+
T Consensus 112 ------------------~~~fPv~~dd~~~~~~~~~g~~~~----~iPttfLId~~G~i~~~~~~G~~~----~~~L~~ 165 (181)
T PRK13728 112 ------------------DTAFPEALPAPPDVMQTFFPNIPV----ATPTTFLVNVNTLEALPLLQGATD----AAGFMA 165 (181)
T ss_pred ------------------CCCCceEecCchhHHHHHhCCCCC----CCCeEEEEeCCCcEEEEEEECCCC----HHHHHH
Confidence 258999985 56678888985211 7899999999999974 6777665 334444
Q ss_pred HHHhhh
Q psy15453 211 LVRAFQ 216 (247)
Q Consensus 211 ~l~~l~ 216 (247)
.++.+.
T Consensus 166 ~I~~ll 171 (181)
T PRK13728 166 RMDTVL 171 (181)
T ss_pred HHHHHH
Confidence 454443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-20 Score=182.18 Aligned_cols=142 Identities=18% Similarity=0.178 Sum_probs=111.7
Q ss_pred ccccCCCCCCceeeeeecCCceeEEc-CCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC---CCh
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKL-TDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV---DSH 127 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l-~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~---d~~ 127 (247)
....|.++|+|..... +.+|+++++ ++++||++||+|| |+||++|+.++|.|++++++|++++++||+|+. |..
T Consensus 390 ~~~~g~~~p~f~~~~~-~~~g~~~~l~~~lkGK~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~ 467 (1057)
T PLN02919 390 SKKTATKVPEFPPKLD-WLNTAPLQFRRDLKGKVVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNE 467 (1057)
T ss_pred ccccCCcCCCCccccc-ccCCccccchhhcCCCEEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccccc
Confidence 4567999999997541 247889998 5899999999999 999999999999999999999988899999974 332
Q ss_pred HhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHH
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEE 207 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~ 207 (247)
++.+++.+... +. +++|+++.|.+..+.+.|++. .+|+++|||++|+|++.+.|+.. .++
T Consensus 468 ~~~~~~~~~~~-------~~---~i~~pvv~D~~~~~~~~~~V~------~iPt~ilid~~G~iv~~~~G~~~----~~~ 527 (1057)
T PLN02919 468 KDLEAIRNAVL-------RY---NISHPVVNDGDMYLWRELGVS------SWPTFAVVSPNGKLIAQLSGEGH----RKD 527 (1057)
T ss_pred ccHHHHHHHHH-------Hh---CCCccEEECCchHHHHhcCCC------ccceEEEECCCCeEEEEEecccC----HHH
Confidence 22333322221 12 679999999999999999998 89999999999999999877543 244
Q ss_pred HHHHHHhh
Q psy15453 208 TLRLVRAF 215 (247)
Q Consensus 208 il~~l~~l 215 (247)
+.+.|+.+
T Consensus 528 l~~~l~~~ 535 (1057)
T PLN02919 528 LDDLVEAA 535 (1057)
T ss_pred HHHHHHHH
Confidence 44444443
|
|
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-19 Score=144.45 Aligned_cols=141 Identities=14% Similarity=0.118 Sum_probs=99.3
Q ss_pred CCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC--------ChH
Q psy15453 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD--------SHF 128 (247)
Q Consensus 57 ~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d--------~~~ 128 (247)
..+++|++. |.+|+.++|++|+||++||+|| |+||+.|. +++.|++++++|+++|++||+|+.+ +.+
T Consensus 3 ~~~~~f~~~---~~~G~~v~Ls~~~GKvvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ 77 (183)
T PRK10606 3 DSILTTVVT---TIDGEVTTLEKYAGNVLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDE 77 (183)
T ss_pred CCccCcEeE---CCCCCEEeHHHhCCCEEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHH
Confidence 358899984 5599999999999999999999 99999995 8999999999999999999999873 456
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEecC--C----chHHHHhCCccc----C--CC------------------cc
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDL--T----HEISRDYGVYLE----D--KG------------------HS 178 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~--~----~~~~~~~~~~~~----~--~g------------------~~ 178 (247)
+.++|.+. .. +.+||++.+- + ..+.+-+.-... . .+ ..
T Consensus 78 ei~~f~~~---------~~---g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~W 145 (183)
T PRK10606 78 EIKTYCRT---------TW---GVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILW 145 (183)
T ss_pred HHHHHHHH---------cc---CCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccc
Confidence 67777752 11 5789999443 3 123332211000 0 00 01
Q ss_pred ceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 179 LRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 179 ~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
.=+-||||++|++++++.. ...+...++.+.|+.+.
T Consensus 146 NF~KFLv~~~G~vv~r~~~--~~~p~~~~i~~~i~~~l 181 (183)
T PRK10606 146 NFEKFLVGRDGQVIQRFSP--DMTPEDPIVMESIKLAL 181 (183)
T ss_pred cCEEEEECCCCcEEEEECC--CCCCCHHHHHHHHHHHh
Confidence 2247999999999999832 23334455666666553
|
|
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-19 Score=135.48 Aligned_cols=112 Identities=20% Similarity=0.326 Sum_probs=96.1
Q ss_pred CCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC--hHhHHHHHHHh
Q psy15453 60 PYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS--HFTHRAWINSL 137 (247)
Q Consensus 60 P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~--~~~~~~~~~~~ 137 (247)
|+|++ ++.+|+.+++++++||+++|+|| ++||++|+.++|.|++++++ +.+++|+.|+ .+...+|.+++
T Consensus 1 p~f~l---~~~~g~~~~~~~~~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~ 71 (123)
T cd03011 1 PLFTA---TTLDGEQFDLESLSGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKK 71 (123)
T ss_pred CCcee---ecCCCCEeeHHHhCCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHc
Confidence 78998 45599999999999999999999 99999999999999999866 5677887654 56667777743
Q ss_pred hccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 138 KKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
+.+|+++.|.++.+.+.|++. .+|+++|||++| |++.+.|..+
T Consensus 72 -------------~~~~~~~~d~~~~~~~~~~i~------~~P~~~vid~~g-i~~~~~g~~~ 114 (123)
T cd03011 72 -------------GYGFPVINDPDGVISARWGVS------VTPAIVIVDPGG-IVFVTTGVTS 114 (123)
T ss_pred -------------CCCccEEECCCcHHHHhCCCC------cccEEEEEcCCC-eEEEEeccCC
Confidence 568999999999999999998 899999999999 9988866544
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-19 Score=138.63 Aligned_cols=106 Identities=18% Similarity=0.289 Sum_probs=85.2
Q ss_pred ecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc--CcEEEEEeCCCh-HhHHHHHHHhhcccccc
Q psy15453 68 VDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI--GAEVVGVSVDSH-FTHRAWINSLKKDNSLK 144 (247)
Q Consensus 68 ~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~d~~-~~~~~~~~~~~~~~~~~ 144 (247)
+|++ +++++++++||++||+|| ++||++|+.++|.|++++++++++ ++++++|+.|.. ++..+|.+++
T Consensus 4 ~~~~-~~v~l~~~~Gk~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~------- 74 (132)
T cd02964 4 LDGE-GVVPVSALEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM------- 74 (132)
T ss_pred ccCC-ccccHHHhCCCEEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC-------
Confidence 4666 699999999999999999 999999999999999999999865 799999999864 3455555532
Q ss_pred ccCCCCCcceeEE--ec--CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 145 KDNRLDKLKIPLL--SD--LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 145 ~~~~~~~~~~~~l--~D--~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
+ .|..+ .| ....+.+.|++. .+|+++|||++|+|++..
T Consensus 75 ------~-~~~~~~~~d~~~~~~~~~~~~v~------~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 75 ------P-PWLAVPFEDEELRELLEKQFKVE------GIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred ------C-CeEeeccCcHHHHHHHHHHcCCC------CCCEEEEECCCCCEEchh
Confidence 2 33332 22 125678889998 899999999999999764
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.2e-20 Score=140.03 Aligned_cols=110 Identities=17% Similarity=0.293 Sum_probs=86.7
Q ss_pred ecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc--CcEEEEEeCCChHhHHHHHHHhhccccccc
Q psy15453 68 VDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI--GAEVVGVSVDSHFTHRAWINSLKKDNSLKK 145 (247)
Q Consensus 68 ~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~ 145 (247)
.|.+|+.+++++++||++||+|| ++||++|+.++|.|++++++++++ ++++++|+.|... +.+.+....
T Consensus 4 ~~~~G~~v~l~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~--~~~~~~~~~------ 74 (131)
T cd03009 4 LRNDGGKVPVSSLEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDE--ESFNDYFSK------ 74 (131)
T ss_pred cccCCCCccHHHhCCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCH--HHHHHHHHc------
Confidence 56799999999999999999999 999999999999999999999864 7999999998753 333333221
Q ss_pred cCCCCCcceeEE-ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 146 DNRLDKLKIPLL-SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 146 ~~~~~~~~~~~l-~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
.+. ..+++. .|....+.+.|++. .+|+++|||++|+|+...
T Consensus 75 -~~~--~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 75 -MPW--LAVPFSDRERRSRLNRTFKIE------GIPTLIILDADGEVVTTD 116 (131)
T ss_pred -CCe--eEcccCCHHHHHHHHHHcCCC------CCCEEEEECCCCCEEccc
Confidence 111 122222 23446899999998 899999999999999764
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.5e-18 Score=128.04 Aligned_cols=140 Identities=26% Similarity=0.454 Sum_probs=122.5
Q ss_pred cccCCCCcccccccccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc
Q psy15453 36 SFTDSPTKFDHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI 115 (247)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~ 115 (247)
+|.+++.+ .....+++|+++|+|++ ++.+.+.++++++.||..+|+.+|+-..|+|..+...+++...++.
T Consensus 5 tfkgnpv~----l~g~~~~vGd~ap~ftl---~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~-- 75 (158)
T COG2077 5 TFKGNPVT----LKGNEPQVGDKAPDFTL---VGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG-- 75 (158)
T ss_pred EeCCCeEE----ecCCCCccCCcCCceEE---EcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC--
Confidence 45555554 66677999999999999 6779999999999999999999999999999999999999998886
Q ss_pred CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC-chHHHHhCCcccCC---CccceeEEEEcCCCcE
Q psy15453 116 GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT-HEISRDYGVYLEDK---GHSLRGLFIIDREGIV 191 (247)
Q Consensus 116 ~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-~~~~~~~~~~~~~~---g~~~p~~~lId~~G~v 191 (247)
+..|+.||.|-|..+++|..+ +|++ +...++|.. ..+.++||+.+.+. |+.-++.|++|.+|+|
T Consensus 76 ~~~Vl~IS~DLPFAq~RfC~a----------eGi~--nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V 143 (158)
T COG2077 76 NTVVLCISMDLPFAQKRFCGA----------EGIE--NVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKV 143 (158)
T ss_pred CcEEEEEeCCChhHHhhhhhh----------cCcc--cceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcE
Confidence 699999999999999999995 4442 477888875 67999999998876 6778999999999999
Q ss_pred EEEEe
Q psy15453 192 RQITL 196 (247)
Q Consensus 192 ~~~~~ 196 (247)
.|..+
T Consensus 144 ~y~el 148 (158)
T COG2077 144 TYSEL 148 (158)
T ss_pred EEEEc
Confidence 99874
|
|
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.5e-18 Score=121.78 Aligned_cols=91 Identities=26% Similarity=0.470 Sum_probs=70.4
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHH-hcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH-KIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~-~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
||+++|+|| ++||++|++++|.|.+++++|+ +.++++|+||.|.. ..+|.+..++ . +.+|..+...
T Consensus 1 gK~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~--~~~~~~~~~~-------~---~~~~~~~~~~ 67 (95)
T PF13905_consen 1 GKPVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED--EEEWKKFLKK-------N---NFPWYNVPFD 67 (95)
T ss_dssp TSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS--HHHHHHHHHT-------C---TTSSEEEETT
T ss_pred CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC--HHHHHHHHHh-------c---CCCceEEeeC
Confidence 799999999 9999999999999999999999 66899999999863 3344443322 2 2345444333
Q ss_pred ---CchHHHHhCCcccCCCccceeEEEEcCCCcE
Q psy15453 161 ---THEISRDYGVYLEDKGHSLRGLFIIDREGIV 191 (247)
Q Consensus 161 ---~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v 191 (247)
...+.+.|++. .+|+++|+|++|+|
T Consensus 68 ~~~~~~l~~~~~i~------~iP~~~lld~~G~I 95 (95)
T PF13905_consen 68 DDNNSELLKKYGIN------GIPTLVLLDPDGKI 95 (95)
T ss_dssp THHHHHHHHHTT-T------SSSEEEEEETTSBE
T ss_pred cchHHHHHHHCCCC------cCCEEEEECCCCCC
Confidence 47899999999 89999999999987
|
... |
| >PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.1e-17 Score=130.51 Aligned_cols=132 Identities=23% Similarity=0.345 Sum_probs=94.7
Q ss_pred cCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHHhc--CcEEEEEeCCChHhHH
Q psy15453 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTF-VCPTEVLALNEKIDEFHKI--GAEVVGVSVDSHFTHR 131 (247)
Q Consensus 55 ~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp-~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~d~~~~~~ 131 (247)
.....|+|+| +|++|+++++++++||++||+|. .+.|| .|+..+..|.++++++.+. .+++|.||.|+..+..
T Consensus 28 ~~~~~~~f~L---~d~~G~~~~~~~~~Gk~~lv~F~-yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTL---TDQDGKTVTLDDLKGKWVLVFFG-YTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTP 103 (174)
T ss_dssp TSCSSST-EE---EETTSSEEEGGGGTTSEEEEEEE--TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-H
T ss_pred CCccCCCcEE---EcCCCCEecHHHhCCCeEEEEEE-EcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCH
Confidence 4567889999 78899999999999999999999 77775 8999999999999999853 6999999998754444
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC-------C---ccceeEEEEcCCCcEEEEEe
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK-------G---HSLRGLFIIDREGIVRQITL 196 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~-------g---~~~p~~~lId~~G~v~~~~~ 196 (247)
+-.+++.+ ..+.+...|....+.-..+.+.|++..... + .+...+|||||+|+|+..+.
T Consensus 104 ~~L~~Y~~------~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 104 EVLKKYAK------KFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHHHHH------CHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHHHHH------hcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 43443332 333222233332222367888898775321 1 25678999999999999874
|
In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A .... |
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=124.87 Aligned_cols=94 Identities=17% Similarity=0.194 Sum_probs=68.3
Q ss_pred CceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCC
Q psy15453 71 NIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLD 150 (247)
Q Consensus 71 ~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (247)
.|+.+++++ +.||+|| ++|||+|++++|.|++++++| ++.|++|+.|....
T Consensus 43 ~G~~~~l~~----~~lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~~~--------------------- 93 (153)
T TIGR02738 43 QGRHANQDD----YALVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQGL--------------------- 93 (153)
T ss_pred cchhhhcCC----CEEEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCCcc---------------------
Confidence 466666654 4599999 999999999999999999887 68999999886320
Q ss_pred CcceeEEecCCchHH-HHh---CCcccCCCccceeEEEEcCCCcEE-EEEecCCC
Q psy15453 151 KLKIPLLSDLTHEIS-RDY---GVYLEDKGHSLRGLFIIDREGIVR-QITLNDLP 200 (247)
Q Consensus 151 ~~~~~~l~D~~~~~~-~~~---~~~~~~~g~~~p~~~lId~~G~v~-~~~~~~~~ 200 (247)
..|+...|.+.... +.| ++. .+|++|+||++|+++ .++.|..+
T Consensus 94 -~~fp~~~~~~~~~~~~~~~~~~v~------~iPTt~LID~~G~~i~~~~~G~~s 141 (153)
T TIGR02738 94 -TGFPDPLPATPEVMQTFFPNPRPV------VTPATFLVNVNTRKAYPVLQGAVD 141 (153)
T ss_pred -cccccccCCchHHHHHHhccCCCC------CCCeEEEEeCCCCEEEEEeecccC
Confidence 13344444333333 445 565 889999999998864 46667554
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.7e-15 Score=122.04 Aligned_cols=140 Identities=21% Similarity=0.302 Sum_probs=109.6
Q ss_pred CceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHH---hcCcEEEEEeCCChHhHHHHHHH
Q psy15453 61 YWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTF-VCPTEVLALNEKIDEFH---KIGAEVVGVSVDSHFTHRAWINS 136 (247)
Q Consensus 61 ~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp-~C~~~~~~l~~l~~~~~---~~~~~vl~Vs~d~~~~~~~~~~~ 136 (247)
+|++ +|++|+.+++.+++||+++|+|. .|.|| +|+.++..|.++++++. ..+++++.||.|+..+..+..++
T Consensus 49 ~f~l---~d~~G~~~~~~~l~Gk~~lv~Fg-yT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~ 124 (207)
T COG1999 49 DFEL---TDQDGKPFTLKDLKGKPSLVFFG-YTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKK 124 (207)
T ss_pred ceee---ecCCCCEeeccccCCCEEEEEee-cCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHH
Confidence 7998 88999999999999999999999 77776 89999999999999988 45688999999998777777776
Q ss_pred hhccccccccCCCCCcceeEEecCC---chHHHHhCCcccC---CC------ccceeEEEEcCCCcEEEEEecCCCCCCC
Q psy15453 137 LKKDNSLKKDNRLDKLKIPLLSDLT---HEISRDYGVYLED---KG------HSLRGLFIIDREGIVRQITLNDLPVGRS 204 (247)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~D~~---~~~~~~~~~~~~~---~g------~~~p~~~lId~~G~v~~~~~~~~~~~~~ 204 (247)
+.. ++. ...|..+++.. .++.+.|++...+ .+ .+...+|+||++|+++..+.+..+
T Consensus 125 Y~~-------~~~-~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~---- 192 (207)
T COG1999 125 YAE-------LNF-DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEP---- 192 (207)
T ss_pred Hhc-------ccC-CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCC----
Confidence 532 111 34677777643 6788999988421 11 245679999999999998844433
Q ss_pred HHHHHHHHHhhh
Q psy15453 205 VEETLRLVRAFQ 216 (247)
Q Consensus 205 ~~~il~~l~~l~ 216 (247)
.+++++.|+.+.
T Consensus 193 ~~~i~~~l~~l~ 204 (207)
T COG1999 193 PEEIAADLKKLL 204 (207)
T ss_pred hHHHHHHHHHHh
Confidence 588888887764
|
|
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-13 Score=105.27 Aligned_cols=92 Identities=20% Similarity=0.240 Sum_probs=73.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+||++||+|| ++||++|+.++|.+.+++++|.+ .+.|+.|+.|...
T Consensus 19 ~gk~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~-------------------------------- 64 (142)
T cd02950 19 NGKPTLVEFY-ADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK-------------------------------- 64 (142)
T ss_pred CCCEEEEEEE-CCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc--------------------------------
Confidence 6899999999 99999999999999999999975 5889998887411
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
...+.+.|++. .+|+++++|++|+++..+.|..+ .+++.+.|+.+.
T Consensus 65 ~~~~~~~~~V~------~iPt~v~~~~~G~~v~~~~G~~~----~~~l~~~l~~l~ 110 (142)
T cd02950 65 WLPEIDRYRVD------GIPHFVFLDREGNEEGQSIGLQP----KQVLAQNLDALV 110 (142)
T ss_pred cHHHHHHcCCC------CCCEEEEECCCCCEEEEEeCCCC----HHHHHHHHHHHH
Confidence 12456788998 89999999999999998877543 344555555544
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.4e-13 Score=101.44 Aligned_cols=136 Identities=19% Similarity=0.221 Sum_probs=97.6
Q ss_pred CCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC--------ChHhH
Q psy15453 59 APYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD--------SHFTH 130 (247)
Q Consensus 59 ~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d--------~~~~~ 130 (247)
+-+|+. .+.+|++++|++|+||++||+.. |+.|+.-+ +...|+.+|++|+++|++||++..+ +.+++
T Consensus 5 ~yd~~~---~~~~G~~~~l~~~~GkVlLIVNt-ASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI 79 (162)
T COG0386 5 IYDFSV---KDIDGEPVSLSDYKGKVLLIVNT-ASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEI 79 (162)
T ss_pred ccccee---eccCCCCccHHHhCCcEEEEEEc-ccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHH
Confidence 457887 45599999999999999999999 99999888 9999999999999999999999653 35667
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCC---chHHHHhCCcccCC-C-------ccceeEEEEcCCCcEEEEEecCC
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLT---HEISRDYGVYLEDK-G-------HSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~---~~~~~~~~~~~~~~-g-------~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
..|.... | +.+||++..-+ ...+..|....... | .+.=+-||||++|+|+.++ .+.
T Consensus 80 ~~fC~~~--------Y----gVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf-~p~ 146 (162)
T COG0386 80 AKFCQLN--------Y----GVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRF-SPK 146 (162)
T ss_pred HHHHHhc--------c----CceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEee-CCC
Confidence 7777642 3 78999986443 23333333322221 1 1334679999999999998 333
Q ss_pred CCCCCHHHHHHHHHhh
Q psy15453 200 PVGRSVEETLRLVRAF 215 (247)
Q Consensus 200 ~~~~~~~~il~~l~~l 215 (247)
... +++...|+++
T Consensus 147 t~P---~d~~~~Ie~l 159 (162)
T COG0386 147 TKP---EDIELAIEKL 159 (162)
T ss_pred CCh---hhHHHHHHHH
Confidence 222 3333355544
|
|
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-13 Score=116.65 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=83.5
Q ss_pred ceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCC
Q psy15453 72 IKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDK 151 (247)
Q Consensus 72 G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (247)
.+...+++++|+++||+|| ++||++|+.++|.|++++++| ++.|++|+.|....
T Consensus 156 ~~~~~l~~l~~k~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~---------------------- 209 (271)
T TIGR02740 156 QKDRVMKDLAKKSGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL---------------------- 209 (271)
T ss_pred HHHHHHHHhcCCeEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc----------------------
Confidence 3447788899999999999 999999999999999999887 69999999986321
Q ss_pred cceeEEecCCchHHHHhCCcccCCCccceeEEEEcCC-CcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 152 LKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDRE-GIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 152 ~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~-G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
..|+.. +.+..+.+.||+. .+|++||+|++ |+|..+..|..+ .+++.+.+..+.
T Consensus 210 ~~fp~~-~~d~~la~~~gV~------~vPtl~Lv~~~~~~v~~v~~G~~s----~~eL~~~i~~~a 264 (271)
T TIGR02740 210 PGFPNA-RPDAGQAQQLKIR------TVPAVFLADPDPNQFTPIGFGVMS----ADELVDRILLAA 264 (271)
T ss_pred ccCCcc-cCCHHHHHHcCCC------cCCeEEEEECCCCEEEEEEeCCCC----HHHHHHHHHHHh
Confidence 124444 3456688999998 89999999994 666656556554 466666666654
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=96.53 Aligned_cols=80 Identities=13% Similarity=0.051 Sum_probs=65.0
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 79 DYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 79 ~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
+.+||++||.|| ++||++|+.++|.|+++++++ .++.++.|+.|....
T Consensus 12 ~~~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~----------------------------- 59 (103)
T cd02985 12 KAKGRLVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDS----------------------------- 59 (103)
T ss_pred HcCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChH-----------------------------
Confidence 346899999999 999999999999999999998 378999998875211
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
...+++.|++. .+|+++++ ++|+++..+.|..
T Consensus 60 --~~~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~~ 91 (103)
T cd02985 60 --TMELCRREKII------EVPHFLFY-KDGEKIHEEEGIG 91 (103)
T ss_pred --HHHHHHHcCCC------cCCEEEEE-eCCeEEEEEeCCC
Confidence 13567788898 88986666 8999998886644
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >KOG2501|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-12 Score=100.26 Aligned_cols=111 Identities=23% Similarity=0.274 Sum_probs=86.4
Q ss_pred ecCCceeEEcC-CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc--CcEEEEEeCCChH-hHHHHHHHhhccccc
Q psy15453 68 VDGNIKEIKLT-DYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI--GAEVVGVSVDSHF-THRAWINSLKKDNSL 143 (247)
Q Consensus 68 ~d~~G~~v~l~-~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~d~~~-~~~~~~~~~~~~~~~ 143 (247)
.+.+|..+..+ .++||++.++|- |.|||+|+...|.|.++|++.++. .++||.||.|..+ +...+....
T Consensus 18 ~~~~~~~~~~~~~l~gKvV~lyFs-A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~------ 90 (157)
T KOG2501|consen 18 RKQDGTEVLASEALQGKVVGLYFS-AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEH------ 90 (157)
T ss_pred eccCCccchHhHhhCCcEEEEEEE-EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhc------
Confidence 45577777777 678999999998 999999999999999999999853 4899999998744 455555532
Q ss_pred cccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 144 KKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 144 ~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
+|. .+-.|+-.+..+++.+.|++. .+|+..++.++|+++...
T Consensus 91 ---~~~-W~~iPf~d~~~~~l~~ky~v~------~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 91 ---HGD-WLAIPFGDDLIQKLSEKYEVK------GIPALVILKPDGTVVTED 132 (157)
T ss_pred ---CCC-eEEecCCCHHHHHHHHhcccC------cCceeEEecCCCCEehHh
Confidence 221 334454444448899999999 999999999999888553
|
|
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.7e-12 Score=92.36 Aligned_cols=85 Identities=14% Similarity=0.216 Sum_probs=65.1
Q ss_pred CCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 78 TDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 78 ~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
++++||+++|.|| ++||++|+.++|.+.+++++++ ++.++.|..+.
T Consensus 14 ~~~~g~~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~------------------------------- 59 (100)
T cd02999 14 AFNREDYTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEESS------------------------------- 59 (100)
T ss_pred HhcCCCEEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCC-------------------------------
Confidence 3578999999999 9999999999999999999986 57787775431
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLR 210 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~ 210 (247)
....+.++|++. .+|+++++++ | .+..+.|. .+.+++.+
T Consensus 60 --~~~~l~~~~~V~------~~PT~~lf~~-g-~~~~~~G~----~~~~~l~~ 98 (100)
T cd02999 60 --IKPSLLSRYGVV------GFPTILLFNS-T-PRVRYNGT----RTLDSLAA 98 (100)
T ss_pred --CCHHHHHhcCCe------ecCEEEEEcC-C-ceeEecCC----CCHHHHHh
Confidence 123678999998 8999999975 4 44455454 33455544
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=90.81 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=71.1
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 80 YRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 80 ~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
.+|++++|.|| ++||++|+...|.+.++.++++..++.++.|+.|.
T Consensus 22 ~~~~~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~--------------------------------- 67 (111)
T cd02963 22 SFKKPYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH--------------------------------- 67 (111)
T ss_pred cCCCeEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc---------------------------------
Confidence 36899999999 99999999999999999999986678888887653
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
+..+.+.|++. .+|+++++. +|+++....|..+ .+++.+.|+.
T Consensus 68 -~~~l~~~~~V~------~~Pt~~i~~-~g~~~~~~~G~~~----~~~l~~~i~~ 110 (111)
T cd02963 68 -ERRLARKLGAH------SVPAIVGII-NGQVTFYHDSSFT----KQHVVDFVRK 110 (111)
T ss_pred -cHHHHHHcCCc------cCCEEEEEE-CCEEEEEecCCCC----HHHHHHHHhc
Confidence 23577888998 899999994 8888777655433 4666666654
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-11 Score=89.74 Aligned_cols=87 Identities=9% Similarity=0.088 Sum_probs=67.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.|++++|+|| ++||++|+..+|.+.++++++++..+.++.|+.|.
T Consensus 16 ~~~~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~---------------------------------- 60 (102)
T cd02948 16 NKGLTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT---------------------------------- 60 (102)
T ss_pred cCCeEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC----------------------------------
Confidence 4789999999 99999999999999999999875456777776652
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
..+.++|++. .+|+++++ ++|+++....|. +.+++.+.|+.+
T Consensus 61 -~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~-----~~~~~~~~i~~~ 102 (102)
T cd02948 61 -IDTLKRYRGK------CEPTFLFY-KNGELVAVIRGA-----NAPLLNKTITEL 102 (102)
T ss_pred -HHHHHHcCCC------cCcEEEEE-ECCEEEEEEecC-----ChHHHHHHHhhC
Confidence 2356888888 88976666 689988887553 347777777653
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >KOG2792|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.7e-12 Score=103.38 Aligned_cols=137 Identities=19% Similarity=0.325 Sum_probs=96.7
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHHhc-CcE--EEEEeCCC-
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTF-VCPTEVLALNEKIDEFHKI-GAE--VVGVSVDS- 126 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp-~C~~~~~~l~~l~~~~~~~-~~~--vl~Vs~d~- 126 (247)
...+| -+|+| +|.+|+.++-.+|+||+++|+|- .|+|| .|+.|+..|.+..+++.++ ++. -|.|++|+
T Consensus 115 k~~iG---GpF~L---~d~~Gk~~te~df~Gkw~LiYFG-FThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 115 KPAIG---GPFSL---VDHDGKRVTEKDFLGKWSLIYFG-FTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred CCccC---CceEE---EecCCCeecccccccceEEEEec-ccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 45566 47998 78899999999999999999999 88888 8999999999999999843 333 46777766
Q ss_pred ---hHhHHHHHHHhhccccccccCCCCCcceeEEecC---CchHHHHhCCcccCC----C-----ccceeEEEEcCCCcE
Q psy15453 127 ---HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL---THEISRDYGVYLEDK----G-----HSLRGLFIIDREGIV 191 (247)
Q Consensus 127 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~---~~~~~~~~~~~~~~~----g-----~~~p~~~lId~~G~v 191 (247)
++...++.+.+.. ..--|++. -..+++.|.|+.... + -+.=.+|||||+|++
T Consensus 188 RD~~~~~~eY~~eF~p-------------kllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~F 254 (280)
T KOG2792|consen 188 RDSVEVVAEYVSEFHP-------------KLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEF 254 (280)
T ss_pred cCCHHHHHHHHHhcCh-------------hhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcce
Confidence 4555666665422 22223332 267888998886541 1 133468999999999
Q ss_pred EEEEecCCCCCCCHHHHHHHH
Q psy15453 192 RQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 192 ~~~~~~~~~~~~~~~~il~~l 212 (247)
+..+ |. ..+.+++.+.|
T Consensus 255 vd~~-Gr---N~~~~~~~~~I 271 (280)
T KOG2792|consen 255 VDYY-GR---NYDADELADSI 271 (280)
T ss_pred ehhh-cc---cCCHHHHHHHH
Confidence 9876 22 22345555444
|
|
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-11 Score=92.11 Aligned_cols=103 Identities=19% Similarity=0.122 Sum_probs=75.0
Q ss_pred CC-CeEEEEEEeCCCCCCcHHHHHHHH---HHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeE
Q psy15453 81 RG-KYLVFFFYPLDFTFVCPTEVLALN---EKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPL 156 (247)
Q Consensus 81 ~g-k~vvl~F~~a~~Cp~C~~~~~~l~---~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (247)
.| |+++|.|| ++||++|+...+.+. ++.+.+++ ++.++.|+.|....... |..
T Consensus 12 ~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~---------------------~~~ 68 (125)
T cd02951 12 DGKKPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTD---------------------FDG 68 (125)
T ss_pred cCCCcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeec---------------------cCC
Confidence 47 89999999 999999999999885 56666654 78889998875332111 111
Q ss_pred EecCCchHHHHhCCcccCCCccceeEEEEcCC-CcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 157 LSDLTHEISRDYGVYLEDKGHSLRGLFIIDRE-GIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 157 l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~-G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
.......+.++|++. .+|+++++|++ |+++....|..+ .+++.+.|+.+.
T Consensus 69 ~~~~~~~l~~~~~v~------~~Pt~~~~~~~gg~~~~~~~G~~~----~~~~~~~l~~~~ 119 (125)
T cd02951 69 EALSEKELARKYRVR------FTPTVIFLDPEGGKEIARLPGYLP----PDEFLAYLEYVQ 119 (125)
T ss_pred CCccHHHHHHHcCCc------cccEEEEEcCCCCceeEEecCCCC----HHHHHHHHHHHH
Confidence 112457899999998 89999999999 899988766543 355556665554
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-10 Score=89.45 Aligned_cols=139 Identities=24% Similarity=0.371 Sum_probs=109.3
Q ss_pred ccccCCCCCCceeeeee-cC--C-ceeEEcCCC-CCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHHHhcCcE-EEEEeC
Q psy15453 52 NAVVMKPAPYWKGTAVV-DG--N-IKEIKLTDY-RGKYLVFFFYPLDFTFVCPT-EVLALNEKIDEFHKIGAE-VVGVSV 124 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~-d~--~-G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~-~~~~l~~l~~~~~~~~~~-vl~Vs~ 124 (247)
...+|+++|+.++..-. |. + -..++..++ +||.++|+=.|+.+.|.|.. ++|...+++++|+++|+. |+.||+
T Consensus 2 ~~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSV 81 (165)
T COG0678 2 TIMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSV 81 (165)
T ss_pred ccccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEe
Confidence 35789999999986421 11 1 234555555 79999999999999999997 999999999999999985 788899
Q ss_pred CChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCC--c---cceeEEEEcCCCcEEEEEecCC
Q psy15453 125 DSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG--H---SLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 125 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g--~---~~p~~~lId~~G~v~~~~~~~~ 199 (247)
++..-..+|.+.. |. .-+..++.|.++++.+..|......+ + .-+...|| +||.|.+.+..+.
T Consensus 82 ND~FVm~AWak~~----------g~-~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~iE~p 149 (165)
T COG0678 82 NDAFVMNAWAKSQ----------GG-EGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLFIEPP 149 (165)
T ss_pred CcHHHHHHHHHhc----------CC-CccEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEEecCC
Confidence 9999999999954 33 23899999999999999999877653 2 23556777 6899999987665
Q ss_pred CCC
Q psy15453 200 PVG 202 (247)
Q Consensus 200 ~~~ 202 (247)
..+
T Consensus 150 ~~~ 152 (165)
T COG0678 150 GDP 152 (165)
T ss_pred CCc
Confidence 443
|
|
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.4e-11 Score=85.29 Aligned_cols=85 Identities=15% Similarity=0.205 Sum_probs=66.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+|++++|.|| ++||++|+...|.+.++++.+.. .+.++.|+.+.
T Consensus 11 ~~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------------- 54 (96)
T cd02956 11 TQVPVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDA---------------------------------- 54 (96)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccC----------------------------------
Confidence 4789999999 99999999999999999999864 46677776653
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
...+.+.|++. .+|++++++ +|+++..+.|..+ .+++...|
T Consensus 55 ~~~l~~~~~i~------~~Pt~~~~~-~g~~~~~~~g~~~----~~~l~~~l 95 (96)
T cd02956 55 QPQIAQQFGVQ------ALPTVYLFA-AGQPVDGFQGAQP----EEQLRQML 95 (96)
T ss_pred CHHHHHHcCCC------CCCEEEEEe-CCEEeeeecCCCC----HHHHHHHh
Confidence 24677888998 899999997 8988877655432 34554443
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-10 Score=85.90 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=72.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.++++||.|| |+||++|+...|.|.++.+++.+ .+.++-|+.|.
T Consensus 13 ~~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~-~v~f~kVDvD~---------------------------------- 56 (114)
T cd02954 13 EEKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSN-FAVIYLVDIDE---------------------------------- 56 (114)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccC-ceEEEEEECCC----------------------------------
Confidence 3679999999 99999999999999999999863 26788887764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCC------CCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPV------GRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~------~~~~~~il~~l~~l 215 (247)
...+++.|++. .+|+++++ ++|+.+....|..+. .++-++.++.++.+
T Consensus 57 ~~~la~~~~V~------~iPTf~~f-k~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 57 VPDFNKMYELY------DPPTVMFF-FRNKHMKIDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred CHHHHHHcCCC------CCCEEEEE-ECCEEEEEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 35788999999 89999888 689999988765542 23445555555443
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >KOG1651|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=90.69 Aligned_cols=123 Identities=15% Similarity=0.233 Sum_probs=87.5
Q ss_pred CCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC--------hH
Q psy15453 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS--------HF 128 (247)
Q Consensus 57 ~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~--------~~ 128 (247)
..+-+|+. .|.+|+.|+|+.|+||++||+.. |+.|+.-......|+.++++|+++|++|+++..+. .+
T Consensus 12 ~siydf~~---~d~~G~~v~l~~yrGkV~LiVNV-AS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~ 87 (171)
T KOG1651|consen 12 GSIYDFSA---KDLDGEYVSLSQYRGKVVLIVNV-ASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNE 87 (171)
T ss_pred cceeeeEE---ecCCCCCccHHHhCCeEEEEEEc-ccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcH
Confidence 45668887 45599999999999999999999 99999999999999999999999999999996532 33
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEecC--C-chHHHHhCCcccCC----Cc---cceeEEEEcCCCcEEEEE
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDL--T-HEISRDYGVYLEDK----GH---SLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~--~-~~~~~~~~~~~~~~----g~---~~p~~~lId~~G~v~~~~ 195 (247)
++..+... +. +..|+++..- + ..-...|...-... |. ..=+-||||++|+|+.++
T Consensus 88 Ei~~f~~~---------r~---~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry 152 (171)
T KOG1651|consen 88 EILNFVKV---------RY---GAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRF 152 (171)
T ss_pred HHHHHHHh---------cc---CCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEee
Confidence 44444442 12 4566666422 2 12222222221111 11 223568999999999998
|
|
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=85.92 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=68.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.||+++|.|| ++||++|+...+.+ .++.+.+++ ++.++.|+.+....
T Consensus 10 ~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~---------------------------- 59 (104)
T cd02953 10 QGKPVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDP---------------------------- 59 (104)
T ss_pred cCCeEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCH----------------------------
Confidence 4789999999 99999999999887 577777765 78888887754110
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcC-CCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDR-EGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~-~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
....+.++|++. .+|+++++++ +|++...+.|..+ .+++.+.|
T Consensus 60 --~~~~~~~~~~i~------~~Pti~~~~~~~g~~~~~~~G~~~----~~~l~~~l 103 (104)
T cd02953 60 --EITALLKRFGVF------GPPTYLFYGPGGEPEPLRLPGFLT----ADEFLEAL 103 (104)
T ss_pred --HHHHHHHHcCCC------CCCEEEEECCCCCCCCcccccccC----HHHHHHHh
Confidence 014677888998 8999999999 8998877655443 45555444
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >KOG0541|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=88.68 Aligned_cols=141 Identities=22% Similarity=0.336 Sum_probs=108.8
Q ss_pred ccccccCCCCCCceeeeeecCC----ceeEEcCCC-CCCeEEEEEEeCCCCCC-cHHHHHHHHHHHHHHHhcCcE-EEEE
Q psy15453 50 WTNAVVMKPAPYWKGTAVVDGN----IKEIKLTDY-RGKYLVFFFYPLDFTFV-CPTEVLALNEKIDEFHKIGAE-VVGV 122 (247)
Q Consensus 50 ~~~~~~G~~~P~f~l~~~~d~~----G~~v~l~~~-~gk~vvl~F~~a~~Cp~-C~~~~~~l~~l~~~~~~~~~~-vl~V 122 (247)
+..+.+|+..|+-.+..+.+.. +.++.++++ +||.++|+=.|+.+.|. |..++|-+.+..++++.+|+. ++.|
T Consensus 6 ~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicv 85 (171)
T KOG0541|consen 6 MAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICV 85 (171)
T ss_pred cccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEE
Confidence 4468899999993332111221 227888887 79999999999999999 568899999999999999985 7788
Q ss_pred eCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC----Cccc-eeEEEEcCCCcEEEEEec
Q psy15453 123 SVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK----GHSL-RGLFIIDREGIVRQITLN 197 (247)
Q Consensus 123 s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~----g~~~-p~~~lId~~G~v~~~~~~ 197 (247)
|+|++..++.|.+.+.. +-...++.|+++++.+.+|+..+.. |... +...++ .||+|.+....
T Consensus 86 SVnDpFv~~aW~k~~g~-----------~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~nvE 153 (171)
T KOG0541|consen 86 SVNDPFVMKAWAKSLGA-----------NDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVNVE 153 (171)
T ss_pred ecCcHHHHHHHHhhcCc-----------cceEEEEecCCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEEec
Confidence 99999999999997644 5688999999999999999876543 2233 344555 58999999876
Q ss_pred CCCCC
Q psy15453 198 DLPVG 202 (247)
Q Consensus 198 ~~~~~ 202 (247)
+.+.+
T Consensus 154 ~~g~~ 158 (171)
T KOG0541|consen 154 EGGTD 158 (171)
T ss_pred cCCCc
Confidence 66543
|
|
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.2e-10 Score=82.87 Aligned_cols=86 Identities=17% Similarity=0.330 Sum_probs=68.0
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++++|.|| ++|||+|+..+|.++++++++.. ++.++.|+.|. .
T Consensus 21 ~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~----------------------------------~ 64 (109)
T PRK09381 21 DGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ----------------------------------N 64 (109)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCC----------------------------------C
Confidence 679999999 99999999999999999999975 57888887653 1
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
..+.+.|++. .+|+++++ ++|++++...|..+ .+++...|++
T Consensus 65 ~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~i~~ 106 (109)
T PRK09381 65 PGTAPKYGIR------GIPTLLLF-KNGEVAATKVGALS----KGQLKEFLDA 106 (109)
T ss_pred hhHHHhCCCC------cCCEEEEE-eCCeEEEEecCCCC----HHHHHHHHHH
Confidence 2456788888 89998888 68999988766543 4555555554
|
|
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.5e-10 Score=82.23 Aligned_cols=80 Identities=10% Similarity=0.088 Sum_probs=63.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+++++||.|| |+||++|+...|.+.++.+++.. .+.++-|+.|... . |
T Consensus 13 ~~~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~-----------------------~------d- 60 (103)
T PHA02278 13 QKKDVIVMIT-QDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAED-----------------------V------D- 60 (103)
T ss_pred CCCcEEEEEE-CCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccc-----------------------c------c-
Confidence 5789999999 99999999999999999877542 4678888887411 0 1
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
...+++.|++. .+|+++++ ++|+.+....|..
T Consensus 61 ~~~l~~~~~I~------~iPT~i~f-k~G~~v~~~~G~~ 92 (103)
T PHA02278 61 REKAVKLFDIM------STPVLIGY-KDGQLVKKYEDQV 92 (103)
T ss_pred cHHHHHHCCCc------cccEEEEE-ECCEEEEEEeCCC
Confidence 24688999999 99988888 5799998876643
|
|
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-10 Score=84.97 Aligned_cols=98 Identities=19% Similarity=0.184 Sum_probs=64.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHH--hcCcEEEEEeCCChHhH-HHHHHHhhccccccccCCCCCcceeEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH--KIGAEVVGVSVDSHFTH-RAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~--~~~~~vl~Vs~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.||++|+.|| +.|||+|+...+.+.+..+--. +.++.++.++.+..... ..+.... +. ..+
T Consensus 4 ~~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~ 67 (112)
T PF13098_consen 4 NGKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFD-------------GQ--KNV 67 (112)
T ss_dssp TSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHT-------------CH--SSC
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccc-------------cc--hhh
Confidence 4899999999 9999999988888876544211 23688888888765432 2232211 11 111
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
.....++.+.||+. .+|+++++|++|++++...|..+
T Consensus 68 ~~~~~~l~~~~~v~------gtPt~~~~d~~G~~v~~~~G~~~ 104 (112)
T PF13098_consen 68 RLSNKELAQRYGVN------GTPTIVFLDKDGKIVYRIPGYLS 104 (112)
T ss_dssp HHHHHHHHHHTT--------SSSEEEECTTTSCEEEEEESS--
T ss_pred hHHHHHHHHHcCCC------ccCEEEEEcCCCCEEEEecCCCC
Confidence 11235899999999 99999999999999988766654
|
... |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.2e-10 Score=82.67 Aligned_cols=88 Identities=13% Similarity=0.236 Sum_probs=66.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+||+++|.|| ++||++|+...|.+.++++++++.++.++.|+.|..
T Consensus 20 ~~k~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--------------------------------- 65 (109)
T cd02993 20 RNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--------------------------------- 65 (109)
T ss_pred cCCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc---------------------------------
Confidence 4789999999 999999999999999999999866788888877640
Q ss_pred CchHHH-HhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHH
Q psy15453 161 THEISR-DYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRL 211 (247)
Q Consensus 161 ~~~~~~-~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~ 211 (247)
+..+.+ .|++. .+|++++++++++....+.|+ ..+.+.++..
T Consensus 66 ~~~~~~~~~~v~------~~Pti~~f~~~~~~~~~y~g~---~~~~~~l~~f 108 (109)
T cd02993 66 QREFAKEELQLK------SFPTILFFPKNSRQPIKYPSE---QRDVDSLLMF 108 (109)
T ss_pred chhhHHhhcCCC------cCCEEEEEcCCCCCceeccCC---CCCHHHHHhh
Confidence 112333 47888 889999998887766555342 2455666544
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.2e-10 Score=82.63 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=67.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.|++++|.|| ++||++|+...|.+.++++++.. .+.++.|+.+.. .
T Consensus 17 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~--------------------------------~ 62 (109)
T cd03002 17 TNYTTLVEFY-APWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDED--------------------------------K 62 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcc--------------------------------c
Confidence 3788999999 99999999999999999999864 578888887641 1
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCc----EEEEEecCCCCCCCHHHHHHHH
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGI----VRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~----v~~~~~~~~~~~~~~~~il~~l 212 (247)
...+.+.|++. .+|+++++++++. +...+.| ..+.+++.+.|
T Consensus 63 ~~~~~~~~~i~------~~Pt~~~~~~~~~~~~~~~~~~~G----~~~~~~l~~fi 108 (109)
T cd03002 63 NKPLCGKYGVQ------GFPTLKVFRPPKKASKHAVEDYNG----ERSAKAIVDFV 108 (109)
T ss_pred cHHHHHHcCCC------cCCEEEEEeCCCcccccccccccC----ccCHHHHHHHh
Confidence 34677889998 8999999988873 3333323 33466666654
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=79.66 Aligned_cols=85 Identities=18% Similarity=0.284 Sum_probs=63.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+|+ ++|.|| ++||++|+...|.+.+++++++..++.+..|+.+.
T Consensus 16 ~~~-~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~---------------------------------- 59 (101)
T cd02994 16 EGE-WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ---------------------------------- 59 (101)
T ss_pred CCC-EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC----------------------------------
Confidence 566 579999 99999999999999999988765567777665542
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVR 213 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~ 213 (247)
+..+.++|++. .+|+++++ ++|++ ..+.|.. ..+++.+.|+
T Consensus 60 ~~~~~~~~~i~------~~Pt~~~~-~~g~~-~~~~G~~----~~~~l~~~i~ 100 (101)
T cd02994 60 EPGLSGRFFVT------ALPTIYHA-KDGVF-RRYQGPR----DKEDLISFIE 100 (101)
T ss_pred CHhHHHHcCCc------ccCEEEEe-CCCCE-EEecCCC----CHHHHHHHHh
Confidence 23567888998 89999887 78986 4444433 3466666554
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >KOG0910|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.3e-10 Score=85.20 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=64.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
++||+|.|| |.||++|+...|.|+++..+|+. .+.+.-|+.|+ .
T Consensus 61 ~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~----------------------------------~ 104 (150)
T KOG0910|consen 61 DVPVLVDFH-AEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDE----------------------------------H 104 (150)
T ss_pred CCCEEEEEe-cCcCccHhHhhHHHHHHHHhhcC-eEEEEEEcccc----------------------------------c
Confidence 689999999 99999999999999999999964 58888877764 3
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
.+++..|++. .+|+++++ ++|..+....|..+
T Consensus 105 ~ela~~Y~I~------avPtvlvf-knGe~~d~~vG~~~ 136 (150)
T KOG0910|consen 105 PELAEDYEIS------AVPTVLVF-KNGEKVDRFVGAVP 136 (150)
T ss_pred cchHhhccee------eeeEEEEE-ECCEEeeeecccCC
Confidence 5788999999 89999999 58988877666554
|
|
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=83.96 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=68.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+...|.|.++++++.. ++.++.|+.+.
T Consensus 51 ~~k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~---------------------------------- 94 (139)
T PRK10996 51 DDLPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEA---------------------------------- 94 (139)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCC----------------------------------
Confidence 4789999999 99999999999999999988864 57777775542
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
...+.++|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+.+
T Consensus 95 ~~~l~~~~~V~------~~Ptlii~-~~G~~v~~~~G~~~----~e~l~~~l~~~ 138 (139)
T PRK10996 95 ERELSARFRIR------SIPTIMIF-KNGQVVDMLNGAVP----KAPFDSWLNEA 138 (139)
T ss_pred CHHHHHhcCCC------ccCEEEEE-ECCEEEEEEcCCCC----HHHHHHHHHHh
Confidence 24678889998 89998887 58999988766533 45666666543
|
|
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=80.29 Aligned_cols=88 Identities=14% Similarity=0.211 Sum_probs=63.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcC--cEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG--AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~--~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
++++++|.|| ++||++|+..+|.+++++++++..+ +.+..++.+.
T Consensus 14 ~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~-------------------------------- 60 (104)
T cd03000 14 KEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA-------------------------------- 60 (104)
T ss_pred cCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc--------------------------------
Confidence 4678999999 9999999999999999999997544 4444444432
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
...+.+.|++. .+|++++++ +|.+ ..+.|. ...+++.+.++.+
T Consensus 61 --~~~~~~~~~I~------~~Pt~~l~~-~~~~-~~~~G~----~~~~~l~~~~~~~ 103 (104)
T cd03000 61 --YSSIASEFGVR------GYPTIKLLK-GDLA-YNYRGP----RTKDDIVEFANRV 103 (104)
T ss_pred --CHhHHhhcCCc------cccEEEEEc-CCCc-eeecCC----CCHHHHHHHHHhh
Confidence 23667889998 899999994 4543 444343 2356777776653
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-09 Score=83.26 Aligned_cols=107 Identities=13% Similarity=0.174 Sum_probs=78.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.++++||.|| ++||++|+...|.|.++.+++++ -+.|+-|+.|.
T Consensus 22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~-~~~~~kVDVDe---------------------------------- 65 (142)
T PLN00410 22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKN-FAVIYLVDITE---------------------------------- 65 (142)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCC----------------------------------
Confidence 4689999999 99999999999999999999863 26777887764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCc-EEEEEecCCC----CCCCHHHHHHHHHhhhcccccC---CccCCCC
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGI-VRQITLNDLP----VGRSVEETLRLVRAFQYTDEHG---EACPSGW 229 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~-v~~~~~~~~~----~~~~~~~il~~l~~l~~~~~~~---~~~~~~~ 229 (247)
..++++.|++. ..|+++++=++|+ .+....|... ...+.+++++.++.+.....+| ..||-++
T Consensus 66 ~~dla~~y~I~------~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~~~~~~~~~ 136 (142)
T PLN00410 66 VPDFNTMYELY------DPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVISPKDY 136 (142)
T ss_pred CHHHHHHcCcc------CCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhcCCeEEECCCcc
Confidence 35788888887 6677774447887 6666555321 1345688888888877665554 5566655
|
|
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.3e-10 Score=81.70 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=60.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+++++|.|| ++||++|+...|.+.++.++++. .+.|..|+.|.
T Consensus 17 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~---------------------------------- 60 (101)
T cd03003 17 SGEIWFVNFY-SPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGD---------------------------------- 60 (101)
T ss_pred CCCeEEEEEE-CCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCc----------------------------------
Confidence 4689999999 99999999999999999999974 47888888764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEec
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLN 197 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~ 197 (247)
...+.+.|++. .+|+++++ ++|+....+.|
T Consensus 61 ~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G 90 (101)
T cd03003 61 DRMLCRSQGVN------SYPSLYVF-PSGMNPEKYYG 90 (101)
T ss_pred cHHHHHHcCCC------ccCEEEEE-cCCCCcccCCC
Confidence 13567788888 88999888 68876655434
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-09 Score=78.86 Aligned_cols=77 Identities=9% Similarity=0.061 Sum_probs=62.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+++++|.|| ++||++|+...|.+.++.++++. .+.+..|+.+.
T Consensus 18 ~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~---------------------------------- 61 (104)
T cd03004 18 RKEPWLVDFY-APWCGPCQALLPELRKAARALKG-KVKVGSVDCQK---------------------------------- 61 (104)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCc----------------------------------
Confidence 3679999999 99999999999999999999853 57777777653
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
...+.+.|++. .+|+++++.++|+....+.|..
T Consensus 62 ~~~~~~~~~i~------~~Pt~~~~~~g~~~~~~~~G~~ 94 (104)
T cd03004 62 YESLCQQANIR------AYPTIRLYPGNASKYHSYNGWH 94 (104)
T ss_pred hHHHHHHcCCC------cccEEEEEcCCCCCceEccCCC
Confidence 23567888898 8999999987657777765543
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=82.60 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=57.1
Q ss_pred CCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 78 TDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 78 ~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
+.-.||+++|.|| ++||++|+...|.+.+..+... .+..++.|..|...
T Consensus 15 A~~~~kpVlV~F~-a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~----------------------------- 63 (117)
T cd02959 15 AKDSGKPLMLLIH-KTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDE----------------------------- 63 (117)
T ss_pred HHHcCCcEEEEEe-CCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCC-----------------------------
Confidence 3346899999999 9999999999999999766554 24567777665411
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEec
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLN 197 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~ 197 (247)
....+.|++. |..+|+++++|++|+++..+.+
T Consensus 64 ----~~~~~~~~~~----g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 64 ----EPKDEEFSPD----GGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred ----CchhhhcccC----CCccceEEEECCCCCCchhhcc
Confidence 0112244443 1137999999999999886543
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.8e-09 Score=76.65 Aligned_cols=77 Identities=17% Similarity=0.221 Sum_probs=62.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|++++.|| ++||+.|+...|.+.++.+++.. ++.++.|+.|.
T Consensus 12 ~~~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~---------------------------------- 55 (97)
T cd02949 12 SDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE---------------------------------- 55 (97)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC----------------------------------
Confidence 4789999999 99999999999999999999864 57777776653
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
+.++.+.|++. .+|+.++++ +|+++....|..+
T Consensus 56 ~~~l~~~~~v~------~vPt~~i~~-~g~~v~~~~g~~~ 88 (97)
T cd02949 56 DQEIAEAAGIM------GTPTVQFFK-DKELVKEISGVKM 88 (97)
T ss_pred CHHHHHHCCCe------eccEEEEEE-CCeEEEEEeCCcc
Confidence 23567788888 899999995 7998877755443
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-09 Score=77.73 Aligned_cols=75 Identities=11% Similarity=0.189 Sum_probs=59.4
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh--cCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 84 YLVFFFYPLDFTFVCPTEVLALNEKIDEFHK--IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 84 ~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~--~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++|.|| ++||++|+..+|.+++++++++. ..+.++.|+.+. .
T Consensus 18 ~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------------~ 62 (102)
T cd03005 18 NHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ----------------------------------H 62 (102)
T ss_pred CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC----------------------------------C
Confidence 5899999 99999999999999999999975 356777665542 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
..+.+.|++. .+|+++++ ++|+.+..+.|..+
T Consensus 63 ~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~~~ 94 (102)
T cd03005 63 RELCSEFQVR------GYPTLLLF-KDGEKVDKYKGTRD 94 (102)
T ss_pred hhhHhhcCCC------cCCEEEEE-eCCCeeeEeeCCCC
Confidence 3567788888 89999999 67887777666543
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.8e-09 Score=83.85 Aligned_cols=81 Identities=7% Similarity=0.115 Sum_probs=60.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
++++++|.|| ++||++|+...|.+.++.+++...++.++.|+.|..
T Consensus 46 ~~~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~--------------------------------- 91 (152)
T cd02962 46 KRVTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF--------------------------------- 91 (152)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC---------------------------------
Confidence 4679999999 999999999999999999999766799999988752
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEec
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLN 197 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~ 197 (247)
..+.+.|++...-.-..+|+++++ ++|+.+....|
T Consensus 92 -~~la~~~~V~~~~~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 92 -PNVAEKFRVSTSPLSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred -HHHHHHcCceecCCcCCCCEEEEE-ECCEEEEEEec
Confidence 234444554400000048988888 58998888765
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >KOG0907|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.7e-09 Score=78.09 Aligned_cols=75 Identities=15% Similarity=0.276 Sum_probs=64.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|.+|+.|+ |+||++|+...|.+.++..+|. ++.|+-|+.|.
T Consensus 20 ~~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~--~v~Flkvdvde---------------------------------- 62 (106)
T KOG0907|consen 20 GDKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYP--DVVFLKVDVDE---------------------------------- 62 (106)
T ss_pred CCCeEEEEEE-CCCCcchhhhhhHHHHHHHHCC--CCEEEEEeccc----------------------------------
Confidence 3689999998 9999999999999999999998 49999998874
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
...+++.|++. .+|++.++ ++|+.+....|..
T Consensus 63 ~~~~~~~~~V~------~~PTf~f~-k~g~~~~~~vGa~ 94 (106)
T KOG0907|consen 63 LEEVAKEFNVK------AMPTFVFY-KGGEEVDEVVGAN 94 (106)
T ss_pred CHhHHHhcCce------EeeEEEEE-ECCEEEEEEecCC
Confidence 14678889999 89999888 7888887775544
|
|
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.9e-09 Score=75.25 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=63.7
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++++|.|| ++||++|+...+.|.++.+++ ..++.++.|+.+. .
T Consensus 14 ~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~----------------------------------~ 57 (97)
T cd02984 14 SKLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEE----------------------------------L 57 (97)
T ss_pred CCEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEcccc----------------------------------C
Confidence 689999999 999999999999999999887 3367777765431 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
..+.++|++. .+|++++++ +|+++....|. +.+++.+.|
T Consensus 58 ~~~~~~~~i~------~~Pt~~~~~-~g~~~~~~~g~-----~~~~l~~~~ 96 (97)
T cd02984 58 PEISEKFEIT------AVPTFVFFR-NGTIVDRVSGA-----DPKELAKKV 96 (97)
T ss_pred HHHHHhcCCc------cccEEEEEE-CCEEEEEEeCC-----CHHHHHHhh
Confidence 4677889998 899988885 89998887553 235555443
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.5e-09 Score=75.83 Aligned_cols=79 Identities=11% Similarity=0.181 Sum_probs=59.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh-cCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK-IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~-~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
++++++|.|| ++||++|+...|.++++.+++++ ..+.++.|+.+. +
T Consensus 16 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--------------------------------~ 62 (104)
T cd02997 16 KEKHVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--------------------------------P 62 (104)
T ss_pred hCCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--------------------------------C
Confidence 4679999999 99999999999999999999874 235555555542 1
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
....+.+.|++. .+|+++++ ++|+++..+.|..
T Consensus 63 ~~~~~~~~~~i~------~~Pt~~~~-~~g~~~~~~~g~~ 95 (104)
T cd02997 63 EHDALKEEYNVK------GFPTFKYF-ENGKFVEKYEGER 95 (104)
T ss_pred ccHHHHHhCCCc------cccEEEEE-eCCCeeEEeCCCC
Confidence 135677889988 88986666 6788777664543
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.1e-09 Score=75.57 Aligned_cols=88 Identities=13% Similarity=0.174 Sum_probs=65.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcC-cEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG-AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~-~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
++++++|.|| ++||+.|+...+.++++.+.++..+ +.++.+..+.
T Consensus 12 ~~~~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--------------------------------- 57 (102)
T TIGR01126 12 SNKDVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA--------------------------------- 57 (102)
T ss_pred cCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc---------------------------------
Confidence 6889999999 9999999999999999999887543 5555544432
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
...+.+.|++. .+|+++++++++. ...+.|. ...+++...|+.
T Consensus 58 -~~~~~~~~~i~------~~P~~~~~~~~~~-~~~~~g~----~~~~~l~~~i~~ 100 (102)
T TIGR01126 58 -EKDLASRFGVS------GFPTIKFFPKGKK-PVDYEGG----RDLEAIVEFVNE 100 (102)
T ss_pred -hHHHHHhCCCC------cCCEEEEecCCCc-ceeecCC----CCHHHHHHHHHh
Confidence 24677889998 8999999998887 4444343 235666666654
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-08 Score=74.81 Aligned_cols=92 Identities=16% Similarity=0.184 Sum_probs=67.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|++||.|+ ++||++|+..-|.|.++..+|++. +.|+-|..|.
T Consensus 13 ~~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDe---------------------------------- 56 (114)
T cd02986 13 AEKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDK---------------------------------- 56 (114)
T ss_pred CCCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccc----------------------------------
Confidence 5899999999 999999999999999999999632 8888888874
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCC------CCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPV------GRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~------~~~~~~il~~l~~l 215 (247)
..++.+.|++. ..|+++++ ++|+-..+-.|-.+. -.+-++.++.++.+
T Consensus 57 v~dva~~y~I~------amPtfvff-kngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 57 VPVYTQYFDIS------YIPSTIFF-FNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred cHHHHHhcCce------eCcEEEEE-ECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 24677888887 78988877 556655554433221 22335666665543
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6e-09 Score=75.43 Aligned_cols=74 Identities=19% Similarity=0.290 Sum_probs=60.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+++++|.|| ++||++|+...+.+.++++++. ++.++.|+.+.
T Consensus 17 ~~~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~---------------------------------- 59 (98)
T PTZ00051 17 QNELVIVDFY-AEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDE---------------------------------- 59 (98)
T ss_pred cCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcc----------------------------------
Confidence 3679999999 9999999999999999998764 57777776542
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecC
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLND 198 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~ 198 (247)
...+.++|++. .+|+++++ ++|+++..+.|.
T Consensus 60 ~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~ 90 (98)
T PTZ00051 60 LSEVAEKENIT------SMPTFKVF-KNGSVVDTLLGA 90 (98)
T ss_pred hHHHHHHCCCc------eeeEEEEE-eCCeEEEEEeCC
Confidence 24677889998 88986666 799999888664
|
|
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.6e-09 Score=77.12 Aligned_cols=75 Identities=3% Similarity=0.001 Sum_probs=59.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.++++||.|| |+||++|+..+|.+.++.+++++ .+.|..|+.|.
T Consensus 28 ~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~---------------------------------- 71 (113)
T cd03006 28 DAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWW---------------------------------- 71 (113)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------------------
Confidence 4679999999 99999999999999999999974 37788887764
Q ss_pred CchHH-HHhCCcccCCCccceeEEEEcCCCcEEEEEecC
Q psy15453 161 THEIS-RDYGVYLEDKGHSLRGLFIIDREGIVRQITLND 198 (247)
Q Consensus 161 ~~~~~-~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~ 198 (247)
+..+. +.|++. .+|+..++ ++|+....+.|.
T Consensus 72 ~~~l~~~~~~I~------~~PTl~lf-~~g~~~~~y~G~ 103 (113)
T cd03006 72 PQGKCRKQKHFF------YFPVIHLY-YRSRGPIEYKGP 103 (113)
T ss_pred ChHHHHHhcCCc------ccCEEEEE-ECCccceEEeCC
Confidence 12455 578888 88998888 678866555443
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-08 Score=75.47 Aligned_cols=84 Identities=18% Similarity=0.222 Sum_probs=61.3
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc-----CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeE
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI-----GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPL 156 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~-----~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (247)
+++++|.|| ++||++|+...|.++++++++++. .+.+..|+.|
T Consensus 18 ~~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d------------------------------- 65 (108)
T cd02996 18 AELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD------------------------------- 65 (108)
T ss_pred CCEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC-------------------------------
Confidence 678999999 999999999999999999888632 2444444443
Q ss_pred EecCCchHHHHhCCcccCCCccceeEEEEcCCCcEE-EEEecCCCCCCCHHHHHHH
Q psy15453 157 LSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVR-QITLNDLPVGRSVEETLRL 211 (247)
Q Consensus 157 l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~-~~~~~~~~~~~~~~~il~~ 211 (247)
.+..+.++|++. .+|+++++ ++|++. ..+.| ..+.+++.+.
T Consensus 66 ---~~~~l~~~~~v~------~~Ptl~~~-~~g~~~~~~~~g----~~~~~~l~~f 107 (108)
T cd02996 66 ---KESDIADRYRIN------KYPTLKLF-RNGMMMKREYRG----QRSVEALAEF 107 (108)
T ss_pred ---CCHHHHHhCCCC------cCCEEEEE-eCCcCcceecCC----CCCHHHHHhh
Confidence 335788999998 89999998 688844 33322 3345665543
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-08 Score=72.39 Aligned_cols=86 Identities=20% Similarity=0.337 Sum_probs=66.6
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++++|.|| ++||++|+...+.+.++.+++.. ++.++.|..+. +
T Consensus 14 ~~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------------~ 57 (101)
T TIGR01068 14 DKPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDE----------------------------------N 57 (101)
T ss_pred CCcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCC----------------------------------C
Confidence 568999999 99999999999999999988863 58888887653 1
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
..+.++|++. .+|+++++ ++|++.....|.. +.+++.+.|+.
T Consensus 58 ~~~~~~~~v~------~~P~~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~ 99 (101)
T TIGR01068 58 PDIAAKYGIR------SIPTLLLF-KNGKEVDRSVGAL----PKAALKQLINK 99 (101)
T ss_pred HHHHHHcCCC------cCCEEEEE-eCCcEeeeecCCC----CHHHHHHHHHh
Confidence 3566788888 89999999 6888877665543 34666666654
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-08 Score=72.19 Aligned_cols=86 Identities=19% Similarity=0.337 Sum_probs=69.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
++++||.|+ +.||++|+...|.+.++.+++.+ ++.++-|+.+. .
T Consensus 17 ~~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~----------------------------------~ 60 (103)
T PF00085_consen 17 DKPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE----------------------------------N 60 (103)
T ss_dssp SSEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------------S
T ss_pred CCCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhhhc----------------------------------c
Confidence 689999999 99999999999999999999987 78888887753 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
..+.+.|++. .+|+++++. +|+....+.|.. +.+++.+.|+.
T Consensus 61 ~~l~~~~~v~------~~Pt~~~~~-~g~~~~~~~g~~----~~~~l~~~i~~ 102 (103)
T PF00085_consen 61 KELCKKYGVK------SVPTIIFFK-NGKEVKRYNGPR----NAESLIEFIEK 102 (103)
T ss_dssp HHHHHHTTCS------SSSEEEEEE-TTEEEEEEESSS----SHHHHHHHHHH
T ss_pred chhhhccCCC------CCCEEEEEE-CCcEEEEEECCC----CHHHHHHHHHc
Confidence 4688999998 899999995 677766665542 36777777753
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-08 Score=74.20 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=60.1
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHH-hcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH-KIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~-~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+++++|.|| ++||++|+...|.+.++.++++ ..++.++.|+.+.+
T Consensus 18 ~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--------------------------------- 63 (105)
T cd02998 18 KKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--------------------------------- 63 (105)
T ss_pred CCcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc---------------------------------
Confidence 568999999 9999999999999999999987 33567766665431
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEec
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLN 197 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~ 197 (247)
...+.++|++. .+|++++++++|+....+.|
T Consensus 64 ~~~~~~~~~i~------~~P~~~~~~~~~~~~~~~~g 94 (105)
T cd02998 64 NKDLAKKYGVS------GFPTLKFFPKGSTEPVKYEG 94 (105)
T ss_pred chhhHHhCCCC------CcCEEEEEeCCCCCccccCC
Confidence 24678889988 89999999888766555544
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.7e-09 Score=77.37 Aligned_cols=78 Identities=13% Similarity=0.145 Sum_probs=61.1
Q ss_pred CCCeEEEEEEeC-------CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcc
Q psy15453 81 RGKYLVFFFYPL-------DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLK 153 (247)
Q Consensus 81 ~gk~vvl~F~~a-------~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (247)
+|++++|.|| | +||++|+...|.+.++.++++. ++.++-|..|...
T Consensus 20 ~~~~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~------------------------- 72 (119)
T cd02952 20 EGKPIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRP------------------------- 72 (119)
T ss_pred CCCeEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcc-------------------------
Confidence 5889999999 9 9999999999999999999873 5899999887511
Q ss_pred eeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEE
Q psy15453 154 IPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVR 192 (247)
Q Consensus 154 ~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~ 192 (247)
...|++..+.+.|++. . .+|++++++..++++
T Consensus 73 --~w~d~~~~~~~~~~I~-~----~iPT~~~~~~~~~l~ 104 (119)
T cd02952 73 --YWRDPNNPFRTDPKLT-T----GVPTLLRWKTPQRLV 104 (119)
T ss_pred --cccCcchhhHhccCcc-c----CCCEEEEEcCCceec
Confidence 1223456777888875 2 689999996655554
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-07 Score=71.28 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=62.3
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++++|.|| ++||++|+...|.|.++.+++. ++.++-|+.+. .
T Consensus 22 ~~~vvV~f~-a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~----------------------------------~ 64 (113)
T cd02989 22 SERVVCHFY-HPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEK----------------------------------A 64 (113)
T ss_pred CCcEEEEEE-CCCCccHHHHHHHHHHHHHHcC--CCEEEEEEccc----------------------------------C
Confidence 578999999 9999999999999999999885 57888777653 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
..++++|++. .+|+++++ ++|+++....|..+
T Consensus 65 ~~l~~~~~v~------~vPt~l~f-k~G~~v~~~~g~~~ 96 (113)
T cd02989 65 PFLVEKLNIK------VLPTVILF-KNGKTVDRIVGFEE 96 (113)
T ss_pred HHHHHHCCCc------cCCEEEEE-ECCEEEEEEECccc
Confidence 4688999999 89999888 58888887766543
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.4e-08 Score=82.48 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=66.1
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++++|.|| ++||++|+...|.+++++++++. .+.+..|+.+. +
T Consensus 52 ~~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~----------------------------------~ 95 (224)
T PTZ00443 52 TGPWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADLDATR----------------------------------A 95 (224)
T ss_pred CCCEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcc----------------------------------c
Confidence 578999999 99999999999999999999874 35555443331 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
..+.++|++. .+|++++++ +|++.....| ..+.+++.+.+++.-
T Consensus 96 ~~l~~~~~I~------~~PTl~~f~-~G~~v~~~~G----~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 96 LNLAKRFAIK------GYPTLLLFD-KGKMYQYEGG----DRSTEKLAAFALGDF 139 (224)
T ss_pred HHHHHHcCCC------cCCEEEEEE-CCEEEEeeCC----CCCHHHHHHHHHHHH
Confidence 4678899998 899999997 7887765433 234577777765543
|
|
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=98.81 E-value=3e-08 Score=75.25 Aligned_cols=83 Identities=10% Similarity=0.060 Sum_probs=58.4
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh-----HHHHHHHhhccccccccCCCCCcceeE
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT-----HRAWINSLKKDNSLKKDNRLDKLKIPL 156 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (247)
|+.++++|+ ++|||+|+...|.|.++.++. ++.++.|+.|.... .+++
T Consensus 23 ~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~----------------------- 75 (122)
T TIGR01295 23 KETATFFIG-RKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDL----------------------- 75 (122)
T ss_pred CCcEEEEEE-CCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHH-----------------------
Confidence 678899999 999999999999999998872 57899998874210 0011
Q ss_pred EecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 157 LSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 157 l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
.++.+.|++... -..+|+++++ ++|+.+....|..
T Consensus 76 -----~~~~~~~~i~~~--i~~~PT~v~~-k~Gk~v~~~~G~~ 110 (122)
T TIGR01295 76 -----TAFRSRFGIPTS--FMGTPTFVHI-TDGKQVSVRCGSS 110 (122)
T ss_pred -----HHHHHHcCCccc--CCCCCEEEEE-eCCeEEEEEeCCC
Confidence 234444443200 0168999988 6898888886753
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-08 Score=75.02 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=59.4
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++++|.|| ++||++|+...|.+.++.+++. ++.++-|+.+. .
T Consensus 24 ~~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~----------------------------------~ 66 (113)
T cd02957 24 GTRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAEK----------------------------------A 66 (113)
T ss_pred CCEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchh----------------------------------h
Confidence 579999999 9999999999999999999985 57777666542 1
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
.+++.|++. .+|+++++ ++|+++....|..
T Consensus 67 -~l~~~~~i~------~~Pt~~~f-~~G~~v~~~~G~~ 96 (113)
T cd02957 67 -FLVNYLDIK------VLPTLLVY-KNGELIDNIVGFE 96 (113)
T ss_pred -HHHHhcCCC------cCCEEEEE-ECCEEEEEEecHH
Confidence 566788888 88988887 6899998876643
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-08 Score=71.48 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=63.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHH-hcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH-KIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~-~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
++++++|.|| +.||++|+...+.+.++.+.++ ..++.++.|+.+.
T Consensus 14 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------------------------------- 59 (101)
T cd02961 14 DSKDVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA--------------------------------- 59 (101)
T ss_pred CCCcEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc---------------------------------
Confidence 3568999999 9999999999999999999885 3467777776542
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLR 210 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~ 210 (247)
+..+.+.|++. .+|++++++++|+....+.|. .+.+++.+
T Consensus 60 -~~~~~~~~~i~------~~Pt~~~~~~~~~~~~~~~g~----~~~~~i~~ 99 (101)
T cd02961 60 -NNDLCSEYGVR------GYPTIKLFPNGSKEPVKYEGP----RTLESLVE 99 (101)
T ss_pred -hHHHHHhCCCC------CCCEEEEEcCCCcccccCCCC----cCHHHHHh
Confidence 24677888888 889999999887555444333 24555554
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.5e-08 Score=73.46 Aligned_cols=86 Identities=6% Similarity=0.059 Sum_probs=66.3
Q ss_pred CeEEEEEEeCCCCCC--cH--HHHHHHHHHHHHH-HhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 83 KYLVFFFYPLDFTFV--CP--TEVLALNEKIDEF-HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 83 k~vvl~F~~a~~Cp~--C~--~~~~~l~~l~~~~-~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.++|+.|| ++||++ |+ ...|.|.++..++ ++.++.|.-|+.|.
T Consensus 28 ~~vvv~f~-a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~------------------------------- 75 (120)
T cd03065 28 VLCLLYHE-PVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK------------------------------- 75 (120)
T ss_pred ceEEEEEC-CCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC-------------------------------
Confidence 47788888 999987 99 7778888888776 34468888887764
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..++++||+. .+|+++++ ++|+++. +.|.. ..+.+.+.|+.+
T Consensus 76 ---~~~La~~~~I~------~iPTl~lf-k~G~~v~-~~G~~----~~~~l~~~l~~~ 118 (120)
T cd03065 76 ---DAKVAKKLGLD------EEDSIYVF-KDDEVIE-YDGEF----AADTLVEFLLDL 118 (120)
T ss_pred ---CHHHHHHcCCc------cccEEEEE-ECCEEEE-eeCCC----CHHHHHHHHHHH
Confidence 35889999999 99999999 5899876 54543 357777777765
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.6e-08 Score=73.62 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=55.4
Q ss_pred CceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 61 YWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 61 ~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+|+. .|.+|+.++|++|+||++||+.. |+.|+.-. +...|++++++|+++|++||++..+.
T Consensus 3 df~~---~~~~G~~v~l~~y~Gkv~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 3 DFSA---KDIDGKPVSLSKYKGKVLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GSEE---EBTTSSEEEGGGGTTSEEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred ceee---eCCCCCEECHHHcCCCEEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 5776 45599999999999999999999 99999999 99999999999999999999997643
|
11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C .... |
| >PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1 | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-07 Score=78.49 Aligned_cols=144 Identities=22% Similarity=0.302 Sum_probs=103.2
Q ss_pred cccccCCCCCCceeeeeecCCcee-EEcCCCC--CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC---
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKE-IKLTDYR--GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV--- 124 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~-v~l~~~~--gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~--- 124 (247)
.....|..||+..+.++ +|+. .++-||. +||.||+|. +.-||+-...+..++++.++|.+ -+.++.|-.
T Consensus 71 ~~a~~G~~APns~vv~l---~g~~~~~ildf~~g~RPLVlnFG-S~TCPpF~~~l~~f~~l~~~f~d-~adFl~VYI~EA 145 (237)
T PF00837_consen 71 KEAKLGGPAPNSPVVTL---DGQRSCRILDFAKGNRPLVLNFG-SCTCPPFMAKLDAFKRLVEDFSD-VADFLIVYIEEA 145 (237)
T ss_pred cceeCCCCCCCCceEee---CCCcceeHHHhccCCCCeEEEcc-cccchHHHHHHHHHHHHHHHhhh-hhheehhhHhhh
Confidence 34688999999999555 8888 9999994 679999999 66699999999999999999985 245555521
Q ss_pred ---C------------ChHhHHHHHHHhhccccccccCCCCCcceeEEecC-CchHHHHhCCcccCCCccceeEEEEcCC
Q psy15453 125 ---D------------SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL-THEISRDYGVYLEDKGHSLRGLFIIDRE 188 (247)
Q Consensus 125 ---d------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~~~~~~~~~~~~~~~g~~~p~~~lId~~ 188 (247)
| ...++++.....+. ++++ ....+++.|. +....+.||...+ ..||| ++
T Consensus 146 HpsDgW~~~~~~~~i~qh~sledR~~aA~~---l~~~----~~~~pi~vD~mdN~~~~~YgA~Pe-------RlyIi-~~ 210 (237)
T PF00837_consen 146 HPSDGWAFGNNPYEIPQHRSLEDRLRAAKL---LKEE----FPQCPIVVDTMDNNFNKAYGALPE-------RLYII-QD 210 (237)
T ss_pred CcCCCccCCCCceeecCCCCHHHHHHHHHH---HHhh----CCCCCEEEEccCCHHHHHhCCCcc-------eEEEE-EC
Confidence 1 11222222222211 1112 2577888876 4889999999822 57777 49
Q ss_pred CcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 189 GIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 189 G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
|+|+|.. |+-+..-+.+|+-+.|+..
T Consensus 211 gkv~Y~G-g~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 211 GKVVYKG-GPGPFGYSPEELREWLEKY 236 (237)
T ss_pred CEEEEeC-CCCCCcCCHHHHHHHHHhc
Confidence 9999986 5556777789998888764
|
97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process |
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.3e-08 Score=69.84 Aligned_cols=84 Identities=14% Similarity=0.197 Sum_probs=61.5
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++++|.|| ++||++|+...|.+.++.+++.. .+.+..++.+. .
T Consensus 18 ~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~----------------------------------~ 61 (103)
T cd03001 18 DDVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADV----------------------------------H 61 (103)
T ss_pred CCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcc----------------------------------h
Confidence 567999999 99999999999999999998864 47777776542 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHH
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRL 211 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~ 211 (247)
..+.++|++. .+|++++++++......+.| ..+.+++.+.
T Consensus 62 ~~~~~~~~i~------~~P~~~~~~~~~~~~~~~~g----~~~~~~l~~~ 101 (103)
T cd03001 62 QSLAQQYGVR------GFPTIKVFGAGKNSPQDYQG----GRTAKAIVSA 101 (103)
T ss_pred HHHHHHCCCC------ccCEEEEECCCCcceeecCC----CCCHHHHHHH
Confidence 4667888898 89999999765343333333 3445666554
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-07 Score=70.99 Aligned_cols=100 Identities=7% Similarity=-0.136 Sum_probs=62.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.||+++|.|+ ++||+.|+..-... .++.+.+. +++.+|-|..+...+.. +.+
T Consensus 14 ~~KpVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~~~~~~---~~~-------------------- 68 (124)
T cd02955 14 EDKPIFLSIG-YSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREERPDVD---KIY-------------------- 68 (124)
T ss_pred cCCeEEEEEc-cCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCcCcHHH---HHH--------------------
Confidence 5899999999 99999999876532 24555443 35666666554322111 100
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC----CCCCCHHHHHHHHHh
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL----PVGRSVEETLRLVRA 214 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~----~~~~~~~~il~~l~~ 214 (247)
.......||+. ..|+++++|++|++++...+-. -.+....++++.|+.
T Consensus 69 ---~~~~~~~~~~~------G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd02955 69 ---MNAAQAMTGQG------GWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRE 120 (124)
T ss_pred ---HHHHHHhcCCC------CCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHH
Confidence 01222356777 8899999999999998763221 123445666666654
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.4e-08 Score=72.42 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=51.3
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
++.+++.|| ++||++|+...|.+.++.+++. .+.+..|+.|. .
T Consensus 22 ~~~vvv~f~-a~wC~~C~~~~~~l~~la~~~~--~i~~~~vd~d~----------------------------------~ 64 (113)
T cd02975 22 PVDLVVFSS-KEGCQYCEVTKQLLEELSELSD--KLKLEIYDFDE----------------------------------D 64 (113)
T ss_pred CeEEEEEeC-CCCCCChHHHHHHHHHHHHhcC--ceEEEEEeCCc----------------------------------C
Confidence 456777778 9999999999999999988763 57777776653 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCC
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDRE 188 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~ 188 (247)
..+.+.|++. .+|++++.+.+
T Consensus 65 ~~l~~~~~v~------~vPt~~i~~~g 85 (113)
T cd02975 65 KEKAEKYGVE------RVPTTIFLQDG 85 (113)
T ss_pred HHHHHHcCCC------cCCEEEEEeCC
Confidence 4678899999 89999999754
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=98.75 E-value=6e-08 Score=71.97 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=63.6
Q ss_pred CCCeEEEEEEeCCC--CCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDF--TFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~--Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
.|.++||.|| +.| ||+|+...|.|.++.++|.+ .+.++-|+.|.
T Consensus 26 ~~~~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~-~v~f~kVdid~-------------------------------- 71 (111)
T cd02965 26 AGGDLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPG-RFRAAVVGRAD-------------------------------- 71 (111)
T ss_pred CCCCEEEEec-CCcccCcchhhhHhHHHHHHHHCCC-cEEEEEEECCC--------------------------------
Confidence 4678899999 997 99999999999999999974 36677776654
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
+..++..|++. .+|+++++ ++|+++....|..+
T Consensus 72 --~~~la~~f~V~------sIPTli~f-kdGk~v~~~~G~~~ 104 (111)
T cd02965 72 --EQALAARFGVL------RTPALLFF-RDGRYVGVLAGIRD 104 (111)
T ss_pred --CHHHHHHcCCC------cCCEEEEE-ECCEEEEEEeCccC
Confidence 35888999999 99998888 68999988866544
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.3e-08 Score=83.64 Aligned_cols=89 Identities=13% Similarity=0.223 Sum_probs=69.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+-+|||+.|| ++||++|+.-+|.|.++..+|+. .+.+.-|++|.
T Consensus 42 ~~~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~---------------------------------- 85 (304)
T COG3118 42 REVPVLVDFW-APWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDA---------------------------------- 85 (304)
T ss_pred cCCCeEEEec-CCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCc----------------------------------
Confidence 4569999999 99999999999999999999974 46666666653
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
...+..+||+. .+|++|++ ++|+-+.-+.|..+ -+.+-++|+.+-
T Consensus 86 ~p~vAaqfgiq------sIPtV~af-~dGqpVdgF~G~qP----esqlr~~ld~~~ 130 (304)
T COG3118 86 EPMVAAQFGVQ------SIPTVYAF-KDGQPVDGFQGAQP----ESQLRQFLDKVL 130 (304)
T ss_pred chhHHHHhCcC------cCCeEEEe-eCCcCccccCCCCc----HHHHHHHHHHhc
Confidence 46889999999 99999999 78998877756554 234444454443
|
|
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.7e-08 Score=93.15 Aligned_cols=96 Identities=14% Similarity=0.188 Sum_probs=70.5
Q ss_pred CCCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcce
Q psy15453 78 TDYRGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKI 154 (247)
Q Consensus 78 ~~~~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (247)
+..+||+++|+|| ++||++|+...+.. .+++++++ ++.++-|+.+..+
T Consensus 470 a~~~gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~-------------------------- 520 (571)
T PRK00293 470 AKGKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANN-------------------------- 520 (571)
T ss_pred HHhcCCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCC--------------------------
Confidence 3446899999999 99999999887764 56666764 6778777765411
Q ss_pred eEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEE--EEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 155 PLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVR--QITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 155 ~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~--~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+.+.++.++|++. .+|+++++|++|+++ ..+.|.. +.+++.+.|+.++
T Consensus 521 ----~~~~~l~~~~~v~------g~Pt~~~~~~~G~~i~~~r~~G~~----~~~~f~~~L~~~~ 570 (571)
T PRK00293 521 ----AEDVALLKHYNVL------GLPTILFFDAQGQEIPDARVTGFM----DAAAFAAHLRQLQ 570 (571)
T ss_pred ----hhhHHHHHHcCCC------CCCEEEEECCCCCCcccccccCCC----CHHHHHHHHHHhc
Confidence 1235778889998 899999999999985 3443433 3677777777654
|
|
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-07 Score=71.30 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=53.0
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc-C-cEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI-G-AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~-~-~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
+++++|.|| ++||++|+...|.+.++.+++++. + +.+..|+.+. +
T Consensus 19 ~~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~--------------------------------~ 65 (114)
T cd02992 19 PSAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCAD--------------------------------E 65 (114)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccc--------------------------------h
Confidence 479999999 999999999999999999998742 2 5555554432 1
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCC
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREG 189 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G 189 (247)
....+.+.|++. .+|+++++.++.
T Consensus 66 ~~~~~~~~~~i~------~~Pt~~lf~~~~ 89 (114)
T cd02992 66 ENVALCRDFGVT------GYPTLRYFPPFS 89 (114)
T ss_pred hhHHHHHhCCCC------CCCEEEEECCCC
Confidence 124677889998 889999996544
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=87.06 Aligned_cols=93 Identities=14% Similarity=0.228 Sum_probs=70.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+++++||.|| ++||++|+...|.+.++.++|+..++.|+.|+.|.. .
T Consensus 370 ~~k~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~--------------------------------~ 416 (463)
T TIGR00424 370 RKEAWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD--------------------------------Q 416 (463)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC--------------------------------c
Confidence 5789999999 999999999999999999999876788888888741 0
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
.....+.|++. .+|+++++.+++. ..+.+ .+..++.+.++..|+++
T Consensus 417 ~~~~~~~~~I~------~~PTii~Fk~g~~-~~~~Y--~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 417 KEFAKQELQLG------SFPTILFFPKHSS-RPIKY--PSEKRDVDSLMSFVNLL 462 (463)
T ss_pred cHHHHHHcCCC------ccceEEEEECCCC-CceeC--CCCCCCHHHHHHHHHhh
Confidence 11233678888 8899999965432 21111 11357789999999876
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-07 Score=78.60 Aligned_cols=98 Identities=21% Similarity=0.321 Sum_probs=73.1
Q ss_pred EcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCccee
Q psy15453 76 KLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIP 155 (247)
Q Consensus 76 ~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (247)
.+.++.+++.+++|+ .+.|++|..+.|.|+.+.++| |+.|+.||.|... + ..|+
T Consensus 114 ~l~~la~~~gL~~F~-~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~--------------------~--~~fp 167 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFY-RSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRP--------------------I--PSFP 167 (215)
T ss_pred HHHHHhhCeEEEEEE-cCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCC--------------------C--cCCC
Confidence 345667889999999 889999999999999999998 8999999999611 1 1222
Q ss_pred EEecCCchHHHHhCCcccCCCccceeEEEEcCCC-cEEEEEecCCCCCCCHHHHHH
Q psy15453 156 LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREG-IVRQITLNDLPVGRSVEETLR 210 (247)
Q Consensus 156 ~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G-~v~~~~~~~~~~~~~~~~il~ 210 (247)
-.. .+..+.+.||+. .+|++|||++++ ++.-+..|..+ .+++++
T Consensus 168 ~~~-~~~g~~~~l~v~------~~Pal~Lv~~~~~~~~pv~~G~~s----~~~L~~ 212 (215)
T PF13728_consen 168 NPR-PDPGQAKRLGVK------VTPALFLVNPNTKKWYPVSQGFMS----LDELED 212 (215)
T ss_pred CCC-CCHHHHHHcCCC------cCCEEEEEECCCCeEEEEeeecCC----HHHHHH
Confidence 221 256788899998 899999999998 44444455544 455544
|
|
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-07 Score=68.39 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=36.4
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh-cCcEEEEEeCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK-IGAEVVGVSVD 125 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~-~~~~vl~Vs~d 125 (247)
+++++|.|| ++||++|+...|.+.++.+.++. ..+.+..|+.+
T Consensus 18 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 18 DKDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 589999999 99999999999999999999875 34666666654
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-07 Score=86.34 Aligned_cols=90 Identities=10% Similarity=0.192 Sum_probs=67.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcC--cEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG--AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~--~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
++++++|.|| +.||++|++..|.+.++.+.+++.+ +.+..|..+
T Consensus 48 ~~~~~lv~f~-a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~--------------------------------- 93 (477)
T PTZ00102 48 ENEIVLVKFY-APWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT--------------------------------- 93 (477)
T ss_pred cCCcEEEEEE-CCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC---------------------------------
Confidence 4778999999 9999999999999999998887543 445444433
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
.+..+.++|++. .+|+.++++.++.+ .+.|. .+.+++++.++....
T Consensus 94 -~~~~l~~~~~i~------~~Pt~~~~~~g~~~--~y~g~----~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 94 -EEMELAQEFGVR------GYPTIKFFNKGNPV--NYSGG----RTADGIVSWIKKLTG 139 (477)
T ss_pred -CCHHHHHhcCCC------cccEEEEEECCceE--EecCC----CCHHHHHHHHHHhhC
Confidence 235788899998 89999999765544 44343 346788888877643
|
|
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.6e-07 Score=73.63 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=59.7
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
++++||.|| ++||++|+...|.|.++..+|. ++.|+-|+.+. .
T Consensus 83 ~~~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~----------------------------------~ 125 (175)
T cd02987 83 DTTVVVHIY-EPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASA----------------------------------T 125 (175)
T ss_pred CcEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccc----------------------------------h
Confidence 358999999 9999999999999999999985 68888887753 1
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
.+...|++. .+|+++++ ++|+++....|..
T Consensus 126 -~l~~~f~v~------~vPTllly-k~G~~v~~~vG~~ 155 (175)
T cd02987 126 -GASDEFDTD------ALPALLVY-KGGELIGNFVRVT 155 (175)
T ss_pred -hhHHhCCCC------CCCEEEEE-ECCEEEEEEechH
Confidence 456778888 88988888 6899998776544
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.9e-07 Score=62.08 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=58.2
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++++|.|| +.||+.|....+.++++.++ ..++.++.|+.+. .
T Consensus 10 ~~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~----------------------------------~ 52 (93)
T cd02947 10 AKPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE----------------------------------N 52 (93)
T ss_pred CCcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC----------------------------------C
Confidence 378899999 99999999999999999887 3478888887653 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
..+.+.|++. .+|++++++ +|+++..+.|..
T Consensus 53 ~~~~~~~~v~------~~P~~~~~~-~g~~~~~~~g~~ 83 (93)
T cd02947 53 PELAEEYGVR------SIPTFLFFK-NGKEVDRVVGAD 83 (93)
T ss_pred hhHHHhcCcc------cccEEEEEE-CCEEEEEEecCC
Confidence 3566778887 889998885 677777765543
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.5e-07 Score=78.60 Aligned_cols=102 Identities=16% Similarity=0.300 Sum_probs=75.3
Q ss_pred cCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeE
Q psy15453 77 LTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPL 156 (247)
Q Consensus 77 l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (247)
+.++..++.+++|+ .+.||+|....|.|+.+.++| |+.+++||.|... + ..||-
T Consensus 145 i~~la~~~gL~fFy-~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~--------------------~--p~fp~ 198 (256)
T TIGR02739 145 IQQLSQSYGLFFFY-RGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTL--------------------I--PGLPN 198 (256)
T ss_pred HHHHHhceeEEEEE-CCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC--------------------C--CCCCC
Confidence 34556789999999 899999999999999999998 8999999999711 1 12332
Q ss_pred EecCCchHHHHhCCcccCCCccceeEEEEcCC-CcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 157 LSDLTHEISRDYGVYLEDKGHSLRGLFIIDRE-GIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 157 l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~-G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
.. .+...++.+|+. .+|++|+|+++ +++.-+..|..+ .+++.+.+..+
T Consensus 199 ~~-~d~gqa~~l~v~------~~Pal~Lv~~~t~~~~pv~~G~iS----~deL~~Ri~~v 247 (256)
T TIGR02739 199 SR-SDSGQAQHLGVK------YFPALYLVNPKSQKMSPLAYGFIS----QDELKERILNV 247 (256)
T ss_pred cc-CChHHHHhcCCc------cCceEEEEECCCCcEEEEeeccCC----HHHHHHHHHHH
Confidence 22 246678899998 89999999999 555555456555 45555555443
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.9e-07 Score=85.13 Aligned_cols=91 Identities=11% Similarity=0.111 Sum_probs=68.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc-CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI-GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~-~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
.||+++|.|| ++||++|+...|.+.++.+++++. .+.+..|+.+.
T Consensus 374 ~~k~vlv~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~--------------------------------- 419 (477)
T PTZ00102 374 SDKDVLLEIY-APWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA--------------------------------- 419 (477)
T ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC---------------------------------
Confidence 4889999999 999999999999999999998753 35555555432
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+....+.|++. .+|+++++++++++...+.|. .+.+++.+.|+...
T Consensus 420 -~~~~~~~~~v~------~~Pt~~~~~~~~~~~~~~~G~----~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 420 -NETPLEEFSWS------AFPTILFVKAGERTPIPYEGE----RTVEGFKEFVNKHA 465 (477)
T ss_pred -CccchhcCCCc------ccCeEEEEECCCcceeEecCc----CCHHHHHHHHHHcC
Confidence 12345677777 889999999888775455443 34688888887765
|
|
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-06 Score=60.90 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=55.8
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchH
Q psy15453 85 LVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI 164 (247)
Q Consensus 85 vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~ 164 (247)
.|..|| ++||++|+...+.+.++.++++. .+.++-|+.+. +.++
T Consensus 2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~----------------------------------~~~~ 45 (82)
T TIGR00411 2 KIELFT-SPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVME----------------------------------NPQK 45 (82)
T ss_pred EEEEEE-CCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCcc----------------------------------CHHH
Confidence 467888 99999999999999999998863 47777776642 1245
Q ss_pred HHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 165 SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 165 ~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
.+.||+. .+|++++ +|+++ +.|.. +.+++.+.|+.
T Consensus 46 ~~~~~v~------~vPt~~~---~g~~~--~~G~~----~~~~l~~~l~~ 80 (82)
T TIGR00411 46 AMEYGIM------AVPAIVI---NGDVE--FIGAP----TKEELVEAIKK 80 (82)
T ss_pred HHHcCCc------cCCEEEE---CCEEE--EecCC----CHHHHHHHHHh
Confidence 6779988 8898875 56643 22322 24566666554
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.1e-07 Score=81.81 Aligned_cols=92 Identities=14% Similarity=0.247 Sum_probs=69.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
++|++||.|| ++||++|+...|.+.++.++|+..++.|+.|+.|..
T Consensus 364 ~~k~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~--------------------------------- 409 (457)
T PLN02309 364 RKEPWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD--------------------------------- 409 (457)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc---------------------------------
Confidence 5789999999 999999999999999999999876788888887730
Q ss_pred CchHHH-HhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISR-DYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~-~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+ .|++. .+|+++++.++..-...+ .+..++.+.++..|+++
T Consensus 410 ~~~la~~~~~I~------~~PTil~f~~g~~~~v~Y---~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 410 QKEFAKQELQLG------SFPTILLFPKNSSRPIKY---PSEKRDVDSLLSFVNSL 456 (457)
T ss_pred chHHHHhhCCCc------eeeEEEEEeCCCCCeeec---CCCCcCHHHHHHHHHHh
Confidence 123343 58888 889999996544321111 12356789999999876
|
|
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.2e-07 Score=76.22 Aligned_cols=102 Identities=19% Similarity=0.287 Sum_probs=75.3
Q ss_pred cCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeE
Q psy15453 77 LTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPL 156 (247)
Q Consensus 77 l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (247)
+.++.+++.|++|+ .+.||+|..+.|.|+.+.++| |+.|++||.|... ...||-
T Consensus 138 i~~la~~~GL~fFy-~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~----------------------~p~fp~ 191 (248)
T PRK13703 138 IAKLAEHYGLMFFY-RGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVI----------------------NPLLPD 191 (248)
T ss_pred HHHHHhcceEEEEE-CCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC----------------------CCCCCC
Confidence 34556789999999 899999999999999999998 8999999999611 112332
Q ss_pred EecCCchHHHHhCCcccCCCccceeEEEEcCCC-cEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 157 LSDLTHEISRDYGVYLEDKGHSLRGLFIIDREG-IVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 157 l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G-~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
.. .+...++.+|+. .+|++|||+++. ++.-+..|..+ .+++.+.+..+
T Consensus 192 ~~-~d~gqa~~l~v~------~~PAl~Lv~~~t~~~~pv~~G~iS----~deL~~Ri~~v 240 (248)
T PRK13703 192 SR-TDQGQAQRLGVK------YFPALMLVDPKSGSVRPLSYGFIT----QDDLAKRFLNV 240 (248)
T ss_pred Cc-cChhHHHhcCCc------ccceEEEEECCCCcEEEEeeccCC----HHHHHHHHHHH
Confidence 21 234555889998 889999999996 66655556655 45666555544
|
|
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.2e-06 Score=70.13 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=58.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
++++||.|| ++||++|+...|.|.+++.+|. .+.|+-|+.+.
T Consensus 102 ~~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~----------------------------------- 143 (192)
T cd02988 102 DTWVVVHLY-KDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQ----------------------------------- 143 (192)
T ss_pred CCEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHH-----------------------------------
Confidence 458999999 9999999999999999999985 68888876642
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
....|++. .+|+++++ ++|+++...+|..+
T Consensus 144 --~~~~~~i~------~lPTlliy-k~G~~v~~ivG~~~ 173 (192)
T cd02988 144 --CIPNYPDK------NLPTILVY-RNGDIVKQFIGLLE 173 (192)
T ss_pred --hHhhCCCC------CCCEEEEE-ECCEEEEEEeCchh
Confidence 02567777 88988888 79999988877554
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=98.37 E-value=3e-06 Score=77.74 Aligned_cols=90 Identities=17% Similarity=0.284 Sum_probs=67.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcC--cEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG--AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~--~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
++++++|.|| ++||++|+...|.+.++++.+++.+ +.++.|..+.
T Consensus 17 ~~~~~~v~f~-a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------------------------------- 63 (462)
T TIGR01130 17 SHEFVLVEFY-APWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-------------------------------- 63 (462)
T ss_pred cCCCEEEEEE-CCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC--------------------------------
Confidence 4678999999 9999999999999999999988655 6666665542
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcE-EEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIV-RQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v-~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
...+.+.|++. .+|+++++ ++|+. ...+.|.. +.+++.+.++...
T Consensus 64 --~~~l~~~~~i~------~~Pt~~~~-~~g~~~~~~~~g~~----~~~~l~~~i~~~~ 109 (462)
T TIGR01130 64 --EKDLAQKYGVS------GYPTLKIF-RNGEDSVSDYNGPR----DADGIVKYMKKQS 109 (462)
T ss_pred --cHHHHHhCCCc------cccEEEEE-eCCccceeEecCCC----CHHHHHHHHHHhc
Confidence 24678889998 88988888 46665 44444533 3566677665554
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.4e-06 Score=59.22 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=27.5
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEE
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVG 121 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~ 121 (247)
.|.|| ++|||+|+...|.+.++.+++.. .+.++-
T Consensus 2 ~i~~~-a~~C~~C~~~~~~~~~~~~e~~~-~~~~~~ 35 (76)
T TIGR00412 2 KIQIY-GTGCANCQMTEKNVKKAVEELGI-DAEFEK 35 (76)
T ss_pred EEEEE-CCCCcCHHHHHHHHHHHHHHcCC-CeEEEE
Confidence 47899 99999999999999999998852 244433
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.8e-06 Score=60.70 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=63.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
++|+++|+|. +.||++|....... .++.+.+.+ ++.++.++.+.++
T Consensus 16 ~~K~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e----------------------------- 64 (114)
T cd02958 16 EKKWLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSE----------------------------- 64 (114)
T ss_pred hCceEEEEEe-cCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCcc-----------------------------
Confidence 5899999999 99999999875543 233444433 4555555443311
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcC-CCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDR-EGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~-~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
...+...|++. ..|++++||+ +|++++...|..+ .++++..|+..
T Consensus 65 ---~~~~~~~~~~~------~~P~~~~i~~~~g~~l~~~~G~~~----~~~f~~~L~~~ 110 (114)
T cd02958 65 ---GQRFLQSYKVD------KYPHIAIIDPRTGEVLKVWSGNIT----PEDLLSQLIEF 110 (114)
T ss_pred ---HHHHHHHhCcc------CCCeEEEEeCccCcEeEEEcCCCC----HHHHHHHHHHH
Confidence 13566778887 8899999999 8999998866654 46777776654
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=98.33 E-value=6e-06 Score=68.68 Aligned_cols=77 Identities=16% Similarity=0.097 Sum_probs=57.9
Q ss_pred CCCCeEEEEEEeC---CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeE
Q psy15453 80 YRGKYLVFFFYPL---DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPL 156 (247)
Q Consensus 80 ~~gk~vvl~F~~a---~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (247)
+++...++.|. + +||++|+...|.+.++.+++. ++++..+..|.
T Consensus 17 ~~~~~~i~~f~-~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~------------------------------ 63 (215)
T TIGR02187 17 LKNPVEIVVFT-DNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDT------------------------------ 63 (215)
T ss_pred cCCCeEEEEEc-CCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCC------------------------------
Confidence 34555667787 7 999999999999999999884 56666666664
Q ss_pred EecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEE-EEecC
Q psy15453 157 LSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQ-ITLND 198 (247)
Q Consensus 157 l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~-~~~~~ 198 (247)
|.+..+++.|++. .+|++++++ +|+.+. .+.|.
T Consensus 64 --~~~~~l~~~~~V~------~~Pt~~~f~-~g~~~~~~~~G~ 97 (215)
T TIGR02187 64 --PEDKEEAEKYGVE------RVPTTIILE-EGKDGGIRYTGI 97 (215)
T ss_pred --cccHHHHHHcCCC------ccCEEEEEe-CCeeeEEEEeec
Confidence 1246889999999 899998886 566653 55453
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.8e-06 Score=67.68 Aligned_cols=63 Identities=10% Similarity=-0.022 Sum_probs=51.7
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCc
Q psy15453 83 KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTH 162 (247)
Q Consensus 83 k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~ 162 (247)
..+|++|| |+|||+|+...+.|.++.++|. ++.|+-|+.|
T Consensus 18 g~~vl~f~-a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d------------------------------------- 57 (204)
T PTZ00062 18 GKLVLYVK-SSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA------------------------------------- 57 (204)
T ss_pred CcEEEEEe-CCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc-------------------------------------
Confidence 45789999 9999999999999999999986 5777766321
Q ss_pred hHHHHhCCcccCCCccceeEEEEcCCCcEEEEEec
Q psy15453 163 EISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLN 197 (247)
Q Consensus 163 ~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~ 197 (247)
|++. .+|+++++ ++|+++....|
T Consensus 58 -----~~V~------~vPtfv~~-~~g~~i~r~~G 80 (204)
T PTZ00062 58 -----DANN------EYGVFEFY-QNSQLINSLEG 80 (204)
T ss_pred -----cCcc------cceEEEEE-ECCEEEeeeeC
Confidence 7777 88998888 58999888754
|
|
| >PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ | Back alignment and domain information |
|---|
Probab=98.24 E-value=3e-05 Score=60.53 Aligned_cols=142 Identities=13% Similarity=0.186 Sum_probs=86.8
Q ss_pred ccCCCCCCceeee----eecC---CceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHH-HHhcCcEEEEE-eC
Q psy15453 54 VVMKPAPYWKGTA----VVDG---NIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDE-FHKIGAEVVGV-SV 124 (247)
Q Consensus 54 ~~G~~~P~f~l~~----~~d~---~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~-~~~~~~~vl~V-s~ 124 (247)
..|+++|...+.+ +.++ ..+..+..++.||+-||.-. |--...=..-.|-+..+.+. |....++..+| +.
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~i-AGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~ 80 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHI-AGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINL 80 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEe-ccCCchhHhhHHHHHHHHHcCCCccceeEEEEEec
Confidence 4577777777522 0111 23455667788998777777 44333323333434444333 44445776666 45
Q ss_pred CC-----hHhHHHHHHHhhccccccccCCCCCccee-EEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecC
Q psy15453 125 DS-----HFTHRAWINSLKKDNSLKKDNRLDKLKIP-LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLND 198 (247)
Q Consensus 125 d~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~ 198 (247)
|. ..-.+..+++.++ .++|. ++.|.++.+.+.|++..+ .-+.+|+|++|+|+++..|.
T Consensus 81 dDAi~gt~~fVrss~e~~kk-----------~~p~s~~vlD~~G~~~~aW~L~~~-----~SaiiVlDK~G~V~F~k~G~ 144 (160)
T PF09695_consen 81 DDAIWGTGGFVRSSAEDSKK-----------EFPWSQFVLDSNGVVRKAWQLQEE-----SSAIIVLDKQGKVQFVKEGA 144 (160)
T ss_pred ccccccchHHHHHHHHHhhh-----------hCCCcEEEEcCCCceeccccCCCC-----CceEEEEcCCccEEEEECCC
Confidence 43 1223333443332 45675 678999999999999843 35688999999999999887
Q ss_pred CCCCCCHHHHHHHHH
Q psy15453 199 LPVGRSVEETLRLVR 213 (247)
Q Consensus 199 ~~~~~~~~~il~~l~ 213 (247)
++.. ++++++..|+
T Consensus 145 Ls~~-Ev~qVi~Ll~ 158 (160)
T PF09695_consen 145 LSPA-EVQQVIALLK 158 (160)
T ss_pred CCHH-HHHHHHHHHh
Confidence 7633 4677766665
|
|
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.5e-05 Score=60.80 Aligned_cols=92 Identities=12% Similarity=0.071 Sum_probs=55.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHH--HHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALN--EKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~--~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
.||+++|+|. +.||++|+..-...- .-..++-++++.+|-+..|..+ . +..
T Consensus 22 ~~Kpvmv~f~-sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td----------~-----------~~~----- 74 (130)
T cd02960 22 SNKPLMVIHH-LEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTD----------K-----------NLS----- 74 (130)
T ss_pred CCCeEEEEEe-CCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCC----------C-----------CcC-----
Confidence 5899999999 999999998877642 2222322234433333333210 0 010
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCC------CCCHHHHHHHHHh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPV------GRSVEETLRLVRA 214 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~------~~~~~~il~~l~~ 214 (247)
+ .| . .+|+++++|++|+++....|..+. ..+++.+++..+.
T Consensus 75 -~-------~g-~------~vPtivFld~~g~vi~~i~Gy~~~~~~~y~~~~~~~~~~~m~~ 121 (130)
T cd02960 75 -P-------DG-Q------YVPRIMFVDPSLTVRADITGRYSNRLYTYEPADIPLLIENMKK 121 (130)
T ss_pred -c-------cC-c------ccCeEEEECCCCCCcccccccccCccceeCcCcHHHHHHHHHH
Confidence 0 11 2 679999999999999887655432 3445566555443
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00012 Score=59.98 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=85.6
Q ss_pred CceeeeeecCCceeEEcCCC-CCCeEE--EEEEe----CCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHH
Q psy15453 61 YWKGTAVVDGNIKEIKLTDY-RGKYLV--FFFYP----LDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAW 133 (247)
Q Consensus 61 ~f~l~~~~d~~G~~v~l~~~-~gk~vv--l~F~~----a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~ 133 (247)
++.+ ...+| +++|.++ .||-.| ..|.+ ...|+.|...+..++-....+..+++.+++||..+.+.+.+|
T Consensus 48 ~Y~F---~g~~G-~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~af 123 (211)
T PF05988_consen 48 DYVF---DGPDG-PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAF 123 (211)
T ss_pred CeEE---eCCCC-cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHH
Confidence 4554 23344 4999986 677333 33321 478999999999998888888888999999999999999998
Q ss_pred HHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC-CccceeEEEEcCCCcEEEEE
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK-GHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~-g~~~p~~~lId~~G~v~~~~ 195 (247)
.+. . |++||.++..+..+...|++...+. ...--+.|+-|. |+|-..+
T Consensus 124 k~r----------m---GW~~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg-~~VfhTy 172 (211)
T PF05988_consen 124 KRR----------M---GWTFPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDG-GRVFHTY 172 (211)
T ss_pred HHh----------c---CCCceEEEcCCCcccccccceeccCCCceeEEEEEEcC-CEEEEEe
Confidence 884 3 5679999988888999999854332 122225566654 7888776
|
|
| >PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma [] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.5e-05 Score=64.72 Aligned_cols=119 Identities=15% Similarity=0.196 Sum_probs=85.6
Q ss_pred CCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcC---cEEEEEeCCChHhHHHH
Q psy15453 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG---AEVVGVSVDSHFTHRAW 133 (247)
Q Consensus 57 ~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~---~~vl~Vs~d~~~~~~~~ 133 (247)
.+.|.+++ .| .-.+.+.+|+++||.+. -.+|..|..++.+|..|..++.+.| |.++.|+.-...+...+
T Consensus 8 ~~~p~W~i------~~-~~pm~~~~G~VtvVALL-~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~ 79 (238)
T PF04592_consen 8 KPPPPWKI------GG-QDPMLNSLGHVTVVALL-QASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKY 79 (238)
T ss_pred CCCCCceE------CC-chHhhhcCCcEEeeeeh-hhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHH
Confidence 56788885 22 34466778999999999 7799999999999999999998664 67888887554333322
Q ss_pred HHHhhccccccccCCCCCcceeEEe-c-CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIPLLS-D-LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~-D-~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
..-..+ ....++++. | .+.+++..++..-. -++|+|+-|++.+...-+.+
T Consensus 80 ~~l~~r----------~~~~ipVyqq~~~q~dvW~~L~G~kd-------D~~iyDRCGrL~~~i~~P~S 131 (238)
T PF04592_consen 80 WELKRR----------VSEHIPVYQQDENQPDVWELLNGSKD-------DFLIYDRCGRLTYHIPLPYS 131 (238)
T ss_pred HHHHHh----------CCCCCceecCCccccCHHHHhCCCcC-------cEEEEeccCcEEEEecCcHH
Confidence 111111 034588886 3 34789999988633 59999999999998744433
|
It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding |
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.7e-05 Score=53.16 Aligned_cols=38 Identities=16% Similarity=0.053 Sum_probs=29.7
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 85 LVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 85 vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
.|..|+ ++|||+|+...+.|+++..++. ++.+.-|+.+
T Consensus 2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~ 39 (67)
T cd02973 2 NIEVFV-SPTCPYCPDAVQAANRIAALNP--NISAEMIDAA 39 (67)
T ss_pred EEEEEE-CCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcc
Confidence 467788 9999999999999998876542 5777776654
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.4e-05 Score=58.37 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccC----------
Q psy15453 105 LNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLED---------- 174 (247)
Q Consensus 105 l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~---------- 174 (247)
|.+..+++++.|+.+|+|+..+.+..++|.+.. +++++++.|+++.+.+.+|+....
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~-------------~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~ 68 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELT-------------GFPFPLYVDPERKLYKALGLKRGLKWSLLPPALW 68 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhcc-------------CCCCcEEEeCcHHHHHHhCCccccccCCCchHHH
Confidence 567788888899999999999987799988742 689999999999999999886411
Q ss_pred ----------------------CCccceeEEEEcCCCcEEEEEe
Q psy15453 175 ----------------------KGHSLRGLFIIDREGIVRQITL 196 (247)
Q Consensus 175 ----------------------~g~~~p~~~lId~~G~v~~~~~ 196 (247)
++.....+||+|++|+|++.|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr 112 (115)
T PF13911_consen 69 SGLSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR 112 (115)
T ss_pred HHHHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence 0123456899999999999884
|
|
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.4e-05 Score=55.89 Aligned_cols=70 Identities=17% Similarity=0.121 Sum_probs=53.4
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 79 DYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 79 ~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
++++.+.+..|+ +.||++|+...+.++++..++. ++.+..+..+.
T Consensus 9 ~l~~pv~i~~F~-~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~-------------------------------- 53 (89)
T cd03026 9 RLNGPINFETYV-SLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGAL-------------------------------- 53 (89)
T ss_pred hcCCCEEEEEEE-CCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHh--------------------------------
Confidence 456666777777 9999999999999999987764 57776665542
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEE
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQI 194 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~ 194 (247)
..++++.||+. .+|++++ +|+++..
T Consensus 54 --~~e~a~~~~V~------~vPt~vi---dG~~~~~ 78 (89)
T cd03026 54 --FQDEVEERGIM------SVPAIFL---NGELFGF 78 (89)
T ss_pred --CHHHHHHcCCc------cCCEEEE---CCEEEEe
Confidence 14677899999 8998864 6887764
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >KOG0908|consensus | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.9e-05 Score=64.79 Aligned_cols=71 Identities=20% Similarity=0.322 Sum_probs=57.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
-+|.+++.|. |+||++|++-.|.+..+..+|. +..|+-|.+|.
T Consensus 20 g~k~v~Vdft-a~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~---------------------------------- 62 (288)
T KOG0908|consen 20 GGKLVVVDFT-ASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDE---------------------------------- 62 (288)
T ss_pred CceEEEEEEE-ecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHH----------------------------------
Confidence 4689999999 9999999999999999999996 78999888764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
-+..+..+|+. .+|++++. ++|+=+...
T Consensus 63 c~~taa~~gV~------amPTFiff-~ng~kid~~ 90 (288)
T KOG0908|consen 63 CRGTAATNGVN------AMPTFIFF-RNGVKIDQI 90 (288)
T ss_pred hhchhhhcCcc------cCceEEEE-ecCeEeeee
Confidence 13455678888 88988877 566555554
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.9e-05 Score=71.24 Aligned_cols=90 Identities=9% Similarity=0.162 Sum_probs=65.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc--CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI--GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
.++.++|.|| ++||++|+...|.+.++.+.++.. ++.+..|+.+..
T Consensus 363 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n------------------------------- 410 (462)
T TIGR01130 363 ETKDVLVEFY-APWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN------------------------------- 410 (462)
T ss_pred CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC-------------------------------
Confidence 3789999999 999999999999999999999852 577777766531
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEE-EEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVR-QITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~-~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
.+.. |++. .+|+++++.+++++. ..+.| ..+.+.+++.|+....
T Consensus 411 ----~~~~-~~i~------~~Pt~~~~~~~~~~~~~~~~g----~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 411 ----DVPP-FEVE------GFPTIKFVPAGKKSEPVPYDG----DRTLEDFSKFIAKHAT 455 (462)
T ss_pred ----ccCC-CCcc------ccCEEEEEeCCCCcCceEecC----cCCHHHHHHHHHhcCC
Confidence 0111 6666 789999997766531 22223 3447888888876543
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.6e-05 Score=55.85 Aligned_cols=91 Identities=21% Similarity=0.166 Sum_probs=62.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.|+++++.|+ +.||++|....+.+.++.++|+. .+.++.|+.|.
T Consensus 11 ~~~~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~---------------------------------- 54 (103)
T cd02982 11 SGKPLLVLFY-NKDDSESEELRERFKEVAKKFKG-KLLFVVVDADD---------------------------------- 54 (103)
T ss_pred cCCCEEEEEE-cCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHh----------------------------------
Confidence 3789999999 99999999999999999999984 47777776653
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCC-CcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDRE-GIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~-G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
...+.+.||+... ..|++++++.+ |+.... .......+++.+.|+.+
T Consensus 55 ~~~~~~~~~i~~~----~~P~~~~~~~~~~~k~~~----~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 55 FGRHLEYFGLKEE----DLPVIAIINLSDGKKYLM----PEEELTAESLEEFVEDF 102 (103)
T ss_pred hHHHHHHcCCChh----hCCEEEEEecccccccCC----CccccCHHHHHHHHHhh
Confidence 1245566666532 57888888763 432211 11112456666666543
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.2e-05 Score=48.94 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=33.8
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
++.|| +.||+.|....+.+.++ ++...++.++.++.+...
T Consensus 1 l~~~~-~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 40 (69)
T cd01659 1 LVLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDP 40 (69)
T ss_pred CEEEE-CCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCCh
Confidence 47888 99999999999999998 455568999999988643
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.9e-05 Score=51.03 Aligned_cols=72 Identities=18% Similarity=0.140 Sum_probs=46.8
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEIS 165 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 165 (247)
++.|+ ++||++|+...|.|.++. +.++-|+. |...++.
T Consensus 2 iv~f~-a~wC~~Ck~~~~~l~~~~-------~~~~~vd~----------------------------------~~~~~l~ 39 (75)
T PHA02125 2 IYLFG-AEWCANCKMVKPMLANVE-------YTYVDVDT----------------------------------DEGVELT 39 (75)
T ss_pred EEEEE-CCCCHhHHHHHHHHHHHh-------heEEeeeC----------------------------------CCCHHHH
Confidence 67888 999999999989876431 22322222 2346788
Q ss_pred HHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 166 RDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 166 ~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
+.|++. .+|+++ +|+.+....|. .++..++.+.|
T Consensus 40 ~~~~v~------~~PT~~----~g~~~~~~~G~---~~~~~~l~~~~ 73 (75)
T PHA02125 40 AKHHIR------SLPTLV----NTSTLDRFTGV---PRNVAELKEKL 73 (75)
T ss_pred HHcCCc------eeCeEE----CCEEEEEEeCC---CCcHHHHHHHh
Confidence 999999 889765 56666555443 33455555543
|
|
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.9e-05 Score=60.45 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=45.8
Q ss_pred CCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 78 TDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 78 ~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
..+..+..++.|. .+|||.|...+|.|.++.+... ++.+=.|..|.. .+..
T Consensus 37 ~~~~~~~~ilvi~-e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~---~el~----------------------- 87 (129)
T PF14595_consen 37 KSIQKPYNILVIT-ETWCGDCARNVPVLAKIAEANP--NIEVRIILRDEN---KELM----------------------- 87 (129)
T ss_dssp HT--S-EEEEEE---TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHH---HHHT-----------------------
T ss_pred HhcCCCcEEEEEE-CCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCC---hhHH-----------------------
Confidence 3445668889999 9999999999999999998865 566655555431 1111
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
++.+. .|.. .+|+++++|.+|+.+..+
T Consensus 88 ---~~~lt--~g~~------~IP~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 88 ---DQYLT--NGGR------SIPTFIFLDKDGKELGRW 114 (129)
T ss_dssp ---TTTTT---SS--------SSEEEEE-TT--EEEEE
T ss_pred ---HHHHh--CCCe------ecCEEEEEcCCCCEeEEE
Confidence 11111 3444 899999999999999887
|
|
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.9e-05 Score=55.40 Aligned_cols=48 Identities=31% Similarity=0.508 Sum_probs=40.9
Q ss_pred EcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 76 KLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 76 ~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
....++++++++.|| +.||++|+..+|.+.++.+++.. .+.++.|...
T Consensus 26 ~~~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 26 SLSELKGKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred ehhhcCCceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 334445889999999 99999999999999999999975 6888888875
|
|
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00016 Score=54.74 Aligned_cols=92 Identities=13% Similarity=0.006 Sum_probs=58.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.+|.++|+|+ +.||+.|....... .++.+-+ ++++.++.++.+.++
T Consensus 26 ~~K~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~e----------------------------- 74 (122)
T smart00594 26 QRRLLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTSE----------------------------- 74 (122)
T ss_pred hcCCEEEEEe-CCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCChh-----------------------------
Confidence 5899999999 99999999876653 2233333 335555555544321
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCC-cEEEEEecCCCCCCCHHHHHHHH
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREG-IVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G-~v~~~~~~~~~~~~~~~~il~~l 212 (247)
...+...|++. ..|+..++|++| .......+...-..+.++++..|
T Consensus 75 ---g~~l~~~~~~~------~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 75 ---GQRVSQFYKLD------SFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ---HHHHHHhcCcC------CCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 24677788888 889999999997 11111122233333467777655
|
|
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00021 Score=59.39 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=51.8
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCch
Q psy15453 84 YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHE 163 (247)
Q Consensus 84 ~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~ 163 (247)
..++.|| ++||++|+...+.++++..++. .+.+.-|..+ ....
T Consensus 135 v~I~~F~-a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~----------------------------------~~~~ 177 (215)
T TIGR02187 135 VRIEVFV-TPTCPYCPYAVLMAHKFALAND--KILGEMIEAN----------------------------------ENPD 177 (215)
T ss_pred cEEEEEE-CCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCC----------------------------------CCHH
Confidence 4555588 9999999998888888776642 4555444433 2357
Q ss_pred HHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy15453 164 ISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVR 213 (247)
Q Consensus 164 ~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~ 213 (247)
+.+.|++. .+|++++. .+|+. +.|..+ -+++.+.|+
T Consensus 178 ~~~~~~V~------~vPtl~i~-~~~~~---~~G~~~----~~~l~~~l~ 213 (215)
T TIGR02187 178 LAEKYGVM------SVPKIVIN-KGVEE---FVGAYP----EEQFLEYIL 213 (215)
T ss_pred HHHHhCCc------cCCEEEEe-cCCEE---EECCCC----HHHHHHHHH
Confidence 77889999 89987775 56653 334322 355555554
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0003 Score=59.86 Aligned_cols=146 Identities=14% Similarity=0.239 Sum_probs=87.0
Q ss_pred CCCCCCceeeeeecCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHH-hc--CcEEEEEeCCChHhHH
Q psy15453 56 MKPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH-KI--GAEVVGVSVDSHFTHR 131 (247)
Q Consensus 56 G~~~P~f~l~~~~d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~-~~--~~~vl~Vs~d~~~~~~ 131 (247)
.-.+|+|...++ .|+.+++.+. +||+.||..+...|-..|....-. ...++|. .. .+++|-|+.-+.-- +
T Consensus 98 AlyFP~l~g~tL---~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e~~~-k 171 (252)
T PF05176_consen 98 ALYFPNLQGKTL---AGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLIENWL-K 171 (252)
T ss_pred CCcCCCCccccC---CCCCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecchHHH-H
Confidence 467999999776 7788888765 799988888756665555554333 2333443 33 68999998865322 2
Q ss_pred HHHHHhhccccccccCCCC-CcceeEEecC--CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHH
Q psy15453 132 AWINSLKKDNSLKKDNRLD-KLKIPLLSDL--THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEET 208 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~--~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~i 208 (247)
.|+-..-. ..+-+..... ...|-+..+. ...+.+.+|+.+. .+-.+||||++|+|++...|... ..+++.+
T Consensus 172 ~~l~~~~~-~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~----~~GYvyLVD~~grIRWagsG~At-~~E~~~L 245 (252)
T PF05176_consen 172 SWLVKLFM-GSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNS----YVGYVYLVDPNGRIRWAGSGPAT-PEELESL 245 (252)
T ss_pred HHHHHHHh-hhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCC----CcCeEEEECCCCeEEeCccCCCC-HHHHHHH
Confidence 33222210 0000011110 1234333333 4588899999865 56779999999999999755443 3334555
Q ss_pred HHHHH
Q psy15453 209 LRLVR 213 (247)
Q Consensus 209 l~~l~ 213 (247)
.+.++
T Consensus 246 ~k~~~ 250 (252)
T PF05176_consen 246 WKCVK 250 (252)
T ss_pred HHHHh
Confidence 44444
|
A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane |
| >PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols [] | Back alignment and domain information |
|---|
Probab=97.71 E-value=1e-05 Score=48.70 Aligned_cols=25 Identities=48% Similarity=0.998 Sum_probs=21.7
Q ss_pred hhhcccccCCccCCCCcCCCccccC
Q psy15453 214 AFQYTDEHGEACPSGWQPGQRTISN 238 (247)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (247)
+||.++++++.||+||+||+++|++
T Consensus 1 ALQ~~d~~~v~tPanW~pGd~~ivp 25 (40)
T PF10417_consen 1 ALQFTDKHGVATPANWKPGDDVIVP 25 (40)
T ss_dssp HHHHHHHHSSBBCTTTCTTSGEBE-
T ss_pred CceehhhhCcccCcCCCCCCCeEcC
Confidence 4778889999999999999999943
|
The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C .... |
| >KOG4498|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00035 Score=55.94 Aligned_cols=132 Identities=15% Similarity=0.214 Sum_probs=93.2
Q ss_pred cCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccC
Q psy15453 69 DGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDN 147 (247)
Q Consensus 69 d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~ 147 (247)
+..|+.|...++ +.+..+|.|.+=..|-.|+.+...|.++.+-++..|+.+++|-..+....+.+.++-
T Consensus 36 ~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~---------- 105 (197)
T KOG4498|consen 36 DSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQT---------- 105 (197)
T ss_pred hhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhccc----------
Confidence 458889999988 455788999989999999999999999988888899999999775544444444421
Q ss_pred CCCCcceeEEecCCchHHHHhCCcc----------------------cC----CCccceeEEEEcCCCcEEEEEec-CCC
Q psy15453 148 RLDKLKIPLLSDLTHEISRDYGVYL----------------------ED----KGHSLRGLFIIDREGIVRQITLN-DLP 200 (247)
Q Consensus 148 ~~~~~~~~~l~D~~~~~~~~~~~~~----------------------~~----~g~~~p~~~lId~~G~v~~~~~~-~~~ 200 (247)
.+.-.++.|++..+.+.++... +. .+...-..++|.+.|+|.+.+.. +..
T Consensus 106 ---~f~gevylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~~g 182 (197)
T KOG4498|consen 106 ---YFSGEVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKETG 182 (197)
T ss_pred ---CcceeEEEcCccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEecCCCC
Confidence 2333667777655544443322 11 12234558899998899998853 334
Q ss_pred CCCCHHHHHHHHH
Q psy15453 201 VGRSVEETLRLVR 213 (247)
Q Consensus 201 ~~~~~~~il~~l~ 213 (247)
+..+++++++.+.
T Consensus 183 D~~~i~~Vl~v~~ 195 (197)
T KOG4498|consen 183 DHVPIDSVLQVVG 195 (197)
T ss_pred CCcCHHHHHHHhh
Confidence 6667888887664
|
|
| >KOG0190|consensus | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00023 Score=65.52 Aligned_cols=93 Identities=17% Similarity=0.233 Sum_probs=68.0
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
...+++-|| |.||++|++.+|.+.+..+.+++.+-.+--.-+|-. .+
T Consensus 42 ~~~vlVeFY-APWCghck~LaPey~kAA~~Lke~~s~i~LakVDat--------------------------------~~ 88 (493)
T KOG0190|consen 42 HEFVLVEFY-APWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT--------------------------------EE 88 (493)
T ss_pred CceEEEEEE-chhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc--------------------------------hh
Confidence 457889999 999999999999999999999876322222222221 22
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhcc
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYT 218 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 218 (247)
+.++.+|++. ..|++-+. ++|+....+.| .+..+.|+.+|+.-...
T Consensus 89 ~~~~~~y~v~------gyPTlkiF-rnG~~~~~Y~G----~r~adgIv~wl~kq~gP 134 (493)
T KOG0190|consen 89 SDLASKYEVR------GYPTLKIF-RNGRSAQDYNG----PREADGIVKWLKKQSGP 134 (493)
T ss_pred hhhHhhhcCC------CCCeEEEE-ecCCcceeccC----cccHHHHHHHHHhccCC
Confidence 6788999999 88987777 78987444323 45579999999776543
|
|
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00067 Score=47.37 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=35.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChH
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
.||+++|.|. +.||+.|+..-..+ .++.+.+. +++..+-|..+...
T Consensus 16 ~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~ 64 (82)
T PF13899_consen 16 EGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDED 64 (82)
T ss_dssp HTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHH
T ss_pred cCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCC
Confidence 4899999999 99999999987776 33444344 47888888886644
|
... |
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0096 Score=46.51 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=62.4
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeE
Q psy15453 80 YRGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPL 156 (247)
Q Consensus 80 ~~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (247)
..+|+.++.|- ...|++|...=..+ .++++-+.+ ++.++.+.........- .. +.. .
T Consensus 40 ~~~Kylllmfe-s~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f-------------~~---g~k--e 99 (182)
T COG2143 40 PNDKYLLLMFE-SNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLF-------------KV---GDK--E 99 (182)
T ss_pred ccCcEEEEEEc-CCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceEe-------------ec---Cce--e
Confidence 35899999999 99999998664433 445555543 67777776543111100 00 111 0
Q ss_pred EecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 157 LSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 157 l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
..-...++++.|++. .+|++++.|++|+-+....|-.+
T Consensus 100 e~~s~~ELa~kf~vr------stPtfvFfdk~Gk~Il~lPGY~p 137 (182)
T COG2143 100 EKMSTEELAQKFAVR------STPTFVFFDKTGKTILELPGYMP 137 (182)
T ss_pred eeecHHHHHHHhccc------cCceEEEEcCCCCEEEecCCCCC
Confidence 111236899999999 99999999999998877655554
|
|
| >COG4312 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.014 Score=47.96 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=69.7
Q ss_pred CceeEEcCCC-CCCeEEE--EEEe----CCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccc
Q psy15453 71 NIKEIKLTDY-RGKYLVF--FFYP----LDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSL 143 (247)
Q Consensus 71 ~G~~v~l~~~-~gk~vvl--~F~~----a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~ 143 (247)
...+.+|.++ .||-.|| .|++ ...||.|...+..+.-....+..+++.+++||.-+.+++..+.+
T Consensus 60 ~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~-------- 131 (247)
T COG4312 60 ENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKR-------- 131 (247)
T ss_pred CCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHH--------
Confidence 3347888886 6763333 3432 45799999999999888888888899999999999888888777
Q ss_pred cccCCCCCcceeEEecCCchHHHHhCCcc
Q psy15453 144 KKDNRLDKLKIPLLSDLTHEISRDYGVYL 172 (247)
Q Consensus 144 ~~~~~~~~~~~~~l~D~~~~~~~~~~~~~ 172 (247)
++ |+.|+.++..+..+.+.|++..
T Consensus 132 --rm---GW~f~w~Ss~~s~Fn~Df~vsf 155 (247)
T COG4312 132 --RM---GWQFPWVSSTDSDFNRDFQVSF 155 (247)
T ss_pred --hc---CCcceeEeccCccccccccccc
Confidence 34 5679999988888999997743
|
|
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0036 Score=47.07 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=49.4
Q ss_pred CCCeEEEEEEeC------CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcce
Q psy15453 81 RGKYLVFFFYPL------DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKI 154 (247)
Q Consensus 81 ~gk~vvl~F~~a------~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (247)
.|++++|.|.-+ +|||.|+...|.+++...... .+..+|.|.+.+. ..|.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-~~~~lv~v~VG~r---~~Wk-------------------- 73 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-ENARLVYVEVGDR---PEWK-------------------- 73 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-TTEEEEEEE---H---HHHC--------------------
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-CCceEEEEEcCCH---HHhC--------------------
Confidence 467888888722 499999999999999888754 3788888887641 3332
Q ss_pred eEEecCCchHHH--HhCCcccCCCccceeEEEEcCCCcEE
Q psy15453 155 PLLSDLTHEISR--DYGVYLEDKGHSLRGLFIIDREGIVR 192 (247)
Q Consensus 155 ~~l~D~~~~~~~--~~~~~~~~~g~~~p~~~lId~~G~v~ 192 (247)
|++..+.+ .+++. .+|+.+-.+..+++.
T Consensus 74 ----dp~n~fR~~p~~~l~------~IPTLi~~~~~~rL~ 103 (119)
T PF06110_consen 74 ----DPNNPFRTDPDLKLK------GIPTLIRWETGERLV 103 (119)
T ss_dssp -----TTSHHHH--CC---------SSSEEEECTSS-EEE
T ss_pred ----CCCCCceEcceeeee------ecceEEEECCCCccc
Confidence 23333333 68888 899999998765533
|
; PDB: 1V9W_A 1WOU_A. |
| >KOG1731|consensus | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0017 Score=60.28 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=49.8
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc-C-cEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 83 KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI-G-AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 83 k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~-~-~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
|..+|-|+ ++||++|++..|.+.++...+.+= . +.|-+|+.-. +.
T Consensus 58 ~~~lVEFy-~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~--------------------------------~~ 104 (606)
T KOG1731|consen 58 KAKLVEFY-NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCAD--------------------------------EE 104 (606)
T ss_pred hhHHHHHH-HhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccc--------------------------------hh
Confidence 45689999 999999999999999998887632 2 4454555532 12
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCC
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDRE 188 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~ 188 (247)
+..+.+.|++. ..|+....-++
T Consensus 105 N~~lCRef~V~------~~Ptlryf~~~ 126 (606)
T KOG1731|consen 105 NVKLCREFSVS------GYPTLRYFPPD 126 (606)
T ss_pred hhhhHhhcCCC------CCceeeecCCc
Confidence 45788888888 77887777666
|
|
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0057 Score=41.48 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=24.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+..|| ++|||+|++..+.|.++ ++.+-.|+.+.
T Consensus 2 v~ly~-~~~C~~C~~~~~~L~~~-------~~~~~~idi~~ 34 (77)
T TIGR02200 2 ITVYG-TTWCGYCAQLMRTLDKL-------GAAYEWVDIEE 34 (77)
T ss_pred EEEEE-CCCChhHHHHHHHHHHc-------CCceEEEeCcC
Confidence 56788 99999999988877544 55555566554
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >COG3054 Predicted transcriptional regulator [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0093 Score=46.21 Aligned_cols=58 Identities=14% Similarity=0.287 Sum_probs=43.2
Q ss_pred cce-eEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 152 LKI-PLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 152 ~~~-~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
.+| .++.|..+....+|++..++ .+.+++|++|+|.++..|.++ ..++.+++..|..+
T Consensus 124 ~pwSq~vlD~~gvak~AWqL~e~~-----SaivVlDk~G~VkfvkeGaLt-~aevQ~Vi~ll~~l 182 (184)
T COG3054 124 YPWSQFVLDSNGVAKNAWQLKEES-----SAVVVLDKDGRVKFVKEGALT-QAEVQQVIDLLQKL 182 (184)
T ss_pred CCceeeEEccchhhhhhhcccccc-----ceEEEEcCCCcEEEEecCCcc-HHHHHHHHHHHHHh
Confidence 455 56678888555589987542 578999999999999977775 44577888777665
|
|
| >PF13778 DUF4174: Domain of unknown function (DUF4174) | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0091 Score=44.87 Aligned_cols=109 Identities=16% Similarity=0.133 Sum_probs=74.6
Q ss_pred cCCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCccee
Q psy15453 77 LTDYRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIP 155 (247)
Q Consensus 77 l~~~~gk-~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (247)
|+++++| =+||+|-|..--+.=..++..|++....+.++++.++.|..+..... ...
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~----------------------~~~ 60 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSP----------------------GKP 60 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccc----------------------cCc
Confidence 5677776 34566665566667788899999988899999999999865542210 000
Q ss_pred EEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 156 LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 156 ~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
.-......+.+.|++.. ..-+++||++||.+...+.. ..+.+++.+.|++.+
T Consensus 61 ~~~~~~~~lr~~l~~~~-----~~f~~vLiGKDG~vK~r~~~----p~~~~~lf~~ID~MP 112 (118)
T PF13778_consen 61 LSPEDIQALRKRLRIPP-----GGFTVVLIGKDGGVKLRWPE----PIDPEELFDTIDAMP 112 (118)
T ss_pred CCHHHHHHHHHHhCCCC-----CceEEEEEeCCCcEEEecCC----CCCHHHHHHHHhCCc
Confidence 00011257788888762 23579999999999988533 335799999998875
|
|
| >KOG0190|consensus | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0018 Score=59.81 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=35.1
Q ss_pred ceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc
Q psy15453 72 IKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI 115 (247)
Q Consensus 72 G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~ 115 (247)
|+.++..-+ .+|-++|-|+ |.||++|++..|.+++|.+.|++.
T Consensus 373 gknfd~iv~de~KdVLvEfy-APWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 373 GKNFDDIVLDEGKDVLVEFY-APWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred ecCHHHHhhccccceEEEEc-CcccchhhhhhhHHHHHHHHhcCC
Confidence 344444333 3788999999 999999999999999999999963
|
|
| >KOG0191|consensus | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.016 Score=52.37 Aligned_cols=86 Identities=12% Similarity=0.160 Sum_probs=59.5
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++.++.|| ++||++|.+..|...++...++. .+.+..|..+ ..
T Consensus 47 ~~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~----------------------------------~~ 90 (383)
T KOG0191|consen 47 DSPWLVEFY-APWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCD----------------------------------EH 90 (383)
T ss_pred CCceEEEEE-CCCCcchhhhchHHHHHHHHhcC-ceEEEEeCch----------------------------------hh
Confidence 578999999 99999999999999999988874 2333333332 23
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
..+.+.|++. ..|+..++.++..+.... ...+.+.+...+..
T Consensus 91 ~~~~~~y~i~------gfPtl~~f~~~~~~~~~~-----~~~~~~~~~~~~~~ 132 (383)
T KOG0191|consen 91 KDLCEKYGIQ------GFPTLKVFRPGKKPIDYS-----GPRNAESLAEFLIK 132 (383)
T ss_pred HHHHHhcCCc------cCcEEEEEcCCCceeecc-----CcccHHHHHHHHHH
Confidence 5777888888 789888887762333222 14455666665533
|
|
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.027 Score=42.14 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=60.9
Q ss_pred CCCeEEEEEEeCC----CCCCcHHHH--HHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcce
Q psy15453 81 RGKYLVFFFYPLD----FTFVCPTEV--LALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKI 154 (247)
Q Consensus 81 ~gk~vvl~F~~a~----~Cp~C~~~~--~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (247)
.+|.++|++. +. ||..|+..+ |.+.+.. +.++.+.+.+...++
T Consensus 16 e~K~llVylh-s~~~~~~~~fc~~~l~~~~v~~~l----n~~fv~w~~dv~~~e-------------------------- 64 (116)
T cd02991 16 ELRFLLVYLH-GDDHQDTDEFCRNTLCAPEVIEYI----NTRMLFWACSVAKPE-------------------------- 64 (116)
T ss_pred hCCEEEEEEe-CCCCccHHHHHHHHcCCHHHHHHH----HcCEEEEEEecCChH--------------------------
Confidence 5899999999 88 788887664 3333332 335666666665422
Q ss_pred eEEecCCchHHHHhCCcccCCCccceeEEEE---cCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 155 PLLSDLTHEISRDYGVYLEDKGHSLRGLFII---DREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 155 ~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lI---d~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
..+++..+++. ..|...+| +.+.+|+....|..+ .++++..|+.+.
T Consensus 65 ------g~~la~~l~~~------~~P~~~~l~~~~~~~~vv~~i~G~~~----~~~ll~~L~~~~ 113 (116)
T cd02991 65 ------GYRVSQALRER------TYPFLAMIMLKDNRMTIVGRLEGLIQ----PEDLINRLTFIM 113 (116)
T ss_pred ------HHHHHHHhCCC------CCCEEEEEEecCCceEEEEEEeCCCC----HHHHHHHHHHHH
Confidence 15778888888 88999999 666667777656543 678887776653
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >KOG0912|consensus | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.017 Score=49.89 Aligned_cols=91 Identities=22% Similarity=0.312 Sum_probs=66.1
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc---CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI---GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~---~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
...++|+|+ |.||+..+..+|.+.+.+++++++ |-.|.| ++| +
T Consensus 13 ~elvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg-~VD--------------------------------c 58 (375)
T KOG0912|consen 13 NELVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWG-KVD--------------------------------C 58 (375)
T ss_pred ceEEeeeee-hhhchHHHHHhHHHHHHHHHHHHhCCCcceEEE-Ecc--------------------------------c
Confidence 468899999 999999999999999999988853 222222 232 2
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
|.+..++.+|.+. .+|+.=|+ .+|.+....+ -..++++.+++.|+...
T Consensus 59 d~e~~ia~ky~I~------KyPTlKvf-rnG~~~~rEY---Rg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 59 DKEDDIADKYHIN------KYPTLKVF-RNGEMMKREY---RGQRSVEALIEFIEKQL 106 (375)
T ss_pred chhhHHhhhhccc------cCceeeee-eccchhhhhh---ccchhHHHHHHHHHHHh
Confidence 3346788899888 88988877 6888887542 23556788887776543
|
|
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.011 Score=40.78 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=27.0
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
|+.|+ ++|||+|....+.|.++. +. ..+.++-|+.+.
T Consensus 1 V~~f~-~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~ 37 (84)
T TIGR02180 1 VVVFS-KSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLS 37 (84)
T ss_pred CEEEE-CCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCC
Confidence 46677 999999999999998875 21 126677666653
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.018 Score=39.55 Aligned_cols=72 Identities=33% Similarity=0.482 Sum_probs=44.1
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHh
Q psy15453 89 FYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDY 168 (247)
Q Consensus 89 F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 168 (247)
++ +.+||.|+.....++++..++ ++.+=.+... ...++ ..|
T Consensus 5 v~-~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~~----------------------------------~~~~~-~~y 45 (76)
T PF13192_consen 5 VF-SPGCPYCPELVQLLKEAAEEL---GIEVEIIDIE----------------------------------DFEEI-EKY 45 (76)
T ss_dssp EE-CSSCTTHHHHHHHHHHHHHHT---TEEEEEEETT----------------------------------THHHH-HHT
T ss_pred Ee-CCCCCCcHHHHHHHHHHHHhc---CCeEEEEEcc----------------------------------CHHHH-HHc
Confidence 35 777999998888888887776 3444222211 01344 889
Q ss_pred CCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy15453 169 GVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVR 213 (247)
Q Consensus 169 ~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~ 213 (247)
|+. .+|++ +|| |++++. |..+ +.+++.++|+
T Consensus 46 gv~------~vPal-vIn--g~~~~~--G~~p---~~~el~~~l~ 76 (76)
T PF13192_consen 46 GVM------SVPAL-VIN--GKVVFV--GRVP---SKEELKELLE 76 (76)
T ss_dssp T-S------SSSEE-EET--TEEEEE--SS-----HHHHHHHHHH
T ss_pred CCC------CCCEE-EEC--CEEEEE--ecCC---CHHHHHHHhC
Confidence 999 89988 664 888755 4332 3455555543
|
... |
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.028 Score=37.35 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=24.8
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+..|+ ++|||+|+...+.|.+ .++.+..++.+.
T Consensus 2 i~lf~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~ 34 (74)
T TIGR02196 2 VKVYT-TPWCPPCKKAKEYLTS-------KGIAFEEIDVEK 34 (74)
T ss_pred EEEEc-CCCChhHHHHHHHHHH-------CCCeEEEEeccC
Confidence 44566 9999999998776654 478888777764
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.086 Score=41.84 Aligned_cols=105 Identities=10% Similarity=0.023 Sum_probs=47.5
Q ss_pred EEcCCCCCCeEEEEEEeCCCCCCcHHHHH-HHH--HHHHHHHhcCcEEEEEeCCC--hHhHHHHHHHhhccccccccCCC
Q psy15453 75 IKLTDYRGKYLVFFFYPLDFTFVCPTEVL-ALN--EKIDEFHKIGAEVVGVSVDS--HFTHRAWINSLKKDNSLKKDNRL 149 (247)
Q Consensus 75 v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~-~l~--~l~~~~~~~~~~vl~Vs~d~--~~~~~~~~~~~~~~~~~~~~~~~ 149 (247)
+....-.+|+++|.+. ++||..|..+.. .++ ++.+.+. -.||.|-+|. ..++......
T Consensus 30 ~~~Ak~e~KpIfl~ig-~~~C~wChvM~~esf~d~eVa~~lN---~~FI~VkvDree~Pdid~~y~~------------- 92 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIG-YSWCHWCHVMERESFSDPEVAEYLN---RNFIPVKVDREERPDIDKIYMN------------- 92 (163)
T ss_dssp HHHHHHHT--EEEEEE--TT-HHHHHHHHHTTT-HHHHHHHH---HH-EEEEEETTT-HHHHHHHHH-------------
T ss_pred HHHHHhcCCcEEEEEE-ecCCcchhhhcccCcCCHHHHHHHh---CCEEEEEeccccCccHHHHHHH-------------
Confidence 3334445899999999 999999997654 221 2222221 2344444443 2222111110
Q ss_pred CCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCC----CCCHHHHHHHHHhh
Q psy15453 150 DKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPV----GRSVEETLRLVRAF 215 (247)
Q Consensus 150 ~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~----~~~~~~il~~l~~l 215 (247)
......|.. +.|.+++++++|+..+...+..+. .....++++.|..+
T Consensus 93 -------------~~~~~~~~g------GwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~ 143 (163)
T PF03190_consen 93 -------------AVQAMSGSG------GWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAEL 143 (163)
T ss_dssp -------------HHHHHHS---------SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHH
T ss_pred -------------HHHHhcCCC------CCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHH
Confidence 011111444 679999999999999876332221 23455666555443
|
; PDB: 3IRA_A. |
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.069 Score=45.51 Aligned_cols=30 Identities=13% Similarity=0.075 Sum_probs=24.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHH
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDE 111 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~ 111 (247)
.+|.+|++|. -..||+|++....+.++.+.
T Consensus 116 ~ak~~I~vFt-Dp~CpyC~kl~~~l~~~~~~ 145 (251)
T PRK11657 116 DAPRIVYVFA-DPNCPYCKQFWQQARPWVDS 145 (251)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHhhc
Confidence 3567888888 99999999999998876543
|
|
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.053 Score=45.64 Aligned_cols=115 Identities=12% Similarity=0.138 Sum_probs=61.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEE--eC---CCh--Hh-HHHHHHHhhccccc---cccCCC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGV--SV---DSH--FT-HRAWINSLKKDNSL---KKDNRL 149 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~V--s~---d~~--~~-~~~~~~~~~~~~~~---~~~~~~ 149 (247)
.||.+|+.|. -..||+|++..+.+.++.+ .++.|..+ .. .+. .. ..-|... ++.+.+ ......
T Consensus 106 ~~k~~I~vFt-Dp~CpyCkkl~~~l~~~~~----~~v~v~~~~~P~~g~~~~a~~~a~~iwca~-d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 106 QEKHVITVFT-DITCGYCHKLHEQMKDYNA----LGITVRYLAFPRQGLDSQAEKDMKSIWCAA-DRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHHhc----CCeEEEEEeccCCCCCchHHHHHHHHhcCC-CHHHHHHHHHcCCCC
Confidence 4788888898 9999999999988876643 46666554 21 111 11 1112211 000000 001111
Q ss_pred CCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 150 DKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 150 ~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
.........+....+++.+|+. .+|++++ ++|+++ .|.. ..+++.+.|++.+
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~------gTPtiv~--~~G~~~---~G~~----~~~~L~~~l~~~~ 231 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQ------GTPAIVL--SNGTLV---PGYQ----GPKEMKAFLDEHQ 231 (232)
T ss_pred CcccccchHHHhHHHHHHcCCc------cccEEEE--cCCeEe---eCCC----CHHHHHHHHHHcc
Confidence 0001111112346788889998 8998774 367765 2322 3566777776554
|
|
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.079 Score=39.67 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=57.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc--CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI--GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
+.+.+||.|+ ++| |.|.. .|...++..+|.+. .+.+--|..+....
T Consensus 17 ~~~~vlV~F~-A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~----------------------------- 64 (116)
T cd03007 17 KFKYSLVKFD-TAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGE----------------------------- 64 (116)
T ss_pred cCCcEEEEEe-CCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccc-----------------------------
Confidence 3578899999 966 56655 48888888888643 24444444432000
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcE--EEEEecCCCCCCCHHHHHHHHHh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIV--RQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v--~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
..+..+.++|++..+ ..|+..++. +|.. ...+. +.++..+.|++.|+.
T Consensus 65 ~~~~~L~~~y~I~~~----gyPTl~lF~-~g~~~~~~~Y~---G~~r~~~~lv~~v~~ 114 (116)
T cd03007 65 KLNMELGERYKLDKE----SYPVIYLFH-GGDFENPVPYS---GADVTVDALQRFLKG 114 (116)
T ss_pred hhhHHHHHHhCCCcC----CCCEEEEEe-CCCcCCCccCC---CCcccHHHHHHHHHh
Confidence 013578999999733 579988885 4531 11111 122778889888765
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.13 Score=39.41 Aligned_cols=88 Identities=16% Similarity=0.213 Sum_probs=62.3
Q ss_pred EEEEEEeC--CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCc
Q psy15453 85 LVFFFYPL--DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTH 162 (247)
Q Consensus 85 vvl~F~~a--~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~ 162 (247)
..+.|+++ .-+|-+....--|.++.++|....+.+.-|+.|. +.
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~----------------------------------~~ 81 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ----------------------------------SE 81 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC----------------------------------CH
Confidence 34445523 3345666677777888888853346777776653 46
Q ss_pred hHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 163 EISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 163 ~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
.++.+||+. .+|+++++ ++|+++....|..+ .+++++.|+.+..
T Consensus 82 ~LA~~fgV~------siPTLl~F-kdGk~v~~i~G~~~----k~~l~~~I~~~L~ 125 (132)
T PRK11509 82 AIGDRFGVF------RFPATLVF-TGGNYRGVLNGIHP----WAELINLMRGLVE 125 (132)
T ss_pred HHHHHcCCc------cCCEEEEE-ECCEEEEEEeCcCC----HHHHHHHHHHHhc
Confidence 899999999 99999999 78999988866544 4777777776653
|
|
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.031 Score=52.46 Aligned_cols=93 Identities=13% Similarity=0.205 Sum_probs=59.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH-HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL-NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l-~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
++|+++++|+ |.||--|+..-+.. .+.+...+-.++..+=++.-... .
T Consensus 473 ~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~------------------------------p 521 (569)
T COG4232 473 KAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTAND------------------------------P 521 (569)
T ss_pred CCCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCC------------------------------H
Confidence 5579999999 99999999765543 34444444446666554332100 1
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
...++.++||+. ..|+.++++++|.=.....+.. +.+..++.|+.
T Consensus 522 ~~~~lLk~~~~~------G~P~~~ff~~~g~e~~~l~gf~----~a~~~~~~l~~ 566 (569)
T COG4232 522 AITALLKRLGVF------GVPTYLFFGPQGSEPEILTGFL----TADAFLEHLER 566 (569)
T ss_pred HHHHHHHHcCCC------CCCEEEEECCCCCcCcCCccee----cHHHHHHHHHH
Confidence 125778899998 8899999999987554432222 24555555544
|
|
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.09 Score=34.73 Aligned_cols=33 Identities=24% Similarity=0.197 Sum_probs=23.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+..|. +.|||.|......|.+ .++.+..+..|.
T Consensus 2 v~l~~-~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~ 34 (73)
T cd02976 2 VTVYT-KPDCPYCKATKRFLDE-------RGIPFEEVDVDE 34 (73)
T ss_pred EEEEe-CCCChhHHHHHHHHHH-------CCCCeEEEeCCC
Confidence 34555 9999999987666654 367777777665
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.11 Score=34.16 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=25.7
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
|+.|. ..|||.|+.....|.+. ++.+.-++.+....
T Consensus 2 v~ly~-~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~ 37 (72)
T cd02066 2 VVVFS-KSTCPYCKRAKRLLESL-------GIEFEEIDILEDGE 37 (72)
T ss_pred EEEEE-CCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHH
Confidence 45566 99999999988887755 46666666665433
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >KOG0191|consensus | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.18 Score=45.62 Aligned_cols=92 Identities=10% Similarity=0.055 Sum_probs=62.7
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh-cCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK-IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~-~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
....++.|+ +.||++|+..+|...++...++. .++.+..+..+.
T Consensus 162 ~~~~lv~f~-aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~---------------------------------- 206 (383)
T KOG0191|consen 162 DADWLVEFY-APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV---------------------------------- 206 (383)
T ss_pred CcceEEEEe-ccccHHhhhcChHHHHHHHHhccCcceEEEeeccch----------------------------------
Confidence 346788888 99999999999999999998873 456666665541
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhcc
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYT 218 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 218 (247)
...+...+++. ..|+..+.-++.. .. ...+..++.+.+++.++.....
T Consensus 207 ~~~~~~~~~v~------~~Pt~~~f~~~~~--~~--~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 207 HKSLASRLEVR------GYPTLKLFPPGEE--DI--YYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred HHHHhhhhccc------CCceEEEecCCCc--cc--ccccccccHHHHHHHHHhhcCC
Confidence 12445566666 6677777755555 11 1234566678888777665543
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.3 Score=46.39 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=52.0
Q ss_pred CeE-EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 83 KYL-VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 83 k~v-vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++ +-.|. +.+||.|+.....++++..+.. ++..-.|.... .
T Consensus 476 ~~~~i~v~~-~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~----------------------------------~ 518 (555)
T TIGR03143 476 KPVNIKIGV-SLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSH----------------------------------F 518 (555)
T ss_pred CCeEEEEEE-CCCCCCcHHHHHHHHHHHHhCC--CceEEEEECcc----------------------------------c
Confidence 444 55556 9999999998888888877654 44443332221 1
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
.++.+.|++. .+|+++| ||++.+. |.. ..++++++|
T Consensus 519 ~~~~~~~~v~------~vP~~~i---~~~~~~~--G~~----~~~~~~~~~ 554 (555)
T TIGR03143 519 PDLKDEYGIM------SVPAIVV---DDQQVYF--GKK----TIEEMLELI 554 (555)
T ss_pred HHHHHhCCce------ecCEEEE---CCEEEEe--eCC----CHHHHHHhh
Confidence 5788899999 8997766 4566543 432 467777665
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.075 Score=40.74 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=30.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGV 122 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~V 122 (247)
.++++|+.|+ ..+||+|+...+.+.++..++. ++.++.+
T Consensus 4 ~a~~~i~~f~-D~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFF-DYNCGYCKKLAPELEKLLKEDP--DVRVVFK 42 (154)
T ss_pred CCCEEEEEEE-CCCChhHHHhhHHHHHHHHHCC--CceEEEE
Confidence 3678888888 9999999999999999887765 3444443
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.091 Score=42.85 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHH
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNE 107 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~ 107 (247)
.+++.++.|. ...||+|++..+.+.+
T Consensus 76 ~~~~~i~~f~-D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFT-DPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEE-CCCCccHHHHHHHHhh
Confidence 4688888888 9999999999999887
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.2 Score=34.91 Aligned_cols=38 Identities=13% Similarity=0.004 Sum_probs=30.5
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
|..|. .+|||+|.+....|+++..++. ++.+.-|+.+.
T Consensus 3 v~iy~-~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~~ 40 (85)
T PRK11200 3 VVIFG-RPGCPYCVRAKELAEKLSEERD--DFDYRYVDIHA 40 (85)
T ss_pred EEEEe-CCCChhHHHHHHHHHhhccccc--CCcEEEEECCC
Confidence 45666 9999999999999999987653 77777777764
|
|
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.23 Score=32.03 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=26.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
|+.|. ..+||+|.+....|+ ++|+.+-.++.+..+
T Consensus 1 V~vy~-~~~C~~C~~~~~~L~-------~~~i~y~~~dv~~~~ 35 (60)
T PF00462_consen 1 VVVYT-KPGCPYCKKAKEFLD-------EKGIPYEEVDVDEDE 35 (60)
T ss_dssp EEEEE-STTSHHHHHHHHHHH-------HTTBEEEEEEGGGSH
T ss_pred cEEEE-cCCCcCHHHHHHHHH-------HcCCeeeEcccccch
Confidence 45666 999999998877774 347888888777644
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.62 Score=34.17 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=49.1
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
.++++|+=- ++.||.....+.++++.++...+. +.+..+.+-... +-.
T Consensus 19 ~~~~~iFKH-St~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~R------------------------------~vS 66 (105)
T PF11009_consen 19 EKPVLIFKH-STRCPISAMALREFEKFWEESPDE-IPVYYLDVIEYR------------------------------PVS 66 (105)
T ss_dssp -SEEEEEEE--TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGH------------------------------HHH
T ss_pred cCcEEEEEe-CCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeCc------------------------------hhH
Confidence 467666556 999999999999999998887653 777777553211 012
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
..++..||+..+ .|..+|| ++|++++..
T Consensus 67 n~IAe~~~V~He-----SPQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 67 NAIAEDFGVKHE-----SPQVILI-KNGKVVWHA 94 (105)
T ss_dssp HHHHHHHT---------SSEEEEE-ETTEEEEEE
T ss_pred HHHHHHhCCCcC-----CCcEEEE-ECCEEEEEC
Confidence 588999999864 5999999 689998765
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >KOG4277|consensus | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.22 Score=43.19 Aligned_cols=87 Identities=14% Similarity=0.227 Sum_probs=55.1
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCc
Q psy15453 83 KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTH 162 (247)
Q Consensus 83 k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~ 162 (247)
...++.|+ |.||.+|++.-|--+++-.++++-|..+-.=-.| -..| .
T Consensus 44 diW~VdFY-APWC~HCKkLePiWdeVG~elkdig~PikVGKlD-------------------------aT~f-------~ 90 (468)
T KOG4277|consen 44 DIWFVDFY-APWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLD-------------------------ATRF-------P 90 (468)
T ss_pred CeEEEEee-chhhhhcccccchhHHhCcchhhcCCceeecccc-------------------------cccc-------h
Confidence 46789999 9999999999888888766666544322110001 1122 4
Q ss_pred hHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 163 EISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 163 ~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
.++..||+. .+|+.-++- ++.++.. .| ++.-+++++....
T Consensus 91 aiAnefgiq------GYPTIk~~k-gd~a~dY-RG----~R~Kd~iieFAhR 130 (468)
T KOG4277|consen 91 AIANEFGIQ------GYPTIKFFK-GDHAIDY-RG----GREKDAIIEFAHR 130 (468)
T ss_pred hhHhhhccC------CCceEEEec-CCeeeec-CC----CccHHHHHHHHHh
Confidence 788999999 889888884 4444322 13 2334666666544
|
|
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.33 Score=33.37 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=26.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
.+..|..|. .+|||+|.+.-..|++ .|+.+-.++.+.
T Consensus 6 ~~~~V~ly~-~~~Cp~C~~ak~~L~~-------~gi~y~~idi~~ 42 (79)
T TIGR02190 6 KPESVVVFT-KPGCPFCAKAKATLKE-------KGYDFEEIPLGN 42 (79)
T ss_pred CCCCEEEEE-CCCCHhHHHHHHHHHH-------cCCCcEEEECCC
Confidence 344466677 9999999998877753 377777777765
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.3 Score=37.87 Aligned_cols=49 Identities=12% Similarity=-0.013 Sum_probs=36.9
Q ss_pred EEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHH-hcCcEEEEEeC
Q psy15453 75 IKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH-KIGAEVVGVSV 124 (247)
Q Consensus 75 v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~-~~~~~vl~Vs~ 124 (247)
+.+-+-.++++|+.|+ ...||+|.+..+.+.++.+++- ...+.++....
T Consensus 5 ~~~G~~~a~~~v~~f~-d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFF-DFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp EEES-TTTSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CeecCCCCCeEEEEEE-CCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 3344445788888888 9999999999999999999982 33577777754
|
... |
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.33 Score=33.15 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=24.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
|+.|. ..|||+|...-..|.++.- .+.++-|+.+.
T Consensus 2 v~~y~-~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~ 36 (82)
T cd03419 2 VVVFS-KSYCPYCKRAKSLLKELGV-----KPAVVELDQHE 36 (82)
T ss_pred EEEEE-cCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCC
Confidence 34555 9999999998888887633 34555555543
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=92.39 E-value=1.2 Score=41.94 Aligned_cols=37 Identities=16% Similarity=0.015 Sum_probs=26.4
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEE
Q psy15453 83 KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGV 122 (247)
Q Consensus 83 k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~V 122 (247)
..-+..|. +..||+|+.....++++..+.. ++..-.|
T Consensus 117 ~~~i~~fv-~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~i 153 (517)
T PRK15317 117 DFHFETYV-SLSCHNCPDVVQALNLMAVLNP--NITHTMI 153 (517)
T ss_pred CeEEEEEE-cCCCCCcHHHHHHHHHHHHhCC--CceEEEE
Confidence 34466666 9999999998888888876543 4554443
|
|
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.38 Score=35.48 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=17.6
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEK 108 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l 108 (247)
|+.|. .+|||+|.+....|+++
T Consensus 15 V~vys-~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFV-KFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEE-CCCChHHHHHHHHHHHc
Confidence 66777 99999999877777655
|
|
| >KOG3425|consensus | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.38 Score=36.00 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=33.6
Q ss_pred CCCeEEEEEEeC-------CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 81 RGKYLVFFFYPL-------DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 81 ~gk~vvl~F~~a-------~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+|+-+.+.|.-+ +|||.|.+..|-+.+..+...+ ++.||-|-+.+
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG~ 75 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVGN 75 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEecC
Confidence 466566666522 5999999999999998885543 78888887654
|
|
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.87 Score=39.14 Aligned_cols=89 Identities=11% Similarity=0.089 Sum_probs=58.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+.+|||.|| -..++.|...-..|..++.+|. .+.|+-|....
T Consensus 146 ~~~VVVHiY-~~~~~~C~~mn~~L~~LA~kyp--~vKFvkI~a~~----------------------------------- 187 (265)
T PF02114_consen 146 STWVVVHIY-EPGFPRCEIMNSCLECLARKYP--EVKFVKIRASK----------------------------------- 187 (265)
T ss_dssp T-EEEEEEE--TTSCCHHHHHHHHHHHHHH-T--TSEEEEEEECG-----------------------------------
T ss_pred CcEEEEEEE-eCCCchHHHHHHHHHHHHHhCC--ceEEEEEehhc-----------------------------------
Confidence 346777777 9999999999999999999998 68998876542
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC---CCCCCHHHHHHHHHhh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL---PVGRSVEETLRLVRAF 215 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~---~~~~~~~~il~~l~~l 215 (247)
..+...|... .+|+.+++ ++|.++..+++-. +..-...++-..|...
T Consensus 188 ~~~~~~f~~~------~LPtllvY-k~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 188 CPASENFPDK------NLPTLLVY-KNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp CCTTTTS-TT------C-SEEEEE-ETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred cCcccCCccc------CCCEEEEE-ECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 0133455555 77998888 6999999886533 2334455555555443
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.89 Score=32.68 Aligned_cols=27 Identities=19% Similarity=0.010 Sum_probs=19.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 93 DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 93 ~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+|||+|.+.-..|+++ |+.+..+..+.
T Consensus 25 ~~Cp~C~~ak~lL~~~-------~i~~~~~di~~ 51 (97)
T TIGR00365 25 PQCGFSARAVQILKAC-------GVPFAYVNVLE 51 (97)
T ss_pred CCCchHHHHHHHHHHc-------CCCEEEEECCC
Confidence 7999999877776653 66666666643
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.76 Score=30.82 Aligned_cols=32 Identities=22% Similarity=0.163 Sum_probs=23.8
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 87 FFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 87 l~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
..|. .++||.|++....|++ .|+.+-.+..+.
T Consensus 4 ~ly~-~~~C~~C~ka~~~L~~-------~gi~~~~~di~~ 35 (73)
T cd03027 4 TIYS-RLGCEDCTAVRLFLRE-------KGLPYVEINIDI 35 (73)
T ss_pred EEEe-cCCChhHHHHHHHHHH-------CCCceEEEECCC
Confidence 4455 8999999988877774 377777777764
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.63 Score=33.61 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
|+.|. .+|||+|.+.-.-|.++ ++.+-.|..|.
T Consensus 10 Vvvys-k~~Cp~C~~ak~~L~~~-------~i~~~~vdid~ 42 (99)
T TIGR02189 10 VVIFS-RSSCCMCHVVKRLLLTL-------GVNPAVHEIDK 42 (99)
T ss_pred EEEEE-CCCCHHHHHHHHHHHHc-------CCCCEEEEcCC
Confidence 56677 89999999876655543 55555566654
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.91 Score=32.03 Aligned_cols=27 Identities=15% Similarity=0.019 Sum_probs=18.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 93 DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 93 ~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+|||+|......|++. ++.+-.+..+.
T Consensus 21 ~~Cp~C~~ak~~L~~~-------~i~y~~idv~~ 47 (90)
T cd03028 21 PRCGFSRKVVQILNQL-------GVDFGTFDILE 47 (90)
T ss_pred CCCcHHHHHHHHHHHc-------CCCeEEEEcCC
Confidence 5999999877766654 56666665543
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
| >PRK10638 glutaredoxin 3; Provisional | Back alignment and domain information |
|---|
Probab=90.90 E-value=1.1 Score=31.01 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=23.2
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 87 FFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 87 l~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
..|. ..|||+|.+....|++ +++.+-.+..+..
T Consensus 5 ~ly~-~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~~ 37 (83)
T PRK10638 5 EIYT-KATCPFCHRAKALLNS-------KGVSFQEIPIDGD 37 (83)
T ss_pred EEEE-CCCChhHHHHHHHHHH-------cCCCcEEEECCCC
Confidence 3444 8999999988877774 3666666666653
|
|
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.7 Score=31.43 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=22.2
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 87 FFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 87 l~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
..|+ .++||.|......|++. |+.+-.++.+.
T Consensus 2 ~ly~-~~~Cp~C~~a~~~L~~~-------~i~~~~~di~~ 33 (79)
T TIGR02181 2 TIYT-KPYCPYCTRAKALLSSK-------GVTFTEIRVDG 33 (79)
T ss_pred EEEe-cCCChhHHHHHHHHHHc-------CCCcEEEEecC
Confidence 4556 99999999888777643 55555555543
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=90.67 E-value=1.2 Score=29.73 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=24.0
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+..|. .++||.|......|++ .++.+-.++.+.
T Consensus 2 i~ly~-~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~ 34 (75)
T cd03418 2 VEIYT-KPNCPYCVRAKALLDK-------KGVDYEEIDVDG 34 (75)
T ss_pred EEEEe-CCCChHHHHHHHHHHH-------CCCcEEEEECCC
Confidence 34556 8999999987777764 367777777665
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.49 E-value=1.2 Score=30.77 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=26.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC--hHhHHHHHH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS--HFTHRAWIN 135 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~--~~~~~~~~~ 135 (247)
+..|- -++||+|.+.-..|. ++|+.+.-|..+. .+....+++
T Consensus 3 v~iyt-~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~ 46 (80)
T COG0695 3 VTIYT-KPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVK 46 (80)
T ss_pred EEEEE-CCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHH
Confidence 34444 788999998877776 3466666655544 334444444
|
|
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=89.19 E-value=0.76 Score=36.21 Aligned_cols=40 Identities=20% Similarity=0.103 Sum_probs=32.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGV 122 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~V 122 (247)
.++++|+.|+ ...||+|....+.+.++..++.. ++.+.-+
T Consensus 14 ~~~~~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFF-SYGCPHCYNFEPILEAWVKKLPK-DVKFEKV 53 (178)
T ss_pred CCCcEEEEEE-CCCCcchhhhhHHHHHHHHhCCC-CceEEEc
Confidence 5788899999 99999999999999999888743 4555433
|
It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. |
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=89.16 E-value=1.4 Score=30.81 Aligned_cols=37 Identities=14% Similarity=-0.039 Sum_probs=25.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
|+.|- .+|||+|.+....|+++..++. ++.+.-++.+
T Consensus 2 V~vys-~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFG-RPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEEe-CCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 34455 8999999999888887754432 4555555554
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=89.12 E-value=3.7 Score=38.63 Aligned_cols=31 Identities=23% Similarity=0.069 Sum_probs=23.7
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHH
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH 113 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~ 113 (247)
+..-+..|. +..||+|+.....++++..+..
T Consensus 117 ~~~~i~~f~-~~~Cp~Cp~~v~~~~~~a~~~p 147 (515)
T TIGR03140 117 GPLHFETYV-SLTCQNCPDVVQALNQMALLNP 147 (515)
T ss_pred CCeEEEEEE-eCCCCCCHHHHHHHHHHHHhCC
Confidence 345567777 9999999988888887766643
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.90 E-value=2.1 Score=29.63 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=24.4
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+..|. .+|||+|......|. ++|+.+-.|..+.
T Consensus 3 v~lYt-~~~Cp~C~~ak~~L~-------~~gI~~~~idi~~ 35 (81)
T PRK10329 3 ITIYT-RNDCVQCHATKRAME-------SRGFDFEMINVDR 35 (81)
T ss_pred EEEEe-CCCCHhHHHHHHHHH-------HCCCceEEEECCC
Confidence 34455 899999998777664 3588887777765
|
|
| >cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins | Back alignment and domain information |
|---|
Probab=88.83 E-value=1.2 Score=30.68 Aligned_cols=35 Identities=17% Similarity=0.030 Sum_probs=25.8
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEe
Q psy15453 87 FFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVS 123 (247)
Q Consensus 87 l~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs 123 (247)
..|+ ...||+|....+.+.++..... .++.+.-+.
T Consensus 2 ~~f~-d~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~~ 36 (98)
T cd02972 2 VEFF-DPLCPYCYLFEPELEKLLYADD-GGVRVVYRP 36 (98)
T ss_pred eEEE-CCCCHhHHhhhHHHHHHHhhcC-CcEEEEEec
Confidence 4566 9999999999999999874443 356655443
|
Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. |
| >PRK10824 glutaredoxin-4; Provisional | Back alignment and domain information |
|---|
Probab=88.34 E-value=1.7 Score=32.48 Aligned_cols=16 Identities=19% Similarity=-0.047 Sum_probs=12.8
Q ss_pred CCCCCcHHHHHHHHHH
Q psy15453 93 DFTFVCPTEVLALNEK 108 (247)
Q Consensus 93 ~~Cp~C~~~~~~l~~l 108 (247)
++||+|.+...-|+++
T Consensus 28 p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 28 PSCGFSAQAVQALSAC 43 (115)
T ss_pred CCCchHHHHHHHHHHc
Confidence 4999999887777654
|
|
| >KOG0914|consensus | Back alignment and domain information |
|---|
Probab=88.28 E-value=0.74 Score=38.18 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=31.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEE
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEV 119 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~v 119 (247)
.++-+|.|| +.|.|-|....|-+.++..+|...+..+
T Consensus 144 ~t~WlIeFf-a~ws~~Cv~~spvfaeLS~kyn~~~lkF 180 (265)
T KOG0914|consen 144 RTYWLIEFF-ACWSPKCVRFSPVFAELSIKYNNNLLKF 180 (265)
T ss_pred ceEEEEEEE-eecChhhcccccccHHHHHHhCCCCCcc
Confidence 347799999 9999999999999999999997555554
|
|
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=88.05 E-value=1.8 Score=28.86 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=23.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
|+.|. .+|||.|.+....|++ .++.+-.++.+.
T Consensus 3 v~lys-~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~~ 35 (72)
T cd03029 3 VSLFT-KPGCPFCARAKAALQE-------NGISYEEIPLGK 35 (72)
T ss_pred EEEEE-CCCCHHHHHHHHHHHH-------cCCCcEEEECCC
Confidence 34555 8999999998776663 367766666654
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=87.76 E-value=1.2 Score=29.89 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=23.1
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 88 FFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 88 ~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
.|. ..+||.|+.....|++ +|+.+-.+..+.
T Consensus 3 ly~-~~~Cp~C~~ak~~L~~-------~~i~~~~~di~~ 33 (72)
T TIGR02194 3 VYS-KNNCVQCKMTKKALEE-------HGIAFEEINIDE 33 (72)
T ss_pred EEe-CCCCHHHHHHHHHHHH-------CCCceEEEECCC
Confidence 344 8999999998888864 477777776664
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >PRK10954 periplasmic protein disulfide isomerase I; Provisional | Back alignment and domain information |
|---|
Probab=86.28 E-value=0.83 Score=37.55 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=29.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGV 122 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~V 122 (247)
.|++.|+.|+ .-.||+|....+.+ ..+.+.+.+ ++.++-+
T Consensus 36 ~~~~~VvEff-dy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~ 78 (207)
T PRK10954 36 AGEPQVLEFF-SFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKY 78 (207)
T ss_pred CCCCeEEEEe-CCCCccHHHhcccccchHHHHHhCCC-CCeEEEe
Confidence 4688899999 99999999988765 666666653 5555543
|
|
| >cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum | Back alignment and domain information |
|---|
Probab=83.57 E-value=20 Score=28.38 Aligned_cols=125 Identities=11% Similarity=0.113 Sum_probs=70.9
Q ss_pred CCCCCCceeeeeecCCceeEEcCCC---CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc----------------C
Q psy15453 56 MKPAPYWKGTAVVDGNIKEIKLTDY---RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI----------------G 116 (247)
Q Consensus 56 G~~~P~f~l~~~~d~~G~~v~l~~~---~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~----------------~ 116 (247)
|..+|++.+... .+++++.|.+. .|++-|+.|- +.-- +..+...|.++.+.+... =
T Consensus 1 G~R~~~a~V~r~--aD~~p~~L~~~~~adGrfrI~vFa-gd~~--~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~ 75 (167)
T cd02979 1 GRRFPSAPVVRQ--ADALPVHLGHRLPADGRFRIYVFA-GDIA--PAQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSV 75 (167)
T ss_pred CCcCCCceEEEe--cCCCCHhHhhhccCCCCEEEEEEc-CCCC--chhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCc
Confidence 567888888654 36788888754 4899988887 4322 244445555555555321 1
Q ss_pred cEEEEEeCCChHhH--HHHHHHhhccccccccCCCCCcceeEEecCC------chHHHHhCCcccCCCccceeEEEEcCC
Q psy15453 117 AEVVGVSVDSHFTH--RAWINSLKKDNSLKKDNRLDKLKIPLLSDLT------HEISRDYGVYLEDKGHSLRGLFIIDRE 188 (247)
Q Consensus 117 ~~vl~Vs~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~------~~~~~~~~~~~~~~g~~~p~~~lId~~ 188 (247)
++++.|......+. ...-... +++-...+. ..+.++.|.. +...+.||+.. .....++|-||
T Consensus 76 ~~~~~I~~~~~~~~e~~dlP~~~---~p~~~~~~~--~~~~v~~d~~~~~~~~~~~~~~~gv~~-----~~g~vvvvRPD 145 (167)
T cd02979 76 FDVVTIHAAPRREIELLDLPAVL---RPFGEKKGW--DYEKIYADDDSYHEGHGDAYEKYGIDP-----ERGAVVVVRPD 145 (167)
T ss_pred EEEEEEecCCccccchhhCcHhh---cCCCCcccc--ceeeEEecCccccCCcccHHHhhCCCC-----CCCCEEEECCC
Confidence 56777755432211 1111111 111112222 2234455543 56888999763 23679999999
Q ss_pred CcEEEEE
Q psy15453 189 GIVRQIT 195 (247)
Q Consensus 189 G~v~~~~ 195 (247)
|-|-++.
T Consensus 146 gyVg~~~ 152 (167)
T cd02979 146 QYVALVG 152 (167)
T ss_pred CeEEEEe
Confidence 9888764
|
PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria. |
| >TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family | Back alignment and domain information |
|---|
Probab=82.32 E-value=8.9 Score=28.04 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccce
Q psy15453 101 EVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLR 180 (247)
Q Consensus 101 ~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p 180 (247)
...=|++..+++++.+..=+.|++++.+...+...-. ...+++.....++++.+|+. ++|
T Consensus 36 S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~la--------------pgl~l~P~sgddLa~rL~l~------hYP 95 (105)
T TIGR03765 36 SRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRALA--------------PGLPLLPVSGDDLAERLGLR------HYP 95 (105)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc--------------CCCcccCCCHHHHHHHhCCC------ccc
Confidence 3444888889999889998999999988887765521 35566666678999999999 888
Q ss_pred eEEEEcCCC
Q psy15453 181 GLFIIDREG 189 (247)
Q Consensus 181 ~~~lId~~G 189 (247)
++|..+|
T Consensus 96 --vLit~tg 102 (105)
T TIGR03765 96 --VLITATG 102 (105)
T ss_pred --EEEecCc
Confidence 4566665
|
This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE. |
| >COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.90 E-value=4.6 Score=39.00 Aligned_cols=81 Identities=14% Similarity=0.007 Sum_probs=47.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.+||++|+.- .+||.-|..+..+- .++++-+ |-.||.|-+|..|.- .++.+ +
T Consensus 42 edkPIflSIG-ys~CHWChVM~~ESf~d~eiA~~l---N~~FV~IKVDREERP--DvD~~--------Y----------- 96 (667)
T COG1331 42 EDKPILLSIG-YSTCHWCHVMAHESFEDPEIAAIL---NENFVPVKVDREERP--DVDSL--------Y----------- 96 (667)
T ss_pred hCCCEEEEec-cccccchHHHhhhcCCCHHHHHHH---HhCceeeeEChhhcc--CHHHH--------H-----------
Confidence 5899999999 99999999764321 1122222 345677777653310 00000 0
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
+.+.+..... . .-|-++++-|||+..+..
T Consensus 97 ----m~~~q~~tG~---G--GWPLtVfLTPd~kPFfag 125 (667)
T COG1331 97 ----MNASQAITGQ---G--GWPLTVFLTPDGKPFFAG 125 (667)
T ss_pred ----HHHHHHhccC---C--CCceeEEECCCCceeeee
Confidence 1222222222 1 459999999999988765
|
|
| >COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.43 E-value=3.4 Score=34.54 Aligned_cols=47 Identities=17% Similarity=0.100 Sum_probs=35.8
Q ss_pred cCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcC
Q psy15453 69 DGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG 116 (247)
Q Consensus 69 d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~ 116 (247)
..++..+-..+..++++++.|. ..-||+|...++.|.+.+....+..
T Consensus 71 ~~~~~~~~~G~~~~~v~v~~f~-d~~Cp~C~~~~~~l~~~~i~~~~~~ 117 (244)
T COG1651 71 TPDGKDVVLGNPYAPVTVVEFF-DYTCPYCKEAFPELKKKYIDDGKVR 117 (244)
T ss_pred cCCCCcccccCCCCCceEEEEe-cCcCccHHHHHHHHHHHhhhcCCCc
Confidence 3455555555556688888888 9999999999999999777766443
|
|
| >PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5 | Back alignment and domain information |
|---|
Probab=80.93 E-value=10 Score=29.36 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccc
Q psy15453 100 TEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSL 179 (247)
Q Consensus 100 ~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~ 179 (247)
....=|++..+++++.+..=+.|++++.+.+.+...-. ...+++.....++++.+++. ++
T Consensus 73 ~S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~la--------------pgl~l~P~sgddLA~rL~l~------HY 132 (142)
T PF11072_consen 73 LSRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQLA--------------PGLPLLPVSGDDLARRLGLS------HY 132 (142)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc--------------CCCeecCCCHHHHHHHhCCC------cc
Confidence 33444788888999889999999999988888766532 35566666678999999999 88
Q ss_pred eeEEEEcCCC
Q psy15453 180 RGLFIIDREG 189 (247)
Q Consensus 180 p~~~lId~~G 189 (247)
| ++|..+|
T Consensus 133 P--vLIt~~g 140 (142)
T PF11072_consen 133 P--VLITATG 140 (142)
T ss_pred c--EEeecCC
Confidence 8 4555555
|
Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE. |
| >PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products | Back alignment and domain information |
|---|
Probab=80.38 E-value=8.6 Score=30.58 Aligned_cols=119 Identities=11% Similarity=0.012 Sum_probs=60.5
Q ss_pred ccccccccCCCCCCceeeeeecCCceeEEcCCC---CCCeEEEEEEeCCCCCCcHHHHHHHHHHH-------HHHHhc--
Q psy15453 48 EGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDY---RGKYLVFFFYPLDFTFVCPTEVLALNEKI-------DEFHKI-- 115 (247)
Q Consensus 48 ~~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~---~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~-------~~~~~~-- 115 (247)
.....+.+|..+|+..+.. =.||+++.|.+. .|++-|++|-...-.+.+...+..+.+.. .+|...
T Consensus 25 ~~a~~l~~G~Rlp~~~v~r--~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~ 102 (169)
T PF07976_consen 25 SLAGGLRPGRRLPSAKVVR--HADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDR 102 (169)
T ss_dssp GGBTTS-TTCB----EEEE--TTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS
T ss_pred ccccCcCCccccCCceEEE--EcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCC
Confidence 3456799999999999853 357899999865 48999999984444555544444444433 244322
Q ss_pred ----CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC------CchHHHHhCCc
Q psy15453 116 ----GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL------THEISRDYGVY 171 (247)
Q Consensus 116 ----~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~------~~~~~~~~~~~ 171 (247)
-++++.|...+..+.+ +.+--.-++++....++ ..+.++.|. .+...+.||+.
T Consensus 103 ~~~s~~~~~~I~~~~~~~~e-~~dlP~~~~p~~~~~~~--~~~~vy~Dd~~~~~~~g~~y~~~Gid 165 (169)
T PF07976_consen 103 DPDSVFDVLLIHSSPRDEVE-LFDLPEIFRPFDGKRGW--DYWKVYVDDESYHSGHGDAYEKYGID 165 (169)
T ss_dssp -TTSSEEEEEEESS-CCCS--GGGS-CCCS-EETTTTC----SSEEE-S-SSSSTT--HHHHCTBB
T ss_pred CCCCeeEEEEEecCCCCcee-HHHCcHhhCcccCCCCc--cceeEEecCcccccCcccHHHhhCCC
Confidence 2788888765322111 11111122233333333 345666664 36788888865
|
The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D. |
| >KOG0911|consensus | Back alignment and domain information |
|---|
Probab=80.26 E-value=1.3 Score=36.89 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=36.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
+++..++.|| +.||.+|.....-+..+.+.+ .+++++-+..+..
T Consensus 16 ~~~~~~~~f~-a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~~ 59 (227)
T KOG0911|consen 16 KGKLLVLHFW-AIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEEF 59 (227)
T ss_pred ccchhhhhhh-hhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhhh
Confidence 7889999999 999999999888888887777 3677777766553
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=80.18 E-value=5.6 Score=36.70 Aligned_cols=67 Identities=9% Similarity=-0.082 Sum_probs=48.7
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
.-+..+-.+.+. -++|+.|++.+++|..-|+..- ++- .++...+...+...+++.+++|-||.|..+
T Consensus 271 ~Ree~L~rL~v~---l~~~~~v~l~~LRg~~RvvIvA-G~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~ 337 (453)
T PLN03098 271 TRDETLSRLPVR---LSTNRIVELVQLRDITRPVILA-GTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWG 337 (453)
T ss_pred HhhhhhccceEe---ccCCCEEeHHHhcCcceEEEEE-CCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence 334455555542 2357799999999975544443 333 678888899999999999999999999775
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 247 | ||||
| 3tjf_A | 254 | Crystal Structure Of Human Peroxiredoxin Iv C51a Mu | 1e-76 | ||
| 3tkp_A | 246 | Crystal Structure Of Full-Length Human Peroxiredoxi | 1e-76 | ||
| 3tjb_A | 254 | Crystal Structure Of Wild-Type Human Peroxiredoxin | 2e-76 | ||
| 3tkr_A | 246 | Crystal Structure Of Full-Length Human Peroxiredoxi | 7e-76 | ||
| 3tjk_A | 254 | Crystal Structure Of Human Peroxiredoxin Iv C245a M | 1e-75 | ||
| 3tks_A | 246 | Crystal Structure Of Full-Length Human Peroxiredoxi | 2e-75 | ||
| 2pn8_A | 211 | Crystal Structure Of Human Peroxiredoxin 4 (Thiored | 5e-75 | ||
| 3qpm_A | 240 | Crystal Structure Of Peroxiredoxin Prx4 From Pseudo | 1e-74 | ||
| 3tjj_A | 254 | Crystal Structure Of Human Peroxiredoxin Iv C245a M | 2e-74 | ||
| 1qmv_A | 197 | Thioredoxin Peroxidase B From Red Blood Cells Lengt | 4e-67 | ||
| 1qq2_A | 199 | Crystal Structure Of A Mammalian 2-Cys Peroxiredoxi | 5e-64 | ||
| 2rii_A | 199 | Crystal Structure Of Human Peroxiredoxin I In Compl | 2e-63 | ||
| 1zye_A | 220 | Crystal Strucutre Analysis Of Bovine Mitochondrial | 1e-62 | ||
| 2z9s_A | 199 | Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXI | 1e-62 | ||
| 3hy2_A | 206 | Crystal Structure Of Sulfiredoxin In Complex With P | 4e-61 | ||
| 3ztl_A | 222 | Crystal Structure Of Decameric Form Of Peroxiredoxi | 2e-56 | ||
| 3zvj_D | 219 | Crystal Structure Of High Molecular Weight (Hmw) Fo | 2e-56 | ||
| 3zvj_A | 219 | Crystal Structure Of High Molecular Weight (Hmw) Fo | 4e-56 | ||
| 3sbc_A | 216 | Crystal Structure Of Saccharomyces Cerevisiae Tsa1c | 9e-52 | ||
| 1uul_A | 202 | Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cr | 2e-50 | ||
| 3tue_A | 219 | The Structure Of Tryparedoxin Peroxidase I From Lei | 4e-49 | ||
| 1e2y_A | 188 | Tryparedoxin Peroxidase From Crithidia Fasciculata | 8e-43 | ||
| 2h66_A | 213 | The Crystal Structure Of Plasmodium Vivax 2-Cys Per | 9e-41 | ||
| 2h01_A | 192 | Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I | 1e-37 | ||
| 1zof_A | 198 | Crystal Structure Of Alkyl Hydroperoxide-Reductase | 5e-37 | ||
| 2c0d_A | 221 | Structure Of The Mitochondrial 2-Cys Peroxiredoxin | 1e-34 | ||
| 1yep_A | 186 | Structural And Biochemical Analysis Of The Link Bet | 1e-31 | ||
| 1yf1_A | 186 | Structural And Biochemical Analysis Of The Link Bet | 6e-31 | ||
| 1yf0_A | 186 | Structural And Biochemical Analysis Of The Link Bet | 8e-31 | ||
| 1yex_A | 186 | Structural And Biochemical Analysis Of The Link Bet | 8e-31 | ||
| 1n8j_A | 186 | Crystal Structure Of Ahpc With Active Site Cysteine | 2e-30 | ||
| 3emp_A | 186 | Crystal Structure Of The S-Acetanilide Modified For | 2e-30 | ||
| 1we0_A | 187 | Crystal Structure Of Peroxiredoxin (Ahpc) From Amph | 4e-27 | ||
| 2bmx_A | 195 | Mycobacterium Tuberculosis Ahpc Length = 195 | 1e-23 | ||
| 2e2g_A | 250 | Crystal Structure Of Archaeal Peroxiredoxin, Thiore | 6e-23 | ||
| 3a2v_A | 249 | Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Comp | 6e-23 | ||
| 3a5w_A | 249 | Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1 | 7e-23 | ||
| 1x0r_A | 249 | Thioredoxin Peroxidase From Aeropyrum Pernix K1 Len | 4e-22 | ||
| 3a2w_A | 249 | Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Pero | 1e-21 | ||
| 2e2m_A | 250 | Crystal Structure Of Archaeal Peroxiredoxin, Thiore | 1e-21 | ||
| 2zct_A | 249 | Oxidation Of Archaeal Peroxiredoxin Involves A Hype | 1e-21 | ||
| 2cv4_A | 250 | Crystal Structure Of An Archaeal Peroxiredoxin From | 8e-21 | ||
| 2v2g_A | 233 | Crystal Structure Of The C45s Mutant Of The Peroxir | 2e-14 | ||
| 2ywn_A | 157 | Crystal Structure Of Peroxiredoxin-Like Protein Fro | 4e-14 | ||
| 1xcc_A | 220 | 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2 | 4e-14 | ||
| 3hjp_A | 164 | The Crystal Structure Of Bcp4 From Sulfolobus Solfa | 1e-13 | ||
| 3tb2_A | 220 | 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2 | 1e-12 | ||
| 1xxu_A | 153 | Crystal Structure Of Ahpe From Mycrobacterium Tuber | 2e-12 | ||
| 1xvw_A | 160 | Crystal Structure Of Ahpe From Mycobacterium Tuberc | 5e-11 | ||
| 4gqc_A | 164 | Crystal Structure Of Aeropyrum Pernix Peroxiredoxin | 1e-09 | ||
| 1prx_A | 224 | Horf6 A Novel Human Peroxidase Enzyme Length = 224 | 1e-09 | ||
| 2cx3_A | 164 | Crystal Structure Of A Bacterioferritin Comigratory | 3e-09 | ||
| 3gkk_A | 163 | Insights Into The Alkyl Peroxide Reduction Activity | 1e-08 | ||
| 3drn_A | 161 | The Crystal Structure Of Bcp1 From Sulfolobus Sulfa | 1e-07 | ||
| 3gkn_A | 163 | Insights Into The Alkyl Peroxide Reduction Activity | 2e-07 | ||
| 3gkm_A | 163 | Insights Into The Alkyl Peroxide Reduction Activity | 4e-07 | ||
| 3ixr_A | 179 | Crystal Structure Of Xylella Fastidiosa Prxq C47s M | 2e-05 | ||
| 4eo3_A | 322 | Peroxiredoxin Nitroreductase Fusion Enzyme Length = | 2e-04 |
| >pdb|3TJF|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In Reduced Form Length = 254 | Back alignment and structure |
|
| >pdb|3TKP|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In The Reduced Form Length = 246 | Back alignment and structure |
|
| >pdb|3TJB|A Chain A, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv Length = 254 | Back alignment and structure |
|
| >pdb|3TKR|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 With T118e Mutation Length = 246 | Back alignment and structure |
|
| >pdb|3TJK|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Reduced Form Length = 254 | Back alignment and structure |
|
| >pdb|3TKS|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In Three Different Redox States Length = 246 | Back alignment and structure |
|
| >pdb|2PN8|A Chain A, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin Peroxidase) Length = 211 | Back alignment and structure |
|
| >pdb|3QPM|A Chain A, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena Crocea Length = 240 | Back alignment and structure |
|
| >pdb|3TJJ|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Sulfenylated Form Length = 254 | Back alignment and structure |
|
| >pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood Cells Length = 197 | Back alignment and structure |
|
| >pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin, Hbp23. Length = 199 | Back alignment and structure |
|
| >pdb|2RII|A Chain A, Crystal Structure Of Human Peroxiredoxin I In Complex With Sulfiredoxin Length = 199 | Back alignment and structure |
|
| >pdb|1ZYE|A Chain A, Crystal Strucutre Analysis Of Bovine Mitochondrial Peroxiredoxin Iii Length = 220 | Back alignment and structure |
|
| >pdb|2Z9S|A Chain A, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I, Cys52ser Mutant Length = 199 | Back alignment and structure |
|
| >pdb|3HY2|A Chain A, Crystal Structure Of Sulfiredoxin In Complex With Peroxiredoxin I And Atp:mg2+ Length = 206 | Back alignment and structure |
|
| >pdb|3ZTL|A Chain A, Crystal Structure Of Decameric Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 222 | Back alignment and structure |
|
| >pdb|3ZVJ|D Chain D, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219 | Back alignment and structure |
|
| >pdb|3ZVJ|A Chain A, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219 | Back alignment and structure |
|
| >pdb|3SBC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s Mutant Protein Length = 216 | Back alignment and structure |
|
| >pdb|1UUL|A Chain A, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In The Reduced State Length = 202 | Back alignment and structure |
|
| >pdb|3TUE|A Chain A, The Structure Of Tryparedoxin Peroxidase I From Leishmania Major Length = 219 | Back alignment and structure |
|
| >pdb|1E2Y|A Chain A, Tryparedoxin Peroxidase From Crithidia Fasciculata Length = 188 | Back alignment and structure |
|
| >pdb|2H66|A Chain A, The Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin Length = 213 | Back alignment and structure |
|
| >pdb|2H01|A Chain A, Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I Length = 192 | Back alignment and structure |
|
| >pdb|1ZOF|A Chain A, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc) From Helicobacter Pylori Length = 198 | Back alignment and structure |
|
| >pdb|2C0D|A Chain A, Structure Of The Mitochondrial 2-Cys Peroxiredoxin From Plasmodium Falciparum Length = 221 | Back alignment and structure |
|
| >pdb|1YEP|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Olgomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186 | Back alignment and structure |
|
| >pdb|1YF1|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186 | Back alignment and structure |
|
| >pdb|1YF0|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186 | Back alignment and structure |
|
| >pdb|1YEX|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186 | Back alignment and structure |
|
| >pdb|1N8J|A Chain A, Crystal Structure Of Ahpc With Active Site Cysteine Mutated To Serine (C46s) Length = 186 | Back alignment and structure |
|
| >pdb|3EMP|A Chain A, Crystal Structure Of The S-Acetanilide Modified Form Of C165s Ahpc Length = 186 | Back alignment and structure |
|
| >pdb|1WE0|A Chain A, Crystal Structure Of Peroxiredoxin (Ahpc) From Amphibacillus Xylanus Length = 187 | Back alignment and structure |
|
| >pdb|2BMX|A Chain A, Mycobacterium Tuberculosis Ahpc Length = 195 | Back alignment and structure |
|
| >pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form) Length = 250 | Back alignment and structure |
|
| >pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed With Hydrogen Peroxide Length = 249 | Back alignment and structure |
|
| >pdb|3A5W|A Chain A, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1 (Reduced Form) Length = 249 | Back alignment and structure |
|
| >pdb|1X0R|A Chain A, Thioredoxin Peroxidase From Aeropyrum Pernix K1 Length = 249 | Back alignment and structure |
|
| >pdb|3A2W|A Chain A, Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Peroxide-Bound Form) Length = 249 | Back alignment and structure |
|
| >pdb|2E2M|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form) Length = 250 | Back alignment and structure |
|
| >pdb|2ZCT|A Chain A, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent Sulfur Intermediate Length = 249 | Back alignment and structure |
|
| >pdb|2CV4|A Chain A, Crystal Structure Of An Archaeal Peroxiredoxin From The Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix K1 Length = 250 | Back alignment and structure |
|
| >pdb|2V2G|A Chain A, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form Length = 233 | Back alignment and structure |
|
| >pdb|2YWN|A Chain A, Crystal Structure Of Peroxiredoxin-Like Protein From Sulfolobus Tokodaii Length = 157 | Back alignment and structure |
|
| >pdb|1XCC|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220 | Back alignment and structure |
|
| >pdb|3HJP|A Chain A, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus Length = 164 | Back alignment and structure |
|
| >pdb|3TB2|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220 | Back alignment and structure |
|
| >pdb|1XXU|A Chain A, Crystal Structure Of Ahpe From Mycrobacterium Tuberculosis, A 1-Cys Peroxiredoxin Length = 153 | Back alignment and structure |
|
| >pdb|1XVW|A Chain A, Crystal Structure Of Ahpe From Mycobacterium Tuberculosis, A 1-Cys Peroxiredoxin Length = 160 | Back alignment and structure |
|
| >pdb|4GQC|A Chain A, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q Enzyme In Fully- Folded And Locally-unfolded Conformations Length = 164 | Back alignment and structure |
|
| >pdb|1PRX|A Chain A, Horf6 A Novel Human Peroxidase Enzyme Length = 224 | Back alignment and structure |
|
| >pdb|2CX3|A Chain A, Crystal Structure Of A Bacterioferritin Comigratory Protein Peroxiredoxin From The Aeropyrum Pernix K1 (Form-1 Crystal) Length = 164 | Back alignment and structure |
|
| >pdb|3GKK|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped IntermediateLIGAND COMPLEX STRUCTURES Length = 163 | Back alignment and structure |
|
| >pdb|3DRN|A Chain A, The Crystal Structure Of Bcp1 From Sulfolobus Sulfataricus Length = 161 | Back alignment and structure |
|
| >pdb|3GKN|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped Intermediate/ligand Complex Structures Length = 163 | Back alignment and structure |
|
| >pdb|3GKM|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped IntermediateLIGAND COMPLEX STRUCTURES Length = 163 | Back alignment and structure |
|
| >pdb|3IXR|A Chain A, Crystal Structure Of Xylella Fastidiosa Prxq C47s Mutant Length = 179 | Back alignment and structure |
|
| >pdb|4EO3|A Chain A, Peroxiredoxin Nitroreductase Fusion Enzyme Length = 322 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 Length = 220 | Back alignment and structure |
|---|
Score = 340 bits (874), Expect = e-120
Identities = 117/219 (53%), Positives = 145/219 (66%), Gaps = 7/219 (3%)
Query: 27 GSCSHTEMCSFTDSPTKFDHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLV 86
GS H S P + H V + APY+KGTAVV G KEI L D++GKYLV
Sbjct: 2 GSSHHHHHHSSGLVP-RGSHMLEDPAPAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLV 60
Query: 87 FFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKD 146
FFYPLDFTFVCPTE++A ++K EFH + EVV VSVDSHF+H AWIN+ +K+ L
Sbjct: 61 LFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGH- 119
Query: 147 NRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVE 206
+ I LLSDLT +ISRDYGV LE G +LRGLFIID G+++ +++NDLPVGRSVE
Sbjct: 120 -----MNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVE 174
Query: 207 ETLRLVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKE 245
ETLRLV+AFQ+ + HGE P+ W P TI +E
Sbjct: 175 ETLRLVKAFQFVEAHGEVSPANWTPESPTIKPHPTASRE 213
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C Length = 254 | Back alignment and structure |
|---|
Score = 337 bits (867), Expect = e-118
Identities = 129/201 (64%), Positives = 157/201 (78%), Gaps = 6/201 (2%)
Query: 45 DHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLA 104
DH + A + KPAPYW+GTAV+DG KE+KLTDYRGKYLVFFFYPLDFTFVCPTE++A
Sbjct: 54 DHSLHLSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIA 113
Query: 105 LNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI 164
++++EF I EVV SVDS FTH AWIN+ ++ L ++IPLLSDLTH+I
Sbjct: 114 FGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGP------IRIPLLSDLTHQI 167
Query: 165 SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEA 224
S+DYGVYLED GH+LRGLFIID +GI+RQITLNDLPVGRSV+ETLRLV+AFQYTD+HGE
Sbjct: 168 SKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEV 227
Query: 225 CPSGWQPGQRTISNREEDEKE 245
P+GW+PG TI + +
Sbjct: 228 APAGWKPGSETIIPDPAGKLK 248
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} Length = 240 | Back alignment and structure |
|---|
Score = 335 bits (861), Expect = e-118
Identities = 126/201 (62%), Positives = 157/201 (78%), Gaps = 6/201 (2%)
Query: 45 DHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLA 104
DH + A + KPAP W+GTAV++G KE+KL+DYRGKYLVFFFYPLDFTFVCPTE++A
Sbjct: 40 DHSLHLSKAKISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIA 99
Query: 105 LNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI 164
++++ EF I EVV SVDS FTH AWI + +K L +KIPLLSDLTH+I
Sbjct: 100 FSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGP------MKIPLLSDLTHQI 153
Query: 165 SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEA 224
S+DYGVYLED+GH+LRGLFIID +G++RQIT+NDLPVGRSV+ETLRLV+AFQYTD+HGE
Sbjct: 154 SKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEV 213
Query: 225 CPSGWQPGQRTISNREEDEKE 245
CP+GW+PG TI + +
Sbjct: 214 CPAGWKPGSDTIIPDPSGKLK 234
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 330 bits (849), Expect = e-116
Identities = 126/193 (65%), Positives = 152/193 (78%), Gaps = 6/193 (3%)
Query: 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEF 112
PAPYW+GTAV+DG KE+KLTDYRGKYLVFFFYPLDFTFVCPTE++A ++++EF
Sbjct: 19 YFQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEF 78
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYL 172
I EVV SVDS FTH AWIN+ ++ L ++IPLLSDLTH+IS+DYGVYL
Sbjct: 79 RSINTEVVACSVDSQFTHLAWINTPRRQGGLGP------IRIPLLSDLTHQISKDYGVYL 132
Query: 173 EDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPG 232
ED GH+LRGLFIID +GI+RQITLNDLPVGRSV+ETLRLV+AFQYTD+HGE CP+GW+PG
Sbjct: 133 EDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPG 192
Query: 233 QRTISNREEDEKE 245
TI + +
Sbjct: 193 SETIIPDPAGKLK 205
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D Length = 222 | Back alignment and structure |
|---|
Score = 329 bits (846), Expect = e-116
Identities = 99/198 (50%), Positives = 136/198 (68%), Gaps = 9/198 (4%)
Query: 42 TKFDHREGWTN---AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVC 98
D ++ W + + +PAP +KG AV++G KEI L DYRGKY+V FFYP DFTFVC
Sbjct: 26 YDDDDKDRWGSTMVLLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVC 85
Query: 99 PTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158
PTE++A +++++EF+ +V+ S DS ++H AW N +K L +KIPLL+
Sbjct: 86 PTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGH------MKIPLLA 139
Query: 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYT 218
D EIS+ YGV+ E+ G++ RGLFIID GI+RQIT+ND PVGRSV+ETLRL+ AFQ+
Sbjct: 140 DRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAFQFV 199
Query: 219 DEHGEACPSGWQPGQRTI 236
++HGE CP W+ GQ I
Sbjct: 200 EKHGEVCPVNWKRGQHGI 217
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 Length = 202 | Back alignment and structure |
|---|
Score = 327 bits (841), Expect = e-115
Identities = 89/186 (47%), Positives = 129/186 (69%), Gaps = 7/186 (3%)
Query: 52 NAVVMKPAPYWKGTAVV-DGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKID 110
A + PAP + TA++ +G K++ LT Y+GK+LV FFYP+DFTFVCPTE+ ++++
Sbjct: 5 EAEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVK 64
Query: 111 EFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGV 170
EF IG EV+ S+DS ++H AW + +K L + + IP+L+D T I + YGV
Sbjct: 65 EFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQ------MNIPILADKTKCIMKSYGV 118
Query: 171 YLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQ 230
E+ G + RGLFIID + +RQIT+NDLPVGR V+E LRLV+AFQ+ ++HGE CP+ W+
Sbjct: 119 LKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQFVEKHGEVCPANWK 178
Query: 231 PGQRTI 236
PG +T+
Sbjct: 179 PGDKTM 184
|
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} Length = 216 | Back alignment and structure |
|---|
Score = 327 bits (840), Expect = e-115
Identities = 95/195 (48%), Positives = 127/195 (65%), Gaps = 6/195 (3%)
Query: 42 TKFDHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTE 101
+ R A V K AP +K TAVVDG E+ L Y+GKY+V F PL FTFV PTE
Sbjct: 12 SGLVPRGSHMVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTE 71
Query: 102 VLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161
++A +E +F + GA+V+ S DS ++ AW N +K+ L + IPLL+D
Sbjct: 72 IIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGP------INIPLLADTN 125
Query: 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEH 221
H +SRDYGV +E++G +LRGLFIID +G++R IT+NDLPVGR+V+E LRLV AFQ+TD++
Sbjct: 126 HSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWTDKN 185
Query: 222 GEACPSGWQPGQRTI 236
G P W PG TI
Sbjct: 186 GTVLPCNWTPGAATI 200
|
| >1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase; 3.2A {Crithidia fasciculata} SCOP: c.47.1.10 Length = 188 | Back alignment and structure |
|---|
Score = 324 bits (834), Expect = e-114
Identities = 81/186 (43%), Positives = 118/186 (63%), Gaps = 7/186 (3%)
Query: 52 NAVVMKPAPYWKGTAVV-DGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKID 110
A + PAP + A++ +G K++ L+ Y+GKY+V FFYP+DFTFVCPTE++ ++
Sbjct: 5 AAKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAK 64
Query: 111 EFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGV 170
F +I EV+ S DS ++H W + +K L + IP+L+D T I+R YGV
Sbjct: 65 RFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGP------MAIPMLADKTKAIARAYGV 118
Query: 171 YLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQ 230
ED G + RG+FIID G +RQI +ND+P+GR+VEE +RLV A Q+ +EHGE CP+ W+
Sbjct: 119 LDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVEEHGEVCPANWK 178
Query: 231 PGQRTI 236
G
Sbjct: 179 KGDAKK 184
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A Length = 186 | Back alignment and structure |
|---|
Score = 317 bits (814), Expect = e-111
Identities = 63/185 (34%), Positives = 105/185 (56%), Gaps = 10/185 (5%)
Query: 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEF 112
+++ +K A +G E+ D G++ VFFFYP DFTFV PTE+ + + +E
Sbjct: 1 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEEL 60
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYL 172
K+G +V VS D+HFTH+AW +S + + K+K ++ D T ++R++
Sbjct: 61 QKLGVDVYSVSTDTHFTHKAWHSSSET---------IAKIKYAMIGDPTGALTRNFDNMR 111
Query: 173 EDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEH-GEACPSGWQP 231
ED+G + R F++D +GI++ I + +GR + LR ++A QY H GE CP+ W+
Sbjct: 112 EDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKE 171
Query: 232 GQRTI 236
G+ T+
Sbjct: 172 GEATL 176
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A Length = 213 | Back alignment and structure |
|---|
Score = 313 bits (805), Expect = e-109
Identities = 78/197 (39%), Positives = 121/197 (61%), Gaps = 9/197 (4%)
Query: 42 TKFDHREGWTNAVVMKPAPYWKGTAVV-DGNIKEIKLTDYRGK-YLVFFFYPLDFTFVCP 99
+ V K AP++K AV D + E+ LT + GK Y++ +FYPLDFTFVCP
Sbjct: 10 HSSGLVPRGSPTYVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCP 69
Query: 100 TEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159
+E++AL++ +D FH+ E++G SVDS +TH AW + + +K LLSD
Sbjct: 70 SEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGN------IKHTLLSD 123
Query: 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTD 219
+T IS+DY V +D SLR +ID GIV+ + +N+L +GRSV+E LR++ A Q+ +
Sbjct: 124 ITKSISKDYNVLFDD-SVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQHHE 182
Query: 220 EHGEACPSGWQPGQRTI 236
++G+ CP+ WQ G+ ++
Sbjct: 183 KYGDVCPANWQKGKVSM 199
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 Length = 192 | Back alignment and structure |
|---|
Score = 311 bits (800), Expect = e-109
Identities = 71/184 (38%), Positives = 116/184 (63%), Gaps = 9/184 (4%)
Query: 55 VMKPAPYWKGTAVV-DGNIKEIKLTDYRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEF 112
AP +K AV D E+ L+D+ GK Y++ +FYPLDFTFVCP+E++AL++ +D F
Sbjct: 2 FQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSF 61
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYL 172
+ E++G SVDS FTH AW + + +K L+SD++ I+R Y V
Sbjct: 62 KERNVELLGCSVDSKFTHLAWKKTPLSQGGIGN------IKHTLISDISKSIARSYDVLF 115
Query: 173 EDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPG 232
+ +LR +ID++G+V+ + +N+L +GRSV+E LRL+ A Q+ +++G+ CP+ WQ G
Sbjct: 116 NE-SVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYGDVCPANWQKG 174
Query: 233 QRTI 236
+ ++
Sbjct: 175 KESM 178
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 Length = 187 | Back alignment and structure |
|---|
Score = 311 bits (799), Expect = e-109
Identities = 60/186 (32%), Positives = 98/186 (52%), Gaps = 11/186 (5%)
Query: 53 AVVMKPAPYWKGTAVVDGN-IKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDE 111
+++ ++ A G E+ D +GK+ + FYP DF+FVCPTE+ + ++ E
Sbjct: 1 SLIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAE 60
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVY 171
K+G EV VS D+HF H+AW + ++ ++ D + ISR + V
Sbjct: 61 LKKLGVEVYSVSTDTHFVHKAWHE---------NSPAVGSIEYIMIGDPSQTISRQFDVL 111
Query: 172 LEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEH-GEACPSGWQ 230
E+ G + RG FIID +G+++ I +N +GR + V+A QY E+ GE CP+ W+
Sbjct: 112 NEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYVRENPGEVCPAKWE 171
Query: 231 PGQRTI 236
G T+
Sbjct: 172 EGGETL 177
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} Length = 221 | Back alignment and structure |
|---|
Score = 311 bits (800), Expect = e-109
Identities = 70/206 (33%), Positives = 113/206 (54%), Gaps = 9/206 (4%)
Query: 42 TKFDHREGWTNAVVMKPAPYWKGTAV-VDGNIKEIKLTDYRG-KYLVFFFYPLDFTFVCP 99
+ ++V K A + + + I + L+ + G KY FYPL++TFVCP
Sbjct: 14 SGHIEGRHMKLSLVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCP 73
Query: 100 TEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159
TE++ N+ I +F E++G+SVDS ++H AW N + + ++ L+SD
Sbjct: 74 TEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGN------VEFTLVSD 127
Query: 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTD 219
+ +IS++Y V ++ +LRGLFIID+ G VR T+NDLP+GR+V+E LR + + + D
Sbjct: 128 INKDISKNYNVLYDN-SFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSIIHVD 186
Query: 220 EHGEACPSGWQPGQRTISNREEDEKE 245
GE CP W+ GQ+ E +
Sbjct: 187 TSGEVCPINWKKGQKAFKPTTESLID 212
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 Length = 198 | Back alignment and structure |
|---|
Score = 307 bits (788), Expect = e-107
Identities = 76/186 (40%), Positives = 118/186 (63%), Gaps = 10/186 (5%)
Query: 54 VVMKPAPYWKGTAVVDGN--IKEIKLTDYRGKY-LVFFFYPLDFTFVCPTEVLALNEKID 110
VV K AP +K AV+ N + +L+ GK ++ FF+P DFTFVCPTE++A ++++
Sbjct: 2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVK 61
Query: 111 EFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGV 170
+FH+ G V+GVS+DS H AW N+ + + + + P+++D+T ISRDY V
Sbjct: 62 DFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQ------VSFPMVADITKSISRDYDV 115
Query: 171 YLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQ 230
E+ +LRG F+ID+ VR +NDLP+GR+ +E LR+V A + +EHGE CP+GW+
Sbjct: 116 LFEE-AIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWR 174
Query: 231 PGQRTI 236
G + +
Sbjct: 175 KGDKGM 180
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 195 | Back alignment and structure |
|---|
Score = 279 bits (716), Expect = 2e-96
Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 26/203 (12%)
Query: 55 VMKPAPYWKGTAVVDGNI------------KEIKLTDYRGKYLVFFFYPLDFTFVCPTEV 102
+ P ++ TA++ G++ I ++ GK+ V FF+P DFTFVCPTE+
Sbjct: 6 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEI 65
Query: 103 LALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTH 162
A ++ DEF A+++GVS+DS F H W + N L L P+LSD+
Sbjct: 66 AAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRA---------QHNDLKTLPFPMLSDIKR 116
Query: 163 EISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHG 222
E+S+ GV D G + R FI+D ++ ++ VGR+V+E LR++ A Q
Sbjct: 117 ELSQAAGVLNAD-GVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ----SD 171
Query: 223 EACPSGWQPGQRTISNREEDEKE 245
E C S W+ G T+ E +
Sbjct: 172 ELCASNWRKGDPTLDAGELLKAS 194
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 Length = 224 | Back alignment and structure |
|---|
Score = 245 bits (628), Expect = 1e-82
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 17/199 (8%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRG-KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI 115
AP ++ V I+ D+ G + + F +P DFT VC TE+ + EF K
Sbjct: 9 DVAPNFEANTTVG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR 64
Query: 116 GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK 175
+++ +S+DS H AW K N+ + +KL P++ D E++ G+ +
Sbjct: 65 NVKLIALSIDSVEDHLAWS---KDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAE 121
Query: 176 GHS------LRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGW 229
R +F+ + ++ L GR+ +E LR+V + Q T E A P W
Sbjct: 122 KDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDW 181
Query: 230 QPGQRTI---SNREEDEKE 245
+ G + + EE+ K+
Sbjct: 182 KDGDSVMVLPTIPEEEAKK 200
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A Length = 220 | Back alignment and structure |
|---|
Score = 244 bits (625), Expect = 3e-82
Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 18/201 (8%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI 115
P + A + +L Y + + F +P DFT VC TE+ L + ++F K+
Sbjct: 7 ATFPNFTAKASGID--GDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL 64
Query: 116 GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK 175
+++G S +S +H WI +K L+K +IP++ D + E++ + E +
Sbjct: 65 NCKLIGFSCNSKESHDKWIEDIKYYGK------LNKWEIPIVCDESRELANKLKIMDEQE 118
Query: 176 GHS------LRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGW 229
R LF I E ++ L GR+ E LR++++ Q T A P W
Sbjct: 119 KDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQLTYTTPVATPVNW 178
Query: 230 QPGQRTI---SNREEDEKEEL 247
G + + ++++ +
Sbjct: 179 NEGDKCCVIPTLQDDEISKHF 199
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A Length = 233 | Back alignment and structure |
|---|
Score = 243 bits (623), Expect = 1e-81
Identities = 51/199 (25%), Positives = 94/199 (47%), Gaps = 19/199 (9%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI 115
+ P ++ + + ++K D+ G + V F +P DFT V TE+ + + +F K
Sbjct: 7 EVFPNFEADSTI----GKLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKR 62
Query: 116 GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK 175
G +++ +S D+ H+ W +K + +K D + P+++D T E++ G+ D+
Sbjct: 63 GVKLIALSCDNVADHKEWSEDVKCLSGVKGD-----MPYPIIADETRELAVKLGMVDPDE 117
Query: 176 GHS------LRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGW 229
S R +FII + ++ L GR+ E LR++ + Q T + A P+ W
Sbjct: 118 RTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSLQLTAQKKVATPADW 177
Query: 230 QPGQRTI---SNREEDEKE 245
QPG R + E+ K
Sbjct: 178 QPGDRCMVVPGVSAEEAKT 196
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A Length = 249 | Back alignment and structure |
|---|
Score = 241 bits (616), Expect = 2e-80
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 16/197 (8%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG 116
+ P + T G IK +GK+ V F +P DFT VC TE ++ + ++F ++G
Sbjct: 9 ERFPEMEVTTDH-GVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG 67
Query: 117 AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG 176
+++G+SVDS F+H W +++ + ++ P+++D ++R G+ +
Sbjct: 68 VDLIGLSVDSVFSHIKWKEWIERHIGV-------RIPFPIIADPQGTVARRLGLLHAESA 120
Query: 177 -HSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQP---- 231
H++RG+FI+D G++R + + +GR V+E LR+V+A + D A P+ W
Sbjct: 121 THTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNEII 180
Query: 232 GQRTI---SNREEDEKE 245
G+ I E+ +
Sbjct: 181 GEGLIVPPPTTEDQARA 197
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A Length = 160 | Back alignment and structure |
|---|
Score = 204 bits (520), Expect = 4e-67
Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 19/165 (11%)
Query: 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRG-KYLVFFFYPLDFTFVCPTEVLALNEKIDEFH 113
V AP + + D N + + L YRG K ++ F+PL FT +C E+ L + + EF
Sbjct: 11 VGATAPDFT---LRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFE 67
Query: 114 KIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL--THEISRDYGVY 171
+ + +SV TH+ W PLLSD +S+ YGV+
Sbjct: 68 NDDSAALAISVGPPPTHKIWATQ-------------SGFTFPLLSDFWPHGAVSQAYGVF 114
Query: 172 LEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216
E G + RG F++DR GI+R + R + A
Sbjct: 115 NEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT 159
|
| >2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Sulfolobus tokodaii} PDB: 3hjp_A Length = 157 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 1e-40
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 19/152 (12%)
Query: 69 DGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128
D +K++KL+ +GK +V FYP FT VC E+ + + +F+++ A V+G+SVD F
Sbjct: 17 DTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPF 76
Query: 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGH-----SLRGLF 183
+++A+ + + L +LSD E+ + Y V E + R +F
Sbjct: 77 SNKAFK---EHNK----------LNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVF 123
Query: 184 IIDREGIVRQITLNDLPVGRS-VEETLRLVRA 214
+ID+EG VR ++D P +E ++V++
Sbjct: 124 VIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKS 155
|
| >2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant enzyme, reactive oxygen species, thioredoxin fold, structural genomics; 2.30A {Aeropyrum pernix} SCOP: c.47.1.10 PDB: 2cx3_A Length = 164 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 1e-37
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 20/155 (12%)
Query: 69 DGNIKEIKLTDY--RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
+ + + + L + RG+ V F+P F+ VC E+ +K+ + K AEV+ +SVDS
Sbjct: 18 NQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDS 77
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGH----SLRGL 182
+ + + ++ L LLSD E+ + Y VY ED + R +
Sbjct: 78 PWCLKKFK---DENR----------LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAV 124
Query: 183 FIIDREGIVRQITLNDLPVGRS-VEETLRLVRAFQ 216
FI+ +G V + D P+ +E +R
Sbjct: 125 FIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA 159
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 Length = 163 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-32
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
+ ++ + L D+ GK V P T +C T+ NE++ V+ VS+D
Sbjct: 27 LTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLTVSMDL 84
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL-THEISRDYGVYLEDKGHSLRGLFII 185
F + W + DN +LSD H RDY + + + R +F++
Sbjct: 85 PFAQKRWCGAEGLDN------------AIMLSDYFDHSFGRDYALLINEWHLLARAVFVL 132
Query: 186 DREGIVR 192
D + +R
Sbjct: 133 DTDNTIR 139
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} Length = 166 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 7e-31
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 16/127 (12%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
V+D ++ ++ L DY GK + P T VC + N + K V+ +S D
Sbjct: 31 VLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFN---SDASKEEGIVLTISADL 87
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTH-EISRDYGVYLEDKGHSLRGLFII 185
F + W S DN + LSD +YGV +E+ R +F++
Sbjct: 88 PFAQKRWCASAGLDN------------VITLSDHRDLSFGENYGVVMEELRLLARAVFVL 135
Query: 186 DREGIVR 192
D + V
Sbjct: 136 DADNKVV 142
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} Length = 171 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 1e-30
Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 17/129 (13%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
VV +++E + + V P T VC TE NE + G +V VS+D
Sbjct: 32 VVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGME--GVDVTVVSMDL 89
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLED---KGHSLRGLF 183
F + + S N + + SD + YGV + + KG R +F
Sbjct: 90 PFAQKRFCESFNIQN------------VTVASDFRYRDMEKYGVLIGEGALKGILARAVF 137
Query: 184 IIDREGIVR 192
IID+EG V
Sbjct: 138 IIDKEGKVA 146
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A Length = 175 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-28
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
+ G++ I +RGK ++ +P T VC T V +E+ GA V+ VS D
Sbjct: 29 LTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAAS---GATVLCVSKDL 85
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLED---KGHSLRGLF 183
F + + + +N + S DYGV + D G R +
Sbjct: 86 PFAQKRFCGAEGTEN------------VMPASAFRDSFGEDYGVTIADGPMAGLLARAIV 133
Query: 184 IIDREGIVR 192
+I +G V
Sbjct: 134 VIGADGNVA 142
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A Length = 167 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 3e-28
Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 15/127 (11%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
V+ +++E L D +GK + P T VC + NE+ + V +S D
Sbjct: 29 VLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLG--DVNVYTISADL 86
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL-THEISRDYGVYLEDKGHSLRGLFII 185
F W + D + LSD +GVY+++ R +F++
Sbjct: 87 PFAQARWCGANGIDK------------VETLSDHRDMSFGEAFGVYIKELRLLARSVFVL 134
Query: 186 DREGIVR 192
D G V
Sbjct: 135 DENGKVV 141
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A Length = 200 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-27
Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 18/130 (13%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
+V ++ ++ L+ + GK V +P T VC V N+ E V+ +S D
Sbjct: 63 LVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGELE--NTVVLCISSDL 120
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL-THEISRDYGVYLED---KGHSLRGL 182
F + + N + LS L + + YGV + + G + R +
Sbjct: 121 PFAQSRFCGAEGLSN------------VITLSTLRGADFKQAYGVAITEGPLAGLTARAV 168
Query: 183 FIIDREGIVR 192
++D + V
Sbjct: 169 VVLDGQDNVI 178
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 Length = 165 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 3e-27
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 18/130 (13%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
+V ++ ++ L D+ K V +P T VC T V N++ + V+ +S D
Sbjct: 28 LVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISADL 85
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL-THEISRDYGVYLED---KGHSLRGL 182
F + + +N +S H + GV ++ G + R +
Sbjct: 86 PFAQARFCGAEGIEN------------AKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAV 133
Query: 183 FIIDREGIVR 192
++D + V
Sbjct: 134 IVLDEQNNVL 143
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} Length = 161 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-26
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 16/149 (10%)
Query: 69 DGNIKEIKLTDYRGKY-LVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127
N ++I L+DY GK+ +V +FYP D T E A + D V+GVS D
Sbjct: 15 ADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDI 74
Query: 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDR 187
+H+ + +K L L+SD +I YG R F+ID+
Sbjct: 75 NSHKRFK---EKYK----------LPFILVSDPDKKIRELYGAK-GFIL-PARITFVIDK 119
Query: 188 EGIVRQITLNDLPVGRSVEETLRLVRAFQ 216
+GI+R I + + V E L+ ++ +
Sbjct: 120 KGIIRHIYNSQMNPANHVNEALKALKQIK 148
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A Length = 163 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 3e-24
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 73 KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132
+ L + G +LV +FYP D T TE L N + EF K GA+++GVS DS +H
Sbjct: 26 TQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDN 85
Query: 133 WINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK--GHSLRGL----FIID 186
+ K+ PL+SD + R + V E G + G+ F++
Sbjct: 86 FCA--KQG-----------FAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLS 132
Query: 187 REGIVRQI 194
EG V Q
Sbjct: 133 PEGQVVQA 140
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} Length = 179 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 9e-24
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 19/128 (14%)
Query: 73 KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132
L+DY ++LV +FYP D T TE L N + +F +I A V+GVS DS +H +
Sbjct: 42 TCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDS 101
Query: 133 WINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK--GHSLRGL----FIID 186
+ PL+SD + + + V E G + G+ F+I
Sbjct: 102 FCAKQ-------------GFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIG 148
Query: 187 REGIVRQI 194
+ +
Sbjct: 149 PTHRIVEA 156
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} Length = 224 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 2e-23
Identities = 26/186 (13%), Positives = 57/186 (30%), Gaps = 28/186 (15%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
+VD + L + + +L + +++ ++VDS
Sbjct: 33 LVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDSWPHLKLIVITVDS 92
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL-THEISRDYGVYLED---KGHSLRGL 182
+ + N I LLS L + + YGV + + G++ +
Sbjct: 93 PSSLARARHEHGLPN------------IALLSTLRGRDFHKRYGVLITEYPLSGYTSPAI 140
Query: 183 FIIDREGIVR--QIT--LNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPGQRTISN 238
+ D +V + D ++E+ L+ +A + + +
Sbjct: 141 ILADAANVVHYSERLANTRDFFDFDAIEKLLQEGEQ--------QAMAAEREAAEARQEQ 192
Query: 239 REEDEK 244
E EK
Sbjct: 193 DAEREK 198
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 Length = 159 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 1e-16
Identities = 34/149 (22%), Positives = 53/149 (35%), Gaps = 20/149 (13%)
Query: 73 KEIKLTDY--RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTH 130
I L + +VFF YP T + + E + A V G+S DS +
Sbjct: 24 DSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAA-VFGLSADSVTSQ 82
Query: 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGI 190
+ + + K N L LLSD E G S+R FI +G
Sbjct: 83 KKFQS---KQN----------LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFV-DGK 128
Query: 191 VRQITLNDLP---VGRSVEETLRLVRAFQ 216
++ + P V + +E L + F+
Sbjct: 129 LKFKRVKISPEVSVNDAKKEVLEVAEKFK 157
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 9e-15
Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 33/172 (19%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFV----CPTEVLALNEKIDEF 112
AP G + G + L D++GKY++ +DF F C E L + + F
Sbjct: 7 SVAPAITGIDL-KG--NSVSLNDFKGKYVL-----VDFWFAGCSWCRKETPYLLKTYNAF 58
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYL 172
G + GVS D W ++++D ++ L D ++ Y +
Sbjct: 59 KDKGFTIYGVSTDR--REEDWKKAIEEDK-------SYWNQVLLQKDDVKDVLESYCI-- 107
Query: 173 EDKGHSLRGL---FIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEH 221
G ++D EG + L + +VE+ + + + H
Sbjct: 108 -------VGFPHIILVDPEGKIVAKELRGDDLYNTVEKFVNGAKEGHHHHHH 152
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 6e-13
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 40/163 (24%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCP---TEVLALNEKIDE 111
AP + G +KL+D G + LDF ++ C +N+ +
Sbjct: 7 DKAPDFALPGK-TG---VVKLSDKTGSVVY-----LDFWASW-CGPCRQSFPWMNQMQAK 56
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVY 171
+ G +VV V++D+ + L + + + D + R YGV
Sbjct: 57 YKAKGFQVVAVNLDA--KTGDAMKFLAQV----------PAEFTVAFDPKGQTPRLYGV- 103
Query: 172 LEDKGHSLRGL---FIIDREGIVRQITLNDLPV-GRSVEETLR 210
+G+ F+IDR G V + P ++E+ +
Sbjct: 104 --------KGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQIL 138
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-12
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 32/146 (21%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTF----VCPTEVLALNEKIDEF 112
+ AP + T DG K++ L+ RGK ++ L FT VC E+ + + I
Sbjct: 11 EMAPDFTITLT-DG--KQVTLSSLRGKVVM-----LQFTASWCGVCRKEMPFIEKDIWLK 62
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYL 172
HK A+ + +D + K + PL D +I Y +
Sbjct: 63 HKDNADFALIGIDRDEPLEKVLAFAKS----------TGVTYPLGLDPGADIFAKYALR- 111
Query: 173 EDKGHSLRGL---FIIDREGIVRQIT 195
G+ +IDREG + ++T
Sbjct: 112 ------DAGITRNVLIDREGKIVKLT 131
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 9e-12
Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 38/146 (26%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCP---TEVLALNEKIDE 111
AP + +G K I+L+D +GK + L+F T+ C E + +
Sbjct: 4 SDAPNFVLEDT-NG--KRIELSDLKGKGVF-----LNFWGTW-CEPCKKEFPYMANQYKH 54
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVY 171
F G E+V V+V + A N +K + P++ D ++ Y V
Sbjct: 55 FKSQGVEIVAVNVGE--SKIAVHNFMKSYG----------VNFPVVLDTDRQVLDAYDV- 101
Query: 172 LEDKGHSLRGL---FIIDREGIVRQI 194
L F+I+ EG V ++
Sbjct: 102 --------SPLPTTFLINPEGKVVKV 119
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 2e-11
Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 37/152 (24%)
Query: 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCP---TEVLALNE 107
A + + +G K + L D +GKY+ +D T+ C E+ AL E
Sbjct: 4 RSGNPSAASFSYPDI-NG--KTVSLADLKGKYIY-----IDVWATW-CGPCRGELPALKE 54
Query: 108 KIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRD 167
+++ V +S D +AW N + KD I L
Sbjct: 55 LEEKYAGKDIHFVSLSCDK--NKKAWENMVTKDQ---------LKGIQLHMGTDRTFMDA 103
Query: 168 YGVYLEDKGHSLRGL---FIIDREGIVRQITL 196
Y + G+ ++DR+G + +
Sbjct: 104 YLI---------NGIPRFILLDRDGKIISANM 126
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 6e-11
Identities = 20/150 (13%), Positives = 51/150 (34%), Gaps = 37/150 (24%)
Query: 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCPT---EVLALNE 107
++ K AP + + G K + D +GK + ++F CP E+ + +
Sbjct: 2 SLDSKTAPAFSLPDL-HG--KTVSNADLQGKVTL-----INFWFPS-CPGCVSEMPKIIK 52
Query: 108 KIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRD 167
+++ +V+ V+ + +K L ++ D + +
Sbjct: 53 TANDYKNKNFQVLAVAQP-IDPIESVRQYVKDYG----------LPFTVMYDADKAVGQA 101
Query: 168 YGVYLEDKGHSLRGL---FIIDREGIVRQI 194
+G + +I ++G + +
Sbjct: 102 FGT---------QVYPTSVLIGKKGEILKT 122
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 6e-11
Identities = 22/165 (13%), Positives = 52/165 (31%), Gaps = 33/165 (20%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFY-----PLDFTFVCPTEVLALNEKIDE 111
K AP T G L D + KY + FF+ C E L + +
Sbjct: 9 KKAPNLYMTDT-TG--TYRYLYDVQAKYTILFFWDSQCGH------CQQETPKLYDWWLK 59
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTH--EISRDYG 169
G +V +++ W+ ++ + D + + Y
Sbjct: 60 NRAKGIQVYAANIER--KDEEWLKFIRSKK---------IGGWLNVRDSKNHTDFKITYD 108
Query: 170 VYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214
+Y + L+++D+ ++ + + + + + ++
Sbjct: 109 IY------ATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSLKT 147
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 8e-11
Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 39/161 (24%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTF----VCPTEVLALNEKIDEF 112
+ + G LTD +GK ++ +DFT + LAL E +++
Sbjct: 13 ASIIDIQLKDL-KG--NTRSLTDLKGKVVL-----IDFTVYNNAMSAAHNLALRELYNKY 64
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT---HEISRDYG 169
G E+ +S+D W S D L + D Y
Sbjct: 65 ASQGFEIYQISLDG--DEHFWKTS------------ADNLPWVCVRDANGAYSSYISLYN 110
Query: 170 VYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLR 210
V +L +F+++R + N + ++E ++
Sbjct: 111 V------TNLPSVFLVNRNNELSARGEN----IKDLDEAIK 141
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-10
Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 41/146 (28%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCP---TEVLALNEKIDE 111
AP + + + L YRGK ++ ++F ++ CP E+ +++ +
Sbjct: 19 ALAP---NFKLPTLSGENKSLAQYRGKIVL-----VNFWASW-CPYCRDEMPSMDRLVKS 69
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVY 171
F K V+ V+V+ + + ++ + LSD T ++ + YG
Sbjct: 70 FPKGDLVVLAVNVE-----KRFPEKYRRAP----------VSFNFLSDATGQVQQRYGA- 113
Query: 172 LEDKGHSLRGL---FIIDREGIVRQI 194
L FI+DR+GI+RQ
Sbjct: 114 --------NRLPDTFIVDRKGIIRQR 131
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 8e-10
Identities = 25/176 (14%), Positives = 53/176 (30%), Gaps = 40/176 (22%)
Query: 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCP---TEVLALNEKI 109
V++ + T + DG + I L + G ++ L F + CP L+
Sbjct: 13 VLEREASFSLTTI-DG--EVISLNNVGGDVVI-----LWFMAAW-CPSCVYMADLLDRLT 63
Query: 110 DEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLD--------KLKIPLLSDLT 161
+++ +I V+ + + L K D ++
Sbjct: 64 EKYREI--SVIAIDFWT--AEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDD 119
Query: 162 HEISRDYGVYLEDKGHSLRGL---FIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214
+ + V R + I+D+ V P +E ++ V+
Sbjct: 120 GSLVEKFNV---------RSIDYIVIMDKSSNVLYAGTT--PSLGELESVIKSVQG 164
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 8e-10
Identities = 20/149 (13%), Positives = 44/149 (29%), Gaps = 33/149 (22%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFT----FVCPTEVLALNEKIDEF 112
AP + D + G+Y + L+F + L ++++F
Sbjct: 11 DLAPRIEFLGN-DAKAS---FHNQLGRYTL-----LNFWAAYDAESRARNVQLANEVNKF 61
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYL 172
+ +S+D ++K D + E+ + Y +
Sbjct: 62 GPDKIAMCSISMDE--------KESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDL-- 111
Query: 173 EDKGHSLRGL---FIIDREGIVRQITLND 198
R F+I+ EG++ +
Sbjct: 112 -------RKGFKNFLINDEGVIIAANVTP 133
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 8e-10
Identities = 32/180 (17%), Positives = 64/180 (35%), Gaps = 46/180 (25%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCPT---EVLALNEKIDE 111
PAP + N + +KL+D +G+ ++ ++F T+ CP E+ ++
Sbjct: 6 NPAP---DFTLNTLNGEVVKLSDLKGQVVI-----VNFWATW-CPPCREEIPSMMRLNAA 56
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKI--PLLSDLTHEISRDYG 169
++ VS+D + + + K P+L D + + YG
Sbjct: 57 MAGKPFRMLCVSID-------------EGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYG 103
Query: 170 VYLEDKGHSLRGL---FIIDREGIVRQ-----ITLNDLPVGRSVEETLRLVRAFQYTDEH 221
G+ F+IDR G++ + + + V + L R + H
Sbjct: 104 T---------TGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSKAREGHHHHHH 154
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-09
Identities = 31/165 (18%), Positives = 54/165 (32%), Gaps = 42/165 (25%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFT----FVCPTEVLALNEKIDEF 112
K APY+ G +R +YL+ L+F P L E+
Sbjct: 9 KSAPYFSLPNE-KGEKLSRSAERFRNRYLL-----LNFWASWCDPQPEANAELKRLNKEY 62
Query: 113 HK-IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT---HEISRDY 168
K ++G+S+D AW ++KKD L + D T E ++ Y
Sbjct: 63 KKNKNFAMLGISLDI--DREAWETAIKKDT----------LSWDQVCDFTGLSSETAKQY 110
Query: 169 GVYLEDKGHSLRGL---FIIDREGIVRQITLNDLPVGRSVEETLR 210
+ L ++ G + + G ++ L+
Sbjct: 111 AI---------LTLPTNILLSPTGKILARDIQ----GEALTGKLK 142
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 3e-09
Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 30/130 (23%)
Query: 73 KEIKLTDYRGKYLVFFFYPLDF--TFVCP---TEVLALNEKIDEFHKIGAEVVGVSVDSH 127
K +L+DY+GK + L F ++ C + +E E + VS
Sbjct: 13 KTYRLSDYKGKKVY-----LKFWASW-CSICLASLPDTDEIAKEAGDDYVVLTVVSPGH- 65
Query: 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGL---FI 184
K LD +P+L D + ++ YGV R
Sbjct: 66 -KGEQSEADFK-----NWYKGLDYKNLPVLVDPSGKLLETYGV---------RSYPTQAF 110
Query: 185 IDREGIVRQI 194
ID+EG + +
Sbjct: 111 IDKEGKLVKT 120
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-08
Identities = 18/154 (11%), Positives = 50/154 (32%), Gaps = 34/154 (22%)
Query: 69 DGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCP---TEVLALNEKIDEFHKIGAEVVGVS 123
D L + + ++ T+ C E+ A+++ K ++VG++
Sbjct: 13 DN--TPQSLQSLKAPVRI-----VNLWATW-CGPCRKEMPAMSKWYKAQKKGSVDMVGIA 64
Query: 124 VDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGL- 182
+D+ ++ + P+ Y G+++ L
Sbjct: 65 LDTSDNIGNFLKQT-------------PVSYPIWRYTGANSRNFMKTY----GNTVGVLP 107
Query: 183 --FIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214
+ + RQ ++ +S+ + ++L +
Sbjct: 108 FTVVEAPKCGYRQTITGEVN-EKSLTDAVKLAHS 140
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 2e-08
Identities = 19/150 (12%), Positives = 49/150 (32%), Gaps = 32/150 (21%)
Query: 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCPT---EVLALNE 107
P + + + + + K + + F ++ CP E+ +
Sbjct: 12 GTATVPHTMS---TMKTADNRPASVYLKKDKPTL-----IKFWASW-CPLCLSELGQAEK 62
Query: 108 KIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRD 167
+ A ++ V+ + K K L+ K+P+++D I+++
Sbjct: 63 WAQDAKFSSANLITVASPGFLHEK------KDGEFQKWYAGLNYPKLPVVTDNGGTIAQN 116
Query: 168 YGVYLEDKGHSLRGL---FIIDREGIVRQI 194
+ +I ++G V++I
Sbjct: 117 LNI---------SVYPSWALIGKDGDVQRI 137
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-08
Identities = 23/165 (13%), Positives = 40/165 (24%), Gaps = 49/165 (29%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCPT------EVLALNEK 108
+ T + G +GK V L F + CP + +
Sbjct: 2 DERLQFTATTL-SG--APFDGASLQGKPAV-----LWFWTPW-CPFCNAEAPSLSQVAAA 52
Query: 109 IDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDY 168
VG++ + A + + K N L L+D I Y
Sbjct: 53 NPAV-----TFVGIATRA--DVGAMQSFVSKYN----------LNFTNLNDADGVIWARY 95
Query: 169 GVYLEDKGHSLRGL---FIIDREGIVRQITLNDLPVGRSVEETLR 210
V +G + + P ++ L
Sbjct: 96 NV---------PWQPAFVFYRADGTSTFV---NNPTAAMSQDELS 128
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-08
Identities = 24/136 (17%), Positives = 36/136 (26%), Gaps = 38/136 (27%)
Query: 68 VDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCPT---EVLALNEKIDEFHKIGAEVVGV 122
+DG + GK V L F + CPT E + + EV V
Sbjct: 13 LDG--HDFHGESLLGKPAV-----LWFWAPW-CPTCQGE----APVVGQVAASHPEVTFV 60
Query: 123 SVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGL 182
V A + K L+D + ++GV
Sbjct: 61 GVAGLDQVPAMQEFVNKYP---------VKTFTQLADTDGSVWANFGVT---------QQ 102
Query: 183 ---FIIDREGIVRQIT 195
+D G V +
Sbjct: 103 PAYAFVDPHGNVDVVR 118
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 3e-08
Identities = 23/153 (15%), Positives = 57/153 (37%), Gaps = 40/153 (26%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTD--YRGKYLVFFFYPLDF--TFVCP-----TEVLALNE 107
K AP++ G ++I + ++ K L+ ++F ++ L E
Sbjct: 9 KYAPFFSLPNA-KG--EKITRSSDAFKQKSLL-----INFWASW-NDSISQKQSNSELRE 59
Query: 108 KIDEFHK-IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT---HE 163
++ K ++G+S+D + W +++K+D L + D E
Sbjct: 60 IYKKYKKNKYIGMLGISLDV--DKQQWKDAIKRDT----------LDWEQVCDFGGLNSE 107
Query: 164 ISRDYGVYLEDKGHSLRGLFIIDREGIVRQITL 196
+++ Y + + + ++ +G + L
Sbjct: 108 VAKQYSI------YKIPANILLSSDGKILAKNL 134
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 5e-08
Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 38/147 (25%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCP---TEVLALNEKIDE 111
P A D + K KL+D+RGK L+ ++ T+ C E+ AL+E +
Sbjct: 38 LKLP---DLAFEDADGKPKKLSDFRGKTLL-----VNLWATW-CVPCRKEMPALDELQGK 88
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKI---PLLSDLTHEISRDY 168
EVV +++D + K L + + +D ++ +D
Sbjct: 89 LSGPNFEVVAINID-------------TRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDL 135
Query: 169 GVYLEDKGHSLRGL---FIIDREGIVR 192
G+ ++D +G
Sbjct: 136 KAIGR-----ALGMPTSVLVDPQGCEI 157
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 8e-08
Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 38/158 (24%)
Query: 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCP---TEVL-ALNE 107
+++ P V+ + + D RGK +V F +CP + +
Sbjct: 2 SSLDNAPLLELDVQEWVNH--EGLSNEDLRGKVVVVEV----FQMLCPGCVNHGVPQAQK 55
Query: 108 KIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKI--PLLSDLTHE-- 163
+ +V+G+ +LK +D+ I P+ D+ E
Sbjct: 56 IHRMIDESQVQVIGLHSVFEHHDVMTPEALKVF--------IDEFGIKFPVAVDMPREGQ 107
Query: 164 ----ISRDYGVYLEDKGHSLRGL---FIIDREGIVRQI 194
+ Y + G + DR+G +RQ+
Sbjct: 108 RIPSTMKKYRL---------EGTPSIILADRKGRIRQV 136
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 9e-08
Identities = 13/147 (8%), Positives = 35/147 (23%), Gaps = 38/147 (25%)
Query: 73 KEIKLTDYRGKYLVFFFY-----PLDFTFVCPTEVLALNEKI---DEFHKIGAEVVGVSV 124
+++ + +Y + FFY C E + V+ +
Sbjct: 18 DNSRMSRLKAQYTMLFFYDPDCSN------CRKFEKLFAEIPAFVEMVENGTLRVLAIYP 71
Query: 125 DSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHE--ISRDYGVYLEDKGHSLRGL 182
D W + + + + Y + + +
Sbjct: 72 DE--NREEWATKAVY----------MPQGWIVGWNKAGDIRTRQLYDI------RATPTI 113
Query: 183 FIIDREGIVRQITLNDLPVGRSVEETL 209
+++D V + + + L
Sbjct: 114 YLLDGRKRVILKDTS----MEQLIDYL 136
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 9e-08
Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 28/129 (21%)
Query: 73 KEIKLTDYRGKYLVFFFYPLDF-TFVCPT---EVLALNEKIDEFHKIGAEVVGVSVDSHF 128
K I L RGK ++ +DF + C + + + G V+GV +
Sbjct: 73 KPIDLKSLRGKVVL-----IDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPE-Y 126
Query: 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGL---FII 185
++ K + P+ D + +Y R ++I
Sbjct: 127 AFEKVPGNVAK--GAANLG----ISYPIALDNNYATWTNYRN---------RYWPAEYLI 171
Query: 186 DREGIVRQI 194
D G VR I
Sbjct: 172 DATGTVRHI 180
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-07
Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 48/167 (28%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCPT---EVLALNEKIDE 111
PAP + G V DG K +GK + ++F T+ CP E+ + +
Sbjct: 12 TPAPSFSGVTV-DG--KPFSSASLKGKAYI-----VNFFATW-CPPCRSEIPDMVQVQKT 62
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD-----LTHEISR 166
+ G VG++V+ N +K + P++
Sbjct: 63 WASRGFTFVGIAVNE--QLPNVKNYMKTQG----------IIYPVMMATPELIRAFNGYI 110
Query: 167 DYGVYLEDKGHSLRGL---FIIDREGIVRQITLNDLPVGRSVEETLR 210
D G+ G+ F+ID G V + VG +
Sbjct: 111 DGGI---------TGIPTSFVIDASGNVSGVI-----VGPRSKADFD 143
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 1e-07
Identities = 28/152 (18%), Positives = 46/152 (30%), Gaps = 36/152 (23%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCP---TEVL-ALNEKIDEF 112
AP + + ++ L D RGK +V F +CP + + F
Sbjct: 4 MKAPELQIQQWFNSA-TDLTLADLRGKVIVIEA----FQMLCPGCVMHGIPLAQKVRAAF 58
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKI--PLLSD-----LTHEIS 165
+ V+G+ SLK L + +I P+ D
Sbjct: 59 PEDKVAVLGLHTVFEHHEAMTPISLK--------AFLHEYRIKFPVGVDQPGDGAMPRTM 110
Query: 166 RDYGVYLEDKGHSLRGL---FIIDREGIVRQI 194
Y + RG +ID+ G +R
Sbjct: 111 AAYQM---------RGTPSLLLIDKAGDLRAH 133
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 21/146 (14%), Positives = 55/146 (37%), Gaps = 36/146 (24%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCPT---EVLALNEKIDE 111
+ + +G ++I + + +G+ + L F ++ CP E+ D
Sbjct: 13 AVPAVFLMKTI-EG--EDISIPN-KGQKTI-----LHFWTSW-CPPCKKELPQFQSFYDA 62
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVY 171
++V V++ + ++ + K N KL P++ D E+ ++Y +
Sbjct: 63 HPSDSVKLVTVNLVNSEQNQQVVEDFIKAN---------KLTFPIVLDSKGELMKEYHI- 112
Query: 172 LEDKGHSLRGL---FIIDREGIVRQI 194
+ F+++ +G + +
Sbjct: 113 --------ITIPTSFLLNEKGEIEKT 130
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-07
Identities = 19/155 (12%), Positives = 38/155 (24%), Gaps = 39/155 (25%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFY-----PLDFTFVCPTEVLALNEKI-- 109
A + T G + L + +Y + F C + L
Sbjct: 9 TKALNFTYTLD-SG--VKGTLYQFPAEYTLLFINNPGCHA------CAEMIEGLKASPVI 59
Query: 110 -DEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI--SR 166
+V+ + D W + D I
Sbjct: 60 NGFTAAKKLKVLSIYPDE--ELDEWKKHRND----------FAKEWTNGYDKELVIKNKN 107
Query: 167 DYGVYLEDKGHSLRGLFIIDREGIV--RQITLNDL 199
Y + ++ L+++D+ V + TL +
Sbjct: 108 LYDL------RAIPTLYLLDKNKTVLLKDATLQKV 136
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 4e-07
Identities = 25/162 (15%), Positives = 48/162 (29%), Gaps = 39/162 (24%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFY-----PLDFTFVCPTEVLALNEKIDEFH-KIGAEVV 120
V+ G +I L GK + F+F P L + K EV+
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPP------SRAFTPQLIDFYKAHAEKKNFEVM 66
Query: 121 GVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT--HEISRDYGVYLEDKGHS 178
+S D + + + K D ++ + V S
Sbjct: 67 LISWDE--SAEDFKDYYAK----------MPWLALPFEDRKGMEFLTTGFDV------KS 108
Query: 179 LRGLFIIDRE-GIVRQITLNDLPVGRSVEETLRLVRAFQYTD 219
+ L ++ + G + IT R++ + F + +
Sbjct: 109 IPTLVGVEADSGNI--ITTQ----ARTMVVKDPEAKDFPWPN 144
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-07
Identities = 20/154 (12%), Positives = 49/154 (31%), Gaps = 38/154 (24%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCP---TEVLALNEKIDE 111
+ P G ++ +I L+D+ + ++ L+ + C +E L +E
Sbjct: 35 QQLPDIGGDSL-MEEGTQINLSDFENQVVI-----LNAWGQW-CAPCRSESDDLQIIHEE 87
Query: 112 FHKIGA------EVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEIS 165
G V+G++V + + + + + L P + D +
Sbjct: 88 LQAAGNGDTPGGTVLGINVRDY-SRDIAQDFVTDNG----------LDYPSIYDPPFMTA 136
Query: 166 RDYGVYLEDKGHSLRGL---FIIDREGIVRQITL 196
G + ++D++ + L
Sbjct: 137 ASLGGV------PASVIPTTIVLDKQHRPAAVFL 164
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-07
Identities = 32/174 (18%), Positives = 54/174 (31%), Gaps = 46/174 (26%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFY-----PLDFTFVCPTEVLALNEKIDE 111
K P G + E+++ GK + F+F P L E D+
Sbjct: 6 KYLP---GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPP------ARGFTPQLIEFYDK 56
Query: 112 FHK-IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIP-LLSDLTHEISRDYG 169
FH+ EVV + D + K + L +P S+ ++S+ +
Sbjct: 57 FHESKNFEVVFCTWDE--EEDGFAGYFAK---------MPWLAVPFAQSEAVQKLSKHFN 105
Query: 170 VYLEDKGHSLRG---LFIIDRE-GIVRQITLNDLPVGRSVEETLRLVRAFQYTD 219
V L +D + G V +T R+ F + D
Sbjct: 106 V---------ESIPTLIGVDADSGDV--VTTR----ARATLVKDPEGEQFPWKD 144
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 6e-07
Identities = 30/174 (17%), Positives = 50/174 (28%), Gaps = 46/174 (26%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFY-----PLDFTFVCPTEVLALNEKIDE 111
K P G + E+ L GK + +F P C L E ++
Sbjct: 6 KYLP---GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPP------CRGFTPVLAEFYEK 56
Query: 112 FHK-IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPL-LSDLTHEISRDYG 169
H EVV +S D + + K + L +P E+ + +G
Sbjct: 57 HHVAKNFEVVLISWDE--NESDFHDYYGK---------MPWLALPFDQRSTVSELGKTFG 105
Query: 170 VYLEDKGHSLRG---LFIIDRE-GIVRQITLNDLPVGRSVEETLRLVRAFQYTD 219
V L I+ + G + I R+ F + +
Sbjct: 106 V---------ESIPTLITINADTGAI--IGTQ----ARTRVIEDPDGANFPWPN 144
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-06
Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 36/140 (25%)
Query: 64 GTAVVDGNIKEIKLTDY--RGKYLVFFFY-----PLDFTFVCPTEVLALNEKIDEFHKIG 116
G +V N E+ + + F+F P C L + E
Sbjct: 6 GIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPP------CRGFTPILADMYSELVDDS 59
Query: 117 A--EVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLED 174
A E++ VS D + + + + D L IP S ++ YG+
Sbjct: 60 APFEIIFVSSDR--SEDDMFQYMMESH-------GDWLAIPYRSGPASNVTAKYGI---- 106
Query: 175 KGHSLRG---LFIIDREGIV 191
G L I+ ++G +
Sbjct: 107 -----TGIPALVIVKKDGTL 121
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-06
Identities = 26/162 (16%), Positives = 48/162 (29%), Gaps = 37/162 (22%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFY-----PLDFTFVCPTEVLALNEKIDEFH-KIGAEVV 120
+ + GK + F+F P C L E ++ H E++
Sbjct: 33 KLRKQADTADMDSLSGKTVFFYFSASWCPP------CRGFTPQLVEFYEKHHDSKNFEII 86
Query: 121 GVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIP-LLSDLTHEISRDYGVYLEDKGHSL 179
S D + K + L IP ++ +++ Y V S+
Sbjct: 87 LASWDE--EEDDFNAYYAK---------MPWLSIPFANRNIVEALTKKYSV------ESI 129
Query: 180 RGLFIIDRE-GIVRQITLNDLPVGRSVEETLRLVRAFQYTDE 220
L ++ + G +T R + F + DE
Sbjct: 130 PTLIGLNADTGDT--VTTR----ARHALTQDPMGEQFPWRDE 165
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-06
Identities = 27/146 (18%), Positives = 46/146 (31%), Gaps = 41/146 (28%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFF----YPLDFTFVCPTEVLALNEKIDEF 112
+P P + G + + ++ F+ C E L+ +E
Sbjct: 9 EPLPDFLLLDP-KG--QPVTPATVSKPAVIVFWASWCTV------CKAEFPGLHRVAEET 59
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS---DLTHEISRDYG 169
G +S + T + +K IPLL+ D HE++ +
Sbjct: 60 ---GVPFYVISREPRDTREVVLEYMKTYP----------RFIPLLASDRDRPHEVAARFK 106
Query: 170 VYLEDKGHSLRGL---FIIDREGIVR 192
V G F++DREG V
Sbjct: 107 VL---------GQPWTFVVDREGKVV 123
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-06
Identities = 20/147 (13%), Positives = 46/147 (31%), Gaps = 34/147 (23%)
Query: 57 KPAPYWKG-TAVVDGNIKEIKLTDYRGKYLVFFFYPLDF-TFVCPT--EVLALNEKIDEF 112
+P P G A ++G + + K + + F + C E + + +
Sbjct: 5 QPMPELTGEKAWLNG--EVTREQLIGEKPTL-----IHFWSISCHLCKEAMPQVNEFRDK 57
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKI--PLLSDLTHEISRDYGV 170
++ VV V + +K+ + I P+ D H ++ +
Sbjct: 58 YQDQLNVVAVHMPR-SEDDLDPGKIKE--------TAAEHDITQPIFVDSDHALTDAFEN 108
Query: 171 YLEDKGHSLRGL---FIIDREGIVRQI 194
+ ++ D+ G +R
Sbjct: 109 ---------EYVPAYYVFDKTGQLRHF 126
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A Length = 170 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 7e-06
Identities = 21/140 (15%), Positives = 49/140 (35%), Gaps = 24/140 (17%)
Query: 68 VDGNIKEIKLTDYRGKYLVFFFYPLDFTF---VCPTEVLALNEKIDEFHKIGAEV--VGV 122
VD E +L + +GK ++ +T CP +L + I + G + +
Sbjct: 14 VDSYGNEFQLKNLKGKPIILSPI---YTHCRAACPLITKSLLKVIPKLGTPGKDFWVITF 70
Query: 123 SVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL----SDLTHEISRDYGVYLEDKG-- 176
+ D T + +K+ +K+ +D ++ S+ ++ G
Sbjct: 71 TFDPKDT----LEDIKR---FQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGND 123
Query: 177 --HSLRGLFIIDREGIVRQI 194
H + ++ E ++
Sbjct: 124 FIHPN-VVVVLSPELQIKDY 142
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-05
Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 32/184 (17%)
Query: 45 DHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLA 104
D W N K K T +++ ++ ++ +YR + +P + PT +L+
Sbjct: 339 DGLATWDN---WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AHI-PTILLS 393
Query: 105 L---NEKIDEFHKIGAEVVGVS-VDSH---FTHRAWINSLKKDNSLKKDNR-------LD 150
L + + + ++ S V+ T I S+ + +K +N +D
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--IPSIYLELKVKLENEYALHRSIVD 451
Query: 151 KLKIPL---LSDLTHEISRDYGV-YLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVE 206
IP DL Y ++ GH L+ + +R + R + L+ R +E
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHI---GHHLKNIEHPERMTLFRMVFLDF----RFLE 504
Query: 207 ETLR 210
+ +R
Sbjct: 505 QKIR 508
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A Length = 164 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 7e-05
Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 37/171 (21%)
Query: 68 VDGNIKEIKLTDYRGKYLVFFFYPLDFTF---VCPTEVLALNEKIDEFHKIGAE----VV 120
+ DY G++L+ +F FT VCP E+ + + +DE I +
Sbjct: 9 TTHTGERKTDKDYLGQWLLIYF---GFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPL 65
Query: 121 GVSVD-------------SHFTHR--AWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEIS 165
+S+D F+ + + ++ + + + R+ P D
Sbjct: 66 FISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDED------ 119
Query: 166 RDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216
Y+ D H+ +++I +G + G +R ++
Sbjct: 120 ---EDYIVD--HT-IIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYR 164
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} Length = 171 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 37/171 (21%)
Query: 68 VDGNIKEIKLTDYRGKYLVFFFYPLDFTF---VCPTEVLALNEKIDEFHKIGAE----VV 120
+D + D+RG++++ +F FT +CP E+ L + + + V
Sbjct: 12 LDHRGRARCKADFRGQWVLMYF---GFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPV 68
Query: 121 GVSVD-------------SHFTHR--AWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEIS 165
++VD F R S K+ R+ P D
Sbjct: 69 FITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDED------ 122
Query: 166 RDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216
Y+ D HS +++++ +G+ + + R + AF+
Sbjct: 123 ---QDYIVD--HS-IAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAFR 167
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A Length = 174 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 68 VDGNIKEIKLTDYRGKY-LVFFFYPLDFTF---VCPTEVLALNEKIDEFHKIGAEV--VG 121
+ + K + L +G+ L F FT +CP + + + +V +
Sbjct: 19 QNQDGKNVSLESLKGEVWLADFI----FTNCETICPPMTAHMTDLQKKLKAENIDVRIIS 74
Query: 122 VSVD 125
SVD
Sbjct: 75 FSVD 78
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A Length = 200 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 4e-04
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 68 VDGNIKEIKLTDYRGKYLVFFFYPLDFTF---VCPTEVLALNEKIDEFHKIGAE---VVG 121
D E + GK+ + +F F+ +CP E+ L ++ +
Sbjct: 27 EDMYGNEFTEKNLLGKFSIIYF---GFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLF 83
Query: 122 VSVD 125
++ D
Sbjct: 84 ITCD 87
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} Length = 172 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 5e-04
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 18/82 (21%)
Query: 59 APYWKGTAVVDGNIKEIKLTD---------YRGKYLVFFFYPLDFTF---VCPTEVLALN 106
+ GT +++ + L ++ K ++ FF FT VCPT +LAL
Sbjct: 3 MHTFYGTRLLNPKPVDFALEGPQGPVRLSQFQDKVVLLFF---GFTRCPDVCPTTLLALK 59
Query: 107 EKIDEFHKIGAE---VVGVSVD 125
++ E V+ VSVD
Sbjct: 60 RAYEKLPPKAQERVQVIFVSVD 81
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 247 | |||
| 3sbc_A | 216 | Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c | 100.0 | |
| 3tue_A | 219 | Tryparedoxin peroxidase; thioredoxin fold, peroxir | 100.0 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 100.0 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 100.0 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 100.0 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 100.0 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 100.0 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 100.0 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 100.0 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 100.0 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 100.0 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 100.0 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 100.0 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 100.0 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 100.0 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 100.0 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 100.0 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 100.0 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 100.0 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 100.0 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 100.0 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 100.0 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 99.97 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 99.97 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 99.97 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 99.97 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 99.97 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 99.97 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 99.97 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 99.96 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 99.96 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 99.96 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 99.96 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 99.96 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.96 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 99.96 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 99.96 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.96 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 99.95 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 99.95 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 99.95 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 99.95 | |
| 4f82_A | 176 | Thioredoxin reductase; structural genomics, niaid, | 99.94 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.94 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.94 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.94 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.94 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.94 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 99.94 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.94 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.94 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 99.94 | |
| 4eo3_A | 322 | Bacterioferritin comigratory protein/NADH dehydro; | 99.94 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.94 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.94 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.94 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.93 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.93 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.93 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.93 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 99.93 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.93 | |
| 2xhf_A | 171 | Peroxiredoxin 5; oxidoreductase, antioxidant enzym | 99.93 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.93 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 99.93 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 99.93 | |
| 1xiy_A | 182 | Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin | 99.93 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 99.93 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.93 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.93 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 99.93 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 99.93 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 99.92 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.92 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.92 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.92 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.92 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.92 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.92 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.92 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.92 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 99.92 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 99.92 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.91 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.91 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.91 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 99.91 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.91 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.91 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.91 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.91 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 99.84 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.91 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 99.9 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.9 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.9 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.89 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.88 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.88 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.88 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.88 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.87 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.85 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 99.75 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.62 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.6 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.58 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.55 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.5 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.46 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.43 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.42 | |
| 4h86_A | 199 | Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch | 99.41 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.41 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.4 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.39 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.38 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.35 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.35 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.35 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.34 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.32 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.32 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.31 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.31 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.31 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.31 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.31 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.31 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.3 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.3 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.3 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.3 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.3 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.29 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.29 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.29 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.29 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.28 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.28 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.28 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.28 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.28 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.27 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.27 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.26 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.26 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.26 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 98.91 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.26 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.25 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.25 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.25 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.25 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.24 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.24 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.24 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.24 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.24 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.24 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.23 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.22 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.22 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.21 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.2 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.2 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.19 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.19 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.19 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.19 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.18 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.18 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.18 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.17 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.17 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.16 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.16 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.16 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.15 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 99.13 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.13 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.12 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.12 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.09 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.09 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.07 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.06 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.05 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.04 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.04 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 99.02 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 99.01 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.0 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 99.0 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.97 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 98.95 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 98.94 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 98.93 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 98.45 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 98.91 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 98.89 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 98.88 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 98.85 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 98.84 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 98.82 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 98.82 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.81 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 98.77 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 98.76 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 98.73 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 98.71 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 98.67 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 98.67 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 98.65 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 98.64 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 98.63 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 98.63 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 98.61 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 98.56 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 98.56 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.48 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.48 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 98.46 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 98.31 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 98.27 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 98.18 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 98.16 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 98.16 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 98.13 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 98.13 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 98.11 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 98.03 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.02 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 97.98 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 97.97 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 97.9 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 97.86 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 97.8 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 97.79 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 97.77 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 97.65 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 97.26 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 97.25 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 97.18 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 97.07 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 97.06 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 97.03 | |
| 2ec4_A | 178 | FAS-associated factor 1; UAS domain, protein FAF1, | 96.98 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 96.94 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 96.93 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 96.88 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 96.82 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 96.75 | |
| 4dvc_A | 184 | Thiol:disulfide interchange protein DSBA; pilus as | 96.75 | |
| 3c1r_A | 118 | Glutaredoxin-1; oxidized form, oxidoreductase, cyt | 96.7 | |
| 3nzn_A | 103 | Glutaredoxin; structural genomics, PSI2, MCSG, pro | 96.7 | |
| 1un2_A | 197 | DSBA, thiol-disulfide interchange protein; disulfi | 96.7 | |
| 2lqo_A | 92 | Putative glutaredoxin RV3198.1/MT3292; TRX fold, o | 96.6 | |
| 3ic4_A | 92 | Glutaredoxin (GRX-1); structural genomics, PSI, MC | 96.46 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 96.27 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 96.21 | |
| 3h8q_A | 114 | Thioredoxin reductase 3; oxidoreductase, structura | 95.99 | |
| 3feu_A | 185 | Putative lipoprotein; alpha-beta structure, struct | 95.75 | |
| 3l9v_A | 189 | Putative thiol-disulfide isomerase or thioredoxin; | 95.74 | |
| 2klx_A | 89 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 95.7 | |
| 3qmx_A | 99 | Glutaredoxin A, glutaredoxin 3; electron transport | 95.67 | |
| 2yan_A | 105 | Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H | 95.16 | |
| 1fov_A | 82 | Glutaredoxin 3, GRX3; active site disulfide, CIS P | 95.06 | |
| 3ctg_A | 129 | Glutaredoxin-2; reduced form, electron transport, | 95.04 | |
| 3rhb_A | 113 | ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox | 95.02 | |
| 2khp_A | 92 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 94.7 | |
| 3msz_A | 89 | Glutaredoxin 1; alpha-beta sandwich, center for st | 94.68 | |
| 1wik_A | 109 | Thioredoxin-like protein 2; picot homology 2 domai | 94.46 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 94.29 | |
| 3l9s_A | 191 | Thiol:disulfide interchange protein; thioredoxin-f | 94.01 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 93.75 | |
| 3c7m_A | 195 | Thiol:disulfide interchange protein DSBA-like; red | 93.17 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 91.34 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 90.6 | |
| 3tdg_A | 273 | DSBG, putative uncharacterized protein; thioredoxi | 90.3 | |
| 3gx8_A | 121 | Monothiol glutaredoxin-5, mitochondrial; TRX fold, | 89.94 | |
| 1aba_A | 87 | Glutaredoxin; electron transport; HET: MES; 1.45A | 89.88 | |
| 3zyw_A | 111 | Glutaredoxin-3; metal binding protein; 1.84A {Homo | 89.23 | |
| 3l4n_A | 127 | Monothiol glutaredoxin-6; C-terminal domain of GRX | 88.28 | |
| 2wem_A | 118 | Glutaredoxin-related protein 5; chromosome 14 open | 88.2 | |
| 2wci_A | 135 | Glutaredoxin-4; redox-active center, iron-sulfur c | 87.67 | |
| 3ipz_A | 109 | Monothiol glutaredoxin-S14, chloroplastic; electro | 87.3 | |
| 3bci_A | 186 | Disulfide bond protein A; thiol-disulfide oxidored | 86.91 | |
| 2ct6_A | 111 | SH3 domain-binding glutamic acid-rich-like protein | 86.61 | |
| 3gn3_A | 182 | Putative protein-disulfide isomerase; MCSG, PSI, s | 86.03 | |
| 3gha_A | 202 | Disulfide bond formation protein D; BDBD, DSBA-lik | 85.24 | |
| 2axo_A | 270 | Hypothetical protein ATU2684; alpha beta protein., | 84.67 | |
| 1t1v_A | 93 | SH3BGRL3, SH3 domain-binding glutamic acid-rich pr | 82.54 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 82.09 | |
| 3f4s_A | 226 | Alpha-DSBA1, putative uncharacterized protein; thi | 82.0 | |
| 3gmf_A | 205 | Protein-disulfide isomerase; oxidoreductase, PSI-2 | 80.9 |
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=298.78 Aligned_cols=191 Identities=51% Similarity=0.880 Sum_probs=180.3
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhH
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTH 130 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~ 130 (247)
+.+++|+++|+|+++.+.|++|++++|++|+||++||+|||+.|||+|..|++.+++.+++|+++|+++|+||.|+.+++
T Consensus 21 M~~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds~~sh 100 (216)
T 3sbc_A 21 MVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSL 100 (216)
T ss_dssp -CCCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHH
T ss_pred chhhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCchhhH
Confidence 45789999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLR 210 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~ 210 (247)
.+|.++.+. ..++.+++||+++|+++++++.||+..++.|+..+++||||++|+|+++.+++.+.+++++|+|+
T Consensus 101 ~aw~~~~~~------~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr 174 (216)
T 3sbc_A 101 LAWTNIPRK------EGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALR 174 (216)
T ss_dssp HHHHTSCGG------GTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHH
T ss_pred HHHHHHHHH------hCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHH
Confidence 999987655 56666789999999999999999999888888999999999999999999999999999999999
Q ss_pred HHHhhhcccccCCccCCCCcCCCccccCCchhhhccC
Q psy15453 211 LVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKEEL 247 (247)
Q Consensus 211 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (247)
.|++||.++++++.||+||+||+++|.|.+++.+||+
T Consensus 175 ~l~AlQ~~~~~~~~~Pa~W~~G~~~i~p~~~~~~~~~ 211 (216)
T 3sbc_A 175 LVEAFQWTDKNGTVLPCNWTPGAATIKPTVEDSKEYF 211 (216)
T ss_dssp HHHHHHHHHHHCCBBCTTCCTTSCCBCCSTTTHHHHH
T ss_pred HHHHhhhHhhcCCCcCCCCCCCCceecCCHHHHHHHH
Confidence 9999999999999999999999999999999998873
|
| >3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=285.78 Aligned_cols=189 Identities=47% Similarity=0.910 Sum_probs=153.3
Q ss_pred cccccCCCCCCceeeee-ecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 51 TNAVVMKPAPYWKGTAV-VDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~-~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
...++|++||+|++.++ .|++|+.|+|++|+||++||+|||+.|||+|..|+..+++++++|+++|++||+||.|+.++
T Consensus 24 ~~~~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds~~s 103 (219)
T 3tue_A 24 GNAKINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYA 103 (219)
T ss_dssp CCCCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSCHHH
T ss_pred cccccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCchhh
Confidence 45789999999998653 38899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
+.+|.++... ..++.+++||+++|++++++++||+..+..|+..+.+||||++|+|+++++++...+++++|+|
T Consensus 104 h~~w~~~~~~------~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EvL 177 (219)
T 3tue_A 104 HLQWTLQDRK------KGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVL 177 (219)
T ss_dssp HHHHHHSCGG------GTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHH
T ss_pred HHHHhhhhHH------hcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCCCCHHHHH
Confidence 9999987544 4555578999999999999999999988888889999999999999999989999999999999
Q ss_pred HHHHhhhcccccCCccCCCCcCCCccccCCchhhhc
Q psy15453 210 RLVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKE 245 (247)
Q Consensus 210 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (247)
+.|++||.++++++.||+||+||+++|.+.+++.+|
T Consensus 178 r~l~aLQ~~~~~~~~~Pa~W~~G~~~i~p~~~~~~e 213 (219)
T 3tue_A 178 RLLEAFQFVEKHGEVCPANWKKGDPGMKPEPNASVE 213 (219)
T ss_dssp HHHHHHHHHHHC------------------------
T ss_pred HHHHHhhhHHhcCCCcCCCCCCCCccccCCCccchh
Confidence 999999999999999999999999999988876665
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=288.61 Aligned_cols=196 Identities=65% Similarity=1.161 Sum_probs=154.8
Q ss_pred ccccccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 46 HREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 46 ~~~~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
+......+.+|+++|+|+++++.|++|++++|++|+||++||+||+++||++|+.+++.|++++++|+++|++||+||.|
T Consensus 55 ~~~~~~~l~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D 134 (254)
T 3tjj_A 55 HSLHLSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVD 134 (254)
T ss_dssp ----CCCCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESS
T ss_pred ccccccccCCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 34455678999999999998878999999999999999999999999999999999999999999999899999999999
Q ss_pred ChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCH
Q psy15453 126 SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSV 205 (247)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~ 205 (247)
+.+...+|.+.+.+ +.++.+++|+++.|.++.+++.||+.....|..+|++||||++|+|++++.++...++++
T Consensus 135 ~~~~~~~~~~~~~~------~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~ 208 (254)
T 3tjj_A 135 SQFTHLAWINTPRR------QGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSV 208 (254)
T ss_dssp CHHHHHHHHTSCGG------GTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCH
T ss_pred CHHHHHHHHHHHHH------hcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCH
Confidence 99999999886644 555557899999999999999999987766777899999999999999998888888999
Q ss_pred HHHHHHHHhhhcccccCCccCCCCcCCCccccCCchhhhccC
Q psy15453 206 EETLRLVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKEEL 247 (247)
Q Consensus 206 ~~il~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (247)
+++++.|++++...++++.||++|.||+++|.+.+++.+||+
T Consensus 209 ~eil~~L~alq~~~~~~~~cp~~W~~g~~~~~~~~~~~~~~~ 250 (254)
T 3tjj_A 209 DETLRLVQAFQYTDKHGEVAPAGWKPGSETIIPDPAGKLKYF 250 (254)
T ss_dssp HHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHhhccccccCccccCCCCCCCceeccChhHHHHHh
Confidence 999999999999999999999999999999999999999985
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-41 Score=283.09 Aligned_cols=194 Identities=64% Similarity=1.146 Sum_probs=178.1
Q ss_pred ccccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 48 EGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 48 ~~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
.....+.+|+++|+|+++++.|++|++++|++|+||++||+||+++|||+|+.++|.|++++++|+++|++||+||.|+.
T Consensus 43 ~~~~~l~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~ 122 (240)
T 3qpm_A 43 LHLSKAKISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQ 122 (240)
T ss_dssp CEECSCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCH
T ss_pred cccCcCCCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 44567899999999999887799999999999999999999996699999999999999999999988999999999999
Q ss_pred HhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHH
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEE 207 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~ 207 (247)
+..++|.+.+.+ +.++.+++|+++.|+++.+++.||+.....|+.+|++||||++|+|++++.++.+.+.++++
T Consensus 123 ~~~~~~~~~~~~------~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~e 196 (240)
T 3qpm_A 123 FTHLAWIITPRK------QGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDE 196 (240)
T ss_dssp HHHHHHHHSCGG------GTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHH
T ss_pred HHHHHHHHHHHh------hcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHH
Confidence 999999987654 55555689999999999999999998777777889999999999999999888888889999
Q ss_pred HHHHHHhhhcccccCCccCCCCcCCCccccCCchhhhccC
Q psy15453 208 TLRLVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKEEL 247 (247)
Q Consensus 208 il~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (247)
+++.|++++.++++++.||++|.||+++|++.++..+||+
T Consensus 197 il~~l~~lq~~~~~~~~cp~~W~~g~~~~~~~~~~~~~~~ 236 (240)
T 3qpm_A 197 TLRLVQAFQYTDKHGEVCPAGWKPGSDTIIPDPSGKLKYF 236 (240)
T ss_dssp HHHHHHHHHHHHHHSCBBCTTCCTTSCCBCSSTTTTHHHH
T ss_pred HHHHHHHhhhhhhcCCccCCCCCCCCceecCCHHHHHHHH
Confidence 9999999999999999999999999999999999988874
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-40 Score=271.24 Aligned_cols=194 Identities=65% Similarity=1.151 Sum_probs=169.9
Q ss_pred ccccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 48 EGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 48 ~~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
.....+.+|+++|+|+++++.|++|+.++|++++||++||+|||++|||+|+.++|.|++++++|++++++||+||.|++
T Consensus 14 ~~~~~~~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~ 93 (211)
T 2pn8_A 14 GTENLYFQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQ 93 (211)
T ss_dssp -----CCSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCH
T ss_pred CccccCCCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 33456889999999999776577889999999999999999999999999999999999999999988999999999999
Q ss_pred HhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHH
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEE 207 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~ 207 (247)
+..++|.+...+ +.|+.+.+|+++.|.++.+++.||+.....|..+|++||||++|+|++.+.++...+.+.++
T Consensus 94 ~~~~~~~~~~~~------~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~e 167 (211)
T 2pn8_A 94 FTHLAWINTPRR------QGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDE 167 (211)
T ss_dssp HHHHHHHTSCGG------GTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHH
T ss_pred HHHHHHHHHhhh------ccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHH
Confidence 988888875433 34444679999999999999999997655555789999999999999999887777778999
Q ss_pred HHHHHHhhhcccccCCccCCCCcCCCccccCCchhhhccC
Q psy15453 208 TLRLVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKEEL 247 (247)
Q Consensus 208 il~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (247)
+++.|++++...++++.||.+|+||+.+|.+..+..++|+
T Consensus 168 ll~~l~~l~~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~ 207 (211)
T 2pn8_A 168 TLRLVQAFQYTDKHGEVCPAGWKPGSETIIPDPAGKLKYF 207 (211)
T ss_dssp HHHHHHHHHHHHHHCCBBCTTCCTTSCCBCSSTTTHHHHH
T ss_pred HHHHHHHhhhcccCCcccCCCCCCCCccccCCchhHHHHh
Confidence 9999999999888999999999999999999988888764
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=264.83 Aligned_cols=194 Identities=57% Similarity=1.010 Sum_probs=148.7
Q ss_pred ccccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 48 EGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 48 ~~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
.....+.+|+++|+|+++++.|.+|+.++|++++||++||+|||++|||+|+.+++.|++++++|++++++||+||.|+.
T Consensus 22 ~~~~~l~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~ 101 (220)
T 1zye_A 22 LEDPAPAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSH 101 (220)
T ss_dssp -----CCTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCH
T ss_pred ccCCcccCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 34456899999999999877678899999999999999999999999999999999999999999988999999999999
Q ss_pred HhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHH
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEE 207 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~ 207 (247)
+..++|.+.+.. ..++.+.+|+++.|.++.+.+.||+.....|..+|++||||++|+|++.+.++.+.+.+.++
T Consensus 102 ~~~~~~~~~~~~------~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~e 175 (220)
T 1zye_A 102 FSHLAWINTPRK------NGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEE 175 (220)
T ss_dssp HHHHHHHTSCGG------GTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHH
T ss_pred HHHHHHHHHHHH------hCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHH
Confidence 988998886543 45555689999999999999999998776677899999999999999999888888889999
Q ss_pred HHHHHHhhhcccccCCccCCCCcCCCccccCCchhhhccC
Q psy15453 208 TLRLVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKEEL 247 (247)
Q Consensus 208 il~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (247)
+++.|++++...++++.||++|+||+.++.+..++.++++
T Consensus 176 ll~~l~~l~~~~~~~~~cp~~W~~g~~~~~~~~~~~~~~~ 215 (220)
T 1zye_A 176 TLRLVKAFQFVEAHGEVSPANWTPESPTIKPHPTASREYF 215 (220)
T ss_dssp HHHHHHHHHHTTC---------------------------
T ss_pred HHHHHHHhhhhcccCCccCCCCCCCCceecCCHHHHHHHH
Confidence 9999999999988999999999999999999988777653
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=259.93 Aligned_cols=191 Identities=48% Similarity=0.933 Sum_probs=170.9
Q ss_pred cccccCCCCCCceeeeee-cCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 51 TNAVVMKPAPYWKGTAVV-DGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~-d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
..+.+|+++|+|++++.. |++|+.++|++++||++||+||+++|||+|+.+++.|++++++|++++++||+||.|+.+.
T Consensus 4 ~~~~~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~ 83 (202)
T 1uul_A 4 GEAEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYS 83 (202)
T ss_dssp CCCCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHH
T ss_pred ccccCCCcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence 367899999999997653 4444999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
.++|.+.+.. +.++.+.+|+++.|.++.+.+.||+.....|..+|++||||++|+|++.+.+..+.+++.++++
T Consensus 84 ~~~~~~~~~~------~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell 157 (202)
T 1uul_A 84 HLAWTSIERK------RGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEAL 157 (202)
T ss_dssp HHHHHHSCGG------GTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHH
T ss_pred HHHHHHHHHh------hCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHH
Confidence 9999886543 4455568999999999999999999877667789999999999999999988888788999999
Q ss_pred HHHHhhhcccccCCccCCCCcCCCccccCCchhhhccC
Q psy15453 210 RLVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKEEL 247 (247)
Q Consensus 210 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (247)
+.|++++...++++.||.+|+||++++.+..+..++|+
T Consensus 158 ~~l~~l~~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~ 195 (202)
T 1uul_A 158 RLVKAFQFVEKHGEVCPANWKPGDKTMKPDPEKSKEYF 195 (202)
T ss_dssp HHHHHHHHHHHHSCBBCTTCCTTSCCBCSSTGGGHHHH
T ss_pred HHHHHhhhhhhcCCccCCCcCCCCceeccChhhHHHHH
Confidence 99999999888999999999999999999988777663
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=264.34 Aligned_cols=190 Identities=37% Similarity=0.727 Sum_probs=146.4
Q ss_pred ccccccCCCCCCceeeeeecCCc--eeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 50 WTNAVVMKPAPYWKGTAVVDGNI--KEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 50 ~~~~~~G~~~P~f~l~~~~d~~G--~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+..+.+|+++|+|+++++ ..+| +.++|+++ +||++||+|||++|||+|+.++|.|++++++|++++++||+||.|+
T Consensus 22 M~~l~~G~~aP~F~l~~~-~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~ 100 (221)
T 2c0d_A 22 MKLSLVTKKAYNFTAQGL-NKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDS 100 (221)
T ss_dssp ----CTTSBCCCCEEEEE-CTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSC
T ss_pred cccCCCCCCCCCeEEecc-ccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 335789999999999443 1178 99999999 9999999999999999999999999999999998899999999999
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHH
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVE 206 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~ 206 (247)
++..++|.+...+ +.++.+++|+++.|.++.+++.||+. ...|..+|++||||++|+|++.+.++.....+.+
T Consensus 101 ~~~~~~~~~~~~~------~~g~~~~~fp~l~D~~~~~~~~ygv~-~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ 173 (221)
T 2c0d_A 101 VYSHLAWKNMPIE------KGGIGNVEFTLVSDINKDISKNYNVL-YDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQ 173 (221)
T ss_dssp HHHHHHHHHSCGG------GTCCCSCSSEEEECTTSHHHHHTTCE-ETTTEECEEEEEECTTSBEEEEEEECTTCCCCHH
T ss_pred HHHHHHHHHHhhh------hcCccCCceEEEECCchHHHHHcCCc-ccCCCccceEEEECCCCeEEEEEecCCCCCCCHH
Confidence 9989999886533 33444579999999999999999996 5445578999999999999999988777778899
Q ss_pred HHHHHHHhhhcccccCCccCCCCcCCCccccCCchhhhccC
Q psy15453 207 ETLRLVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKEEL 247 (247)
Q Consensus 207 ~il~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (247)
++++.|++++...+++.+||.+|++|+.++.+..+.+++|+
T Consensus 174 ell~~l~~L~~~~~~~~~cp~~W~~g~~~~~~~~~~~~~~~ 214 (221)
T 2c0d_A 174 EVLRTIDSIIHVDTSGEVCPINWKKGQKAFKPTTESLIDYM 214 (221)
T ss_dssp HHHHHHHHHHHHHHHCCSCC---------------------
T ss_pred HHHHHHHHHhhhhcCCCcCCCCCCCCCccccCCcHHHHHHH
Confidence 99999999999888999999999999999999988888764
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=259.76 Aligned_cols=185 Identities=52% Similarity=0.971 Sum_probs=166.0
Q ss_pred ccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 50 WTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 50 ~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
...+.+|+++|+|+++++.|++|++++|++++||++||+||+++||++|+.++|.|++++++|++++++||+||.|+.++
T Consensus 37 ~~~l~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~ 116 (222)
T 3ztl_A 37 TMVLLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYS 116 (222)
T ss_dssp ---CCSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHH
T ss_pred cccccCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 35689999999999987668899999999999999999999559999999999999999999998899999999999999
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
..+|.+.+.+ +.++.+.+|+++.|.+..+.+.|++.....|..+|++||||++|+|++.+.+..+....+++++
T Consensus 117 ~~~~~~~~~~------~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il 190 (222)
T 3ztl_A 117 HLAWDNLDRK------SGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETL 190 (222)
T ss_dssp HHHHHHSCGG------GTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHH
T ss_pred HHHHHHHhhh------hccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHH
Confidence 9999886654 5455578999999999999999999877777789999999999999999988888777899999
Q ss_pred HHHHhhhcccccCCccCCCCcCCCccccCCc
Q psy15453 210 RLVRAFQYTDEHGEACPSGWQPGQRTISNRE 240 (247)
Q Consensus 210 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (247)
+.|++++...+++++||.+|.||++++.+.+
T Consensus 191 ~~l~~l~~~~~~~~~c~~~w~~~~~~~~~~~ 221 (222)
T 3ztl_A 191 RLLDAFQFVEKHGEVCPVNWKRGQHGIKVNQ 221 (222)
T ss_dssp HHHHHHHHHHHHSCBBCTTCCTTSCCBCC--
T ss_pred HHHHHhhcccccCccCCcCcCCCCccccCCC
Confidence 9999999999999999999999999998865
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=257.80 Aligned_cols=189 Identities=42% Similarity=0.800 Sum_probs=167.8
Q ss_pred cccccCCCCCCceeeeeecCCc--eeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNI--KEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G--~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
..+.+|+++|+|+++++ ..+| +.++|+++ +||++||+||+++|||+|+.+++.|++++++|++++++||+||.|++
T Consensus 19 ~~l~~G~~aP~f~l~~~-~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~ 97 (213)
T 2i81_A 19 SPTYVGKEAPFFKAEAV-FGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSK 97 (213)
T ss_dssp -CCCBTSBCCCCEEEEE-CTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCH
T ss_pred ccccCCCcCCCeEeecc-ccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 46789999999999543 1168 89999999 99999999999999999999999999999999988999999999999
Q ss_pred HhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHH
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEE 207 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~ 207 (247)
+..++|.+.... ..++.+++|+++.|.++.+++.||+.. +.|..+|++||||++|+|++.+.+....+++.++
T Consensus 98 ~~~~~~~~~~~~------~~g~~~~~fp~l~D~~~~~~~~ygv~~-~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~e 170 (213)
T 2i81_A 98 YTHLAWKKTPLA------KGGIGNIKHTLLSDITKSISKDYNVLF-DDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDE 170 (213)
T ss_dssp HHHHHHHSSCGG------GTCCCSCSSEEEECTTSHHHHHTTCEE-TTTEECEEEEEECTTSBEEEEEEECTTCCCCHHH
T ss_pred HHHHHHHHHHHh------hCCccCCCceEEECCchHHHHHhCCcc-ccCCcccEEEEECCCCEEEEEEecCCCCCCCHHH
Confidence 988888876533 345546899999999999999999986 4566789999999999999999887777788999
Q ss_pred HHHHHHhhhcccccCCccCCCCcCCCccccCCchhhhccC
Q psy15453 208 TLRLVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKEEL 247 (247)
Q Consensus 208 il~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (247)
+++.|++++...++++.||.+|+||+.++.+..+..++|+
T Consensus 171 ll~~l~~l~~~~~~~~~cp~~w~~g~~~~~~~~~~~~~~~ 210 (213)
T 2i81_A 171 ILRIIDAIQHHEKYGDVCPANWQKGKVSMKPSEEGVAQYL 210 (213)
T ss_dssp HHHHHHHHHHHHHHCCBCCTTCCTTSCCBCSSTTTHHHHT
T ss_pred HHHHHHHHHhhhhcCCCcCCCCCcCCccccCCchhHHHHh
Confidence 9999999998888999999999999999999988888775
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-37 Score=247.88 Aligned_cols=179 Identities=35% Similarity=0.669 Sum_probs=157.4
Q ss_pred ccCCCCCCceeeeeecCCc--eeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHH
Q psy15453 54 VVMKPAPYWKGTAVVDGNI--KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHR 131 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G--~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~ 131 (247)
.+|+++|+|++++.. +| +.++|++++||++||+||+++|||+|+.++|.|++++++|++++++||+||.|+++.++
T Consensus 2 ~~G~~aP~f~l~~~~--~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~ 79 (186)
T 1n8j_A 2 LINTKIKPFKNQAFK--NGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHK 79 (186)
T ss_dssp CTTCBCCCCEEEEEE--TTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHH
T ss_pred CCCCcCCCcEeeccc--CCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Confidence 579999999996541 37 89999999999999999966999999999999999999999889999999999998888
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHH
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRL 211 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~ 211 (247)
+|.+.+ .++.+++|++++|.++.+++.||+.....|+..|++||||++|+|++.+.++.....+.+++++.
T Consensus 80 ~~~~~~---------~~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~ 150 (186)
T 1n8j_A 80 AWHSSS---------ETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRK 150 (186)
T ss_dssp HHHHHC---------TTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHH
T ss_pred HHHHHc---------CcccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHH
Confidence 888753 12335789999999999999999986555556899999999999999998877666789999999
Q ss_pred HHhhhccccc-CCccCCCCcCCCccccCCchhh
Q psy15453 212 VRAFQYTDEH-GEACPSGWQPGQRTISNREEDE 243 (247)
Q Consensus 212 l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 243 (247)
|++++...++ ++.||++|.+|+.++.+..+..
T Consensus 151 l~~l~~~~~~p~~~~p~~w~~~~~~~~~~~~~~ 183 (186)
T 1n8j_A 151 IKAAQYVAAHPGEVCPAKWKEGEATLAPSLDLV 183 (186)
T ss_dssp HHHHHHHHHSTTCBBCTTCCTTSCCBCCSSTTT
T ss_pred HHHHHHHhhcCCCccCCCCCCCCccccCChHhc
Confidence 9999998888 8999999999999998876643
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=250.99 Aligned_cols=186 Identities=39% Similarity=0.789 Sum_probs=152.1
Q ss_pred ccCCCCCCceeeeeecCCc--eeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhH
Q psy15453 54 VVMKPAPYWKGTAVVDGNI--KEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTH 130 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G--~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~ 130 (247)
++|+++|+|++++. ..+| +.++|+++ +||++||+|||++||++|+.++|.|++++++|++++++||+||.|+++.+
T Consensus 1 ~~G~~aP~f~l~~~-~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~ 79 (192)
T 2h01_A 1 AFQGQAPSFKAEAV-FGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTH 79 (192)
T ss_dssp CCSSBCCCCEEEEE-CTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred CCCCcCCCcEeEee-ecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHH
Confidence 46999999999443 1178 99999999 99999999999999999999999999999999988999999999999988
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLR 210 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~ 210 (247)
++|.+.+.. +.++.+.+|+++.|.++.+++.||+.. +.|..+|++||||++|+|++.+.+....+.+.+++++
T Consensus 80 ~~~~~~~~~------~~~~~~~~~~~l~D~~~~~~~~~gv~~-~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~ 152 (192)
T 2h01_A 80 LAWKKTPLS------QGGIGNIKHTLISDISKSIARSYDVLF-NESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILR 152 (192)
T ss_dssp HHHHTSCGG------GTCCCSCSSEEEECTTSHHHHHTTCEE-TTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHH
T ss_pred HHHHHhHHh------hCCccCCCcCeEECCcHHHHHHhCCcC-cCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHH
Confidence 998886543 345556899999999999999999986 4566789999999999999999887766778999999
Q ss_pred HHHhhhcccccCCccCCCCcCCCccccCCchhhhccC
Q psy15453 211 LVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKEEL 247 (247)
Q Consensus 211 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (247)
.|++++...++++.||.+|+||+++|.+..+..++++
T Consensus 153 ~l~~l~~~~~~~~~cp~~w~~~~~~~~~~~~~~~~~~ 189 (192)
T 2h01_A 153 LIDALQHHEKYGDVCPANWQKGKESMKPSEEGVAKYL 189 (192)
T ss_dssp HHHHHHHHHHHCCCCCSSCCCC---------------
T ss_pred HHHHHhhhhhcCCCccCCCCCCCccccCCchhhhhHh
Confidence 9999998888899999999999999999988887764
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-36 Score=249.71 Aligned_cols=177 Identities=26% Similarity=0.423 Sum_probs=155.2
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTH 130 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk-~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~ 130 (247)
.+.+|+++|+|++. +.+| .++|++++|| ++||+||+++|||+|+.+++.|++++++|+++|++||+||.|+.+++
T Consensus 4 ~l~~G~~aP~F~l~---~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~ 79 (224)
T 1prx_A 4 GLLLGDVAPNFEAN---TTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDH 79 (224)
T ss_dssp -CCTTCBCCCCEEE---ETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHH
T ss_pred cCCCcCCCCCcEEe---cCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHH
Confidence 46789999999995 4488 9999999998 77777766999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccccCCC---CCcceeEEecCCchHHHHhCCcccCC------CccceeEEEEcCCCcEEEEEecCCCC
Q psy15453 131 RAWINSLKKDNSLKKDNRL---DKLKIPLLSDLTHEISRDYGVYLEDK------GHSLRGLFIIDREGIVRQITLNDLPV 201 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~---~~~~~~~l~D~~~~~~~~~~~~~~~~------g~~~p~~~lId~~G~v~~~~~~~~~~ 201 (247)
.+|.+.+.. +.++ .+++|+++.|.++.+++.||+...+. ...+|++||||++|+|++.+.++...
T Consensus 80 ~~~~~~i~~------~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~ 153 (224)
T 1prx_A 80 LAWSKDINA------YNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATT 153 (224)
T ss_dssp HHHHHHHHH------HTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTB
T ss_pred HHHHHHHHH------hhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCC
Confidence 999987654 3332 36899999999999999999975321 24689999999999999999888877
Q ss_pred CCCHHHHHHHHHhhhcccccCCccCCCCcCCCccccC
Q psy15453 202 GRSVEETLRLVRAFQYTDEHGEACPSGWQPGQRTISN 238 (247)
Q Consensus 202 ~~~~~~il~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (247)
+++.+++++.|++++..+++++.||++|+||+++|.+
T Consensus 154 gr~~~eil~~i~~l~~~~~~~~~~p~~W~~g~~~~~~ 190 (224)
T 1prx_A 154 GRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVL 190 (224)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCEEBCTTCCTTSCEEEC
T ss_pred CCCHHHHHHHHHHHHhhccCCcCCCCCCCCCCceEeC
Confidence 8899999999999999999999999999999999765
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=253.78 Aligned_cols=176 Identities=26% Similarity=0.445 Sum_probs=155.1
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHR 131 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk-~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~ 131 (247)
+.+|+++|+|+++ +.+| .++|++++|| ++||+||+++|||+|+.|++.|++++++|+++|++||+||.|+.+.++
T Consensus 3 l~iG~~aPdF~l~---~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~ 78 (233)
T 2v2g_A 3 ITLGEVFPNFEAD---STIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHK 78 (233)
T ss_dssp CCTTCBCCCCEEE---ETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHH
T ss_pred CCCCCCCCCcEEe---cCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHH
Confidence 6789999999995 4488 9999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccCCCC-CcceeEEecCCchHHHHhCCcccC----C--CccceeEEEEcCCCcEEEEEecCCCCCCC
Q psy15453 132 AWINSLKKDNSLKKDNRLD-KLKIPLLSDLTHEISRDYGVYLED----K--GHSLRGLFIIDREGIVRQITLNDLPVGRS 204 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~~~~~~~~----~--g~~~p~~~lId~~G~v~~~~~~~~~~~~~ 204 (247)
+|.+.+.. +.+.. +++|+++.|.++.+++.||+...+ . +..+|++||||++|+|++.+.++...+++
T Consensus 79 ~~~~~i~~------~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~ 152 (233)
T 2v2g_A 79 EWSEDVKC------LSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRN 152 (233)
T ss_dssp HHHHHHHH------HHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCC
T ss_pred HHHHHHHH------hhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCC
Confidence 99986542 11110 468999999999999999997432 1 23679999999999999999888887889
Q ss_pred HHHHHHHHHhhhcccccCCccCCCCcCCCccccC
Q psy15453 205 VEETLRLVRAFQYTDEHGEACPSGWQPGQRTISN 238 (247)
Q Consensus 205 ~~~il~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (247)
.+++++.|++++..+++++.||+||+||+++|.+
T Consensus 153 ~~eilr~l~~Lq~~~~~~~~~p~~W~~g~~~~~~ 186 (233)
T 2v2g_A 153 FSEILRVIDSLQLTAQKKVATPADWQPGDRCMVV 186 (233)
T ss_dssp HHHHHHHHHHHHHHHHSSEEBCTTCCTTSCEEEC
T ss_pred HHHHHHHHHHHHhhccCCccCCCCcCcCCceEeC
Confidence 9999999999999999999999999999999764
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=250.72 Aligned_cols=177 Identities=27% Similarity=0.480 Sum_probs=154.2
Q ss_pred cccCCCCCCceeeeeecC--CceeEEcCCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 53 AVVMKPAPYWKGTAVVDG--NIKEIKLTDYRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~--~G~~v~l~~~~gk-~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
+.+|+++|+|++ .+. +| .++|++++|| ++||+||+++|||+|+.|++.|++++++|+++|++||+||.|+.++
T Consensus 3 l~iG~~aP~F~l---~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~ 78 (220)
T 1xcc_A 3 YHLGATFPNFTA---KASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKES 78 (220)
T ss_dssp CCTTCBCCCCEE---CBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHH
T ss_pred CCCCCCCCCcEe---ecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHH
Confidence 678999999998 555 78 9999999998 7777776699999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC----C--ccceeEEEEcCCCcEEEEEecCCCCCC
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK----G--HSLRGLFIIDREGIVRQITLNDLPVGR 203 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~----g--~~~p~~~lId~~G~v~~~~~~~~~~~~ 203 (247)
+++|.+.+.. +.+-.+++|+++.|.++.+++.||+...+. | ..+|++||||++|+|++.+.++.+.++
T Consensus 79 ~~~~~~~i~~------~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~ 152 (220)
T 1xcc_A 79 HDKWIEDIKY------YGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGR 152 (220)
T ss_dssp HHHHHHHHHH------HHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCC
T ss_pred HHHHHHHHHH------HhcCCCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCC
Confidence 9999886543 201126799999999999999999964321 2 357999999999999999988887788
Q ss_pred CHHHHHHHHHhhhcccccCCccCCCCcCCCccccCC
Q psy15453 204 SVEETLRLVRAFQYTDEHGEACPSGWQPGQRTISNR 239 (247)
Q Consensus 204 ~~~~il~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 239 (247)
+.+++++.|++++..+++++.||++|+||+++|.+-
T Consensus 153 ~~~ell~~i~~lq~~~~~~~~~p~~w~~g~~~~~~p 188 (220)
T 1xcc_A 153 NAHEILRVLKSLQLTYTTPVATPVNWNEGDKCCVIP 188 (220)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEBCTTCCTTSCEEECT
T ss_pred CHHHHHHHHHHHHhhhcCCcccCCCcCcCCceEeCC
Confidence 999999999999999999999999999999997654
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=237.29 Aligned_cols=181 Identities=33% Similarity=0.649 Sum_probs=142.9
Q ss_pred cccCCCCCCceeeeeecCCce----eEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIK----EIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~----~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
+.+|+++|+|++.+. +|+ .+++++++||++||+|||++||++|+.++|.|++++++|++++++|++|+.|+++
T Consensus 1 ~~~G~~~P~f~l~~~---~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~ 77 (187)
T 1we0_A 1 SLIGTEVQPFRAQAF---QSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHF 77 (187)
T ss_dssp CCTTCBCCCCEEEEE---CSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHH
T ss_pred CCCCCcCCCeEEecc---CCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence 367999999999665 778 9999999999999999999999999999999999999999889999999999988
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHH
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEET 208 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~i 208 (247)
..++|.+.+.. ..+++|+++.|.+..+.+.||+.....|..+|++||||++|+|++.+.+......+.+++
T Consensus 78 ~~~~~~~~~~~---------~~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l 148 (187)
T 1we0_A 78 VHKAWHENSPA---------VGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTL 148 (187)
T ss_dssp HHHHHHHSCHH---------HHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHH
T ss_pred HHHHHHHHhcc---------ccCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHH
Confidence 88888875421 114789999999999999999986666667899999999999999998877666678999
Q ss_pred HHHHHhhhccccc-CCccCCCCcCCCccccCCchhhhc
Q psy15453 209 LRLVRAFQYTDEH-GEACPSGWQPGQRTISNREEDEKE 245 (247)
Q Consensus 209 l~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 245 (247)
++.|+++....++ ++.||.+|++|+++|...++..++
T Consensus 149 ~~~l~~l~~~~~~~~~~~p~~w~~~~~~~~~~~~~~~~ 186 (187)
T 1we0_A 149 INKVKAAQYVRENPGEVCPAKWEEGGETLKPSLDIVGK 186 (187)
T ss_dssp HHHHHHHHHHHTSTTCCC--------------------
T ss_pred HHHHHHHhhhhhCCCcccccccccCCceeecCHHHhcc
Confidence 9999999988877 999999999999999998876543
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=239.81 Aligned_cols=186 Identities=41% Similarity=0.781 Sum_probs=145.6
Q ss_pred cccCCCCCCceeeeeecCCce---eEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIK---EIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~---~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
+.+|+++|+|++++. ..+|+ .++++++ +||++||+||+++||++|+.++|.|++++++|++++++||+|+.|+++
T Consensus 1 ~~~G~~~P~f~l~~~-~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~ 79 (198)
T 1zof_A 1 MVVTKLAPDFKAPAV-LGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQ 79 (198)
T ss_dssp CCTTSBCCCCEEEEE-CTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHH
T ss_pred CCCCCcCCceEeecc-cCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence 367999999999443 11788 9999999 999999999999999999999999999999999889999999999988
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHH
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEET 208 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~i 208 (247)
..++|.+.+.. +.+..+++|+++.|.+..+.+.||+..+ .|..+|++||||++|+|++.+.|..+...+.+++
T Consensus 80 ~~~~~~~~~~~------~~~~~~~~~~~~~d~~~~~~~~~~v~~~-~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l 152 (198)
T 1zof_A 80 VHFAWKNTPVE------KGGIGQVSFPMVADITKSISRDYDVLFE-EAIALRGAFLIDKNMKVRHAVINDLPLGRNADEM 152 (198)
T ss_dssp HHHHHHTSCGG------GTCCCCCSSCEEECTTSHHHHHTTCEET-TTEECEEEEEEETTTEEEEEEEESSSCCCHHHHH
T ss_pred HHHHHHHhhhh------cccccCceeEEEECCchHHHHHhCCccc-CCcccceEEEECCCCEEEEEEecCCCCCCCHHHH
Confidence 88888886433 4444578999999999999999999753 3557899999999999999998877777788999
Q ss_pred HHHHHhhhcccccCCccCCCCcCCCccccCCchhhhcc
Q psy15453 209 LRLVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKEE 246 (247)
Q Consensus 209 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (247)
++.|++++...++++.||.+|++|++++.++.+..+++
T Consensus 153 ~~~l~~l~~~~~~~~~~p~~w~~~~~~~~~~~~~~~~~ 190 (198)
T 1zof_A 153 LRMVDALLHFEEHGEVCPAGWRKGDKGMKATHQGVAEY 190 (198)
T ss_dssp HHHHHHHHHHHSSCCCCC--------------------
T ss_pred HHHHHHHHHhhccCCccCCcCcCCCccccCCcccccce
Confidence 99999999888899999999999999999887654443
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=247.17 Aligned_cols=178 Identities=30% Similarity=0.636 Sum_probs=159.1
Q ss_pred ccccCCCCCCceeeeeecCCceeEEc-CCC--CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKL-TDY--RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l-~~~--~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
.+.+|+++|+|++.+. +| .++| +++ +||++||+||+++|||+|+.+++.|++++++|+++|++||+||.|+.+
T Consensus 4 ~~~iG~~aPdF~l~~~---~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~ 79 (249)
T 3a2v_A 4 IPLIGERFPEMEVTTD---HG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVF 79 (249)
T ss_dssp ECCTTSBCCCEEEEET---TE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHH
T ss_pred cCCCCCCCCCeEEEcC---CC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHH
Confidence 4688999999999554 77 7999 999 999877766559999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCc-cceeEEEEcCCCcEEEEEecCCCCCCCHHH
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGH-SLRGLFIIDREGIVRQITLNDLPVGRSVEE 207 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~-~~p~~~lId~~G~v~~~~~~~~~~~~~~~~ 207 (247)
++.+|.+.... +.+. +++||++.|.++.+++.||+..+..|. .+|++||||++|+|++.+.++.+.+++.++
T Consensus 80 ~~~~w~~~~~~------~~~~-~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~E 152 (249)
T 3a2v_A 80 SHIKWKEWIER------HIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDE 152 (249)
T ss_dssp HHHHHHHHHHH------HTCC-CCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHH
T ss_pred HHHHHHHHHHH------hcCC-CCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHH
Confidence 99999987654 3333 689999999999999999998665555 789999999999999999888888889999
Q ss_pred HHHHHHhhhcccccCCccCCCCcC-----CCccccCCch
Q psy15453 208 TLRLVRAFQYTDEHGEACPSGWQP-----GQRTISNREE 241 (247)
Q Consensus 208 il~~l~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 241 (247)
+++.|++++..+++++.||++| | |+++|.+...
T Consensus 153 llr~I~alq~~~~~~~~~Pa~W-~~~~~~g~~~~~~~~~ 190 (249)
T 3a2v_A 153 ILRIVKALKLGDSLKRAVPADW-PNNEIIGEGLIVPPPT 190 (249)
T ss_dssp HHHHHHHHHHHHHHTCBBCTTT-TSBTTTBTCEEECCCC
T ss_pred HHHHHHHHHhccccCccCCCCC-CCCCCCCCCeecCCCC
Confidence 9999999999999999999999 9 9999988755
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-34 Score=231.18 Aligned_cols=178 Identities=35% Similarity=0.594 Sum_probs=136.3
Q ss_pred ccccCCCCCCceeeeeec----------CCc--eeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEE
Q psy15453 52 NAVVMKPAPYWKGTAVVD----------GNI--KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEV 119 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d----------~~G--~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~v 119 (247)
.+.+|+++|+|++++... .+| +.+++++++||++||+||+++|||+|+.++|.|++++++|++++++|
T Consensus 3 ~l~~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~v 82 (195)
T 2bmx_A 3 LLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQI 82 (195)
T ss_dssp BCCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEE
T ss_pred cCCCCCcCCCcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEE
Confidence 578999999999977610 016 89999999999999999999999999999999999999999889999
Q ss_pred EEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 120 VGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 120 l~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
|+|+.|+.+..++|.+.+. ++.+++|+++.|.+..+.+.|++... .|..+|++||||++|+|++.+.+..
T Consensus 83 v~Vs~d~~~~~~~~~~~~~---------~~~~~~~~~~~d~~~~~~~~~~v~~~-~g~~~P~~~lid~~G~i~~~~~g~~ 152 (195)
T 2bmx_A 83 LGVSIDSEFAHFQWRAQHN---------DLKTLPFPMLSDIKRELSQAAGVLNA-DGVADRVTFIVDPNNEIQFVSATAG 152 (195)
T ss_dssp EEEESSCHHHHHHHHHHCT---------TGGGCCSCEEECTTSHHHHHHTCBCT-TSSBCEEEEEECTTSBEEEEEEECT
T ss_pred EEEECCCHHHHHHHHHHhc---------cccCCceeEEeCCchHHHHHhCCccc-CCCccceEEEEcCCCeEEEEEecCC
Confidence 9999999888899888641 22357899999999999999999755 4567899999999999999998887
Q ss_pred CCCCCHHHHHHHHHhhhcccccCCccCCCCcCCCccccCCchhh
Q psy15453 200 PVGRSVEETLRLVRAFQYTDEHGEACPSGWQPGQRTISNREEDE 243 (247)
Q Consensus 200 ~~~~~~~~il~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (247)
+...+.+++++.|+.+.. ++.||.+|++|++++.+.+|..
T Consensus 153 ~~~~~~~~l~~~l~~l~~----~~~~p~~w~~~~~~~~~~~~~~ 192 (195)
T 2bmx_A 153 SVGRNVDEVLRVLDALQS----DELCASNWRKGDPTLDAGELLK 192 (195)
T ss_dssp TCCCCHHHHHHHHHHHHC--------------------------
T ss_pred CCCCCHHHHHHHHHHHhh----CCCcCcccccCCcccCCChHHh
Confidence 767789999999999875 6799999999999999988854
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=227.20 Aligned_cols=150 Identities=31% Similarity=0.548 Sum_probs=128.2
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhH
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTH 130 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~ 130 (247)
..+++|+++|+|++ .|.+|+.++|++++||++||+||+++|||+|+.++|.|+++++++++.++++++||.|+++.+
T Consensus 2 ~~l~vG~~aPdF~l---~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~ 78 (157)
T 4g2e_A 2 HMVEIGELAPDFEL---PDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSN 78 (157)
T ss_dssp CCCCTTSBCCCCEE---EBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHH
T ss_pred CcCCCCCCCcCeEe---ECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHH
Confidence 36899999999999 566999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCC-----ccceeEEEEcCCCcEEEEEecCCC-CCCC
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG-----HSLRGLFIIDREGIVRQITLNDLP-VGRS 204 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g-----~~~p~~~lId~~G~v~~~~~~~~~-~~~~ 204 (247)
++|.+++ +++|++++|++++++++||+.....+ +..|++||||++|+|++.++++.. ...+
T Consensus 79 ~~~~~~~-------------~~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~ 145 (157)
T 4g2e_A 79 KAFKEHN-------------KLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPP 145 (157)
T ss_dssp HHHHHHT-------------TCCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCC
T ss_pred HHHHHHc-------------CCcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCC
Confidence 9998854 67999999999999999999755432 357999999999999999877654 4568
Q ss_pred HHHHHHHHHhhh
Q psy15453 205 VEETLRLVRAFQ 216 (247)
Q Consensus 205 ~~~il~~l~~l~ 216 (247)
.+++++.|++|.
T Consensus 146 ~~eil~~l~~Ls 157 (157)
T 4g2e_A 146 YDEIEKVVKSLS 157 (157)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC
Confidence 999999999873
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=224.55 Aligned_cols=149 Identities=28% Similarity=0.457 Sum_probs=132.9
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCC--CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDY--RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~--~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
.+++|+++|+|++ .|.+|+.++|+++ +||++||+||+++|||+|+.+++.|++++++|+++|+++++||.|+++.
T Consensus 4 ml~vG~~aPdF~l---~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~ 80 (164)
T 4gqc_A 4 LVELGEKAPDFTL---PNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWC 80 (164)
T ss_dssp CCCTTSBCCCCEE---EBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHH
T ss_pred cccCCCCCcCcEe---ECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHH
Confidence 4789999999999 5669999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC----CccceeEEEEcCCCcEEEEEecCCC-CCCC
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK----GHSLRGLFIIDREGIVRQITLNDLP-VGRS 204 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~----g~~~p~~~lId~~G~v~~~~~~~~~-~~~~ 204 (247)
+++|.+.+ +++|++++|+++++++.||+..++. +...|++||||++|+|++.+++... ..++
T Consensus 81 ~~~~~~~~-------------~~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~ 147 (164)
T 4gqc_A 81 LKKFKDEN-------------RLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPD 147 (164)
T ss_dssp HHHHHHHT-------------TCCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCC
T ss_pred HHHHHHhc-------------CcccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCC
Confidence 99998854 6799999999999999999975432 2357899999999999999977654 4568
Q ss_pred HHHHHHHHHhhh
Q psy15453 205 VEETLRLVRAFQ 216 (247)
Q Consensus 205 ~~~il~~l~~l~ 216 (247)
.+++++.|+.|.
T Consensus 148 ~~eil~~l~~l~ 159 (164)
T 4gqc_A 148 YDEVVREANKIA 159 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=210.91 Aligned_cols=153 Identities=30% Similarity=0.426 Sum_probs=135.8
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCCe-EEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKY-LVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHR 131 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~-vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~ 131 (247)
+++|+++|+|++ .|.+|+.+++++++||+ +||+||+++|||+|+.++|.|++++++|+++|++||+|+.|+++..+
T Consensus 2 l~~G~~~P~f~l---~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~ 78 (161)
T 3drn_A 2 VKVGDKAPLFEG---IADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHK 78 (161)
T ss_dssp CCTTSBCCCCEE---EETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHH
T ss_pred CCCCCcCCCeEe---ecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHH
Confidence 678999999999 45599999999999997 99999999999999999999999999999889999999999999999
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHH
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRL 211 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~ 211 (247)
+|.+.. +++|+++.|.+..+.+.||+... ...+|++||||++|+|++.+.+........+++++.
T Consensus 79 ~~~~~~-------------~~~~~~~~d~~~~~~~~~~v~~~--~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~ 143 (161)
T 3drn_A 79 RFKEKY-------------KLPFILVSDPDKKIRELYGAKGF--ILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKA 143 (161)
T ss_dssp HHHHHT-------------TCCSEEEECTTSHHHHHTTCCCS--SSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHH
T ss_pred HHHHHh-------------CCCceEEECCcHHHHHHcCCCCc--CcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHH
Confidence 998864 57899999999999999999810 123899999999999999998877778889999999
Q ss_pred HHhhhcccccCC
Q psy15453 212 VRAFQYTDEHGE 223 (247)
Q Consensus 212 l~~l~~~~~~~~ 223 (247)
|++++.....++
T Consensus 144 l~~l~~~~~~~~ 155 (161)
T 3drn_A 144 LKQIKEEEISLE 155 (161)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHhhhhhcchh
Confidence 999987666543
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-31 Score=207.54 Aligned_cols=150 Identities=23% Similarity=0.336 Sum_probs=131.6
Q ss_pred ccccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 48 EGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 48 ~~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
.....+.+|+++|+|++ .|.+|+++++++++||++||+||+++||++|+.++|.|++++++| +++++|+||.|++
T Consensus 11 ~~~~~~~~G~~~P~f~l---~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~v~vv~is~d~~ 85 (163)
T 1psq_A 11 FTGKQLQVGDKALDFSL---TTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSMDLP 85 (163)
T ss_dssp CSSCCCCTTSBCCCCEE---ECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCH
T ss_pred eecCCCCCCCCCCCEEE---EcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CCcEEEEEECCCH
Confidence 34456889999999999 566999999999999999999996699999999999999999999 5999999999999
Q ss_pred HhHHHHHHHhhccccccccCCCCCc-ceeEEec-CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC-CCCCC
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKL-KIPLLSD-LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL-PVGRS 204 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D-~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~-~~~~~ 204 (247)
+..++|.+.+ +. +|+++.| .++.+++.||+.....|+..|++||||++|+|++.+.+.. ...++
T Consensus 86 ~~~~~~~~~~-------------~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~ 152 (163)
T 1psq_A 86 FAQKRWCGAE-------------GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPN 152 (163)
T ss_dssp HHHHHHHHHH-------------TCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCC
T ss_pred HHHHHHHHhc-------------CCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCC
Confidence 9899998864 56 8999999 8899999999986544555799999999999999997753 45677
Q ss_pred HHHHHHHHHhh
Q psy15453 205 VEETLRLVRAF 215 (247)
Q Consensus 205 ~~~il~~l~~l 215 (247)
.+++++.|++|
T Consensus 153 ~~~~l~~l~~l 163 (163)
T 1psq_A 153 FEAAIAAAKAL 163 (163)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 89999998864
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-31 Score=206.97 Aligned_cols=148 Identities=30% Similarity=0.427 Sum_probs=131.0
Q ss_pred ccccCCCCCCce--eeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 52 NAVVMKPAPYWK--GTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 52 ~~~~G~~~P~f~--l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
.+.+|+++|+|+ + .|.+|+++++++++||++||+||+++|||+|+.+++.|++++++|+++|++||+|+.|+++.
T Consensus 6 ~l~~G~~~P~f~~~l---~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~ 82 (163)
T 3gkn_A 6 DAVLELPAATFDLPL---SLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKS 82 (163)
T ss_dssp CCCCCCCGGGGGCCE---ECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred ccccCCcCCCccccc---cCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence 588999999999 9 56699999999999999999999559999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC--Cc----cceeEEEEcCCCcEEEEEecCCCCCC
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK--GH----SLRGLFIIDREGIVRQITLNDLPVGR 203 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~--g~----~~p~~~lId~~G~v~~~~~~~~~~~~ 203 (247)
.++|.+.+ +.+|+++.|.+..+.+.||+..... |. .+|++||||++|+|++.+ .......
T Consensus 83 ~~~~~~~~-------------~~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~-~~~~~~~ 148 (163)
T 3gkn_A 83 HDNFCAKQ-------------GFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW-RKVKVAG 148 (163)
T ss_dssp HHHHHHHH-------------CCSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEE-CSCCSTT
T ss_pred HHHHHHHh-------------CCCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEE-cCCCccc
Confidence 99999865 6799999999999999999984321 10 189999999999999998 5556667
Q ss_pred CHHHHHHHHHhhh
Q psy15453 204 SVEETLRLVRAFQ 216 (247)
Q Consensus 204 ~~~~il~~l~~l~ 216 (247)
..+++++.|++++
T Consensus 149 ~~~~il~~l~~l~ 161 (163)
T 3gkn_A 149 HADAVLAALKAHA 161 (163)
T ss_dssp HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHh
Confidence 7899999998875
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=204.98 Aligned_cols=149 Identities=21% Similarity=0.277 Sum_probs=131.9
Q ss_pred ccccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 48 EGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 48 ~~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
.....+++|+++|+|++ .|.+|+.++|++++||++||+||+++|||+|+.++|.|++++++ +++++|+||.|++
T Consensus 15 ~~~~~l~~G~~aP~f~l---~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~~~vv~is~d~~ 88 (166)
T 3p7x_A 15 LKGQQINEGDFAPDFTV---LDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EEGIVLTISADLP 88 (166)
T ss_dssp EESCCCCTTSBCCCCEE---ECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TTSEEEEEESSCH
T ss_pred eecccCCCCCCCCCeEE---EcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CCCEEEEEECCCH
Confidence 44557899999999999 56699999999999999999999899999999999999999988 5899999999999
Q ss_pred HhHHHHHHHhhccccccccCCCCCc-ceeEEecC-CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecC-CCCCCC
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKL-KIPLLSDL-THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLND-LPVGRS 204 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~-~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~-~~~~~~ 204 (247)
+..++|.+.+ ++ +|++++|. ++.+++.||+.....|...|++||||++|+|++.+.+. ....++
T Consensus 89 ~~~~~~~~~~-------------~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~ 155 (166)
T 3p7x_A 89 FAQKRWCASA-------------GLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPD 155 (166)
T ss_dssp HHHHHHHHHH-------------TCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEECSBTTSCCC
T ss_pred HHHHHHHHHc-------------CCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEEcCCcccCCC
Confidence 9999998865 56 89999999 89999999998665566689999999999999997654 456778
Q ss_pred HHHHHHHHHhh
Q psy15453 205 VEETLRLVRAF 215 (247)
Q Consensus 205 ~~~il~~l~~l 215 (247)
.+++++.|+++
T Consensus 156 ~~~il~~l~~l 166 (166)
T 3p7x_A 156 FDAALAAYKNI 166 (166)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhcC
Confidence 99999998764
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=208.53 Aligned_cols=150 Identities=22% Similarity=0.346 Sum_probs=130.3
Q ss_pred ccccccCCCCCCceeeeeecCCceeEEcCC-CCCCeEEEEEEeCCCCCCcH-HHHHHHHHHHHHHHhcCcEEEE-EeCCC
Q psy15453 50 WTNAVVMKPAPYWKGTAVVDGNIKEIKLTD-YRGKYLVFFFYPLDFTFVCP-TEVLALNEKIDEFHKIGAEVVG-VSVDS 126 (247)
Q Consensus 50 ~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~-~~gk~vvl~F~~a~~Cp~C~-~~~~~l~~l~~~~~~~~~~vl~-Vs~d~ 126 (247)
...+.+|+++|+|+++ .+.+|+.++|++ ++||++||+||+++|||+|+ .|+|.|++++++|+++|+++|+ ||.|+
T Consensus 12 ~~~~~vG~~aPdf~l~--~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~ 89 (173)
T 3mng_A 12 SAPIKVGDAIPAVEVF--EGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVND 89 (173)
T ss_dssp -CCCCTTCBCCCCEEE--CSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSC
T ss_pred CCCCCCCCCCCCeEee--eCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 3468999999999994 166999999999 59999888888899999999 4999999999999999999997 99999
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcc--eeEEecCCchHHHHhCCcccCC-----C--ccceeEEEEcCCCcEEEEEec
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLK--IPLLSDLTHEISRDYGVYLEDK-----G--HSLRGLFIIDREGIVRQITLN 197 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~~~~~~~~-----g--~~~p~~~lId~~G~v~~~~~~ 197 (247)
++..++|.++. +.+ |++++|++++++++||+..++. | ...|++|||| +|+|++++++
T Consensus 90 ~~~~~~f~~~~-------------~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~ 155 (173)
T 3mng_A 90 AFVTGEWGRAH-------------KAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVE 155 (173)
T ss_dssp HHHHHHHHHHT-------------TCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEEC
T ss_pred HHHHHHHHHHh-------------CCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEEe
Confidence 99999999865 345 9999999999999999986532 2 3679999999 9999999999
Q ss_pred CCCCCCCHHHHHHHHHhh
Q psy15453 198 DLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 198 ~~~~~~~~~~il~~l~~l 215 (247)
+.+.+++..++.+.|++|
T Consensus 156 ~~~~g~~~~~~~~vl~~l 173 (173)
T 3mng_A 156 PDGTGLTCSLAPNIISQL 173 (173)
T ss_dssp TTSSCSSTTSHHHHHHHC
T ss_pred CCCCCcchHHHHHHHHhC
Confidence 888777777777777654
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=209.63 Aligned_cols=149 Identities=26% Similarity=0.339 Sum_probs=131.4
Q ss_pred cccccCCC----CCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 51 TNAVVMKP----APYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 51 ~~~~~G~~----~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
..+++|+. +|+|+++ |.+|++++|++++||++||+||+++||++|+.+++.|++++++|++++++||+|+.|+
T Consensus 19 ~~l~~Gd~ig~~aP~f~l~---~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~ 95 (179)
T 3ixr_A 19 SHMNIGDTLNHSLLNHPLM---LSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDS 95 (179)
T ss_dssp CSSCTTCBCCHHHHHCCEE---EGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCC
T ss_pred cccCcCcccCCcCCCeeEE---CCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 45777887 9999994 5599999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC--C----ccceeEEEEcCCCcEEEEEecCCC
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK--G----HSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~--g----~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
++..++|.+.+ +++|+++.|+++.+.+.||+..... | ...|++||||++|+|++++ ....
T Consensus 96 ~~~~~~~~~~~-------------~~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~-~~~~ 161 (179)
T 3ixr_A 96 VKSHDSFCAKQ-------------GFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAW-RQVK 161 (179)
T ss_dssp HHHHHHHHHHH-------------TCCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEE-CSCC
T ss_pred HHHHHHHHHHc-------------CCceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEE-cCCC
Confidence 99999999865 6799999999999999999975432 1 1369999999999999998 4556
Q ss_pred CCCCHHHHHHHHHhhh
Q psy15453 201 VGRSVEETLRLVRAFQ 216 (247)
Q Consensus 201 ~~~~~~~il~~l~~l~ 216 (247)
...+.+++++.|++++
T Consensus 162 ~~~~~~~il~~l~~l~ 177 (179)
T 3ixr_A 162 VPGHAEEVLNKLKAHA 177 (179)
T ss_dssp STTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6778899999999875
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=205.34 Aligned_cols=146 Identities=20% Similarity=0.309 Sum_probs=124.2
Q ss_pred cccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 49 GWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 49 ~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
....+++|+++|+|++ .|.+|+.++|++++||++||+||+++|||+|+.++|.|++++++| ++++||+||.|+++
T Consensus 13 ~~~~~~~G~~~P~f~l---~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~v~vv~Is~d~~~ 87 (165)
T 1q98_A 13 GGHFPQVGEIVENFIL---VGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SNTIVLCISADLPF 87 (165)
T ss_dssp ESCCCCTTCBCCCCEE---ECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TTEEEEEEESSCHH
T ss_pred ccccCCCCCCCCCeEE---ECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CCCEEEEEeCCCHH
Confidence 3446889999999999 566999999999999999999998999999999999999999999 59999999999877
Q ss_pred hHHHHHHHhhccccccccCCCCCc-ceeEEecC-CchHHHHhCCcccC---CCccceeEEEEcCCCcEEEEEec-CCCCC
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKL-KIPLLSDL-THEISRDYGVYLED---KGHSLRGLFIIDREGIVRQITLN-DLPVG 202 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~-~~~~~~~~~~~~~~---~g~~~p~~~lId~~G~v~~~~~~-~~~~~ 202 (247)
..++|.+. + ++ +|++++|+ ++.+++.||+.... .|...|++||||++|+|++.+.+ .....
T Consensus 88 ~~~~~~~~----------~---~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~ 154 (165)
T 1q98_A 88 AQARFCGA----------E---GIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEE 154 (165)
T ss_dssp HHTTCTTT----------T---TCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSC
T ss_pred HHHHHHHH----------c---CCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEeCCCCCCC
Confidence 66666553 2 56 79999998 79999999997532 24457999999999999999975 34567
Q ss_pred CCHHHHHHHH
Q psy15453 203 RSVEETLRLV 212 (247)
Q Consensus 203 ~~~~~il~~l 212 (247)
++++++++.|
T Consensus 155 ~~~~~~l~~l 164 (165)
T 1q98_A 155 PNYEAALAVL 164 (165)
T ss_dssp CCHHHHHHTT
T ss_pred CCHHHHHHhh
Confidence 7888888765
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-29 Score=201.92 Aligned_cols=148 Identities=26% Similarity=0.338 Sum_probs=128.8
Q ss_pred cccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 49 GWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 49 ~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
....+.+|+++|+|++ .|.+|+.+++++++||++||+||+++|||+|+.+++.|++++++| +++++|+||.|+++
T Consensus 17 ~~~~l~~g~~~P~f~l---~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~v~vv~Is~d~~~ 91 (171)
T 2yzh_A 17 VGPELKVGDRAPEAVV---VTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EGVDVTVVSMDLPF 91 (171)
T ss_dssp CSCCCCTTSBCCCEEE---EETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHH
T ss_pred cCCcCCCCCcCCceEE---ECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CCceEEEEeCCCHH
Confidence 3346889999999999 556999999999999999999998899999999999999999999 59999999999999
Q ss_pred hHHHHHHHhhccccccccCCCCCc-ceeEEec-CCchHHHHhCCcccC---CCccceeEEEEcCCCcEEEEEecCC-CCC
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKL-KIPLLSD-LTHEISRDYGVYLED---KGHSLRGLFIIDREGIVRQITLNDL-PVG 202 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D-~~~~~~~~~~~~~~~---~g~~~p~~~lId~~G~v~~~~~~~~-~~~ 202 (247)
..++|.+.+ +. +|+++.| ++..+ +.||+.... .|...|++||||++|+|++.+.++. ...
T Consensus 92 ~~~~~~~~~-------------~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~ 157 (171)
T 2yzh_A 92 AQKRFCESF-------------NIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQLVPEITEE 157 (171)
T ss_dssp HHHHHHHHT-------------TCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSC
T ss_pred HHHHHHHHc-------------CCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEeCCCcCCC
Confidence 888888854 56 8999999 78899 999997543 2456799999999999999997643 356
Q ss_pred CCHHHHHHHHHhh
Q psy15453 203 RSVEETLRLVRAF 215 (247)
Q Consensus 203 ~~~~~il~~l~~l 215 (247)
.+.+++++.|+++
T Consensus 158 ~~~~~ll~~l~~l 170 (171)
T 2yzh_A 158 PNYDEVVNKVKEL 170 (171)
T ss_dssp CCCHHHHHHHHHC
T ss_pred CCHHHHHHHHHhh
Confidence 6789999999876
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=207.20 Aligned_cols=148 Identities=20% Similarity=0.298 Sum_probs=128.0
Q ss_pred ccccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 48 EGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 48 ~~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
.....+++|+++|+|++ .|.+|+.++|++++||++||+||+++||++|+.+++.|++++++| ++++||+||.|++
T Consensus 47 ~~~~~l~~G~~aPdf~l---~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~v~vv~Is~D~~ 121 (200)
T 3zrd_A 47 VAGKLPQIGDKAKDFTL---VAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--ENTVVLCISSDLP 121 (200)
T ss_dssp EESCCCCTTCBCCCCEE---ECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TTEEEEEEESSCH
T ss_pred eecccCCCCCCCCCeEE---ECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CCCEEEEEECCCH
Confidence 34456899999999999 566999999999999999999998899999999999999999999 5899999999998
Q ss_pred HhHHHHHHHhhccccccccCCCCCc-ceeEEecC-CchHHHHhCCcccC---CCccceeEEEEcCCCcEEEEEecC-CCC
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKL-KIPLLSDL-THEISRDYGVYLED---KGHSLRGLFIIDREGIVRQITLND-LPV 201 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~-~~~~~~~~~~~~~~---~g~~~p~~~lId~~G~v~~~~~~~-~~~ 201 (247)
+..++|.+.. ++ +|++++|. ++.+++.||+.... .|...|++||||++|+|++.+.+. ...
T Consensus 122 ~~~~~~~~~~-------------~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~~~ 188 (200)
T 3zrd_A 122 FAQSRFCGAE-------------GLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSELVNEITT 188 (200)
T ss_dssp HHHTTCTTTT-------------TCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTS
T ss_pred HHHHHHHHHc-------------CCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEEecCCccc
Confidence 8776666532 57 99999999 89999999998544 345679999999999999998654 567
Q ss_pred CCCHHHHHHHHH
Q psy15453 202 GRSVEETLRLVR 213 (247)
Q Consensus 202 ~~~~~~il~~l~ 213 (247)
.++++++++.|+
T Consensus 189 ~~~~~~~l~~Lk 200 (200)
T 3zrd_A 189 EPNYDAALAALK 200 (200)
T ss_dssp CCCHHHHHHHHC
T ss_pred CCCHHHHHHhhC
Confidence 788898888763
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=200.20 Aligned_cols=146 Identities=25% Similarity=0.341 Sum_probs=123.0
Q ss_pred ccccCCCCCCceeeeeecCCc--eeEEcCC-CCCCeEEEEEEeCCCCCCcH-HHHHHHHHHHHHHHhcCcE-EEEEeCCC
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNI--KEIKLTD-YRGKYLVFFFYPLDFTFVCP-TEVLALNEKIDEFHKIGAE-VVGVSVDS 126 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G--~~v~l~~-~~gk~vvl~F~~a~~Cp~C~-~~~~~l~~l~~~~~~~~~~-vl~Vs~d~ 126 (247)
.+++|+++|+|+++. .|.+| ++++|++ ++||++||+||+++|||+|+ .++|.|++++++|+++|++ ||+||.|+
T Consensus 3 ~~~~G~~aP~f~l~~-~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~ 81 (162)
T 1tp9_A 3 PIAVGDVLPDGKLAY-FDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVND 81 (162)
T ss_dssp CCCTTCBCCCCEEEE-ECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred cCCCCCCCCCeEEEe-ecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Confidence 478999999999842 26799 9999999 89999999999999999999 9999999999999988999 99999999
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccC--CC---ccceeEEEEcCCCcEEEEEecCCCC
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLED--KG---HSLRGLFIIDREGIVRQITLNDLPV 201 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~--~g---~~~p~~~lId~~G~v~~~~~~~~~~ 201 (247)
++.+++|.+++ ++.+ +|++++|+++.+++.||+.... .| ...|++|||| +|+|++.+.++ +.
T Consensus 82 ~~~~~~~~~~~----------~~~~-~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~~~~-~~ 148 (162)
T 1tp9_A 82 PFVMKAWAKSY----------PENK-HVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEG-GG 148 (162)
T ss_dssp HHHHHHHHHTC----------TTCS-SEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECS-SS
T ss_pred HHHHHHHHHhc----------CCCC-CeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEEeeC-CC
Confidence 99999998843 2211 8999999999999999997542 13 1479999999 99999999877 43
Q ss_pred CC---CHHHHHHH
Q psy15453 202 GR---SVEETLRL 211 (247)
Q Consensus 202 ~~---~~~~il~~ 211 (247)
+. +.+++++.
T Consensus 149 ~~~~~~~~~vl~~ 161 (162)
T 1tp9_A 149 EFTVSSAEDILKD 161 (162)
T ss_dssp CCSSCSHHHHHTT
T ss_pred CCccCCHHHHHhh
Confidence 32 56776643
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-29 Score=196.14 Aligned_cols=148 Identities=30% Similarity=0.512 Sum_probs=132.1
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHR 131 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk-~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~ 131 (247)
+.+|+++|+|++ .|.+|+.+++++++|| ++||+||+++||++|+.+++.|++++++|+++++++++|+.|+.+..+
T Consensus 9 ~~~G~~~p~f~l---~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~ 85 (160)
T 1xvw_A 9 LNVGATAPDFTL---RDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHK 85 (160)
T ss_dssp CCTTSBCCCCEE---ECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHH
T ss_pred CCCCCCCCCeEe---EcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHH
Confidence 889999999999 5669999999999998 999999889999999999999999999998789999999999999889
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecC--CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDL--THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~--~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
+|.+.+ +.+|+++.|. ++.+.+.||+.....++..|++||||++|+|++.+.|..+...++++++
T Consensus 86 ~~~~~~-------------~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~ 152 (160)
T 1xvw_A 86 IWATQS-------------GFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWT 152 (160)
T ss_dssp HHHHHH-------------TCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHH
T ss_pred HHHHhc-------------CCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHH
Confidence 988865 5789999995 8899999999755444434499999999999999988877777899999
Q ss_pred HHHHhhh
Q psy15453 210 RLVRAFQ 216 (247)
Q Consensus 210 ~~l~~l~ 216 (247)
+.|++++
T Consensus 153 ~~l~~l~ 159 (160)
T 1xvw_A 153 DALAALT 159 (160)
T ss_dssp HHHHHTC
T ss_pred HHHHHhc
Confidence 9998875
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-29 Score=209.07 Aligned_cols=162 Identities=16% Similarity=0.175 Sum_probs=132.3
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCCCCCe-EEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC-----
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKY-LVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV----- 124 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~-vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~----- 124 (247)
..+++|+++|+|++ .|.+|+.+++++++||+ +||+|| ++|||+|+.++|.|++++++|++++++||+|+.
T Consensus 30 ~~l~~G~~aP~f~l---~~~~G~~v~l~~~~gk~~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~ 105 (218)
T 3u5r_E 30 NSITLGTRAADFVL---PDAGGNLFTLAEFKDSPALLVAFI-SNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQA 105 (218)
T ss_dssp CCCCTTCBCCCCCE---ECTTCCEECGGGGTTCSEEEEEEC-CSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTT
T ss_pred CcCCCCCcCCCcEe---ECCCCCEEeHHHhCCCCeEEEEEE-CCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccc
Confidence 46899999999999 56699999999999995 999999 999999999999999999999988999999999
Q ss_pred ---CChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC-
Q psy15453 125 ---DSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP- 200 (247)
Q Consensus 125 ---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~- 200 (247)
|+++..++|.+.. +++|+++.|.+..+.+.|++. .+|++||||++|+|++.......
T Consensus 106 ~~~d~~~~~~~~~~~~-------------~~~~~~l~D~~~~~~~~~~v~------~~P~~~liD~~G~i~~~g~~d~~~ 166 (218)
T 3u5r_E 106 FPEETLERVGAEVKAY-------------GYGFPYLKDASQSVAKAYGAA------CTPDFFLYDRERRLVYHGQFDDAR 166 (218)
T ss_dssp CGGGSHHHHHHHHHHH-------------TCCSCEEECTTCHHHHHHTCC------EESEEEEECTTCBEEEEECSSSCC
T ss_pred cccCCHHHHHHHHHHh-------------CCCccEEECCccHHHHHcCCC------CCCeEEEECCCCcEEEeccccccc
Confidence 5667778887754 679999999999999999999 89999999999999977522111
Q ss_pred ----CCCCHHHHHHHHHhhhcc------cccCCccCCCCcCCCcc
Q psy15453 201 ----VGRSVEETLRLVRAFQYT------DEHGEACPSGWQPGQRT 235 (247)
Q Consensus 201 ----~~~~~~~il~~l~~l~~~------~~~~~~~~~~~~~~~~~ 235 (247)
.....+++.+.|+++... ..+..+|+.+|.+|+++
T Consensus 167 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~GC~i~w~~~~~~ 211 (218)
T 3u5r_E 167 PGNGKDVTGADLRAAVDAVLKGKDVGTTQVPSIGCNIKWTAGNEP 211 (218)
T ss_dssp TTSCCCCCCHHHHHHHHHHHTTCCCCSCCCCCEEEECCCCCC---
T ss_pred cccccccCHHHHHHHHHHHHcCCCCCcCCcCCCCeeEEeCCCCCC
Confidence 122346666666665432 22367899999999773
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-29 Score=198.88 Aligned_cols=147 Identities=17% Similarity=0.222 Sum_probs=122.1
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHHHhcCc-EEEEEeCCChH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPT-EVLALNEKIDEFHKIGA-EVVGVSVDSHF 128 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~-~~~~l~~l~~~~~~~~~-~vl~Vs~d~~~ 128 (247)
.+++|+++|+|+++ .|.+|+.++|+++ +||++||+||+++|||+|+. |+|.|++++++|+++|+ +||+||.|+++
T Consensus 2 ~l~~G~~aP~f~l~--~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~ 79 (167)
T 2wfc_A 2 PIKEGDKLPAVTVF--GATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSF 79 (167)
T ss_dssp CCCTTCBCCCCEEE--SSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHH
T ss_pred CCCCCCcCCCcEee--cCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHH
Confidence 46789999999994 0669999999999 99999999998999999999 99999999999999999 99999999999
Q ss_pred hHHHHHHHhhccccccccCCCCCcc--eeEEecCCchHHHHhCCcccCC---C--ccceeEEEEcCCCcEEEEEecCCCC
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLK--IPLLSDLTHEISRDYGVYLEDK---G--HSLRGLFIIDREGIVRQITLNDLPV 201 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~~~~~~~~---g--~~~p~~~lId~~G~v~~~~~~~~~~ 201 (247)
..++|.++. +++ |++++|+++++++.||+..... | ...|++||| ++|+|++.+.++...
T Consensus 80 ~~~~~~~~~-------------~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~~~~~~~ 145 (167)
T 2wfc_A 80 VMDAWGKAH-------------GADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVNVEPDGK 145 (167)
T ss_dssp HHHHHHHHT-------------TCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEEECTTSS
T ss_pred HHHHHHHhc-------------CCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEEecCCCC
Confidence 999998854 455 9999999999999999974310 1 135999999 999999999877654
Q ss_pred CCCHHHHHHHHHh
Q psy15453 202 GRSVEETLRLVRA 214 (247)
Q Consensus 202 ~~~~~~il~~l~~ 214 (247)
..++...-..|+.
T Consensus 146 ~~~~~~~~~~~~~ 158 (167)
T 2wfc_A 146 GLTCSLAPNILSQ 158 (167)
T ss_dssp SSSTTSHHHHHHH
T ss_pred cceeccHHHHHHH
Confidence 4444333333333
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=198.45 Aligned_cols=159 Identities=15% Similarity=0.237 Sum_probs=129.9
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC------
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV------ 124 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~------ 124 (247)
..+.+|+++|+|++ .|.+|+.+++++++||++||+|| ++||++|+.+++.|++++++|+++ ++||+|+.
T Consensus 5 ~~~~~g~~~p~f~l---~~~~G~~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~ 79 (188)
T 2cvb_A 5 PELPLESPLIDAEL---PDPRGGRYRLSQFHEPLLAVVFM-CNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKY 79 (188)
T ss_dssp CCCCTTCBCCCCEE---ECTTSCEEEGGGCCSSEEEEEEE-CSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTC
T ss_pred CcCCCCCCCCCcee---ecCCCCEEeHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCccccc
Confidence 36789999999999 56699999999999999999999 999999999999999999999977 99999998
Q ss_pred --CChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCC-
Q psy15453 125 --DSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPV- 201 (247)
Q Consensus 125 --d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~- 201 (247)
|+.+..++|.+.+ +++|+++.|.+..+.+.|++. .+|++||||++|+|++. |..+.
T Consensus 80 ~~d~~~~~~~~~~~~-------------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~--g~~~~~ 138 (188)
T 2cvb_A 80 PEDAPEKMAAFAEEH-------------GIFFPYLLDETQEVAKAYRAL------RTPEVFLFDERRLLRYH--GRVNDN 138 (188)
T ss_dssp GGGSHHHHHHHHHHH-------------TCCSCEEECSSSHHHHHTTCC------EESEEEEECTTCBEEEE--ECSSSC
T ss_pred cccCHHHHHHHHHHh-------------CCCceEEECCcchHHHHcCCC------CCCeEEEECCCCcEEEE--EecCCc
Confidence 4556777777754 578999999999999999998 89999999999999988 33211
Q ss_pred -----CCCHHHHHHHHHhhhcc------cccCCccCCCCcCCCcc
Q psy15453 202 -----GRSVEETLRLVRAFQYT------DEHGEACPSGWQPGQRT 235 (247)
Q Consensus 202 -----~~~~~~il~~l~~l~~~------~~~~~~~~~~~~~~~~~ 235 (247)
..+.+++.+.|+.+... ..+..+|+.+|.||.++
T Consensus 139 ~~~~g~~~~~~l~~~i~~ll~~~~~~~~~~~~~gc~~~~~~~~~~ 183 (188)
T 2cvb_A 139 PKDPSKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRPGNEP 183 (188)
T ss_dssp TTCGGGCCCCHHHHHHHHHHTTCCCCSSCCCCCSEECCCCTTCCC
T ss_pred cccccccCHHHHHHHHHHHHcCCCCCcccCCCCceEEEecCCCCC
Confidence 01234445555444332 22468999999999875
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=204.15 Aligned_cols=150 Identities=14% Similarity=0.071 Sum_probs=130.6
Q ss_pred ccccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcH-----HHHHHHHHHHHHHHhcCcEEEEE
Q psy15453 48 EGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCP-----TEVLALNEKIDEFHKIGAEVVGV 122 (247)
Q Consensus 48 ~~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~-----~~~~~l~~l~~~~~~~~~~vl~V 122 (247)
.....+++|+++|+|+| .|.+|+.++|++++||++||+||++.|||+|. .+++.|+++ | +|++||+|
T Consensus 17 ~~g~~l~vG~~APdFtL---~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~gv~VvgI 88 (224)
T 3keb_A 17 VIGDFPRKGDYLPSFML---VDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PHLKLIVI 88 (224)
T ss_dssp CBSCCCCTTCBCCCCEE---EETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TTSEEEEE
T ss_pred eecCcCCCCCCCCCeEE---ECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CCCEEEEE
Confidence 44557899999999999 55699999999999999999999777799999 999999888 4 58999999
Q ss_pred eCCChHhHHHHHHHhhccccccccCCCCCc-ceeEEecC-CchHHHHhCCcccC---CCccceeEEEEcCCCcEEEEEec
Q psy15453 123 SVDSHFTHRAWINSLKKDNSLKKDNRLDKL-KIPLLSDL-THEISRDYGVYLED---KGHSLRGLFIIDREGIVRQITLN 197 (247)
Q Consensus 123 s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~-~~~~~~~~~~~~~~---~g~~~p~~~lId~~G~v~~~~~~ 197 (247)
|.|+++.+++|.+++ ++ +|++++|. ++.+++.||+...+ .|+..|++||||++|+|++.+..
T Consensus 89 S~Ds~~~~~~f~~~~-------------gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~ 155 (224)
T 3keb_A 89 TVDSPSSLARARHEH-------------GLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERL 155 (224)
T ss_dssp ESSCHHHHHHHHHHH-------------CCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEEC
T ss_pred ECCCHHHHHHHHHHc-------------CCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEec
Confidence 999999999999965 56 79999998 69999999998654 35668999999999999999865
Q ss_pred CC-CCCCCHHHHHHHHHhhhcc
Q psy15453 198 DL-PVGRSVEETLRLVRAFQYT 218 (247)
Q Consensus 198 ~~-~~~~~~~~il~~l~~l~~~ 218 (247)
.. ...++.+++++.|+.++..
T Consensus 156 ~~~~~~pd~~evl~~L~~l~~~ 177 (224)
T 3keb_A 156 ANTRDFFDFDAIEKLLQEGEQQ 177 (224)
T ss_dssp SBTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHhhhc
Confidence 54 4568899999999998764
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-29 Score=200.20 Aligned_cols=146 Identities=21% Similarity=0.301 Sum_probs=123.1
Q ss_pred cccccCCCCCCceeeeeecCCc-eeEEcCC-CCCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHHHhcCcE-EEEEeCCC
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNI-KEIKLTD-YRGKYLVFFFYPLDFTFVCPT-EVLALNEKIDEFHKIGAE-VVGVSVDS 126 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G-~~v~l~~-~~gk~vvl~F~~a~~Cp~C~~-~~~~l~~l~~~~~~~~~~-vl~Vs~d~ 126 (247)
..+++|+++|+|+++++ ..+| ++++|++ ++||++||+||+++|||+|+. |+|.|++++++|+++|++ |++||.|+
T Consensus 24 ~~l~vG~~aPdf~l~~~-~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~ 102 (184)
T 3uma_A 24 MTIAVGDKLPNATFKEK-TADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVND 102 (184)
T ss_dssp SCCCTTCBCCCCEEEEE-ETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSC
T ss_pred CcCCCCCCCCCcEeecc-cCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 35899999999999653 2378 9999999 899988888887999999999 899999999999999999 99999999
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcc--eeEEecCCchHHHHhCCcccCC--Cc---cceeEEEEcCCCcEEEEEecCC
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLK--IPLLSDLTHEISRDYGVYLEDK--GH---SLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~~~~~~~~--g~---~~p~~~lId~~G~v~~~~~~~~ 199 (247)
++..++|.++. +++ |++++|++++++++||+..... |+ ..|++|||| +|+|++++.++.
T Consensus 103 ~~~~~~f~~~~-------------~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~~~~ 168 (184)
T 3uma_A 103 LHVMGAWATHS-------------GGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNIEES 168 (184)
T ss_dssp HHHHHHHHHHH-------------TCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEECSS
T ss_pred HHHHHHHHHHh-------------CCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEEeCC
Confidence 99999999865 456 9999999999999999975431 22 458899997 999999998875
Q ss_pred CC---CCCHHHHHHH
Q psy15453 200 PV---GRSVEETLRL 211 (247)
Q Consensus 200 ~~---~~~~~~il~~ 211 (247)
+. ..+.+++++.
T Consensus 169 ~g~~~~~~~~~vL~~ 183 (184)
T 3uma_A 169 PGQATASGAAAMLEL 183 (184)
T ss_dssp TTCCSTTSHHHHHHH
T ss_pred CCCCcCCCHHHHHhh
Confidence 43 3556666554
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=198.04 Aligned_cols=160 Identities=18% Similarity=0.196 Sum_probs=132.2
Q ss_pred cccccCCCCCCceeeeee-cCCceeEEcCCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC----
Q psy15453 51 TNAVVMKPAPYWKGTAVV-DGNIKEIKLTDYRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV---- 124 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~-d~~G~~v~l~~~~gk-~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~---- 124 (247)
..+.+|+++|+|++ . +.+|+.+++++++|| ++||+|| ++||++|+.++|.|++++++|++++++|++|+.
T Consensus 16 ~~~~~g~~~p~f~l---~~~~~G~~~~l~~~~gk~~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~ 91 (196)
T 2ywi_A 16 NMFPLGKQAPPFAL---TNVIDGNVVRLEDVKSDAATVIMFI-CNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAE 91 (196)
T ss_dssp CCCCTTCBCCCCEE---EETTTCCEEEHHHHCCSSEEEEEEC-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTT
T ss_pred cCCCcCCcCCceee---eecCCCCEEeHHHhCCCCeEEEEEe-CCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccc
Confidence 35789999999998 5 669999999999999 5999999 999999999999999999999988999999998
Q ss_pred ----CChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC-
Q psy15453 125 ----DSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL- 199 (247)
Q Consensus 125 ----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~- 199 (247)
|+.+..++|.+.+ +.+|+++.|.+..+.+.|++. .+|++||||++|+|++.+.+..
T Consensus 92 ~~~~d~~~~~~~~~~~~-------------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~ 152 (196)
T 2ywi_A 92 QYPEDSPENMKKVAEEL-------------GYPFPYLYDETQEVAKAYDAA------CTPDFYIFDRDLKCVYRGQLDDS 152 (196)
T ss_dssp TCGGGSHHHHHHHHHHH-------------TCCSCEEECSSCHHHHHHTCC------EESEEEEEETTCBEEEEECSSSC
T ss_pred cccccCHHHHHHHHHHc-------------CCCceEEECCchHHHHHhCCC------CCCeEEEEcCCCeEEEccccCcc
Confidence 4566777777754 578999999999999999998 8999999999999999864221
Q ss_pred ----CCCCCHHHHHHHHHhhhcc------cccCCccCCCCcCCC
Q psy15453 200 ----PVGRSVEETLRLVRAFQYT------DEHGEACPSGWQPGQ 233 (247)
Q Consensus 200 ----~~~~~~~~il~~l~~l~~~------~~~~~~~~~~~~~~~ 233 (247)
....+.+++.+.|+.+... ..+..+|+.+|.||+
T Consensus 153 ~~~~~g~~~~~~l~~~i~~ll~~~~~~~~~~~~~gC~~~~~~~~ 196 (196)
T 2ywi_A 153 RPNNGIPVTGESIRAALDALLEGRPVPEKQKPSIGCSIKWKPSA 196 (196)
T ss_dssp CTTTCCCCCCHHHHHHHHHHHHTCCCCSCCCCCEEEECCCCCCC
T ss_pred cccccCccCHHHHHHHHHHHHcCCCCCCCCCCCCceeeeeccCC
Confidence 1122346666666655432 224689999999985
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-28 Score=201.96 Aligned_cols=149 Identities=21% Similarity=0.382 Sum_probs=128.7
Q ss_pred ccccCCCCCCceeeeeecCCce--eEEcCC-CCCCeEEEEEEeCCCCCCcH-HHHHHHHHHHHHHHhcCc-EEEEEeCCC
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIK--EIKLTD-YRGKYLVFFFYPLDFTFVCP-TEVLALNEKIDEFHKIGA-EVVGVSVDS 126 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~--~v~l~~-~~gk~vvl~F~~a~~Cp~C~-~~~~~l~~l~~~~~~~~~-~vl~Vs~d~ 126 (247)
.+.+|+++|+|+++++. +|+ .++|++ ++||++||+||+++|||+|+ .|+|.|++++++|+++|+ +|++||.|+
T Consensus 2 ~~~~G~~aP~f~l~~~~--~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~ 79 (241)
T 1nm3_A 2 SSMEGKKVPQVTFRTRQ--GDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVND 79 (241)
T ss_dssp -CCTTSBCCCCEEEEEE--TTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSC
T ss_pred CccCCCCCCCeEEEccc--CCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCC
Confidence 46789999999996542 456 999999 89999999999999999999 999999999999999999 999999999
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcc-eeEEecCCchHHHHhCCcccCC--Cc---cceeEEEEcCCCcEEEEEecCCC
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLK-IPLLSDLTHEISRDYGVYLEDK--GH---SLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~D~~~~~~~~~~~~~~~~--g~---~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
++.+++|.++. +.+ |++++|+++.+++.||+..... |. ..|++||| ++|+|++.+.+...
T Consensus 80 ~~~~~~~~~~~-------------~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~~~ 145 (241)
T 1nm3_A 80 TFVMNAWKEDE-------------KSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEPNE 145 (241)
T ss_dssp HHHHHHHHHHT-------------TCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEECCSC
T ss_pred HHHHHHHHHhc-------------CCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEEeccC
Confidence 99999998854 454 9999999999999999975432 33 46899999 99999999988765
Q ss_pred CC-----CCHHHHHHHHHhhh
Q psy15453 201 VG-----RSVEETLRLVRAFQ 216 (247)
Q Consensus 201 ~~-----~~~~~il~~l~~l~ 216 (247)
.+ .+.+++++.|+...
T Consensus 146 ~~~~~~~~~~~~il~~l~~~~ 166 (241)
T 1nm3_A 146 PGDPFKVSDADTMLKYLAPQH 166 (241)
T ss_dssp SSCCCSSSSHHHHHHHHCTTS
T ss_pred CCccceecCHHHHHHHhhhhc
Confidence 54 68999999998754
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-28 Score=191.29 Aligned_cols=148 Identities=22% Similarity=0.346 Sum_probs=126.1
Q ss_pred ccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCC-CCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 50 WTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF-TFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 50 ~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~-Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
...+.+|+++|+|++ .|.+|+.+++++++||++||+|| ++| |++|+.++|.|++++++| .++++|+|+.|+++
T Consensus 15 ~~~~~~G~~~p~f~l---~~~~G~~~~l~~~~gk~~vl~F~-~~~~C~~C~~~~~~l~~l~~~~--~~~~vv~is~d~~~ 88 (167)
T 2jsy_A 15 GQEVKVGDQAPDFTV---LTNSLEEKSLADMKGKVTIISVI-PSIDTGVCDAQTRRFNEEAAKL--GDVNVYTISADLPF 88 (167)
T ss_dssp SCCCCTTSCCCCCEE---EBTTCCEEEHHHHTTSCEEEEEC-SCSTTSHHHHTHHHHHHHHHHH--SSCEEEEEECSSGG
T ss_pred cCccCCCCcCCceEE---ECCCCCEeeHHHhCCCeEEEEEe-cCCCCCchHHHHHHHHHHHHHc--CCCEEEEEECCCHH
Confidence 346889999999999 56699999999999999999999 887 999999999999999999 58999999999876
Q ss_pred hHHHHHHHhhccccccccCCCCCc-ceeEEec-CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC-CCCCCH
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKL-KIPLLSD-LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL-PVGRSV 205 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D-~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~-~~~~~~ 205 (247)
..++|.+ .+ +. +|+++.| .++.+.+.|++.....|+..|++||||++|+|++.+.+.. ....+.
T Consensus 89 ~~~~~~~----------~~---~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~ 155 (167)
T 2jsy_A 89 AQARWCG----------AN---GIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNY 155 (167)
T ss_dssp GTSCCGG----------GS---SCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCS
T ss_pred HHHHHHH----------hc---CCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCH
Confidence 6555555 33 45 8999999 8899999999985544555799999999999999997653 345577
Q ss_pred HHHHHHHHhhh
Q psy15453 206 EETLRLVRAFQ 216 (247)
Q Consensus 206 ~~il~~l~~l~ 216 (247)
+++++.|+++.
T Consensus 156 ~~l~~~l~~ll 166 (167)
T 2jsy_A 156 EKPIEAAKALV 166 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998774
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-28 Score=191.73 Aligned_cols=144 Identities=22% Similarity=0.287 Sum_probs=119.0
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCC--eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGK--YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk--~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
.+.+|+++|+|++ .|.+|+++++++++|| ++||+||+++|||+|+.++|.|++++++|++++ +||+||.|+++.
T Consensus 6 ~~~~G~~~P~f~l---~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~ 81 (159)
T 2a4v_A 6 ELEIGDPIPDLSL---LNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTS 81 (159)
T ss_dssp CCCTTCBCCSCEE---ECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHH
T ss_pred cCCCCCCCCCeEE---ECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHH
Confidence 5788999999999 5669999999999987 899999889999999999999999999999888 999999999998
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
.++|.+.+ +.+|+++.|.++.+.+.||+.........|++||| ++|+|++.+.+..+ ..+.++++
T Consensus 82 ~~~~~~~~-------------~~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~~g~~~-~~~~~~~~ 146 (159)
T 2a4v_A 82 QKKFQSKQ-------------NLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKRVKISP-EVSVNDAK 146 (159)
T ss_dssp HHHHHHHH-------------TCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEEESCCH-HHHHHHHH
T ss_pred HHHHHHHh-------------CCCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEEccCCc-cccHHHHH
Confidence 99998864 57899999999999999999833211134599999 99999999866433 22234444
Q ss_pred HHHHh
Q psy15453 210 RLVRA 214 (247)
Q Consensus 210 ~~l~~ 214 (247)
+.|+.
T Consensus 147 ~~l~~ 151 (159)
T 2a4v_A 147 KEVLE 151 (159)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=189.18 Aligned_cols=148 Identities=25% Similarity=0.363 Sum_probs=122.3
Q ss_pred ccccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCC-CCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 48 EGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF-TFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 48 ~~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~-Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
.....+.+|+++|+|++ .|.+|+.+++++++||++||+|| ++| |++|+.++|.|++++++ .+++||+|+.|+
T Consensus 13 ~~~~~l~~G~~~P~f~l---~~~~G~~v~l~~~~gk~vvl~F~-~t~~C~~C~~~~~~l~~l~~~---~~v~vv~Is~D~ 85 (175)
T 1xvq_A 13 TVGELPAVGSPAPAFTL---TGGDLGVISSDQFRGKSVLLNIF-PSVDTPVCATSVRTFDERAAA---SGATVLCVSKDL 85 (175)
T ss_dssp BSSCCCCTTSBCCCCEE---ECTTSCEEEGGGGTTSCEEEEEC-SCCCSSCCCHHHHHHHHHHHH---TTCEEEEEESSC
T ss_pred ecCCCCCcCCcCCCeEE---ECCCCCEEeHHHcCCCEEEEEEE-eCCCCchHHHHHHHHHHHHhh---cCCEEEEEECCC
Confidence 44456889999999999 56699999999999999999999 777 99999999999999988 589999999999
Q ss_pred hHhHHHHHHHhhccccccccCCCCCc-ceeEEecCCchHHHHhCCcccC---CCccceeEEEEcCCCcEEEEEec-CCCC
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKL-KIPLLSDLTHEISRDYGVYLED---KGHSLRGLFIIDREGIVRQITLN-DLPV 201 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~~~~~~---~g~~~p~~~lId~~G~v~~~~~~-~~~~ 201 (247)
++..++|.+.. ++ +|+++.|++..+.+.|++.... .|...|++||||++|+|++.+.+ ....
T Consensus 86 ~~~~~~~~~~~-------------~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~ 152 (175)
T 1xvq_A 86 PFAQKRFCGAE-------------GTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQ 152 (175)
T ss_dssp HHHHTTCC-------------------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTC
T ss_pred HHHHHHHHHHc-------------CCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEEECCCcCC
Confidence 87766666532 45 8999999999999999997432 24456999999999999999974 4456
Q ss_pred CCCHHHHHHHHHhh
Q psy15453 202 GRSVEETLRLVRAF 215 (247)
Q Consensus 202 ~~~~~~il~~l~~l 215 (247)
..+++++++.+++-
T Consensus 153 ~~~~~~~l~~l~~~ 166 (175)
T 1xvq_A 153 EPNYEAALAALGAT 166 (175)
T ss_dssp CCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhh
Confidence 67888888888743
|
| >4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-27 Score=186.46 Aligned_cols=148 Identities=22% Similarity=0.308 Sum_probs=124.5
Q ss_pred cccccCCCCCCceeeeeec-------CCceeEEcCCC-CCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHHHhcCc-EEE
Q psy15453 51 TNAVVMKPAPYWKGTAVVD-------GNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPT-EVLALNEKIDEFHKIGA-EVV 120 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d-------~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~-~~~~l~~l~~~~~~~~~-~vl 120 (247)
..+++|+++|++++..+.+ +..++++|+++ +||++||+|||++|||+|.. |++.+++.+++|+++|+ +|+
T Consensus 8 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~Vi 87 (176)
T 4f82_A 8 HMIQVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIW 87 (176)
T ss_dssp CCCCTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhhhcCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEE
Confidence 4578999999999988766 45588999997 99999999988999999999 99999999999999999 999
Q ss_pred EEeCCChHhHHHHHHHhhccccccccCCCCCcc--eeEEecCCchHHHHhCCcccC--CCc---cceeEEEEcCCCcEEE
Q psy15453 121 GVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLK--IPLLSDLTHEISRDYGVYLED--KGH---SLRGLFIIDREGIVRQ 193 (247)
Q Consensus 121 ~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~~~~~~~--~g~---~~p~~~lId~~G~v~~ 193 (247)
+||.|+++.+++|.++. +++ |++++|++++++++||+..+. .|+ ..|.+||| ++|+|++
T Consensus 88 gIS~D~~~~~~~f~~~~-------------~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~ 153 (176)
T 4f82_A 88 CVSVNDAFVMGAWGRDL-------------HTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKT 153 (176)
T ss_dssp EEESSCHHHHHHHHHHT-------------TCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEE
T ss_pred EEeCCCHHHHHHHHHHh-------------CCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEE
Confidence 99999999999999864 344 999999999999999998664 232 35899999 9999999
Q ss_pred EEecCCC--CCCCHHHHHHHH
Q psy15453 194 ITLNDLP--VGRSVEETLRLV 212 (247)
Q Consensus 194 ~~~~~~~--~~~~~~~il~~l 212 (247)
++.++.. ...+.+++++.|
T Consensus 154 ~~~~~~~~~~~~~a~~vL~~L 174 (176)
T 4f82_A 154 LAVEAPGKFEVSDAASVLATL 174 (176)
T ss_dssp EEECCTTCCSSSSHHHHHHTC
T ss_pred EEEcCCCCcchhhHHHHHHHh
Confidence 9987633 123445555443
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=178.54 Aligned_cols=135 Identities=16% Similarity=0.282 Sum_probs=117.2
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcC--CCCCCeEEEEEEeCCCCCC--cHHHHHHHHHHHHHH-HhcCcEEEEEeCCC
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLT--DYRGKYLVFFFYPLDFTFV--CPTEVLALNEKIDEF-HKIGAEVVGVSVDS 126 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~--~~~gk~vvl~F~~a~~Cp~--C~~~~~~l~~l~~~~-~~~~~~vl~Vs~d~ 126 (247)
.+++|+++|+|++ .|.+|+.++++ +++||++||+|| ++||++ |+.++|.|++++++| +++++++++|+.|.
T Consensus 4 ~l~~G~~~p~f~l---~~~~g~~~~l~~~~~~gk~vll~F~-a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~ 79 (150)
T 3fw2_A 4 KSEIGKYAPFFSL---PNAKGEKITRSSDAFKQKSLLINFW-ASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDV 79 (150)
T ss_dssp TTSTTSBCCCCCE---EBTTCCEECTTSTTTTTSEEEEEEE-CTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCS
T ss_pred cccCCCcCCccEe---ECCCCCEEecchhhhCCCEEEEEEE-eCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCC
Confidence 5789999999999 55699999999 999999999999 999999 999999999999999 77789999999986
Q ss_pred h-HhHHHHHHHhhccccccccCCCCCcceeEEecC---CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCC
Q psy15453 127 H-FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL---THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVG 202 (247)
Q Consensus 127 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~---~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~ 202 (247)
. +..+++.+.+ +.+|+++.|. +..+.+.|++. .+|++||||++|+|++.+.
T Consensus 80 ~~~~~~~~~~~~-------------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~------ 134 (150)
T 3fw2_A 80 DKQQWKDAIKRD-------------TLDWEQVCDFGGLNSEVAKQYSIY------KIPANILLSSDGKILAKNL------ 134 (150)
T ss_dssp CHHHHHHHHHHT-------------TCCSEEECCSCGGGCHHHHHTTCC------SSSEEEEECTTSBEEEESC------
T ss_pred CHHHHHHHHHHh-------------CCCceEEEcCcccchHHHHHcCCC------ccCeEEEECCCCEEEEccC------
Confidence 4 5666666643 6799999998 57999999999 8999999999999999863
Q ss_pred CCHHHHHHHHHhhh
Q psy15453 203 RSVEETLRLVRAFQ 216 (247)
Q Consensus 203 ~~~~~il~~l~~l~ 216 (247)
+.+++.+.|+.+.
T Consensus 135 -~~~~l~~~l~~ll 147 (150)
T 3fw2_A 135 -RGEELKKKIENIV 147 (150)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHH
Confidence 3566666666553
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=177.30 Aligned_cols=144 Identities=17% Similarity=0.314 Sum_probs=122.6
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC--hHhH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS--HFTH 130 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~--~~~~ 130 (247)
+.+|+++|+|++ .+.+|+.+++++++||++||.|| ++||++|+.+++.|.+++++|++.++.+++|+.|. .+..
T Consensus 2 ~~~G~~~p~~~l---~~~~g~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~ 77 (154)
T 3kcm_A 2 SLEENPAPDFTL---NTLNGEVVKLSDLKGQVVIVNFW-ATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAV 77 (154)
T ss_dssp -CTTSBCCCCEE---ECTTSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHH
T ss_pred CCCCCCCCCeEE---EcCCCCEEehhhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHH
Confidence 468999999999 56699999999999999999999 99999999999999999999998899999999987 5566
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLR 210 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~ 210 (247)
++|.+.. +.+|+++.|.+..+.+.|++. .+|++||||++|+|++.+.|..+.. .+++.+
T Consensus 78 ~~~~~~~-------------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~~~--~~~l~~ 136 (154)
T 3kcm_A 78 EEFFRKT-------------GFTLPVLLDADKRVGKLYGTT------GVPETFVIDRHGVILKKVVGAMEWD--HPEVIA 136 (154)
T ss_dssp HHHHHHH-------------CCCCCEEECTTCHHHHHHTCC------SBCEEEEECTTSBEEEEEESCCCTT--SHHHHH
T ss_pred HHHHHHc-------------CCCeeEEecCchHHHHHhCCC------CCCeEEEECCCCcEEEEEcCCCccc--cHHHHH
Confidence 7777754 578999999999999999999 8999999999999999987765433 478888
Q ss_pred HHHhhhccccc
Q psy15453 211 LVRAFQYTDEH 221 (247)
Q Consensus 211 ~l~~l~~~~~~ 221 (247)
.|+.+....+.
T Consensus 137 ~l~~l~~~~~~ 147 (154)
T 3kcm_A 137 FLNNELSKARE 147 (154)
T ss_dssp HHHTC------
T ss_pred HHHHHHHHhhh
Confidence 88888765443
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=176.48 Aligned_cols=133 Identities=12% Similarity=0.078 Sum_probs=112.7
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHH---HHHHHHhcCcEEEEEeCCC-hHh
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNE---KIDEFHKIGAEVVGVSVDS-HFT 129 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~---l~~~~~~~~~~vl~Vs~d~-~~~ 129 (247)
++|+++|+|++ .+.+|+.+++++++||++||+|| ++||++|+.++|.|.+ ++++|+++++++++|+.|. .+.
T Consensus 2 ~~G~~~p~f~l---~~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~ 77 (142)
T 3ewl_A 2 NAGMKAADFTY---VTVHGDNSRMSRLKAQYTMLFFY-DPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREE 77 (142)
T ss_dssp CTTSBCCCCEE---ECTTCCEEEGGGCCCSEEEEEEC-CSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHH
T ss_pred CCCCcCCCCEE---ECCCCCEEEhhhcCCCEEEEEEE-CCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHH
Confidence 57999999999 56699999999999999999999 9999999999999999 9999998899999999984 444
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHH--HhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHH
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISR--DYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEE 207 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~--~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~ 207 (247)
.+++.+. + +++|+++.|.++.+.. .|++. .+|++||||++|+|++. ....++
T Consensus 78 ~~~~~~~----------~---~~~~~~~~d~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~-------~~~~~~ 131 (142)
T 3ewl_A 78 WATKAVY----------M---PQGWIVGWNKAGDIRTRQLYDIR------ATPTIYLLDGRKRVILK-------DTSMEQ 131 (142)
T ss_dssp HHHHHTT----------S---CTTCEEEECTTCHHHHTTCSCCC------SSSEEEEECTTCBEEEC-------SCCHHH
T ss_pred HHHHHHH----------c---CCCcceeeCCccchhhHHHcCCC------CCCeEEEECCCCCEEec-------CCCHHH
Confidence 4555542 2 6799999999988877 89998 89999999999999873 134677
Q ss_pred HHHHHHhhh
Q psy15453 208 TLRLVRAFQ 216 (247)
Q Consensus 208 il~~l~~l~ 216 (247)
+.+.|+.+.
T Consensus 132 l~~~l~~~~ 140 (142)
T 3ewl_A 132 LIDYLATQA 140 (142)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHc
Confidence 777777654
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=180.92 Aligned_cols=138 Identities=17% Similarity=0.219 Sum_probs=118.3
Q ss_pred cCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHH-HHHHHHHHHHHHhcCcEEEEEeC-------CC
Q psy15453 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTE-VLALNEKIDEFHKIGAEVVGVSV-------DS 126 (247)
Q Consensus 55 ~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~-~~~l~~l~~~~~~~~~~vl~Vs~-------d~ 126 (247)
.|+++|+|+++++. .+|+.+++++++||++||+|| ++||++|+.+ +|.|++++++|+++++.|++|+. ++
T Consensus 2 ~g~~aP~f~l~~~~-~~g~~~~l~~~~gk~vlv~f~-a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~ 79 (158)
T 3eyt_A 2 NAMKAPELQIQQWF-NSATDLTLADLRGKVIVIEAF-QMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMT 79 (158)
T ss_dssp CCEECCCCCEEEEE-SCSSCCCTGGGTTSEEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSC
T ss_pred CCCcCCCceehhhh-cCCCccCHHHhCCCEEEEEEE-CCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCC
Confidence 58899999996532 367999999999999999999 9999999997 99999999999978999999996 46
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcceeEEecCCc-----hHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCC
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTH-----EISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPV 201 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~-----~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~ 201 (247)
.+..++|.+.+ +.+|+++.|.+. .+.+.|++. .+|++||||++|+|++.+.|..+
T Consensus 80 ~~~~~~~~~~~-------------~~~~~~~~d~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~- 139 (158)
T 3eyt_A 80 PISLKAFLHEY-------------RIKFPVGVDQPGDGAMPRTMAAYQMR------GTPSLLLIDKAGDLRAHHFGDVS- 139 (158)
T ss_dssp HHHHHHHHHHT-------------TCCSCEEEECCCSSSSCHHHHHTTCC------SSSEEEEECTTSEEEEEEESCCC-
T ss_pred HHHHHHHHHHc-------------CCCceEEEcCccchhhHHHHHHcCCC------CCCEEEEECCCCCEEEEEeCCCC-
Confidence 67777777754 578999999987 799999998 89999999999999999877543
Q ss_pred CCCHHHHHHHHHhhhc
Q psy15453 202 GRSVEETLRLVRAFQY 217 (247)
Q Consensus 202 ~~~~~~il~~l~~l~~ 217 (247)
.+++.+.|+.+..
T Consensus 140 ---~~~l~~~i~~ll~ 152 (158)
T 3eyt_A 140 ---ELLLGAEIATLLG 152 (158)
T ss_dssp ---HHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHhc
Confidence 5677777777653
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.7e-26 Score=175.24 Aligned_cols=141 Identities=20% Similarity=0.224 Sum_probs=123.0
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC-hHhH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS-HFTH 130 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~-~~~~ 130 (247)
.+++|+++|+|++ .+ +|+.+++++++||++||+|| ++||++|+.+++.|.+++++|+++++++++|+.|. .+..
T Consensus 2 ~l~~G~~~P~f~l---~~-~g~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~ 76 (152)
T 3gl3_A 2 SLDKGDKAPDFAL---PG-KTGVVKLSDKTGSVVYLDFW-ASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDA 76 (152)
T ss_dssp CCCTTSBCCCCEE---EB-SSSEEEGGGGTTSEEEEEEE-CTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHH
T ss_pred CCCCCCcCCceEe---eC-CCCeEeHHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHH
Confidence 3688999999998 67 88999999999999999999 99999999999999999999998899999999985 4556
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLR 210 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~ 210 (247)
.++.+.. +.+|+++.|.+..+.+.|++. .+|++||||++|+|++.+.|..+ .+.+++.+
T Consensus 77 ~~~~~~~-------------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~--~~~~~l~~ 135 (152)
T 3gl3_A 77 MKFLAQV-------------PAEFTVAFDPKGQTPRLYGVK------GMPTSFLIDRNGKVLLQHVGFRP--ADKEALEQ 135 (152)
T ss_dssp HHHHHHS-------------CCCSEEEECTTCHHHHHTTCC------SSSEEEEECTTSBEEEEEESCCT--TTHHHHHH
T ss_pred HHHHHHc-------------CCCCceeECCcchhHHHcCCC------CCCeEEEECCCCCEEEEEccCCC--cCHHHHHH
Confidence 6666643 579999999999999999998 89999999999999999876543 34688888
Q ss_pred HHHhhhcc
Q psy15453 211 LVRAFQYT 218 (247)
Q Consensus 211 ~l~~l~~~ 218 (247)
.|+++...
T Consensus 136 ~i~~~~~~ 143 (152)
T 3gl3_A 136 QILAALGG 143 (152)
T ss_dssp HHHHHTC-
T ss_pred HHHHHHcc
Confidence 88877643
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=181.36 Aligned_cols=149 Identities=9% Similarity=0.147 Sum_probs=119.0
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHHhcC--cEEEEEeCC---
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTF-VCPTEVLALNEKIDEFHKIG--AEVVGVSVD--- 125 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp-~C~~~~~~l~~l~~~~~~~~--~~vl~Vs~d--- 125 (247)
.+.+|+++|+|++ .|.+|+.+++++++||++||+|| ++||+ +|+.+++.|.+++++|++++ ++||+|+.|
T Consensus 6 ~l~~g~~~p~f~l---~~~~G~~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~ 81 (174)
T 1xzo_A 6 KDPLNYEVEPFTF---QNQDGKNVSLESLKGEVWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPEN 81 (174)
T ss_dssp CSCCCEECCCCEE---ECTTSCEEETGGGTTCCEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTT
T ss_pred cCccccccCCcEE---EcCCCCEEehhhcCCCEEEEEEE-cCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCC
Confidence 5788999999999 56699999999999999999999 99999 99999999999999999876 999999997
Q ss_pred -ChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCc-----ccC-----CCccceeEEEEcCCCcEEEE
Q psy15453 126 -SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVY-----LED-----KGHSLRGLFIIDREGIVRQI 194 (247)
Q Consensus 126 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~-----~~~-----~g~~~p~~~lId~~G~v~~~ 194 (247)
+++..++|.+ .+++...+|+++.|++..+.+.|++. ... ...+.|++||||++|+|++.
T Consensus 82 d~~~~~~~~~~----------~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~ 151 (174)
T 1xzo_A 82 DKPKQLKKFAA----------NYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD 151 (174)
T ss_dssp CCHHHHHHHHT----------TSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred CCHHHHHHHHH----------HcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEE
Confidence 3455566655 33332223499999888877776531 000 01267999999999999999
Q ss_pred EecCCCCCCCHHHHHHHHHhhh
Q psy15453 195 TLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 195 ~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+.|... .+.+++++.|+.+.
T Consensus 152 ~~g~~~--~~~~~l~~~l~~ll 171 (174)
T 1xzo_A 152 YNGVEN--TPYDDIISDVKSAS 171 (174)
T ss_dssp EESSSS--CCHHHHHHHHHHHT
T ss_pred EcCCCC--CCHHHHHHHHHHHH
Confidence 877653 34788888888875
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=179.22 Aligned_cols=132 Identities=15% Similarity=0.219 Sum_probs=108.5
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC-hHhH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS-HFTH 130 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~-~~~~ 130 (247)
.+.+|+++|+|++ +. +|+.+++++++||++||+|| ++||++|+.++|.|++++++|++++++||+|+.|. .+..
T Consensus 6 ~l~~G~~~P~f~l-~~---~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~ 80 (143)
T 4fo5_A 6 GVNPGDLAPRIEF-LG---NDAKASFHNQLGRYTLLNFW-AAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIF 80 (143)
T ss_dssp SSSTTSBCCCCCC---------CCCSCCSSCCEEEEEEE-CTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHH
T ss_pred ccCCcccCCceEE-cC---CCCEEEHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHH
Confidence 5889999999998 55 88999999999999999999 99999999999999999999998899999999985 4456
Q ss_pred HHHHHHhhccccccccCCCCCcce-eEEecCC---chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHH
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKI-PLLSDLT---HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVE 206 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~D~~---~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~ 206 (247)
+++.+.. +++| +.+.|.. ..+.+.|++. .+|++||||++|+|++.+.+ .+
T Consensus 81 ~~~~~~~-------------~~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~-------~~ 134 (143)
T 4fo5_A 81 TETVKID-------------KLDLSTQFHEGLGKESELYKKYDLR------KGFKNFLINDEGVIIAANVT-------PE 134 (143)
T ss_dssp HHHHHHH-------------TCCGGGEEECTTGGGSHHHHHTTGG------GCCCEEEECTTSBEEEESCC-------HH
T ss_pred HHHHHHh-------------CCCCceeeecccccchHHHHHcCCC------CCCcEEEECCCCEEEEccCC-------HH
Confidence 6666643 5788 8888874 6799999999 89999999999999987532 35
Q ss_pred HHHHHHHh
Q psy15453 207 ETLRLVRA 214 (247)
Q Consensus 207 ~il~~l~~ 214 (247)
++.+.|+.
T Consensus 135 ~l~~~l~~ 142 (143)
T 4fo5_A 135 KLTEILKA 142 (143)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 55555543
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=176.30 Aligned_cols=133 Identities=11% Similarity=0.093 Sum_probs=110.8
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHH---HHHHHHhcCcEEEEEeCCChH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNE---KIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~---l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
...+|+++|+|++ .+.+|+.+++++++||++||+|| ++||++|+.++|.|++ ++++|++.+++|++|+.|...
T Consensus 4 ~~~~G~~ap~f~l---~~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~ 79 (142)
T 3eur_A 4 KNRLGTKALNFTY---TLDSGVKGTLYQFPAEYTLLFIN-NPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEEL 79 (142)
T ss_dssp TTCTTSBCCCCEE---EETTSCEEETTTCCCSEEEEEEC-CSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCH
T ss_pred hhcCCCccCCcEE---EcCCCCEeeHHHcCCCEEEEEEE-CCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCH
Confidence 4678999999999 45599999999999999999999 9999999999999999 999999889999999998742
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEecCCch--HHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHH
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHE--ISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVE 206 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~--~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~ 206 (247)
..|.+... .+ +.+|+.+.|.+.. +.+.|++. .+|++||||++|+|++...+ .+
T Consensus 80 --~~~~~~~~-------~~---~~~~~~~~d~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~-------~~ 134 (142)
T 3eur_A 80 --DEWKKHRN-------DF---AKEWTNGYDKELVIKNKNLYDLR------AIPTLYLLDKNKTVLLKDAT-------LQ 134 (142)
T ss_dssp --HHHHHHGG-------GS---CTTSEEEECTTCHHHHTTCSCCT------TCSEEEEECTTCBEEEEEEC-------HH
T ss_pred --HHHHHHHH-------hc---ccccccccCccchhhhhhhcCCC------cCCeEEEECCCCcEEecCCC-------HH
Confidence 23333222 22 5688999998865 78899998 89999999999999988642 46
Q ss_pred HHHHHHH
Q psy15453 207 ETLRLVR 213 (247)
Q Consensus 207 ~il~~l~ 213 (247)
++.+.|+
T Consensus 135 ~l~~~l~ 141 (142)
T 3eur_A 135 KVEQYLA 141 (142)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6655554
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=184.61 Aligned_cols=148 Identities=20% Similarity=0.302 Sum_probs=114.4
Q ss_pred ccccCCCCCCceeeeee-cCCc-----eeEEcCCC-CCCeEEEEEEeCCCCCCcHHH-HHHHHHHHHHHHhcCcE-EEEE
Q psy15453 52 NAVVMKPAPYWKGTAVV-DGNI-----KEIKLTDY-RGKYLVFFFYPLDFTFVCPTE-VLALNEKIDEFHKIGAE-VVGV 122 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~-d~~G-----~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~-~~~l~~l~~~~~~~~~~-vl~V 122 (247)
...+|+++|+|+++++. +.+| +.++|+++ +||++||.||+++|||+|+.| +|.|++++++|+++|++ |++|
T Consensus 6 g~~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~I 85 (171)
T 2pwj_A 6 GTDILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICV 85 (171)
T ss_dssp ----CCCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEE
T ss_pred cccccCcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 34567799999996542 1246 89999996 998655544449999999999 99999999999999999 9999
Q ss_pred eCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC----Cc-cceeEEEEcCCCcEEEEEec
Q psy15453 123 SVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK----GH-SLRGLFIIDREGIVRQITLN 197 (247)
Q Consensus 123 s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~----g~-~~p~~~lId~~G~v~~~~~~ 197 (247)
|.|+++.+++|.+++ ++ ..+|++++|+++.+++.||+..... |. ..|.+|+|| +|+|++.+.+
T Consensus 86 s~d~~~~~~~~~~~~----------~~-~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~ 153 (171)
T 2pwj_A 86 AINDPYTVNAWAEKI----------QA-KDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALNVE 153 (171)
T ss_dssp ESSCHHHHHHHHHHT----------TC-TTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEEC
T ss_pred eCCCHHHHHHHHHHh----------CC-CCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEEee
Confidence 999998889998854 22 1479999999999999999975432 21 257899999 9999999988
Q ss_pred CCCC---CCCHHHHHHH
Q psy15453 198 DLPV---GRSVEETLRL 211 (247)
Q Consensus 198 ~~~~---~~~~~~il~~ 211 (247)
..+. ..+.+++++.
T Consensus 154 ~~~~~~~~~~~~~il~~ 170 (171)
T 2pwj_A 154 ESPSDVKVSGAETILGQ 170 (171)
T ss_dssp SSTTCCSSSSHHHHHHH
T ss_pred cCCCCCcccCHHHHHhc
Confidence 7654 3445555543
|
| >4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-26 Score=200.71 Aligned_cols=158 Identities=24% Similarity=0.332 Sum_probs=130.0
Q ss_pred CCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHH
Q psy15453 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINS 136 (247)
Q Consensus 57 ~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~ 136 (247)
.++|+|+| .|.+|++++|+||+||++||+|||+.|||+|..|++.+++. ..++++||+||.|+++.+++|.++
T Consensus 2 ak~p~F~l---~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~~----~~~~~~v~gis~D~~~~~~~f~~~ 74 (322)
T 4eo3_A 2 ARVKHFEL---LTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSRE----NFEKAQVVGISRDSVEALKRFKEK 74 (322)
T ss_dssp CBCCCCEE---EETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHHS----CCTTEEEEEEESCCHHHHHHHHHH
T ss_pred CCCCCcEE---ECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHH----hhCCCEEEEEeCCCHHHHHHHHHh
Confidence 36899999 55699999999999999999999999999999999988652 234899999999999999999986
Q ss_pred hhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 137 LKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+ +++||+++|+++.+++.||+... +..+|++||||++|+|++++.+ .....+.+++++.|++++
T Consensus 75 ~-------------~l~fp~l~D~~~~v~~~ygv~~~--~~~~r~tfiId~~G~i~~~~~~-v~~~~h~~~~l~~~~~~~ 138 (322)
T 4eo3_A 75 N-------------DLKVTLLSDPEGILHEFFNVLEN--GKTVRSTFLIDRWGFVRKEWRR-VKVEGHVQEVKEALDRLI 138 (322)
T ss_dssp H-------------TCCSEEEECTTCHHHHHTTCEET--TEECCEEEEECTTSBEEEEEES-CCSTTHHHHHHHHHHHHH
T ss_pred h-------------CCceEEEEcCchHHHHhcCCCCC--CcCccEEEEECCCCEEEEEEeC-CCccccHHHHHHHHhhhc
Confidence 5 68999999999999999999632 4467999999999999999854 567788999999999997
Q ss_pred cccccCCccCCCCcCCCccccC
Q psy15453 217 YTDEHGEACPSGWQPGQRTISN 238 (247)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~ 238 (247)
. ++.+..-..+++---|.+.+
T Consensus 139 ~-~~~~~~~~I~~RRSiR~F~~ 159 (322)
T 4eo3_A 139 E-EDLSLNKHIEWRRARRALKK 159 (322)
T ss_dssp H-HHTSCCHHHHHCCCCCCBCC
T ss_pred h-hhhHHHHHHHhhhccCCcCc
Confidence 5 33344444444444444433
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-26 Score=175.41 Aligned_cols=137 Identities=18% Similarity=0.217 Sum_probs=119.5
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC-ChHhH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD-SHFTH 130 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d-~~~~~ 130 (247)
.+.+|+++|+|++ .+.+|+.+++++++||++||.|| ++||++|+.++|.|++++++|+++++.+++|+.| ..+..
T Consensus 4 ~~~~G~~~p~~~l---~~~~g~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~ 79 (148)
T 3hcz_A 4 PLLLGKKAPNLYM---TDTTGTYRYLYDVQAKYTILFFW-DSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEW 79 (148)
T ss_dssp CCCTTSBCCCCCC---BCTTSCBCCGGGCCCSEEEEEEE-CGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHH
T ss_pred ccCCCCcCCceEE---ecCCCCEEEhHHcCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHH
Confidence 5788999999999 55699999999999999999999 9999999999999999999999889999999998 45667
Q ss_pred HHHHHHhhccccccccCCCCCcc-eeEEecCCch--HHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHH
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLK-IPLLSDLTHE--ISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEE 207 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~D~~~~--~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~ 207 (247)
++|.+.+ +++ |+++.|.+.. +.+.|++. .+|+++|||++|+|++.+.+. .++++
T Consensus 80 ~~~~~~~-------------~~~~~~~~~d~~~~~~~~~~~~i~------~~P~~~lid~~G~i~~~~~g~----~~~~~ 136 (148)
T 3hcz_A 80 LKFIRSK-------------KIGGWLNVRDSKNHTDFKITYDIY------ATPVLYVLDKNKVIIAKRIGY----ENLDD 136 (148)
T ss_dssp HHHHHHH-------------TCTTSEEEECTTCCCCHHHHHCCC------SSCEEEEECTTCBEEEESCCG----GGHHH
T ss_pred HHHHHHc-------------CCCCceEEeccccchhHHHhcCcC------CCCEEEEECCCCcEEEecCCH----HHHHH
Confidence 7777754 455 9999999987 99999999 899999999999999987544 45677
Q ss_pred HHHHHHhh
Q psy15453 208 TLRLVRAF 215 (247)
Q Consensus 208 il~~l~~l 215 (247)
+++.+..+
T Consensus 137 ~l~~l~~~ 144 (148)
T 3hcz_A 137 FLVQYEKS 144 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776554
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=174.03 Aligned_cols=136 Identities=21% Similarity=0.316 Sum_probs=115.2
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC-hHhH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS-HFTH 130 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~-~~~~ 130 (247)
.+.+|+++|+|++ .|.+|+.+++++++||++||+|| ++||++|+.++|.|++++++|++++++|++|+.|. .+..
T Consensus 2 ~l~~g~~~p~f~l---~~~~G~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~ 77 (152)
T 2lrn_A 2 SLATGSVAPAITG---IDLKGNSVSLNDFKGKYVLVDFW-FAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDW 77 (152)
T ss_dssp CSCTTEECCCCEE---ECSSSCEEESGGGTTSEEEEEEE-CTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHH
T ss_pred CccCCCcCCCcee---EcCCCCEEeHHHcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHH
Confidence 3678999999999 55599999999999999999999 99999999999999999999998889999999985 4555
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecC---CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHH
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDL---THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEE 207 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~---~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~ 207 (247)
.++.+.. +.+|+++.|. +..+.+.||+. .+|++||||++|+|++.+.+ . ++
T Consensus 78 ~~~~~~~-------------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~----~---~~ 131 (152)
T 2lrn_A 78 KKAIEED-------------KSYWNQVLLQKDDVKDVLESYCIV------GFPHIILVDPEGKIVAKELR----G---DD 131 (152)
T ss_dssp HHHHHHH-------------TCCSEEEEECHHHHHHHHHHTTCC------SSCEEEEECTTSEEEEECCC----T---TH
T ss_pred HHHHHHh-------------CCCCeEEecccchhHHHHHHhCCC------cCCeEEEECCCCeEEEeeCC----H---HH
Confidence 6666643 5789999999 68999999998 89999999999999988621 2 45
Q ss_pred HHHHHHhhhc
Q psy15453 208 TLRLVRAFQY 217 (247)
Q Consensus 208 il~~l~~l~~ 217 (247)
+.+.|+.+..
T Consensus 132 l~~~l~~l~~ 141 (152)
T 2lrn_A 132 LYNTVEKFVN 141 (152)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5555555543
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-25 Score=177.41 Aligned_cols=142 Identities=14% Similarity=0.229 Sum_probs=120.9
Q ss_pred cccccCCCCCCceeeeeecC--CceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCc------EEEEE
Q psy15453 51 TNAVVMKPAPYWKGTAVVDG--NIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGA------EVVGV 122 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~--~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~------~vl~V 122 (247)
..+..|.++|+|++ .+. +|+.+++++++||++||+|| ++||++|+.++|.|++++++|+++++ +|++|
T Consensus 29 ~~~~~g~~~p~f~l---~~~~~~g~~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v 104 (183)
T 3lwa_A 29 YDEADRQQLPDIGG---DSLMEEGTQINLSDFENQVVILNAW-GQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGI 104 (183)
T ss_dssp CCGGGCCCCCCCEE---EBSSSTTCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEE
T ss_pred cccccCCCCCceec---cccccCCcEecHHHhCCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEE
Confidence 35788999999999 666 89999999999999999999 99999999999999999999999889 99999
Q ss_pred eCCC--hHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 123 SVDS--HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 123 s~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
+.|. .+..++|.+.+ +++|+++.|.+..+.+.|+.+.. ..+|++||||++|+|++.+.+..
T Consensus 105 ~~d~~~~~~~~~~~~~~-------------~~~~~~~~d~~~~~~~~~~~~~v---~~~P~~~lid~~G~i~~~~~g~~- 167 (183)
T 3lwa_A 105 NVRDYSRDIAQDFVTDN-------------GLDYPSIYDPPFMTAASLGGVPA---SVIPTTIVLDKQHRPAAVFLREV- 167 (183)
T ss_dssp ECSCCCHHHHHHHHHHT-------------TCCSCEEECTTCGGGGGTTTCCT---TCCSEEEEECTTSCEEEEECSCC-
T ss_pred ECCCCCHHHHHHHHHHc-------------CCCccEEECCcchHHHHhccCCC---CCCCeEEEECCCCcEEEEEcCCC-
Confidence 9987 67778887754 57899999999999999973211 17899999999999999986653
Q ss_pred CCCCHHHHHHHHHhhh
Q psy15453 201 VGRSVEETLRLVRAFQ 216 (247)
Q Consensus 201 ~~~~~~~il~~l~~l~ 216 (247)
+.+++.+.|+.+.
T Consensus 168 ---~~~~l~~~l~~ll 180 (183)
T 3lwa_A 168 ---TSKDVLDVALPLV 180 (183)
T ss_dssp ---CHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHH
Confidence 3677777777664
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-26 Score=177.78 Aligned_cols=136 Identities=17% Similarity=0.221 Sum_probs=118.3
Q ss_pred cCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHH-HHHHHHHHHHHHhcCcEEEEEeC-------CC
Q psy15453 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTE-VLALNEKIDEFHKIGAEVVGVSV-------DS 126 (247)
Q Consensus 55 ~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~-~~~l~~l~~~~~~~~~~vl~Vs~-------d~ 126 (247)
.|.++|+|++.++ .+|+.+++++++||++||+|| ++||++|+.+ +|.|++++++|+++++++++|+. |+
T Consensus 5 ~g~~~p~~~~~~~--~~g~~~~l~~~~gk~vlv~F~-a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~ 81 (160)
T 3lor_A 5 DNAPLLELDVQEW--VNHEGLSNEDLRGKVVVVEVF-QMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMT 81 (160)
T ss_dssp TTCCBCCCCEEEE--SSSCCCCHHHHTTSEEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSC
T ss_pred CCCcCCCcccccc--cCCCccCHHHhCCCEEEEEEE-cCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCC
Confidence 5899999999652 478999999999999999999 9999999996 99999999999988999999997 56
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcceeEEecCCch------HHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHE------ISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~------~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
.+..++|.+.+ +.+|+++.|.+.. +.+.||+. .+|++||||++|+|++.+.|..+
T Consensus 82 ~~~~~~~~~~~-------------~~~~~~~~d~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~ 142 (160)
T 3lor_A 82 PEALKVFIDEF-------------GIKFPVAVDMPREGQRIPSTMKKYRLE------GTPSIILADRKGRIRQVQFGQVD 142 (160)
T ss_dssp HHHHHHHHHHT-------------TCCSCEEEECCCTTCSSCHHHHHTTCC------SSSEEEEECTTSBEEEEEESCCC
T ss_pred HHHHHHHHHHc-------------CCCCcEEECCccccchhhhHHHhcccC------ccceEEEECCCCcEEEEecCcCC
Confidence 77778887754 5789999999987 99999998 89999999999999999877643
Q ss_pred CCCCHHHHHHHHHhhh
Q psy15453 201 VGRSVEETLRLVRAFQ 216 (247)
Q Consensus 201 ~~~~~~~il~~l~~l~ 216 (247)
.+++.+.|+.+.
T Consensus 143 ----~~~l~~~i~~ll 154 (160)
T 3lor_A 143 ----DFVLGLLLGSLL 154 (160)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHH
Confidence 466777776664
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.7e-26 Score=177.39 Aligned_cols=142 Identities=22% Similarity=0.334 Sum_probs=122.5
Q ss_pred ccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 50 WTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 50 ~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
...+.+|+++|+|++ .+.+|+.+++++++||++||+|| ++||++|+.+++.|++++++|++.++.+++|+.|. .
T Consensus 12 ~~~~~~G~~~p~f~l---~~~~g~~~~l~~~~gk~vll~F~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~--~ 85 (158)
T 3hdc_A 12 APLVRTGALAPNFKL---PTLSGENKSLAQYRGKIVLVNFW-ASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEK--R 85 (158)
T ss_dssp SCCCCTTSBCCCCEE---ECTTSCEEESGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSS--S
T ss_pred CcccCCCCcCCCcee---EcCCCCEEehHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCH--H
Confidence 346889999999999 55599999999999999999999 99999999999999999999997899999999987 2
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
..+|.+ .. +.+|+++.|.+..+.+.|++. .+|++||||++|+|++.+.|..+.. .++++
T Consensus 86 ~~~~~~----------~~---~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~G~~~~~--~~~~~ 144 (158)
T 3hdc_A 86 FPEKYR----------RA---PVSFNFLSDATGQVQQRYGAN------RLPDTFIVDRKGIIRQRVTGGIEWD--APKVV 144 (158)
T ss_dssp CCGGGG----------GC---CCSCEEEECTTSHHHHHTTCC------SSSEEEEECTTSBEEEEEESCCCTT--SHHHH
T ss_pred HHHHHH----------Hc---CCCceEEECchHHHHHHhCCC------CcceEEEEcCCCCEEEEEeCCCccc--hHHHH
Confidence 333333 33 578999999999999999999 8999999999999999998876655 48888
Q ss_pred HHHHhhhcc
Q psy15453 210 RLVRAFQYT 218 (247)
Q Consensus 210 ~~l~~l~~~ 218 (247)
+.+++..+.
T Consensus 145 ~~~~~~~~~ 153 (158)
T 3hdc_A 145 SYLKSLEGH 153 (158)
T ss_dssp HHHHTTC--
T ss_pred HHHHhhccc
Confidence 888887643
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=172.28 Aligned_cols=138 Identities=22% Similarity=0.344 Sum_probs=120.3
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC-hHhHHH
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS-HFTHRA 132 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~-~~~~~~ 132 (247)
++|+++|+|++ .|.+|+.+++++++||++||+|| ++||++|+.++|.|++++++|+++++.+++|+.|. .+..+.
T Consensus 1 ~~G~~~p~~~l---~~~~g~~~~l~~~~gk~vlv~F~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~ 76 (151)
T 2f9s_A 1 SEGSDAPNFVL---EDTNGKRIELSDLKGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHN 76 (151)
T ss_dssp -CCEECCCCEE---ECTTCCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHH
T ss_pred CCCCcCCccee---EcCCCCEEEHHHcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHH
Confidence 36899999999 56699999999999999999999 99999999999999999999998899999999865 566677
Q ss_pred HHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 133 WINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
|.+.+ +++|+++.|.+..+.+.|++. .+|++||||++|+|++.+.|.. +.+++.+.|
T Consensus 77 ~~~~~-------------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~G~~----~~~~l~~~l 133 (151)
T 2f9s_A 77 FMKSY-------------GVNFPVVLDTDRQVLDAYDVS------PLPTTFLINPEGKVVKVVTGTM----TESMIHDYM 133 (151)
T ss_dssp HHHHH-------------TCCSCEEEETTSHHHHHTTCC------SSCEEEEECTTSEEEEEEESCC----CHHHHHHHH
T ss_pred HHHHc-------------CCCceEEECCchHHHHhcCCC------CCCeEEEECCCCcEEEEEeCCC----CHHHHHHHH
Confidence 77754 578999999999999999998 8999999999999999886654 367788888
Q ss_pred Hhhhcc
Q psy15453 213 RAFQYT 218 (247)
Q Consensus 213 ~~l~~~ 218 (247)
+.+...
T Consensus 134 ~~ll~~ 139 (151)
T 2f9s_A 134 NLIKPG 139 (151)
T ss_dssp HHHSCC
T ss_pred HHHHhh
Confidence 777543
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-25 Score=178.59 Aligned_cols=146 Identities=21% Similarity=0.288 Sum_probs=123.1
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh--H
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH--F 128 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~--~ 128 (247)
..+.+|.++|+|++ .|.+|+.+++++++||++||+|| ++||++|+.+++.|++++++|++.+++|++|+.|.. +
T Consensus 32 ~~~~~g~~~p~f~l---~~~~G~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~ 107 (186)
T 1jfu_A 32 TMASAPLKLPDLAF---EDADGKPKKLSDFRGKTLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPE 107 (186)
T ss_dssp EECCSCCBCCCCEE---ECTTSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTT
T ss_pred ccccCCCcCCCcEe---EcCCCCEeeHHHcCCCEEEEEEE-eCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHH
Confidence 46788999999999 56699999999999999999999 999999999999999999999877999999999864 5
Q ss_pred hHHHHHHHhhccccccccCCCCCc-ceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHH
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKL-KIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEE 207 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~ 207 (247)
..++|.+.+ +. .|+++.|++..+.+.|++... ...+|++||||++|+|++.+.|..+. +.++
T Consensus 108 ~~~~~~~~~-------------~~~~~~~~~d~~~~~~~~~~~~~~--~~~~P~~~lid~~G~i~~~~~g~~~~--~~~~ 170 (186)
T 1jfu_A 108 KPKTFLKEA-------------NLTRLGYFNDQKAKVFQDLKAIGR--ALGMPTSVLVDPQGCEIATIAGPAEW--ASED 170 (186)
T ss_dssp HHHHHHHHT-------------TCCTTCCEECTTCHHHHHHHTTTC--CSSSSEEEEECTTSBEEEEEESCCCT--TSHH
T ss_pred HHHHHHHHc-------------CCCCCceEECCcchHHHHhccccc--cCCCCEEEEECCCCCEEEEEecCCcc--CHHH
Confidence 667777754 34 588899999999999998522 12579999999999999998776542 2477
Q ss_pred HHHHHHhhhc
Q psy15453 208 TLRLVRAFQY 217 (247)
Q Consensus 208 il~~l~~l~~ 217 (247)
+.+.|+.+..
T Consensus 171 l~~~l~~ll~ 180 (186)
T 1jfu_A 171 ALKLIRAATG 180 (186)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 8888877753
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=175.79 Aligned_cols=142 Identities=11% Similarity=0.072 Sum_probs=107.1
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC-----
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS----- 126 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~----- 126 (247)
.+++|+++|+|++ .|.+|+.+++++++||++||+|| ++|||+|+.++|.|++++++|++++++||+|+.|.
T Consensus 4 ~~~~g~~~p~f~l---~~~~G~~~~l~~~~gk~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~ 79 (169)
T 2v1m_A 4 SHKSWNSIYEFTV---KDINGVDVSLEKYRGHVCLIVNV-ACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQE 79 (169)
T ss_dssp ---CCCSGGGCEE---EBTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCC
T ss_pred cccCCccccccee---ecCCCCCccHHHcCCCEEEEEEe-eccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCC
Confidence 4678999999999 55699999999999999999999 99999999999999999999998899999999863
Q ss_pred ---hHhHHHH-HHHhhccccccccCCCCCcceeEEe--cCCchHHH-Hh--------CCcccCCCccceeEEEEcCCCcE
Q psy15453 127 ---HFTHRAW-INSLKKDNSLKKDNRLDKLKIPLLS--DLTHEISR-DY--------GVYLEDKGHSLRGLFIIDREGIV 191 (247)
Q Consensus 127 ---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~--D~~~~~~~-~~--------~~~~~~~g~~~p~~~lId~~G~v 191 (247)
.+..++| .+.+ +.+|+++. |.++.... .| |+... .-..+|++||||++|+|
T Consensus 80 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~-~i~~~P~~~lid~~G~i 145 (169)
T 2v1m_A 80 PWAEAEIKKFVTEKY-------------GVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTN-NIKWNFSKFLVDRQGQP 145 (169)
T ss_dssp CSCHHHHHHHHHHHH-------------CCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSC-SCCSTTCEEEECTTSCE
T ss_pred CCCHHHHHHHHHHhc-------------CCCCceEEEEeecCccccHHHHHHHhhcCCccCC-cccccceEEEECCCCCE
Confidence 4566777 3543 57899986 66654432 33 43200 00146899999999999
Q ss_pred EEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 192 RQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 192 ~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
++.+.|..+. +++.+.|+.+
T Consensus 146 ~~~~~g~~~~----~~l~~~i~~l 165 (169)
T 2v1m_A 146 VKRYSPTTAP----YDIEGDIMEL 165 (169)
T ss_dssp EEEECTTSCG----GGGHHHHHHH
T ss_pred EEEcCCCCCH----HHHHHHHHHH
Confidence 9998765442 3444445444
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=173.61 Aligned_cols=134 Identities=19% Similarity=0.241 Sum_probs=111.6
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHR 131 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~ 131 (247)
....|+++|+|++ .|.+|+.+++++++||++||+|| ++||++|+.++|.|++++++|++++++|++|+.|+..+.
T Consensus 8 ~~~~g~~~p~f~l---~~~~G~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~- 82 (152)
T 2lrt_A 8 DKIKEASIIDIQL---KDLKGNTRSLTDLKGKVVLIDFT-VYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHF- 82 (152)
T ss_dssp SSSCTTCSCCCCE---EBTTSCEECTTTGGGSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHH-
T ss_pred hhccCCCCCCeEE---EcCCCCEEeHHHhCCCEEEEEEE-cCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHH-
Confidence 3467899999999 55699999999999999999999 999999999999999999999988999999999875422
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecCCch---HHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHH
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDLTHE---ISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEET 208 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~---~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~i 208 (247)
+ +.+.. +++|+++.|.++. +.+.|++. .+|++||||++|+|++.+.|. .+.++.
T Consensus 83 -~-~~~~~-----------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~~e~~ 139 (152)
T 2lrt_A 83 -W-KTSAD-----------NLPWVCVRDANGAYSSYISLYNVT------NLPSVFLVNRNNELSARGENI----KDLDEA 139 (152)
T ss_dssp -H-HHHHT-----------TCSSEEEECSSGGGCHHHHHHTCC------SCSEEEEEETTTEEEEETTTC----SCHHHH
T ss_pred -H-HHHHh-----------CCCceEEECCCCcchHHHHHcCcc------cCceEEEECCCCeEEEecCCH----HHHHHH
Confidence 2 22211 4789999999976 99999998 899999999999999987543 335655
Q ss_pred HHHHH
Q psy15453 209 LRLVR 213 (247)
Q Consensus 209 l~~l~ 213 (247)
+..+.
T Consensus 140 ~~~~~ 144 (152)
T 2lrt_A 140 IKKLL 144 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=179.75 Aligned_cols=149 Identities=19% Similarity=0.197 Sum_probs=120.5
Q ss_pred ccccccCCCCCCceeeeeecCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcE-EEEEeCCCh
Q psy15453 50 WTNAVVMKPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAE-VVGVSVDSH 127 (247)
Q Consensus 50 ~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~-vl~Vs~d~~ 127 (247)
...+++|+++|+|++. .++.++.++|+++ +||++||+|+|+.|||.|..|++.+++.+++|+++|++ |++||.|++
T Consensus 11 ~~~~~vGd~aPdf~l~--~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~~ 88 (171)
T 2xhf_A 11 GSPIKVGDIIPDVLVY--EDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVNDP 88 (171)
T ss_dssp CCCCCTTCBCCCCEEE--CSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSCH
T ss_pred CCcccCcCCCCCeEEe--cCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCH
Confidence 3478999999999995 1222389999995 99999999999999999999999999999999999996 999999999
Q ss_pred HhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC--C---ccceeEEEEcCCCcEEEEEecCCCC-
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK--G---HSLRGLFIIDREGIVRQITLNDLPV- 201 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~--g---~~~p~~~lId~~G~v~~~~~~~~~~- 201 (247)
+.+++|.++.. + ..+|++++|++++++++||+..+.. | ...+.+|||| +|+|+++++.+...
T Consensus 89 ~~~~~w~~~~~----------~-~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~v~~~~~~ 156 (171)
T 2xhf_A 89 FVMAAWGKTVD----------P-EHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVSTEPDITG 156 (171)
T ss_dssp HHHHHHHHHHC----------T-TCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEEETTSCSH
T ss_pred HHHHHHHHhcC----------C-CCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEEEeCCCCc
Confidence 99999999651 1 1289999999999999999986542 1 2568999999 99999999765443
Q ss_pred --CCCHHHHHHHH
Q psy15453 202 --GRSVEETLRLV 212 (247)
Q Consensus 202 --~~~~~~il~~l 212 (247)
....+++++.|
T Consensus 157 ~~~s~a~~vL~~~ 169 (171)
T 2xhf_A 157 LACLLSIQRQKEN 169 (171)
T ss_dssp HHHHHHHHHC---
T ss_pred ccCCCHHHHHHHh
Confidence 12245554444
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-25 Score=169.77 Aligned_cols=135 Identities=17% Similarity=0.294 Sum_probs=116.8
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcC--CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHH-HhcCcEEEEEeCCCh-
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLT--DYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEF-HKIGAEVVGVSVDSH- 127 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~--~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~-~~~~~~vl~Vs~d~~- 127 (247)
.+.+|+++|+|++ .+.+|+.++++ +++||++||+|| ++||++|+.++|.|.+++++| +++++.+++|+.|..
T Consensus 4 ~~~~g~~~p~~~l---~~~~g~~~~l~~~~~~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~ 79 (148)
T 3fkf_A 4 KVTVGKSAPYFSL---PNEKGEKLSRSAERFRNRYLLLNFW-ASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDR 79 (148)
T ss_dssp -CCTTSBCCCCCE---EBTTSCEECTTSTTTTTSEEEEEEE-CGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCH
T ss_pred cccCCCcCCCeEe---eCCCCCEEeccccccCCcEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCH
Confidence 5789999999999 55599999999 999999999999 999999999999999999999 777899999999864
Q ss_pred HhHHHHHHHhhccccccccCCCCCcceeEEecC---CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCC
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL---THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRS 204 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~---~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~ 204 (247)
+..+++.+.+ +++|+++.|. +..+.+.|++. .+|+++|||++|+|++.+. +
T Consensus 80 ~~~~~~~~~~-------------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~-------~ 133 (148)
T 3fkf_A 80 EAWETAIKKD-------------TLSWDQVCDFTGLSSETAKQYAIL------TLPTNILLSPTGKILARDI-------Q 133 (148)
T ss_dssp HHHHHHHHHT-------------TCCSEEECCSCGGGCHHHHHTTCC------SSSEEEEECTTSBEEEESC-------C
T ss_pred HHHHHHHHHc-------------CCCceEEEccCCcchHHHHhcCCC------CcCEEEEECCCCeEEEecC-------C
Confidence 4556666543 5799999998 67999999999 8999999999999998863 4
Q ss_pred HHHHHHHHHhhh
Q psy15453 205 VEETLRLVRAFQ 216 (247)
Q Consensus 205 ~~~il~~l~~l~ 216 (247)
.+++.+.|+.+.
T Consensus 134 ~~~l~~~l~~ll 145 (148)
T 3fkf_A 134 GEALTGKLKELL 145 (148)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 677777777663
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=179.99 Aligned_cols=139 Identities=16% Similarity=0.132 Sum_probs=107.5
Q ss_pred ccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC----
Q psy15453 50 WTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD---- 125 (247)
Q Consensus 50 ~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d---- 125 (247)
...+++|+++|+|++ .|.+|+.+++++++||++||+|| ++|||+|+.++|.|++++++|++++++||+|+.|
T Consensus 20 ~~~~~~g~~~p~f~l---~~~~G~~~~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~ 95 (181)
T 2p31_A 20 FQSMQQEQDFYDFKA---VNIRGKLVSLEKYRGSVSLVVNV-ASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQ 95 (181)
T ss_dssp -------CCGGGCEE---EBTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTT
T ss_pred cCcCCcCCccCceEe---ecCCCCEecHHHcCCCEEEEEEe-ccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCC
Confidence 346889999999999 55699999999999999999999 9999999999999999999999889999999986
Q ss_pred ----ChHhHHHHHHH-hhccccccccCCCCCcceeEEec--CCchHHH---HhCCcccCCCccce-------eEEEEcCC
Q psy15453 126 ----SHFTHRAWINS-LKKDNSLKKDNRLDKLKIPLLSD--LTHEISR---DYGVYLEDKGHSLR-------GLFIIDRE 188 (247)
Q Consensus 126 ----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~D--~~~~~~~---~~~~~~~~~g~~~p-------~~~lId~~ 188 (247)
+.+..++|.+. + +.+|+++.| .++.... .|++. .+| ++||||++
T Consensus 96 ~e~~~~~~~~~~~~~~~-------------~~~~p~~~~~d~~g~~~~~~~~~~~~------~~P~~~~~~~~~~lid~~ 156 (181)
T 2p31_A 96 QEPDSNKEIESFARRTY-------------SVSFPMFSKIAVTGTGAHPAFKYLAQ------TSGKEPTWNFWKYLVAPD 156 (181)
T ss_dssp CCCSCHHHHHHHHHHHH-------------CCCSCBBCCCCCSSTTSCHHHHHHHH------HHSCCCCSTTCEEEECTT
T ss_pred CCCCCHHHHHHHHHhhc-------------CCCceeEeecccCCccchhhhhhhhh------cCCCccccceeEEEEcCC
Confidence 45667777775 3 568898864 4433322 33344 567 99999999
Q ss_pred CcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 189 GIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 189 G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
|+|++.+.+.. +.+++.+.|+.+
T Consensus 157 G~i~~~~~g~~----~~~~l~~~i~~l 179 (181)
T 2p31_A 157 GKVVGAWDPTV----SVEEVRPQITAL 179 (181)
T ss_dssp SCEEEEECTTS----CHHHHHHHHHTT
T ss_pred CCEEEEeCCCC----CHHHHHHHHHHH
Confidence 99999986543 357777777765
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.2e-25 Score=174.49 Aligned_cols=147 Identities=18% Similarity=0.216 Sum_probs=113.2
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHHhc--CcEEEEEeCCC----
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTF-VCPTEVLALNEKIDEFHKI--GAEVVGVSVDS---- 126 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp-~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~d~---- 126 (247)
.+|.++|+|+| +|.+|++++|++|+||++||+|| ++||| +|+.+++.|.++++++++. ++++|+||.|+
T Consensus 7 P~~~~~PdF~L---~d~~G~~v~l~d~~Gk~vll~F~-~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dt 82 (170)
T 4hde_A 7 PLNWDLETFQF---TNQDGKPFGTKDLKGKVWVADFM-FTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDK 82 (170)
T ss_dssp CCCBCCCCCEE---ECTTSCEEEHHHHTTSCEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCC
T ss_pred CCCCcCCCcEE---ECCCCCEEeHHHhCCCEEEEEEE-CCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCccccc
Confidence 46899999999 77899999999999999999999 99997 8999999999999999854 48899999875
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcceeEEecCCc-hHH----HHhCCcccCC--C--ccceeEEEEcCCCcEEEEEec
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTH-EIS----RDYGVYLEDK--G--HSLRGLFIIDREGIVRQITLN 197 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~-~~~----~~~~~~~~~~--g--~~~p~~~lId~~G~v~~~~~~ 197 (247)
++.+++|.+ +++.+..+|.++++.+. .+. ..|+...... + .+.|++||||++|+|++.+.|
T Consensus 83 p~~l~~y~~----------~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g 152 (170)
T 4hde_A 83 PENLKAFIQ----------KFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSG 152 (170)
T ss_dssp HHHHHHHHT----------TTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEES
T ss_pred HHHHHHHHH----------HcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECC
Confidence 455555555 45555578899987652 222 2344433221 1 256899999999999998865
Q ss_pred CCCCCCCHHHHHHHHHhhh
Q psy15453 198 DLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 198 ~~~~~~~~~~il~~l~~l~ 216 (247)
... ...+++++.|+.|.
T Consensus 153 ~~~--~~~~~l~~~ik~Ll 169 (170)
T 4hde_A 153 ISN--TPYEDIIRDMKRLA 169 (170)
T ss_dssp SSS--CCHHHHHHHHHHHH
T ss_pred CCC--CCHHHHHHHHHHHh
Confidence 432 34688888888764
|
| >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=179.99 Aligned_cols=149 Identities=15% Similarity=0.238 Sum_probs=124.9
Q ss_pred cccCCCCCCceeeeeec--------CCc----eeEEcCC-CCCCeEEEEEEeCCCCCCcH-HHHHHHHHHHHHH-HhcCc
Q psy15453 53 AVVMKPAPYWKGTAVVD--------GNI----KEIKLTD-YRGKYLVFFFYPLDFTFVCP-TEVLALNEKIDEF-HKIGA 117 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d--------~~G----~~v~l~~-~~gk~vvl~F~~a~~Cp~C~-~~~~~l~~l~~~~-~~~~~ 117 (247)
+++|+++|+|++++... .+| +.++|++ ++||++||+|+|+.|||+|. .|++.+++.+++| +++|+
T Consensus 1 l~vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~ 80 (182)
T 1xiy_A 1 MKENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNF 80 (182)
T ss_dssp CCTTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCC
T ss_pred CCCCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 36899999999965311 156 7999998 69999999999999999999 9999999999999 99999
Q ss_pred E-EEEEeCCChHhHHHHHHHhhccccccccCCCCCc-ceeEEecCCchHHHHhCCcccCC--Cc---cceeEEEEcCCCc
Q psy15453 118 E-VVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKL-KIPLLSDLTHEISRDYGVYLEDK--GH---SLRGLFIIDREGI 190 (247)
Q Consensus 118 ~-vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~~~~~~~--g~---~~p~~~lId~~G~ 190 (247)
+ |++||.|++..+++|.++. +. +|++++|++++++++||+..+.. |+ ..+.+|||| +|+
T Consensus 81 ~~V~gvS~D~~~~~~~~~~~~-------------~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~ 146 (182)
T 1xiy_A 81 DDIYCITNNDIYVLKSWFKSM-------------DIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNI 146 (182)
T ss_dssp SEEEEEESSCHHHHHHHHHHT-------------TCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTE
T ss_pred cEEEEEeCCCHHHHHHHHHHc-------------CCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCE
Confidence 5 9999999999999999864 34 79999999999999999976542 32 468899999 999
Q ss_pred EEEEEecCCCC---------CCCHHHHHHHHHhh
Q psy15453 191 VRQITLNDLPV---------GRSVEETLRLVRAF 215 (247)
Q Consensus 191 v~~~~~~~~~~---------~~~~~~il~~l~~l 215 (247)
|+++++.+... ..+.+++++.|++.
T Consensus 147 V~~~~v~~~~~~~~~~~~~~~~~~~~vL~~L~~~ 180 (182)
T 1xiy_A 147 LVKMFQEKDKQHNIQTDPYDISTVNNVKEFLKNN 180 (182)
T ss_dssp EEEEEECSSCCTTCSSCCCSTTSHHHHHHHHHCC
T ss_pred EEEEEEeCCcccccccCcccCCCHHHHHHHHHhc
Confidence 99999765332 47889999988753
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-25 Score=175.77 Aligned_cols=151 Identities=11% Similarity=0.069 Sum_probs=118.0
Q ss_pred cccCCCCC-CceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHHh--cCcEEEEEeCCC--
Q psy15453 53 AVVMKPAP-YWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTF-VCPTEVLALNEKIDEFHK--IGAEVVGVSVDS-- 126 (247)
Q Consensus 53 ~~~G~~~P-~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp-~C~~~~~~l~~l~~~~~~--~~~~vl~Vs~d~-- 126 (247)
+.+|+++| +|++ .|.+|+++++++++||++||+|| ++||| +|+.+++.|++++++|++ .++++|+||.|+
T Consensus 1 m~~G~~~P~~f~l---~d~~G~~v~l~~~~Gk~vll~F~-~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d 76 (170)
T 3me7_A 1 MSLGTYVPGDITL---VDSYGNEFQLKNLKGKPIILSPI-YTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKD 76 (170)
T ss_dssp -CTTCBCCTTCEE---EETTCCEEEGGGGTTSCEEEEEE-CTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTC
T ss_pred CCCCCcCCCCeEE---EcCCcCEEchHHhCCCEEEEEEE-CCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCC
Confidence 35799999 9999 56699999999999999999999 99998 699999999999999974 469999999874
Q ss_pred -hHhHHHHHHHhhccccccccCCCCCcceeEEe--c--CCchHHHHhCCcccC--CC-ccceeEEEEcCCCcEEEEEecC
Q psy15453 127 -HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS--D--LTHEISRDYGVYLED--KG-HSLRGLFIIDREGIVRQITLND 198 (247)
Q Consensus 127 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--D--~~~~~~~~~~~~~~~--~g-~~~p~~~lId~~G~v~~~~~~~ 198 (247)
++..++|.+. +++....|+++. | ....+.+.||+.... .+ .+.|++||||++|+|++++.|.
T Consensus 77 ~~~~~~~~~~~----------~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~ 146 (170)
T 3me7_A 77 TLEDIKRFQKE----------YGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGV 146 (170)
T ss_dssp CHHHHHHHHHH----------TTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESS
T ss_pred CHHHHHHHHHH----------cCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCC
Confidence 5566666664 444345677654 2 226888888865321 11 2668999999999999988564
Q ss_pred CCCCCCHHHHHHHHHhhhcccc
Q psy15453 199 LPVGRSVEETLRLVRAFQYTDE 220 (247)
Q Consensus 199 ~~~~~~~~~il~~l~~l~~~~~ 220 (247)
..+.+++.+.|+++.....
T Consensus 147 ---~~~~~~i~~~l~~~~~~~~ 165 (170)
T 3me7_A 147 ---NYNYLEFVNALRLARGEGH 165 (170)
T ss_dssp ---SCCHHHHHHHHHHHTTCSC
T ss_pred ---CCCHHHHHHHHHHhhcccc
Confidence 3347999999998876544
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-25 Score=171.54 Aligned_cols=137 Identities=15% Similarity=0.240 Sum_probs=119.6
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC--CChHhHH
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV--DSHFTHR 131 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~--d~~~~~~ 131 (247)
.+|+++|+|++ .|.+|+.+++++++||++||.|| ++||++|+.+++.|++++++|+++++.+++|+. |+.+..+
T Consensus 3 ~~G~~~p~~~l---~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~ 78 (153)
T 2l5o_A 3 LDSKTAPAFSL---PDLHGKTVSNADLQGKVTLINFW-FPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVR 78 (153)
T ss_dssp -CCTTCCSCEE---ECTTSCEEEHHHHTTCEEEEEEE-CTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHH
T ss_pred CCCCCCCCcEe---ecCCCCCccHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHH
Confidence 57999999999 55699999999999999999999 999999999999999999999988999999994 6677778
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHH
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRL 211 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~ 211 (247)
+|.+.+ +++|+++.|.+..+.+.|++. .+|++||||++|+|++.+.|.. +.+++.+.
T Consensus 79 ~~~~~~-------------~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~ 135 (153)
T 2l5o_A 79 QYVKDY-------------GLPFTVMYDADKAVGQAFGTQ------VYPTSVLIGKKGEILKTYVGEP----DFGKLYQE 135 (153)
T ss_dssp HHHHHT-------------TCCSEEEECSSCHHHHHHTCC------SSSEEEEECSSSCCCEEEESSC----CHHHHHHH
T ss_pred HHHHHc-------------CCCceEEcCchHHHHHHcCCC------ccCeEEEECCCCcEEEEEcCCC----CHHHHHHH
Confidence 877753 578999999999999999998 8999999999999998886643 46777777
Q ss_pred HHhhhc
Q psy15453 212 VRAFQY 217 (247)
Q Consensus 212 l~~l~~ 217 (247)
|+.+..
T Consensus 136 l~~ll~ 141 (153)
T 2l5o_A 136 IDTAWR 141 (153)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-25 Score=176.91 Aligned_cols=126 Identities=21% Similarity=0.375 Sum_probs=109.2
Q ss_pred ccccccccCCCCCCceeeeeecCCc--eeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC-
Q psy15453 48 EGWTNAVVMKPAPYWKGTAVVDGNI--KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV- 124 (247)
Q Consensus 48 ~~~~~~~~G~~~P~f~l~~~~d~~G--~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~- 124 (247)
.....+.+|+++|+|++++ .+| +.+++++++||++||+|| ++|||+|+.++|.|++++++ ++.|++|+.
T Consensus 25 ~~~~~~~~G~~~P~f~l~~---~~g~~~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~vv~vs~~ 96 (176)
T 3kh7_A 25 SELPSALIGKPFPAFDLPS---VQDPARRLTEADLKGKPALVNVW-GTWCPSCRVEHPELTRLAEQ----GVVIYGINYK 96 (176)
T ss_dssp GGSTTTTTTSBCCCCEEEB---SSCTTSEEEGGGGCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCEEEEEEES
T ss_pred ccccccccCCcCCCcEecc---cCCCCceecHHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHC----CCEEEEEeCC
Confidence 3445689999999999955 477 899999999999999999 99999999999999998765 799999995
Q ss_pred CChHhHHHHHHHhhccccccccCCCCCccee-EEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 125 DSHFTHRAWINSLKKDNSLKKDNRLDKLKIP-LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 125 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
|+.+...+|.+.. +++|+ ++.|.+..+.+.|++. .+|++||||++|+|++.+.|..+
T Consensus 97 d~~~~~~~~~~~~-------------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~ 154 (176)
T 3kh7_A 97 DDNAAAIKWLNEL-------------HNPYLLSISDADGTLGLDLGVY------GAPETYLIDKQGIIRHKIVGVVD 154 (176)
T ss_dssp CCHHHHHHHHHHT-------------TCCCSEEEEETTCHHHHHHTCC------SSCEEEEECTTCBEEEEEESCCC
T ss_pred CCHHHHHHHHHHc-------------CCCCceEEECCcchHHHHcCCC------CCCeEEEECCCCeEEEEEcCCCC
Confidence 6677778887754 46776 5789999999999999 89999999999999999877654
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-25 Score=180.54 Aligned_cols=161 Identities=16% Similarity=0.229 Sum_probs=113.2
Q ss_pred ccccCCCC--CCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCC-cHHHHHHHHHHHHHHHhc---CcEEEEEeCC
Q psy15453 52 NAVVMKPA--PYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFV-CPTEVLALNEKIDEFHKI---GAEVVGVSVD 125 (247)
Q Consensus 52 ~~~~G~~~--P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~-C~~~~~~l~~l~~~~~~~---~~~vl~Vs~d 125 (247)
...+|+++ |+|++ .|.+|+.+++++++||++||+|| ++|||+ |+.++|.|++++++++++ +++||+||.|
T Consensus 12 ~~~~g~~~~~p~f~l---~d~~G~~v~l~~~~Gk~vlv~F~-at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D 87 (200)
T 2b7k_A 12 NRGYGKPSLGGPFHL---EDMYGNEFTEKNLLGKFSIIYFG-FSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCD 87 (200)
T ss_dssp ----CCCCCCCCCEE---EETTSCEEEGGGGTTSCEEEEEE-CTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESC
T ss_pred HhccCCCCcCCCEEE---EcCCCCEEeHHHcCCCEEEEEEE-CCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECC
Confidence 45678875 99999 55699999999999999999999 999997 999999999999999853 8999999998
Q ss_pred C----hHhHHHHHHHhhccccccccCCCCCcceeEEecC---CchHHHHhCCcccCC-----C-----ccceeEEEEcCC
Q psy15453 126 S----HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL---THEISRDYGVYLEDK-----G-----HSLRGLFIIDRE 188 (247)
Q Consensus 126 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~---~~~~~~~~~~~~~~~-----g-----~~~p~~~lId~~ 188 (247)
+ ++..++|.+. + +.+|+.+.+. ...+++.||+..... | .+.|++||||++
T Consensus 88 ~~~d~~~~~~~~~~~----------~---~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~ 154 (200)
T 2b7k_A 88 PARDSPAVLKEYLSD----------F---HPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPE 154 (200)
T ss_dssp TTTCCHHHHHHHHTT----------S---CTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTT
T ss_pred CCCCCHHHHHHHHHH----------c---CCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCC
Confidence 4 5566666653 2 4578877653 367899999863210 0 145789999999
Q ss_pred CcEEEEEecCCCCCCCHHHHHHHHHhhhcccccCCccCCCCc
Q psy15453 189 GIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQ 230 (247)
Q Consensus 189 G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~~~~~~~~~~~~ 230 (247)
|+|++.+.+..+.....+++.+.|+.+.. .+...-|+..|-
T Consensus 155 G~i~~~~~g~~~~~~~~~~i~~~l~~l~~-~~~~~~~~~~~~ 195 (200)
T 2b7k_A 155 GQFVDALGRNYDEKTGVDKIVEHVKSYVP-AEQRAKQKEAWY 195 (200)
T ss_dssp SCEEEEECTTCCTTHHHHHHHHHHHHCCC-C-----------
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHHhhh-hhhcchhHHHHH
Confidence 99999987666555555666677777654 344567888873
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-25 Score=174.93 Aligned_cols=139 Identities=13% Similarity=0.274 Sum_probs=105.0
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC------
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD------ 125 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d------ 125 (247)
.+++|+++|+|++ .|.+|+.+++++++||++||+|| ++||++|+.++|.|++++++|++++++||+|+.|
T Consensus 5 ~~~~g~~~p~f~l---~~~~g~~~~l~~~~gk~vll~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~ 80 (170)
T 2p5q_A 5 TSKNPESVHDFTV---KDAKENDVDLSIFKGKVLLIVNV-ASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEE 80 (170)
T ss_dssp -----CCGGGCEE---EBTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCC
T ss_pred cCCCCccccceEE---EcCCCCEecHHHhCCCEEEEEEE-eccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCC
Confidence 5678999999999 55699999999999999999999 9999999999999999999999889999999986
Q ss_pred --ChHhHHHHHH-HhhccccccccCCCCCcceeEE--ecCCchHH-HH--------hCCcccCCCccce---eEEEEcCC
Q psy15453 126 --SHFTHRAWIN-SLKKDNSLKKDNRLDKLKIPLL--SDLTHEIS-RD--------YGVYLEDKGHSLR---GLFIIDRE 188 (247)
Q Consensus 126 --~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l--~D~~~~~~-~~--------~~~~~~~~g~~~p---~~~lId~~ 188 (247)
+.+..++|.+ .+ +.+|+++ .|.++... +. +++. +..+| ++||||++
T Consensus 81 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~----~~~~p~~~~~~lid~~ 143 (170)
T 2p5q_A 81 PGTNDQITDFVCTRF-------------KSEFPIFDKIDVNGENASPLYRFLKLGKWGIF----GDDIQWNFAKFLVNKD 143 (170)
T ss_dssp CSCHHHHHHHHHHHT-------------CCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTT----CSCCCSTTCEEEECTT
T ss_pred CCCHHHHHHHHHHhc-------------CCCceeEeeeccCCCchHHHHHHHHhcCCCcc----CCcccccccEEEECCC
Confidence 4566677766 32 5688888 56665433 12 2441 01567 99999999
Q ss_pred CcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 189 GIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 189 G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
|+|++.+.+..+ .+++.+.|+.+
T Consensus 144 G~i~~~~~g~~~----~~~l~~~i~~l 166 (170)
T 2p5q_A 144 GQVVDRYYPTTS----PLSLERDIKQL 166 (170)
T ss_dssp SCEEEEECTTSC----GGGGHHHHHHH
T ss_pred CCEEEeeCCCCC----HHHHHHHHHHH
Confidence 999999866543 24455555544
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-25 Score=176.62 Aligned_cols=148 Identities=13% Similarity=0.166 Sum_probs=112.2
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC------
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD------ 125 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d------ 125 (247)
....|..+|+|++ .|.+|+.+++++++||++||+|| ++|||+|+.++|.|++++++|++++++||+|+.|
T Consensus 11 ~~~~~~~~p~f~l---~d~~G~~v~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~ 86 (180)
T 3kij_A 11 LKPKINSFYAFEV---KDAKGRTVSLEKYKGKVSLVVNV-ASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESE 86 (180)
T ss_dssp CCCCCCCGGGCEE---EBTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCC
T ss_pred hcCCcCcccceEE---ecCCCCEecHHHcCCCEEEEEEE-ecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCC
Confidence 3467899999999 56699999999999999999999 9999999999999999999999889999999965
Q ss_pred --ChHhHHHHHHH-hhccccccccCCCCCcceeEEecCC--chH-HHHhCCcccCCCcccee----EEEEcCCCcEEEEE
Q psy15453 126 --SHFTHRAWINS-LKKDNSLKKDNRLDKLKIPLLSDLT--HEI-SRDYGVYLEDKGHSLRG----LFIIDREGIVRQIT 195 (247)
Q Consensus 126 --~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~--~~~-~~~~~~~~~~~g~~~p~----~~lId~~G~v~~~~ 195 (247)
+.+..++|.+. + +.+|+++.+.+ +.. ...|+......+ .+|+ +||||++|+|++.+
T Consensus 87 ~d~~~~~~~~~~~~~-------------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~p~~~~~~~lid~~G~i~~~~ 152 (180)
T 3kij_A 87 PRPSKEVESFARKNY-------------GVTFPIFHKIKILGSEGEPAFRFLVDSSK-KEPRWNFWKYLVNPEGQVVKFW 152 (180)
T ss_dssp CSCHHHHHHHHHHHH-------------CCCSCBBCCCCCSSTTCCHHHHHHHHHHT-CCCSSTTCEEEECTTSCEEEEE
T ss_pred CCCHHHHHHHHHHhc-------------CCCCceeeeeeccCccccHHHHHHHhcCC-CCccccceEEEECCCCCEEEEE
Confidence 56777888775 4 56888865322 111 112221100000 3576 99999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHhhhc
Q psy15453 196 LNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 196 ~~~~~~~~~~~~il~~l~~l~~ 217 (247)
.+..+.....+++.+.|+++..
T Consensus 153 ~g~~~~~~l~~~i~~lL~~~~~ 174 (180)
T 3kij_A 153 RPEEPIEVIRPDIAALVRQVII 174 (180)
T ss_dssp CTTCCGGGTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhc
Confidence 7777666555666666766653
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-25 Score=177.51 Aligned_cols=133 Identities=11% Similarity=0.097 Sum_probs=104.4
Q ss_pred ccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC---
Q psy15453 50 WTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS--- 126 (247)
Q Consensus 50 ~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~--- 126 (247)
...+++|+++|+|++ .|.+|+.+++++++||++||+|| ++|||+|+.++|.|++++++|++++++||+|+.|.
T Consensus 20 ~~~~~~g~~~p~f~l---~~~~G~~v~l~~~~Gk~vlv~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~ 95 (185)
T 2gs3_A 20 FQSMRCARSMHEFSA---KDIDGHMVNLDKYRGFVCIVTNV-ASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGK 95 (185)
T ss_dssp SGGGGGCCCGGGCEE---EBTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTT
T ss_pred hhhccCCCCcCCcee---EcCCCCEeeHHHcCCCEEEEEEe-cCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCC
Confidence 346789999999999 55699999999999999999999 99999999999999999999998899999999762
Q ss_pred -----hHhHHHHHHHhhccccccccCCCCCcceeEEe--cCCchHHH-Hh----------CCcccCCCccceeEEEEcCC
Q psy15453 127 -----HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS--DLTHEISR-DY----------GVYLEDKGHSLRGLFIIDRE 188 (247)
Q Consensus 127 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--D~~~~~~~-~~----------~~~~~~~g~~~p~~~lId~~ 188 (247)
++..++|.+.+ +.+|+++. |.++.... .| |+... .-..+|++||||++
T Consensus 96 ~~~~~~~~~~~~~~~~-------------~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~-~i~~~P~~~lid~~ 161 (185)
T 2gs3_A 96 QEPGSNEEIKEFAAGY-------------NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGN-AIKWNFTKFLIDKN 161 (185)
T ss_dssp CCCSCHHHHHHHHHHT-------------TCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSS-SCCSSCCEEEECTT
T ss_pred CCCCCHHHHHHHHHHc-------------CCCCeeeeeeccCChhhhHHHHHHHhhcccccccCC-cccccceEEEECCC
Confidence 45667776643 56899987 44443322 33 32200 00136899999999
Q ss_pred CcEEEEEecCCC
Q psy15453 189 GIVRQITLNDLP 200 (247)
Q Consensus 189 G~v~~~~~~~~~ 200 (247)
|+|++.+.+..+
T Consensus 162 G~i~~~~~g~~~ 173 (185)
T 2gs3_A 162 GCVVKRYGPMEE 173 (185)
T ss_dssp SCEEEEECTTSC
T ss_pred CCEEEeeCCCCC
Confidence 999999866543
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-25 Score=177.08 Aligned_cols=143 Identities=11% Similarity=0.070 Sum_probs=110.5
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC-----
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD----- 125 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d----- 125 (247)
..+++|+++|+|++ .|.+|+.+++++++||++||+|| ++|||+|+.++|.|++++++|++++++||+|+.|
T Consensus 19 ~~~~~g~~~p~f~l---~~~~G~~~~l~~~~gk~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~ 94 (183)
T 2obi_A 19 DDWRCARSMHEFSA---KDIDGHMVNLDKYRGFVCIVTNV-ASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ 94 (183)
T ss_dssp CCGGGCCSGGGCEE---EBTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTC
T ss_pred cCCcccCcccceEE---EcCCCCEeeHHHcCCCEEEEEEe-CCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCC
Confidence 46789999999999 55699999999999999999999 9999999999999999999999889999999976
Q ss_pred ---ChHhHHHHHHHhhccccccccCCCCCcceeEEe--cCCchHHH-Hh----------CCcccCCCccceeEEEEcCCC
Q psy15453 126 ---SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS--DLTHEISR-DY----------GVYLEDKGHSLRGLFIIDREG 189 (247)
Q Consensus 126 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--D~~~~~~~-~~----------~~~~~~~g~~~p~~~lId~~G 189 (247)
+.+..++|.+.+ +.+|+++. |.++.... .| |+... .-..+|++||||++|
T Consensus 95 e~~~~~~~~~~~~~~-------------~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~-~i~~~P~~~lid~~G 160 (183)
T 2obi_A 95 EPGSNEEIKEFAAGY-------------NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGN-AIKWNFTKFLIDKNG 160 (183)
T ss_dssp CCSCHHHHHHHHHTT-------------TCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSS-SCCSTTCEEEECTTS
T ss_pred CCCCHHHHHHHHHHc-------------CCCceEEeeeccCCcchhHHHHHhhccCCCCCcccc-cccccceEEEECCCC
Confidence 456667776633 57899987 66554332 33 32200 001469999999999
Q ss_pred cEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 190 IVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 190 ~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+|++.+.+..+ .+++.+.|+.+
T Consensus 161 ~i~~~~~g~~~----~~~l~~~i~~l 182 (183)
T 2obi_A 161 CVVKRYGPMEE----PLVIEKDLPHY 182 (183)
T ss_dssp CEEEEECTTSC----THHHHTTSGGG
T ss_pred CEEEEeCCCCC----HHHHHHHHHHh
Confidence 99999866432 35555555543
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-25 Score=170.93 Aligned_cols=128 Identities=13% Similarity=0.146 Sum_probs=110.0
Q ss_pred CCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCC
Q psy15453 70 GNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRL 149 (247)
Q Consensus 70 ~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 149 (247)
.+|+.+++++++||++||+|| ++||++|+.++|.|++++++|++.++++++|+.|+.+...+|.+..
T Consensus 12 ~~G~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~------------ 78 (151)
T 3raz_A 12 KDNTPQSLQSLKAPVRIVNLW-ATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQT------------ 78 (151)
T ss_dssp TTCCEECGGGCCSSEEEEEEE-CTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHS------------
T ss_pred cCCCEecHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHc------------
Confidence 689999999999999999999 9999999999999999999998889999999999998888888854
Q ss_pred CCcceeEEecCC---chHHHHhC--CcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhccccc
Q psy15453 150 DKLKIPLLSDLT---HEISRDYG--VYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEH 221 (247)
Q Consensus 150 ~~~~~~~l~D~~---~~~~~~~~--~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~~~ 221 (247)
+++|+++.|.+ ..+.+.|| +. .+|++||||++|+|++.+.|..+ .+++.+.|+.+....+.
T Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~----~~~l~~~l~~l~~~~~~ 144 (151)
T 3raz_A 79 -PVSYPIWRYTGANSRNFMKTYGNTVG------VLPFTVVEAPKCGYRQTITGEVN----EKSLTDAVKLAHSKCRE 144 (151)
T ss_dssp -CCSSCEEEECCSCHHHHHHTTTCCSC------CSSEEEEEETTTTEEEECCSCCC----HHHHHHHHHHHHTC---
T ss_pred -CCCCceEecCccchHHHHHHhCCccC------CCCEEEEECCCCcEEEEECCCCC----HHHHHHHHHHHHHHhhc
Confidence 67899998774 56889999 66 88999999999999998866543 57777888877765443
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=168.88 Aligned_cols=144 Identities=19% Similarity=0.319 Sum_probs=118.7
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC-hHhH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS-HFTH 130 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~-~~~~ 130 (247)
.+.+|+++|+|++ .+.+|+.+++++++||++||+|| ++||++|+.++|.|++++++|+++++.+++|+.|. .+..
T Consensus 7 ~~~~g~~~p~~~l---~~~~g~~~~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~ 82 (165)
T 3or5_A 7 ADARPTPAPSFSG---VTVDGKPFSSASLKGKAYIVNFF-ATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNV 82 (165)
T ss_dssp CCCCCCBCCCCEE---ECTTSCEEEGGGGTTCEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHH
T ss_pred hhcCCCCCCCcee---eCCCCCEechhHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHH
Confidence 4678999999999 55699999999999999999999 99999999999999999999998889999999886 5666
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLR 210 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~ 210 (247)
++|.+.. +++|+++.|.+ .+.+.|+.........+|++||||++|+|++.+.|.. +.+++.+
T Consensus 83 ~~~~~~~-------------~~~~~~~~~~~-~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~----~~~~l~~ 144 (165)
T 3or5_A 83 KNYMKTQ-------------GIIYPVMMATP-ELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPR----SKADFDR 144 (165)
T ss_dssp HHHHHHH-------------TCCSCEEECCH-HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSCC----CHHHHHH
T ss_pred HHHHHHc-------------CCCCceEecCH-HHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCCC----CHHHHHH
Confidence 7777754 67899999876 8889994221111118899999999999999886654 3577777
Q ss_pred HHHhhhc
Q psy15453 211 LVRAFQY 217 (247)
Q Consensus 211 ~l~~l~~ 217 (247)
.|+.+..
T Consensus 145 ~l~~~l~ 151 (165)
T 3or5_A 145 IVKMALG 151 (165)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 7776653
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=169.24 Aligned_cols=132 Identities=16% Similarity=0.233 Sum_probs=110.3
Q ss_pred CCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCC-cHHHHHHHHHHHHHHHh----cCcEEEEEeCCC----hH
Q psy15453 58 PAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFV-CPTEVLALNEKIDEFHK----IGAEVVGVSVDS----HF 128 (247)
Q Consensus 58 ~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~-C~~~~~~l~~l~~~~~~----~~~~vl~Vs~d~----~~ 128 (247)
.+|+|++ .|.+|+++++++++||++||+|| ++||++ |+.++|.|++++++|++ .++++|+|+.|+ ++
T Consensus 2 ~ap~f~l---~~~~G~~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~ 77 (164)
T 2ggt_A 2 LGGPFSL---TTHTGERKTDKDYLGQWLLIYFG-FTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE 77 (164)
T ss_dssp CCCCCEE---EETTSCEEEGGGGTTCEEEEEEE-CTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHH
T ss_pred CCCCeEE---EeCCCCEEeHHHcCCCEEEEEEE-eCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHH
Confidence 5799999 55699999999999999999999 999998 99999999999999987 489999999986 45
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEe---cCCchHHHHhCCcccCCCccce---------------eEEEEcCCCc
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLS---DLTHEISRDYGVYLEDKGHSLR---------------GLFIIDREGI 190 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---D~~~~~~~~~~~~~~~~g~~~p---------------~~~lId~~G~ 190 (247)
..++|.+.+ +.+|+++. |....+.+.||+. ..| ++||||++|+
T Consensus 78 ~~~~~~~~~-------------~~~~~~l~~~~d~~~~~~~~~~v~------~~p~~~~~~~~~~~~~~~~~~lid~~G~ 138 (164)
T 2ggt_A 78 AIANYVKEF-------------SPKLVGLTGTREEVDQVARAYRVY------YSPGPKDEDEDYIVDHTIIMYLIGPDGE 138 (164)
T ss_dssp HHHHHHHTT-------------CSSCEEEECCHHHHHHHHHTTTCC------EEEEEECTTSCEEEEECCEEEEECTTSC
T ss_pred HHHHHHHHc-------------CCCeEEEeCCHHHHHHHHHhcCeE------EEecCCCCCCCeeEeccceEEEECCCCe
Confidence 566666632 56888885 3346799999997 556 8999999999
Q ss_pred EEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 191 VRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 191 v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
|++.+.+.. +.+++.+.|+.+.
T Consensus 139 i~~~~~g~~----~~~~l~~~l~~ll 160 (164)
T 2ggt_A 139 FLDYFGQNK----RKGEIAASIATHM 160 (164)
T ss_dssp EEEEEETTC----CHHHHHHHHHHHH
T ss_pred EEEEeCCCC----CHHHHHHHHHHHH
Confidence 999986543 3577888887765
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-25 Score=177.66 Aligned_cols=139 Identities=12% Similarity=0.211 Sum_probs=110.7
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC-----
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD----- 125 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d----- 125 (247)
..++.|+++|+|++ .|.+|+.+++++++||++||+|| ++|||+|+.++|.|++++++|++++++||+|+.|
T Consensus 20 s~~~~~~~~p~f~l---~~~~G~~~~l~~~~Gk~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~ 95 (190)
T 2vup_A 20 SHMSAASSIFDFEV---LDADHKPYNLVQHKGSPLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQ 95 (190)
T ss_dssp ----CCCSGGGSCC---BBTTSSBCCGGGGTTSCEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTC
T ss_pred ccCCCCCcccCeEE---EcCCCCEEEHHHcCCCEEEEEEe-cCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCC
Confidence 36788999999999 55699999999999999999999 9999999999999999999999889999999987
Q ss_pred ---ChHhHHHHH-HHhhccccccccCCCCCcceeEEe--cCCchHHH---------HhCCcccCCCccce------eEEE
Q psy15453 126 ---SHFTHRAWI-NSLKKDNSLKKDNRLDKLKIPLLS--DLTHEISR---------DYGVYLEDKGHSLR------GLFI 184 (247)
Q Consensus 126 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~--D~~~~~~~---------~~~~~~~~~g~~~p------~~~l 184 (247)
+++..++|. +.. +.+|+++. |.++.+.. .|++. .+| ++||
T Consensus 96 ~~~~~~~~~~~~~~~~-------------~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~------~~P~i~~~~~~~l 156 (190)
T 2vup_A 96 EPGNEEEIKEFVCTKF-------------KAEFPIMAKINVNGENAHPLYEYMKKTKPGIL------KTKAIKWNFTSFL 156 (190)
T ss_dssp CCSCHHHHHHHHHHHH-------------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGG------GCCSCCSTTCEEE
T ss_pred CCCCHHHHHHHHHHhc-------------CCCeEEEeecccCcccccHHHHHHHhhcCCcC------CCccccccceEEE
Confidence 566777777 543 57888886 55544322 24655 567 9999
Q ss_pred EcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 185 IDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 185 Id~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
||++|+|++.+.|..+ .+++.+.|+.+.
T Consensus 157 id~~G~i~~~~~g~~~----~~~l~~~i~~ll 184 (190)
T 2vup_A 157 IDRDGVPVERFSPGAS----VKDIEKKLIPLL 184 (190)
T ss_dssp ECTTSCEEEEECTTCC----HHHHHHHHHHHH
T ss_pred ECCCCcEEEEECCCCC----HHHHHHHHHHHH
Confidence 9999999999866443 466777776664
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=165.19 Aligned_cols=133 Identities=14% Similarity=0.279 Sum_probs=112.2
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC----Ch
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD----SH 127 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d----~~ 127 (247)
.+.+|+++|+|++ .+.+|+.+++++ +||++||.|| ++||++|+.+++.|+++++++++.++.+++|+.| +.
T Consensus 8 ~~~~g~~~p~~~l---~~~~g~~~~l~~-~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~ 82 (145)
T 3erw_A 8 EEKQPAVPAVFLM---KTIEGEDISIPN-KGQKTILHFW-TSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQ 82 (145)
T ss_dssp ----CCSCCEEEE---ECTTSCEEEESC-TTSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCH
T ss_pred cccCCCcCCCcee---ecCCCCEEeHHH-CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCH
Confidence 5688999999999 555999999999 9999999999 9999999999999999999998778999999986 45
Q ss_pred HhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHH
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEE 207 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~ 207 (247)
+..+.|.+.. +++|+++.|.+..+.+.|++. .+|+++|||++|+|++.+.|..+ .++
T Consensus 83 ~~~~~~~~~~-------------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~----~~~ 139 (145)
T 3erw_A 83 QVVEDFIKAN-------------KLTFPIVLDSKGELMKEYHII------TIPTSFLLNEKGEIEKTKIGPMT----AEQ 139 (145)
T ss_dssp HHHHHHHHHT-------------TCCSCEEECSSSHHHHHTTCC------EESEEEEECTTCCEEEEEESCCC----HHH
T ss_pred HHHHHHHHHc-------------CCceeEEEcCchhHHHhcCcC------ccCeEEEEcCCCcEEEEEcCCcC----HHH
Confidence 5666666643 578999999999999999999 89999999999999998876543 455
Q ss_pred HHHHH
Q psy15453 208 TLRLV 212 (247)
Q Consensus 208 il~~l 212 (247)
+.+.|
T Consensus 140 l~~~l 144 (145)
T 3erw_A 140 LKEWT 144 (145)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 55544
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-24 Score=165.06 Aligned_cols=136 Identities=15% Similarity=0.209 Sum_probs=116.5
Q ss_pred cccCCCCCCcee--eeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC-----
Q psy15453 53 AVVMKPAPYWKG--TAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD----- 125 (247)
Q Consensus 53 ~~~G~~~P~f~l--~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d----- 125 (247)
+++|+++|+|++ .++ +|+.+++++++||++||.|| ++||++|+.++|.|++++++|+++ +.+++|+.|
T Consensus 1 l~~g~~~P~f~~~~~~~---~g~~~~~~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~~~~~~~~ 75 (148)
T 2b5x_A 1 MKLRQPMPELTGEKAWL---NGEVTREQLIGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRSEDD 75 (148)
T ss_dssp CCTTCBCCCCCCCSEEE---SCCCCHHHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCSTTT
T ss_pred CCCCCCCCCCccccccc---cCcccchhhcCCCEEEEEEE-cCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEEcCCCccc
Confidence 467999999998 444 89999999999999999999 999999999999999999999875 999999987
Q ss_pred -ChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCC
Q psy15453 126 -SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRS 204 (247)
Q Consensus 126 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~ 204 (247)
+.+...++.+.+ +.+|+++.|.+..+.+.|++. .+|+++|||++|++++.+.|..+
T Consensus 76 ~~~~~~~~~~~~~-------------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~---- 132 (148)
T 2b5x_A 76 LDPGKIKETAAEH-------------DITQPIFVDSDHALTDAFENE------YVPAYYVFDKTGQLRHFQAGGSG---- 132 (148)
T ss_dssp SSHHHHHHHHHHT-------------TCCSCEEECSSCHHHHHTCCC------CSSEEEEECTTCBEEEEEESCST----
T ss_pred cCHHHHHHHHHHc-------------CCCcceEECCchhHHHHhCCC------CCCEEEEECCCCcEEEEecCCCC----
Confidence 456667766643 578999999999999999998 89999999999999998866532
Q ss_pred HHHHHHHHHhhh
Q psy15453 205 VEETLRLVRAFQ 216 (247)
Q Consensus 205 ~~~il~~l~~l~ 216 (247)
.+++.+.|+.+.
T Consensus 133 ~~~l~~~l~~~l 144 (148)
T 2b5x_A 133 MKMLEKRVNRVL 144 (148)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 466667776654
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-25 Score=179.01 Aligned_cols=142 Identities=13% Similarity=0.208 Sum_probs=106.5
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC----
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS---- 126 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~---- 126 (247)
..+..+.++|+|++ .|.+|+.++|++++||++||+|| ++|||+|+.++|.|++++++|++++++||+|+.|.
T Consensus 18 ~~~~~~~~~p~f~l---~d~~G~~~~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~ 93 (187)
T 3dwv_A 18 KKMSAASSIFDFEV---LDADHKPYNLVQHKGSPLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQ 93 (187)
T ss_dssp --CTTCCSGGGSCC---BBTTSCBCCGGGGTTSCEEEEEE-CCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSC
T ss_pred hhhcCCCccCCeEE---EcCCCCEeeHHHhCCCEEEEEEe-cCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCC
Confidence 35778899999999 56699999999999999999999 99999999999999999999998899999999873
Q ss_pred ----hHhHHHHHHHhhccccccccCCCCCcceeEEe--cCCchHH-HHh--------CCcccCCCc-cce---eEEEEcC
Q psy15453 127 ----HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS--DLTHEIS-RDY--------GVYLEDKGH-SLR---GLFIIDR 187 (247)
Q Consensus 127 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--D~~~~~~-~~~--------~~~~~~~g~-~~p---~~~lId~ 187 (247)
.+..++|.+. +. +.+|+++. |.++... ..| +.. +. .+| ++||||+
T Consensus 94 e~~~~~~~~~~~~~---------~~---~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~----~~~~iP~~~~~~liD~ 157 (187)
T 3dwv_A 94 EPGNEEEIKEFVCT---------KF---KAEFPIMAKINVNGENAHPLYEYMKKTKPGIL----ATKAIKWNFTSFLIDR 157 (187)
T ss_dssp SSSBTTHHHHSCCB---------CC---CCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSB----SSSSCCSTTCEEEECT
T ss_pred CCCCHHHHHHHHHh---------cc---CCCCceeeccccCCcchhHHHHHHHhhcCCcc----CCCccccceeEEEECC
Confidence 3333333321 11 57888886 4443322 122 222 11 567 9999999
Q ss_pred CCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 188 EGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 188 ~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+|+|++.+.+.. +.+++.+.|+.+.
T Consensus 158 ~G~i~~~~~g~~----~~~~l~~~i~~lL 182 (187)
T 3dwv_A 158 DGVPVERFSPGA----SVKDIEEKLIPLL 182 (187)
T ss_dssp TSCEEEEECTTC----CHHHHHHHHHHHC
T ss_pred CCCEEEEECCCC----CHHHHHHHHHHHH
Confidence 999999986543 3566777776664
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=178.10 Aligned_cols=148 Identities=10% Similarity=0.020 Sum_probs=104.4
Q ss_pred cccCCCCCCceeeeeecCC-ceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC------
Q psy15453 53 AVVMKPAPYWKGTAVVDGN-IKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD------ 125 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~-G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d------ 125 (247)
...++++|+|++ .|.+ |+.++|++++||++||+|| ++|||+|+.++|.|++++++|++++++||+|+.|
T Consensus 20 ~~~~~~~p~f~l---~~~~~G~~v~l~~~~Gk~vlv~Fw-atwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e 95 (208)
T 2f8a_A 20 FQSMQSVYAFSA---RPLAGGEPVSLGSLRGKVLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQE 95 (208)
T ss_dssp --CCCCGGGCEE---CBTTCSSCEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTT
T ss_pred hhhcCccCceEe---eeCCCCCCccHHHcCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccC
Confidence 455788999999 4558 9999999999999999999 9999999999999999999999889999999986
Q ss_pred --ChHhHHHHHHHhhccccccccCCCCCcceeEEecCC--ch----HHH----HhCCc---------------ccC---C
Q psy15453 126 --SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT--HE----ISR----DYGVY---------------LED---K 175 (247)
Q Consensus 126 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~--~~----~~~----~~~~~---------------~~~---~ 175 (247)
+.+.+++|.+.... ..-.+.+|+++.|.+ +. +.. .++.. ... .
T Consensus 96 ~d~~~~i~~f~~~~~~-------~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (208)
T 2f8a_A 96 NAKNEEILNSLKYVRP-------GGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRN 168 (208)
T ss_dssp CSCHHHHHHHHHHTSS-------CTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTT
T ss_pred CCCHHHHHHHHHhccc-------ccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccC
Confidence 34566676652100 001167899986533 22 221 22110 000 0
Q ss_pred C-ccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 176 G-HSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 176 g-~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+ ...|++||||++|+|++.+.+..+. +++.+.|+.+
T Consensus 169 ~i~~~p~tflID~~G~i~~~~~g~~~~----~~l~~~I~~l 205 (208)
T 2f8a_A 169 DVAWNFEKFLVGPDGVPLRRYSRRFQT----IDIEPDIEAL 205 (208)
T ss_dssp CCCSTTCEEEECTTSCEEEEECTTSCG----GGGHHHHHHH
T ss_pred ccccCceEEEEcCCCcEEEEeCCCCCH----HHHHHHHHHH
Confidence 0 1459999999999999998765543 3444444443
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-24 Score=187.84 Aligned_cols=151 Identities=21% Similarity=0.222 Sum_probs=125.7
Q ss_pred cccccCCCCCCce-----eeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 51 TNAVVMKPAPYWK-----GTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 51 ~~~~~G~~~P~f~-----l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
..+.+|+++|+|+ + .+.+|+.+++++++||++||+|| ++||++|+.++|.|++++++|++++++||+|+.|
T Consensus 49 ~~l~vG~~aPdF~~~~~wL---~d~dG~~vsLsdl~GK~vLl~F~-atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d 124 (352)
T 2hyx_A 49 AQLESCGTAPDLKGITGWL---NTPGNKPIDLKSLRGKVVLIDFW-AYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTP 124 (352)
T ss_dssp SSCCCCCBCCCCCSCCEEE---SSGGGCCCCGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred cccCCCCcCCCcccccccc---CCCCCCEEcHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECC
Confidence 4578999999999 6 56699999999999999999999 9999999999999999999999889999999975
Q ss_pred ------ChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 126 ------SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 126 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
+++..++|.+.+ +++|+++.|.+..+.+.|++. .+|++||||++|+|++.+.|..
T Consensus 125 ~~~~~d~~~~~~~~~~~~-------------~l~fpv~~D~~~~l~~~ygV~------~~Pt~~lID~~G~Iv~~~~G~~ 185 (352)
T 2hyx_A 125 EYAFEKVPGNVAKGAANL-------------GISYPIALDNNYATWTNYRNR------YWPAEYLIDATGTVRHIKFGEG 185 (352)
T ss_dssp SSGGGGCHHHHHHHHHHH-------------TCCSCEEECTTSHHHHHTTCC------EESEEEEECTTSBEEEEEESBC
T ss_pred cccccCCHHHHHHHHHHc-------------CCCccEEeCCcHHHHHHcCCC------ccCEEEEEeCCCeEEEEEcCCC
Confidence 456667777654 578999999999999999998 8999999999999999987754
Q ss_pred CCCCCHHHHHHHHHhhhcccccCCccCCC
Q psy15453 200 PVGRSVEETLRLVRAFQYTDEHGEACPSG 228 (247)
Q Consensus 200 ~~~~~~~~il~~l~~l~~~~~~~~~~~~~ 228 (247)
+ .+++.+.|+.+......+...|..
T Consensus 186 ~----~~~l~~~I~~lL~e~~~~~~lpap 210 (352)
T 2hyx_A 186 D----YNVTETLVRQLLNDAKPGVKLPQP 210 (352)
T ss_dssp C----HHHHHHHHHHHHHHHSTTCCCCSC
T ss_pred C----HHHHHHHHHHHHhhccCCCCCCCC
Confidence 3 566666666655433333334433
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-24 Score=167.51 Aligned_cols=139 Identities=22% Similarity=0.252 Sum_probs=118.3
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC---CChH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV---DSHF 128 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~---d~~~ 128 (247)
.+.+|+++|+|++ .+.+|+.+++++++ |++||+|| ++||++|+.+++.|++++++| ++++++|+. ++.+
T Consensus 4 ~l~~g~~~p~f~l---~~~~g~~~~l~~~~-k~vll~f~-~~~C~~C~~~~~~l~~l~~~~---~v~~v~v~~d~~~~~~ 75 (154)
T 3ia1_A 4 AVKPGEPLPDFLL---LDPKGQPVTPATVS-KPAVIVFW-ASWCTVCKAEFPGLHRVAEET---GVPFYVISREPRDTRE 75 (154)
T ss_dssp CCCSBEECCCCCE---ECTTSCEECTTTSC-SSEEEEEE-CTTCHHHHHHHHHHHHHHHHH---CCCEEEEECCTTCCHH
T ss_pred cCCCCCcCCceEE---ECCCCCEechHHcC-CeEEEEEE-cccChhHHHHHHHHHHHHHHc---CCeEEEEeCCCcccHH
Confidence 5789999999999 56699999999999 99999999 999999999999999999999 899999999 5555
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEec---CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCH
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSD---LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSV 205 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D---~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~ 205 (247)
..++|.+.. +.+|+++.| ....+.+.|++. .+|++||||++|+|++.+.|..+ .
T Consensus 76 ~~~~~~~~~-------------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~----~ 132 (154)
T 3ia1_A 76 VVLEYMKTY-------------PRFIPLLASDRDRPHEVAARFKVL------GQPWTFVVDREGKVVALFAGRAG----R 132 (154)
T ss_dssp HHHHHHTTC-------------TTEEECBCCSSCCHHHHHTTSSBC------SSCEEEEECTTSEEEEEEESBCC----H
T ss_pred HHHHHHHHc-------------CCCcccccccccchHHHHHHhCCC------cccEEEEECCCCCEEEEEcCCCC----H
Confidence 666665532 579999998 668999999998 89999999999999999866543 6
Q ss_pred HHHHHHHHhhhccccc
Q psy15453 206 EETLRLVRAFQYTDEH 221 (247)
Q Consensus 206 ~~il~~l~~l~~~~~~ 221 (247)
+++.+.|+.+.....+
T Consensus 133 ~~l~~~l~~~~~~~~~ 148 (154)
T 3ia1_A 133 EALLDALLLAGADLEG 148 (154)
T ss_dssp HHHHHHHHHTTCCC--
T ss_pred HHHHHHHHhccCcccc
Confidence 7888888887654443
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=165.17 Aligned_cols=137 Identities=17% Similarity=0.276 Sum_probs=110.1
Q ss_pred CCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCC-cHHHHHHHHHHHHHHHh----cCcEEEEEeCCC----hHhH
Q psy15453 60 PYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFV-CPTEVLALNEKIDEFHK----IGAEVVGVSVDS----HFTH 130 (247)
Q Consensus 60 P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~-C~~~~~~l~~l~~~~~~----~~~~vl~Vs~d~----~~~~ 130 (247)
|+|++ .|.+|+.+++++++||++||+|| ++||++ |+.++|.|++++++|++ .+++||+|+.|+ ++..
T Consensus 7 p~f~l---~~~~G~~~~l~~~~gk~vll~F~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~ 82 (171)
T 2rli_A 7 GDFHL---LDHRGRARCKADFRGQWVLMYFG-FTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAM 82 (171)
T ss_dssp SCCEE---EETTSCEEETTTTTTSEEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHH
T ss_pred CCeEE---EeCCCCEEeHHHhCCCEEEEEEE-cCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHH
Confidence 89999 55699999999999999999999 999997 99999999999999975 589999999874 5566
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCC---chHHHHhCCcccCC------C---ccceeEEEEcCCCcEEEEEecC
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLT---HEISRDYGVYLEDK------G---HSLRGLFIIDREGIVRQITLND 198 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~---~~~~~~~~~~~~~~------g---~~~p~~~lId~~G~v~~~~~~~ 198 (247)
++|.+.+ +.+|+++.|.. ..+.+.||+..... + .+.|++||||++|+|++.+.+.
T Consensus 83 ~~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~ 149 (171)
T 2rli_A 83 ARYVQDF-------------HPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRS 149 (171)
T ss_dssp HHHHHTT-------------CTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESS
T ss_pred HHHHHHc-------------CCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCC
Confidence 6666643 56889998754 57899999872210 0 1234999999999999998665
Q ss_pred CCCCCCHHHHHHHHHhhhc
Q psy15453 199 LPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 199 ~~~~~~~~~il~~l~~l~~ 217 (247)
. +.+++.+.|+.+..
T Consensus 150 ~----~~~~l~~~l~~ll~ 164 (171)
T 2rli_A 150 R----SAEQISDSVRRHMA 164 (171)
T ss_dssp C----CHHHHHHHHHHHHH
T ss_pred C----CHHHHHHHHHHHHH
Confidence 4 35777777777654
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=174.38 Aligned_cols=148 Identities=12% Similarity=0.090 Sum_probs=106.5
Q ss_pred cccCCCCCCceeeeeecCC-ceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC------
Q psy15453 53 AVVMKPAPYWKGTAVVDGN-IKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD------ 125 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~-G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d------ 125 (247)
...+..+|+|++ .|.+ |+.++|++|+||++||+|| |+|||+|+ ++|.|++++++|+++|++||+|+.|
T Consensus 29 ~~~~~~~pdF~l---~d~~~G~~v~Lsd~~GKvvll~Fw-At~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e 103 (215)
T 2i3y_A 29 KDEKGTIYDYEA---IALNKNEYVSFKQYVGKHILFVNV-ATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQE 103 (215)
T ss_dssp CCCCCCGGGCEE---EBSSSSCEEEGGGGTTSEEEEEEE-CSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCC
T ss_pred ccccCCcCCcEe---eeCCCCCEEcHHHhCCCEEEEEEe-CCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCC
Confidence 455678999999 5568 9999999999999999999 99999999 9999999999999889999999965
Q ss_pred --ChHhHHHHHHHhhccccccccCCCCCcceeEEecCC--chH-HHHhCCcccC---------------------CC-cc
Q psy15453 126 --SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT--HEI-SRDYGVYLED---------------------KG-HS 178 (247)
Q Consensus 126 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~--~~~-~~~~~~~~~~---------------------~g-~~ 178 (247)
+.+++++|.+..++ -. . .+++||++.|.+ +.. ...|+..... .. ..
T Consensus 104 ~~~~~~i~~f~~~~~~---~~-~---~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~ 176 (215)
T 2i3y_A 104 PGDNKEILPGLKYVRP---GG-G---FVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRW 176 (215)
T ss_dssp CSCHHHHHHHHHHTSS---CT-T---CCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCS
T ss_pred CCCHHHHHHHHHhccc---hh-c---cCccceeEeeeccCCcccchHHHHHHhhCccccccccccccccccccccccccc
Confidence 34566777662100 00 1 167999997643 221 1222211000 00 02
Q ss_pred ceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 179 LRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 179 ~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
.|++||||++|+|++.+.+..+ .+++.+.|+.+.
T Consensus 177 npttfLID~~G~vv~~~~g~~~----~~~l~~~I~~ll 210 (215)
T 2i3y_A 177 NFEKFLVGPDGIPVMRWSHRAT----VSSVKTDILAYL 210 (215)
T ss_dssp TTCEEEECTTSCEEEEECTTSC----HHHHHHHHHHHG
T ss_pred CceEEEECCCCeEEEEeCCCCC----HHHHHHHHHHHH
Confidence 3799999999999999865433 467777777665
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-24 Score=169.03 Aligned_cols=135 Identities=15% Similarity=0.229 Sum_probs=116.1
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC-----
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD----- 125 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d----- 125 (247)
....+|+++|+|++ .|.+|+.+++++++||++||.|| ++||++|+.++|.|.+++++|+ ++.|++|+.|
T Consensus 9 ~~~~~g~~~p~~~l---~~~~g~~~~l~~~~gk~~lv~F~-~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~~d~~~~~ 82 (165)
T 3ha9_A 9 HSEEVLEREASFSL---TTIDGEVISLNNVGGDVVILWFM-AAWCPSCVYMADLLDRLTEKYR--EISVIAIDFWTAEAL 82 (165)
T ss_dssp HHHHHHHHHHCCCE---EBTTSCEECGGGCCSSEEEEEEE-CTTCTTHHHHHHHHHHHHHHCT--TEEEEEEECCSHHHH
T ss_pred ccccccCcCCCCEe---ecCCCCEeeHHHhCCCEEEEEEE-CCCCcchhhhHHHHHHHHHHcC--CcEEEEEEecccccc
Confidence 35688999999999 55599999999999999999999 9999999999999999999998 8999999997
Q ss_pred --------------ChHhHHHHHHHhhccccccccCCCCCc-ceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCc
Q psy15453 126 --------------SHFTHRAWINSLKKDNSLKKDNRLDKL-KIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGI 190 (247)
Q Consensus 126 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~ 190 (247)
+.+..++|.+.+ ++ +|+++.| +..+.+.|++. .+|+++|||++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~d-~~~~~~~~~v~------~~P~~~lid~~G~ 142 (165)
T 3ha9_A 83 KALGLNKPGYPPPDTPEMFRKFIANY-------------GDPSWIMVMD-DGSLVEKFNVR------SIDYIVIMDKSSN 142 (165)
T ss_dssp HHHTCCSTTSCCCCCHHHHHHHHHHH-------------SCTTSEEEEC-CSHHHHHTTCC------SSSEEEEEETTCC
T ss_pred cccccccccCCCCCCHHHHHHHHHHc-------------CCCCeeEEeC-hHHHHHHhCCC------CceEEEEEcCCCc
Confidence 566677777654 56 9999999 99999999999 8999999999999
Q ss_pred EEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 191 VRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 191 v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
|++ .|..+ +.+++.+.|+.+.
T Consensus 143 i~~--~g~~~---~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 143 VLY--AGTTP---SLGELESVIKSVQ 163 (165)
T ss_dssp EEE--EEESC---CHHHHHHHHHHC-
T ss_pred EEE--eCCCC---CHHHHHHHHHHHh
Confidence 998 34432 3577777777653
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=163.34 Aligned_cols=141 Identities=19% Similarity=0.253 Sum_probs=117.2
Q ss_pred ccccCCCCC-CceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh-Hh
Q psy15453 52 NAVVMKPAP-YWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH-FT 129 (247)
Q Consensus 52 ~~~~G~~~P-~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~-~~ 129 (247)
.+.+|+++| +|++ .+.+|+.+++++++||++||+|| ++||++|+.+++.|++++++++++++.+++|+.|.. +.
T Consensus 2 ~l~~G~~~p~~f~l---~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~ 77 (152)
T 2lja_A 2 SLRSGNPSAASFSY---PDINGKTVSLADLKGKYIYIDVW-ATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKA 77 (152)
T ss_dssp CTTTTCCCSSSCEE---EETTTEEEESTTTTTSEEEEEEC-CSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHH
T ss_pred ccccCCCCCcccEe---ecCCCCEeeHHHcCCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHH
Confidence 467899999 9999 45599999999999999999999 999999999999999999999888899999999874 45
Q ss_pred HHHHHHHhhccccccccCCCCCcc-eeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHH
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLK-IPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEET 208 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~i 208 (247)
.+++.+.. +++ ++++.|.+..+.+.|++. .+|+++|||++|+|++.+.|.. +.+++
T Consensus 78 ~~~~~~~~-------------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l 134 (152)
T 2lja_A 78 WENMVTKD-------------QLKGIQLHMGTDRTFMDAYLIN------GIPRFILLDRDGKIISANMTRP----SDPKT 134 (152)
T ss_dssp HHHHHHHH-------------TCCSEEEECSSCTHHHHHTTCC------SSCCEEEECTTSCEEESSCCCT----TCHHH
T ss_pred HHHHHHhc-------------CCCCceeecCcchhHHHHcCcC------CCCEEEEECCCCeEEEccCCCC----CHHHH
Confidence 56666643 233 577788889999999998 8999999999999998764432 34677
Q ss_pred HHHHHhhhccc
Q psy15453 209 LRLVRAFQYTD 219 (247)
Q Consensus 209 l~~l~~l~~~~ 219 (247)
.+.|+.+....
T Consensus 135 ~~~l~~~~~~~ 145 (152)
T 2lja_A 135 AEKFNELLGLE 145 (152)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHhccc
Confidence 77777765443
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=173.11 Aligned_cols=132 Identities=14% Similarity=0.194 Sum_probs=97.2
Q ss_pred CCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC--------Ch
Q psy15453 56 MKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD--------SH 127 (247)
Q Consensus 56 G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d--------~~ 127 (247)
|..+|+|++ .|.+|+.+++++++||++||+|| ++||++|+ ++|.|++++++|++++++||+|+.| +.
T Consensus 9 ~~~~~~f~l---~d~~G~~~~l~~~~Gk~vll~F~-a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~ 83 (171)
T 3cmi_A 9 MSEFYKLAP---VDKKGQPFPFDQLKGKVVLIVNV-ASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSD 83 (171)
T ss_dssp -CGGGGCCC---BBTTSCBCCGGGGTTCEEEEEEE-ESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC-------
T ss_pred hhheeeeEE---EcCCCCEecHHHcCCCEEEEEEE-ecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCH
Confidence 567899999 56699999999999999999999 99999999 9999999999999889999999974 34
Q ss_pred HhHHHHH-HHhhccccccccCCCCCcceeEEecCC--ch-HH--------HHhCCcccCCCccce------eEEEEcCCC
Q psy15453 128 FTHRAWI-NSLKKDNSLKKDNRLDKLKIPLLSDLT--HE-IS--------RDYGVYLEDKGHSLR------GLFIIDREG 189 (247)
Q Consensus 128 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~--~~-~~--------~~~~~~~~~~g~~~p------~~~lId~~G 189 (247)
+..++|. +. . +.+|+++.|.+ +. .. +.|++. .+| ++||||++|
T Consensus 84 ~~~~~~~~~~----------~---~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~------~~P~i~~~~~~~lid~~G 144 (171)
T 3cmi_A 84 EEIAQFCQLN----------Y---GVTFPIMKKIDVNGGNEDPVYKFLKSQKSGML------GLRGIKWNFEKFLVDKKG 144 (171)
T ss_dssp ------------------------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSS------SCCSCCSTTCEEEECSSS
T ss_pred HHHHHHHHhc----------c---CCCceEEeeccCCCccchHHHHHHHhccCCcC------CCCcccccceEEEECCCC
Confidence 4555555 42 2 56899998644 22 22 245655 678 999999999
Q ss_pred cEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 190 IVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 190 ~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+|++.+.|..+. +++.+.|+.+
T Consensus 145 ~i~~~~~g~~~~----~~l~~~i~~l 166 (171)
T 3cmi_A 145 KVYERYSSLTKP----SSLSETIEEL 166 (171)
T ss_dssp CEEEEECTTSCG----GGGHHHHHHH
T ss_pred CEEEEeCCCCCH----HHHHHHHHHH
Confidence 999998665432 3444445444
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-24 Score=169.84 Aligned_cols=142 Identities=18% Similarity=0.278 Sum_probs=117.4
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCC-cHHHHHHHHHHHHHHHhc---CcEEEEEeCCC--
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFV-CPTEVLALNEKIDEFHKI---GAEVVGVSVDS-- 126 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~-C~~~~~~l~~l~~~~~~~---~~~vl~Vs~d~-- 126 (247)
..+|+++|+|++ .|.+| .+++++++||++||+|| ++||++ |+.++|.|++++++|+++ +++||+|+.|+
T Consensus 10 ~~~G~~~p~f~l---~~~~g-~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~ 84 (172)
T 2k6v_A 10 RLLNPKPVDFAL---EGPQG-PVRLSQFQDKVVLLFFG-FTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPER 84 (172)
T ss_dssp EEEEEEECCCEE---ECSSS-EEEGGGSTTSEEEEEEE-CTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTT
T ss_pred cccCCCCCCeEE---EcCCC-CCcHHHhCCCEEEEEEE-CCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCC
Confidence 456888999999 56699 99999999999999999 999997 999999999999999865 79999999764
Q ss_pred --hHhHHHHHHHhhccccccccCCCCCcceeEEecCC---chHHHHhCCcccCCC---------ccceeEEEEcCCCcEE
Q psy15453 127 --HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT---HEISRDYGVYLEDKG---------HSLRGLFIIDREGIVR 192 (247)
Q Consensus 127 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~---~~~~~~~~~~~~~~g---------~~~p~~~lId~~G~v~ 192 (247)
++..++|.+.+ +.+|+++.|++ ..+.+.||+.....+ .++|++|||| +|+|+
T Consensus 85 d~~~~~~~~~~~~-------------~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~ 150 (172)
T 2k6v_A 85 DPPEVADRYAKAF-------------HPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLV 150 (172)
T ss_dssp CCHHHHHHHHHHH-------------CTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEE
T ss_pred CCHHHHHHHHHHh-------------CCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEE
Confidence 56777777754 57999999988 689999987532210 2679999999 99999
Q ss_pred EEEecCCCCCCCHHHHHHHHHhh
Q psy15453 193 QITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 193 ~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+.+.+.. ..+.+++.+.|+.+
T Consensus 151 ~~~~g~~--~~~~~~l~~~l~~l 171 (172)
T 2k6v_A 151 LLYSPDK--AEATDRVVADLQAL 171 (172)
T ss_dssp EEECHHH--HTCHHHHHHHHHHC
T ss_pred EEECCCC--CCCHHHHHHHHHHh
Confidence 9986654 23568888888765
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-26 Score=178.18 Aligned_cols=142 Identities=19% Similarity=0.221 Sum_probs=115.8
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHH-HHHHHH-hcCcEEEEEeCCCh-H
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNE-KIDEFH-KIGAEVVGVSVDSH-F 128 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~-l~~~~~-~~~~~vl~Vs~d~~-~ 128 (247)
.+.+|+++|+|++. |.+|+.+++++++||++||+|| ++||++|+.++|.|++ ++++++ +.++.+++|+.|.. +
T Consensus 6 ~l~~g~~~p~f~l~---~~~g~~~~l~~~~gk~vll~f~-a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~ 81 (159)
T 2ls5_A 6 IVRIGEMAPDFTIT---LTDGKQVTLSSLRGKVVMLQFT-ASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLE 81 (159)
Confidence 57899999999994 5599999999999999999999 9999999999999998 999998 77899999998864 3
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHH
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEET 208 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~i 208 (247)
..++|.+.. +.+|+++.|.+..+.+.|++... .+|++||||++|+|++.+.+. ...+++++
T Consensus 82 ~~~~~~~~~-------------~~~~~~~~d~~~~~~~~~~~~~~----~~P~~~lid~~G~i~~~~~g~--~~~~l~~~ 142 (159)
T 2ls5_A 82 KVLAFAKST-------------GVTYPLGLDPGADIFAKYALRDA----GITRNVLIDREGKIVKLTRLY--NEEEFASL 142 (159)
Confidence 455555532 57999999999999999996522 589999999999999987552 22345555
Q ss_pred HHHHHhhh
Q psy15453 209 LRLVRAFQ 216 (247)
Q Consensus 209 l~~l~~l~ 216 (247)
++.|....
T Consensus 143 l~~l~~~~ 150 (159)
T 2ls5_A 143 VQQINEML 150 (159)
Confidence 55554443
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=157.54 Aligned_cols=130 Identities=20% Similarity=0.322 Sum_probs=108.4
Q ss_pred CCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEe------CCChHhHH
Q psy15453 58 PAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVS------VDSHFTHR 131 (247)
Q Consensus 58 ~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs------~d~~~~~~ 131 (247)
++|+|++ .|.+|+.+++++++||++||.|| ++||++|+.+++.|++++++++ .++.+++|+ .++.+...
T Consensus 1 ~~p~f~l---~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~v~i~~~~~~~~~~~~~~~ 75 (138)
T 4evm_A 1 EVADFEL---MGVDGKTYRLSDYKGKKVYLKFW-ASWCSICLASLPDTDEIAKEAG-DDYVVLTVVSPGHKGEQSEADFK 75 (138)
T ss_dssp CCCCCEE---EBTTSCEEEGGGGTTSEEEEEEC-CTTCHHHHHHHHHHHHHHHTCT-TTEEEEEEECTTSTTCCCHHHHH
T ss_pred CCCccee---ECCCCCEEEHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhC-CCcEEEEEEcCCCCchhhHHHHH
Confidence 5899999 55699999999999999999999 9999999999999999999854 479999993 33444445
Q ss_pred HHHHHhhccccccccCCCCCc-ceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy15453 132 AWINSLKKDNSLKKDNRLDKL-KIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLR 210 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~ 210 (247)
+|.+. + +. +|+++.|.+..+.+.|++. .+|+++|||++|+|++.+.|..+ .+++.+
T Consensus 76 ~~~~~----------~---~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~----~~~l~~ 132 (138)
T 4evm_A 76 NWYKG----------L---DYKNLPVLVDPSGKLLETYGVR------SYPTQAFIDKEGKLVKTHPGFME----KDAILQ 132 (138)
T ss_dssp HHHTT----------C---CCTTCCEEECTTCHHHHHTTCC------SSSEEEEECTTCCEEEEEESCCC----HHHHHH
T ss_pred HHHhh----------c---CCCCeeEEECcchHHHHHcCcc------cCCeEEEECCCCcEEEeecCCCc----HHHHHH
Confidence 55442 2 44 8999999999999999998 89999999999999999866543 577777
Q ss_pred HHHhh
Q psy15453 211 LVRAF 215 (247)
Q Consensus 211 ~l~~l 215 (247)
.|+.+
T Consensus 133 ~l~~l 137 (138)
T 4evm_A 133 TLKEL 137 (138)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 77765
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=172.84 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=102.6
Q ss_pred ccCCCCCCceeeeeecCC-ceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC-------
Q psy15453 54 VVMKPAPYWKGTAVVDGN-IKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD------- 125 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~-G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d------- 125 (247)
.....+|+|++ .|.+ |+.++|++|+||++||+|| ++|||+| .++|.|++++++|+++|++||+|+.|
T Consensus 12 ~~~~~~pdF~l---~d~~~G~~v~Ls~~kGKvvll~F~-At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~ 86 (207)
T 2r37_A 12 GISGTIYEYGA---LTIDGEEYIPFKQYAGKYVLFVNV-ASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEP 86 (207)
T ss_dssp ---CCGGGCEE---EBTTSSCEEEGGGGTTSEEEEEEE-CSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCC
T ss_pred cccCccCCeEe---eeCCCCCEEcHHHhCCCEEEEEEe-CCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCC
Confidence 33567999999 5668 9999999999999999999 9999999 79999999999999889999999964
Q ss_pred -ChHhHHHHHHHhhccccccccCCCCCcceeEEecCC--chH-HHHhCCcccC---------------------CC-ccc
Q psy15453 126 -SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT--HEI-SRDYGVYLED---------------------KG-HSL 179 (247)
Q Consensus 126 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~--~~~-~~~~~~~~~~---------------------~g-~~~ 179 (247)
+.+++++|.+..+. -. . .+++||++.|.+ +.. ...|+..... .. .+.
T Consensus 87 ~~~~~i~~f~~~~~~---~~-~---~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~ 159 (207)
T 2r37_A 87 GENSEILPTLKYVRP---GG-G---FVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWN 159 (207)
T ss_dssp SCHHHHHHHHHHTSS---CT-T---CCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCST
T ss_pred CCHHHHHHHHHhcch---hh-c---cCccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCccccc
Confidence 34566677662100 00 1 167999997643 221 1222211000 00 134
Q ss_pred eeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 180 RGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 180 p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
|++||||++|+|++.+.+..+ .+++.+.|+.+.
T Consensus 160 ~ttflID~~G~i~~~~~g~~~----~~~l~~~I~~ll 192 (207)
T 2r37_A 160 FEKFLVGPDGIPIMRWHHRTT----VSNVKMDILSYM 192 (207)
T ss_dssp TCEEEECTTSCEEEEECTTSC----HHHHHHHHHHHH
T ss_pred ceEEEECCCCcEEEEECCCCC----HHHHHHHHHHHH
Confidence 799999999999999865443 355656665554
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-23 Score=156.32 Aligned_cols=132 Identities=16% Similarity=0.187 Sum_probs=112.8
Q ss_pred CCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC-hHhHHHHHH
Q psy15453 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS-HFTHRAWIN 135 (247)
Q Consensus 57 ~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~-~~~~~~~~~ 135 (247)
.++|+|++ .|.+|+.+++++++||+++|.|| ++||++|+.+++.|++++++++ ++.+++|+.|. .+..++|.+
T Consensus 2 ~~~p~~~l---~~~~g~~~~l~~~~~k~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~ 75 (136)
T 1lu4_A 2 DERLQFTA---TTLSGAPFDGASLQGKPAVLWFW-TPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFVS 75 (136)
T ss_dssp GGGGCCEE---EBTTSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHH
T ss_pred CCCCCeEe---ecCCCCeecHHHhCCCEEEEEEE-CCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCCCHHHHHHHHH
Confidence 35899998 55699999999999999999999 9999999999999999999997 89999999977 667777777
Q ss_pred HhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 136 SLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
.+ +.+|+++.|.+..+.+.|++. .+|+++++|++|+|+ .+... ....+.+++.+.|+.+
T Consensus 76 ~~-------------~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~i~-~~~~~-~g~~~~~~l~~~l~~l 134 (136)
T 1lu4_A 76 KY-------------NLNFTNLNDADGVIWARYNVP------WQPAFVFYRADGTST-FVNNP-TAAMSQDELSGRVAAL 134 (136)
T ss_dssp HH-------------TCCSEEEECTTSHHHHHTTCC------SSSEEEEECTTSCEE-EECCS-SSCCCHHHHHHHHHHC
T ss_pred Hc-------------CCCceEEECCchhHHHhcCCC------CCCEEEEECCCCcEE-EEEcC-CCccCHHHHHHHHHHH
Confidence 54 579999999999999999998 899999999999999 76511 1122467888888765
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-23 Score=155.50 Aligned_cols=132 Identities=16% Similarity=0.227 Sum_probs=113.0
Q ss_pred cCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC-hHhHHHH
Q psy15453 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS-HFTHRAW 133 (247)
Q Consensus 55 ~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~-~~~~~~~ 133 (247)
+|.++|+|++ .+.+|+.+++++++||+++|.|| ++||++|+.+++.|++++++++ ++.+++|+.|. .+..++|
T Consensus 1 ~~~~~p~~~~---~~~~g~~~~l~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~ 74 (136)
T 1zzo_A 1 TVPAQLQFSA---KTLDGHDFHGESLLGKPAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEF 74 (136)
T ss_dssp CCCGGGCCEE---EBTTSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHH
T ss_pred CCCCCCCccc---ccCCCCEeeHHHhCCCeEEEEEE-cCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHH
Confidence 3678999999 55599999999999999999999 9999999999999999999987 89999999875 5566776
Q ss_pred HHHhhccccccccCCCCCc-ceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 134 INSLKKDNSLKKDNRLDKL-KIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
.+.. +. +|+++.|.+..+.+.|++. .+|++++||++|+|+ .+.|..+ .+++.+.|
T Consensus 75 ~~~~-------------~~~~~~~~~d~~~~~~~~~~i~------~~P~~~~id~~g~i~-~~~g~~~----~~~l~~~l 130 (136)
T 1zzo_A 75 VNKY-------------PVKTFTQLADTDGSVWANFGVT------QQPAYAFVDPHGNVD-VVRGRMS----QDELTRRV 130 (136)
T ss_dssp HHHT-------------TCTTSEEEECTTCHHHHHTTCC------SSSEEEEECTTCCEE-EEESCCC----HHHHHHHH
T ss_pred HHHc-------------CCCceEEEEcCCcHHHHHcCCC------CCceEEEECCCCCEE-EEecCCC----HHHHHHHH
Confidence 6643 45 8999999999999999998 899999999999999 6656533 57777777
Q ss_pred Hhhh
Q psy15453 213 RAFQ 216 (247)
Q Consensus 213 ~~l~ 216 (247)
+.+.
T Consensus 131 ~~~l 134 (136)
T 1zzo_A 131 TALT 134 (136)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 7653
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.2e-23 Score=161.68 Aligned_cols=136 Identities=23% Similarity=0.332 Sum_probs=109.8
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC-ChH
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD-SHF 128 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d-~~~ 128 (247)
..+.+|+++|+|+++++ +.+|+.++++++ +||++||+|| ++|||+|+.++|.|++++++ ++.+++|+.| +.+
T Consensus 20 ~~~~~G~~~P~f~l~~~-~~~g~~~~~~~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~vv~v~~~~~~~ 93 (168)
T 2b1k_A 20 ESALIGKPVPKFRLESL-DNPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQ 93 (168)
T ss_dssp CCTTTTSBCCCCEEEES-SSTTCEEEGGGGCCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCCEEEEEESCCHH
T ss_pred cccccCCcCCCeEeecc-cCCCcEeehhHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHC----CCEEEEEECCCChH
Confidence 45789999999999442 228999999985 8999999999 99999999999999988765 7999999965 456
Q ss_pred hHHHHHHHhhccccccccCCCCCccee-EEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHH
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIP-LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEE 207 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~ 207 (247)
...+|.+.+ +.+|+ ++.|.+..+.+.|++. .+|++||||++|+|++.+.|..+ .++
T Consensus 94 ~~~~~~~~~-------------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~----~~~ 150 (168)
T 2b1k_A 94 KAISWLKEL-------------GNPYALSLFDGDGMLGLDLGVY------GAPETFLIDGNGIIRYRHAGDLN----PRV 150 (168)
T ss_dssp HHHHHHHHH-------------CCCCSEEEEETTCHHHHHHTCC------SSSEEEEECTTSBEEEEEESCCC----HHH
T ss_pred HHHHHHHHc-------------CCCCceeeECcchHHHHHcCcc------ccCEEEEECCCCeEEEEEeCCCC----HHH
Confidence 667777654 46776 5688899999999999 89999999999999998877544 344
Q ss_pred HHHHHHhh
Q psy15453 208 TLRLVRAF 215 (247)
Q Consensus 208 il~~l~~l 215 (247)
+.+.|+.+
T Consensus 151 l~~~l~~~ 158 (168)
T 2b1k_A 151 WEEEIKPL 158 (168)
T ss_dssp HHHTTHHH
T ss_pred HHHHHHHH
Confidence 44444433
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=157.60 Aligned_cols=134 Identities=16% Similarity=0.252 Sum_probs=107.9
Q ss_pred ccccCCCCCCceeeeeecCCc--------eeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEe
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNI--------KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVS 123 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G--------~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs 123 (247)
.+.+|+++|+|++++ .+| +.+++++++||++||.|| ++||++|+.++|.|++++++ .++.+++|+
T Consensus 7 ~~~~g~~~p~f~l~~---~~g~~~~~~~~~~~~l~~~~gk~~ll~f~-~~~C~~C~~~~~~l~~l~~~---~~v~~v~v~ 79 (156)
T 1kng_A 7 SALIGRPAPQTALPP---LEGLQADNVQVPGLDPAAFKGKVSLVNVW-ASWCVPCHDEAPLLTELGKD---KRFQLVGIN 79 (156)
T ss_dssp -----CBCCCCCBCC---CTTCEETTEECCCBCGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHTTC---TTSEEEEEE
T ss_pred hHHhCCCCCCceeee---ccCcccccccCceechHHhCCCEEEEEEE-cccCHhHHHHHHHHHHHHhc---CCeEEEEEE
Confidence 578899999999954 477 999999999999999999 99999999999999999876 369999999
Q ss_pred CC-ChHhHHHHHHHhhccccccccCCCCCccee-EEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCC
Q psy15453 124 VD-SHFTHRAWINSLKKDNSLKKDNRLDKLKIP-LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPV 201 (247)
Q Consensus 124 ~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~ 201 (247)
.| +.+...+|.+.+ +++|+ ++.|.+..+.+.|++. .+|++|+||++|+|++.+.|..+
T Consensus 80 ~~~~~~~~~~~~~~~-------------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~~id~~G~i~~~~~g~~~- 139 (156)
T 1kng_A 80 YKDAADNARRFLGRY-------------GNPFGRVGVDANGRASIEWGVY------GVPETFVVGREGTIVYKLVGPIT- 139 (156)
T ss_dssp ESCCHHHHHHHHHHH-------------CCCCSEEEEETTSHHHHHTTCC------SSCEEEEECTTSBEEEEEESCCC-
T ss_pred CCCCHHHHHHHHHHc-------------CCCCceeeeCchhHHHHhcCcC------ccCeEEEEcCCCCEEEEEeCCCC-
Confidence 75 456667777754 56888 7889999999999998 89999999999999998866543
Q ss_pred CCCHHHHHHHHHhh
Q psy15453 202 GRSVEETLRLVRAF 215 (247)
Q Consensus 202 ~~~~~~il~~l~~l 215 (247)
.+++.+.|+.+
T Consensus 140 ---~~~l~~~l~~~ 150 (156)
T 1kng_A 140 ---PDNLRSVLLPQ 150 (156)
T ss_dssp ---HHHHHHTHHHH
T ss_pred ---HHHHHHHHHHH
Confidence 34555555443
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.3e-23 Score=157.55 Aligned_cols=119 Identities=23% Similarity=0.252 Sum_probs=98.7
Q ss_pred ccCCCCCC-ceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh-cCcEEEEEeCCC-hHhH
Q psy15453 54 VVMKPAPY-WKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK-IGAEVVGVSVDS-HFTH 130 (247)
Q Consensus 54 ~~G~~~P~-f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~-~~~~vl~Vs~d~-~~~~ 130 (247)
..|+.+|+ |++ .|.+| .+++++++||++||+|| ++||++|+.++|.|++++++|++ .+++|++|+.|. .+..
T Consensus 3 ~~~~~~P~~f~l---~~~~g-~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~ 77 (146)
T 1o8x_A 3 GLDKYLPGIEKL---RRGDG-EVEVKSLAGKLVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGF 77 (146)
T ss_dssp CGGGTSTTCCEE---EETTE-EEEGGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHH
T ss_pred chHhhCCCceEE---EcCCC-CCcHHHhCCCEEEEEEE-ccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHH
Confidence 45789999 999 55599 99999999999999999 99999999999999999999983 689999999985 3444
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEe-cCCchHHHHhCCcccCCCccceeEEEEc-CCCcEEEEE
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLS-DLTHEISRDYGVYLEDKGHSLRGLFIID-REGIVRQIT 195 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-D~~~~~~~~~~~~~~~~g~~~p~~~lId-~~G~v~~~~ 195 (247)
+++.+ .++ ..+++++. |.+..+.+.|++. .+|+++||| ++|+|++.+
T Consensus 78 ~~~~~----------~~~--~~~~~~~~~d~~~~~~~~~~v~------~~Pt~~lid~~~G~i~~~~ 126 (146)
T 1o8x_A 78 AGYFA----------KMP--WLAVPFAQSEAVQKLSKHFNVE------SIPTLIGVDADSGDVVTTR 126 (146)
T ss_dssp HHHHT----------TCS--SEECCGGGHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESC
T ss_pred HHHHH----------HCC--ceeeccchhhHHHHHHHHhCCC------CCCEEEEEECCCCeEEEec
Confidence 55544 222 23555554 5567899999998 899999999 999999764
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-22 Score=156.78 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=99.5
Q ss_pred cCCCCCC-ceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh-cCcEEEEEeCCC-hHhHH
Q psy15453 55 VMKPAPY-WKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK-IGAEVVGVSVDS-HFTHR 131 (247)
Q Consensus 55 ~G~~~P~-f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~-~~~~vl~Vs~d~-~~~~~ 131 (247)
+|+.+|+ |++ .+.+|+.+++++++||++||+|| ++||++|+.++|.|++++++|++ .++++++|+.|. .+..+
T Consensus 3 ~~~~~P~~f~l---~~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~ 78 (144)
T 1i5g_A 3 LKKFFPYSTNV---LKGAAADIALPSLAGKTVFFYFS-ASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFK 78 (144)
T ss_dssp TTTSCSSCSEE---EETTEEEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHH
T ss_pred hhhhCCCceEE---EcCCCCEecHHHcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHH
Confidence 5788999 999 45599999999999999999999 99999999999999999999984 689999999985 44555
Q ss_pred HHHHHhhccccccccCCCCCcceeEEe-cCCchHHHHhCCcccCCCccceeEEEEc-CCCcEEEEE
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLS-DLTHEISRDYGVYLEDKGHSLRGLFIID-REGIVRQIT 195 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-D~~~~~~~~~~~~~~~~g~~~p~~~lId-~~G~v~~~~ 195 (247)
+|.+. ++ ..+++++. |....+.+.|++. .+|+++||| ++|+|++.+
T Consensus 79 ~~~~~----------~~--~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~~G~i~~~~ 126 (144)
T 1i5g_A 79 DYYAK----------MP--WLALPFEDRKGMEFLTTGFDVK------SIPTLVGVEADSGNIITTQ 126 (144)
T ss_dssp HHHTT----------CS--SEECCTTCHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESC
T ss_pred HHHHh----------CC--ccccccCchHHHHHHHHHcCCC------CCCEEEEEECCCCcEEecc
Confidence 55542 22 13555554 5567899999998 899999999 999999764
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-22 Score=159.81 Aligned_cols=136 Identities=14% Similarity=0.216 Sum_probs=110.5
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC------
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS------ 126 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~------ 126 (247)
..+|+.+| ++ .|.+|+.+++++++||++||+|| ++||++|+.++|.|++++++|+..+++||+|+.|.
T Consensus 14 ~~~~~~~p--~l---~~~~g~~~~~~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~ 87 (164)
T 2h30_A 14 ATVPHTMS--TM---KTADNRPASVYLKKDKPTLIKFW-ASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKK 87 (164)
T ss_dssp CCHHHHHT--TC---EETTSSBGGGGCCTTSCEEEEEC-CTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCC
T ss_pred cccCCcCC--cc---CCCCCCEeeHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccC
Confidence 34556666 55 45699999999999999999999 99999999999999999999988899999999753
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcc-eeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCH
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLK-IPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSV 205 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~ 205 (247)
.+...+|.+ .. +++ +++..|.+..+.+.|++. .+|++||||++|+|++.+.|.. +.
T Consensus 88 ~~~~~~~~~----------~~---~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~ 144 (164)
T 2h30_A 88 DGEFQKWYA----------GL---NYPKLPVVTDNGGTIAQNLNIS------VYPSWALIGKDGDVQRIVKGSI----NE 144 (164)
T ss_dssp TTHHHHHHT----------TS---CCTTSCEEECTTCHHHHHTTCC------SSSEEEEECTTSCEEEEEESCC----CH
T ss_pred HHHHHHHHH----------hC---CCCcceEEEcCchHHHHHcCCC------ccceEEEECCCCcEEEEEcCCC----CH
Confidence 233333333 11 345 889999999999999998 8999999999999999886644 36
Q ss_pred HHHHHHHHhhhc
Q psy15453 206 EETLRLVRAFQY 217 (247)
Q Consensus 206 ~~il~~l~~l~~ 217 (247)
+++.+.|+.+..
T Consensus 145 ~~l~~~i~~~~~ 156 (164)
T 2h30_A 145 AQALALIRNPNA 156 (164)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHHHHHHH
Confidence 778888877653
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-22 Score=154.61 Aligned_cols=119 Identities=21% Similarity=0.256 Sum_probs=97.5
Q ss_pred ccCCCCCCc-eeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHH-hcCcEEEEEeCCCh-HhH
Q psy15453 54 VVMKPAPYW-KGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH-KIGAEVVGVSVDSH-FTH 130 (247)
Q Consensus 54 ~~G~~~P~f-~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~-~~~~~vl~Vs~d~~-~~~ 130 (247)
.+|+.+|+| ++ .|.+| .+++++++||++||+|| ++||++|+.++|.|++++++|+ +.++++++|+.|.. +..
T Consensus 3 ~~g~~~p~~~~l---~~~~g-~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~ 77 (144)
T 1o73_A 3 GLAKYLPGATNL---LSKSG-EVSLGSLVGKTVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDF 77 (144)
T ss_dssp GGGGTSCTTCCB---BCTTS-CBCSGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHH
T ss_pred chhhhCccceEe---ecCCC-cCcHHHhCCCEEEEEEE-CcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHH
Confidence 568999998 98 56699 99999999999999999 9999999999999999999998 46899999999863 344
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEe-cCCchHHHHhCCcccCCCccceeEEEEc-CCCcEEEEE
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLS-DLTHEISRDYGVYLEDKGHSLRGLFIID-REGIVRQIT 195 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-D~~~~~~~~~~~~~~~~g~~~p~~~lId-~~G~v~~~~ 195 (247)
+++.+ .++ ...+++.. |....+.+.|++. .+|+++||| ++|+|++.+
T Consensus 78 ~~~~~----------~~~--~~~~~~~~~~~~~~~~~~~~v~------~~Pt~~lid~~~G~i~~~~ 126 (144)
T 1o73_A 78 HDYYG----------KMP--WLALPFDQRSTVSELGKTFGVE------SIPTLITINADTGAIIGTQ 126 (144)
T ss_dssp HHHHT----------TCS--SEECCTTCHHHHHHHHHHHTCC------SSSEEEEEETTTCCEEESC
T ss_pred HHHHH----------hCC--ceEeeccchhHHHHHHHHcCCC------CCCEEEEEECCCCeEEecc
Confidence 44443 222 13444443 4457899999998 899999999 899999764
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-22 Score=160.11 Aligned_cols=121 Identities=19% Similarity=0.187 Sum_probs=98.8
Q ss_pred ccccCCCCCCc-eeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh-cCcEEEEEeCCCh-H
Q psy15453 52 NAVVMKPAPYW-KGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK-IGAEVVGVSVDSH-F 128 (247)
Q Consensus 52 ~~~~G~~~P~f-~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~-~~~~vl~Vs~d~~-~ 128 (247)
...+|+++|+| ++ .+.+| .+++++++||++||+|| ++||++|+.++|.|++++++|++ .+++||+|+.|.. +
T Consensus 21 ~~~vG~~~P~f~~l---~~~~g-~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~ 95 (165)
T 3s9f_A 21 MSGVAKHLGEALKL---RKQAD-TADMDSLSGKTVFFYFS-ASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEED 95 (165)
T ss_dssp -CHHHHHHHHTSCE---EETTE-EECSGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHH
T ss_pred hhhhcccCCcceee---ecCCC-cccHHHcCCCEEEEEEE-CCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHH
Confidence 45789999999 88 55699 99999999999999999 99999999999999999999985 6899999999874 3
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEecCC-chHHHHhCCcccCCCccceeEEEEcCC-CcEEEEE
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT-HEISRDYGVYLEDKGHSLRGLFIIDRE-GIVRQIT 195 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-~~~~~~~~~~~~~~g~~~p~~~lId~~-G~v~~~~ 195 (247)
..+++.+ ..+ ...+++..+.. ..+.+.|++. .+|++||||++ |+|++..
T Consensus 96 ~~~~~~~----------~~~--~~~~~~~~~~~~~~l~~~~~v~------~~Pt~~lid~~~G~iv~~~ 146 (165)
T 3s9f_A 96 DFNAYYA----------KMP--WLSIPFANRNIVEALTKKYSVE------SIPTLIGLNADTGDTVTTR 146 (165)
T ss_dssp HHHHHHT----------TCS--SEECCTTCHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESC
T ss_pred HHHHHHH----------hCC--CcccccCchhHHHHHHHHcCCC------CCCEEEEEeCCCCEEEecc
Confidence 4444444 222 13444444333 7899999998 89999999998 9999864
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.4e-23 Score=156.29 Aligned_cols=119 Identities=19% Similarity=0.269 Sum_probs=97.2
Q ss_pred CCCCCceeeeeecCCceeEEcCC-CCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh--cCcEEEEEeCCC-hHhHH
Q psy15453 57 KPAPYWKGTAVVDGNIKEIKLTD-YRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEFHK--IGAEVVGVSVDS-HFTHR 131 (247)
Q Consensus 57 ~~~P~f~l~~~~d~~G~~v~l~~-~~gk-~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~--~~~~vl~Vs~d~-~~~~~ 131 (247)
+.+|+|+++ +.+|+.+++++ ++|| ++||+|| ++|||+|+.++|.|++++++|++ .++.+++|+.|. .+...
T Consensus 2 ~~~p~~~l~---~~~g~~~~l~~~~~gk~~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~ 77 (143)
T 2lus_A 2 EFIQGIKLV---KKNRCEVNANEALKDKDIIGFYFS-AHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMF 77 (143)
Confidence 468999994 55999999999 9999 9999999 99999999999999999999953 489999999885 34445
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
+|.+ .+++....+++..|....+.+.|++. .+|+++|||++|+|++.+
T Consensus 78 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~ 125 (143)
T 2lus_A 78 QYMM----------ESHGDWLAIPYRSGPASNVTAKYGIT------GIPALVIVKKDGTLISMN 125 (143)
Confidence 5544 33332233455566668899999998 899999999999999886
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-15 Score=113.26 Aligned_cols=114 Identities=11% Similarity=0.061 Sum_probs=88.0
Q ss_pred CCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHh
Q psy15453 58 PAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSL 137 (247)
Q Consensus 58 ~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~ 137 (247)
.+++++..++ +|........+||+++|.|| ++||++|+.+.|.+.+++++++ .++.++.|+.|.
T Consensus 5 ~~~~l~~~~~---~~~~~~~~~~~~k~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~v~~~~----------- 68 (126)
T 2l57_A 5 GIKQINFQSI---NVVENLEEAKEGIPTIIMFK-TDTCPYCVEMQKELSYVSKERE-GKFNIYYARLEE----------- 68 (126)
T ss_dssp CSSCTTTTCC---SEESSTTTCCSSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHSS-SSCEEEEEETTS-----------
T ss_pred ccCCCCcccc---chhHHHHHHhCCCcEEEEEE-CCCCccHHHHHHHHHHHHHHhc-CCeEEEEEeCCC-----------
Confidence 4556665333 55555455567999999999 9999999999999999999986 579999999541
Q ss_pred hccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 138 KKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
|.+..+.+.|++. .+|+++++|++|++++.+.|..+ .+++.+.|+.+..
T Consensus 69 ---------------------d~~~~~~~~~~v~------~~Pt~~~~~~~G~~~~~~~G~~~----~~~l~~~l~~~~~ 117 (126)
T 2l57_A 69 ---------------------EKNIDLAYKYDAN------IVPTTVFLDKEGNKFYVHQGLMR----KNNIETILNSLGV 117 (126)
T ss_dssp ---------------------SHHHHHHHHTTCC------SSSEEEEECTTCCEEEEEESCCC----HHHHHHHHHHHCC
T ss_pred ---------------------CchHHHHHHcCCc------ceeEEEEECCCCCEEEEecCCCC----HHHHHHHHHHHhc
Confidence 1124677889998 89999999999999988766433 5778888877654
Q ss_pred c
Q psy15453 218 T 218 (247)
Q Consensus 218 ~ 218 (247)
.
T Consensus 118 ~ 118 (126)
T 2l57_A 118 K 118 (126)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-16 Score=119.99 Aligned_cols=120 Identities=12% Similarity=0.119 Sum_probs=89.5
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
+..|..+|+|+. +.+.++....+++.+||++||+|| ++||++|+...+.+ .+++++++ ++.++.|+.+...
T Consensus 4 ~~~~~~~~~f~~--~~~~~~~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~~~~~~~l~~~~~--~~~~~~vd~~~~~- 77 (134)
T 2fwh_A 4 TAQTQTHLNFTQ--IKTVDELNQALVEAKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTAND- 77 (134)
T ss_dssp ------CCCCEE--CCSHHHHHHHHHHHTTSCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTCC-
T ss_pred ccccccCCCcEE--ecCHHHHHHHHHHhcCCcEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhc--CcEEEEEeCCCCc-
Confidence 456788999983 244466677788888999999999 99999999999998 88888886 6999999886521
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEE--EEEecCCCCCCCHHH
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVR--QITLNDLPVGRSVEE 207 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~--~~~~~~~~~~~~~~~ 207 (247)
|....+.+.|++. .+|+++++|++|+++ +.+.|.. +.++
T Consensus 78 -----------------------------~~~~~l~~~~~v~------~~Pt~~~~d~~G~~v~~~~~~G~~----~~~~ 118 (134)
T 2fwh_A 78 -----------------------------AQDVALLKHLNVL------GLPTILFFDGQGQEHPQARVTGFM----DAET 118 (134)
T ss_dssp -----------------------------HHHHHHHHHTTCC------SSSEEEEECTTSCBCGGGCBCSCC----CHHH
T ss_pred -----------------------------chHHHHHHHcCCC------CCCEEEEECCCCCEeeeeeeeecc----CHHH
Confidence 1235678889998 899999999999997 4554443 3678
Q ss_pred HHHHHHhhhc
Q psy15453 208 TLRLVRAFQY 217 (247)
Q Consensus 208 il~~l~~l~~ 217 (247)
+.+.|+.++.
T Consensus 119 l~~~l~~~~~ 128 (134)
T 2fwh_A 119 FSAHLRDRQP 128 (134)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHhcCc
Confidence 8888888764
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-15 Score=118.75 Aligned_cols=125 Identities=14% Similarity=0.112 Sum_probs=94.5
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
...+...++| . ..|+.+++++.+||+++|+||.++||++|+.++|.+ .++.+.+. .++.++.|+.+...
T Consensus 24 ~~~~~~~~~~--~----~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~-~~~~~v~vd~~~~~- 95 (154)
T 2ju5_A 24 RPIAAANLQW--E----SYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG-VHLHMVEVDFPQKN- 95 (154)
T ss_dssp CSSCCCCCCE--E----CHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH-HHCEEEEEECCSSC-
T ss_pred hhcccCCCCC--C----CHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc-CcEEEEEecCcccc-
Confidence 3455555666 1 146788888888999999999679999999999999 77765553 37899999877522
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
+++++ +.|.+..+.+.|++. .+|+++++|++|++++.. |.. ..+.++++
T Consensus 96 ---------------------~~~~~-~~~~~~~l~~~~~v~------~~Pt~~~~d~~G~~~~~~-G~~--~~~~~~l~ 144 (154)
T 2ju5_A 96 ---------------------HQPEE-QRQKNQELKAQYKVT------GFPELVFIDAEGKQLARM-GFE--PGGGAAYV 144 (154)
T ss_dssp ---------------------CCCHH-HHHHHHHHHHHTTCC------SSSEEEEECTTCCEEEEE-CCC--TTCHHHHH
T ss_pred ---------------------CCChh-hHhhHHHHHHHcCCC------CCCEEEEEcCCCCEEEEe-cCC--CCCHHHHH
Confidence 12222 234557899999999 899999999999999987 655 33578888
Q ss_pred HHHHhhh
Q psy15453 210 RLVRAFQ 216 (247)
Q Consensus 210 ~~l~~l~ 216 (247)
+.|+.+.
T Consensus 145 ~~l~~~l 151 (154)
T 2ju5_A 145 SKVKSAL 151 (154)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-14 Score=107.52 Aligned_cols=102 Identities=21% Similarity=0.296 Sum_probs=84.6
Q ss_pred ecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccC
Q psy15453 68 VDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDN 147 (247)
Q Consensus 68 ~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~ 147 (247)
.+.+|...++++++||++||.|| ++||++|+...|.+.+++++|++ ++.++.|+.|.
T Consensus 37 ~~~~~~~~~l~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~--------------------- 93 (141)
T 3hxs_A 37 ADYENHSKEWKYLGDKPAIVDFY-ADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDK--------------------- 93 (141)
T ss_dssp CCCSSCCCCCCCCCSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEETTT---------------------
T ss_pred hccccchhHHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEECCC---------------------
Confidence 45578889999999999999999 99999999999999999999875 58888887763
Q ss_pred CCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 148 RLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 148 ~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+..+.+.|++. .+|+++++|++|+++ .+.|.. +.+++.+.|+.+.
T Consensus 94 -------------~~~~~~~~~v~------~~Pt~~~~~~~g~~~-~~~G~~----~~~~l~~~l~~~l 138 (141)
T 3hxs_A 94 -------------EPELARDFGIQ------SIPTIWFVPMKGEPQ-VNMGAL----SKEQLKGYIDKVL 138 (141)
T ss_dssp -------------CHHHHHHTTCC------SSSEEEEECSSSCCE-EEESCC----CHHHHHHHHHHTT
T ss_pred -------------CHHHHHHcCCC------CcCEEEEEeCCCCEE-EEeCCC----CHHHHHHHHHHHH
Confidence 24678889998 899999999999987 444543 3677778777654
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.7e-14 Score=104.51 Aligned_cols=110 Identities=14% Similarity=0.305 Sum_probs=82.2
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~ 132 (247)
.....++|+++. .+++.++....+||+++|.|| ++||++|+.+.|.+.++++++++ ++.++.|+.|.
T Consensus 18 ~~~~~~~~~~~~-----~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~------ 84 (128)
T 3ul3_B 18 LRMFKKVPRLQQ-----NGSNIINGVNMKNTVIVLYFF-AKWCQACTMQSTEMDKLQKYYGK-RIYLLKVDLDK------ 84 (128)
T ss_dssp --------CCCC-----CCCSSSSBTTSCCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGG-GEEEEEEEGGG------
T ss_pred HHHhccCCcccc-----CCccHHHHHHccCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCC------
Confidence 344566888773 245667777788999999999 99999999999999999999974 68888887653
Q ss_pred HHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 133 WINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|
T Consensus 85 ----------------------------~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l 125 (128)
T 3ul3_B 85 ----------------------------NESLARKFSVK------SLPTIILL-KNKTMLARKDHFV----SSNDLIALI 125 (128)
T ss_dssp ----------------------------CHHHHHHTTCC------SSSEEEEE-ETTEEEEEESSCC----CHHHHHHHH
T ss_pred ----------------------------CHHHHHHcCCC------CcCEEEEE-ECCEEEEEecCCC----CHHHHHHHH
Confidence 23678889998 89999999 6899998875543 356777666
Q ss_pred Hh
Q psy15453 213 RA 214 (247)
Q Consensus 213 ~~ 214 (247)
+.
T Consensus 126 ~~ 127 (128)
T 3ul3_B 126 KK 127 (128)
T ss_dssp TT
T ss_pred Hh
Confidence 53
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-13 Score=101.95 Aligned_cols=98 Identities=19% Similarity=0.225 Sum_probs=78.1
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHH--HHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 80 YRGKYLVFFFYPLDFTFVCPTEVLALN--EKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 80 ~~gk~vvl~F~~a~~Cp~C~~~~~~l~--~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
..||+++|.|| ++||++|+.+.|.|. ++.+++++ ++.++.|+.+..
T Consensus 27 ~~~k~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~~~~-~~~~~~vd~~~~------------------------------ 74 (133)
T 3fk8_A 27 RTHKPTLLVFG-ANWCTDCRALDKSLRNQKNTALIAK-HFEVVKIDVGNF------------------------------ 74 (133)
T ss_dssp HHTCCEEEEEE-CTTCHHHHHHHHHHTSHHHHHHHHH-HCEEEEEECTTT------------------------------
T ss_pred hcCCcEEEEEc-CCCCHHHHHHHHHhCCHHHHHHhcC-CEEEEEEeCCcc------------------------------
Confidence 45899999999 999999999999999 99999865 699999988530
Q ss_pred ecCCchHHHHhCC---cccCCCccceeEEEEcCCCcEEEEEecCC-CC--CCCHHHHHHHHHhhh
Q psy15453 158 SDLTHEISRDYGV---YLEDKGHSLRGLFIIDREGIVRQITLNDL-PV--GRSVEETLRLVRAFQ 216 (247)
Q Consensus 158 ~D~~~~~~~~~~~---~~~~~g~~~p~~~lId~~G~v~~~~~~~~-~~--~~~~~~il~~l~~l~ 216 (247)
|....+.+.|++ . .+|+++++|++|++++.+.|.. .. ....+++.+.|+.+.
T Consensus 75 -~~~~~l~~~~~v~~~~------~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~ 132 (133)
T 3fk8_A 75 -DRNLELSQAYGDPIQD------GIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT 132 (133)
T ss_dssp -TSSHHHHHHTTCGGGG------CSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred -cchHHHHHHhCCccCC------ccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence 234578888988 7 8999999999999999886622 11 234677777777653
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-14 Score=113.21 Aligned_cols=124 Identities=11% Similarity=0.069 Sum_probs=78.7
Q ss_pred eeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCC
Q psy15453 73 KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRL 149 (247)
Q Consensus 73 ~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 149 (247)
+.+.++..+||+++|+|| |+||++|+.+.+.+ .++++.+++ ++.++.|+.|.......... +...+.
T Consensus 38 ~~~~~a~~~gk~vlv~F~-A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~--------~~~~~~ 107 (172)
T 3f9u_A 38 LGMEYARQHNKPVMLDFT-GYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDNKTPLTEPVK--------IMENGT 107 (172)
T ss_dssp HHHHHHHHTTCCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTCCCEEEEEEE--------EEETTE
T ss_pred HHHHHHHHcCCeEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCcccccchhhh--------hhhcch
Confidence 345556667999999999 99999999964444 555555554 79999999886331100000 000000
Q ss_pred CCcceeEEecCCchH-HHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 150 DKLKIPLLSDLTHEI-SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 150 ~~~~~~~l~D~~~~~-~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
...+..+.|....+ .+.|++. .+|+++++|++|+++..+.|..+ +.+++++.|+.+.
T Consensus 108 -~~~~~~~~~~~~~~~~~~~~v~------~~Pt~~lid~~G~~~~~~~G~~~---~~~~l~~~l~~~l 165 (172)
T 3f9u_A 108 -ERTLRTVGDKWSYLQRVKFGAN------AQPFYVLIDNEGNPLNKSYAYDE---DISKYINFLQTGL 165 (172)
T ss_dssp -EEEEEEHHHHHHHHHHHHHSCC------CSSEEEEECTTSCBSSCCBCSCC---CHHHHHHHHHHHH
T ss_pred -hhhhhhhhhhhhHHHHHHcCCC------CcceEEEECCCCCEEeeccCCCC---CHHHHHHHHHHHH
Confidence 11222222222233 5889999 89999999999999987755442 3677777776654
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-13 Score=101.97 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=79.0
Q ss_pred eeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCC
Q psy15453 73 KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRL 149 (247)
Q Consensus 73 ~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 149 (247)
+.+.+++.+||++||.|| ++||++|+.+.|.+ .++.+.++. ++.++.|+.+.
T Consensus 18 ~~~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------- 72 (130)
T 2kuc_A 18 EALKRAEVEDKLLFVDCF-TTWCGPCKRLSKVVFKDSLVADYFNR-HFVNLKMDMEK----------------------- 72 (130)
T ss_dssp HHHHHHHHHSSCEEEEEC-CTTCTHHHHHHHHGGGCHHHHHHHHH-HSEEEEECSSS-----------------------
T ss_pred HHHHHHHhcCCeEEEEEE-CCCCccHHHHHHHhcCcHHHHHHHhc-CeEEEEEecCC-----------------------
Confidence 345556567999999999 99999999999999 666655543 57777776653
Q ss_pred CCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhccc
Q psy15453 150 DKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTD 219 (247)
Q Consensus 150 ~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 219 (247)
+....+.+.|++. .+|+++++|++|++++.+.|.. +.+++.+.|+.+....
T Consensus 73 ---------~~~~~~~~~~~v~------~~Pt~~~~d~~G~~~~~~~G~~----~~~~l~~~l~~~~~~~ 123 (130)
T 2kuc_A 73 ---------GEGVELRKKYGVH------AYPTLLFINSSGEVVYRLVGAE----DAPELLKKVKLGVESE 123 (130)
T ss_dssp ---------TTHHHHHHHTTCC------SSCEEEEECTTSCEEEEEESCC----CHHHHHHHHHHHHSCC
T ss_pred ---------cchHHHHHHcCCC------CCCEEEEECCCCcEEEEecCCC----CHHHHHHHHHHHHHhc
Confidence 1235778889998 8999999999999998876654 3577888888775443
|
| >4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-12 Score=102.72 Aligned_cols=139 Identities=22% Similarity=0.316 Sum_probs=106.8
Q ss_pred cccccCCCCCC--ceeeeee----c------CCceeEEcCCC--CCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHH-Hh
Q psy15453 51 TNAVVMKPAPY--WKGTAVV----D------GNIKEIKLTDY--RGKYLVFFFYPLDFTFVCPT-EVLALNEKIDEF-HK 114 (247)
Q Consensus 51 ~~~~~G~~~P~--f~l~~~~----d------~~G~~v~l~~~--~gk~vvl~F~~a~~Cp~C~~-~~~~l~~l~~~~-~~ 114 (247)
....+|+++|. +++.=+- + +.-+++++++. +||.+||++.|+.+.|.|.. ++|.+.+.++++ +.
T Consensus 24 ~~~~v~~~~P~gdv~f~yip~~~~~~~~~~c~~P~~v~ls~~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~ 103 (199)
T 4h86_A 24 MSDLVNKKFPAGDYKFQYIAISQSDADSESCKMPQTVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKE 103 (199)
T ss_dssp BCTTTTSBCCCTTCEEEECCCCSSSTTSGGGTSCEEEEHHHHHHHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHH
T ss_pred hHHHhCCCCCCCCceEEEecCCccccccccCCCCeeeEHHHHhcCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHHh
Confidence 34668999995 4432210 1 12356888775 69999999999999999987 699999999876 67
Q ss_pred cCc-EEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCc---cceeEEEEcCCCc
Q psy15453 115 IGA-EVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGH---SLRGLFIIDREGI 190 (247)
Q Consensus 115 ~~~-~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~---~~p~~~lId~~G~ 190 (247)
+|+ +|++||+|++..+++|.+.... . ....+.++.|+++++.+.+|+.....+. .-+..+||| ||+
T Consensus 104 kGvd~I~ciSVND~FVm~AW~k~~~~------~---~~~~i~~laD~~~eftkalGl~~~~~~gg~RS~Rya~IVd-DGv 173 (199)
T 4h86_A 104 KEVDQVIVVTVDNPFANQAWAKSLGV------K---DTTHIKFASDPGCAFTKSIGFELAVGDGVYWSGRWAMVVE-NGI 173 (199)
T ss_dssp SCCCEEEEEESSCHHHHHHHHHHTTC------C---CCSSEEEEECGGGHHHHHTTCEEEEETTEEEECSEEEEEE-TTE
T ss_pred cCCcEEEEEEcCCHHHHHHHHHHhcc------c---ccccccccCCcchHHHHhcCceeecCCCcceeeEEEEEEE-CCE
Confidence 787 7999999999999999996422 1 1357999999999999999987554332 346789998 999
Q ss_pred EEEEEecCC
Q psy15453 191 VRQITLNDL 199 (247)
Q Consensus 191 v~~~~~~~~ 199 (247)
|.+.++.+.
T Consensus 174 V~~~~vE~~ 182 (199)
T 4h86_A 174 VTYAAKETN 182 (199)
T ss_dssp EEEEEECSS
T ss_pred EEEEEEeCC
Confidence 999987553
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=95.80 Aligned_cols=88 Identities=18% Similarity=0.280 Sum_probs=70.7
Q ss_pred CCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 78 TDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 78 ~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.+..+|++||.|| |+||++|+...|.+.++.++++ ++.++.|+.|.
T Consensus 16 ~~~~~k~vvv~F~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d~------------------------------- 61 (105)
T 3zzx_A 16 NEAGNKLVVIDFY-ATWCGPCKMIAPKLEELSQSMS--DVVFLKVDVDE------------------------------- 61 (105)
T ss_dssp HHTTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEEETTT-------------------------------
T ss_pred HhcCCCEEEEEEE-CCCCCCccCCCcchhhhhhccC--CeEEEEEeccc-------------------------------
Confidence 3345799999999 9999999999999999998875 67888777653
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
..++++.|++. .+|+++++ ++|+++..+.|. +.+++.+.|+.
T Consensus 62 ---~~~l~~~~~V~------~~PT~~~~-~~G~~v~~~~G~-----~~~~l~~~i~k 103 (105)
T 3zzx_A 62 ---CEDIAQDNQIA------CMPTFLFM-KNGQKLDSLSGA-----NYDKLLELVEK 103 (105)
T ss_dssp ---CHHHHHHTTCC------BSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHH
T ss_pred ---CHHHHHHcCCC------eecEEEEE-ECCEEEEEEeCc-----CHHHHHHHHHh
Confidence 24688899999 89987777 799999888662 45777777654
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.3e-12 Score=93.65 Aligned_cols=90 Identities=21% Similarity=0.284 Sum_probs=75.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.||+++|.|| ++||++|+...|.+.++++++++ ++.++.|+.|.
T Consensus 16 ~~~~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~---------------------------------- 59 (112)
T 2voc_A 16 SEGVVLADFW-APWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDE---------------------------------- 59 (112)
T ss_dssp SSSEEEEEEE-CTTBGGGGGHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------------
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEECCC----------------------------------
Confidence 6899999999 99999999999999999999975 69999998763
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+....
T Consensus 60 ~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~l~~~~~ 105 (112)
T 2voc_A 60 NQETAGKYGVM------SIPTLLVL-KDGEVVETSVGFKP----KEALQELVNKHLL 105 (112)
T ss_dssp CCSHHHHTTCC------SBSEEEEE-ETTEEEEEEESCCC----HHHHHHHHHTTSC
T ss_pred CHHHHHHcCCC------cccEEEEE-eCCEEEEEEeCCCC----HHHHHHHHHHHHH
Confidence 13578889998 89999999 89999988766543 5778888876653
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-12 Score=93.89 Aligned_cols=89 Identities=11% Similarity=0.140 Sum_probs=72.1
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 79 DYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 79 ~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
+.+||+++|.|| ++||++|+...|.+.+++++++ ++.++.|+.+.
T Consensus 21 ~~~~~~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-------------------------------- 65 (111)
T 2pu9_C 21 AAGDKPVVLDMF-TQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQ-------------------------------- 65 (111)
T ss_dssp TCTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS--------------------------------
T ss_pred hcCCCEEEEEEE-CCcCHhHHHHCHHHHHHHHHCC--CeEEEEEecCc--------------------------------
Confidence 346899999999 9999999999999999999886 68999988763
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
.+..+.+.|++. .+|+ ++++++|+++..+.|.. .+++.+.|+.+
T Consensus 66 -~~~~~~~~~~v~------~~Pt-~~~~~~G~~~~~~~G~~-----~~~l~~~l~~~ 109 (111)
T 2pu9_C 66 -ENKTLAKELGIR------VVPT-FKILKENSVVGEVTGAK-----YDKLLEAIQAA 109 (111)
T ss_dssp -TTHHHHHHHCCS------BSSE-EEEESSSSEEEEEESSC-----HHHHHHHHHHH
T ss_pred -chHHHHHHcCCC------eeeE-EEEEeCCcEEEEEcCCC-----HHHHHHHHHHh
Confidence 124678889998 8898 67779999998876541 46777777655
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-12 Score=99.76 Aligned_cols=113 Identities=10% Similarity=0.043 Sum_probs=87.5
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHH
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAW 133 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~ 133 (247)
..|.++|+..+..+ +++.+....-.+|+++|.|| ++||++|+...|.+++++++++. ++.++.|+.|.
T Consensus 30 ~~~~~~~~~~v~~l---~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~------- 97 (148)
T 3p2a_A 30 RCGHSLFDGEVINA---TAETLDKLLQDDLPMVIDFW-APWCGPCRSFAPIFAETAAERAG-KVRFVKVNTEA------- 97 (148)
T ss_dssp TTCCBTTCCCCEEC---CTTTHHHHTTCSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT-------
T ss_pred hcCCccccCCceec---CHHHHHHHHhcCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-ceEEEEEECcC-------
Confidence 44667777777544 55555544456899999999 99999999999999999999865 58898887763
Q ss_pred HHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVR 213 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~ 213 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+
T Consensus 98 ---------------------------~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~ 139 (148)
T 3p2a_A 98 ---------------------------EPALSTRFRIR------SIPTIMLY-RNGKMIDMLNGAV----PKAPFDNWLD 139 (148)
T ss_dssp ---------------------------CHHHHHHTTCC------SSSEEEEE-ETTEEEEEESSCC----CHHHHHHHHH
T ss_pred ---------------------------CHHHHHHCCCC------ccCEEEEE-ECCeEEEEEeCCC----CHHHHHHHHH
Confidence 23677889998 88998888 5899998875543 3677777777
Q ss_pred hhh
Q psy15453 214 AFQ 216 (247)
Q Consensus 214 ~l~ 216 (247)
.+.
T Consensus 140 ~~l 142 (148)
T 3p2a_A 140 EQL 142 (148)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-12 Score=95.46 Aligned_cols=89 Identities=11% Similarity=0.096 Sum_probs=72.4
Q ss_pred CCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 78 TDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 78 ~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.+.+||+++|.|| ++||++|+...|.+.+++++|+ ++.++.|+.|.
T Consensus 27 ~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~------------------------------- 72 (116)
T 3qfa_C 27 DAAGDKLVVVDFS-ATWCGPSKMIKPFFHSLSEKYS--NVIFLEVDVDD------------------------------- 72 (116)
T ss_dssp HHHTTSCEEEEEE-CTTCHHHHHHHHHHHHHHTTCT--TSEEEEEETTT-------------------------------
T ss_pred HhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCC-------------------------------
Confidence 3346899999999 9999999999999999999886 48999988763
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|. +.+++.+.|+.+
T Consensus 73 ---~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~ 115 (116)
T 3qfa_C 73 ---CQDVASECEVK------SMPTFQFF-KKGQKVGEFSGA-----NKEKLEATINEL 115 (116)
T ss_dssp ---THHHHHHTTCC------SSSEEEEE-SSSSEEEEEESC-----CHHHHHHHHHHH
T ss_pred ---CHHHHHHcCCc------cccEEEEE-eCCeEEEEEcCC-----CHHHHHHHHHHh
Confidence 24677889998 89998888 789998887554 357777777654
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.35 E-value=4.3e-13 Score=106.23 Aligned_cols=80 Identities=11% Similarity=0.009 Sum_probs=61.0
Q ss_pred EcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCccee
Q psy15453 76 KLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIP 155 (247)
Q Consensus 76 ~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (247)
.+++++||++||+|| |+|||+|+.++|.|.+++++++ ++.|+.|+.|... +....+ .
T Consensus 48 ~l~~~~~k~vvv~F~-A~WC~pC~~~~P~l~~l~~~~~--~v~~~~v~~d~~~---~~~~~~-------------~---- 104 (167)
T 1z6n_A 48 RLQRIERRYRLLVAG-EMWCPDCQINLAALDFAQRLQP--NIELAIISKGRAE---DDLRQR-------------L---- 104 (167)
T ss_dssp HHHTCCSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHHHH---HHTTTT-------------T----
T ss_pred HHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CcEEEEEECCCCH---HHHHHH-------------H----
Confidence 356778999999999 9999999999999999998875 6889888766311 111100 0
Q ss_pred EEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 156 LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 156 ~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
..++. .+|+++++|++|+++..+
T Consensus 105 -----------~~~v~------~iPt~i~~~~~G~~~~~~ 127 (167)
T 1z6n_A 105 -----------ALERI------AIPLVLVLDEEFNLLGRF 127 (167)
T ss_dssp -----------TCSSC------CSSEEEEECTTCCEEEEE
T ss_pred -----------HcCCC------CcCeEEEECCCCCEEEEE
Confidence 01355 889999999999998776
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.7e-12 Score=94.74 Aligned_cols=90 Identities=18% Similarity=0.310 Sum_probs=73.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+...|.+.++++++++ ++.++.|+.|.
T Consensus 37 ~~k~~lv~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~---------------------------------- 80 (136)
T 2l5l_A 37 GDKPAIVDFY-ADWCGPCKMVAPILDELAKEYDG-QIVIYKVDTEK---------------------------------- 80 (136)
T ss_dssp CSSCEEEEEE-CTTSHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------------
T ss_pred CCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcC-CEEEEEEeCCC----------------------------------
Confidence 3689999999 99999999999999999999874 58999888763
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
+..+.+.|++. .+|+++++|++|+++ .+.|.. +.+++.+.|+.+..
T Consensus 81 ~~~l~~~~~v~------~~Pt~~~~~~~G~~~-~~~G~~----~~~~l~~~l~~~~~ 126 (136)
T 2l5l_A 81 EQELAGAFGIR------SIPSILFIPMEGKPE-MAQGAM----PKASFKKAIDEFLL 126 (136)
T ss_dssp CHHHHHHTTCC------SSCEEEEECSSSCCE-EEESCC----CHHHHHHHHHHHHT
T ss_pred CHHHHHHcCCC------CCCEEEEECCCCcEE-EEeCCC----CHHHHHHHHHHHhh
Confidence 23677889998 899999999999987 444533 36778888877653
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.34 E-value=5.7e-12 Score=92.09 Aligned_cols=86 Identities=14% Similarity=0.227 Sum_probs=70.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+||+++|.|| ++||++|+...|.+.+++++++ ++.++.|+.|.
T Consensus 23 ~~k~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~--~~~~~~vd~~~---------------------------------- 65 (109)
T 3f3q_A 23 QDKLVVVDFY-ATWCGPCKMIAPMIEKFSEQYP--QADFYKLDVDE---------------------------------- 65 (109)
T ss_dssp SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------------
T ss_pred cCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCC----------------------------------
Confidence 5899999999 9999999999999999999986 58888887753
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|++++++ +|+++..+.|. ..+++.+.|+.+
T Consensus 66 ~~~l~~~~~v~------~~Pt~~~~~-~G~~~~~~~G~-----~~~~l~~~i~~~ 108 (109)
T 3f3q_A 66 LGDVAQKNEVS------AMPTLLLFK-NGKEVAKVVGA-----NPAAIKQAIAAN 108 (109)
T ss_dssp CHHHHHHTTCC------SSSEEEEEE-TTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred CHHHHHHcCCC------ccCEEEEEE-CCEEEEEEeCC-----CHHHHHHHHHhh
Confidence 24677889998 899999997 89998887665 236666666553
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=89.86 Aligned_cols=88 Identities=16% Similarity=0.244 Sum_probs=68.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+||+++|.|| ++||++|+...|.+.+++++++..++.++.|+.+.
T Consensus 20 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~---------------------------------- 64 (112)
T 3d6i_A 20 GDKLIVLYFH-TSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE---------------------------------- 64 (112)
T ss_dssp TTCCEEEEEE-CCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTT----------------------------------
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEeccc----------------------------------
Confidence 4899999999 99999999999999999998765579999998764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|.. .+++.+.|+.+
T Consensus 65 ~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~-----~~~l~~~l~~~ 107 (112)
T 3d6i_A 65 NSEISELFEIS------AVPYFIII-HKGTILKELSGAD-----PKEYVSLLEDC 107 (112)
T ss_dssp CHHHHHHTTCC------SSSEEEEE-ETTEEEEEECSCC-----HHHHHHHHHHH
T ss_pred CHHHHHHcCCC------cccEEEEE-ECCEEEEEecCCC-----HHHHHHHHHHH
Confidence 13677889998 89998888 6999998875542 34566666554
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-12 Score=100.19 Aligned_cols=97 Identities=16% Similarity=0.109 Sum_probs=72.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|++||+|| ++||++|+.++|.|.+++++|++ .+.++.|+.|.
T Consensus 22 ~~k~vlv~F~-a~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~---------------------------------- 65 (149)
T 3gix_A 22 AEKVLVLRFG-RDEDPVCLQLDDILSKTSSDLSK-MAAIYLVDVDQ---------------------------------- 65 (149)
T ss_dssp CSSEEEEEEE-CTTSHHHHHHHHHHHHHHTTTTT-TEEEEEEETTT----------------------------------
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCc----------------------------------
Confidence 4899999999 99999999999999999998864 38888887653
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC-----C-CCCHHHHHHHHHhhhcccc
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP-----V-GRSVEETLRLVRAFQYTDE 220 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~-----~-~~~~~~il~~l~~l~~~~~ 220 (247)
...+.+.|++. .+|+++ ++++|+++....+... . ..+.+++.+.|+.+-...+
T Consensus 66 ~~~l~~~~~v~------~~Pt~~-~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~~ 124 (149)
T 3gix_A 66 TAVYTQYFDIS------YIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAM 124 (149)
T ss_dssp CCHHHHHTTCC------SSSEEE-EEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHcCCC------ccCeEE-EEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHhh
Confidence 24678899998 899988 6678999833322111 0 2345777777777654433
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-11 Score=88.84 Aligned_cols=88 Identities=17% Similarity=0.309 Sum_probs=71.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+...|.+.++++++++ ++.++.|+.+.
T Consensus 19 ~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~---------------------------------- 62 (108)
T 2trx_A 19 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ---------------------------------- 62 (108)
T ss_dssp CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT----------------------------------
T ss_pred cCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-CcEEEEEECCC----------------------------------
Confidence 4789999999 99999999999999999999875 58888887753
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+.+
T Consensus 63 ~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~l~~~ 106 (108)
T 2trx_A 63 NPGTAPKYGIR------GIPTLLLF-KNGEVAATKVGALS----KGQLKEFLDAN 106 (108)
T ss_dssp CTTHHHHTTCC------SSSEEEEE-ETTEEEEEEESCCC----HHHHHHHHHHH
T ss_pred CHHHHHHcCCc------ccCEEEEE-eCCEEEEEEecCCC----HHHHHHHHHHh
Confidence 13577889998 89999999 89999988766543 56677777654
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-11 Score=88.68 Aligned_cols=89 Identities=13% Similarity=0.249 Sum_probs=73.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.|++++|.|| ++||++|+...|.+.++.+++++ ++.++.|+.|.
T Consensus 24 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~---------------------------------- 67 (115)
T 1thx_A 24 AEQPVLVYFW-ASWCGPCQLMSPLINLAANTYSD-RLKVVKLEIDP---------------------------------- 67 (115)
T ss_dssp CSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEESTT----------------------------------
T ss_pred CCceEEEEEE-CCCCHHHHHhHHHHHHHHHHhCC-cEEEEEEEcCC----------------------------------
Confidence 5789999999 99999999999999999999875 49999998764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+.+.
T Consensus 68 ~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~g~~----~~~~l~~~l~~~l 112 (115)
T 1thx_A 68 NPTTVKKYKVE------GVPALRLV-KGEQILDSTEGVI----SKDKLLSFLDTHL 112 (115)
T ss_dssp CHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHHH
T ss_pred CHHHHHHcCCC------ceeEEEEE-cCCEEEEEecCCC----CHHHHHHHHHHHh
Confidence 13577889998 89999999 8999998776643 3577777777654
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.31 E-value=9.6e-12 Score=89.57 Aligned_cols=88 Identities=16% Similarity=0.233 Sum_probs=71.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.||+++|.|| ++||++|+...|.+.++.+++++ ++.++.|+.|.
T Consensus 16 ~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~---------------------------------- 59 (105)
T 1nsw_A 16 GDGPVLVDFW-AAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDE---------------------------------- 59 (105)
T ss_dssp SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHSTT-TCEEEEEETTT----------------------------------
T ss_pred CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECcC----------------------------------
Confidence 4789999999 99999999999999999999875 48998888754
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+.+
T Consensus 60 ~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~l~~~ 103 (105)
T 1nsw_A 60 NPETTSQFGIM------SIPTLILF-KGGRPVKQLIGYQP----KEQLEAQLADV 103 (105)
T ss_dssp CHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCCC----HHHHHHHTTTT
T ss_pred CHHHHHHcCCc------cccEEEEE-eCCeEEEEEecCCC----HHHHHHHHHHH
Confidence 23577889998 89999999 89999888766543 46666666543
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-11 Score=88.08 Aligned_cols=88 Identities=15% Similarity=0.214 Sum_probs=72.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
++|+++|.|| ++||++|+...|.+.++++++++ .+.++.|+.|.
T Consensus 18 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~---------------------------------- 61 (106)
T 3die_A 18 ESGVQLVDFW-ATACGPCKMIAPVLEELAADYEG-KADILKLDVDE---------------------------------- 61 (106)
T ss_dssp CSSEEEEEEE-CSBCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------------
T ss_pred cCCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CcEEEEEECCc----------------------------------
Confidence 6899999999 99999999999999999999975 38999888753
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|++++++ +|+++..+.|.. +.+++.+.|+.+
T Consensus 62 ~~~~~~~~~v~------~~Pt~~~~~-~G~~~~~~~g~~----~~~~l~~~l~~~ 105 (106)
T 3die_A 62 NPSTAAKYEVM------SIPTLIVFK-DGQPVDKVVGFQ----PKENLAEVLDKH 105 (106)
T ss_dssp CHHHHHHTTCC------SBSEEEEEE-TTEEEEEEESCC----CHHHHHHHHHTT
T ss_pred CHHHHHhCCCc------ccCEEEEEe-CCeEEEEEeCCC----CHHHHHHHHHHh
Confidence 23567888998 899998885 899988776643 357777777653
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-11 Score=87.98 Aligned_cols=88 Identities=14% Similarity=0.331 Sum_probs=71.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.||+++|.|| ++||++|+...|.+.++++++++ ++.++.|+.|.
T Consensus 18 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~---------------------------------- 61 (107)
T 1dby_A 18 SSVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDE---------------------------------- 61 (107)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------------
T ss_pred CCCcEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-ceEEEEEECCC----------------------------------
Confidence 4789999999 99999999999999999999875 48898888753
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+.+
T Consensus 62 ~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~l~~~ 105 (107)
T 1dby_A 62 SPNVASEYGIR------SIPTIMVF-KGGKKCETIIGAVP----KATIVQTVEKY 105 (107)
T ss_dssp CHHHHHHHTCC------SSCEEEEE-SSSSEEEEEESCCC----HHHHHHHHHHH
T ss_pred CHHHHHHCCCC------cCCEEEEE-eCCEEEEEEeCCCC----HHHHHHHHHHH
Confidence 23677889998 88997777 79999988766543 46666666654
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=92.20 Aligned_cols=88 Identities=13% Similarity=0.194 Sum_probs=71.0
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 80 YRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 80 ~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
.+||+++|.|| ++||++|+...|.+.+++++++ ++.++.|+.+.
T Consensus 35 ~~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~~~~~~vd~~~--------------------------------- 78 (124)
T 1faa_A 35 AGDKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ--------------------------------- 78 (124)
T ss_dssp TTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS---------------------------------
T ss_pred cCCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHCC--CCEEEEEecCc---------------------------------
Confidence 46899999999 9999999999999999999886 68998888763
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
.+..+.+.|++. .+|+ ++++++|+++..+.|. ..+++.+.|+.+
T Consensus 79 ~~~~~~~~~~v~------~~Pt-~~~~~~G~~~~~~~G~-----~~~~l~~~i~~~ 122 (124)
T 1faa_A 79 ENKTLAKELGIR------VVPT-FKILKENSVVGEVTGA-----KYDKLLEAIQAA 122 (124)
T ss_dssp TTHHHHHHHCCS------SSSE-EEEEETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred chHHHHHHcCCC------eeeE-EEEEeCCcEEEEEcCC-----CHHHHHHHHHHh
Confidence 124677889998 8898 5566899999887654 257777777665
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-12 Score=99.27 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=75.1
Q ss_pred eEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcc
Q psy15453 74 EIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLK 153 (247)
Q Consensus 74 ~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (247)
.+..++.+||+++|.|| ++||++|+.+.|.+++++++++ ++.++.|+.|.
T Consensus 38 ~~~~~~~~~k~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~--~v~~~~v~~~~--------------------------- 87 (139)
T 3d22_A 38 KLSEASRDGKIVLANFS-ARWCGPSRQIAPYYIELSENYP--SLMFLVIDVDE--------------------------- 87 (139)
T ss_dssp HHHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT---------------------------
T ss_pred HHHHHhhcCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCcc---------------------------
Confidence 34444456999999999 9999999999999999999884 79999998863
Q ss_pred eeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 154 IPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 154 ~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|. +.+++.+.|+.+.
T Consensus 88 -------~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~~ 131 (139)
T 3d22_A 88 -------LSDFSASWEIK------ATPTFFFL-RDGQQVDKLVGA-----NKPELHKKITAIL 131 (139)
T ss_dssp -------SHHHHHHTTCC------EESEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHHH
T ss_pred -------cHHHHHHcCCC------cccEEEEE-cCCeEEEEEeCC-----CHHHHHHHHHHHh
Confidence 24677889998 89998887 899999887664 2466666666554
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.2e-12 Score=95.14 Aligned_cols=107 Identities=16% Similarity=0.128 Sum_probs=77.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|++||.|| ++||++|+...|.+.++++++++ .+.++.|+.|.
T Consensus 23 ~~~~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~---------------------------------- 66 (140)
T 3hz4_A 23 SKKPVVVMFY-SPACPYCKAMEPYFEEYAKEYGS-SAVFGRINIAT---------------------------------- 66 (140)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEETTT----------------------------------
T ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCc----------------------------------
Confidence 4889999999 99999999999999999999975 48999888753
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhcccc--cCCccCCCCcCCCc
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDE--HGEACPSGWQPGQR 234 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~~--~~~~~~~~~~~~~~ 234 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+.+..... .....+.+|..+.+
T Consensus 67 ~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 131 (140)
T 3hz4_A 67 NPWTAEKYGVQ------GTPTFKFF-CHGRPVWEQVGQIY----PSILKNAVRDMLQHGEECIRKSTPVGQDITGY 131 (140)
T ss_dssp CHHHHHHHTCC------EESEEEEE-ETTEEEEEEESSCC----HHHHHHHHHHHHHHHHHHHHTSBC--------
T ss_pred CHhHHHHCCCC------cCCEEEEE-eCCcEEEEEcCCCC----HHHHHHHHHHHhcccccCcccccccCccceee
Confidence 24677889998 89987777 78999888766543 5677777766654322 13457777766544
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-11 Score=87.45 Aligned_cols=88 Identities=23% Similarity=0.295 Sum_probs=72.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+++++|.|| ++||++|+...|.+.++.+++++ ++.++.|+.+.
T Consensus 19 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~---------------------------------- 62 (107)
T 2i4a_A 19 ASGLVLVDFW-AEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDD---------------------------------- 62 (107)
T ss_dssp CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEETTT----------------------------------
T ss_pred CCCEEEEEEE-CCCChhHHHHhHHHHHHHHHhCC-cEEEEEEECCC----------------------------------
Confidence 5789999999 99999999999999999999975 68898888753
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+.+
T Consensus 63 ~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~ 106 (107)
T 2i4a_A 63 NPETPNAYQVR------SIPTLMLV-RDGKVIDKKVGAL----PKSQLKAWVESA 106 (107)
T ss_dssp CCHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHT
T ss_pred CHHHHHhcCCC------ccCEEEEE-eCCEEEEEecCCC----CHHHHHHHHHhc
Confidence 23678889998 89999999 8999998776643 356777777654
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-11 Score=90.98 Aligned_cols=88 Identities=13% Similarity=0.183 Sum_probs=72.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.||++||.|| ++||++|+...|.|.+++++++. ++.++.|+.|.
T Consensus 30 ~~k~vlv~f~-a~~C~~C~~~~~~l~~~~~~~~~-~v~~~~vd~d~---------------------------------- 73 (119)
T 1w4v_A 30 SETPVVVDFH-AQWCGPCKILGPRLEKMVAKQHG-KVVMAKVDIDD---------------------------------- 73 (119)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEETTT----------------------------------
T ss_pred CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCC----------------------------------
Confidence 4789999999 99999999999999999998865 59999988763
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+.+
T Consensus 74 ~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~ 117 (119)
T 1w4v_A 74 HTDLAIEYEVS------AVPTVLAM-KNGDVVDKFVGIK----DEDQLEAFLKKL 117 (119)
T ss_dssp THHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred CHHHHHHcCCC------cccEEEEE-eCCcEEEEEcCCC----CHHHHHHHHHHH
Confidence 23677889998 89999999 8999988776543 356777777654
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-13 Score=108.17 Aligned_cols=106 Identities=15% Similarity=0.130 Sum_probs=76.8
Q ss_pred eeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCc
Q psy15453 73 KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKL 152 (247)
Q Consensus 73 ~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (247)
+.++....+||++||+|| ++||++|+.++|.|.++.+.++. ++.|+.|+.|....
T Consensus 37 ~~~~~~~~~~k~vlv~F~-a~WC~~C~~~~p~l~~~~~~~~~-~~~~~~v~~d~~~~----------------------- 91 (164)
T 1sen_A 37 DGKKEAAASGLPLMVIIH-KSWCGACKALKPKFAESTEISEL-SHNFVMVNLEDEEE----------------------- 91 (164)
T ss_dssp HHHHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHHTCHHHHHH-HTTSEEEEEEGGGS-----------------------
T ss_pred HHHHHHHhcCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhhc-CCeEEEEEecCCch-----------------------
Confidence 456666668999999999 99999999999999998766543 57788887764210
Q ss_pred ceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCC------CCCHHHHHHHHHhhhc
Q psy15453 153 KIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPV------GRSVEETLRLVRAFQY 217 (247)
Q Consensus 153 ~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~------~~~~~~il~~l~~l~~ 217 (247)
.+...|++. +..+|+++++|++|+++....|..+. ..+.+++++.|+.+..
T Consensus 92 ----------~~~~~~~~~----~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~ 148 (164)
T 1sen_A 92 ----------PKDEDFSPD----GGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQE 148 (164)
T ss_dssp ----------CSCGGGCTT----CSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHH
T ss_pred ----------HHHHHhccc----CCcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHH
Confidence 022344442 11689999999999998776665331 2567888888877653
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-11 Score=89.93 Aligned_cols=87 Identities=16% Similarity=0.274 Sum_probs=64.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+...|.+.++++++. ++.++.|+.|.
T Consensus 17 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~~~---------------------------------- 59 (105)
T 4euy_A 17 EQQLVLLFIK-TENCGVCDVMLRKVNYVLENYN--YVEKIEILLQD---------------------------------- 59 (105)
T ss_dssp CSSEEEEEEE-ESSCHHHHHHHHHHHHHHHTCT--TEEEEEEEECC----------------------------------
T ss_pred cCCCEEEEEe-CCCCcchHHHHHHHHHHHHHcC--CceEEEEECCC----------------------------------
Confidence 4789999999 9999999999999999999884 68888887763
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|++++++ +|+++..+.|.. +.+++.+.|+.+
T Consensus 60 ~~~l~~~~~v~------~~Pt~~~~~-~G~~~~~~~g~~----~~~~l~~~l~~~ 103 (105)
T 4euy_A 60 MQEIAGRYAVF------TGPTVLLFY-NGKEILRESRFI----SLENLERTIQLF 103 (105)
T ss_dssp C---------C------CCCEEEEEE-TTEEEEEEESSC----CHHHHHHHHHTT
T ss_pred CHHHHHhcCCC------CCCEEEEEe-CCeEEEEEeCCc----CHHHHHHHHHHh
Confidence 12566788888 899999995 899988876654 367777777654
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=93.29 Aligned_cols=88 Identities=16% Similarity=0.267 Sum_probs=72.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+...|.+.++++++++ ++.++.|+.|.
T Consensus 39 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~~~---------------------------------- 82 (128)
T 2o8v_B 39 ADGAILVDFW-AEWCGPAKMIAPILDEIADEYQG-KLTVAKLNIDQ---------------------------------- 82 (128)
T ss_dssp CSSEEEEEEE-CSSCHHHHHTHHHHHHHHHHTTT-TEEEEEEETTT----------------------------------
T ss_pred cCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCC----------------------------------
Confidence 5789999999 99999999999999999999875 58899888763
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+.+
T Consensus 83 ~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~l~~~ 126 (128)
T 2o8v_B 83 NPGTAPKYGIR------GIPTLLLF-KNGEVAATKVGALS----KGQLKEFLDAN 126 (128)
T ss_dssp CCTTSGGGTCC------SSSEEEEE-ETTEEEEEEESCCC----HHHHHHHHHHH
T ss_pred CHHHHHHcCCC------ccCEEEEE-eCCEEEEEEcCCCC----HHHHHHHHHHh
Confidence 12466788988 89999999 89999988766543 56777777654
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-11 Score=87.76 Aligned_cols=88 Identities=13% Similarity=0.219 Sum_probs=72.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+...|.+.++.+++++ .+.++.|+.|.
T Consensus 20 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~---------------------------------- 63 (109)
T 3tco_A 20 NNKLVLVDCW-AEWCAPCHLYEPIYKKVAEKYKG-KAVFGRLNVDE---------------------------------- 63 (109)
T ss_dssp HSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------------
T ss_pred cCCeEEEEEE-CCCCHHHHhhhHHHHHHHHHhCC-CceEEEEcccc----------------------------------
Confidence 4899999999 99999999999999999999875 58888887753
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
...+.+.|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+.+
T Consensus 64 ~~~~~~~~~i~------~~Pt~~~~-~~g~~~~~~~g~~~----~~~l~~~l~~~ 107 (109)
T 3tco_A 64 NQKIADKYSVL------NIPTTLIF-VNGQLVDSLVGAVD----EDTLESTVNKY 107 (109)
T ss_dssp CHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCCC----HHHHHHHHHHH
T ss_pred CHHHHHhcCcc------cCCEEEEE-cCCcEEEeeeccCC----HHHHHHHHHHH
Confidence 24677888998 89999999 89999988766543 56777777654
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-11 Score=89.19 Aligned_cols=88 Identities=20% Similarity=0.329 Sum_probs=71.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.||+++|.|| ++||++|+...|.+.++++++++ ++.++.|+.|.
T Consensus 22 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~---------------------------------- 65 (112)
T 1t00_A 22 NDKPVLVDFW-AAWCGPCRQIAPSLEAIAAEYGD-KIEIVKLNIDE---------------------------------- 65 (112)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------------
T ss_pred CCCeEEEEEE-CCCCHhHHhcCHHHHHHHHHhcC-CeEEEEEEcCC----------------------------------
Confidence 4789999999 99999999999999999999865 58999988764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+.+
T Consensus 66 ~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~l~~~ 109 (112)
T 1t00_A 66 NPGTAAKYGVM------SIPTLNVY-QGGEVAKTIVGAKP----KAAIVRDLEDF 109 (112)
T ss_dssp CHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCCC----HHHHHHHTHHH
T ss_pred CHHHHHhCCCC------cccEEEEE-eCCEEEEEEeCCCC----HHHHHHHHHHH
Confidence 23577889998 88987776 79999988766543 56676666654
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.4e-12 Score=95.76 Aligned_cols=97 Identities=7% Similarity=0.098 Sum_probs=73.3
Q ss_pred CceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCC
Q psy15453 71 NIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLD 150 (247)
Q Consensus 71 ~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (247)
++-.-.+++.+||++||.|| ++||++|+...|.+.++.+++ ++.++.|+.|.
T Consensus 29 ~~~~~~l~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~~~------------------------ 80 (133)
T 3cxg_A 29 GSLNQVFSSTQNSSIVIKFG-AVWCKPCNKIKEYFKNQLNYY---YVTLVDIDVDI------------------------ 80 (133)
T ss_dssp THHHHHHTC-CCSEEEEEEE-CTTCHHHHHTHHHHHGGGGTE---ECEEEEEETTT------------------------
T ss_pred hHHHHHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHhc---CEEEEEEeccc------------------------
Confidence 33333456667999999999 999999999999999887665 57787776543
Q ss_pred CcceeEEecCCchHHHHhCCcccCCCccceeEEEE-cCCCc--EEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 151 KLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFII-DREGI--VRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 151 ~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lI-d~~G~--v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+..+.+.|++. .+|+++++ |++|+ ++..+.|. +.+++.+.|+.+.
T Consensus 81 ----------~~~l~~~~~v~------~~Pt~~~~~~~~g~g~~~~~~~G~-----~~~~l~~~l~~~l 128 (133)
T 3cxg_A 81 ----------HPKLNDQHNIK------ALPTFEFYFNLNNEWVLVHTVEGA-----NQNDIEKAFQKYC 128 (133)
T ss_dssp ----------CHHHHHHTTCC------SSSEEEEEEEETTEEEEEEEEESC-----CHHHHHHHHHHHS
T ss_pred ----------hHHHHHhcCCC------CCCEEEEEEecCCCeEEEEEEcCC-----CHHHHHHHHHHHH
Confidence 24678889998 89999998 45666 88777554 2577888887764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=105.08 Aligned_cols=88 Identities=13% Similarity=0.244 Sum_probs=71.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+||+++|.|| ++||++|+...|.+.++.+++++ ++.|+.|+.|.
T Consensus 25 ~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~---------------------------------- 68 (287)
T 3qou_A 25 MTTPVLFYFW-SERSQHCLQLTPILESLAAQYNG-QFILAKLDCDA---------------------------------- 68 (287)
T ss_dssp TTSCEEEEEE-CTTCTTTTTTHHHHHHHHHHHTS-SSEEEEEETTT----------------------------------
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEEeCcc----------------------------------
Confidence 5899999999 99999999999999999999974 59999988764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|..+ .+.+.+.|+..
T Consensus 69 ~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~g~~~----~~~l~~~l~~~ 112 (287)
T 3qou_A 69 EQMIAAQFGLR------AIPTVYLF-QNGQPVDGFQGPQP----EEAIRALLDXV 112 (287)
T ss_dssp CHHHHHTTTCC------SSSEEEEE-ETTEEEEEEESCCC----HHHHHHHHHHH
T ss_pred CHHHHHHcCCC------CCCeEEEE-ECCEEEEEeeCCCC----HHHHHHHHHHH
Confidence 13678889998 89999999 68999987766543 45555666554
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=92.34 Aligned_cols=102 Identities=10% Similarity=0.087 Sum_probs=71.0
Q ss_pred ceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh-cCcEEEEEeCCChHhHHHHHHHhhccccccccCCC
Q psy15453 72 IKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK-IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRL 149 (247)
Q Consensus 72 G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~-~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 149 (247)
++.+...-. .+|+++|.|| ++||++|+...|.+.+++++++. .++.++.|+.+.
T Consensus 14 ~~~~~~~~~~~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~----------------------- 69 (133)
T 2dj3_A 14 GKTFDAIVMDPKKDVLIEFY-APWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATA----------------------- 69 (133)
T ss_dssp TTTCCCCCTCTTSEEEEEEC-CTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTT-----------------------
T ss_pred CCCHHHHhccCCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCc-----------------------
Confidence 344443322 4899999999 99999999999999999999974 357777776542
Q ss_pred CCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEE-EecCCCCCCCHHHHHHHHHhhhc
Q psy15453 150 DKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQI-TLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 150 ~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~-~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
+..+.+.|++. .+|++++++++|++..+ +.+.. .+.+++.+.|+.+..
T Consensus 70 -----------~~~~~~~~~v~------~~Pt~~~~~~g~~~~~~~~~gg~---~~~~~l~~~l~~~~~ 118 (133)
T 2dj3_A 70 -----------NDITNDQYKVE------GFPTIYFAPSGDKKNPIKFEGGN---RDLEHLSKFIDEHAT 118 (133)
T ss_dssp -----------SCCCCSSCCCS------SSSEEEEECTTCTTSCEECCSSC---CSTTHHHHHHHHHSS
T ss_pred -----------CHHHHhhcCCC------cCCEEEEEeCCCcccceEecCCC---cCHHHHHHHHHHhcc
Confidence 11334568888 89999999988765433 22221 234667777766543
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-11 Score=91.57 Aligned_cols=87 Identities=10% Similarity=0.187 Sum_probs=70.8
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 80 YRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 80 ~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
.+||+++|.|| ++||++|+...|.|.+++++++ ++.++.|+.|.
T Consensus 36 ~~~k~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~d~--------------------------------- 79 (124)
T 1xfl_A 36 ESKTLVVVDFT-ASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDE--------------------------------- 79 (124)
T ss_dssp HTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT---------------------------------
T ss_pred hcCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECcc---------------------------------
Confidence 36899999999 9999999999999999999885 78898888753
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|. +.+++.+.|+.+
T Consensus 80 -~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~ 122 (124)
T 1xfl_A 80 -LKSVASDWAIQ------AMPTFMFL-KEGKILDKVVGA-----KKDELQSTIAKH 122 (124)
T ss_dssp -SHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHH
T ss_pred -CHHHHHHcCCC------ccCEEEEE-ECCEEEEEEeCC-----CHHHHHHHHHHh
Confidence 24677889998 88987766 899999887652 356777777654
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.7e-11 Score=90.19 Aligned_cols=90 Identities=10% Similarity=0.107 Sum_probs=72.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh---cCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK---IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~---~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.+|++||.|| ++||++|+...|.+.++++++++ .++.++.|+.+.
T Consensus 24 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~------------------------------- 71 (133)
T 1x5d_A 24 SEDVWMVEFY-APWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV------------------------------- 71 (133)
T ss_dssp SSSEEEEEEE-CTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT-------------------------------
T ss_pred CCCeEEEEEE-CCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC-------------------------------
Confidence 4789999999 99999999999999999999973 468888887653
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+..+.+.|++. .+|+++++++ |+++..+.|.. +.+++.+.|+.+.
T Consensus 72 ---~~~l~~~~~v~------~~Pt~~~~~~-g~~~~~~~G~~----~~~~l~~~l~~~~ 116 (133)
T 1x5d_A 72 ---NQVLASRYGIR------GFPTIKIFQK-GESPVDYDGGR----TRSDIVSRALDLF 116 (133)
T ss_dssp ---CCHHHHHHTCC------SSSEEEEEET-TEEEEEECSCC----SHHHHHHHHHHHH
T ss_pred ---CHHHHHhCCCC------eeCeEEEEeC-CCceEEecCCC----CHHHHHHHHHHHh
Confidence 24788899998 8999999987 88777765533 3677777776654
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-11 Score=94.36 Aligned_cols=97 Identities=15% Similarity=0.120 Sum_probs=71.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
++ +++|.|| ++||++|+.++|.+.+++++++ +.++.|+.+....... . |.
T Consensus 31 ~~-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~---v~~~~vd~~~~~~~~~-~------------------------d~ 80 (135)
T 3emx_A 31 QG-DAILAVY-SKTCPHCHRDWPQLIQASKEVD---VPIVMFIWGSLIGERE-L------------------------SA 80 (135)
T ss_dssp TS-SEEEEEE-ETTCHHHHHHHHHHHHHHTTCC---SCEEEEEECTTCCHHH-H------------------------HH
T ss_pred CC-cEEEEEE-CCcCHhhhHhChhHHHHHHHCC---CEEEEEECCCchhhhh-h------------------------hh
Confidence 44 8999999 9999999999999999988774 8999998865433211 1 12
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhcc
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYT 218 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 218 (247)
...+.+.|++. .+|++++++ +|+++..+.|..+ .+.+.+.++.+...
T Consensus 81 ~~~l~~~~~v~------~~Pt~~~~~-~G~~v~~~~G~~~----~~~~~~~i~~~~~~ 127 (135)
T 3emx_A 81 ARLEMNKAGVE------GTPTLVFYK-EGRIVDKLVGATP----WSLKVEKAREIYGG 127 (135)
T ss_dssp HHHHHHHHTCC------SSSEEEEEE-TTEEEEEEESCCC----HHHHHHHHHHHC--
T ss_pred hHHHHHHcCCc------eeCeEEEEc-CCEEEEEEeCCCC----HHHHHHHHHHHhCC
Confidence 35788999999 899666665 9999998877544 45555666666543
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.27 E-value=9.4e-12 Score=95.67 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=72.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|+|| ++||++|+.+.|.+.++++++++ ++.++.|+.|.
T Consensus 22 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------------------- 65 (142)
T 1qgv_A 22 EDRVVVIRFG-HDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITE---------------------------------- 65 (142)
T ss_dssp SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTT----------------------------------
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEcccc----------------------------------
Confidence 4799999999 99999999999999999999964 58999988764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC------CCCCHHHHHHHHHhhhcc
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP------VGRSVEETLRLVRAFQYT 218 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~------~~~~~~~il~~l~~l~~~ 218 (247)
+..+.+.|++. .+|+++++ ++|+++....|... ...+.+++.+.|+.+...
T Consensus 66 ~~~~~~~~~i~------~~Pt~~~~-~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~ 122 (142)
T 1qgv_A 66 VPDFNKMYELY------DPCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRG 122 (142)
T ss_dssp CCTTTTSSCSC------SSCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHcCCC------CCCEEEEE-ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHH
Confidence 12456788888 89999998 47888876544211 122467788887776543
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-11 Score=87.22 Aligned_cols=88 Identities=13% Similarity=0.135 Sum_probs=71.3
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 79 DYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 79 ~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
+.++|+++|.|| ++||++|+...|.+.+++++++ ++.++.|+.|.
T Consensus 17 ~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~-------------------------------- 61 (105)
T 3m9j_A 17 AAGDKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDD-------------------------------- 61 (105)
T ss_dssp HTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHST--TSEEEEEETTT--------------------------------
T ss_pred hcCCCeEEEEEE-CCCChhhHHHHHHHHHHHHHcc--CeEEEEEEhhh--------------------------------
Confidence 346899999999 9999999999999999999886 58998888753
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
...+.+.|++. .+|+++++ ++|+++..+.|. +.+++.+.|+.+
T Consensus 62 --~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~l~~~ 104 (105)
T 3m9j_A 62 --CQDVASESEVK------SMPTFQFF-KKGQKVGEFSGA-----NKEKLEATINEL 104 (105)
T ss_dssp --CHHHHHHTTCC------BSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred --hHHHHHHcCCC------cCcEEEEE-ECCeEEEEEeCC-----CHHHHHHHHHHh
Confidence 24577888998 89999999 789888877554 356666666653
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-11 Score=93.49 Aligned_cols=89 Identities=8% Similarity=0.114 Sum_probs=74.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.++++||.|| ++||++|+...|.++++++++++ ++.++.|+.|.
T Consensus 63 ~~~~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~---------------------------------- 106 (155)
T 2ppt_A 63 DDLPLLVDFW-APWCGPCRQMAPQFQAAAATLAG-QVRLAKIDTQA---------------------------------- 106 (155)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------------
T ss_pred CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-CEEEEEEeCCc----------------------------------
Confidence 5789999999 99999999999999999999975 59999988763
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+.+.
T Consensus 107 ~~~l~~~~~i~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~l 151 (155)
T 2ppt_A 107 HPAVAGRHRIQ------GIPAFILF-HKGRELARAAGAR----PASELVGFVRGKL 151 (155)
T ss_dssp STHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHHH
T ss_pred cHHHHHHcCCC------cCCEEEEE-eCCeEEEEecCCC----CHHHHHHHHHHHh
Confidence 23678899998 89999998 7999998876643 3577777777654
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-11 Score=87.37 Aligned_cols=87 Identities=14% Similarity=0.210 Sum_probs=70.4
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
||+++|.|| ++||++|+...|.+.++.+++++ ++.++.|+.|. +
T Consensus 24 ~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------------~ 67 (112)
T 1ep7_A 24 HKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDA----------------------------------V 67 (112)
T ss_dssp TCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------------T
T ss_pred CCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEECCc----------------------------------h
Confidence 889999999 99999999999999999999875 79999988753 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
..+.+.|++. .+|+++++ ++|+++..+.|. +.+++.+.|+.+.
T Consensus 68 ~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~l 110 (112)
T 1ep7_A 68 AAVAEAAGIT------AMPTFHVY-KDGVKADDLVGA-----SQDKLKALVAKHA 110 (112)
T ss_dssp HHHHHHHTCC------BSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHHH
T ss_pred HHHHHHcCCC------cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHHHh
Confidence 4677889988 88986665 899999887654 3566777776553
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.1e-13 Score=100.45 Aligned_cols=101 Identities=18% Similarity=0.206 Sum_probs=75.7
Q ss_pred ceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCC
Q psy15453 72 IKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNR 148 (247)
Q Consensus 72 G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~ 148 (247)
.+.+++....||++||.|| ++||++|+...|.+ .++.+.+++ ++.++.|+.+..
T Consensus 9 ~~~~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~--------------------- 65 (130)
T 2lst_A 9 PEALALAQAHGRMVMVYFH-SEHCPYCQQMNTFVLSDPGVSRLLEA-RFVVASVSVDTP--------------------- 65 (130)
Confidence 4677777788999999999 99999999999999 888877764 577777766431
Q ss_pred CCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcC-CCcE--EEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 149 LDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDR-EGIV--RQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 149 ~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~-~G~v--~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
....+.+.|++. .+|+++++|+ +|++ +..+.|..+ .+++.+.|+.+.
T Consensus 66 -----------~~~~~~~~~~v~------~~Pt~~~~d~~~G~~~~~~~~~G~~~----~~~l~~~l~~~~ 115 (130)
T 2lst_A 66 -----------EGQELARRYRVP------GTPTFVFLVPKAGAWEEVGRLFGSRP----RAEFLKELRQVC 115 (130)
Confidence 124677888988 8999999996 5998 666655443 345555555544
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-11 Score=90.93 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=72.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.||++||.|| ++||++|+...|.|.++++++ .++.++.|+.+.
T Consensus 22 ~~~~vlv~f~-a~wC~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~---------------------------------- 64 (118)
T 2f51_A 22 APGLVLVDFF-ATWCGPCQRLGQILPSIAEAN--KDVTFIKVDVDK---------------------------------- 64 (118)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTT----------------------------------
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHC--CCeEEEEEECCC----------------------------------
Confidence 4889999999 999999999999999999988 489999998764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcC---CCcEEEEEecCCCCCCCHHHHHHHHHhhhcc
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDR---EGIVRQITLNDLPVGRSVEETLRLVRAFQYT 218 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~---~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 218 (247)
+..+.+.|++. .+|++++++. +|+++..+.|.. .+++.+.++.....
T Consensus 65 ~~~~~~~~~i~------~~Pt~~~~~~~~~~G~~~~~~~G~~-----~~~l~~~~~~~~~~ 114 (118)
T 2f51_A 65 NGNAADAYGVS------SIPALFFVKKEGNEIKTLDQFVGAD-----VSRIKADIEKFKHH 114 (118)
T ss_dssp CHHHHHHTTCC------SSSEEEEEEEETTEEEEEEEEESCC-----HHHHHHHHHHHC--
T ss_pred CHHHHHhcCCC------CCCEEEEEeCCCCcceEEEeecCCC-----HHHHHHHHHHhhhc
Confidence 13577889998 8999999976 489988876654 36666667666543
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-11 Score=89.73 Aligned_cols=88 Identities=13% Similarity=0.163 Sum_probs=72.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+...|.+.+++++++++++.++.|+.|.
T Consensus 32 ~~k~vvv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~---------------------------------- 76 (121)
T 2j23_A 32 GDKVVVIDFW-ATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE---------------------------------- 76 (121)
T ss_dssp SSSCEEEEEE-CTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTT----------------------------------
T ss_pred CCCEEEEEEE-CCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcC----------------------------------
Confidence 5789999999 99999999999999999999886679999988764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|. +.+++.+.|+.+
T Consensus 77 ~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~ 119 (121)
T 2j23_A 77 QSQIAQEVGIR------AMPTFVFF-KNGQKIDTVVGA-----DPSKLQAAITQH 119 (121)
T ss_dssp CHHHHHHHTCC------SSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred CHHHHHHcCCC------cccEEEEE-ECCeEEeeEcCC-----CHHHHHHHHHHh
Confidence 23677889988 88998888 589998887554 357777777654
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-11 Score=93.70 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=73.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+||++||.|| ++||++|+...|.+.+++++++ ++.++.|+.+.
T Consensus 31 ~~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~~~---------------------------------- 73 (153)
T 2wz9_A 31 AKSLLVVHFW-APWAPQCAQMNEVMAELAKELP--QVSFVKLEAEG---------------------------------- 73 (153)
T ss_dssp TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------------
T ss_pred CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHcC--CeEEEEEECCC----------------------------------
Confidence 5899999999 9999999999999999999874 79999998763
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
+..+.+.|++. .+|++++++ +|+++..+.|. ..+++.+.|+.+..
T Consensus 74 ~~~l~~~~~v~------~~Pt~~~~~-~G~~~~~~~G~-----~~~~l~~~i~~~l~ 118 (153)
T 2wz9_A 74 VPEVSEKYEIS------SVPTFLFFK-NSQKIDRLDGA-----HAPELTKKVQRHAS 118 (153)
T ss_dssp SHHHHHHTTCC------SSSEEEEEE-TTEEEEEEESS-----CHHHHHHHHHHHSC
T ss_pred CHHHHHHcCCC------CCCEEEEEE-CCEEEEEEeCC-----CHHHHHHHHHHHhc
Confidence 23677889998 899999999 99998877553 24677788877654
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=95.57 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=78.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.++++||.|| |+||++|+...|.|.++.+++++ .+.|+-|+.|.
T Consensus 40 ~~k~VVVdF~-A~WCgPCk~m~PvleelA~e~~~-~v~f~kVDVDe---------------------------------- 83 (160)
T 2av4_A 40 DERLVCIRFG-HDYDPDCMKMDELLYKVADDIKN-FCVIYLVDITE---------------------------------- 83 (160)
T ss_dssp SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTT----------------------------------
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccC-CcEEEEEECCC----------------------------------
Confidence 3689999999 99999999999999999999964 48888888874
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEE---------EecCCCCCCCHHHHHHHHHhhhcccccC---CccCCC
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQI---------TLNDLPVGRSVEETLRLVRAFQYTDEHG---EACPSG 228 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~---------~~~~~~~~~~~~~il~~l~~l~~~~~~~---~~~~~~ 228 (247)
..+++..|++. .+|+++++ ++|+.+.+ ..|. .++-+++.+.|+.+.....+| +.||-+
T Consensus 84 ~~e~a~~y~V~------siPT~~fF-k~G~~v~vd~Gtgd~~k~vGa---~~~k~~l~~~ie~~~r~a~~g~~~v~~p~~ 153 (160)
T 2av4_A 84 VPDFNTMYELY------DPVSVMFF-YRNKHMMIDLGTGNNNKINWP---MNNKQEFIDIVETIFRGARKGRGLVISPKD 153 (160)
T ss_dssp CCTTTTTTTCC------SSEEEEEE-ETTEEEEEECSSSCCSCBCSC---CCCHHHHHHHHHHHHHHHHTTCSEEECSSC
T ss_pred CHHHHHHcCCC------CCCEEEEE-ECCEEEEEecCCCCcCeEEee---cCCHHHHHHHHHHHHHHhhcCCeEEECCCc
Confidence 25678999999 89999877 57777642 2222 223567778887766655543 567766
Q ss_pred Cc
Q psy15453 229 WQ 230 (247)
Q Consensus 229 ~~ 230 (247)
|.
T Consensus 154 ~~ 155 (160)
T 2av4_A 154 YS 155 (160)
T ss_dssp C-
T ss_pred cc
Confidence 53
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.25 E-value=5e-11 Score=85.07 Aligned_cols=87 Identities=17% Similarity=0.302 Sum_probs=71.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
++|+++|.|| ++||++|+...|.+.+++++++ ++.++.|+.|.
T Consensus 15 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~--~~~~~~v~~~~---------------------------------- 57 (104)
T 2e0q_A 15 SHEIAVVDFW-AEWCAPCLILAPIIEELAEDYP--QVGFGKLNSDE---------------------------------- 57 (104)
T ss_dssp HSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------------
T ss_pred cCCcEEEEEE-CCCChhHHHHhHHHHHHHHHcC--CceEEEEECCC----------------------------------
Confidence 4789999999 9999999999999999999886 38999988763
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+.+
T Consensus 58 ~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~~~----~~~l~~~l~~~ 101 (104)
T 2e0q_A 58 NPDIAARYGVM------SLPTVIFF-KDGEPVDEIIGAVP----REEIEIRIKNL 101 (104)
T ss_dssp CHHHHHHTTCC------SSCEEEEE-ETTEEEEEEESCCC----HHHHHHHHHHH
T ss_pred CHHHHHhCCcc------ccCEEEEE-ECCeEhhhccCCCC----HHHHHHHHHHH
Confidence 23577888988 88999999 89999887766533 56677777655
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=4e-11 Score=89.48 Aligned_cols=88 Identities=10% Similarity=0.182 Sum_probs=70.5
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCc
Q psy15453 83 KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTH 162 (247)
Q Consensus 83 k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~ 162 (247)
+.++|.|| ++||++|+...|.+.++++++++.++.++.|+.+. +.
T Consensus 23 ~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~----------------------------------~~ 67 (126)
T 1x5e_A 23 GDWMIEFY-APWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTE----------------------------------QP 67 (126)
T ss_dssp SEEEEEEE-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTT----------------------------------CH
T ss_pred CCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcC----------------------------------CH
Confidence 34899999 99999999999999999999986679999988753 13
Q ss_pred hHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 163 EISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 163 ~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
.+.+.|++. .+|+++++ ++|++ ..+.|. .+.+++.+.|+.+..
T Consensus 68 ~~~~~~~v~------~~Pt~~~~-~~G~~-~~~~G~----~~~~~l~~~l~~~~~ 110 (126)
T 1x5e_A 68 GLSGRFIIN------ALPTIYHC-KDGEF-RRYQGP----RTKKDFINFISDKEW 110 (126)
T ss_dssp HHHHHTTCC------SSSEEEEE-ETTEE-EECCSC----CCHHHHHHHHHTCGG
T ss_pred HHHHHcCCc------ccCEEEEE-eCCeE-EEeecC----CCHHHHHHHHHHHhh
Confidence 577889998 89999999 88986 344332 346788888877653
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=92.43 Aligned_cols=89 Identities=13% Similarity=0.147 Sum_probs=70.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+...|.+.++++++++ .+.++.|+.|.
T Consensus 34 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------------- 77 (130)
T 2dml_A 34 SDGLWLVEFY-APWCGHCQRLTPEWKKAATALKD-VVKVGAVNADK---------------------------------- 77 (130)
T ss_dssp CSSCEEEEEE-CTTCSTTGGGHHHHHHHHHHTTT-TSEEEEEETTT----------------------------------
T ss_pred CCCeEEEEEE-CCCCHHHHhhCHHHHHHHHHhcC-ceEEEEEeCCC----------------------------------
Confidence 4789999999 99999999999999999999874 48888887653
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|++++++++|+++..+.|. .+.+++++.|+..
T Consensus 78 ~~~l~~~~~v~------~~Pt~~~~~~~~~~~~~~~G~----~~~~~l~~~l~~~ 122 (130)
T 2dml_A 78 HQSLGGQYGVQ------GFPTIKIFGANKNKPEDYQGG----RTGEAIVDAALSA 122 (130)
T ss_dssp CHHHHHHHTCC------SSSEEEEESSCTTSCEECCSC----CSHHHHHHHHHHH
T ss_pred CHHHHHHcCCC------ccCEEEEEeCCCCeEEEeecC----CCHHHHHHHHHHH
Confidence 24678889998 899999999999855554443 2356777776554
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-11 Score=88.58 Aligned_cols=85 Identities=15% Similarity=0.243 Sum_probs=68.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+||+++|.|| ++||++|+...|.+.+++++++ ++.++.|+.|.
T Consensus 29 ~~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~--~v~~~~vd~~~---------------------------------- 71 (114)
T 2oe3_A 29 QNDKLVIDFY-ATWCGPCKMMQPHLTKLIQAYP--DVRFVKCDVDE---------------------------------- 71 (114)
T ss_dssp HCSEEEEEEE-CTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT----------------------------------
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCC----------------------------------
Confidence 4899999999 9999999999999999999886 48999888763
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|.. .+++.+.|+.
T Consensus 72 ~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~-----~~~l~~~l~~ 113 (114)
T 2oe3_A 72 SPDIAKECEVT------AMPTFVLG-KDGQLIGKIIGAN-----PTALEKGIKD 113 (114)
T ss_dssp CHHHHHHTTCC------SBSEEEEE-ETTEEEEEEESSC-----HHHHHHHHHT
T ss_pred CHHHHHHCCCC------cccEEEEE-eCCeEEEEEeCCC-----HHHHHHHHHh
Confidence 23577888988 88987766 8999998776543 4666666654
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=4e-11 Score=86.86 Aligned_cols=86 Identities=9% Similarity=0.039 Sum_probs=68.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+...|.+.+++++++ ++.++.|+.|.
T Consensus 20 ~~~~v~v~f~-a~wC~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~---------------------------------- 62 (107)
T 1gh2_A 20 GSRLAVVKFT-MRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQ---------------------------------- 62 (107)
T ss_dssp TTSCEEEEEE-CSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------------
T ss_pred CCCEEEEEEE-CCCChhhHHHHHHHHHHHHHCC--CcEEEEEECcc----------------------------------
Confidence 5889999999 9999999999999999999884 79999988764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|.. .+++.+.|+.+
T Consensus 63 ~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~-----~~~l~~~l~~~ 105 (107)
T 1gh2_A 63 CQGTAATNNIS------ATPTFQFF-RNKVRIDQYQGAD-----AVGLEEKIKQH 105 (107)
T ss_dssp SHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESSC-----HHHHHHHHHHH
T ss_pred CHHHHHhcCCC------cccEEEEE-ECCeEEEEEeCCC-----HHHHHHHHHHh
Confidence 13577889998 88988888 7899988776632 34566666554
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.9e-11 Score=88.37 Aligned_cols=87 Identities=20% Similarity=0.281 Sum_probs=70.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+...|.+.++.++++ ++.++.|+.|.
T Consensus 33 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~vd~~~---------------------------------- 75 (122)
T 2vlu_A 33 AKKLVVIDFT-ASWCGPCRIMAPVFADLAKKFP--NAVFLKVDVDE---------------------------------- 75 (122)
T ss_dssp TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------------
T ss_pred cCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECCC----------------------------------
Confidence 5889999999 9999999999999999999886 48999888764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|.. .+++.+.|+.+.
T Consensus 76 ~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~-----~~~l~~~l~~~l 119 (122)
T 2vlu_A 76 LKPIAEQFSVE------AMPTFLFM-KEGDVKDRVVGAI-----KEELTAKVGLHA 119 (122)
T ss_dssp CHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESSC-----HHHHHHHHHHHH
T ss_pred CHHHHHHcCCC------cccEEEEE-eCCEEEEEEeCcC-----HHHHHHHHHHHh
Confidence 23677888988 88986666 8999998775543 467777776654
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.24 E-value=6.4e-11 Score=85.36 Aligned_cols=89 Identities=13% Similarity=0.229 Sum_probs=73.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+...|.+.++.+++++ ++.++.|+.|.
T Consensus 17 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~---------------------------------- 60 (109)
T 2yzu_A 17 QHPLVLVDFW-AEWCAPCRMIAPILEEIAKEYEG-KLLVAKLDVDE---------------------------------- 60 (109)
T ss_dssp HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTT----------------------------------
T ss_pred CCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHhhC-ceEEEEEECCC----------------------------------
Confidence 4789999999 99999999999999999999874 58998888764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+.+.
T Consensus 61 ~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~~l 105 (109)
T 2yzu_A 61 NPKTAMRYRVM------SIPTVILF-KDGQPVEVLVGAQ----PKRNYQAKIEKHL 105 (109)
T ss_dssp CHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHTTC
T ss_pred CHhHHHhCCCC------cCCEEEEE-eCCcEeeeEeCCC----CHHHHHHHHHHHh
Confidence 23577889998 88999999 8999988776643 3677888887654
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.23 E-value=7.2e-11 Score=85.69 Aligned_cols=88 Identities=14% Similarity=0.240 Sum_probs=71.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+++++|.|| ++||++|+...|.+.++.+++++ ++.++.|+.|.
T Consensus 21 ~~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~---------------------------------- 64 (111)
T 3gnj_A 21 EGKACLVMFS-RKNCHVCQKVTPVLEELRLNYEE-SFGFYYVDVEE---------------------------------- 64 (111)
T ss_dssp SCCCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------------
T ss_pred cCCEEEEEEe-CCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCc----------------------------------
Confidence 4789999999 99999999999999999999874 58999888763
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
...+.+.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+.+
T Consensus 65 ~~~l~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~~ 108 (111)
T 3gnj_A 65 EKTLFQRFSLK------GVPQILYF-KDGEYKGKMAGDV----EDDEVEQMIADV 108 (111)
T ss_dssp CHHHHHHTTCC------SSCEEEEE-ETTEEEEEEESSC----CHHHHHHHHHHH
T ss_pred ChhHHHhcCCC------cCCEEEEE-ECCEEEEEEeccC----CHHHHHHHHHHH
Confidence 23677889998 89999999 6899887776653 356777777654
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.22 E-value=8.8e-11 Score=84.25 Aligned_cols=88 Identities=13% Similarity=0.259 Sum_probs=69.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+...|.+.++++++++ ++.++.|+.+.
T Consensus 17 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~---------------------------------- 60 (105)
T 1fb6_A 17 SEVPVMVDFW-APWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDE---------------------------------- 60 (105)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------------
T ss_pred CCCcEEEEEE-CCCChHHHHHHHHHHHHHHHhcC-ceEEEEEcCcc----------------------------------
Confidence 4789999999 99999999999999999998875 48888887763
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+.+
T Consensus 61 ~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~~~----~~~l~~~l~~~ 104 (105)
T 1fb6_A 61 APGIATQYNIR------SIPTVLFF-KNGERKESIIGAVP----KSTLTDSIEKY 104 (105)
T ss_dssp CHHHHHHTTCC------SSSEEEEE-ETTEEEEEEEECCC----HHHHHHHHHHH
T ss_pred hHHHHHhCCCC------cccEEEEE-eCCeEEEEEecCCC----HHHHHHHHHhh
Confidence 23677888888 88987776 79999988766543 45666666543
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.22 E-value=3e-11 Score=89.00 Aligned_cols=88 Identities=20% Similarity=0.347 Sum_probs=69.5
Q ss_pred CCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 78 TDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 78 ~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.+.+||+++|.|| ++||++|+...|.+.++++++ ++.++.|+.|.
T Consensus 29 ~~~~~~~~vv~f~-a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~~~------------------------------- 73 (117)
T 2xc2_A 29 EQHKNKLVVVDFF-ATWCGPCKTIAPLFKELSEKY---DAIFVKVDVDK------------------------------- 73 (117)
T ss_dssp HHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHTTS---SSEEEEEETTT-------------------------------
T ss_pred HhCCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHc---CcEEEEEECCc-------------------------------
Confidence 3447899999999 999999999999999998877 78898887753
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|. +.+++.+.|+.+
T Consensus 74 ---~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~ 116 (117)
T 2xc2_A 74 ---LEETARKYNIS------AMPTFIAI-KNGEKVGDVVGA-----SIAKVEDMIKKF 116 (117)
T ss_dssp ---SHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred ---cHHHHHHcCCC------ccceEEEE-eCCcEEEEEeCC-----CHHHHHHHHHHh
Confidence 24677889988 88986666 799998887662 246666666653
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.21 E-value=6.6e-11 Score=86.49 Aligned_cols=88 Identities=16% Similarity=0.196 Sum_probs=70.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+...|.+.++.+++. ++.++.|+.+.
T Consensus 18 ~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------------------------------- 60 (110)
T 2l6c_A 18 GLSDAIVFFH-KNLCPHCKNMEKVLDKFGARAP--QVAISSVDSEA---------------------------------- 60 (110)
T ss_dssp TCSEEEEEEE-CSSCSTHHHHHHHHHHHHTTCT--TSCEEEEEGGG----------------------------------
T ss_pred cCCCEEEEEE-CCCCHhHHHHHHHHHHHHHHCC--CcEEEEEcCcC----------------------------------
Confidence 4789999999 9999999999999999988775 68888876642
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
...+.+.|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+...
T Consensus 61 ~~~l~~~~~v~------~~Pt~~~~-~~G~~v~~~~G~~~----~~~l~~~~~~~~ 105 (110)
T 2l6c_A 61 RPELMKELGFE------RVPTLVFI-RDGKVAKVFSGIMN----PRELQALYASIH 105 (110)
T ss_dssp CHHHHHHTTCC------SSCEEEEE-ESSSEEEEEESCCC----HHHHHHHHHTC-
T ss_pred CHHHHHHcCCc------ccCEEEEE-ECCEEEEEEcCCCC----HHHHHHHHHHHh
Confidence 24677889998 89999999 89999988766543 577777777654
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.3e-11 Score=84.24 Aligned_cols=89 Identities=16% Similarity=0.256 Sum_probs=70.4
Q ss_pred CCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 78 TDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 78 ~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
++..||+++|.|| ++|||+|+...|.+.++.++++ ++.++.|+.+.
T Consensus 15 ~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~------------------------------- 60 (104)
T 2vim_A 15 NENKGRLIVVDFF-AQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQ------------------------------- 60 (104)
T ss_dssp HTTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------------------------------
T ss_pred HhcCCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHCC--CCEEEEEeccC-------------------------------
Confidence 3346899999999 9999999999999999998885 79999998763
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
...+.+.|++. .+|+++++ ++|+++..+.| . +.+++.+.|+.+
T Consensus 61 ---~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G-~----~~~~l~~~l~~~ 103 (104)
T 2vim_A 61 ---NEEAAAKYSVT------AMPTFVFI-KDGKEVDRFSG-A----NETKLRETITRH 103 (104)
T ss_dssp ---CHHHHHHTTCC------SSSEEEEE-ETTEEEEEEES-S----CHHHHHHHHHHH
T ss_pred ---CHHHHHHcCCc------cccEEEEE-eCCcEEEEEeC-C----CHHHHHHHHHhh
Confidence 13577888888 88987777 58999887765 2 246666666653
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=86.05 Aligned_cols=90 Identities=14% Similarity=0.178 Sum_probs=66.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.|++++|.|| ++|||+|+...|.+.+++++++ ..++.++.+...+.. .
T Consensus 28 ~~~~~~v~f~-a~wC~~C~~~~p~l~~~~~~~~---~~v~~~~~~~~~~~~----------------------------~ 75 (118)
T 1zma_A 28 KKETATFFIG-RKTCPYCRKFAGTLSGVVAETK---AHIYFINSEEPSQLN----------------------------D 75 (118)
T ss_dssp TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTCGGGHH----------------------------H
T ss_pred CCCeEEEEEE-CCCCccHHHHHHHHHHHHHhcC---CeEEEEECCCcCcHH----------------------------H
Confidence 4789999999 9999999999999999998874 456667766532211 1
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVR 213 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~ 213 (247)
...+.+.|++. .+|++++++ +|+++..+.|.. ..+++.+.|+
T Consensus 76 ~~~~~~~~~i~------~~Pt~~~~~-~G~~~~~~~G~~----~~~~l~~~l~ 117 (118)
T 1zma_A 76 LQAFRSRYGIP------TVPGFVHIT-DGQINVRCDSSM----SAQEIKDFAG 117 (118)
T ss_dssp HHHHHHHHTCC------SSCEEEEEE-TTEEEEECCTTC----CHHHHHHHHT
T ss_pred HHHHHHHcCCC------CCCeEEEEE-CCEEEEEecCCC----CHHHHHHHhh
Confidence 14677889998 899999994 898887765533 3566666553
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-10 Score=84.89 Aligned_cols=86 Identities=13% Similarity=0.240 Sum_probs=69.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.||+++|.|| ++||++|+...|.+.++.++++ ++.++.|+.+.
T Consensus 25 ~~k~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~---------------------------------- 67 (112)
T 1syr_A 25 QNELVIVDFF-AEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDE---------------------------------- 67 (112)
T ss_dssp HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------------
T ss_pred cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcC--CCEEEEEECCC----------------------------------
Confidence 5899999999 9999999999999999999886 69999998764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|. +.+++.+.|+.+
T Consensus 68 ~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~ 110 (112)
T 1syr_A 68 VSEVTEKENIT------SMPTFKVY-KNGSSVDTLLGA-----NDSALKQLIEKY 110 (112)
T ss_dssp THHHHHHTTCC------SSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHTT
T ss_pred CHHHHHHcCCC------cccEEEEE-ECCcEEEEEeCC-----CHHHHHHHHHHh
Confidence 13677888888 88986665 699998877554 357777777654
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.19 E-value=5.3e-11 Score=87.96 Aligned_cols=98 Identities=11% Similarity=0.080 Sum_probs=70.8
Q ss_pred CceeEEcC-CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh----cCcEEEEEeCCChHhHHHHHHHhhccccccc
Q psy15453 71 NIKEIKLT-DYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK----IGAEVVGVSVDSHFTHRAWINSLKKDNSLKK 145 (247)
Q Consensus 71 ~G~~v~l~-~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~----~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~ 145 (247)
+++.+... .-++|+++|.|| ++||++|+...|.+.+++++++. .++.++.|+.+.
T Consensus 13 ~~~~f~~~v~~~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~------------------- 72 (121)
T 2djj_A 13 VAKNYNEIVLDDTKDVLIEFY-APWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATA------------------- 72 (121)
T ss_dssp CTTTTTTSSSCTTSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTT-------------------
T ss_pred cccCHHHHhhcCCCCEEEEEE-CCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcc-------------------
Confidence 33444433 236899999999 99999999999999999999975 268888887753
Q ss_pred cCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcE-EEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 146 DNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIV-RQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 146 ~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v-~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
. . +.+ ++. .+|++++++++|++ ...+.| ..+.+++.+.|+...
T Consensus 73 -----~-~----------~~~--~v~------~~Pt~~~~~~~~~~~~~~~~G----~~~~~~l~~~i~~~~ 116 (121)
T 2djj_A 73 -----N-D----------VPD--EIQ------GFPTIKLYPAGAKGQPVTYSG----SRTVEDLIKFIAENG 116 (121)
T ss_dssp -----S-C----------CSS--CCS------SSSEEEEECSSCTTSCCCCCC----CSCHHHHHHHHHHTS
T ss_pred -----c-c----------ccc--ccC------cCCeEEEEeCcCCCCceEecC----CCCHHHHHHHHHhcc
Confidence 1 1 111 666 88999999998884 333333 234688888887653
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=7.7e-11 Score=88.45 Aligned_cols=87 Identities=18% Similarity=0.178 Sum_probs=70.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|++||.|| ++||++|+...|.+.+++++++ ++.++.|+.|.
T Consensus 36 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~---------------------------------- 78 (125)
T 1r26_A 36 EDILTVAWFT-AVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADN---------------------------------- 78 (125)
T ss_dssp SSSCEEEEEE-CTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT----------------------------------
T ss_pred cCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCC----------------------------------
Confidence 5889999999 9999999999999999999884 69999998863
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+..+.+.|++. .+|+++++ ++|+++..+.| . +.+++.+.|+.+.
T Consensus 79 ~~~l~~~~~v~------~~Pt~~i~-~~G~~~~~~~G-~----~~~~l~~~l~~~l 122 (125)
T 1r26_A 79 NSEIVSKCRVL------QLPTFIIA-RSGKMLGHVIG-A----NPGMLRQKLRDII 122 (125)
T ss_dssp CHHHHHHTTCC------SSSEEEEE-ETTEEEEEEES-S----CHHHHHHHHHHHH
T ss_pred CHHHHHHcCCC------cccEEEEE-eCCeEEEEEeC-C----CHHHHHHHHHHHh
Confidence 23677889998 88987666 89999887765 2 3467777776654
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-10 Score=82.71 Aligned_cols=88 Identities=19% Similarity=0.297 Sum_probs=69.7
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 80 YRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 80 ~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
.++|+++|.|| ++||++|+...|.+.++.++++ .++.++.|+.|.
T Consensus 18 ~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~v~~~~--------------------------------- 62 (106)
T 1xwb_A 18 ASGKLVVLDFF-ATWCGPCKMISPKLVELSTQFA-DNVVVLKVDVDE--------------------------------- 62 (106)
T ss_dssp HTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTT-TTEEEEEEETTT---------------------------------
T ss_pred cCCCEEEEEEE-CCcCHHHHHhhHHHHHHHHHhC-CCeEEEEEeccc---------------------------------
Confidence 46899999999 9999999999999999999886 378998888763
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.| . +.+++.+.|+.+
T Consensus 63 -~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~g-~----~~~~l~~~i~~~ 105 (106)
T 1xwb_A 63 -CEDIAMEYNIS------SMPTFVFL-KNGVKVEEFAG-A----NAKRLEDVIKAN 105 (106)
T ss_dssp -CHHHHHHTTCC------SSSEEEEE-ETTEEEEEEES-C----CHHHHHHHHHHT
T ss_pred -hHHHHHHcCCC------cccEEEEE-cCCcEEEEEcC-C----CHHHHHHHHHHh
Confidence 23577888888 88986666 78999887755 2 246666666653
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-10 Score=85.03 Aligned_cols=87 Identities=18% Similarity=0.319 Sum_probs=70.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.||+++|.|| ++||++|+...|.+.++.++++ ++.++.|+.|.
T Consensus 27 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~---------------------------------- 69 (118)
T 2vm1_A 27 TGKLVIIDFT-ASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVDE---------------------------------- 69 (118)
T ss_dssp HTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------------
T ss_pred CCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEccc----------------------------------
Confidence 4889999999 9999999999999999999886 79999887753
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
...+.+.|++. .+|+++++ ++|+++..+.|. +.+++.+.|+.+.
T Consensus 70 ~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~l~~~~ 113 (118)
T 2vm1_A 70 LKDVAEAYNVE------AMPTFLFI-KDGEKVDSVVGG-----RKDDIHTKIVALM 113 (118)
T ss_dssp SHHHHHHTTCC------SBSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHHH
T ss_pred CHHHHHHcCCC------cCcEEEEE-eCCeEEEEecCC-----CHHHHHHHHHHHh
Confidence 24677888988 88988777 799998877552 3577777777654
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.5e-11 Score=99.05 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=81.7
Q ss_pred CCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhh
Q psy15453 59 APYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLK 138 (247)
Q Consensus 59 ~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~ 138 (247)
.++..+..+ +++.+......|+++||.|| ++||++|+...|.+.++++++++ .+.++.|+.+.
T Consensus 94 ~~~~~v~~l---~~~~f~~~~~~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~~~------------ 156 (210)
T 3apq_A 94 DDDPEIITL---ERREFDAAVNSGELWFVNFY-SPGCSHCHDLAPTWREFAKEVDG-LLRIGAVNCGD------------ 156 (210)
T ss_dssp TTCTTSEEC---CHHHHHHHHHHSCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTT------------
T ss_pred CCCCceEEe---cHHHHHHHHccCCcEEEEEe-CCCChhHHHHHHHHHHHHHHhcC-ceEEEEEECCc------------
Confidence 344454333 45555444346899999999 99999999999999999999864 58898888754
Q ss_pred ccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 139 KDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|. .+.+++.+.|+.+.
T Consensus 157 ----------------------~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~i~~~l 201 (210)
T 3apq_A 157 ----------------------DRMLCRMKGVN------SYPSLFIF-RSGMAAVKYNGD----RSKESLVAFAMQHV 201 (210)
T ss_dssp ----------------------CHHHHHHTTCC------SSSEEEEE-CTTSCCEECCSC----CCHHHHHHHHHHHH
T ss_pred ----------------------cHHHHHHcCCC------cCCeEEEE-ECCCceeEecCC----CCHHHHHHHHHHhC
Confidence 13577888998 89999999 899987776553 34678888887664
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-10 Score=86.70 Aligned_cols=90 Identities=7% Similarity=-0.014 Sum_probs=69.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh----cCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK----IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPL 156 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~----~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (247)
.+|+++|.|| ++||++|+...|.+.++.+++.. .++.++.|+.+.
T Consensus 32 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~------------------------------ 80 (127)
T 3h79_A 32 PEKDVFVLYY-VPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEK------------------------------ 80 (127)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTT------------------------------
T ss_pred CCCCEEEEEE-CCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccc------------------------------
Confidence 3789999999 99999999999999999998863 247777776653
Q ss_pred EecCCchHHHHhCCcccCCCccceeEEEEcCCCcEE-EEEecCCCCCCCHHHHHHHHHhh
Q psy15453 157 LSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVR-QITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 157 l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~-~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++++++++. ..+.| ..+.+++.+.|+.+
T Consensus 81 ----~~~l~~~~~v~------~~Pt~~~~~~g~~~~~~~~~G----~~~~~~l~~~i~~~ 126 (127)
T 3h79_A 81 ----YPDVIERMRVS------GFPTMRYYTRIDKQEPFEYSG----QRYLSLVDSFVFQN 126 (127)
T ss_dssp ----CHHHHHHTTCC------SSSEEEEECSSCSSSCEECCS----CCCHHHHHHHHHHH
T ss_pred ----cHhHHHhcCCc------cCCEEEEEeCCCCCCceEecC----CccHHHHHHHHHhc
Confidence 24678899999 899999998877753 23323 34578888888764
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.6e-11 Score=90.67 Aligned_cols=90 Identities=14% Similarity=0.182 Sum_probs=70.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcC--cEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG--AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~--~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
.+|++||.|| ++||++|+...|.+.++++++++.+ +.++.|+.+.
T Consensus 33 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------------- 79 (140)
T 2dj1_A 33 DKDTVLLEFY-APWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS-------------------------------- 79 (140)
T ss_dssp TCSEEEEEEC-CTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTT--------------------------------
T ss_pred cCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcc--------------------------------
Confidence 5789999999 9999999999999999999998653 6776665542
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
+..+.+.|++. .+|+++++ ++|+ +..+.| ..+.+++.+.|+.+..
T Consensus 80 --~~~~~~~~~v~------~~Pt~~~~-~~G~-~~~~~g----~~~~~~l~~~l~~~~~ 124 (140)
T 2dj1_A 80 --ASMLASKFDVS------GYPTIKIL-KKGQ-AVDYDG----SRTQEEIVAKVREVSQ 124 (140)
T ss_dssp --CHHHHHHTTCC------SSSEEEEE-ETTE-EEECCS----CCCHHHHHHHHHHHHS
T ss_pred --cHHHHHHCCCC------ccCeEEEE-ECCc-EEEcCC----CCCHHHHHHHHHHhcC
Confidence 24688899998 89999999 7888 434433 2346888888877653
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.17 E-value=9.8e-11 Score=84.86 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=68.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc--CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI--GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
+++++|.|| ++||++|+...|.+.++.+++... ++.++.|+.+.
T Consensus 21 ~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--------------------------------- 66 (111)
T 3uvt_A 21 EGITFIKFY-APWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA--------------------------------- 66 (111)
T ss_dssp SSEEEEEEE-CSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTT---------------------------------
T ss_pred CCcEEEEEE-CCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccc---------------------------------
Confidence 789999999 999999999999999998877533 67777777653
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+.
T Consensus 67 -~~~l~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~ 109 (111)
T 3uvt_A 67 -ERNICSKYSVR------GYPTLLLF-RGGKKVSEHSGGR----DLDSLHRFVLS 109 (111)
T ss_dssp -CHHHHHHTTCC------SSSEEEEE-ETTEEEEEECSCC----SHHHHHHHHHH
T ss_pred -cHhHHHhcCCC------cccEEEEE-eCCcEEEeccCCc----CHHHHHHHHHh
Confidence 23577889998 89998888 7898888775543 46777777764
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.5e-11 Score=88.09 Aligned_cols=94 Identities=11% Similarity=0.063 Sum_probs=72.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+...|.+.++++++++ ++.++.|+.+.
T Consensus 20 ~~~~~lv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------------- 63 (122)
T 3aps_A 20 GKTHWVVDFY-APWCGPCQNFAPEFELLARMIKG-KVRAGKVDCQA---------------------------------- 63 (122)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------------
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCcC----------------------------------
Confidence 4789999999 99999999999999999999875 68999988764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
+..+.+.|++. .+|++++++++|++... .|......+.+++.+.|+.+..
T Consensus 64 ~~~~~~~~~v~------~~Pt~~~~~~~~~~~~~-~g~~~~~~~~~~l~~~l~~~l~ 113 (122)
T 3aps_A 64 YPQTCQKAGIK------AYPSVKLYQYERAKKSI-WEEQINSRDAKTIAALIYGKLE 113 (122)
T ss_dssp CHHHHHHTTCC------SSSEEEEEEEEGGGTEE-EEEEECCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHcCCC------ccceEEEEeCCCcccee-eccccCcCCHHHHHHHHHHHHH
Confidence 13577889998 89999999988874333 2321112346777777776653
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=84.47 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=68.5
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 80 YRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 80 ~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
..||+++|.|| ++||++|+...|.++++.++++ ++.++.|+.|.
T Consensus 24 ~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~--------------------------------- 67 (113)
T 1ti3_A 24 GSQKLIVVDFT-ASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDE--------------------------------- 67 (113)
T ss_dssp TSSSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT---------------------------------
T ss_pred hcCCeEEEEEE-CCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEccc---------------------------------
Confidence 45899999999 9999999999999999998885 78898888753
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
...+.+.|++. .+|+++++ ++|+++..+.| .+ . +++.+.|+.+
T Consensus 68 -~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~g-~~-~---~~l~~~l~~~ 110 (113)
T 1ti3_A 68 -LKAVAEEWNVE------AMPTFIFL-KDGKLVDKTVG-AD-K---DGLPTLVAKH 110 (113)
T ss_dssp -CHHHHHHHHCS------STTEEEEE-ETTEEEEEEEC-CC-T---THHHHHHHHH
T ss_pred -cHHHHHhCCCC------cccEEEEE-eCCEEEEEEec-CC-H---HHHHHHHHHh
Confidence 23567888888 88998888 69999988766 22 2 4455555544
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-10 Score=94.76 Aligned_cols=90 Identities=18% Similarity=0.286 Sum_probs=73.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+.++|.+.++++++++ .+.++.|+.|.
T Consensus 29 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------------------- 72 (222)
T 3dxb_A 29 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ---------------------------------- 72 (222)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------------
T ss_pred cCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCC----------------------------------
Confidence 4789999999 99999999999999999999975 48999988764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
+..+.+.|++. .+|++++++ +|+++..+.|.. +.+++.+.|+.+..
T Consensus 73 ~~~l~~~~~v~------~~Pt~~~~~-~G~~~~~~~G~~----~~~~l~~~l~~~l~ 118 (222)
T 3dxb_A 73 NPGTAPKYGIR------GIPTLLLFK-NGEVAATKVGAL----SKGQLKEFLDANLA 118 (222)
T ss_dssp CTTTGGGGTCC------SBSEEEEEE-TTEEEEEEESCC----CHHHHHHHHHHHSC
T ss_pred CHHHHHHcCCC------cCCEEEEEE-CCeEEEEecccc----ChHHHHHHHHhhcc
Confidence 13456788998 899988885 899988776653 36778888877654
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-10 Score=84.83 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=70.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+...|.+.++.++++. ++.++.|+.+.
T Consensus 29 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~---------------------------------- 72 (121)
T 2i1u_A 29 SNKPVLVDFW-ATWCGPCKMVAPVLEEIATERAT-DLTVAKLDVDT---------------------------------- 72 (121)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------------
T ss_pred CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------------------
Confidence 4789999999 99999999999999999999864 58999988763
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+.+
T Consensus 73 ~~~~~~~~~i~------~~Pt~~~~-~~g~~~~~~~G~~~----~~~l~~~l~~~ 116 (121)
T 2i1u_A 73 NPETARNFQVV------SIPTLILF-KDGQPVKRIVGAKG----KAALLRELSDV 116 (121)
T ss_dssp CHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCCC----HHHHHHHTCSC
T ss_pred CHHHHHhcCCC------cCCEEEEE-ECCEEEEEecCCCC----HHHHHHHHHHH
Confidence 13577889998 88998887 58999887766543 56677766654
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-10 Score=87.28 Aligned_cols=89 Identities=17% Similarity=0.237 Sum_probs=69.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+||++||.|| ++||++|+...|.+.+++++|. ++.++.|+.+. ..
T Consensus 29 ~~~~vvv~f~-a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~~~------------------------~~-------- 73 (135)
T 2dbc_A 29 KDLWVVIHLY-RSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVNS------------------------CI-------- 73 (135)
T ss_dssp SSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEECCSS------------------------SC--------
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEEhhc------------------------Cc--------
Confidence 3689999999 9999999999999999998884 68888887653 10
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCC---CCHHHHHHHHHhhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVG---RSVEETLRLVRAFQ 216 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~---~~~~~il~~l~~l~ 216 (247)
+.|++. .+|++++++ +|+++..+.|..+.+ ...+++.+.|+...
T Consensus 74 -----~~~~i~------~~Pt~~~~~-~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~ 120 (135)
T 2dbc_A 74 -----EHYHDN------CLPTIFVYK-NGQIEGKFIGIIECGGINLKLEELEWKLSEVG 120 (135)
T ss_dssp -----SSCCSS------CCSEEEEES-SSSCSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred -----ccCCCC------CCCEEEEEE-CCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence 467787 889999996 899988887765432 25677777776653
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=86.85 Aligned_cols=88 Identities=17% Similarity=0.309 Sum_probs=67.3
Q ss_pred CCCeEEEEEEeCCCCC--------------CcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhcccccccc
Q psy15453 81 RGKYLVFFFYPLDFTF--------------VCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKD 146 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp--------------~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~ 146 (247)
.||+++|.|| ++||+ +|+...|.+.++++++++ ++.++.|+.|.
T Consensus 20 ~~k~vlv~F~-a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~-~~~~~~vd~d~-------------------- 77 (123)
T 1oaz_A 20 ADGAILVDFW-AEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ-------------------- 77 (123)
T ss_dssp CSSEEEEEEE-CSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEETTS--------------------
T ss_pred CCCeEEEEEE-CCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC-CeEEEEEECCC--------------------
Confidence 4899999999 99999 999999999999998875 58888888763
Q ss_pred CCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 147 NRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 147 ~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+.+
T Consensus 78 --------------~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~l~~~ 121 (123)
T 1oaz_A 78 --------------NPGTAPKYGIR------GIPTLLLF-KNGEVAATKVGALS----KGQLKEFLDAN 121 (123)
T ss_dssp --------------CTTTGGGGTCC------BSSEEEEE-ESSSEEEEEESCCC----HHHHHHHHTTT
T ss_pred --------------CHHHHHHcCCC------ccCEEEEE-ECCEEEEEEeCCCC----HHHHHHHHHHH
Confidence 13567889998 89999999 89999987766543 57777777654
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-11 Score=94.87 Aligned_cols=94 Identities=10% Similarity=0.025 Sum_probs=64.0
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHH--HHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 80 YRGKYLVFFFYPLDFTFVCPTEVLALNEKI--DEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 80 ~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~--~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
-.||+++|.|| |+||++|+...|.+.+.. .++.+ ..|+.|..|..
T Consensus 42 ~~~KpVlV~F~-A~WC~~Ck~m~p~~~~~~~~~~~~~--~~fv~V~vD~e------------------------------ 88 (151)
T 3ph9_A 42 KSKKPLMVIHH-LEDCQYSQALKKVFAQNEEIQEMAQ--NKFIMLNLMHE------------------------------ 88 (151)
T ss_dssp HHTCCEEEEEC-CTTCHHHHHHHHHHHHCHHHHHHHH--HTCEEEEESSC------------------------------
T ss_pred HcCCcEEEEEE-CCCCHhHHHHHHHHhcCHHHHHHhh--cCeEEEEecCC------------------------------
Confidence 35899999999 999999999999988642 22222 34555555520
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCC------CCCHHHHHHHHHhh
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPV------GRSVEETLRLVRAF 215 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~------~~~~~~il~~l~~l 215 (247)
.......|++. .+|+++++|++|+++....|..+. ..+.+++++.++..
T Consensus 89 ---~~~~~~~~~v~------~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~a 143 (151)
T 3ph9_A 89 ---TTDKNLSPDGQ------YVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKA 143 (151)
T ss_dssp ---CSCGGGCTTCC------CSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHH
T ss_pred ---chhhHhhcCCC------CCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHH
Confidence 00123445666 889999999999999877776222 13467777776654
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.5e-10 Score=85.41 Aligned_cols=99 Identities=19% Similarity=0.209 Sum_probs=70.8
Q ss_pred CceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCC
Q psy15453 71 NIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLD 150 (247)
Q Consensus 71 ~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (247)
+++.+...-..++.+||.|| ++||++|+...|.+.++++++++ ++.++.|+.+.
T Consensus 39 ~~~~~~~~~~~~~~vvv~f~-~~~C~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~------------------------ 92 (140)
T 1v98_A 39 DEKGFAQEVAGAPLTLVDFF-APWCGPCRLVSPILEELARDHAG-RLKVVKVNVDE------------------------ 92 (140)
T ss_dssp ----------CCCEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT------------------------
T ss_pred CHHHHHHHHHcCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCC------------------------
Confidence 33444433223334899999 99999999999999999999875 58898888764
Q ss_pred CcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 151 KLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 151 ~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+.+.
T Consensus 93 ----------~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~i~~~l 137 (140)
T 1v98_A 93 ----------HPGLAARYGVR------SVPTLVLF-RRGAPVATWVGASP----RRVLEERLRPYL 137 (140)
T ss_dssp ----------CHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCCC----HHHHHHHHHHHH
T ss_pred ----------CHHHHHHCCCC------ccCEEEEE-eCCcEEEEEeCCCC----HHHHHHHHHHHH
Confidence 13577888988 88999888 79999887766543 567777776653
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.1e-10 Score=85.36 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=61.7
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 80 YRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 80 ~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
-++++++|.|| ++||++|+...|.+.+++++|+..++.++.|+.+...
T Consensus 24 ~~~~~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~------------------------------- 71 (137)
T 2dj0_A 24 DKRVTWIVEFF-ANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYT------------------------------- 71 (137)
T ss_dssp STTSCEEEEEC-CTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCH-------------------------------
T ss_pred CCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCH-------------------------------
Confidence 35679999999 9999999999999999999997557899888876522
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
.+.+.|++.....-..+|+++++ ++|+++..+.|..+
T Consensus 72 ---~~~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~~~~G~~~ 108 (137)
T 2dj0_A 72 ---DVSTRYKVSTSPLTKQLPTLILF-QGGKEAMRRPQIDK 108 (137)
T ss_dssp ---HHHHHTTCCCCSSSSCSSEEEEE-SSSSEEEEESCBCS
T ss_pred ---HHHHHccCcccCCcCCCCEEEEE-ECCEEEEEecCcCc
Confidence 12223332100000168999988 78999988876554
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.09 E-value=7.7e-11 Score=86.42 Aligned_cols=90 Identities=16% Similarity=0.287 Sum_probs=69.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc--CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI--GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
++|+++|.|| ++||++|+...|.+.++++++++. ++.++.|..+.
T Consensus 23 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------------- 69 (120)
T 1mek_A 23 AHKYLLVEFY-APWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE-------------------------------- 69 (120)
T ss_dssp HCSEEEEEEE-CSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT--------------------------------
T ss_pred cCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCC--------------------------------
Confidence 4789999999 999999999999999999988753 45666655532
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEE--EEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVR--QITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~--~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+..+.+.|++. .+|+++++ ++|+++ ..+.| ..+.+++.+.|+.+.
T Consensus 70 --~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~~~g----~~~~~~l~~~l~~~~ 116 (120)
T 1mek_A 70 --ESDLAQQYGVR------GYPTIKFF-RNGDTASPKEYTA----GREADDIVNWLKKRT 116 (120)
T ss_dssp --CCSSHHHHTCC------SSSEEEEE-ESSCSSSCEECCC----CSSHHHHHHHHHTTS
T ss_pred --CHHHHHHCCCC------cccEEEEE-eCCCcCCcccccC----ccCHHHHHHHHHhcc
Confidence 23677889998 89999999 678765 45433 334688888887764
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-09 Score=86.96 Aligned_cols=109 Identities=6% Similarity=-0.116 Sum_probs=70.5
Q ss_pred eeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHH---HHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCC
Q psy15453 73 KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLA---LNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRL 149 (247)
Q Consensus 73 ~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~---l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 149 (247)
+.+......||+++|+|| ++||++|+...+. ..++.+.+.+ ++.++.|..|...+......
T Consensus 30 ea~~~A~~~~KpVlvdF~-A~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de~~~l~~~y~-------------- 93 (173)
T 3ira_A 30 EAFEKARKENKPVFLSIG-YSTCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREERPDIDNIYM-------------- 93 (173)
T ss_dssp HHHHHHHHHTCCEEEEEE-CTTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTTCHHHHHHHH--------------
T ss_pred HHHHHHHHhCCCEEEecc-cchhHhhccccccccCCHHHHHHHHh-cCceeeeCCcccCcHHHHHH--------------
Confidence 345555557999999999 9999999998873 2455555554 67888887765322211110
Q ss_pred CCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEec-CCC---CCCCHHHHHHHHHhh
Q psy15453 150 DKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLN-DLP---VGRSVEETLRLVRAF 215 (247)
Q Consensus 150 ~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~-~~~---~~~~~~~il~~l~~l 215 (247)
..+...+|+. .+|+++++|++|++++...+ +.. ..+...++++.+..+
T Consensus 94 ------------~~~q~~~gv~------g~Pt~v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~~ 145 (173)
T 3ira_A 94 ------------TVCQIILGRG------GWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEI 145 (173)
T ss_dssp ------------HHHHHHHSCC------CSSEEEEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHHHHH
T ss_pred ------------HHHHHHcCCC------CCcceeeECCCCCceeeeeeCCCCcCCCCCCHHHHHHHHHHH
Confidence 0122335887 88999999999999987421 111 234566777666543
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.2e-10 Score=84.84 Aligned_cols=86 Identities=17% Similarity=0.180 Sum_probs=70.8
Q ss_pred CeEEEEEEeCCCC--CCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 83 KYLVFFFYPLDFT--FVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 83 k~vvl~F~~a~~C--p~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+++||.|| |+|| ++|+...|-|.++.++|.. .+.|+-|+.|.
T Consensus 34 ~~vlVdF~-A~wCr~gpCk~iaPvleela~e~~~-~v~~~KVdvDe---------------------------------- 77 (137)
T 2qsi_A 34 KIVVLFFR-GDAVRFPEAADLAVVLPELINAFPG-RLVAAEVAAEA---------------------------------- 77 (137)
T ss_dssp SEEEEEEC-CCTTTCTTHHHHHHHHHHHHHTSTT-TEEEEEECGGG----------------------------------
T ss_pred CcEEEEEe-CCccCCCchhhHHhHHHHHHHHccC-CcEEEEEECCC----------------------------------
Confidence 49999999 9999 9999999999999999964 58888887763
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..++.+||+. .+|+++++ ++|+++....|..+ -+++.+.|+.+
T Consensus 78 ~~~la~~ygV~------siPTlilF-kdG~~v~~~vG~~~----k~~l~~~l~~~ 121 (137)
T 2qsi_A 78 ERGLMARFGVA------VCPSLAVV-QPERTLGVIAKIQD----WSSYLAQIGAM 121 (137)
T ss_dssp HHHHHHHHTCC------SSSEEEEE-ECCEEEEEEESCCC----HHHHHHHHHHH
T ss_pred CHHHHHHcCCc------cCCEEEEE-ECCEEEEEEeCCCC----HHHHHHHHHHH
Confidence 35789999999 99999999 79999999877665 34455555443
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-10 Score=87.26 Aligned_cols=90 Identities=17% Similarity=0.238 Sum_probs=72.0
Q ss_pred CCCeEEEEEEeCCC--CCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDF--TFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~--Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
.++++||.|| +.| |++|+...|.|.++.++|..+.+.|+-|+.|.
T Consensus 33 ~~~~vlVdF~-a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe-------------------------------- 79 (140)
T 2qgv_A 33 QAPDGVVLLS-SDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQ-------------------------------- 79 (140)
T ss_dssp TCSSEEEEEC-CCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHH--------------------------------
T ss_pred CCCCEEEEEe-CCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCC--------------------------------
Confidence 4568888888 998 99999999999999999975337887776652
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+..++.+||+. .+|+++++ ++|+++....|..+ -+++.+.|+++.
T Consensus 80 --~~~lA~~ygV~------sIPTlilF-k~G~~v~~~~G~~~----k~~l~~~i~~~l 124 (140)
T 2qgv_A 80 --SEAIGDRFGAF------RFPATLVF-TGGNYRGVLNGIHP----WAELINLMRGLV 124 (140)
T ss_dssp --HHHHHHHHTCC------SSSEEEEE-ETTEEEEEEESCCC----HHHHHHHHHHHH
T ss_pred --CHHHHHHcCCc------cCCEEEEE-ECCEEEEEEecCCC----HHHHHHHHHHHh
Confidence 35789999999 99999998 89999999877654 456666666544
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.04 E-value=6.6e-10 Score=91.72 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=73.9
Q ss_pred eeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcC--cEEEEEeCCChHhHHHHHHHhhccccccccCCCC
Q psy15453 73 KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG--AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLD 150 (247)
Q Consensus 73 ~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~--~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (247)
+.+.....+||+++|.|| ++||++|+..+|.+.++++++++.+ +.++.|+.+.
T Consensus 23 ~~~~~~~~~~~~v~v~F~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~------------------------ 77 (241)
T 3idv_A 23 ANFDNFVADKDTVLLEFY-APWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS------------------------ 77 (241)
T ss_dssp TTHHHHHTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTT------------------------
T ss_pred cCHHHHHhcCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccC------------------------
Confidence 344333336899999999 9999999999999999999998655 7777776653
Q ss_pred CcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 151 KLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 151 ~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
+..+.+.|++. .+|++++++ +|+++. +.| ..+.+++.+.++....
T Consensus 78 ----------~~~l~~~~~v~------~~Pt~~~~~-~g~~~~-~~g----~~~~~~l~~~i~~~~~ 122 (241)
T 3idv_A 78 ----------ASVLASRFDVS------GYPTIKILK-KGQAVD-YEG----SRTQEEIVAKVREVSQ 122 (241)
T ss_dssp ----------CHHHHHHTTCC------SSSEEEEEE-TTEEEE-CCS----CSCHHHHHHHHHHHHS
T ss_pred ----------CHHHHHhcCCC------cCCEEEEEc-CCCccc-ccC----cccHHHHHHHHhhccC
Confidence 24688899999 899999996 566653 323 3346778888776643
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=90.96 Aligned_cols=96 Identities=6% Similarity=0.056 Sum_probs=72.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh--cCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK--IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~--~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
.+++++|.|| ++||++|+...|.+.++++++++ .++.++.|+.+.
T Consensus 29 ~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~-------------------------------- 75 (244)
T 3q6o_A 29 SRSAWAVEFF-ASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAE-------------------------------- 75 (244)
T ss_dssp CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTS--------------------------------
T ss_pred CCCeEEEEEE-CCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCc--------------------------------
Confidence 3689999999 99999999999999999999985 468999988753
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEE-EEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVR-QITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~-~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
|.+..+.+.|++. .+|+++++++.+++- .... .. .+.+.+++.+.|.....
T Consensus 76 ~~~~~l~~~~~v~------~~Pt~~~~~~g~~~~~g~~~-~~-~g~~~~~l~~~i~~~l~ 127 (244)
T 3q6o_A 76 ETNSAVCRDFNIP------GFPTVRFFXAFTXNGSGAVF-PV-AGADVQTLRERLIDALE 127 (244)
T ss_dssp TTTHHHHHHTTCC------SSSEEEEECTTCCSSSCEEC-CC-TTCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCC------ccCEEEEEeCCCcCCCCeeE-ec-CCCCHHHHHHHHHHHHH
Confidence 1236788999999 899999999743321 1110 11 22467888888877654
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.3e-09 Score=99.09 Aligned_cols=93 Identities=5% Similarity=0.038 Sum_probs=75.7
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh--cCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK--IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~--~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
||+++|.|| |+||++|+.++|.+.++++++++ .++.|+.|+.+. |
T Consensus 30 ~k~vlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~--------------------------------d 76 (519)
T 3t58_A 30 SSAWAVEFF-ASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAE--------------------------------E 76 (519)
T ss_dssp SSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTS--------------------------------G
T ss_pred CCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCc--------------------------------c
Confidence 689999999 99999999999999999999985 368899998864 1
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcC---CCcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDR---EGIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~---~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
.+..+.+.|++. .+|+++++++ +|+++....+. .+.+++.+.|+.+..
T Consensus 77 ~~~~l~~~~~V~------~~PTl~~f~~g~~~G~~~~~~~g~----~~~~~L~~~l~~~l~ 127 (519)
T 3t58_A 77 TNSAVCREFNIA------GFPTVRFFQAFTKNGSGATLPGAG----ANVQTLRMRLIDALE 127 (519)
T ss_dssp GGHHHHHHTTCC------SBSEEEEECTTCCSCCCEEECCSS----CCHHHHHHHHHHHHT
T ss_pred ccHHHHHHcCCc------ccCEEEEEcCcccCCCceeEecCC----CCHHHHHHHHHHHHh
Confidence 235788999999 8999999998 77766655443 457888888877653
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-09 Score=75.58 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=61.6
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCch
Q psy15453 84 YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHE 163 (247)
Q Consensus 84 ~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~ 163 (247)
++++.|| ++|||+|+...|.++++++++++ ++.++.|+.|. +..
T Consensus 3 ~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------------~~~ 46 (85)
T 1nho_A 3 VNIEVFT-SPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMV----------------------------------DRE 46 (85)
T ss_dssp CCEEEES-CSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTT----------------------------------CGG
T ss_pred EEEEEEE-CCCCcchHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------------------CHH
Confidence 4688999 99999999999999999999864 68888887753 135
Q ss_pred HHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 164 ISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 164 ~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+.+.||+. .+|++++ +|++ .+.|.. +.+++.+.|+.+
T Consensus 47 ~~~~~~v~------~~Pt~~~---~G~~--~~~G~~----~~~~l~~~l~~~ 83 (85)
T 1nho_A 47 KAIEYGLM------AVPAIAI---NGVV--RFVGAP----SREELFEAINDE 83 (85)
T ss_dssp GGGGTCSS------CSSEEEE---TTTE--EEECSS----CCHHHHHHHHHH
T ss_pred HHHhCCce------eeCEEEE---CCEE--EEccCC----CHHHHHHHHHHH
Confidence 67889998 8898888 7888 333532 236666666543
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.6e-09 Score=86.60 Aligned_cols=88 Identities=17% Similarity=0.043 Sum_probs=68.1
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh---cCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK---IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~---~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
+++++|.|| ++||++|+...|.+.++++++++ .++.++.|+.+.
T Consensus 134 ~~~~~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~-------------------------------- 180 (226)
T 1a8l_A 134 QDVRILVFV-TPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE-------------------------------- 180 (226)
T ss_dssp SCEEEEEEE-CSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG--------------------------------
T ss_pred CCcEEEEEe-CCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEccc--------------------------------
Confidence 344599999 99999999999999999999974 368888876642
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+.+
T Consensus 181 --~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~l~~~ 224 (226)
T 1a8l_A 181 --YPEWADQYNVM------AVPKIVIQ-VNGEDRVEFEGAYP----EKMFLEKLLSA 224 (226)
T ss_dssp --CHHHHHHTTCC------SSCEEEEE-ETTEEEEEEESCCC----HHHHHHHHHHH
T ss_pred --CHHHHHhCCCc------ccCeEEEE-eCCceeEEEcCCCC----HHHHHHHHHHh
Confidence 24577889998 88997766 68998877766543 46677777654
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-09 Score=75.68 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=61.5
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCc
Q psy15453 83 KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTH 162 (247)
Q Consensus 83 k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~ 162 (247)
.++++.|| ++|||+|+...|.++++++++++ ++.++.|+.|. +.
T Consensus 3 ~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------------~~ 46 (85)
T 1fo5_A 3 KVKIELFT-SPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVME----------------------------------NP 46 (85)
T ss_dssp CEEEEEEE-CCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEESSS----------------------------------SC
T ss_pred ceEEEEEe-CCCCCchHHHHHHHHHHHHHcCC-ceEEEEEECCC----------------------------------CH
Confidence 57899999 99999999999999999988863 68898888763 12
Q ss_pred hHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 163 EISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 163 ~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
.+.+.||+. .+|++++ +|++ .+.|.. +.+++.+.|+.
T Consensus 47 ~~~~~~~v~------~~Pt~~~---~G~~--~~~G~~----~~~~l~~~l~~ 83 (85)
T 1fo5_A 47 QKAMEYGIM------AVPTIVI---NGDV--EFIGAP----TKEALVEAIKK 83 (85)
T ss_dssp CTTTSTTTC------CSSEEEE---TTEE--ECCSSS----SSHHHHHHHHH
T ss_pred HHHHHCCCc------ccCEEEE---CCEE--eeecCC----CHHHHHHHHHH
Confidence 456778888 8898888 7887 333432 24666666654
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=91.39 Aligned_cols=92 Identities=10% Similarity=0.060 Sum_probs=71.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+|+++||.|| ++||++|+...|.|.+++.+|. ++.|+.|+.+. .
T Consensus 132 ~~k~VvV~Fy-a~wC~~Ck~l~p~l~~La~~~~--~v~f~kVd~d~--------~------------------------- 175 (245)
T 1a0r_P 132 KITTIVVHIY-EDGIKGCDALNSSLICLAAEYP--MVKFCKIKASN--------T------------------------- 175 (245)
T ss_dssp TTCEEEEEEE-CTTSTTHHHHHHHHHHHHHHCT--TSEEEEEEHHH--------H-------------------------
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEeCCc--------H-------------------------
Confidence 4889999999 9999999999999999999986 68998887631 1
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC---CCCCHHHHHHHHHhhhc
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP---VGRSVEETLRLVRAFQY 217 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~---~~~~~~~il~~l~~l~~ 217 (247)
.+...|++. .+|+++++. +|+++..+.|... .....+++...|...-.
T Consensus 176 --~l~~~~~I~------~~PTll~~~-~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g~ 226 (245)
T 1a0r_P 176 --GAGDRFSSD------VLPTLLVYK-GGELLSNFISVTEQLAEEFFTGDVESFLNEYGL 226 (245)
T ss_dssp --CCTTSSCTT------TCSEEEEEE-TTEEEEEETTGGGGSCTTCCHHHHHHHHHTTTC
T ss_pred --HHHHHCCCC------CCCEEEEEE-CCEEEEEEeCCcccccccccHHHHHHHHHHcCC
Confidence 133567887 889988885 8999988877543 22456777777776543
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=98.95 E-value=7.8e-10 Score=82.44 Aligned_cols=79 Identities=14% Similarity=0.240 Sum_probs=63.9
Q ss_pred CCCCCeEEEEEEeCC-------CCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCC
Q psy15453 79 DYRGKYLVFFFYPLD-------FTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDK 151 (247)
Q Consensus 79 ~~~gk~vvl~F~~a~-------~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (247)
+..||+++|.|| ++ ||++|+...|.+.++++++++ ++.++.|+.+... .|
T Consensus 21 ~~~~~~v~v~F~-a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~---~~------------------ 77 (123)
T 1wou_A 21 QHNGKTIFAYFT-GSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKP---YW------------------ 77 (123)
T ss_dssp TTTTSEEEEEEE-CCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHH---HH------------------
T ss_pred HhCCCEEEEEEE-ccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECCCch---hh------------------
Confidence 345899999999 99 999999999999999988864 7999999987521 11
Q ss_pred cceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEE
Q psy15453 152 LKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVR 192 (247)
Q Consensus 152 ~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~ 192 (247)
.|....+.+.|++. .+|+++++++.+++.
T Consensus 78 ------~d~~~~~~~~~~i~------~~Pt~~~~~~~~~~~ 106 (123)
T 1wou_A 78 ------KDPNNDFRKNLKVT------AVPTLLKYGTPQKLV 106 (123)
T ss_dssp ------HCTTCHHHHHHCCC------SSSEEEETTSSCEEE
T ss_pred ------hchhHHHHHHCCCC------eeCEEEEEcCCceEe
Confidence 13456788999999 899999998855544
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.8e-09 Score=86.03 Aligned_cols=89 Identities=20% Similarity=0.168 Sum_probs=69.1
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh---cCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCccee
Q psy15453 79 DYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK---IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIP 155 (247)
Q Consensus 79 ~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~---~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (247)
++.|+++++.|| ++|||+|+...|.+++++.++++ .++.+..|..+.
T Consensus 135 ~~~~~~~vv~F~-a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~----------------------------- 184 (243)
T 2hls_A 135 SLKGRVHIETII-TPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYE----------------------------- 184 (243)
T ss_dssp HCCSCEEEEEEE-CSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTT-----------------------------
T ss_pred HcCCCcEEEEEE-CCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECcc-----------------------------
Confidence 466888899999 99999999999999999999852 467777776542
Q ss_pred EEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 156 LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 156 ~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
+..+.+.|++. .+|++++ +|+++ +.|.. +.+++++.|+....
T Consensus 185 -----~~~~~~~~~V~------~vPt~~i---~G~~~--~~G~~----~~~~l~~~l~~~~~ 226 (243)
T 2hls_A 185 -----NPDIADKYGVM------SVPSIAI---NGYLV--FVGVP----YEEDFLDYVKSAAE 226 (243)
T ss_dssp -----CHHHHHHTTCC------SSSEEEE---TTEEE--EESCC----CHHHHHHHHHHHHT
T ss_pred -----CHHHHHHcCCe------eeCeEEE---CCEEE--EeCCC----CHHHHHHHHHHHhh
Confidence 24677889998 8999888 78876 33433 36888888877654
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-10 Score=85.80 Aligned_cols=88 Identities=18% Similarity=0.287 Sum_probs=67.1
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 80 YRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 80 ~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
..||+++|.|| ++||++|+...|.+.++.++++ ++.++.|+.|.
T Consensus 34 ~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~--------------------------------- 77 (130)
T 1wmj_A 34 EAGKVVIIDFT-ASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVDE--------------------------------- 77 (130)
T ss_dssp TTTCBCBEECC-SSSCSCSSSSHHHHHHHHHHCT--TBCCEECCTTT---------------------------------
T ss_pred hcCCEEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CCEEEEEeccc---------------------------------
Confidence 46899999999 9999999999999999998886 68888876652
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+..+.+.|++. .+|+++++ ++|+++..+.| .+ .+++.+.|+.+.
T Consensus 78 -~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g-~~----~~~l~~~l~~~~ 121 (130)
T 1wmj_A 78 -LKEVAEKYNVE------AMPTFLFI-KDGAEADKVVG-AR----KDDLQNTIVKHV 121 (130)
T ss_dssp -SGGGHHHHTCC------SSCCCCBC-TTTTCCBCCCT-TC----TTTHHHHHHHHT
T ss_pred -hHHHHHHcCCC------ccceEEEE-eCCeEEEEEeC-CC----HHHHHHHHHHHH
Confidence 24677889998 88987666 89998876655 22 234555555443
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-10 Score=83.40 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=60.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++|||+|+...|.++++.+++++ ++.++.|+.|.
T Consensus 18 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~---------------------------------- 61 (106)
T 2yj7_A 18 SDKPVLVDFW-APWCGPCRMIAPIIEELAKEYEG-KVKVVKVNVDE---------------------------------- 61 (106)
Confidence 4789999999 99999999999999999998874 57777766542
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
+..+.+.|++. .+|+++++ ++|+++..+.|..
T Consensus 62 ~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~~ 93 (106)
T 2yj7_A 62 NPNTAAQYGIR------SIPTLLLF-KNGQVVDRLVGAQ 93 (106)
Confidence 13456778888 88999999 7999887765544
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.9e-09 Score=89.30 Aligned_cols=96 Identities=10% Similarity=0.103 Sum_probs=71.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+++++|.|| |+||++|+..+|.+.++++++++ .+.++.|+.|.. .
T Consensus 34 ~~~~vlV~F~-A~wC~~C~~~~p~~~~la~~~~~-~~~~~~v~~d~~--------------------------------~ 79 (298)
T 3ed3_A 34 TNYTSLVEFY-APWCGHCKKLSSTFRKAAKRLDG-VVQVAAVNCDLN--------------------------------K 79 (298)
T ss_dssp SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTST--------------------------------T
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-CcEEEEEEccCc--------------------------------c
Confidence 3789999999 99999999999999999999975 489999988741 2
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEec-------------CCCCCCCHHHHHHHHHhhhc
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLN-------------DLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~-------------~~~~~~~~~~il~~l~~l~~ 217 (247)
+..+.+.|++. .+|+++++++ |+++....| ......+.+.+++.+.....
T Consensus 80 ~~~l~~~~~I~------~~Pt~~~~~~-g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~ 142 (298)
T 3ed3_A 80 NKALCAKYDVN------GFPTLMVFRP-PKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIR 142 (298)
T ss_dssp THHHHHHTTCC------BSSEEEEEEC-CCC-------------CCCEEEECCSCCSHHHHHHHHHTTCC
T ss_pred CHHHHHhCCCC------ccceEEEEEC-CceeecccccccccccccccceeecCCcCHHHHHHHHHHhcc
Confidence 35788999999 8999999976 443111110 11234568999999876653
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.2e-09 Score=77.42 Aligned_cols=86 Identities=15% Similarity=0.205 Sum_probs=68.2
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
++++||.|| ++||++|+...|.|.++.++|. ++.|+-|+.|. .
T Consensus 23 ~~~vvv~F~-a~wc~~C~~~~p~l~~la~~~~--~v~f~kvd~d~-------------------------~--------- 65 (118)
T 3evi_A 23 DVWVIIHLY-RSSIPMCLLVNQHLSLLARKFP--ETKFVKAIVNS-------------------------C--------- 65 (118)
T ss_dssp TCEEEEEEE-CTTSHHHHHHHHHHHHHHHHCT--TSEEEEEEGGG-------------------------T---------
T ss_pred CCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEEhHH-------------------------h---------
Confidence 459999999 9999999999999999999986 68998887753 0
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCC---CCCHHHHHHHHHh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPV---GRSVEETLRLVRA 214 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~---~~~~~~il~~l~~ 214 (247)
...|++. .+|+++++ ++|+++....|..+. ....+++-..|..
T Consensus 66 ---~~~~~v~------~~PT~~~f-k~G~~v~~~~G~~~~gg~~~~~~~le~~L~~ 111 (118)
T 3evi_A 66 ---IQHYHDN------CLPTIFVY-KNGQIEAKFIGIIECGGINLKLEELEWKLAE 111 (118)
T ss_dssp ---STTCCGG------GCSEEEEE-ETTEEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred ---HHHCCCC------CCCEEEEE-ECCEEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence 2567788 89998888 789999998876643 3455666666654
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-09 Score=83.63 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=60.5
Q ss_pred CCeEEEEEEeCCC--CCCcHHHHHHHHHHHHHHHhcCcE--EEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 82 GKYLVFFFYPLDF--TFVCPTEVLALNEKIDEFHKIGAE--VVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 82 gk~vvl~F~~a~~--Cp~C~~~~~~l~~l~~~~~~~~~~--vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
++.+||.|| +.| |++|+...|.|.+++++| + ++. ++.|+.|.
T Consensus 34 ~~~~vv~f~-~~~~~C~~C~~l~P~l~~la~~~-~-~v~~~~~~Vd~d~------------------------------- 79 (142)
T 2es7_A 34 VGDGVILLS-SDPRRTPEVSDNPVMIAELLREF-P-QFDWQVAVADLEQ------------------------------- 79 (142)
T ss_dssp CCSEEEEEC-CCSCC----CCHHHHHHHHHHTC-T-TSCCEEEEECHHH-------------------------------
T ss_pred CCCEEEEEE-CCCCCCccHHHHHHHHHHHHHHh-c-ccceeEEEEECCC-------------------------------
Confidence 345677787 777 999999999999999998 3 677 88886642
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+..++++|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+.+.
T Consensus 80 ---~~~la~~~~V~------~iPT~~~f-k~G~~v~~~~G~~~----~~~l~~~i~~~l 124 (142)
T 2es7_A 80 ---SEAIGDRFNVR------RFPATLVF-TDGKLRGALSGIHP----WAELLTLMRSIV 124 (142)
T ss_dssp ---HHHHHHTTTCC------SSSEEEEE-SCC----CEESCCC----HHHHHHHHHHHH
T ss_pred ---CHHHHHhcCCC------cCCeEEEE-eCCEEEEEEeCCCC----HHHHHHHHHHHh
Confidence 13677899999 89999999 89999888766543 467777776654
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-10 Score=84.31 Aligned_cols=88 Identities=13% Similarity=0.043 Sum_probs=60.8
Q ss_pred eeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCc
Q psy15453 73 KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKL 152 (247)
Q Consensus 73 ~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (247)
+.++|++++||++||.|| |+|||+|+...|.+.++.++++ .+-+..|. .
T Consensus 3 ~~~~la~~~~k~~vV~F~-A~WC~~C~~~~p~~~~~a~~~~-----~v~~~~~~-------------------------~ 51 (106)
T 3kp8_A 3 LAVGLAAHLRQIGGTMYG-AYWCPHCQDQKELFGAAFDQVP-----YVECSPNG-------------------------P 51 (106)
T ss_dssp HHHHHHHHHHHHTCEEEE-CTTCHHHHHHHHHHGGGGGGSC-----EEESCTTC-------------------------T
T ss_pred HhhHHHHhcCCCEEEEEE-CCCCHHHHHHHHHHHHHHHhCC-----EEEEeccc-------------------------c
Confidence 456677788999999999 9999999999999998875553 22222221 0
Q ss_pred ceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 153 KIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 153 ~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
.+.+..+.+.|++. .+|++++ +|+. +.|.. +.+++.+.+
T Consensus 52 -----~~~~~~l~~~~~V~------~~PT~~i---~G~~---~~G~~----~~~~l~~~~ 90 (106)
T 3kp8_A 52 -----GTPQAQECTEAGIT------SYPTWII---NGRT---YTGVR----SLEALAVAS 90 (106)
T ss_dssp -----TSCCCHHHHHTTCC------SSSEEEE---TTEE---EESCC----CHHHHHHHH
T ss_pred -----cchhHHHHHHcCCe------EeCEEEE---CCEE---ecCCC----CHHHHHHHh
Confidence 02346899999999 8998666 7764 33433 345555544
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-08 Score=74.75 Aligned_cols=73 Identities=14% Similarity=0.061 Sum_probs=60.3
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++++|.|+ |+|||+|+...|.+.++.++ .++.++-|.+|.... -.
T Consensus 24 ~~~vvi~kh-atwCgpc~~~~~~~e~~~~~---~~v~~~~vdVde~r~------------------------------~S 69 (112)
T 3iv4_A 24 NKYVFVLKH-SETCPISANAYDQFNKFLYE---RDMDGYYLIVQQERD------------------------------LS 69 (112)
T ss_dssp CSEEEEEEE-CTTCHHHHHHHHHHHHHHHH---HTCCEEEEEGGGGHH------------------------------HH
T ss_pred CCCEEEEEE-CCcCHhHHHHHHHHHHHhcc---CCceEEEEEeecCch------------------------------hh
Confidence 789999999 99999999999999999874 378999988764110 11
Q ss_pred chHHHHhCCcccCCCcc-ceeEEEEcCCCcEEEEE
Q psy15453 162 HEISRDYGVYLEDKGHS-LRGLFIIDREGIVRQIT 195 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~-~p~~~lId~~G~v~~~~ 195 (247)
..++..||+. + .|+++++ ++|++++..
T Consensus 70 n~IA~~~~V~------h~sPq~il~-k~G~~v~~~ 97 (112)
T 3iv4_A 70 DYIAKKTNVK------HESPQAFYF-VNGEMVWNR 97 (112)
T ss_dssp HHHHHHHTCC------CCSSEEEEE-ETTEEEEEE
T ss_pred HHHHHHhCCc------cCCCeEEEE-ECCEEEEEe
Confidence 4689999999 6 7999999 799999886
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.7e-09 Score=97.27 Aligned_cols=91 Identities=11% Similarity=0.181 Sum_probs=70.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc-CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI-GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~-~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
.||+++|.|| ++||++|+.++|.+.++++++++. ++.++.|+.+.
T Consensus 369 ~~k~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~--------------------------------- 414 (481)
T 3f8u_A 369 ENKDVLIEFY-APWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA--------------------------------- 414 (481)
T ss_dssp TTCEEEEEEE-CTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTS---------------------------------
T ss_pred CCCcEEEEEe-cCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCc---------------------------------
Confidence 3899999999 999999999999999999999854 57777776643
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcE-EEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIV-RQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v-~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
..+.+.|++. .+|++++++++|++ ...+.| ..+.+++++.|+....
T Consensus 415 --~~~~~~~~v~------~~Pt~~~~~~~~~~~~~~~~G----~~~~~~l~~~l~~~~~ 461 (481)
T 3f8u_A 415 --NDVPSPYEVR------GFPTIYFSPANKKLNPKKYEG----GRELSDFISYLQREAT 461 (481)
T ss_dssp --SCCCTTCCCC------SSSEEEEECTTCTTSCEECCS----CCSHHHHHHHHHHHCS
T ss_pred --hhhHhhCCCc------ccCEEEEEeCCCeEeeeEeCC----CCCHHHHHHHHHHhcC
Confidence 1233567888 88999999988874 333323 2458899999987653
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.6e-08 Score=82.05 Aligned_cols=89 Identities=12% Similarity=0.157 Sum_probs=70.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcC--cEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG--AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~--~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
.+++++|.|| ++||++|+...|.+.++++++++++ +.++.|+.+.
T Consensus 146 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~-------------------------------- 192 (241)
T 3idv_A 146 DADIILVEFY-APWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA-------------------------------- 192 (241)
T ss_dssp HCSEEEEEEE-CTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTT--------------------------------
T ss_pred cCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCC--------------------------------
Confidence 4689999999 9999999999999999999998543 7777776653
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+..+.+.|++. .+|++++++ +|+.+. +.| ..+.+++++.|+...
T Consensus 193 --~~~l~~~~~v~------~~Pt~~~~~-~g~~~~-~~g----~~~~~~l~~~l~~~~ 236 (241)
T 3idv_A 193 --ETDLAKRFDVS------GYPTLKIFR-KGRPYD-YNG----PREKYGIVDYMIEQS 236 (241)
T ss_dssp --CHHHHHHTTCC------SSSEEEEEE-TTEEEE-CCS----CCSHHHHHHHHHHHT
T ss_pred --CHHHHHHcCCc------ccCEEEEEE-CCeEEE-ecC----CCCHHHHHHHHHhhh
Confidence 24688899998 889999886 577665 323 345788888887664
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=98.81 E-value=5.7e-09 Score=85.83 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=68.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+|+++||.|| ++||++|+...|.+.+++++|. ++.|+.|+.+ .
T Consensus 119 ~~k~vvV~F~-a~wC~~C~~l~p~l~~la~~~~--~v~f~~vd~~---------~------------------------- 161 (217)
T 2trc_P 119 KVTTIVVNIY-EDGVRGCDALNSSLECLAAEYP--MVKFCKIRAS---------N------------------------- 161 (217)
T ss_dssp TTCEEEEEEE-CTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHH---------H-------------------------
T ss_pred CCcEEEEEEE-CCCCccHHHHHHHHHHHHHHCC--CeEEEEEECC---------c-------------------------
Confidence 4689999999 9999999999999999999885 7888888753 0
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCC---CCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPV---GRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~---~~~~~~il~~l~~l 215 (247)
..+...|++. .+|+++++ ++|+++..+.|..+. .-..+++.+.|...
T Consensus 162 -~~l~~~~~i~------~~PTl~~~-~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~ 211 (217)
T 2trc_P 162 -TGAGDRFSSD------VLPTLLVY-KGGELISNFISVAEQFAEDFFAADVESFLNEY 211 (217)
T ss_dssp -HTCSTTSCGG------GCSEEEEE-ETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred -HHHHHHCCCC------CCCEEEEE-ECCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence 1233567887 88999998 489998887665432 33357777777654
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=3.7e-08 Score=66.53 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=54.1
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchH
Q psy15453 85 LVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI 164 (247)
Q Consensus 85 vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~ 164 (247)
+.|.|| ++||++|+...|.+.++.++++. ++.++.|+ +.++
T Consensus 2 ~~v~f~-a~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v~-------------------------------------~~~~ 42 (77)
T 1ilo_A 2 MKIQIY-GTGCANCQMLEKNAREAVKELGI-DAEFEKIK-------------------------------------EMDQ 42 (77)
T ss_dssp EEEEEE-CSSSSTTHHHHHHHHHHHHHTTC-CEEEEEEC-------------------------------------SHHH
T ss_pred cEEEEE-cCCChhHHHHHHHHHHHHHHcCC-ceEEEEec-------------------------------------CHHH
Confidence 358899 99999999999999999988753 46666553 2356
Q ss_pred HHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHH
Q psy15453 165 SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRL 211 (247)
Q Consensus 165 ~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~ 211 (247)
.+.||+. .+|++++ +|+++.. |.. ++.+++.+.
T Consensus 43 ~~~~~v~------~~Pt~~~---~G~~~~~--G~~---~~~~~l~~~ 75 (77)
T 1ilo_A 43 ILEAGLT------ALPGLAV---DGELKIM--GRV---ASKEEIKKI 75 (77)
T ss_dssp HHHHTCS------SSSCEEE---TTEEEEC--SSC---CCHHHHHHH
T ss_pred HHHCCCC------cCCEEEE---CCEEEEc--CCC---CCHHHHHHH
Confidence 7788998 8998888 7888754 332 234555544
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-08 Score=89.28 Aligned_cols=88 Identities=7% Similarity=0.075 Sum_probs=69.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHH-------HHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcc
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLA-------LNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLK 153 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~-------l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (247)
.+++++|.|| |+||+ |+..+|. +.++++++++.++.++.|+.+.
T Consensus 27 ~~~~~lV~F~-a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~--------------------------- 77 (350)
T 1sji_A 27 KYDVLCLYYH-ESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK--------------------------- 77 (350)
T ss_dssp TCSEEEEEEE-CCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTT---------------------------
T ss_pred hCCeEEEEEE-CCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCC---------------------------
Confidence 4689999999 99999 9988888 7888888876678888888764
Q ss_pred eeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 154 IPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 154 ~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+..+++.|++. .+|+++++ ++|++. .+.|. .+.+++.+.|+...
T Consensus 78 -------~~~l~~~~~v~------~~Pt~~~~-~~g~~~-~~~G~----~~~~~l~~~i~~~~ 121 (350)
T 1sji_A 78 -------EAKLAKKLGFD------EEGSLYVL-KGDRTI-EFDGE----FAADVLVEFLLDLI 121 (350)
T ss_dssp -------THHHHHHHTCC------STTEEEEE-ETTEEE-EECSC----CCHHHHHHHHHTTS
T ss_pred -------CHHHHHhcCCC------ccceEEEE-ECCcEE-EecCC----CCHHHHHHHHHHhc
Confidence 24688899999 89999999 678844 44343 34788888887654
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.2e-08 Score=86.43 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=71.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh-----cCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCccee
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK-----IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIP 155 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~-----~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (247)
.+++++|.|| ++||++|+...|.+.++++++++ .++.++.|+.+.
T Consensus 21 ~~~~vlV~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~----------------------------- 70 (382)
T 2r2j_A 21 NADVALVNFY-ADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQ----------------------------- 70 (382)
T ss_dssp HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTT-----------------------------
T ss_pred cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCc-----------------------------
Confidence 4789999999 99999999999999999999963 247787777653
Q ss_pred EEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEE-EecCCCCCCCHHHHHHHHHhhhc
Q psy15453 156 LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQI-TLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 156 ~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~-~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
+..+.+.|++. .+|+++++ ++|+++.. +.| ..+.+++.+.|+....
T Consensus 71 -----~~~l~~~~~v~------~~Pt~~~f-~~G~~~~~~~~G----~~~~~~l~~~i~~~~~ 117 (382)
T 2r2j_A 71 -----HSDIAQRYRIS------KYPTLKLF-RNGMMMKREYRG----QRSVKALADYIRQQKS 117 (382)
T ss_dssp -----CHHHHHHTTCC------EESEEEEE-ETTEEEEEECCS----CCSHHHHHHHHHHHHS
T ss_pred -----cHHHHHhcCCC------cCCEEEEE-eCCcEeeeeecC----cchHHHHHHHHHHhcc
Confidence 25788899999 89998877 57888764 434 3457888888876653
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-07 Score=73.52 Aligned_cols=92 Identities=16% Similarity=0.066 Sum_probs=67.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.||+++|+|+ +.||+.|+..-... .++.+.+.+ ++.++-+..+.++
T Consensus 41 ~~K~vlvd~~-a~wC~~C~~me~~vf~d~~V~~~l~~-~fv~v~~d~~~~~----------------------------- 89 (153)
T 2dlx_A 41 QNKWLMINIQ-NVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHDSEE----------------------------- 89 (153)
T ss_dssp HTCEEEEEEE-CSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESSSHH-----------------------------
T ss_pred cCCeEEEEEE-CCCCHhHHHHHHHhcCCHHHHHHHHc-CeEEEEEecCCHh-----------------------------
Confidence 4899999999 99999999886544 334444433 7888887776421
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCC-CcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDRE-GIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~-G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
+..+.+.|++. ..|+++++|++ |+.+..+ +. .+.++.++.|+.+..
T Consensus 90 ---~~~l~~~y~v~------~~P~~~fld~~~G~~l~~~-~g----~~~~~fl~~L~~~l~ 136 (153)
T 2dlx_A 90 ---GQRYIQFYKLG------DFPYVSILDPRTGQKLVEW-HQ----LDVSSFLDQVTGFLG 136 (153)
T ss_dssp ---HHHHHHHHTCC------SSSEEEEECTTTCCCCEEE-SS----CCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHcCCC------CCCEEEEEeCCCCcEeeec-CC----CCHHHHHHHHHHHHH
Confidence 13456788888 88999999998 8666654 22 467889888877654
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=98.67 E-value=6.8e-08 Score=87.99 Aligned_cols=89 Identities=12% Similarity=0.147 Sum_probs=71.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
|++++|.|| ++||++|+...|.+.++++++++. +.++.|+.+. +
T Consensus 21 ~~~~lv~F~-a~wC~~C~~~~p~~~~~a~~~~~~-v~~~~vd~~~----------------------------------~ 64 (481)
T 3f8u_A 21 AGLMLVEFF-APWCGHAKRLAPEYEAAATRLKGI-VPLAKVDCTA----------------------------------N 64 (481)
T ss_dssp SSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CCEEEEETTT----------------------------------C
T ss_pred CCeEEEEEE-CCCCHHHHHhHHHHHHHHHHhcCc-eEEEEEECCC----------------------------------C
Confidence 489999999 999999999999999999999854 8888887763 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
..+.+.||+. .+|+++++ ++|+++..+.|. .+.+++.+.++....
T Consensus 65 ~~l~~~~~v~------~~Ptl~~~-~~g~~~~~~~G~----~~~~~l~~~~~~~~~ 109 (481)
T 3f8u_A 65 TNTCNKYGVS------GYPTLKIF-RDGEEAGAYDGP----RTADGIVSHLKKQAG 109 (481)
T ss_dssp HHHHHHTTCC------EESEEEEE-ETTEEEEECCSC----SSHHHHHHHHHHHTS
T ss_pred HHHHHhcCCC------CCCEEEEE-eCCceeeeecCc----cCHHHHHHHHHhhcc
Confidence 4678899998 89988888 688776665443 447888888876543
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=98.67 E-value=7e-08 Score=88.51 Aligned_cols=90 Identities=8% Similarity=0.106 Sum_probs=72.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+++++|.|| ++||++|+...|.+.+++++++..++.++.|+.+.
T Consensus 30 ~~~~~lv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~---------------------------------- 74 (504)
T 2b5e_A 30 SHDLVLAEFF-APWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE---------------------------------- 74 (504)
T ss_dssp TCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT----------------------------------
T ss_pred cCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCC----------------------------------
Confidence 4789999999 99999999999999999999986679999988753
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcE--EEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIV--RQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v--~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+..+.+.|++. .+|+++++. +|++ ...+.| ..+.+.+.+.|+...
T Consensus 75 ~~~l~~~~~v~------~~Pt~~~~~-~g~~~~~~~~~G----~~~~~~l~~~l~~~~ 121 (504)
T 2b5e_A 75 NQDLCMEHNIP------GFPSLKIFK-NSDVNNSIDYEG----PRTAEAIVQFMIKQS 121 (504)
T ss_dssp CHHHHHHTTCC------SSSEEEEEE-TTCTTCEEECCS----CCSHHHHHHHHHHHT
T ss_pred CHHHHHhcCCC------cCCEEEEEe-CCccccceeecC----CCCHHHHHHHHHHhc
Confidence 24688999999 899999996 5664 444434 245788888887654
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.8e-08 Score=74.65 Aligned_cols=92 Identities=7% Similarity=-0.023 Sum_probs=62.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHH-hcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH-KIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~-~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
+.+.+||.|| +.||++|+..-+.+...++... .+.+.++-|..+..
T Consensus 17 ~~~~~LV~F~-A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~-------------------------------- 63 (116)
T 3dml_A 17 KAELRLLMFE-QPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDP-------------------------------- 63 (116)
T ss_dssp --CEEEEEEE-CTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSC--------------------------------
T ss_pred cCCCEEEEEE-CCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCC--------------------------------
Confidence 3468899999 9999999998765544432211 11356666666541
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
....++..|++. .+|++++++ +|+.+....|..+ .+++.+.|+.+.
T Consensus 64 ~~~~la~~~~V~------g~PT~i~f~-~G~ev~Ri~G~~~----~~~f~~~L~~~l 109 (116)
T 3dml_A 64 LPPGLELARPVT------FTPTFVLMA-GDVESGRLEGYPG----EDFFWPMLARLI 109 (116)
T ss_dssp CCTTCBCSSCCC------SSSEEEEEE-TTEEEEEEECCCC----HHHHHHHHHHHH
T ss_pred CchhHHHHCCCC------CCCEEEEEE-CCEEEeeecCCCC----HHHHHHHHHHHH
Confidence 113455677887 899999998 9999988877655 466777776654
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-07 Score=77.75 Aligned_cols=84 Identities=10% Similarity=0.062 Sum_probs=62.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
++++++.|| ++||++|+...|.+++++.++. ++.++.|+.+. +
T Consensus 136 ~~~~~v~F~-a~wC~~C~~~~~~~~~~~~~~~--~v~~~~vd~~~----------------------------------~ 178 (229)
T 2ywm_A 136 IPIEIWVFV-TTSCGYCPSAAVMAWDFALAND--YITSKVIDASE----------------------------------N 178 (229)
T ss_dssp SCEEEEEEE-CTTCTTHHHHHHHHHHHHHHCT--TEEEEEEEGGG----------------------------------C
T ss_pred CCeEEEEEE-CCCCcchHHHHHHHHHHHHHCC--CeEEEEEECCC----------------------------------C
Confidence 445588899 9999999999999999998883 78888876642 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
..+.+.|++. .+|++++ +|++ ..+.|.. +.+++.+.|+.+.
T Consensus 179 ~~l~~~~~v~------~~Pt~~~---~G~~-~~~~G~~----~~~~l~~~l~~~~ 219 (229)
T 2ywm_A 179 QDLAEQFQVV------GVPKIVI---NKGV-AEFVGAQ----PENAFLGYIMAVY 219 (229)
T ss_dssp HHHHHHTTCC------SSSEEEE---GGGT-EEEESCC----CHHHHHHHHHHHH
T ss_pred HHHHHHcCCc------ccCEEEE---CCEE-EEeeCCC----CHHHHHHHHHHHh
Confidence 4678889998 8999888 6774 3344543 3566777776554
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=98.63 E-value=5.7e-08 Score=85.18 Aligned_cols=88 Identities=9% Similarity=0.043 Sum_probs=65.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc-CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI-GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~-~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
.+|+++|.|| ++||++|+...|.+.+++++|++. ++.++.|..+. +.
T Consensus 266 ~~k~~lv~f~-a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~------------------------~~------- 313 (361)
T 3uem_A 266 EKKNVFVEFY-APWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTA------------------------NE------- 313 (361)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTT------------------------CB-------
T ss_pred CCCcEEEEEe-cCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCc------------------------cc-------
Confidence 4789999999 999999999999999999999854 46666665442 10
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCC-CcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDRE-GIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~-G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
.+.|++. .+|++++++++ |+....+.| ..+.+++++.|+.-
T Consensus 314 -----~~~~~v~------~~Pt~~~~~~~~~~~~~~~~G----~~~~~~l~~~l~~~ 355 (361)
T 3uem_A 314 -----VEAVKVH------SFPTLKFFPASADRTVIDYNG----ERTLDGFKKFLESG 355 (361)
T ss_dssp -----CSSCCCC------SSSEEEEECSSSSCCCEECCS----CSSHHHHHHHHTTT
T ss_pred -----hhhcCCc------ccCeEEEEECCCCcceeEecC----CCCHHHHHHHHHhc
Confidence 3457887 88999999665 555555434 34578888888754
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-07 Score=91.91 Aligned_cols=91 Identities=8% Similarity=0.102 Sum_probs=71.7
Q ss_pred CCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 78 TDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 78 ~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.++.|++++|.|| ++||++|+..+|.+.+++++++. ++.|+.|+.+.
T Consensus 451 ~~~~~~~vlv~F~-a~wC~~c~~~~p~~~~~a~~~~~-~v~~~~vd~~~------------------------------- 497 (780)
T 3apo_A 451 PASDKEPWLVDFF-APWSPPSRALLPELRKASTLLYG-QLKVGTLDCTI------------------------------- 497 (780)
T ss_dssp CTTCCSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT-------------------------------
T ss_pred HHcCCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEeCCC-------------------------------
Confidence 3457899999999 99999999999999999999975 68999988763
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
...+.+.||+. .+|++++++ +|++ +.+.|. .+.+++.+.++.+.
T Consensus 498 ---~~~~~~~~~v~------~~Pt~~~~~-~g~~-~~~~g~----~~~~~l~~fi~~~~ 541 (780)
T 3apo_A 498 ---HEGLCNMYNIQ------AYPTTVVFN-QSSI-HEYEGH----HSAEQILEFIEDLR 541 (780)
T ss_dssp ---CHHHHHHTTCC------SSSEEEEEE-TTEE-EEECSC----SCHHHHHHHHHHHH
T ss_pred ---CHHHHHHcCCC------cCCeEEEEc-CCce-eeecCc----ccHHHHHHHHHhhc
Confidence 13477889998 789999994 5776 444343 34677877777665
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.9e-07 Score=73.15 Aligned_cols=106 Identities=8% Similarity=0.020 Sum_probs=72.4
Q ss_pred CCCeEEEEEEeC-------CCCCCcHHHHHHHHHHHHHHHh----cCcEEEEEeCCChHhHHHHHHHhhccccccccCCC
Q psy15453 81 RGKYLVFFFYPL-------DFTFVCPTEVLALNEKIDEFHK----IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRL 149 (247)
Q Consensus 81 ~gk~vvl~F~~a-------~~Cp~C~~~~~~l~~l~~~~~~----~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 149 (247)
++.++||.|| | .||++|+...|.+.++.++|.. ..+.|.-|+.|
T Consensus 36 ~~~~vvV~F~-A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d------------------------ 90 (178)
T 3ga4_A 36 PGYFNILYIT-MRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVN------------------------ 90 (178)
T ss_dssp TTCEEEEEEE-CCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT------------------------
T ss_pred CCCcEEEEEe-CCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECc------------------------
Confidence 3558999999 8 4999999999999999999972 24556555554
Q ss_pred CCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEE-----------EEEecCCC--CCCCHHHHHHHHHhhh
Q psy15453 150 DKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVR-----------QITLNDLP--VGRSVEETLRLVRAFQ 216 (247)
Q Consensus 150 ~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~-----------~~~~~~~~--~~~~~~~il~~l~~l~ 216 (247)
.+..+..+||+. .+|+++++-+.+... ..+ .+. .+...+++.+.|..-.
T Consensus 91 ----------~~~~la~~~~I~------siPtl~~F~~g~~~~~~~~~~~~~~~~~y--~~~~~~~~~ae~la~fi~~~t 152 (178)
T 3ga4_A 91 ----------EVPQLVKDLKLQ------NVPHLVVYPPAESNKQSQFEWKTSPFYQY--SLVPENAENTLQFGDFLAKIL 152 (178)
T ss_dssp ----------TCHHHHHHTTCC------SSCEEEEECCCCGGGGGGCCTTTSCCEEE--CCCGGGTTCHHHHHHHHHHHH
T ss_pred ----------cCHHHHHHcCCC------CCCEEEEEcCCCCCCccccccccCCccee--ecccCCCcCHHHHHHHHHHhc
Confidence 346888999999 899999996655332 111 121 3577888999986644
Q ss_pred cccccCCccCCCCc
Q psy15453 217 YTDEHGEACPSGWQ 230 (247)
Q Consensus 217 ~~~~~~~~~~~~~~ 230 (247)
... -...-|.+|.
T Consensus 153 ~~~-i~I~rp~ny~ 165 (178)
T 3ga4_A 153 NIS-ITVPQAFNVQ 165 (178)
T ss_dssp TCC-CCCCCSCC--
T ss_pred CCC-ccccCCCChH
Confidence 321 1344455554
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.7e-08 Score=93.69 Aligned_cols=93 Identities=8% Similarity=0.009 Sum_probs=72.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.||+++|.|| ++||++|+..+|.+.+++++++. ++.++.|+.+.
T Consensus 674 ~~~~v~v~F~-a~wC~~C~~~~p~~~~la~~~~~-~~~~~~vd~~~---------------------------------- 717 (780)
T 3apo_A 674 GKTHWVVDFY-APWSGPSQNFAPEFELLARMIKG-KVRAGKVDCQA---------------------------------- 717 (780)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------------
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CceEEEEECCC----------------------------------
Confidence 4789999999 99999999999999999999975 68888887753
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
...+.+.|++. .+|+++++ ++|+++..+.|......+.+++.+.|+.+.
T Consensus 718 ~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~~~g~~~~~~l~~~l~~~l 766 (780)
T 3apo_A 718 YPQTCQKAGIK------AYPSVKLY-QYERAKKSIWEEQINSRDAKTIAALIYGKL 766 (780)
T ss_dssp CHHHHHHTTCC------SSSEEEEE-EEETTTTEEEEEEECCCCHHHHHHHHHHHT
T ss_pred CHHHHHhcCCC------cCCEEEEE-cCCCccccccCcccCCcCHHHHHHHHHHHH
Confidence 23577889998 88999999 788776555442101345688888887765
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=5.9e-08 Score=88.16 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=57.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc-------CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcc
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI-------GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLK 153 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~-------~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (247)
.+|++||.|| |+||++|+.++|.+.+++++|++. .+.|+.|+.|.
T Consensus 41 ~~k~VlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~--------------------------- 92 (470)
T 3qcp_A 41 PLCPWIVLFY-NDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCAS--------------------------- 92 (470)
T ss_dssp GGSCEEEEEE-CTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTT---------------------------
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCC---------------------------
Confidence 3589999999 999999999999999999998732 27888887763
Q ss_pred eeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCc
Q psy15453 154 IPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGI 190 (247)
Q Consensus 154 ~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~ 190 (247)
+..+.+.|++. .+|++++++++|.
T Consensus 93 -------~~~la~~y~V~------~~PTlilf~~gg~ 116 (470)
T 3qcp_A 93 -------EVDLCRKYDIN------FVPRLFFFYPRDS 116 (470)
T ss_dssp -------CHHHHHHTTCC------SSCEEEEEEESSC
T ss_pred -------CHHHHHHcCCC------ccCeEEEEECCCc
Confidence 24678889998 8999999976653
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-07 Score=72.91 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=38.2
Q ss_pred eeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEe
Q psy15453 73 KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVS 123 (247)
Q Consensus 73 ~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs 123 (247)
....+.+-.++++|+.|| ..|||+|+...|.|.++.+++.+ +.++.+.
T Consensus 13 ~~~~~G~~~a~v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~--v~~~~~~ 60 (175)
T 3gyk_A 13 NAPVLGNPEGDVTVVEFF-DYNCPYCRRAMAEVQGLVDADPN--VRLVYRE 60 (175)
T ss_dssp TSCEEECTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--EEEEEEE
T ss_pred CCCCcCCCCCCEEEEEEE-CCCCccHHHHHHHHHHHHHhCCC--EEEEEEe
Confidence 345556667899999999 99999999999999999988763 5555443
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-07 Score=75.91 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=36.1
Q ss_pred EEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC
Q psy15453 75 IKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV 124 (247)
Q Consensus 75 v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~ 124 (247)
+.+....||++|+.|| +.|||+|++..+.|.++.+ .++.++.+..
T Consensus 79 ~~~g~~~~k~~vv~F~-d~~Cp~C~~~~~~l~~l~~----~~v~v~~~~~ 123 (216)
T 1eej_A 79 IVYKAPQEKHVITVFT-DITCGYCHKLHEQMADYNA----LGITVRYLAF 123 (216)
T ss_dssp EEECCTTCCEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEEC
T ss_pred eeecCCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHh----CCcEEEEEEC
Confidence 4455557899999999 9999999999999988754 2688776643
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.6e-07 Score=86.10 Aligned_cols=88 Identities=9% Similarity=0.183 Sum_probs=63.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc--CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI--GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
.+|+++|.|| ++||++|+...|.+.++.++++.. ++.++.|..+. +
T Consensus 375 ~~k~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~------------------------~------- 422 (504)
T 2b5e_A 375 PKKDVLVLYY-APWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE------------------------N------- 422 (504)
T ss_dssp TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG------------------------C-------
T ss_pred CCCCEEEEEE-CCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCc------------------------c-------
Confidence 4789999999 999999999999999999999732 56666655431 0
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcE--EEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIV--RQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v--~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
.... |++. .+|+++++ ++|+. ...+.| ..+.+++++.|+...
T Consensus 423 ----~~~~-~~v~------~~Pt~~~~-~~G~~~~~~~~~G----~~~~~~l~~~i~~~~ 466 (504)
T 2b5e_A 423 ----DVRG-VVIE------GYPTIVLY-PGGKKSESVVYQG----SRSLDSLFDFIKENG 466 (504)
T ss_dssp ----CCSS-CCCS------SSSEEEEE-CCTTSCCCCBCCS----CCCHHHHHHHHHHHC
T ss_pred ----cccc-CCce------ecCeEEEE-eCCceecceEecC----CCCHHHHHHHHHhcC
Confidence 0112 6777 88999888 67865 333323 345788888887654
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=98.31 E-value=5.1e-06 Score=73.25 Aligned_cols=88 Identities=10% Similarity=0.068 Sum_probs=66.7
Q ss_pred CCeEEEEEEeCCCCCCcHHHH------HHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCccee
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEV------LALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIP 155 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~------~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (247)
+++++|.|| |+||++|...- |.+.++.++++..++.+..|+.+.
T Consensus 30 ~~~vlV~Fy-ApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~----------------------------- 79 (367)
T 3us3_A 30 YEVLALLYH-EPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK----------------------------- 79 (367)
T ss_dssp CSEEEEEEE-CCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTT-----------------------------
T ss_pred CCeEEEEEE-CCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcc-----------------------------
Confidence 689999999 99999974332 577888888876678888887763
Q ss_pred EEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 156 LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 156 ~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
...+++.|++. .+|+++++. +|+.+ .+.| ..+.+.+++.|+...
T Consensus 80 -----~~~l~~~~~V~------~~PTl~~f~-~G~~~-~y~G----~~~~~~i~~~i~~~~ 123 (367)
T 3us3_A 80 -----DAAVAKKLGLT------EEDSIYVFK-EDEVI-EYDG----EFSADTLVEFLLDVL 123 (367)
T ss_dssp -----THHHHHHHTCC------STTEEEEEE-TTEEE-ECCS----CCSHHHHHHHHHHHH
T ss_pred -----cHHHHHHcCCC------cCceEEEEE-CCcEE-EeCC----CCCHHHHHHHHHHhc
Confidence 24788999999 899999995 68764 3323 345788888887654
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.27 E-value=9.7e-07 Score=70.61 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=38.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
.++++|+.|| ..|||+|+...|.+.++.+++.+ ++.+..+..+
T Consensus 24 ~~~~~vv~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGKIEVLEFF-AYTCPHCAAIEPMVEDWAKTAPQ-DVVLKQVPIA 66 (195)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred CCCeEEEEEE-CCCCccHHHhhHHHHHHHHHCCC-CeEEEEEecc
Confidence 4789999999 99999999999999999988875 6888888775
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=98.18 E-value=5.1e-06 Score=69.05 Aligned_cols=123 Identities=9% Similarity=0.022 Sum_probs=69.8
Q ss_pred EEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC--ChHh------------HHHHHHHhhcc
Q psy15453 75 IKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD--SHFT------------HRAWINSLKKD 140 (247)
Q Consensus 75 v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d--~~~~------------~~~~~~~~~~~ 140 (247)
+.+.+-.+|++|+.|| ..|||+|++..+.+.++.++ .++.|..+... .+.+ ...+.+.+..
T Consensus 90 i~~G~~~ak~~v~~F~-D~~Cp~C~~~~~~l~~~~~~---g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~- 164 (241)
T 1v58_A 90 LLDGKKDAPVIVYVFA-DPFCPYCKQFWQQARPWVDS---GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEA- 164 (241)
T ss_dssp EEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHT---TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHH-
T ss_pred ceECCCCCCeEEEEEE-CCCChhHHHHHHHHHHHHhC---CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHH-
Confidence 4444446788999999 99999999999999887654 25776655431 1111 1112222211
Q ss_pred ccccccCCCCCc-----ceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 141 NSLKKDNRLDKL-----KIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 141 ~~~~~~~~~~~~-----~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
.....++... ......+.+..+.+.+|+. .+|++++.|.+|++ ....|..+ .+++.+.|+..
T Consensus 165 --~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~------gtPt~vi~~~~G~~-~~~~G~~~----~~~L~~~l~~~ 231 (241)
T 1v58_A 165 --SGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGAN------VTPAIYYMSKENTL-QQAVGLPD----QKTLNIIMGNK 231 (241)
T ss_dssp --TTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCC------SSCEEEEEETTTEE-EEEESSCC----HHHHHHHTTC-
T ss_pred --HhccCCCCccccCCHHHHHHHHHHHHHHHHcCCC------CCCEEEEECCCCCE-EEecCCCC----HHHHHHHHHHH
Confidence 0000111000 0000112335678889998 89999999988976 33334332 46666666554
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.16 E-value=3.2e-06 Score=57.69 Aligned_cols=65 Identities=25% Similarity=0.217 Sum_probs=46.4
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEIS 165 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 165 (247)
++.|| ++|||+|+...+.+.++.+++ ++.+..+..|... .+.++.
T Consensus 4 ~~~f~-~~~C~~C~~~~~~l~~~~~~~---~~~~~~~~v~~~~-------------------------------~~~~~~ 48 (80)
T 2k8s_A 4 KAIFY-HAGCPVCVSAEQAVANAIDPS---KYTVEIVHLGTDK-------------------------------ARIAEA 48 (80)
T ss_dssp EEEEE-ECSCHHHHHHHHHHHHHSCTT---TEEEEEEETTTCS-------------------------------STHHHH
T ss_pred eEEEe-CCCCCchHHHHHHHHHHHHhc---CCeEEEEEecCCh-------------------------------hhHHHH
Confidence 67788 999999999999998876553 5565555554300 124566
Q ss_pred HHhCCcccCCCccceeEEEEcCCCcEEEE
Q psy15453 166 RDYGVYLEDKGHSLRGLFIIDREGIVRQI 194 (247)
Q Consensus 166 ~~~~~~~~~~g~~~p~~~lId~~G~v~~~ 194 (247)
+.||+. .+|++++ +|+++..
T Consensus 49 ~~~gv~------~vPt~~i---~g~~~~~ 68 (80)
T 2k8s_A 49 EKAGVK------SVPALVI---DGAAFHI 68 (80)
T ss_dssp HHHTCC------EEEEEEE---TTEEEEE
T ss_pred HHcCCC------cCCEEEE---CCEEEEe
Confidence 888988 8998776 7887643
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=98.16 E-value=3.7e-06 Score=61.21 Aligned_cols=70 Identities=14% Similarity=0.032 Sum_probs=45.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+++++++ || ++|||+|+...+.|.++.. .+.++-|..+... ...
T Consensus 18 ~~~~vv~-f~-a~~C~~C~~~~~~l~~~~~-----~~~~v~v~~~~~~--~~~--------------------------- 61 (116)
T 2e7p_A 18 SSAPVVV-FS-KTYCGYCNRVKQLLTQVGA-----SYKVVELDELSDG--SQL--------------------------- 61 (116)
T ss_dssp TSSSEEE-EE-CTTCHHHHHHHHHHHHHTC-----CCEEEEGGGSTTH--HHH---------------------------
T ss_pred cCCCEEE-EE-CCCChhHHHHHHHHHHcCC-----CeEEEEccCCCCh--HHH---------------------------
Confidence 4566555 99 9999999999998887632 2444444333210 000
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
...+.+.||+. .+|++ ++ +|+++..+
T Consensus 62 ~~~l~~~~~v~------~~Pt~-~~--~g~~v~~~ 87 (116)
T 2e7p_A 62 QSALAHWTGRG------TVPNV-FI--GGKQIGGC 87 (116)
T ss_dssp HHHHHHHHSCC------SSCEE-EE--TTEEEECH
T ss_pred HHHHHHHhCCC------CcCEE-EE--CCEEECCh
Confidence 13577889988 88988 45 58877544
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=98.13 E-value=8.8e-06 Score=66.16 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=52.8
Q ss_pred CCCCeEEEEEEeCC-CCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 80 YRGKYLVFFFYPLD-FTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 80 ~~gk~vvl~F~~a~-~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
..++++++.|| +. ||++|+...|.+.++.+.. .++.++.|+.+.++
T Consensus 20 ~~~~v~lv~f~-~~~~C~~C~~~~~~~~~la~~~--~~v~~~~vd~~~~~------------------------------ 66 (226)
T 1a8l_A 20 MVNPVKLIVFV-RKDHCQYCDQLKQLVQELSELT--DKLSYEIVDFDTPE------------------------------ 66 (226)
T ss_dssp CCSCEEEEEEE-CSSSCTTHHHHHHHHHHHHTTC--TTEEEEEEETTSHH------------------------------
T ss_pred cCCCeEEEEEe-cCCCCchhHHHHHHHHHHHhhC--CceEEEEEeCCCcc------------------------------
Confidence 45667788888 99 9999999999999987542 36888888776422
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCc
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGI 190 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~ 190 (247)
...+++.||+. .+|+++++ ++|+
T Consensus 67 --~~~~~~~~~v~------~~Pt~~~~-~~g~ 89 (226)
T 1a8l_A 67 --GKELAKRYRID------RAPATTIT-QDGK 89 (226)
T ss_dssp --HHHHHHHTTCC------SSSEEEEE-ETTB
T ss_pred --cHHHHHHcCCC------cCceEEEE-cCCc
Confidence 14677889998 88998888 4554
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=98.13 E-value=5e-06 Score=62.47 Aligned_cols=92 Identities=9% Similarity=-0.041 Sum_probs=65.5
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
++++++.|| ++ |++|+...|.|.+++++|+. .+.|+-|+.|. .
T Consensus 23 ~~pv~v~f~-a~-~~~c~~~~p~l~~~A~~~~g-k~~f~~vd~d~----------------------------------~ 65 (133)
T 2djk_A 23 GIPLAYIFA-ET-AEERKELSDKLKPIAEAQRG-VINFGTIDAKA----------------------------------F 65 (133)
T ss_dssp TSCEEEEEC-SC-SSSHHHHHHHHHHHHHSSTT-TSEEEEECTTT----------------------------------T
T ss_pred CCCEEEEEe-cC-hhhHHHHHHHHHHHHHHhCC-eEEEEEEchHH----------------------------------h
Confidence 578999999 99 78999999999999999875 48888877653 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcC-CCcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDR-EGIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~-~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
..++..||+... .+|++++++. +|+. +... .......+++.+.|+.+..
T Consensus 66 ~~~a~~~gi~~~----~iPtl~i~~~~~g~~-~~~~--~~g~~~~~~l~~fi~~~l~ 115 (133)
T 2djk_A 66 GAHAGNLNLKTD----KFPAFAIQEVAKNQK-FPFD--QEKEITFEAIKAFVDDFVA 115 (133)
T ss_dssp GGGTTTTTCCSS----SSSEEEEECTTTCCB-CCCC--SSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcc----cCCEEEEEecCcCcc-cCCC--CccccCHHHHHHHHHHHHc
Confidence 356788999821 2899999974 5766 3322 1122335677777776553
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.11 E-value=5e-06 Score=66.22 Aligned_cols=42 Identities=12% Similarity=0.028 Sum_probs=36.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV 124 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~ 124 (247)
.++++|+.|| ..|||+|....|.|.++.+++.+ ++.+.-+..
T Consensus 24 ~~~~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~ 65 (192)
T 3h93_A 24 PGKIEVVELF-WYGCPHCYAFEPTIVPWSEKLPA-DVHFVRLPA 65 (192)
T ss_dssp TTSEEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEEC
T ss_pred CCCCEEEEEE-CCCChhHHHhhHHHHHHHHhCCC-CeEEEEEeh
Confidence 5789999999 99999999999999999888875 677776655
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=98.03 E-value=6.9e-06 Score=65.45 Aligned_cols=42 Identities=21% Similarity=0.112 Sum_probs=36.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV 124 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~ 124 (247)
.++++|+.|| ..|||+|....+.|.++.++++. ++.+..+..
T Consensus 21 ~~~~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~ 62 (195)
T 2znm_A 21 SGKIEVLEFF-GYFCVHCHHFDPLLLKLGKALPS-DAYLRTEHV 62 (195)
T ss_dssp SSSEEEEEEE-CTTSCCTTSSCHHHHHHHHHSCT-TEEEEEEEC
T ss_pred CCCcEEEEEE-CCCChhHHHHhHHHHHHHHHCCC-ceEEEEecc
Confidence 4789999999 99999999999999999988864 677777765
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.02 E-value=2.4e-05 Score=72.03 Aligned_cols=83 Identities=16% Similarity=0.128 Sum_probs=63.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.++..+..|| ++|||+|+...|.++++..++. ++.+.-|+.+.
T Consensus 116 ~~~~~i~~f~-a~~C~~C~~~~~~l~~~a~~~~--~v~~~~vd~~~---------------------------------- 158 (521)
T 1hyu_A 116 DGDFEFETYY-SLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGT---------------------------------- 158 (521)
T ss_dssp CSCEEEEEEE-CTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTT----------------------------------
T ss_pred CCCcceEEEE-CCCCcCcHHHHHHHHHHHhHcC--ceEEEEEechh----------------------------------
Confidence 3567788899 9999999999999999988775 67887776652
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
..++...|++. .+|++++ +|+.+.. |. ...+++++.|+..
T Consensus 159 ~~~~~~~~~i~------svPt~~i---~g~~~~~--G~----~~~~~l~~~l~~~ 198 (521)
T 1hyu_A 159 FQNEITERNVM------GVPAVFV---NGKEFGQ--GR----MTLTEIVAKVDTG 198 (521)
T ss_dssp CHHHHHHTTCC------SSSEEEE---TTEEEEE--SC----CCHHHHHHHHCCS
T ss_pred hHHHHHHhCCC------ccCEEEE---CCEEEec--CC----CCHHHHHHHHhhc
Confidence 25778889998 8898877 7877644 32 3467777777654
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=97.98 E-value=1.6e-05 Score=54.34 Aligned_cols=37 Identities=11% Similarity=-0.051 Sum_probs=31.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
|+.|+ ++|||+|+...+.|.++..+++ ++.+..|+.+
T Consensus 3 v~~f~-~~~C~~C~~~~~~l~~l~~~~~--~i~~~~vdi~ 39 (85)
T 1ego_A 3 TVIFG-RSGCPYCVRAKDLAEKLSNERD--DFQYQYVDIR 39 (85)
T ss_dssp EEEEC-CTTSTHHHHHHHHHHHHHHHHS--SCEEEEECHH
T ss_pred EEEEe-CCCCCCHHHHHHHHHHHHhcCC--CceEEEEecc
Confidence 67788 9999999999999999987764 7888887654
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=1.8e-05 Score=64.32 Aligned_cols=38 Identities=24% Similarity=0.162 Sum_probs=30.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVS 123 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs 123 (247)
.+|++|+.|| ..|||+|++..+.|.++.+ .++.+..+.
T Consensus 85 ~~k~~vv~F~-d~~Cp~C~~~~~~l~~~~~----~~v~v~~~~ 122 (211)
T 1t3b_A 85 NEKHVVTVFM-DITCHYCHLLHQQLKEYND----LGITVRYLA 122 (211)
T ss_dssp TCSEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEE
T ss_pred CCCEEEEEEE-CCCCHhHHHHHHHHHHHHh----CCcEEEEEE
Confidence 4789999999 9999999999999988543 367776553
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00011 Score=57.43 Aligned_cols=50 Identities=10% Similarity=-0.045 Sum_probs=39.4
Q ss_pred eEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc-CcEEEEEeC
Q psy15453 74 EIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI-GAEVVGVSV 124 (247)
Q Consensus 74 ~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~-~~~vl~Vs~ 124 (247)
.+.+.+-.++++|+.|+ ..+||+|....+.+.++.++|.+. +++++....
T Consensus 19 ~~~~G~~~a~v~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~ 69 (175)
T 1z6m_A 19 GLHIGESNAPVKMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF 69 (175)
T ss_dssp SEEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred CcccCCCCCCeEEEEEE-CCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeC
Confidence 34455557889999999 999999999999999999888432 477776654
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=97.86 E-value=2.6e-05 Score=54.45 Aligned_cols=78 Identities=17% Similarity=0.108 Sum_probs=49.8
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEIS 165 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 165 (247)
|+.|| ++||++|+...|.|.++..++ +.-|+.|. +.++.
T Consensus 3 vv~f~-a~~C~~C~~~~~~L~~~~~~~------~~~vdid~----------------------------------~~~l~ 41 (87)
T 1ttz_A 3 LTLYQ-RDDCHLCDQAVEALAQARAGA------FFSVFIDD----------------------------------DAALE 41 (87)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHHTTCCC------EEEEECTT----------------------------------CHHHH
T ss_pred EEEEE-CCCCchHHHHHHHHHHHHHhh------eEEEECCC----------------------------------CHHHH
Confidence 67899 999999999999887663221 34455543 33566
Q ss_pred HHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhcccc
Q psy15453 166 RDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDE 220 (247)
Q Consensus 166 ~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~~ 220 (247)
.+||+ .+|++++ .+|+.+. |. .+.+++.+.|+......+
T Consensus 42 ~~~g~-------~vPtl~~--~~G~~v~---g~----~~~~~L~~~l~~~~~~~~ 80 (87)
T 1ttz_A 42 SAYGL-------RVPVLRD--PMGRELD---WP----FDAPRLRAWLDAAPHALE 80 (87)
T ss_dssp HHHTT-------TCSEEEC--TTCCEEE---SC----CCHHHHHHHHHTCC----
T ss_pred HHhCC-------CcCeEEE--ECCEEEe---CC----CCHHHHHHHHHHHHHHHh
Confidence 67765 3687766 6788874 33 235777788876655444
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=97.80 E-value=6.6e-05 Score=61.13 Aligned_cols=75 Identities=13% Similarity=-0.052 Sum_probs=53.4
Q ss_pred CCeEEEEE----EeCCCCCCcHHHHHHHHHHHHHHHh-cCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeE
Q psy15453 82 GKYLVFFF----YPLDFTFVCPTEVLALNEKIDEFHK-IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPL 156 (247)
Q Consensus 82 gk~vvl~F----~~a~~Cp~C~~~~~~l~~l~~~~~~-~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (247)
+.++|+.| | +.||++|+..+|.+.++++++.+ ..+.+..|+.+
T Consensus 21 ~~v~v~~~~~~~~-~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~------------------------------- 68 (229)
T 2ywm_A 21 EPVSIKLFSQAIG-CESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPF------------------------------- 68 (229)
T ss_dssp SCEEEEEECCCTT-CGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTT-------------------------------
T ss_pred CCeEEEEEccCCC-CcccHHHHHHHHHHHHHHhccCCCCceEEEEecCc-------------------------------
Confidence 34444444 3 77888999999999999888852 34777666543
Q ss_pred EecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecC
Q psy15453 157 LSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLND 198 (247)
Q Consensus 157 l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~ 198 (247)
.+..+.+.||+. .+|++.+++ +|.....+.|.
T Consensus 69 ---~~~~l~~~~~v~------~~Ptl~~~~-~~~~~~~~~G~ 100 (229)
T 2ywm_A 69 ---THKEETEKYGVD------RVPTIVIEG-DKDYGIRYIGL 100 (229)
T ss_dssp ---TCHHHHHHTTCC------BSSEEEEES-SSCCCEEEESC
T ss_pred ---ccHHHHHHcCCC------cCcEEEEEC-CCcccceecCC
Confidence 236789999999 899999996 45554444454
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=5.3e-05 Score=54.07 Aligned_cols=80 Identities=9% Similarity=0.046 Sum_probs=54.2
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
.+++|+.|+ +.|||+|+...+.|.++. .++.+.-|+.|.+ .+
T Consensus 15 ~~~~v~~f~-~~~C~~C~~~~~~L~~l~-----~~i~~~~vdi~~~--------------------------------~~ 56 (100)
T 1wjk_A 15 ALPVLTLFT-KAPCPLCDEAKEVLQPYK-----DRFILQEVDITLP--------------------------------EN 56 (100)
T ss_dssp CCCEEEEEE-CSSCHHHHHHHHHTSTTS-----SSSEEEEEETTSS--------------------------------TT
T ss_pred CCCEEEEEe-CCCCcchHHHHHHHHHhh-----hCCeEEEEECCCc--------------------------------ch
Confidence 457788899 999999999998887653 2578888777631 12
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
.++.+.|| . .+|++ ++ +|+.+. . +. .+.+++.+.|+.+
T Consensus 57 ~el~~~~g-~------~vP~l-~~--~g~~~~-~-~g----~~~~~l~~~l~~~ 94 (100)
T 1wjk_A 57 STWYERYK-F------DIPVF-HL--NGQFLM-M-HR----VNTSKLEKQLRKL 94 (100)
T ss_dssp HHHHHHSS-S------SCSEE-EE--SSSEEE-E-SS----CCHHHHHHHHHSS
T ss_pred HHHHHHHC-C------CCCEE-EE--CCEEEE-e-cC----CCHHHHHHHHHHH
Confidence 45667888 7 88965 45 466652 2 33 2356777777654
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=97.77 E-value=6.5e-05 Score=59.50 Aligned_cols=42 Identities=17% Similarity=-0.039 Sum_probs=35.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV 124 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~ 124 (247)
.++++|+.|| ..+||+|....+.+.++.+++.. .+.+..+..
T Consensus 24 ~a~v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~ 65 (193)
T 2rem_A 24 AGKIEVVEIF-GYTCPHCAHFDSKLQAWGARQAK-DVRFTLVPA 65 (193)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHTSCT-TEEEEEEEC
T ss_pred CCCeEEEEEE-CCCChhHhhhhHHHHHHHHhcCC-ceEEEEeCc
Confidence 5778899999 99999999999999999888764 577766654
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00028 Score=61.42 Aligned_cols=109 Identities=12% Similarity=0.135 Sum_probs=73.3
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCc
Q psy15453 83 KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTH 162 (247)
Q Consensus 83 k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~ 162 (247)
+.++|.|+ +.||+.|....+.+.+++++|+.+ +.++.|..+.. ...
T Consensus 136 ~~~~v~F~-~~~~~~~~~~~~~~~~~A~~~~~~-i~f~~vd~~~~--------------------------------~~~ 181 (361)
T 3uem_A 136 KTHILLFL-PKSVSDYDGKLSNFKTAAESFKGK-ILFIFIDSDHT--------------------------------DNQ 181 (361)
T ss_dssp CEEEEEEC-CSSSSSHHHHHHHHHHHHGGGTTT-CEEEEECTTSG--------------------------------GGH
T ss_pred CcEEEEEE-eCCchhHHHHHHHHHHHHHHccCc-eEEEEecCChH--------------------------------HHH
Confidence 46678888 999999999999999999999853 78888776531 124
Q ss_pred hHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhcccc----cCCccCCCCcC
Q psy15453 163 EISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDE----HGEACPSGWQP 231 (247)
Q Consensus 163 ~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~~----~~~~~~~~~~~ 231 (247)
.+.+.||+... ..|++.+++.++...... ......+.+++.+.++....... .....|..|..
T Consensus 182 ~~~~~fgi~~~----~~P~~~~~~~~~~~~ky~--~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~ 248 (361)
T 3uem_A 182 RILEFFGLKKE----ECPAVRLITLEEEMTKYK--PESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDK 248 (361)
T ss_dssp HHHHHTTCCTT----TCSEEEEEECC--CCEEC--CSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTTT
T ss_pred HHHHHcCCCcc----CCccEEEEEcCCcccccC--CCccccCHHHHHHHHHHHhcCCCcccccCCCCCccccc
Confidence 67788888721 389999998755433322 12235667888888887654322 23445555543
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00017 Score=61.50 Aligned_cols=87 Identities=13% Similarity=0.037 Sum_probs=54.8
Q ss_pred EEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcce
Q psy15453 75 IKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKI 154 (247)
Q Consensus 75 v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (247)
+.+.+..++..++.|| ++|||+|++..|.+.++.+++ . .|..|. .+.
T Consensus 190 ~~la~~l~~~~vV~F~-A~WC~~Ck~l~p~le~lA~~l-----~--~Vd~d~-------------------------~d~ 236 (291)
T 3kp9_A 190 VGLAAHLRQIGGTMYG-AYWCPHCQDQKELFGAAFDQV-----P--YVECSP-------------------------NGP 236 (291)
T ss_dssp HHHHHHHHHTTCEEEE-CTTCHHHHHHHHHHGGGGGGS-----C--EEESCS-------------------------SCS
T ss_pred HHHHHHhCCCCEEEEE-CCCCHHHHHHHHHHHHHHHHc-----C--EEEEee-------------------------cCc
Confidence 3344433444578999 999999999999999886443 1 233331 000
Q ss_pred eEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy15453 155 PLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVR 213 (247)
Q Consensus 155 ~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~ 213 (247)
+ |.+.++.++|++. .+|+.++ +|+. +.|. .+.+++.+.++
T Consensus 237 ~---~~~~~la~~~gI~------~vPT~~i---~G~~---~~G~----~~~~~L~~~l~ 276 (291)
T 3kp9_A 237 G---TPQAQECTEAGIT------SYPTWII---NGRT---YTGV----RSLEALAVASG 276 (291)
T ss_dssp S---SCCCHHHHTTTCC------STTEEEE---TTEE---EESC----CCHHHHHHHTC
T ss_pred h---hhHHHHHHHcCCc------ccCeEEE---CCEE---ecCC----CCHHHHHHHHC
Confidence 0 2357899999999 8999555 6763 3343 23566666553
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0017 Score=53.74 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=63.8
Q ss_pred CCeEEEEEEeC--CCCCCcHHHHHHHHHHHHHHHh-cCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 82 GKYLVFFFYPL--DFTFVCPTEVLALNEKIDEFHK-IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 82 gk~vvl~F~~a--~~Cp~C~~~~~~l~~l~~~~~~-~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
+++++|.|| + +||+ ..|.+.++.++|+. .++.|..|+.|.. + .
T Consensus 22 ~~~vlV~Fy-A~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~-----------------------g------~ 67 (240)
T 2qc7_A 22 SKFVLVKFD-TQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDY-----------------------G------D 67 (240)
T ss_dssp CSEEEEEEC-CSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCS-----------------------S------S
T ss_pred CCCEEEEEe-CCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcc-----------------------c------c
Confidence 579999999 9 9998 88999999999874 3578888776530 0 0
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCc--EEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGI--VRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~--v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+.+..+.+.|++..+ .+|+++++ ++|+ ....+.| ..+.+++.+.|+...
T Consensus 68 ~~~~~l~~~~~V~~~----~~PTl~~f-~~G~~~~~~~y~G----~~~~~~L~~fi~~~~ 118 (240)
T 2qc7_A 68 KLNMELSEKYKLDKE----SYPVFYLF-RDGDFENPVPYTG----AVKVGAIQRWLKGQG 118 (240)
T ss_dssp CCSHHHHHHTTCCGG----GCSEEEEE-ETTCSSCCEECCS----CSCHHHHHHHHHHTT
T ss_pred hhhHHHHHHcCCCCC----CCCEEEEE-eCCCcCcceeecC----CCCHHHHHHHHHHhc
Confidence 123578888888622 47998888 4666 2333323 345788888887663
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0012 Score=49.11 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=24.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
|+.|+ ++|||+|++..+.|.++ ++.+..|..|.
T Consensus 29 vvvf~-~~~Cp~C~~~~~~L~~~-------~i~~~~vdid~ 61 (130)
T 2cq9_A 29 VVIFS-KTSCSYCTMAKKLFHDM-------NVNYKVVELDL 61 (130)
T ss_dssp EEEEE-CSSCSHHHHHHHHHHHH-------TCCCEEEETTT
T ss_pred EEEEE-cCCChHHHHHHHHHHHc-------CCCcEEEECcC
Confidence 34488 99999999988888764 45555666654
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00035 Score=50.60 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=32.7
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 84 YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 84 ~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
.+|+.|| +.||++|+...+.|.++.+++ ++.+.-|+.|.
T Consensus 30 ~~vv~y~-~~~C~~C~~a~~~L~~l~~e~---~i~~~~vDId~ 68 (107)
T 2fgx_A 30 RKLVVYG-REGCHLCEEMIASLRVLQKKS---WFELEVINIDG 68 (107)
T ss_dssp CCEEEEE-CSSCHHHHHHHHHHHHHHHHS---CCCCEEEETTT
T ss_pred cEEEEEe-CCCChhHHHHHHHHHHHHHhc---CCeEEEEECCC
Confidence 5588899 999999999999999998775 57777777764
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0012 Score=46.80 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=19.1
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHH
Q psy15453 85 LVFFFYPLDFTFVCPTEVLALNEK 108 (247)
Q Consensus 85 vvl~F~~a~~Cp~C~~~~~~l~~l 108 (247)
.++.|+ ++|||+|++..+.|.++
T Consensus 13 ~v~~f~-~~~C~~C~~~~~~L~~~ 35 (105)
T 1kte_A 13 KVVVFI-KPTCPFCRKTQELLSQL 35 (105)
T ss_dssp CEEEEE-CSSCHHHHHHHHHHHHS
T ss_pred CEEEEE-cCCCHhHHHHHHHHHHc
Confidence 366688 99999999988888765
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00058 Score=49.61 Aligned_cols=34 Identities=18% Similarity=0.065 Sum_probs=24.5
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcE---EEEEeCC
Q psy15453 84 YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAE---VVGVSVD 125 (247)
Q Consensus 84 ~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~---vl~Vs~d 125 (247)
..|+.|+ ++|||+|++..+.|.++ ++. +..|..|
T Consensus 19 ~~vv~f~-~~~Cp~C~~~~~~L~~~-------~~~~~~~~~vdi~ 55 (114)
T 2hze_A 19 NKVTIFV-KYTCPFCRNALDILNKF-------SFKRGAYEIVDIK 55 (114)
T ss_dssp TCEEEEE-CTTCHHHHHHHHHHTTS-------CBCTTSEEEEEGG
T ss_pred CCEEEEE-eCCChhHHHHHHHHHHc-------CCCcCceEEEEcc
Confidence 3467788 99999999888776643 455 6666654
|
| >2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.013 Score=46.07 Aligned_cols=126 Identities=9% Similarity=0.035 Sum_probs=82.1
Q ss_pred CCCCCCceeeeeecCCceeEEcC----CCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChH
Q psy15453 56 MKPAPYWKGTAVVDGNIKEIKLT----DYRGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 56 G~~~P~f~l~~~~d~~G~~v~l~----~~~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
|...|.|-- ..-.+.+..+ .-.+|+++|++. +.||+.|...-... .++.+-+. .++.+.+.+.+..+
T Consensus 29 g~~~p~F~~----gs~~~Al~~A~~~~k~e~K~LlVyLh-s~~~~~~~~f~~~~L~~~~V~~~l~-~nfV~w~~dv~~~e 102 (178)
T 2ec4_A 29 GDCHPVFFI----GSLEAAFQEAFYVKARDRKLLAIYLH-HDESVLTNVFCSQMLCAESIVSYLS-QNFITWAWDLTKDS 102 (178)
T ss_dssp CSCCCCCCC----SCHHHHHHTTTSSCTTTCCEEEEEEE-CSSCSHHHHHHHHTTTCHHHHHHHH-HTEEEEEEECCSHH
T ss_pred CCCCCCeee----CCHHHHHHHHHhhhhhhCcEEEEEEe-CCCCccHHHHHHHhcCCHHHHHHHH-cCEEEEEEeCCCch
Confidence 667788752 2212234444 446899999999 99999988765443 22333333 38899999999887
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEecCCchHH---HHhCCcccCCCccceeEEEEcCCC---cEEEEEecCCCCC
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEIS---RDYGVYLEDKGHSLRGLFIIDREG---IVRQITLNDLPVG 202 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~---~~~~~~~~~~g~~~p~~~lId~~G---~v~~~~~~~~~~~ 202 (247)
....+...... .. ...++ +.|++. ..|..++|++.| +|+....|..
T Consensus 103 ~~~~~~~~~~~-----------~~--------g~~~a~~~~~~~~~------~~P~l~ii~~~~~~~~vl~~~~G~~--- 154 (178)
T 2ec4_A 103 NRARFLTMCNR-----------HF--------GSVVAQTIRTQKTD------QFPLFLIIMGKRSSNEVLNVIQGNT--- 154 (178)
T ss_dssp HHHHHHHHHHH-----------HT--------CHHHHHHHHHSCST------TCSEEEEECCCSSCCCEEEEECSCC---
T ss_pred hhhhhhhhhhh-----------hh--------HHHHHHHHhhcCCC------CCCeEEEEEcCCCceEEEEEEeCCC---
Confidence 76666654422 01 12333 447887 889999998774 6777776654
Q ss_pred CCHHHHHHHHHhhh
Q psy15453 203 RSVEETLRLVRAFQ 216 (247)
Q Consensus 203 ~~~~~il~~l~~l~ 216 (247)
+.+++++.|....
T Consensus 155 -~~~~ll~~L~~~~ 167 (178)
T 2ec4_A 155 -TVDELMMRLMAAM 167 (178)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHH
Confidence 3678887776553
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.01 Score=49.26 Aligned_cols=95 Identities=17% Similarity=0.089 Sum_probs=64.0
Q ss_pred CCCeEEEEEEe-CCCCCCcHHHHHHHHHHHHHHHh--cCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 81 RGKYLVFFFYP-LDFTFVCPTEVLALNEKIDEFHK--IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 81 ~gk~vvl~F~~-a~~Cp~C~~~~~~l~~l~~~~~~--~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.++++||.||. |+||+ ..|.+.++.++|+. .++.|.-|++|...+
T Consensus 32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~---------------------------- 79 (248)
T 2c0g_A 32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGE---------------------------- 79 (248)
T ss_dssp TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTT----------------------------
T ss_pred cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccc----------------------------
Confidence 35788888885 79997 89999999999874 467888887653000
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcE--EEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIV--RQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v--~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
..+..+++.|++..+ .+|+++++- |.+ ...+ ......+.+++.+.|+...
T Consensus 80 -~~n~~la~~~~V~~~----~~PTl~~F~--G~~~~~~~y--~~~G~~~~~~L~~fi~~~~ 131 (248)
T 2c0g_A 80 -LENKALGDRYKVDDK----NFPSIFLFK--GNADEYVQL--PSHVDVTLDNLKAFVSANT 131 (248)
T ss_dssp -CTTHHHHHHTTCCTT----SCCEEEEES--SSSSSEEEC--CTTSCCCHHHHHHHHHHHS
T ss_pred -cccHHHHHHhCCCcC----CCCeEEEEe--CCcCcceee--cccCCCCHHHHHHHHHHhh
Confidence 013578888888622 479999995 763 2222 0112456788889888764
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0016 Score=49.65 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=23.0
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
|+.|+ ++|||+|+...+.|.++ ++.+..|..|
T Consensus 51 Vvvf~-~~~Cp~C~~~k~~L~~~-------~i~~~~vdId 82 (146)
T 2ht9_A 51 VVIFS-KTSCSYCTMAKKLFHDM-------NVNYKVVELD 82 (146)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHHH-------TCCCEEEEGG
T ss_pred EEEEE-CCCChhHHHHHHHHHHc-------CCCeEEEECc
Confidence 34488 99999999988888764 4555555554
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0031 Score=52.02 Aligned_cols=63 Identities=8% Similarity=0.036 Sum_probs=47.7
Q ss_pred CCeEEEEEEeCCC--CCCcHHHHHHHHHHHHHHHh-cC---cEEEEEeCCChHhHHHHHHHhhccccccccCCCCCccee
Q psy15453 82 GKYLVFFFYPLDF--TFVCPTEVLALNEKIDEFHK-IG---AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIP 155 (247)
Q Consensus 82 gk~vvl~F~~a~~--Cp~C~~~~~~l~~l~~~~~~-~~---~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (247)
+++++|.|| +.| |++|+...+.+.++.+.+.+ +| +.|+.++.|
T Consensus 25 ~~pv~v~~~-~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d------------------------------ 73 (243)
T 2hls_A 25 VNPVEVHVF-LSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRE------------------------------ 73 (243)
T ss_dssp CSCEEEEEE-ECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETT------------------------------
T ss_pred CCCEEEEEE-eCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCC------------------------------
Confidence 578999999 999 99999999999999877421 11 555555443
Q ss_pred EEecCCchHHHHhCCcccCCCccceeEEEE
Q psy15453 156 LLSDLTHEISRDYGVYLEDKGHSLRGLFII 185 (247)
Q Consensus 156 ~l~D~~~~~~~~~~~~~~~~g~~~p~~~lI 185 (247)
.+..+.+.||+. .+|++.++
T Consensus 74 ----~~~~~~~~~gv~------~~Pt~~i~ 93 (243)
T 2hls_A 74 ----SDSDKFSEFKVE------RVPTVAFL 93 (243)
T ss_dssp ----TTHHHHHHTTCC------SSSEEEET
T ss_pred ----cCHHHHHhcCCC------cCCEEEEE
Confidence 235788889998 78988877
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00066 Score=54.08 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=37.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
.++++|+.|| ..|||+|+...|.+.++.+++.+ ++.+.-+..+
T Consensus 23 ~~~v~vv~f~-d~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFF-GYFCPHCAHLEPVLSKHAKSFKD-DMYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEE-CTTCHHHHHHHHHHHHHHTTCCT-TEEEEEEECC
T ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHCCC-CeEEEEecCC
Confidence 3789999999 99999999999999999888876 5777777654
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.002 Score=43.16 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=26.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
++.|+ ++|||+|+...+.|.+ .++.+..|+.+.
T Consensus 3 v~~f~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~ 35 (81)
T 1h75_A 3 ITIYT-RNDCVQCHATKRAMEN-------RGFDFEMINVDR 35 (81)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEETTT
T ss_pred EEEEc-CCCChhHHHHHHHHHH-------CCCCeEEEECCC
Confidence 56788 9999999998887764 367777777765
|
| >4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0036 Score=48.59 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=33.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGV 122 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~V 122 (247)
.++++|+.|+ .-.||+|....+.+.++.+++.+ ++.++-+
T Consensus 20 ~~~~~vvEf~-dy~Cp~C~~~~~~~~~l~~~~~~-~~~~~~~ 59 (184)
T 4dvc_A 20 SSSPVVSEFF-SFYCPHCNTFEPIIAQLKQQLPE-GAKFQKN 59 (184)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHTSCT-TCEEEEE
T ss_pred CCCCEEEEEE-CCCCHhHHHHhHHHHHHHhhcCC-ceEEEEE
Confidence 3688999999 99999999999999999888865 4555544
|
| >3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0033 Score=45.90 Aligned_cols=33 Identities=9% Similarity=0.268 Sum_probs=23.0
Q ss_pred EEEEEeCCCCCCcHHH-HHHHHHHHHHHHhcC---cEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTE-VLALNEKIDEFHKIG---AEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~-~~~l~~l~~~~~~~~---~~vl~Vs~d~ 126 (247)
|+.|+ ++|||+|++. .+.|.+ .+ +.+..|+.|.
T Consensus 27 Vvvf~-~~~Cp~C~~alk~~L~~-------~~~~~i~~~~vdid~ 63 (118)
T 3c1r_A 27 IFVAS-KTYCPYCHAALNTLFEK-------LKVPRSKVLVLQLND 63 (118)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHTT-------SCCCGGGEEEEEGGG
T ss_pred EEEEE-cCCCcCHHHHHHHHHHH-------cCCCCCCeEEEECcc
Confidence 55688 9999999987 554433 34 6676776654
|
| >3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.007 Score=42.83 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=24.5
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 84 YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 84 ~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
..++.|+ ++|||+|++..+.|.++ ++.+-.+..|
T Consensus 22 ~~v~ly~-~~~Cp~C~~ak~~L~~~-------~i~y~~vdI~ 55 (103)
T 3nzn_A 22 GKVIMYG-LSTCVWCKKTKKLLTDL-------GVDFDYVYVD 55 (103)
T ss_dssp SCEEEEE-CSSCHHHHHHHHHHHHH-------TBCEEEEEGG
T ss_pred CeEEEEc-CCCCchHHHHHHHHHHc-------CCCcEEEEee
Confidence 3466788 99999999998888764 4544445544
|
| >1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00026 Score=56.91 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=37.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
.++++||.|| +.|||+|+...|.+ .++.+++++ ++.|.-+..+.
T Consensus 112 ~~~~~vveFf-~~~C~~C~~~~p~~~~~~~l~~~~~~-~v~~~~~~v~~ 158 (197)
T 1un2_A 112 AGAPQVLEFF-SFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHVNF 158 (197)
T ss_dssp TTCCSEEEEE-CTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEECSS
T ss_pred CCCCEEEEEE-CCCChhHHHhCcccccHHHHHHHCCC-CCEEEEeccCc
Confidence 4789999999 99999999999998 888888864 68888777653
|
| >2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.022 Score=39.78 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=25.6
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
|..|. .+|||+|.+.-..|.+ +|+.+--++.+...
T Consensus 6 I~vYs-~~~Cp~C~~aK~~L~~-------~gi~y~~idi~~d~ 40 (92)
T 2lqo_A 6 LTIYT-TSWCGYCLRLKTALTA-------NRIAYDEVDIEHNR 40 (92)
T ss_dssp EEEEE-CTTCSSHHHHHHHHHH-------TTCCCEEEETTTCH
T ss_pred EEEEc-CCCCHhHHHHHHHHHh-------cCCceEEEEcCCCH
Confidence 55667 9999999987665543 47888788876533
|
| >3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.013 Score=40.10 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=17.7
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEK 108 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l 108 (247)
+..|+ ++|||+|++....|.++
T Consensus 14 v~ly~-~~~Cp~C~~~~~~L~~~ 35 (92)
T 3ic4_A 14 VLMYG-LSTCPHCKRTLEFLKRE 35 (92)
T ss_dssp SEEEE-CTTCHHHHHHHHHHHHH
T ss_pred EEEEE-CCCChHHHHHHHHHHHc
Confidence 55677 99999999988777754
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0067 Score=39.68 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=25.5
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
++.|+ +.|||+|++..+.|.++ ++.+..+..+.
T Consensus 3 i~~y~-~~~C~~C~~~~~~l~~~-------~i~~~~~di~~ 35 (75)
T 1r7h_A 3 ITLYT-KPACVQCTATKKALDRA-------GLAYNTVDISL 35 (75)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHHT-------TCCCEEEETTT
T ss_pred EEEEe-CCCChHHHHHHHHHHHc-------CCCcEEEECCC
Confidence 56677 99999999988887643 67777777764
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0044 Score=47.28 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=27.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGV 122 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~V 122 (247)
.++++|+.|. ..+||+|++..+.|.++ . ++.++.+
T Consensus 13 ~a~~~vv~f~-D~~Cp~C~~~~~~l~~l----~--~v~v~~~ 47 (147)
T 3gv1_A 13 NGKLKVAVFS-DPDCPFCKRLEHEFEKM----T--DVTVYSF 47 (147)
T ss_dssp TCCEEEEEEE-CTTCHHHHHHHHHHTTC----C--SEEEEEE
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHhhc----C--ceEEEEE
Confidence 4788999999 99999999999988754 2 4665544
|
| >3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.017 Score=41.64 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=23.8
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
|+.|+ .+|||+|.+....|.++ |+.+-.+..|.
T Consensus 19 v~vy~-~~~Cp~C~~ak~~L~~~-------~i~~~~~dvd~ 51 (114)
T 3h8q_A 19 VVIFS-KSYCPHSTRVKELFSSL-------GVECNVLELDQ 51 (114)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHHT-------TCCCEEEETTT
T ss_pred EEEEE-cCCCCcHHHHHHHHHHc-------CCCcEEEEecC
Confidence 44588 99999999887777653 56666666664
|
| >3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0039 Score=49.23 Aligned_cols=39 Identities=15% Similarity=0.020 Sum_probs=32.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV 124 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~ 124 (247)
++++|+.|| ..|||+|.+..|.+.++.+++ ++.+.-+..
T Consensus 22 ~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~---~v~~~~~p~ 60 (185)
T 3feu_A 22 GMAPVTEVF-ALSCGHCRNMENFLPVISQEA---GTDIGKMHI 60 (185)
T ss_dssp CCCSEEEEE-CTTCHHHHHHGGGHHHHHHHH---TSCCEEEEC
T ss_pred CCCEEEEEE-CCCChhHHHhhHHHHHHHHHh---CCeEEEEec
Confidence 689999999 999999999999999999888 455555543
|
| >3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0026 Score=50.40 Aligned_cols=43 Identities=14% Similarity=0.119 Sum_probs=34.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d 125 (247)
.++++|+.|| ..|||+|+...|.+ .++.+++.+ ++.++.+...
T Consensus 13 ~~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 58 (189)
T 3l9v_A 13 VDAPAVVEFF-SFYCPPCYAFSQTMGVDQAIRHVLPQ-GSRMVKYHVS 58 (189)
T ss_dssp TTCCSEEEEE-CTTCHHHHHHHHTSCHHHHHHTTCCT-TCCEEEEECS
T ss_pred CCCCEEEEEE-CCCChhHHHHhHhccchHHHHHhCCC-CCEEEEEech
Confidence 4688999999 99999999999987 566666654 5777777654
|
| >2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.029 Score=38.18 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=24.4
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
++.|+ ++|||+|++..+.|.+. ++.+..|..+
T Consensus 8 v~~y~-~~~C~~C~~~~~~L~~~-------~i~~~~vdv~ 39 (89)
T 2klx_A 8 IILYT-RPNCPYCKRARDLLDKK-------GVKYTDIDAS 39 (89)
T ss_dssp EEEES-CSCCTTTHHHHHHHHHH-------TCCEEEECSC
T ss_pred EEEEE-CCCChhHHHHHHHHHHc-------CCCcEEEECC
Confidence 56677 99999999887777653 5677777776
|
| >3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.018 Score=40.54 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=27.8
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 83 KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 83 k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
+..|+.|+ ++|||+|++....|.++ ++.+..|..+..
T Consensus 15 ~~~v~vy~-~~~Cp~C~~ak~~L~~~-------~i~y~~idI~~~ 51 (99)
T 3qmx_A 15 SAKIEIYT-WSTCPFCMRALALLKRK-------GVEFQEYCIDGD 51 (99)
T ss_dssp CCCEEEEE-CTTCHHHHHHHHHHHHH-------TCCCEEEECTTC
T ss_pred CCCEEEEE-cCCChhHHHHHHHHHHC-------CCCCEEEEcCCC
Confidence 44567788 99999999998888754 566666776653
|
| >2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.028 Score=39.73 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=23.5
Q ss_pred EEEEEeC-----CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPL-----DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a-----~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
|+.|+ . +|||+|++..+.|.++ ++.+..|+.+.
T Consensus 19 vvvf~-~g~~~~~~C~~C~~~~~~L~~~-------~i~~~~vdi~~ 56 (105)
T 2yan_A 19 VMLFM-KGNKQEAKCGFSKQILEILNST-------GVEYETFDILE 56 (105)
T ss_dssp EEEEE-SBCSSSBCTTHHHHHHHHHHHH-------TCCCEEEEGGG
T ss_pred EEEEE-ecCCCCCCCccHHHHHHHHHHC-------CCCeEEEECCC
Confidence 33477 6 9999999888877654 56666666654
|
| >1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.041 Score=36.44 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=23.9
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
++.|+ +.|||+|++..+.|.+. ++.+..+..+.
T Consensus 3 i~~y~-~~~C~~C~~~~~~l~~~-------~i~~~~~~i~~ 35 (82)
T 1fov_A 3 VEIYT-KETCPYCHRAKALLSSK-------GVSFQELPIDG 35 (82)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHHH-------TCCCEEEECTT
T ss_pred EEEEE-CCCChhHHHHHHHHHHC-------CCCcEEEECCC
Confidence 55677 99999999888777653 56666666653
|
| >3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.02 Score=42.43 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=21.8
Q ss_pred EEEEEeCCCCCCcHHH-HHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 86 VFFFYPLDFTFVCPTE-VLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~-~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
|+.|+ .+|||+|++. .+.|.++. ...+.+-.|..|
T Consensus 39 Vvvy~-~~~Cp~C~~a~k~~L~~~~----~~~i~~~~vdvd 74 (129)
T 3ctg_A 39 VFVAA-KTYCPYCKATLSTLFQELN----VPKSKALVLELD 74 (129)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHTTSC----CCGGGEEEEEGG
T ss_pred EEEEE-CCCCCchHHHHHHHHHhcC----ccCCCcEEEEcc
Confidence 56778 9999999987 55554321 001555555554
|
| >3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.025 Score=40.49 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=23.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
|+.|+ ++|||+|++..+.|.++ ++.+-.+..|
T Consensus 21 v~vy~-~~~Cp~C~~~~~~L~~~-------~i~~~~~di~ 52 (113)
T 3rhb_A 21 VVIYS-KTWCSYCTEVKTLFKRL-------GVQPLVVELD 52 (113)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHHT-------TCCCEEEEGG
T ss_pred EEEEE-CCCChhHHHHHHHHHHc-------CCCCeEEEee
Confidence 56688 99999999888777653 5555555554
|
| >2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.057 Score=36.81 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=24.5
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
++.|+ ++|||+|++..+.|.+ .++.+..+..+.
T Consensus 8 v~ly~-~~~C~~C~~~~~~L~~-------~~i~~~~~di~~ 40 (92)
T 2khp_A 8 VIIYT-RPGCPYCARAKALLAR-------KGAEFNEIDASA 40 (92)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEESTT
T ss_pred EEEEE-CCCChhHHHHHHHHHH-------cCCCcEEEECCC
Confidence 56677 9999999987776664 367776777664
|
| >3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.11 Score=34.76 Aligned_cols=21 Identities=14% Similarity=-0.005 Sum_probs=16.4
Q ss_pred EEEEEeCCCCCCcHHHHHHHHH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNE 107 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~ 107 (247)
++.|+ .+|||+|++....|.+
T Consensus 6 v~ly~-~~~Cp~C~~~~~~L~~ 26 (89)
T 3msz_A 6 VKIYT-RNGCPYCVWAKQWFEE 26 (89)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHH
T ss_pred EEEEE-cCCChhHHHHHHHHHH
Confidence 56677 9999999987766654
|
| >1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.12 Score=36.63 Aligned_cols=27 Identities=15% Similarity=0.003 Sum_probs=21.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 93 DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 93 ~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+|||+|++....|.++ ++.+..|..+.
T Consensus 28 ~~Cp~C~~ak~~L~~~-------~i~~~~vdi~~ 54 (109)
T 1wik_A 28 AKCGFSKQILEILNST-------GVEYETFDILE 54 (109)
T ss_dssp CCSSTHHHHHHHHHHT-------CSCEEEEESSS
T ss_pred CCCchHHHHHHHHHHc-------CCCeEEEECCC
Confidence 9999999887777643 77887887765
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.21 Score=40.57 Aligned_cols=59 Identities=12% Similarity=0.223 Sum_probs=43.4
Q ss_pred CcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhccc
Q psy15453 151 KLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTD 219 (247)
Q Consensus 151 ~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 219 (247)
+..+....+.+..+.+.||+. ..|+.++++++|++..... .....+.+-..|+.+....
T Consensus 184 ~i~v~~~~~~~~~l~~~f~v~------~~Pslvl~~~~g~~~~~~~----~~~~r~~~~~~l~~~~~~~ 242 (244)
T 3q6o_A 184 GVAVRRVLNTEANVVRKFGVT------DFPSCYLLFRNGSVSRVPV----LMESRSFYTAYLQRLSGLT 242 (244)
T ss_dssp TEEEEEEETTCHHHHHHHTCC------CSSEEEEEETTSCEEECCC----SSSSHHHHHHHHHTC----
T ss_pred ceEEEEEeCchHHHHHHcCCC------CCCeEEEEeCCCCeEeecc----ccccHHHHHHHHHhCCCCC
Confidence 467777788889999999999 8899999999999997752 2333466667777776543
|
| >3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A | Back alignment and structure |
|---|
Probab=94.01 E-value=0.021 Score=45.26 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=34.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSV 124 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~ 124 (247)
.++++|+.|+ ..+||+|.+..+.+ .++.+++.+ ++.|+-+..
T Consensus 20 ~~~~~vvef~-d~~Cp~C~~~~~~l~~~~~l~~~~~~-~v~~~~~~~ 64 (191)
T 3l9s_A 20 AGEPQVLEFF-SFYCPHCYQFEEVLHVSDNVKKKLPE-GTKMTKYHV 64 (191)
T ss_dssp CSSSCEEEEE-CTTCHHHHHHHHTSCHHHHHHHHSCT-TCCEEEEEC
T ss_pred CCCCeEEEEE-CCCChhHHHhChhccchHHHHHhCCC-CcEEEEEec
Confidence 4689999999 99999999999987 588888864 567766653
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=93.75 E-value=0.97 Score=36.18 Aligned_cols=95 Identities=9% Similarity=-0.034 Sum_probs=62.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+.+.++.||...||+.|...++.+.+++++|+.+ +.++.|..+... .
T Consensus 130 ~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~-i~F~~vd~~~~~--------------------------------~ 176 (227)
T 4f9z_D 130 VIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGK-ILFILVDSGMKE--------------------------------N 176 (227)
T ss_dssp SCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTT-CEEEEEETTSGG--------------------------------G
T ss_pred CCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCC-EEEEEeCCccHh--------------------------------H
Confidence 4444444443779999999999999999999863 788777765311 1
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+.+.+.||+... ..|+..+++..+...+... . ..-+.+.|.+.++.+.
T Consensus 177 ~~~l~~fgl~~~----~~P~~~i~~~~~~~ky~~~--~-~~~t~~~i~~Fv~~~~ 224 (227)
T 4f9z_D 177 GKVISFFKLKES----QLPALAIYQTLDDEWDTLP--T-AEVSVEHVQNFCDGFL 224 (227)
T ss_dssp HHHHHHTTCCGG----GCSEEEEEESSSCCEEEET--T-CCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcc----cCCEEEEEECCCCccccCC--c-CCCCHHHHHHHHHHHh
Confidence 234456777522 5799999987665454441 1 2345788888887764
|
| >3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A | Back alignment and structure |
|---|
Probab=93.17 E-value=0.11 Score=40.50 Aligned_cols=43 Identities=5% Similarity=-0.027 Sum_probs=35.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH-HHHHHHHHhcCcEEEEEeCC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL-NEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l-~~l~~~~~~~~~~vl~Vs~d 125 (247)
.+++++|.|| ...||+|....+.+ .++.+++.. .+.+..+..+
T Consensus 16 ~~~~~~ief~-d~~CP~C~~~~~~l~~~l~~~~~~-~v~~~~~~l~ 59 (195)
T 3c7m_A 16 NADKTLIKVF-SYACPFCYKYDKAVTGPVSEKVKD-IVAFTPFHLE 59 (195)
T ss_dssp SCTTEEEEEE-CTTCHHHHHHHHHTHHHHHHHTTT-TCEEEEEECT
T ss_pred CCCcEEEEEE-eCcCcchhhCcHHHHHHHHHhCCC-ceEEEEEecC
Confidence 3677889999 89999999999999 888888763 5777777654
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=91.34 E-value=9.5 Score=35.74 Aligned_cols=143 Identities=12% Similarity=0.061 Sum_probs=82.4
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCC-C--CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHH----------h---
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDY-R--GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH----------K--- 114 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~-~--gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~----------~--- 114 (247)
..+.+|..+|++.+. ...+|++++|.++ . |+++||.|- +.-.. ......+.++.+.+. .
T Consensus 477 ~~~~~G~r~p~~~~~--~~~~g~~~~l~~~l~~~g~~~ll~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 551 (665)
T 1pn0_A 477 KNCVVGTRFKSQPVV--RHSEGLWMHFGDRLVTDGRFRIIVFA-GKATD--ATQMSRIKKFAAYLDSENSVISRYTPKGA 551 (665)
T ss_dssp TTSCTTSBCCCCEEE--ETTTTEEEEGGGGCCCSSCEEEEEEE-ECTTS--HHHHHHHHHHHHHHHSTTSHHHHHSBTTS
T ss_pred CCCCCcCCCCCCeEE--ecCCCcEEEHhHhhccCCCEEEEEec-CCccc--chhHHHHHHHHHHhhccccHHhhcCCccc
Confidence 346789999999972 2347889999884 3 689999886 43211 222344444444442 1
Q ss_pred ---cCcEEEEEeCCChHhH--HHHHHHhhccccccccCCCCCcceeEEecC------CchHHHHhCCcccCCCccceeEE
Q psy15453 115 ---IGAEVVGVSVDSHFTH--RAWINSLKKDNSLKKDNRLDKLKIPLLSDL------THEISRDYGVYLEDKGHSLRGLF 183 (247)
Q Consensus 115 ---~~~~vl~Vs~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~------~~~~~~~~~~~~~~~g~~~p~~~ 183 (247)
.-+.++.|...+..+. ..+.. +.+.. +. ..+.++.|. .+...+.||+.. ..-+.+
T Consensus 552 ~~~~~~~~~~i~~~~~~~~~~~~~p~------~~~~~-~~--~~~~~~~d~~~~~~~~~~~~~~~g~~~-----~~g~~v 617 (665)
T 1pn0_A 552 DRNSRIDVITIHSCHRDDIEMHDFPA------PALHP-KW--QYDFIYADCDSWHHPHPKSYQAWGVDE-----TKGAVV 617 (665)
T ss_dssp CTTSSEEEEEEESSCTTSCCGGGSCT------TTTSC-TT--CCSSEEECSCCSSSCCCCHHHHHTBCT-----TTCEEE
T ss_pred CccceeEEEEEecCCCCccchhhCCH------HHcCc-cc--chheEeecCcccccccccHHHHcCCCC-----CCceEE
Confidence 1267777744321110 00000 00000 11 012445563 466899999862 135789
Q ss_pred EEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 184 IIDREGIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 184 lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
||-|||.|-++. . ..+.+++.+.+..+-.
T Consensus 618 lvRPD~yV~~~~--~---~~~~~~l~~~~~~~~~ 646 (665)
T 1pn0_A 618 VVRPDGYTSLVT--D---LEGTAEIDRYFSGILV 646 (665)
T ss_dssp EECTTSBEEEEE--C---TTTHHHHHHHHHTTBC
T ss_pred EECCCCcEEEEe--c---cccHHHHHHHHHHHhc
Confidence 999999999885 2 2246788888877653
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=90.60 E-value=3.6 Score=38.35 Aligned_cols=147 Identities=13% Similarity=0.035 Sum_probs=80.8
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCC---CCeEEEEEEeCCCCCCcH-HHHHHHHHHH--------HHHHhc----
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYR---GKYLVFFFYPLDFTFVCP-TEVLALNEKI--------DEFHKI---- 115 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~---gk~vvl~F~~a~~Cp~C~-~~~~~l~~l~--------~~~~~~---- 115 (247)
.+.+|..+|+..+. ...+|+.++|.++. |+++||.|- ..-.+.+. ..+..+.+.. ..|...
T Consensus 466 ~~~~G~r~p~~~~~--~~~~g~~~~l~~~~~~~g~~~ll~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 542 (639)
T 2dkh_A 466 GFTVGMRFHSAPVV--RVCDAKPVQLGHCGKADGRWRLYAFA-AQNDLAQPESGLLALCRFLEGDAASPLRRFTPAGQDI 542 (639)
T ss_dssp TSCTTSBCCCCEEE--ETTTCCEEEGGGGCCSSSCEEEEEEC-CTTTTTCTTSHHHHHHHHHHHCTTCHHHHHSCTTSCT
T ss_pred CCCCcCCCCCCeEE--ecCCCCEEEHHHhhccCCCEEEEEec-CCCCchhhHHHHHHHHHHHhhCCccHHHhcCCCCCCc
Confidence 46789999999973 23478889998843 689999886 44344343 3333333322 234211
Q ss_pred --CcEEEEEeCCChHhH--HHHHHHhhccccccccCCCCCcceeEEecCC----chHHHHhCCcccCCCccceeEEEEcC
Q psy15453 116 --GAEVVGVSVDSHFTH--RAWINSLKKDNSLKKDNRLDKLKIPLLSDLT----HEISRDYGVYLEDKGHSLRGLFIIDR 187 (247)
Q Consensus 116 --~~~vl~Vs~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~----~~~~~~~~~~~~~~g~~~p~~~lId~ 187 (247)
=+.++.|...+..+. ..+-. .++++-...|+.. .+.++.|.. +.+.+.||+.. .....+||-|
T Consensus 543 ~~~~~~~~i~~~~~~~~~~~~~p~---~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~g~~~-----~~g~~v~vRP 613 (639)
T 2dkh_A 543 DSIFDLRAVFPQAYTEVALETLPA---LLLPPKGQLGMID-YEKVFSPDLKNAGQDIFELRGIDR-----QQGALVVVRP 613 (639)
T ss_dssp TSSEEEEEECSSCGGGCCGGGSCG---GGSCEETTTTEEC-CCSEEECCCSSTTCCHHHHTTBCT-----TTCEEEEECT
T ss_pred CceEEEEEEecCCCCccchhhCcH---hhCCccccccccc-ceeEEeCCCcccccchHHHhCCCC-----CceEEEEECC
Confidence 257777744431110 11000 0011111122101 135566632 56889999762 1367899999
Q ss_pred CCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 188 EGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 188 ~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
||.|-++. . ..+.+.+.+.+..+
T Consensus 614 D~yv~~~~--~---~~~~~~l~~~~~~~ 636 (639)
T 2dkh_A 614 DQYVAQVL--P---LGDHAALSAYFESF 636 (639)
T ss_dssp TSBEEEEE--C---TTCHHHHHHHHHTT
T ss_pred CCceEEee--c---hhhHHHHHHHHHHH
Confidence 99999875 2 22456776666554
|
| >3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=90.30 E-value=0.25 Score=41.39 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=31.1
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV 124 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~ 124 (247)
|+.+|+.|+ -..||+|++..+.|.+..++ -.+.++.+..
T Consensus 147 gk~~I~vFt-Dp~CPYCkkl~~~l~~~l~~---~~Vr~i~~Pi 185 (273)
T 3tdg_A 147 KDKILYIVS-DPMCPHCQKELTKLRDHLKE---NTVRMVVVGW 185 (273)
T ss_dssp TTCEEEEEE-CTTCHHHHHHHHTHHHHHHH---CEEEEEECCC
T ss_pred CCeEEEEEE-CcCChhHHHHHHHHHHHhhC---CcEEEEEeec
Confidence 678999999 99999999999999976543 3566666554
|
| >3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.94 E-value=0.9 Score=32.90 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=18.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCcE---EEEEeCCC
Q psy15453 94 FTFVCPTEVLALNEKIDEFHKIGAE---VVGVSVDS 126 (247)
Q Consensus 94 ~Cp~C~~~~~~l~~l~~~~~~~~~~---vl~Vs~d~ 126 (247)
|||+|.+....|++. |+. +..+..+.
T Consensus 30 ~Cp~C~~ak~lL~~~-------gv~~~~~~~~dv~~ 58 (121)
T 3gx8_A 30 KCGFSRATIGLLGNQ-------GVDPAKFAAYNVLE 58 (121)
T ss_dssp CTTHHHHHHHHHHHH-------TBCGGGEEEEECTT
T ss_pred CCccHHHHHHHHHHc-------CCCcceEEEEEecC
Confidence 999999987777654 555 55566554
|
| >1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A | Back alignment and structure |
|---|
Probab=89.88 E-value=0.75 Score=30.83 Aligned_cols=32 Identities=9% Similarity=-0.061 Sum_probs=22.8
Q ss_pred EEEEEeCC----CCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 86 VFFFYPLD----FTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 86 vl~F~~a~----~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
|+.|+ .+ |||+|.+....|++ +|+.+-.+..+
T Consensus 2 v~iY~-~~~~~~~Cp~C~~ak~~L~~-------~gi~y~~idI~ 37 (87)
T 1aba_A 2 FKVYG-YDSNIHKCGPCDNAKRLLTV-------KKQPFEFINIM 37 (87)
T ss_dssp EEEEE-CCTTTSCCHHHHHHHHHHHH-------TTCCEEEEESC
T ss_pred EEEEE-eCCCCCcCccHHHHHHHHHH-------cCCCEEEEEee
Confidence 44566 89 99999877666654 36777777766
|
| >3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.23 E-value=0.39 Score=34.32 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=22.7
Q ss_pred EEEEEeC-----CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPL-----DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a-----~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
|+.|. . +|||+|.+...-|.+ .|+.+..+..+.
T Consensus 18 Vvlf~-kg~~~~~~Cp~C~~ak~~L~~-------~gi~y~~~di~~ 55 (111)
T 3zyw_A 18 CMLFM-KGTPQEPRCGFSKQMVEILHK-------HNIQFSSFDIFS 55 (111)
T ss_dssp EEEEE-SBCSSSBSSHHHHHHHHHHHH-------TTCCCEEEEGGG
T ss_pred EEEEE-ecCCCCCcchhHHHHHHHHHH-------cCCCeEEEECcC
Confidence 45566 6 899999988777764 366666666543
|
| >3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.28 E-value=0.5 Score=34.71 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=17.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNE 107 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~ 107 (247)
|+.|. .+|||+|.+.-..|.+
T Consensus 16 Vvvys-k~~Cp~C~~ak~lL~~ 36 (127)
T 3l4n_A 16 IIIFS-KSTCSYSKGMKELLEN 36 (127)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHH
T ss_pred EEEEE-cCCCccHHHHHHHHHH
Confidence 66777 8999999988777765
|
| >2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A | Back alignment and structure |
|---|
Probab=87.67 E-value=0.44 Score=35.46 Aligned_cols=27 Identities=19% Similarity=0.037 Sum_probs=19.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 93 DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 93 ~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
.|||+|++....|+++ ++.+..|..+.
T Consensus 48 ~~Cp~C~~ak~~L~~~-------gv~y~~vdI~~ 74 (135)
T 2wci_A 48 PSCGFSAQAVQALAAC-------GERFAYVDILQ 74 (135)
T ss_dssp BSSHHHHHHHHHHHTT-------CSCCEEEEGGG
T ss_pred CCCccHHHHHHHHHHc-------CCceEEEECCC
Confidence 7999999877776543 67776676653
|
| >3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A | Back alignment and structure |
|---|
Probab=87.30 E-value=0.61 Score=33.00 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=18.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 94 FTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 94 ~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
|||+|.+....|.+. |+.+-.+..+.
T Consensus 32 ~Cp~C~~ak~~L~~~-------gi~~~~~dI~~ 57 (109)
T 3ipz_A 32 MCGFSNTVVQILKNL-------NVPFEDVNILE 57 (109)
T ss_dssp SSHHHHHHHHHHHHT-------TCCCEEEEGGG
T ss_pred CChhHHHHHHHHHHc-------CCCcEEEECCC
Confidence 999999877777653 66666666543
|
| >3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A | Back alignment and structure |
|---|
Probab=86.91 E-value=0.73 Score=35.52 Aligned_cols=42 Identities=17% Similarity=0.014 Sum_probs=31.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH-HHHHHHHHh-cCcEEEEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL-NEKIDEFHK-IGAEVVGVS 123 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l-~~l~~~~~~-~~~~vl~Vs 123 (247)
.++++|+.|+ ..-||+|....+.+ .++.++|.+ .++.++...
T Consensus 10 ~a~~~i~~f~-D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~ 53 (186)
T 3bci_A 10 NGKPLVVVYG-DYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVN 53 (186)
T ss_dssp -CCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEE
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEe
Confidence 3577888888 99999999999998 567777753 246666553
|
| >2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.61 E-value=1.9 Score=30.49 Aligned_cols=41 Identities=7% Similarity=-0.027 Sum_probs=23.6
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
|+.|. .++||.|..- .+-+++.+-+.++++.+..|..+...
T Consensus 10 V~vy~-~~~C~~C~~~-~~~~~ak~~L~~~gi~y~~vdI~~~~ 50 (111)
T 2ct6_A 10 IRVFI-ASSSGFVAIK-KKQQDVVRFLEANKIEFEEVDITMSE 50 (111)
T ss_dssp EEEEE-CSSCSCHHHH-HHHHHHHHHHHHTTCCEEEEETTTCH
T ss_pred EEEEE-cCCCCCcccc-hhHHHHHHHHHHcCCCEEEEECCCCH
Confidence 45566 8999999930 00011222233457888888877543
|
| >3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=86.03 E-value=0.57 Score=36.53 Aligned_cols=41 Identities=12% Similarity=-0.001 Sum_probs=32.0
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEe
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVS 123 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs 123 (247)
++++|+.|. .-.||+|.+..+.+.++.+++....++++.-.
T Consensus 14 a~vtiv~f~-D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~ 54 (182)
T 3gn3_A 14 GPRLFEVFL-EPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRL 54 (182)
T ss_dssp CSEEEEEEE-CTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEE
T ss_pred CCEEEEEEE-CCCCHhHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 577888888 99999999999999888777622257777654
|
| >3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A | Back alignment and structure |
|---|
Probab=85.24 E-value=0.85 Score=36.06 Aligned_cols=44 Identities=14% Similarity=-0.072 Sum_probs=33.0
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHH-HHHHHHHHh-cCcEEEEEeC
Q psy15453 80 YRGKYLVFFFYPLDFTFVCPTEVLAL-NEKIDEFHK-IGAEVVGVSV 124 (247)
Q Consensus 80 ~~gk~vvl~F~~a~~Cp~C~~~~~~l-~~l~~~~~~-~~~~vl~Vs~ 124 (247)
-.++++|+.|+ .-.||+|....+.+ ..+.++|.+ ..+.++....
T Consensus 27 ~~a~vtvvef~-D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~ 72 (202)
T 3gha_A 27 DDAPVTVVEFG-DYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNV 72 (202)
T ss_dssp TTCSEEEEEEE-CTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEEC
T ss_pred CCCCEEEEEEE-CCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEec
Confidence 35788999999 99999999988887 456666753 3577776654
|
| >2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19 | Back alignment and structure |
|---|
Probab=84.67 E-value=3.1 Score=34.66 Aligned_cols=38 Identities=24% Similarity=0.169 Sum_probs=27.2
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 84 YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 84 ~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
..|..|. ..+||+|+..-..|.++..++ ++..+.+..+
T Consensus 44 ~~VelyT-s~gCp~C~~Ak~lL~~~~~~~---~vi~l~~~v~ 81 (270)
T 2axo_A 44 GVVELFT-SQGCASCPPADEALRKMIQKG---DVVGLSYHVD 81 (270)
T ss_dssp CEEEEEE-CTTCTTCHHHHHHHHHHHHHT---SSEEEEEECS
T ss_pred cEEEEEe-CCCCCChHHHHHHHHHhhccC---CeeeEEEEEE
Confidence 4555566 999999999988888886543 5655565543
|
| >1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A | Back alignment and structure |
|---|
Probab=82.54 E-value=2.4 Score=28.63 Aligned_cols=34 Identities=6% Similarity=-0.095 Sum_probs=21.6
Q ss_pred EEEEEeCCCCCCcH------HHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 86 VFFFYPLDFTFVCP------TEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 86 vl~F~~a~~Cp~C~------~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
|+.|. .++||.|. +...- +.++|+.+-.+..+..
T Consensus 4 v~ly~-~~~C~~c~~~~~~~~ak~~-------L~~~~i~~~~~di~~~ 43 (93)
T 1t1v_A 4 LRVYS-TSVTGSREIKSQQSEVTRI-------LDGKRIQYQLVDISQD 43 (93)
T ss_dssp EEEEE-CSSCSCHHHHHHHHHHHHH-------HHHTTCCCEEEETTSC
T ss_pred EEEEE-cCCCCCchhhHHHHHHHHH-------HHHCCCceEEEECCCC
Confidence 45566 99999994 33322 2345777777777653
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=82.09 E-value=18 Score=32.54 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=67.4
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk-~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
....+|..+|+.-+. .+|+.+++-|+-|. .+||.+- .. ..-.....++.+++ ++.+-.+....
T Consensus 418 ~~~~pG~r~p~~~l~----~~~~~~~~~dl~g~~f~ll~~~-~~-----~~~~~~~~~~~~~~---~~~~~~~~~~~--- 481 (535)
T 3ihg_A 418 PSGRPGFRGPHVLVS----RHGERLSTVDLFGDGWTLLAGE-LG-----ADWVAAAEAVSAEL---GVPVRAYRVGA--- 481 (535)
T ss_dssp CCCCTTSBCCCCEEE----ETTEEEEGGGGCSSSEEEEECT-TC-----HHHHHHHHHHHHHH---TCCEEEEEBTT---
T ss_pred CCCCCCCcCCCceee----cCCceeeHHHhcCCceEEEecC-Cc-----cHHHHHHHHHHHhc---CCceEEEEeCC---
Confidence 346889999999863 26788999888776 7777542 11 11111222233333 54433333322
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
+ +.|..+.+.+.|++.. ...+||-|||.|.+..... . ......+.
T Consensus 482 ---------------------~-----~~d~~~~~~~~~~~~~-------~~~~lvRPD~~va~r~~~~-~-~~~~~~l~ 526 (535)
T 3ihg_A 482 ---------------------G-----LTDPESAVSERYGIGK-------AGASLVRPDGIVAWRTDEA-A-ADAAQTLE 526 (535)
T ss_dssp ---------------------T-----BBCSSCCHHHHHTCTT-------TCEEEECTTSBEEEEESSC-C-SSHHHHHH
T ss_pred ---------------------c-----cccCcchHHHHhCCCC-------CceEeeCCCceeEEecCCC-C-CCHHHHHH
Confidence 1 3466778899998862 3589999999999997332 1 22234444
Q ss_pred HHHHhh
Q psy15453 210 RLVRAF 215 (247)
Q Consensus 210 ~~l~~l 215 (247)
+.|.++
T Consensus 527 ~~~~~~ 532 (535)
T 3ihg_A 527 GVLRRV 532 (535)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A* | Back alignment and structure |
|---|
Probab=82.00 E-value=1.6 Score=35.12 Aligned_cols=42 Identities=5% Similarity=-0.040 Sum_probs=32.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH-HHHHHHHHh-cCcEEEEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL-NEKIDEFHK-IGAEVVGVS 123 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l-~~l~~~~~~-~~~~vl~Vs 123 (247)
.++++|+.|+ ...||+|....+.+ .++.++|.+ ..+.++...
T Consensus 38 ~A~vtIvef~-Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~ 81 (226)
T 3f4s_A 38 KAPILMIEYA-SLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRH 81 (226)
T ss_dssp TCSEEEEEEE-CTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEE
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEe
Confidence 4688899999 99999999998875 677778853 346666554
|
| >3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=80.90 E-value=2.4 Score=33.59 Aligned_cols=46 Identities=9% Similarity=-0.036 Sum_probs=33.7
Q ss_pred cCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHH-HHH-hcCcEEEEEe
Q psy15453 77 LTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKID-EFH-KIGAEVVGVS 123 (247)
Q Consensus 77 l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~-~~~-~~~~~vl~Vs 123 (247)
+.+-.++++|+.|. ---||+|++..+.+....+ +|. ...+.++...
T Consensus 10 ~G~~~a~vtivef~-D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~ 57 (205)
T 3gmf_A 10 LGNPAAKLRLVEFV-SYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRN 57 (205)
T ss_dssp ESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEE
T ss_pred ecCCCCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHhccCCeEEEEEEe
Confidence 44445788899999 9999999999988866555 773 3346666554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 247 | ||||
| d1uula_ | 194 | c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi | 7e-61 | |
| d1qmva_ | 197 | c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredox | 1e-59 | |
| d1zyea1 | 158 | c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) | 3e-49 | |
| d1n8ja_ | 186 | c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC | 4e-49 | |
| d2h01a1 | 170 | c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thio | 1e-48 | |
| d1e2ya_ | 167 | c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi | 1e-44 | |
| d1zofa1 | 170 | c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {He | 2e-43 | |
| d1prxa_ | 220 | c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sa | 3e-43 | |
| d2zcta1 | 237 | c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum perni | 6e-42 | |
| d1xcca_ | 219 | c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoe | 2e-40 | |
| d1we0a1 | 166 | c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase | 2e-40 | |
| d2bmxa1 | 169 | c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase | 2e-26 | |
| d1q98a_ | 164 | c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus i | 5e-18 | |
| d1psqa_ | 163 | c.47.1.10 (A:) Probable thiol peroxidase PsaD {Str | 1e-15 | |
| d1qxha_ | 164 | c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia c | 4e-15 | |
| d2cx4a1 | 160 | c.47.1.10 (A:4-163) Bacterioferritin comigratory p | 3e-14 | |
| d1xvwa1 | 153 | c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c | 2e-13 | |
| d1hd2a_ | 161 | c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapien | 1e-12 | |
| d1xvqa_ | 166 | c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium | 8e-12 | |
| d1nm3a2 | 163 | c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybr | 3e-10 | |
| d2a4va1 | 156 | c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's y | 2e-09 | |
| d2b7ka1 | 169 | c.47.1.10 (A:111-279) Thioredoxin-like protein Sco | 2e-07 | |
| d1jfua_ | 176 | c.47.1.10 (A:) Membrane-anchored thioredoxin-like | 2e-06 | |
| d1wp0a1 | 160 | c.47.1.10 (A:138-297) Thioredoxin-like protein Sco | 6e-06 | |
| d1tp9a1 | 162 | c.47.1.10 (A:1-162) Plant peroxiredoxin {Western b | 1e-05 | |
| d2b5xa1 | 143 | c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase | 2e-04 | |
| d1lu4a_ | 134 | c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc | 6e-04 | |
| d1o73a_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei | 0.001 | |
| d1xzoa1 | 172 | c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 | 0.001 |
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Score = 188 bits (477), Expect = 7e-61
Identities = 92/195 (47%), Positives = 131/195 (67%), Gaps = 7/195 (3%)
Query: 52 NAVVMKPAPYWKGTAVV-DGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKID 110
A + PAP + TA++ +G K++ LT Y+GK+LV FFYP+DFTFVCPTE+ ++++
Sbjct: 2 EAEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVK 61
Query: 111 EFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGV 170
EF IG EV+ S+DS ++H AW + +K L + N P+L+D T I + YGV
Sbjct: 62 EFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNI------PILADKTKCIMKSYGV 115
Query: 171 YLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQ 230
E+ G + RGLFIID + +RQIT+NDLPVGR V+E LRLV+AFQ+ ++HGE CP+ W+
Sbjct: 116 LKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQFVEKHGEVCPANWK 175
Query: 231 PGQRTISNREEDEKE 245
PG +T+ E KE
Sbjct: 176 PGDKTMKPDPEKSKE 190
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Score = 184 bits (469), Expect = 1e-59
Identities = 119/194 (61%), Positives = 150/194 (77%), Gaps = 6/194 (3%)
Query: 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDE 111
NA + KPAP +K TAVVDG KE+KL+DY+GKY+V FFYPLDFTFVCPTE++A + + ++
Sbjct: 4 NARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAED 63
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVY 171
F K+G EV+GVSVDS FTH AWIN+ +K+ L L IPLL+D+T +S DYGV
Sbjct: 64 FRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGP------LNIPLLADVTRRLSEDYGVL 117
Query: 172 LEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQP 231
D+G + RGLFIID +G++RQIT+NDLPVGRSV+E LRLV+AFQYTDEHGE CP+GW+P
Sbjct: 118 KTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKP 177
Query: 232 GQRTISNREEDEKE 245
G TI +D KE
Sbjct: 178 GSDTIKPNVDDSKE 191
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Score = 157 bits (397), Expect = 3e-49
Identities = 102/163 (62%), Positives = 126/163 (77%), Gaps = 6/163 (3%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG 116
+ APY+KGTAVV G KEI L D++GKYLV FFYPLDFTFVCPTE++A ++K EFH +
Sbjct: 1 QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN 60
Query: 117 AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG 176
EVV VSVDSHF+H AWIN+ +K+ L N I LLSDLT +ISRDYGV LE G
Sbjct: 61 CEVVAVSVDSHFSHLAWINTPRKNGGLGHMN------IALLSDLTKQISRDYGVLLEGPG 114
Query: 177 HSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTD 219
+LRGLFIID G+++ +++NDLPVGRSVEETLRLV+AFQ+ +
Sbjct: 115 LALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVE 157
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Score = 158 bits (399), Expect = 4e-49
Identities = 62/185 (33%), Positives = 103/185 (55%), Gaps = 10/185 (5%)
Query: 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEF 112
+++ +K A +G E+ D G++ VFFFYP DFTFV PTE+ + + +E
Sbjct: 1 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEEL 60
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYL 172
K+G +V VS D+HFTH+AW + + K+K ++ D T ++R++
Sbjct: 61 QKLGVDVYSVSTDTHFTHKAWHS---------SSETIAKIKYAMIGDPTGALTRNFDNMR 111
Query: 173 EDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEH-GEACPSGWQP 231
ED+G + R F++D +GI++ I + +GR + LR ++A QY H GE CP+ W+
Sbjct: 112 EDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKE 171
Query: 232 GQRTI 236
G+ T+
Sbjct: 172 GEATL 176
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Score = 156 bits (394), Expect = 1e-48
Identities = 71/176 (40%), Positives = 112/176 (63%), Gaps = 9/176 (5%)
Query: 59 APYWKGTAVV-DGNIKEIKLTDYRG-KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG 116
AP +K AV D E+ L+D+ G KY++ +FYPLDFTFVCP+E++AL++ +D F +
Sbjct: 2 APSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN 61
Query: 117 AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG 176
E++G SVDS FTH AW + + K L+SD++ I+R Y V +
Sbjct: 62 VELLGCSVDSKFTHLAWKKTPLSQGGIGNI------KHTLISDISKSIARSYDVLFNE-S 114
Query: 177 HSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPG 232
+LR +ID++G+V+ + +N+L +GRSV+E LRL+ A Q+ +++G+ CP+ WQ G
Sbjct: 115 VALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYGDVCPANWQKG 170
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Score = 145 bits (367), Expect = 1e-44
Identities = 75/172 (43%), Positives = 109/172 (63%), Gaps = 7/172 (4%)
Query: 52 NAVVMKPAPYWKGTAVV-DGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKID 110
A + PAP + A++ +G K++ L+ Y+GKY+V FFYP+DFTFVCPTE++ ++
Sbjct: 2 AAKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAK 61
Query: 111 EFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGV 170
F +I EV+ S DS ++H W + +K L P+L+D T I+R YGV
Sbjct: 62 RFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAI------PMLADKTKAIARAYGV 115
Query: 171 YLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHG 222
ED G + RG+FIID G +RQI +ND+P+GR+VEE +RLV A Q+ +EHG
Sbjct: 116 LDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVEEHG 167
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Score = 142 bits (359), Expect = 2e-43
Identities = 73/176 (41%), Positives = 111/176 (63%), Gaps = 10/176 (5%)
Query: 54 VVMKPAPYWKGTAVVDGN--IKEIKLTDYRGKY-LVFFFYPLDFTFVCPTEVLALNEKID 110
VV K AP +K AV+ N + +L+ GK ++ FF+P DFTFVCPTE++A ++++
Sbjct: 2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVK 61
Query: 111 EFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGV 170
+FH+ G V+GVS+DS H AW N+ + + + + P+++D+T ISRDY V
Sbjct: 62 DFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQ------VSFPMVADITKSISRDYDV 115
Query: 171 YLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACP 226
E+ +LRG F+ID+ VR +NDLP+GR+ +E LR+V A + +EHGE CP
Sbjct: 116 LFEEAI-ALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCP 170
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Score = 143 bits (362), Expect = 3e-43
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 17/199 (8%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRG-KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI 115
AP ++ V I+ D+ G + + F +P DFT VC TE+ + EF K
Sbjct: 5 DVAPNFEANTTV----GRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR 60
Query: 116 GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK 175
+++ +S+DS H AW + NS + +KL P++ D E++ G+ +
Sbjct: 61 NVKLIALSIDSVEDHLAWSKDINAYNSEEPT---EKLPFPIIDDRNRELAILLGMLDPAE 117
Query: 176 G------HSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGW 229
+ R +F+ + ++ L GR+ +E LR+V + Q T E A P W
Sbjct: 118 KDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDW 177
Query: 230 QPGQRTI---SNREEDEKE 245
+ G + + EE+ K+
Sbjct: 178 KDGDSVMVLPTIPEEEAKK 196
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Score = 141 bits (355), Expect = 6e-42
Identities = 50/178 (28%), Positives = 94/178 (52%), Gaps = 9/178 (5%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG 116
+ P + T G IK +GK+ V F +P DFT VC TE ++ + ++F ++G
Sbjct: 5 ERFPEMEVTTD-HGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG 63
Query: 117 AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG 176
+++G+SVDS F+H W +++ ++ P+++D ++R G+ +
Sbjct: 64 VDLIGLSVDSVFSHIKWKEWIERHIG-------VRIPFPIIADPQGTVARRLGLLHAESA 116
Query: 177 H-SLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPGQ 233
++RG+FI+D G++R + + +GR V+E LR+V+A + D A P+ W +
Sbjct: 117 THTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNE 174
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 219 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Score = 136 bits (344), Expect = 2e-40
Identities = 47/203 (23%), Positives = 90/203 (44%), Gaps = 18/203 (8%)
Query: 55 VMKPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH 113
+ P + A G + +L Y + + F +P DFT VC TE+ L + ++F
Sbjct: 4 LGATFPNFTAKAS--GIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFL 61
Query: 114 KIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLE 173
K+ +++G S +S +H W +K +L+K +IP++ D + E++ + E
Sbjct: 62 KLNCKLIGFSCNSKESHDKW------IEDIKYYGKLNKWEIPIVCDESRELANKLKIMDE 115
Query: 174 DK------GHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPS 227
+ + R LF I E ++ L GR+ E LR++++ Q T A P
Sbjct: 116 QEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQLTYTTPVATPV 175
Query: 228 GWQPGQRTI---SNREEDEKEEL 247
W G + + ++++ +
Sbjct: 176 NWNEGDKCCVIPTLQDDEISKHF 198
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Score = 135 bits (339), Expect = 2e-40
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 11/175 (6%)
Query: 53 AVVMKPAPYWKGTAVVDGN-IKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDE 111
+++ ++ A G E+ D +GK+ + FYP DF+FVCPTE+ + ++ E
Sbjct: 1 SLIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAE 60
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVY 171
K+G EV VS D+HF H+AW + ++ ++ D + ISR + V
Sbjct: 61 LKKLGVEVYSVSTDTHFVHKAWHE---------NSPAVGSIEYIMIGDPSQTISRQFDVL 111
Query: 172 LEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEH-GEAC 225
E+ G + RG FIID +G+++ I +N +GR + V+A QY E+ GE C
Sbjct: 112 NEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYVRENPGEVC 166
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 99.0 bits (245), Expect = 2e-26
Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 22/172 (12%)
Query: 57 KPAPYWKGTAVVDGNI------------KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLA 104
P ++ TA++ G++ I ++ GK+ V FF+P DFTFVCPTE+ A
Sbjct: 7 DQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAA 66
Query: 105 LNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI 164
++ DEF A+++GVS+DS F H W L P+LSD+ E+
Sbjct: 67 FSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLK---------TLPFPMLSDIKREL 117
Query: 165 SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216
S+ GV D G + R FI+D ++ ++ VGR+V+E LR++ A Q
Sbjct: 118 SQAAGVLNAD-GVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ 168
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Score = 76.4 bits (187), Expect = 5e-18
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 19/147 (12%)
Query: 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK 114
V + + +V ++ ++ L D+ K V +P T VC T V N++ +
Sbjct: 18 VGEIVENFI---LVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN 74
Query: 115 IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLED 174
V+ +S D F + + +N+ + H + GV ++
Sbjct: 75 --TIVLCISADLPFAQARFCGAEGIENAKTVSTFRN-----------HALHSQLGVDIQT 121
Query: 175 KG---HSLRGLFIIDREGIVRQITLND 198
+ R + ++D + V L +
Sbjct: 122 GPLAGLTSRAVIVLDEQNNVLHSQLVE 148
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Score = 70.3 bits (171), Expect = 1e-15
Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 17/161 (10%)
Query: 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK 114
V A + + ++ + L D+ GK V P T +C T+ NE++
Sbjct: 18 VGDKALDFS---LTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDN 74
Query: 115 IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLED 174
V+ VS+D F + W + DN++ + H RDY + + +
Sbjct: 75 T--VVLTVSMDLPFAQKRWCGAEGLDNAIMLSD-----------YFDHSFGRDYALLINE 121
Query: 175 KGHSLRGLFIIDREGIVRQITL-NDLPVGRSVEETLRLVRA 214
R +F++D + +R + +++ + E + +A
Sbjct: 122 WHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Score = 68.7 bits (167), Expect = 4e-15
Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 20/161 (12%)
Query: 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK 114
A + +V ++ ++ L + GK V +P T VC V N+ E
Sbjct: 20 AGSKAQTFT---LVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEIDN 76
Query: 115 IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLED 174
V+ +S D F + + +N + + E + YGV + D
Sbjct: 77 --TVVLCISADLPFAQSRFCGAEGLNNVITLS-----------TFRNAEFLQAYGVAIAD 123
Query: 175 KG---HSLRGLFIIDREGIVRQITL-NDLPVGRSVEETLRL 211
+ R + +ID V L +++ E L +
Sbjct: 124 GPLKGLAARAVVVIDENDNVIFSQLVDEITTEPDYEAALAV 164
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Score = 66.2 bits (160), Expect = 3e-14
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 23/169 (13%)
Query: 55 VMKPAPYWKGTAVVDGNIKEIKLTDY--RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEF 112
+ + AP + + + + + + L + RG+ V F+P F+ VC E+ +K+ +
Sbjct: 4 LGEKAPDFT---LPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQL 60
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYL 172
K AEV+ +SVDS + + + + ++L LLSD E+ + Y VY
Sbjct: 61 EKANAEVLAISVDSPWCLKKFKDE-------------NRLAFNLLSDYNREVIKLYNVYH 107
Query: 173 ED----KGHSLRGLFIIDREGIVRQITLNDLPVGR-SVEETLRLVRAFQ 216
ED K + R +FI+ +G V + D P+ +E +R
Sbjct: 108 EDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA 156
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 64.0 bits (154), Expect = 2e-13
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 19/163 (11%)
Query: 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRG-KYLVFFFYPLDFTFVCPTEVLALNEKIDEFH 113
V AP + + D N + + L YRG K ++ F+PL FT +C E+ L + + EF
Sbjct: 4 VGATAPDFT---LRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFE 60
Query: 114 KIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT--HEISRDYGVY 171
+ + +SV TH+ W PLLSD +S+ YGV+
Sbjct: 61 NDDSAALAISVGPPPTHKIWATQ-------------SGFTFPLLSDFWPHGAVSQAYGVF 107
Query: 172 LEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214
E G + RG F++DR GI+R + R + A
Sbjct: 108 NEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA 150
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.9 bits (149), Expect = 1e-12
Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 20/159 (12%)
Query: 65 TAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEK--IDEFHKIGAEVVG 121
++ L + +GK V F P FT C L + K V
Sbjct: 13 EVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVAC 72
Query: 122 VSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSL-- 179
+SV+ F W + K + K+ LL+D T ++ + L+D S+
Sbjct: 73 LSVNDAFVTGEWGRAHKAEG-----------KVRLLADPTGAFGKETDLLLDDSLVSIFG 121
Query: 180 ----RGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214
+ ++ ++GIV+ + + G + ++
Sbjct: 122 NRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQ 160
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 59.5 bits (143), Expect = 8e-12
Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 22/164 (13%)
Query: 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK 114
V PAP + + G++ I +RGK ++ +P T VC T V +E+
Sbjct: 19 VGSPAPAFT---LTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAASGA 75
Query: 115 IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLED 174
V+ VS D F + + + +N + DYGV + D
Sbjct: 76 T---VLCVSKDLPFAQKRFCGAEGTENVMPAS------------AFRDSFGEDYGVTIAD 120
Query: 175 K---GHSLRGLFIIDREGIVRQITL-NDLPVGRSVEETLRLVRA 214
G R + +I +G V L ++ + E L + A
Sbjct: 121 GPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGA 164
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Score = 55.3 bits (132), Expect = 3e-10
Identities = 16/156 (10%), Positives = 44/156 (28%), Gaps = 13/156 (8%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEV---LALNEKIDEF 112
K P ++ ++ K ++ F P FT C + + +
Sbjct: 5 KKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKK 64
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYL 172
+ + +V D+ + + ++ + T + G
Sbjct: 65 YGVDDILVVSVNDTFVMNAWKEDEKSEN---------ISFIPDGNGEFTEGMGMLVGKED 115
Query: 173 EDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEET 208
G ++ + G+V ++ + G + +
Sbjct: 116 LGFGKRSWRYSMLVKNGVVEKMFIEPNEPGDPFKVS 151
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.1 bits (126), Expect = 2e-09
Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 21/166 (12%)
Query: 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRG--KYLVFFFYPLDFTFVCPTEVLALNEKIDEF 112
+ P P +++ + I L + +VFF YP T + + E
Sbjct: 7 IGDPIPDLS---LLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQEL 63
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYL 172
+ +V KK L LLSD E G
Sbjct: 64 KEYA------AVFGLSADSVTSQ--------KKFQSKQNLPYHLLSDPKREFIGLLGAKK 109
Query: 173 EDKGHSLRGLFII-DREGIVRQITLN-DLPVGRSVEETLRLVRAFQ 216
S+R FI D + +++ ++ ++ V + +E L + F+
Sbjct: 110 TPLSGSIRSHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEKFK 155
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.1 bits (110), Expect = 2e-07
Identities = 23/159 (14%), Positives = 49/159 (30%), Gaps = 13/159 (8%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
+ D E + GK+ + +F + +CP E+ L ++ + +
Sbjct: 11 LEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFIT 70
Query: 127 HFTHRAWINSLK----------KDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG 176
R LK + D + K + T + YL D
Sbjct: 71 CDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVD-- 128
Query: 177 HSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215
+++D EG + V++ + V+++
Sbjct: 129 -HSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY 166
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Score = 44.3 bits (103), Expect = 2e-06
Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 18/158 (11%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG 116
P D + K KL+D+RGK L+ + + C E+ AL+E +
Sbjct: 34 LKLPDLAFE---DADGKPKKLSDFRGKTLLVNLWA-TWCVPCRKEMPALDELQGKLSGPN 89
Query: 117 AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG 176
EVV +++D+ + + + + ++ +D ++ +D G
Sbjct: 90 FEVVAINIDTRDPEKPKTFLKEANLT----------RLGYFNDQKAKVFQDLKAIGRALG 139
Query: 177 HSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214
+ ++D +G P + E+ L+L+RA
Sbjct: 140 --MPTSVLVDPQGCEIATIAG--PAEWASEDALKLIRA 173
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 6e-06
Identities = 21/157 (13%), Positives = 49/157 (31%), Gaps = 11/157 (7%)
Query: 68 VDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127
+ DY G++L+ +F VCP E+ + + +DE I +
Sbjct: 6 TTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFIS 65
Query: 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRG------ 181
++ + + K+ + + + +++R Y VY
Sbjct: 66 IDP--ERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDH 123
Query: 182 ---LFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215
+++I +G + G +R +
Sbjct: 124 TIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPY 160
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Score = 42.2 bits (98), Expect = 1e-05
Identities = 15/131 (11%), Positives = 38/131 (29%), Gaps = 6/131 (4%)
Query: 69 DGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127
++E+ + GK ++ F P FT C + + + K + + +
Sbjct: 21 QDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVN 80
Query: 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDR 187
+ + D + ++ G+ S R ++D
Sbjct: 81 DPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLG----TRSRRFALLVD- 135
Query: 188 EGIVRQITLND 198
+ V+ +
Sbjct: 136 DLKVKAANIEG 146
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Score = 38.4 bits (88), Expect = 2e-04
Identities = 19/140 (13%), Positives = 45/140 (32%), Gaps = 16/140 (11%)
Query: 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK 114
+ +P P G N + + K + F+ + C A+ + + K
Sbjct: 3 LRQPMPELTGEKAWL-NGEVTREQLIGEKPTLIHFW----SISCHLCKEAMPQVNEFRDK 57
Query: 115 IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLED 174
++ V+V + K+ + + D P+ D H ++ +
Sbjct: 58 YQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDI-----TQPIFVDSDHALTDAFENE--- 109
Query: 175 KGHSLRGLFIIDREGIVRQI 194
+ ++ D+ G +R
Sbjct: 110 ---YVPAYYVFDKTGQLRHF 126
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 36.9 bits (84), Expect = 6e-04
Identities = 17/138 (12%), Positives = 30/138 (21%), Gaps = 24/138 (17%)
Query: 73 KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132
+GK V +F+ T CP
Sbjct: 15 APFDGASLQGKPAVLWFW----TPWCPFCNAEAPSLSQVAAAN-----------PAVTFV 59
Query: 133 WINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVR 192
I + +++ L L+D I Y V +G
Sbjct: 60 GIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVP------WQPAFVFYRADGTST 113
Query: 193 QITLNDLPVGRSVEETLR 210
+ + P ++ L
Sbjct: 114 FV---NNPTAAMSQDELS 128
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Score = 36.5 bits (83), Expect = 0.001
Identities = 21/133 (15%), Positives = 36/133 (27%), Gaps = 19/133 (14%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG 116
K P G + E+ L GK + +F +
Sbjct: 6 KYLP---GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKN 62
Query: 117 AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG 176
EVV +S D + + + K L E+ + +GV
Sbjct: 63 FEVVLISWDEN--ESDFHDYYGKMPWLALPFDQR--------STVSELGKTFGVE----- 107
Query: 177 HSLRGLFIIDREG 189
S+ L I+ +
Sbjct: 108 -SIPTLITINADT 119
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Score = 36.5 bits (83), Expect = 0.001
Identities = 14/134 (10%), Positives = 36/134 (26%), Gaps = 8/134 (5%)
Query: 68 VDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127
+ + K + L +G+ + F + +CP + + + +V +S
Sbjct: 17 QNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD 76
Query: 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG-------HSLR 180
+ K + E + + K H
Sbjct: 77 PENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQ-S 135
Query: 181 GLFIIDREGIVRQI 194
+++ +G V +
Sbjct: 136 SFYLVGPDGKVLKD 149
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 247 | |||
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 100.0 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 100.0 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 100.0 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 100.0 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 100.0 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 100.0 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 100.0 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 100.0 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 100.0 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 100.0 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 100.0 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 99.97 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 99.97 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 99.97 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 99.96 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 99.96 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 99.96 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.95 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.95 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 99.95 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 99.95 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 99.94 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.93 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.93 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.91 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.91 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.9 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.9 | |
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.89 | |
| d1hd2a_ | 161 | Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 | 99.89 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 99.88 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.87 | |
| d1tp9a1 | 162 | Plant peroxiredoxin {Western balsam poplar(Populus | 99.84 | |
| d1nm3a2 | 163 | N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus | 99.79 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.77 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 99.76 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.75 | |
| d1xiya1 | 179 | 1-Cys peroxiredoxin {Malaria parasite (Plasmodium | 99.61 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.33 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.29 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.28 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.28 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.27 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.26 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.26 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.23 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.23 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.22 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.22 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.21 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.2 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 99.19 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.19 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.18 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.16 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.13 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.11 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.06 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.06 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.06 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 99.0 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 98.97 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 98.95 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 98.93 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 98.88 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 98.88 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 98.71 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 98.65 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 98.55 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 98.37 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 98.27 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.12 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 97.58 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 97.27 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 96.92 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 96.66 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 96.24 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 96.17 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 96.0 | |
| d1pn0a2 | 201 | Phenol hydroxylase, C-terminal domain {Soil-living | 94.5 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 91.14 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 90.75 | |
| d2axoa1 | 225 | Hypothetical protein Atu2684 {Agrobacterium tumefa | 90.27 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 90.26 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 89.57 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 89.45 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 88.37 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 87.98 | |
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 87.65 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 86.87 | |
| d1wika_ | 109 | Thioredoxin-like protein 2 {Mouse (Mus musculus) [ | 86.4 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 84.21 | |
| d1un2a_ | 195 | Disulfide-bond formation facilitator (DsbA) {Esche | 81.53 |
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=1.2e-42 Score=281.52 Aligned_cols=188 Identities=48% Similarity=0.938 Sum_probs=175.3
Q ss_pred ccCCCCCCceeeee-ecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHH
Q psy15453 54 VVMKPAPYWKGTAV-VDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132 (247)
Q Consensus 54 ~~G~~~P~f~l~~~-~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~ 132 (247)
..|.+||+|+++.+ .|++|++++|++|+||++||+|||++||++|..|++.+++++++|+++|++|++||.|+.+.+++
T Consensus 4 e~~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~ 83 (194)
T d1uula_ 4 EDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLA 83 (194)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred ccCCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhh
Confidence 56889999998763 48899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 133 WINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
|.+..+. ..++.+++|++++|+++.++++||+..+..|+..|++||||++|+|+++++++...+++++++++.|
T Consensus 84 ~~~~~~~------~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l 157 (194)
T d1uula_ 84 WTSIERK------RGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLV 157 (194)
T ss_dssp HHHSCGG------GTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHH
T ss_pred hhhhhhh------hccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHH
Confidence 9987755 5556678999999999999999999988888889999999999999999999999999999999999
Q ss_pred HhhhcccccCCccCCCCcCCCccccCCchhhhccC
Q psy15453 213 RAFQYTDEHGEACPSGWQPGQRTISNREEDEKEEL 247 (247)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (247)
++||...++++.||++|+||+.+|.+.....+||+
T Consensus 158 ~alQ~~~~~~~~cp~~W~~g~~~~~p~~~~~~~~~ 192 (194)
T d1uula_ 158 KAFQFVEKHGEVCPANWKPGDKTMKPDPEKSKEYF 192 (194)
T ss_dssp HHHHHHHHHSCBBCTTCCTTSCCBCSSTGGGHHHH
T ss_pred HHhhhHhhcCCCcCCCCCCCCccccCCHHHHHHHh
Confidence 99999999999999999999999999988888874
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-42 Score=280.47 Aligned_cols=189 Identities=63% Similarity=1.118 Sum_probs=178.7
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHR 131 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~ 131 (247)
.+++|+++|+|+++++.|++|+.++|++++||++||+|||+.|||+|..|+..|++++++|++.|+++++||.|+.++++
T Consensus 4 ~~~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~ 83 (197)
T d1qmva_ 4 NARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHL 83 (197)
T ss_dssp TBCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred CCcCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHH
Confidence 57899999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHH
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRL 211 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~ 211 (247)
+|.++... ..+..+++||+++|+++.+++.||+.....|+..|++||||++|+|++++.++.+.+++.+++++.
T Consensus 84 ~~~~~~~~------~~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~ 157 (197)
T d1qmva_ 84 AWINTPRK------EGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRL 157 (197)
T ss_dssp HHHTSCGG------GTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHH
T ss_pred hhhcchhh------hcCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHH
Confidence 99987755 566667899999999999999999998877888999999999999999999999999999999999
Q ss_pred HHhhhcccccCCccCCCCcCCCccccCCchhhhcc
Q psy15453 212 VRAFQYTDEHGEACPSGWQPGQRTISNREEDEKEE 246 (247)
Q Consensus 212 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (247)
|+++|...++++.||++|+||+.+|.+..++.+++
T Consensus 158 l~alq~~~~~g~~cp~~W~pG~~~~~p~~~~~~~~ 192 (197)
T d1qmva_ 158 VQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEY 192 (197)
T ss_dssp HHHHHHHHHHCCBBCTTCCTTSCCBCSSHHHHHHH
T ss_pred HHhhccccccCcCcCCCCCCCCccccCCHHHHHHh
Confidence 99999999999999999999999999998887775
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.6e-40 Score=266.97 Aligned_cols=182 Identities=35% Similarity=0.678 Sum_probs=168.6
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHH
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAW 133 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~ 133 (247)
.+|+++|+|+++++.|++.+.++|++|+||++||+|||+.|||+|..|++.+++.+++|++.|+++++||.|+.+++++|
T Consensus 2 lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f 81 (186)
T d1n8ja_ 2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAW 81 (186)
T ss_dssp CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHH
T ss_pred CCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHH
Confidence 47999999999988888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVR 213 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~ 213 (247)
.++... ...++|++++|+++.+++.||+..+..|...|++||||++|+|+++++++...+++++++++.|+
T Consensus 82 ~~~~~~---------~~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lk 152 (186)
T d1n8ja_ 82 HSSSET---------IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIK 152 (186)
T ss_dssp HHHCTT---------GGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHH
T ss_pred hccccc---------cccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHH
Confidence 987532 23579999999999999999999887788899999999999999999899999999999999999
Q ss_pred hhhccccc-CCccCCCCcCCCccccCCchhhh
Q psy15453 214 AFQYTDEH-GEACPSGWQPGQRTISNREEDEK 244 (247)
Q Consensus 214 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 244 (247)
+||.++++ ++.||+||.||+.+|.+.+...+
T Consensus 153 aLQ~~~~~~g~~~p~~W~~g~~~~~~~~~~~~ 184 (186)
T d1n8ja_ 153 AAQYVAAHPGEVCPAKWKEGEATLAPSLDLVG 184 (186)
T ss_dssp HHHHHHHSTTCBBCTTCCTTSCCBCCSSTTTT
T ss_pred HHHHHHhcCCeEeCCCCCCCCceeccCchhcc
Confidence 99999987 89999999999999998876543
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9e-38 Score=256.98 Aligned_cols=180 Identities=26% Similarity=0.431 Sum_probs=160.1
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRG-KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHR 131 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~g-k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~ 131 (247)
+.+|+++|+|++++ .+|+ ++|++++| |++||+|||+.|||+|..|+..+++.+++|+++|+++++||.|+.+++.
T Consensus 1 L~VGd~APdF~l~~---~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~ 76 (220)
T d1prxa_ 1 LLLGDVAPNFEANT---TVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHL 76 (220)
T ss_dssp CCTTCBCCCCEEEE---TTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHH
T ss_pred CCCCCCCCCcEeec---CCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchh
Confidence 57899999999954 4776 99999987 7999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC------CccceeEEEEcCCCcEEEEEecCCCCCCCH
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK------GHSLRGLFIIDREGIVRQITLNDLPVGRSV 205 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~------g~~~p~~~lId~~G~v~~~~~~~~~~~~~~ 205 (247)
+|.+....-.. ..+..+++||+++|++++++++||+..++. ++..+++||||++|+|++..+++...+++.
T Consensus 77 ~~~~~~~~~~~---~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~ 153 (220)
T d1prxa_ 77 AWSKDINAYNS---EEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNF 153 (220)
T ss_dssp HHHHHHHHHTT---SCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCH
T ss_pred hhhhhhhhccc---cccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccch
Confidence 99887543111 122336899999999999999999987654 246799999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccCCccCCCCcCCCccccCC
Q psy15453 206 EETLRLVRAFQYTDEHGEACPSGWQPGQRTISNR 239 (247)
Q Consensus 206 ~~il~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 239 (247)
+|+++.|++||..++++.+||+||+||+++|.+-
T Consensus 154 dEiLr~l~alq~~~~~~~~~PanW~pGd~~~~~p 187 (220)
T d1prxa_ 154 DEILRVVISLQLTAEKRVATPVDWKDGDSVMVLP 187 (220)
T ss_dssp HHHHHHHHHHHHHHHHCEEBCTTCCTTSCEEECT
T ss_pred HHHHHHHHHHhhhhcCCcCcCCCCCCCCceecCC
Confidence 9999999999999999999999999999998763
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=6.1e-38 Score=257.22 Aligned_cols=178 Identities=26% Similarity=0.468 Sum_probs=160.1
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHR 131 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~ 131 (247)
+++|+++|+|++++. +++| .++|+++ +||++||+|||+.|||+|..|+..+++.+++|+++|+++++||.|+.+++.
T Consensus 2 i~iGd~aPdF~l~~~-~~~g-~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~ 79 (219)
T d1xcca_ 2 YHLGATFPNFTAKAS-GIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHD 79 (219)
T ss_dssp CCTTCBCCCCEECBT-TCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred CcCCCCCCCcEeecc-CCCC-cEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHHh
Confidence 679999999999643 3333 5999997 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCC------ccceeEEEEcCCCcEEEEEecCCCCCCCH
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG------HSLRGLFIIDREGIVRQITLNDLPVGRSV 205 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g------~~~p~~~lId~~G~v~~~~~~~~~~~~~~ 205 (247)
+|.++... ..+..+++||+++|+++++++.||+..++.+ ...+++||||++|+|++.+.++...+++.
T Consensus 80 ~w~~~~~~------~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~ 153 (219)
T d1xcca_ 80 KWIEDIKY------YGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNA 153 (219)
T ss_dssp HHHHHHHH------HHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCH
T ss_pred HHhhhhHh------hcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCH
Confidence 99998765 5555578999999999999999999866532 35689999999999999988899999999
Q ss_pred HHHHHHHHhhhcccccCCccCCCCcCCCccccC
Q psy15453 206 EETLRLVRAFQYTDEHGEACPSGWQPGQRTISN 238 (247)
Q Consensus 206 ~~il~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (247)
+|+++.|++||.++++++.||+||+||+++|.+
T Consensus 154 ~EiLr~l~aLQ~~~~~~~~~PanW~~G~~~~~~ 186 (219)
T d1xcca_ 154 HEILRVLKSLQLTYTTPVATPVNWNEGDKCCVI 186 (219)
T ss_dssp HHHHHHHHHHHHHHHSSEEBCTTCCTTSCEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCcCCCCCCCCceeeC
Confidence 999999999999999999999999999998754
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=3.7e-36 Score=249.32 Aligned_cols=176 Identities=31% Similarity=0.629 Sum_probs=154.8
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCC---CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhH
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDY---RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTH 130 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~---~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~ 130 (247)
.+|+++|+|+++ +.+|+ ++++++ +||++||+|||+.|||+|..|++.+++++++|+++|+++|+||.|+.+++
T Consensus 2 lIGd~aPdF~l~---t~~G~-i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh 77 (237)
T d2zcta1 2 LIGERFPEMEVT---TDHGV-IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSH 77 (237)
T ss_dssp CTTSBCCCEEEE---ETTEE-EEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred CCCCCCCCeEEE---cCCCC-EEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHH
Confidence 489999999995 44774 777765 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCC-ccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG-HSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g-~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
++|.+.... ..+ .+++|++++|+++.+++.||+...+.+ ...|++||||++|+|++++.++.+.+++.+++|
T Consensus 78 ~~w~~~~~~------~~~-~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiL 150 (237)
T d2zcta1 78 IKWKEWIER------HIG-VRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEIL 150 (237)
T ss_dssp HHHHHHHHH------HHC-CCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHH
T ss_pred HHHhhhhhh------hcc-cccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHH
Confidence 999887643 222 378999999999999999999654443 578999999999999999989999999999999
Q ss_pred HHHHhhhcccccCCccCCCCcC----CCccccCCc
Q psy15453 210 RLVRAFQYTDEHGEACPSGWQP----GQRTISNRE 240 (247)
Q Consensus 210 ~~l~~l~~~~~~~~~~~~~~~~----~~~~~~~~~ 240 (247)
+.|++||..+++++.||+||+| |+++|.+..
T Consensus 151 r~l~aLQ~~~~~~~~~Pa~W~~~~~~g~~~~~~~~ 185 (237)
T d2zcta1 151 RIVKALKLGDSLKRAVPADWPNNEIIGEGLIVPPP 185 (237)
T ss_dssp HHHHHHHHHHHHTCBBCTTTTSBTTTBTCEECCCC
T ss_pred HHHHHHhhhccCCcCCcCCCCCCCCCCCCEEeCCC
Confidence 9999999999999999999998 999998754
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=100.00 E-value=1.6e-35 Score=234.02 Aligned_cols=163 Identities=34% Similarity=0.653 Sum_probs=146.9
Q ss_pred ccCCCCCCceeeeeec-CCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHH
Q psy15453 54 VVMKPAPYWKGTAVVD-GNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d-~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~ 132 (247)
.+|+++|+|+++++.+ .++++++|++|+||++||+|||+.|||+|+.|++.|++++++|+++|+++++||.|+.+++++
T Consensus 2 lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~ 81 (166)
T d1we0a1 2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKA 81 (166)
T ss_dssp CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHH
T ss_pred CCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHH
Confidence 4799999999987654 467889999999999999999889999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 133 WINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
|.++... .+ +++|++++|+++.+.++||+.....++..|++||||++|+|+++++++.+..++.+++++.|
T Consensus 82 ~~~~~~~------~~---~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~l 152 (166)
T d1we0a1 82 WHENSPA------VG---SIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKV 152 (166)
T ss_dssp HHHSCHH------HH---TCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHH
T ss_pred Hhhhhhh------hc---ccccccccCcccHHHHHhCCCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHH
Confidence 9886432 11 57999999999999999999877778889999999999999999988888888899999999
Q ss_pred Hhhhccccc-CCcc
Q psy15453 213 RAFQYTDEH-GEAC 225 (247)
Q Consensus 213 ~~l~~~~~~-~~~~ 225 (247)
++++.+.++ |+.|
T Consensus 153 kal~~~~~~~g~~c 166 (166)
T d1we0a1 153 KAAQYVRENPGEVC 166 (166)
T ss_dssp HHHHHHHTSTTCCC
T ss_pred HhcchhhhcCCCCC
Confidence 999998887 6666
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=100.00 E-value=1.2e-35 Score=235.70 Aligned_cols=168 Identities=42% Similarity=0.872 Sum_probs=152.2
Q ss_pred CCCCceeeeee-cCCceeEEcCCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHH
Q psy15453 58 PAPYWKGTAVV-DGNIKEIKLTDYRG-KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWIN 135 (247)
Q Consensus 58 ~~P~f~l~~~~-d~~G~~v~l~~~~g-k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~ 135 (247)
+||+|+++++. |++|++++|+|++| |++||+|||+.|||+|.+|++.+++.+++|++.|+++|+||.|+.+++++|.+
T Consensus 1 kAPdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~ 80 (170)
T d2h01a1 1 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKK 80 (170)
T ss_dssp BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHT
T ss_pred CCCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhh
Confidence 48999998754 57788999999998 79999999999999999999999999999999999999999999999999988
Q ss_pred HhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 136 SLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+... ...+.+.+|++++|+++.+.+.||+..+ .+...|++||||++|+|++.+.+..+..++.+++++.|++|
T Consensus 81 ~~~~------~~~~~~~~f~llsD~~~~~~~~ygv~~~-~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~l 153 (170)
T d2h01a1 81 TPLS------QGGIGNIKHTLISDISKSIARSYDVLFN-ESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL 153 (170)
T ss_dssp SCGG------GTCCCSCSSEEEECTTSHHHHHTTCEET-TTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred hhhh------hccccccCCceeEcCccHHHHHhCCccc-cccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence 6544 4444568999999999999999999643 35677999999999999999988888888999999999999
Q ss_pred hcccccCCccCCCCcCC
Q psy15453 216 QYTDEHGEACPSGWQPG 232 (247)
Q Consensus 216 ~~~~~~~~~~~~~~~~~ 232 (247)
+..+++++.||++|.||
T Consensus 154 q~~~~~~~~~~~~w~~g 170 (170)
T d2h01a1 154 QHHEKYGDVCPANWQKG 170 (170)
T ss_dssp HHHHHHCCCCCSSCCCC
T ss_pred hhhhhcCCccCCCCCCC
Confidence 99999999999999998
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=100.00 E-value=4.5e-35 Score=231.70 Aligned_cols=164 Identities=46% Similarity=0.904 Sum_probs=148.2
Q ss_pred cccCCCCCCceeeee-ecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHH
Q psy15453 53 AVVMKPAPYWKGTAV-VDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHR 131 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~-~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~ 131 (247)
+++|++||+|++..+ .|++|++++|++|+||++||+|||++|||+|..+++.|++++++|+++++++++||.|+.+++.
T Consensus 3 ~kvG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~ 82 (167)
T d1e2ya_ 3 AKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHL 82 (167)
T ss_dssp CCTTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred ccCCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHH
Confidence 689999999997653 5889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHH
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRL 211 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~ 211 (247)
+|..+.+. .......+|+++.|+++.+.+.|++.....|+..|++||||++|+|+++++++...+++.+++++.
T Consensus 83 ~~~~~~~~------~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~ 156 (167)
T d1e2ya_ 83 QWTSVDRK------KGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRL 156 (167)
T ss_dssp HHHHSCGG------GTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHH
T ss_pred HHHhhHHH------hcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHH
Confidence 99886544 333335799999999999999999987777888999999999999999998888888899999999
Q ss_pred HHhhhcccccC
Q psy15453 212 VRAFQYTDEHG 222 (247)
Q Consensus 212 l~~l~~~~~~~ 222 (247)
|++|+...++|
T Consensus 157 l~alq~~~~~g 167 (167)
T d1e2ya_ 157 VEALQFVEEHG 167 (167)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHhHHHhcC
Confidence 99999988764
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=1.1e-34 Score=230.09 Aligned_cols=166 Identities=45% Similarity=0.821 Sum_probs=148.5
Q ss_pred cccCCCCCCceeeeeecCC---ceeEEcCCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 53 AVVMKPAPYWKGTAVVDGN---IKEIKLTDYRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~---G~~v~l~~~~gk-~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
+.+|++||+|+++++ +++ |+.++|++++|| ++||+|||+.|||+|+.|++.+++.+++|++.|+++++||.|+.+
T Consensus 1 ~lVG~~APdF~l~~~-~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~ 79 (170)
T d1zofa1 1 MVVTKLAPDFKAPAV-LGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQ 79 (170)
T ss_dssp CCTTSBCCCCEEEEE-CTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHH
T ss_pred CCCCCcCCCcCcccc-cCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchh
Confidence 357999999999876 322 368999999987 899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHH
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEET 208 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~i 208 (247)
++.+|.+.... ...+.+.+|++++|++..+.++||+..+ .++..|++||||++|+|++.++++.+..++.+++
T Consensus 80 ~~~~~~~~~~~------~~~~~~~~~~~l~D~~~~v~~~ygv~~~-~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~ei 152 (170)
T d1zofa1 80 VHFAWKNTPVE------KGGIGQVSFPMVADITKSISRDYDVLFE-EAIALRGAFLIDKNMKVRHAVINDLPLGRNADEM 152 (170)
T ss_dssp HHHHHHTSCGG------GTCCCCCSSCEEECTTSHHHHHTTCEET-TTEECEEEEEEETTTEEEEEEEESSSCCCHHHHH
T ss_pred hHHHHHhhhhh------cccccCcccccccccccHHHHHcCCCcc-ccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHH
Confidence 99999886544 4445578999999999999999999754 3667899999999999999988888888899999
Q ss_pred HHHHHhhhcccccCCccC
Q psy15453 209 LRLVRAFQYTDEHGEACP 226 (247)
Q Consensus 209 l~~l~~l~~~~~~~~~~~ 226 (247)
++.|++|+...++++.||
T Consensus 153 L~~l~aLq~~~~~~~~~p 170 (170)
T d1zofa1 153 LRMVDALLHFEEHGEVCP 170 (170)
T ss_dssp HHHHHHHHHHHSSCCCCC
T ss_pred HHHHHHhhhHHhcCCcCc
Confidence 999999999999999998
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4e-34 Score=224.30 Aligned_cols=157 Identities=64% Similarity=1.139 Sum_probs=144.1
Q ss_pred CCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHH
Q psy15453 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINS 136 (247)
Q Consensus 57 ~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~ 136 (247)
+.||+|+++++.|++|++++|++|+||++||+|||+.|||+|..|++.+++++++|.+.|+++++||.|+.+++++|.+.
T Consensus 1 ~~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~ 80 (158)
T d1zyea1 1 QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINT 80 (158)
T ss_dssp SBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTS
T ss_pred CCCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhh
Confidence 36999999988899999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 137 LKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
... .....+++|++++|+++.+.+.||+.....|+..|++||||++|+|+++++++.+.+++.+++++.|+++|
T Consensus 81 ~~~------~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lkalq 154 (158)
T d1zyea1 81 PRK------NGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ 154 (158)
T ss_dssp CGG------GTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred hHh------hccccccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 533 22334689999999999999999999877788899999999999999999888888899999999999999
Q ss_pred ccc
Q psy15453 217 YTD 219 (247)
Q Consensus 217 ~~~ 219 (247)
.++
T Consensus 155 ~~~ 157 (158)
T d1zyea1 155 FVE 157 (158)
T ss_dssp HTT
T ss_pred hhh
Confidence 765
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1.5e-32 Score=217.52 Aligned_cols=156 Identities=37% Similarity=0.616 Sum_probs=137.9
Q ss_pred ccccCCCCCCceeeeeecC------------CceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEE
Q psy15453 52 NAVVMKPAPYWKGTAVVDG------------NIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEV 119 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~------------~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~v 119 (247)
.+++|+++|+|++++..++ .|+.++|++++||++||+|||++|||+|..+++.+.+++++|+++|+++
T Consensus 2 ~l~vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~v 81 (169)
T d2bmxa1 2 LLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQI 81 (169)
T ss_dssp BCCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEE
T ss_pred CCCCCCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccccCcce
Confidence 5789999999999776321 2379999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 120 VGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 120 l~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
++||.|+.+...+|.+.+.. ...++|++++|++++++++||+... .+...|++||||++|+|++++.++.
T Consensus 82 v~is~d~~~~~~~~~~~~~~---------~~~~~f~ll~D~~~~v~~~ygv~~~-~~~~~r~~fvID~~G~I~~~~~~~~ 151 (169)
T d2bmxa1 82 LGVSIDSEFAHFQWRAQHND---------LKTLPFPMLSDIKRELSQAAGVLNA-DGVADRVTFIVDPNNEIQFVSATAG 151 (169)
T ss_dssp EEEESSCHHHHHHHHHHCTT---------GGGCCSCEEECTTSHHHHHHTCBCT-TSSBCEEEEEECTTSBEEEEEEECT
T ss_pred eeccccchhhhhhhcccccc---------cccceEEEEeccHHHHHHHcCCCcc-CCccceeEEEEcCCCEEEEEEEcCC
Confidence 99999999999999887532 2257999999999999999999633 3567899999999999999998888
Q ss_pred CCCCCHHHHHHHHHhhhc
Q psy15453 200 PVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 200 ~~~~~~~~il~~l~~l~~ 217 (247)
+.+++++++++.|++|++
T Consensus 152 ~~~~~~~evl~~l~alq~ 169 (169)
T d2bmxa1 152 SVGRNVDEVLRVLDALQS 169 (169)
T ss_dssp TCCCCHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 888899999999999873
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=1.8e-31 Score=214.60 Aligned_cols=159 Identities=14% Similarity=0.246 Sum_probs=128.0
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC-----
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD----- 125 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d----- 125 (247)
..+++|+++|+|+| .|.+|+.++|++++||++||+|| ++|||+|+.++|.|++++++|++ ++.+++|+.+
T Consensus 4 p~l~vG~~aPdF~l---~d~~G~~~~Lsd~kGk~vvl~Fw-atwCp~C~~~~p~l~~l~~~y~~-~v~~v~i~snd~~~~ 78 (187)
T d2cvba1 4 PELPLESPLIDAEL---PDPRGGRYRLSQFHEPLLAVVFM-CNHCPYVKGSIGELVALAERYRG-KVAFVGINANDYEKY 78 (187)
T ss_dssp CCCCTTCBCCCCEE---ECTTSCEEEGGGCCSSEEEEEEE-CSSCHHHHTTHHHHHHHHHHTTT-TEEEEEEECCCTTTC
T ss_pred CCCCCCCccCccEe---ecCCCCEEEHHHhCCCeEEEEEe-CCCCccchhhhhhhhhhhhhccc-cceeeeeeccccccc
Confidence 46889999999999 55599999999999999999999 99999999999999999999986 6999999753
Q ss_pred ---ChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC--
Q psy15453 126 ---SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP-- 200 (247)
Q Consensus 126 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~-- 200 (247)
..+..+.+.+.. +++|+++.|+++.+.+.|++. .+|++||||++|+|+|.. ..+
T Consensus 79 ~~~~~e~~~~~~~~~-------------~~~~p~l~D~~~~~~~~~~v~------~~P~~~liD~~G~i~y~G--~idd~ 137 (187)
T d2cvba1 79 PEDAPEKMAAFAEEH-------------GIFFPYLLDETQEVAKAYRAL------RTPEVFLFDERRLLRYHG--RVNDN 137 (187)
T ss_dssp GGGSHHHHHHHHHHH-------------TCCSCEEECSSSHHHHHTTCC------EESEEEEECTTCBEEEEE--CSSSC
T ss_pred cccchHHHHHHHHHh-------------CCcceeeechhhhhccccccc------ceeeEEEEcCCCeEEEEe--eecCC
Confidence 234455555543 689999999999999999999 999999999999999874 222
Q ss_pred -------CCCCHHHHHHHHHhhhcc---cccCCccCCCCcCCCcc
Q psy15453 201 -------VGRSVEETLRLVRAFQYT---DEHGEACPSGWQPGQRT 235 (247)
Q Consensus 201 -------~~~~~~~il~~l~~l~~~---~~~~~~~~~~~~~~~~~ 235 (247)
...++.++++.|.+-... ..+..+|..+|.||..+
T Consensus 138 ~~~~~~~~~~~L~~Ai~~ll~g~~~~~~~t~~~GC~ik~~~~~~~ 182 (187)
T d2cvba1 138 PKDPSKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRPGNEP 182 (187)
T ss_dssp TTCGGGCCCCHHHHHHHHHHTTCCCCSSCCCCCSEECCCCTTCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHcCCCCCccccCCCCcceeECCCCCc
Confidence 122345555554443332 23368999999999864
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.97 E-value=1.5e-30 Score=202.38 Aligned_cols=148 Identities=30% Similarity=0.512 Sum_probs=132.9
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHR 131 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk-~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~ 131 (247)
+++|+++|+|++ .|.+|++++|++++|| ++||.||+++|||+|+.+++.|++++++++++|++|++||.|+.+.++
T Consensus 2 l~vG~~aPdF~l---~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~ 78 (153)
T d1xvwa1 2 LNVGATAPDFTL---RDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHK 78 (153)
T ss_dssp CCTTSBCCCCEE---ECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHH
T ss_pred CCCcCCCcCeEE---ECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHH
Confidence 689999999998 6779999999999995 788888779999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecC--CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDL--THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~--~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
+|.+.. +.+|+++.|. ++.+++.||+..+..|+..|++||||++|+|++.+.++....++.+++.
T Consensus 79 ~~~~~~-------------~~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~ 145 (153)
T d1xvwa1 79 IWATQS-------------GFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWT 145 (153)
T ss_dssp HHHHHH-------------TCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHH
T ss_pred HHhhhh-------------ccceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHH
Confidence 999865 5789999876 5789999999877778888999999999999999887777777889999
Q ss_pred HHHHhhh
Q psy15453 210 RLVRAFQ 216 (247)
Q Consensus 210 ~~l~~l~ 216 (247)
+.|++|+
T Consensus 146 ~~L~aL~ 152 (153)
T d1xvwa1 146 DALAALT 152 (153)
T ss_dssp HHHHHTC
T ss_pred HHHHhhc
Confidence 9998875
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.97 E-value=6.8e-31 Score=205.61 Aligned_cols=148 Identities=28% Similarity=0.467 Sum_probs=131.8
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCC--CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDY--RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTH 130 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~--~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~ 130 (247)
+++|+++|+|+| .|.+|+.++|+++ +||++||+||+++|||+|..+++.++++++++++.++.+++|+.|+++.+
T Consensus 2 i~vG~~aPdF~L---~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~ 78 (160)
T d2cx4a1 2 VELGEKAPDFTL---PNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCL 78 (160)
T ss_dssp CCTTSBCCCCEE---CCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHH
T ss_pred CcCCCCCcCeEe---ECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhh
Confidence 689999999999 5669999999998 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC----CccceeEEEEcCCCcEEEEEecCCC-CCCCH
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK----GHSLRGLFIIDREGIVRQITLNDLP-VGRSV 205 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~----g~~~p~~~lId~~G~v~~~~~~~~~-~~~~~ 205 (247)
++|.+.. +++|++++|.+..+++.||+..+.. ....|++||||++|+|++.+.+... ..+++
T Consensus 79 ~~~~~~~-------------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~ 145 (160)
T d2cx4a1 79 KKFKDEN-------------RLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDY 145 (160)
T ss_dssp HHHHHHH-------------TCSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCH
T ss_pred hhhcccc-------------eeeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCH
Confidence 9988864 6799999999999999999975432 1356899999999999999976554 45689
Q ss_pred HHHHHHHHhhh
Q psy15453 206 EETLRLVRAFQ 216 (247)
Q Consensus 206 ~~il~~l~~l~ 216 (247)
+++++.|+++.
T Consensus 146 ~eil~~l~~l~ 156 (160)
T d2cx4a1 146 DEVVREANKIA 156 (160)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999999875
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.96 E-value=4e-29 Score=196.52 Aligned_cols=151 Identities=22% Similarity=0.334 Sum_probs=128.2
Q ss_pred ccccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 48 EGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 48 ~~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
.....+++|+++|+|+| .|.+|++++|++++||++||.||++.|||+|..+++.+.+.+++++ ++.+++||.|++
T Consensus 11 l~g~~l~vG~~aPdF~L---~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d~~ 85 (163)
T d1psqa_ 11 FTGKQLQVGDKALDFSL---TTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLTVSMDLP 85 (163)
T ss_dssp CSSCCCCTTSBCCCCEE---ECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT--TEEEEEEESSCH
T ss_pred cCCCCCCCCCCCCCeEE---ECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc--ccceEEEEeccH
Confidence 44467899999999999 6679999999999999999999999999999999999999988885 799999999999
Q ss_pred HhHHHHHHHhhccccccccCCCCCcceeEEec-CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecC-CCCCCCH
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD-LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLND-LPVGRSV 205 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D-~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~-~~~~~~~ 205 (247)
+.+++|.+.... ..+..+.| .+..+.+.||+.....+...|++||||++|+|++.++.+ ....+++
T Consensus 86 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~ 153 (163)
T d1psqa_ 86 FAQKRWCGAEGL------------DNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNF 153 (163)
T ss_dssp HHHHHHHHHHTC------------TTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCH
T ss_pred HHHHHHHHHcCC------------cceeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEEEcCCCCCCCCH
Confidence 999999886522 23344444 468999999998777777778999999999999998554 4567789
Q ss_pred HHHHHHHHhh
Q psy15453 206 EETLRLVRAF 215 (247)
Q Consensus 206 ~~il~~l~~l 215 (247)
+++++.|++|
T Consensus 154 ~~il~alk~L 163 (163)
T d1psqa_ 154 EAAIAAAKAL 163 (163)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999999875
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=2.6e-29 Score=197.78 Aligned_cols=144 Identities=22% Similarity=0.283 Sum_probs=119.5
Q ss_pred ccccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 48 EGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 48 ~~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
.....+++|+++|+|+| .|.+|+.++|++|+||++||+||++.|||+|..+++.|++++.+++ ++++++||.|++
T Consensus 13 ~~g~~~~vG~~APdF~L---~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d~~ 87 (164)
T d1qxha_ 13 VANSIPQAGSKAQTFTL---VAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID--NTVVLCISADLP 87 (164)
T ss_dssp ECSCCCCTTSBCCCCEE---ECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST--TEEEEEEESSCH
T ss_pred cCCCcCCCCCCCCCeEE---ECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc--cceeeeEEcCCH
Confidence 44456899999999998 6779999999999999999999999999999999999999988764 899999999998
Q ss_pred HhHHHHHHHhhccccccccCCCCCcceeEE--ecCCchHHHHhCCcccCC---CccceeEEEEcCCCcEEEEEecC-CCC
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLL--SDLTHEISRDYGVYLEDK---GHSLRGLFIIDREGIVRQITLND-LPV 201 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~D~~~~~~~~~~~~~~~~---g~~~p~~~lId~~G~v~~~~~~~-~~~ 201 (247)
+.+++|.+. + +.+++++ .|+++.+.+.||+..... |+..|++||||++|+|++.++.. ...
T Consensus 88 ~~~~~~~~~----------~---~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~ 154 (164)
T d1qxha_ 88 FAQSRFCGA----------E---GLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLVDEITT 154 (164)
T ss_dssp HHHTTCCSS----------T---TCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTS
T ss_pred HHHHHHHHH----------h---CCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEEEcCCCCC
Confidence 887776653 2 4566655 455789999999876543 45678999999999999988654 356
Q ss_pred CCCHHHHH
Q psy15453 202 GRSVEETL 209 (247)
Q Consensus 202 ~~~~~~il 209 (247)
.++.++++
T Consensus 155 ~pd~d~~l 162 (164)
T d1qxha_ 155 EPDYEAAL 162 (164)
T ss_dssp CCCHHHHT
T ss_pred CCCHHHhh
Confidence 67777765
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.96 E-value=3.9e-28 Score=191.35 Aligned_cols=149 Identities=26% Similarity=0.346 Sum_probs=120.4
Q ss_pred ccccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 48 EGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 48 ~~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
.....+++|+++|+|+| .|.+|+.++|++|+||++||+||++.|||+|..+++.+++. +++.|++|++||.|++
T Consensus 12 ~~g~~p~iG~~aP~F~L---~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~---~~~~g~~vv~Is~d~~ 85 (166)
T d1xvqa_ 12 TVGELPAVGSPAPAFTL---TGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDER---AAASGATVLCVSKDLP 85 (166)
T ss_dssp BSSCCCCTTSBCCCCEE---ECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHH---HHHTTCEEEEEESSCH
T ss_pred cCCCCCCCcCCCCCeEE---ECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhh---cccccccccccccchH
Confidence 44456899999999999 67799999999999999999999999999999999988654 5566999999999999
Q ss_pred HhHHHHHHHhhccccccccCCCCCcceeE-EecCCchHHHHhCCcccCC---CccceeEEEEcCCCcEEEEEecC-CCCC
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPL-LSDLTHEISRDYGVYLEDK---GHSLRGLFIIDREGIVRQITLND-LPVG 202 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~D~~~~~~~~~~~~~~~~---g~~~p~~~lId~~G~v~~~~~~~-~~~~ 202 (247)
+++++|.+.. +..+.. ..|....+.+.||+..... |+..|++||||++|+|++.++.+ ....
T Consensus 86 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~ 152 (166)
T d1xvqa_ 86 FAQKRFCGAE-------------GTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQE 152 (166)
T ss_dssp HHHTTCC-------------------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCC
T ss_pred HHHHHHHHHh-------------CCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEEEcCCCCCC
Confidence 8888777643 345554 4566688999999876543 45568999999999999987544 4567
Q ss_pred CCHHHHHHHHHhh
Q psy15453 203 RSVEETLRLVRAF 215 (247)
Q Consensus 203 ~~~~~il~~l~~l 215 (247)
++++++++.|++.
T Consensus 153 ~~~d~il~aL~a~ 165 (166)
T d1xvqa_ 153 PNYEAALAALGAT 165 (166)
T ss_dssp CCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhc
Confidence 7899999999875
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.95 E-value=3e-28 Score=185.75 Aligned_cols=134 Identities=24% Similarity=0.407 Sum_probs=116.7
Q ss_pred cCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC-ChHhHHHH
Q psy15453 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD-SHFTHRAW 133 (247)
Q Consensus 55 ~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d-~~~~~~~~ 133 (247)
.|+++|+|++ .|.+|+.+++++++||++||+|| ++|||+|..+++.++++++++.++++.+++|+.+ +.++.++|
T Consensus 1 ~G~~~P~f~l---~~~~G~~~~l~~~~gk~~li~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~ 76 (137)
T d1st9a_ 1 EGSDAPNFVL---EDTNGKRIELSDLKGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNF 76 (137)
T ss_dssp CCEECCCCEE---ECTTSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHH
T ss_pred CcCcCCCeEE---ECCCcCEEeHHHhCCCEEEEEEe-eccccceeecccccccccccccccccccccccccchhhhHHHH
Confidence 4889999999 56699999999999999999999 9999999999999999999999989999999975 46677887
Q ss_pred HHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
.+++ +.+|+++.|.++.+.+.|++. .+|++||||++|+|++.+.|..+ ...++++++.|
T Consensus 77 ~~~~-------------~~~~~~~~d~~~~~~~~~~v~------~~P~~~liD~~G~i~~~~~G~~~-~~~~~~~l~~l 135 (137)
T d1st9a_ 77 MKSY-------------GVNFPVVLDTDRQVLDAYDVS------PLPTTFLINPEGKVVKVVTGTMT-ESMIHDYMNLI 135 (137)
T ss_dssp HHHT-------------TCCSCEEEETTSHHHHHTTCC------SSCEEEEECTTSEEEEEEESCCC-HHHHHHHHHHH
T ss_pred HHHc-------------CCCccccccccchhhhhhhcc------ccceEEEECCCCEEEEEEECCCC-HHHHHHHHHhh
Confidence 7754 578999999999999999998 88999999999999999988764 33345554444
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.95 E-value=7.5e-28 Score=183.06 Aligned_cols=133 Identities=16% Similarity=0.179 Sum_probs=114.4
Q ss_pred CCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC-ChHhHHHHH
Q psy15453 56 MKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD-SHFTHRAWI 134 (247)
Q Consensus 56 G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d-~~~~~~~~~ 134 (247)
|+..|+|+++ +.+|+++++++++||++||+|| ++|||+|+.++|.|++++++++ ++.+++|+.+ +.+..++|.
T Consensus 1 ~d~~~~f~~~---~~~G~~~~l~~~~Gk~vll~F~-a~wC~~C~~~~p~l~~~~~~~~--~v~~v~v~~~~~~~~~~~~~ 74 (134)
T d1lu4a_ 1 ADERLQFTAT---TLSGAPFDGASLQGKPAVLWFW-TPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFV 74 (134)
T ss_dssp CGGGGCCEEE---BTTSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHH
T ss_pred CCCCCcceeE---CCCCCEEcHHHhCCCEEEEEEe-ecccCCceecchhHHHHhhhhc--cccccccccccchhhhhhhh
Confidence 6788999995 4599999999999999999999 9999999999999999998764 8999999975 456677777
Q ss_pred HHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 135 NSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
+++ +++|+++.|+++.+.+.||+. .+|++||||++|+|++++. . ....+.+++.+.|++
T Consensus 75 ~~~-------------~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~v~~-~-~g~~~~~~l~~~l~~ 133 (134)
T d1lu4a_ 75 SKY-------------NLNFTNLNDADGVIWARYNVP------WQPAFVFYRADGTSTFVNN-P-TAAMSQDELSGRVAA 133 (134)
T ss_dssp HHH-------------TCCSEEEECTTSHHHHHTTCC------SSSEEEEECTTSCEEEECC-S-SSCCCHHHHHHHHHH
T ss_pred hhh-------------ccccceeeCchHHHHHHcCCC------cCCEEEEEeCCCeEEEEec-c-CCCCCHHHHHHHHHc
Confidence 754 679999999999999999999 8999999999999998752 2 224457888888876
Q ss_pred h
Q psy15453 215 F 215 (247)
Q Consensus 215 l 215 (247)
|
T Consensus 134 L 134 (134)
T d1lu4a_ 134 L 134 (134)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=99.95 E-value=5.9e-28 Score=189.96 Aligned_cols=147 Identities=20% Similarity=0.284 Sum_probs=122.2
Q ss_pred ccccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 48 EGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 48 ~~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
.....+++|+++|+|+| .|.+|+.++|++++||++||+||++.|||+|..|++.|++.+++|+ ++.+++||.|++
T Consensus 11 ~~g~~p~vG~~APdF~L---~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~~~vi~iS~d~~ 85 (164)
T d1q98a_ 11 VGGHFPQVGEIVENFIL---VGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISADLP 85 (164)
T ss_dssp EESCCCCTTCBCCCCEE---ECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--TEEEEEEESSCH
T ss_pred cCCCCCCCCCCCCCcEE---ECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc--cceEEeecCCcH
Confidence 34456899999999998 6779999999999999999999999999999999999999999996 799999999999
Q ss_pred HhHHHHHHHhhccccccccCCCCCc-ceeEEecC-CchHHHHhCCcccCC---CccceeEEEEcCCCcEEEEEecCC-CC
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKL-KIPLLSDL-THEISRDYGVYLEDK---GHSLRGLFIIDREGIVRQITLNDL-PV 201 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~-~~~~~~~~~~~~~~~---g~~~p~~~lId~~G~v~~~~~~~~-~~ 201 (247)
+.+++|.++. ++ .+..+.|. +..+.+.||+..... |+..|++||||++|+|++.++.+. ..
T Consensus 86 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~~~~~~~~ 152 (164)
T d1q98a_ 86 FAQARFCGAE-------------GIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKE 152 (164)
T ss_dssp HHHTTCTTTT-------------TCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTS
T ss_pred HHHHHHHHHh-------------CCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEEECCCCCC
Confidence 9988887643 33 34455543 578999999976553 456699999999999999986554 45
Q ss_pred CCCHHHHHHHH
Q psy15453 202 GRSVEETLRLV 212 (247)
Q Consensus 202 ~~~~~~il~~l 212 (247)
.++.+++++.|
T Consensus 153 epd~~~~l~~L 163 (164)
T d1q98a_ 153 EPNYEAALAVL 163 (164)
T ss_dssp CCCHHHHHHTT
T ss_pred CCCHHHHHHhh
Confidence 67888877654
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=7.7e-28 Score=187.78 Aligned_cols=148 Identities=21% Similarity=0.260 Sum_probs=121.7
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCC--CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDY--RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~--~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
..+++|+++|+|+| .|.+|+.++|+++ +|+++|++|||++|||+|..+++.+++.+++|++ ++.+++||.|+.+
T Consensus 3 ~~L~vG~~aP~f~L---~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~-~~~~~~is~d~~~ 78 (156)
T d2a4va1 3 NELEIGDPIPDLSL---LNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-YAAVFGLSADSVT 78 (156)
T ss_dssp TCCCTTCBCCSCEE---ECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT-TCEEEEEESCCHH
T ss_pred ccCCCCCCCCCeEE---ECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhh-ccceeeeccchhh
Confidence 46899999999999 5669999999999 4678888889999999999999999999999975 6779999999999
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC---CCCCH
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP---VGRSV 205 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~---~~~~~ 205 (247)
++++|.+.+ +++|++++|++++++++||+.....+. .+++++|+.+|+|++.+.+..+ ....+
T Consensus 79 ~~~~f~~~~-------------~l~f~~L~D~~~~v~~~ygv~~~~~~~-~~r~~~i~~dg~i~~~~~~~~~~~~~~~~~ 144 (156)
T d2a4va1 79 SQKKFQSKQ-------------NLPYHLLSDPKREFIGLLGAKKTPLSG-SIRSHFIFVDGKLKFKRVKISPEVSVNDAK 144 (156)
T ss_dssp HHHHHHHHH-------------TCSSEEEECTTCHHHHHHTCBSSSSSC-BCCEEEEEETTEEEEEEESCCHHHHHHHHH
T ss_pred hHHhhhccc-------------CccceeccchHHHHHHHcCCCccccCC-eeEEEEEEECCeEEEEEEEeCCCCCcchHH
Confidence 999999965 689999999999999999997543322 3344555579999999876543 22345
Q ss_pred HHHHHHHHhhh
Q psy15453 206 EETLRLVRAFQ 216 (247)
Q Consensus 206 ~~il~~l~~l~ 216 (247)
+++++.|++|+
T Consensus 145 ~evl~~lk~l~ 155 (156)
T d2a4va1 145 KEVLEVAEKFK 155 (156)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 67777777764
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.94 E-value=2.2e-26 Score=182.69 Aligned_cols=143 Identities=21% Similarity=0.286 Sum_probs=118.0
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC--ChHhH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD--SHFTH 130 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d--~~~~~ 130 (247)
...+.++|+|++ .|.+|+.++|++++||++||+|| ++||++|+.+++.++++++++.+.++.|++|+.| +++..
T Consensus 30 ~~~~~~~Pdf~l---~d~~G~~v~L~~~kGK~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~ 105 (176)
T d1jfua_ 30 ASAPLKLPDLAF---EDADGKPKKLSDFRGKTLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKP 105 (176)
T ss_dssp CCSCCBCCCCEE---ECTTSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHH
T ss_pred cCCCCcCCCeEE---ECCCcCEEeHHHhCCCEEEEEec-cCcccchHHHHHhhhhccccccccccccccccccccchhhh
Confidence 345678999999 56699999999999999999999 9999999999999999999999889999999976 45677
Q ss_pred HHHHHHhhccccccccCCCCCcc-eeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLK-IPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
+.|.+.. +.. ++++.|....+.+.|+....-. .+|++||||++|+|++.+.|+.+.. .++++
T Consensus 106 ~~~~~~~-------------~~~~~~~~~d~~~~~~~~~~~~~~v~--~~P~~~lID~~G~I~~~~~G~~~~~--~~e~~ 168 (176)
T d1jfua_ 106 KTFLKEA-------------NLTRLGYFNDQKAKVFQDLKAIGRAL--GMPTSVLVDPQGCEIATIAGPAEWA--SEDAL 168 (176)
T ss_dssp HHHHHHT-------------TCCTTCCEECTTCHHHHHHHTTTCCS--SSSEEEEECTTSBEEEEEESCCCTT--SHHHH
T ss_pred hhhHhhh-------------CCcceeeeecchhHHHHHHhhhccCC--CCCeEEEEcCCCEEEEEEECCCCCC--hHHHH
Confidence 7777754 334 4578888888877776542211 5799999999999999998877654 38999
Q ss_pred HHHHhhh
Q psy15453 210 RLVRAFQ 216 (247)
Q Consensus 210 ~~l~~l~ 216 (247)
+.|+++.
T Consensus 169 ~~l~al~ 175 (176)
T d1jfua_ 169 KLIRAAT 175 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999874
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.93 E-value=3.3e-26 Score=175.71 Aligned_cols=136 Identities=15% Similarity=0.192 Sum_probs=111.9
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC------
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS------ 126 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~------ 126 (247)
+++|+++|+|++.+- ..+|+.++++.++||++||+|| ++|||+|.+++|.|++++++|++ ++.+|+|+.+.
T Consensus 1 ~k~g~~aP~~~~~~~-~~ng~~~~~~~~~~k~vvl~f~-a~~C~~C~~~~p~l~~l~~~~~~-~~~~i~v~~~~~~~~~~ 77 (143)
T d2b5xa1 1 MKLRQPMPELTGEKA-WLNGEVTREQLIGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQD-QLNVVAVHMPRSEDDLD 77 (143)
T ss_dssp CCTTCBCCCCCCCSE-EESCCCCHHHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEECCCSTTTSS
T ss_pred CCCCCcCCCCcCCcc-CcCCeEecHHHhCCCEEEEEEE-cCCCcchhhhhhhhhhhhhhhhc-cccceeEEeeccccccc
Confidence 478999999997431 1268899999999999999999 99999999999999999999986 79999998743
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHH
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVE 206 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~ 206 (247)
.+..++|.+.+ +++||++.|.++.+.+.|++. .+|++||||++|+|++.+.|..+ .+
T Consensus 78 ~~~~~~~~~~~-------------~~~~p~~~D~~~~~~~~~~v~------~~P~~~~id~~G~i~~~~~G~~~----~~ 134 (143)
T d2b5xa1 78 PGKIKETAAEH-------------DITQPIFVDSDHALTDAFENE------YVPAYYVFDKTGQLRHFQAGGSG----MK 134 (143)
T ss_dssp HHHHHHHHHHT-------------TCCSCEEECSSCHHHHHTCCC------CSSEEEEECTTCBEEEEEESCST----TH
T ss_pred hhhhhhHHHhh-------------ccCccccccCccchHHHcCCC------cCCEEEEECCCCEEEEEEECCCC----HH
Confidence 23445666543 679999999999999999998 89999999999999999988544 24
Q ss_pred HHHHHHHh
Q psy15453 207 ETLRLVRA 214 (247)
Q Consensus 207 ~il~~l~~ 214 (247)
++.+.|++
T Consensus 135 ~l~~~l~~ 142 (143)
T d2b5xa1 135 MLEKRVNR 142 (143)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44455544
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.93 E-value=2.9e-25 Score=168.28 Aligned_cols=127 Identities=18% Similarity=0.253 Sum_probs=105.9
Q ss_pred CCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC-CChHhHHHHHHHhh
Q psy15453 60 PYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV-DSHFTHRAWINSLK 138 (247)
Q Consensus 60 P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~-d~~~~~~~~~~~~~ 138 (247)
.+|++++ .+|+++++++++||++||+|| ++|||+|++++|.|.+++++++ ++.+++|+. |.....+.+.+.+.
T Consensus 6 ~df~~~~---~~G~~~~l~~~~Gk~vll~fw-a~wC~~C~~~~p~l~~l~~~~~--~~~~v~v~~~d~~~~~~~~~~~~~ 79 (134)
T d1zzoa1 6 LQFSAKT---LDGHDFHGESLLGKPAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFVNKYP 79 (134)
T ss_dssp GCCEEEB---TTSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHTT
T ss_pred cceeEEc---CCCCEEeHHHhCCCEEEEEec-ccccCcccccchhhHHHHhhhc--ccccccccccccchhHHHHHHhcC
Confidence 4699854 499999999999999999999 9999999999999999999986 577788776 45666677777541
Q ss_pred ccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 139 KDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
...|+.+.|.++.+.+.||+. .+|++||||++|+|+++. |.. +.+++.+.|++|
T Consensus 80 ------------~~~~~~l~D~~~~~~~~~~v~------~~P~~~iiD~~G~i~~~~-g~~----~~~~l~~~i~~L 133 (134)
T d1zzoa1 80 ------------VKTFTQLADTDGSVWANFGVT------QQPAYAFVDPHGNVDVVR-GRM----SQDELTRRVTAL 133 (134)
T ss_dssp ------------CTTSEEEECTTCHHHHHTTCC------SSSEEEEECTTCCEEEEE-SCC----CHHHHHHHHHHH
T ss_pred ------------CcceeEEeeccchHHHhcCCC------ccCeEEEECCCCeEEEEE-CCC----CHHHHHHHHHhh
Confidence 246899999999999999999 899999999999998754 443 346777777766
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.91 E-value=2.6e-25 Score=170.31 Aligned_cols=129 Identities=14% Similarity=0.216 Sum_probs=106.5
Q ss_pred ecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH---hHHHHHHHhhcccccc
Q psy15453 68 VDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF---THRAWINSLKKDNSLK 144 (247)
Q Consensus 68 ~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~---~~~~~~~~~~~~~~~~ 144 (247)
.+.+|++++|++++||++||+|| |+|||+|++++|.|++++++++..++.+++|+.+... ....+.+...
T Consensus 9 ~~~~~~~~~l~~~~gk~vvl~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~------ 81 (143)
T d2fy6a1 9 KTADNRPASVYLKKDKPTLIKFW-ASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYA------ 81 (143)
T ss_dssp EETTSCBGGGGCCTTSCEEEEEE-CTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHT------
T ss_pred ECCCCCEeeHHHhCCCEEEEEEE-CCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhh------
Confidence 56699999999999999999999 9999999999999999999999889999999865321 2222222221
Q ss_pred ccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 145 KDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 145 ~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
......|+++.|.++.+.+.||+. .+|+++|||++|+|++.+.|..+ .+++.+.|+.+.
T Consensus 82 ---~~~~~~~~~~~D~~~~~~~~~~v~------~~P~~~liD~~G~i~~~~~G~~~----~~~~~~~l~~~~ 140 (143)
T d2fy6a1 82 ---GLNYPKLPVVTDNGGTIAQSLNIS------VYPSWALIGKDGDVQRIVKGSIN----EAQALALIRDPN 140 (143)
T ss_dssp ---TSCCTTSCEEECTTCHHHHHTTCC------SSSEEEEECTTSCEEEEEESCCC----HHHHHHHHHCTT
T ss_pred ---hcCCcccccccccchHHHHHcCCC------ccCEEEEECCCCEEEEEEECCCC----HHHHHHHHHHHh
Confidence 122468999999999999999998 89999999999999999877764 577777777654
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=1.8e-23 Score=165.15 Aligned_cols=148 Identities=9% Similarity=0.145 Sum_probs=114.6
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHHhc--CcEEEEEeCCCh---
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTF-VCPTEVLALNEKIDEFHKI--GAEVVGVSVDSH--- 127 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp-~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~d~~--- 127 (247)
.++.++|+|+| +|.+|+.+++++|+||++||+|| .+||| .|+.+++.|.++++++++. ++.+|+||.|+.
T Consensus 6 p~~~~~p~F~l---~d~~G~~vsl~d~~Gk~vvl~F~-~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dt 81 (172)
T d1xzoa1 6 PLNYEVEPFTF---QNQDGKNVSLESLKGEVWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDK 81 (172)
T ss_dssp CCCEECCCCEE---ECTTSCEEETGGGTTCCEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCC
T ss_pred CCCCcCCCeEE---EcCCCCEEcHHHhCCCEEEEEEe-cccccccccccchhhhhhhhhhccccccccccccccccccch
Confidence 46778999999 77799999999999999999999 99997 7999999999999999754 588999998754
Q ss_pred -HhHHHHHHHhhccccccccCCCCCcceeEEecCCchH-----HHHhCCcccCC----C-ccceeEEEEcCCCcEEEEEe
Q psy15453 128 -FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI-----SRDYGVYLEDK----G-HSLRGLFIIDREGIVRQITL 196 (247)
Q Consensus 128 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~-----~~~~~~~~~~~----g-~~~p~~~lId~~G~v~~~~~ 196 (247)
+.+++|.+ +.+....+|+++++.+... .+.|+...... . .+.+.+||||++|+|++.+.
T Consensus 82 p~~l~~y~~----------~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~ 151 (172)
T d1xzoa1 82 PKQLKKFAA----------NYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYN 151 (172)
T ss_dssp HHHHHHHHT----------TSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEE
T ss_pred HHHHHHHHH----------HhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEc
Confidence 44555544 5555566889998876443 34455543321 1 25688999999999998875
Q ss_pred cCCCCCCCHHHHHHHHHhhhc
Q psy15453 197 NDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 197 ~~~~~~~~~~~il~~l~~l~~ 217 (247)
|.. ....+++++.|+++..
T Consensus 152 g~~--~~~~~~l~~dik~~~~ 170 (172)
T d1xzoa1 152 GVE--NTPYDDIISDVKSAST 170 (172)
T ss_dssp SSS--SCCHHHHHHHHHHHTC
T ss_pred CCC--CCCHHHHHHHHHHHHh
Confidence 533 3357999999998864
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.90 E-value=2.3e-24 Score=165.39 Aligned_cols=121 Identities=17% Similarity=0.271 Sum_probs=96.4
Q ss_pred CCCCceeeee-----ecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC-hHhHH
Q psy15453 58 PAPYWKGTAV-----VDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS-HFTHR 131 (247)
Q Consensus 58 ~~P~f~l~~~-----~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~-~~~~~ 131 (247)
++|+|+++.+ .+.++..+++++++||++||+|| ++||++|+.++|.++++++++ ++++++|+.+. ..+.+
T Consensus 2 paP~~~lp~~~g~~~~~~~~~~~~~~~~kgK~vll~fw-a~wC~~C~~~~p~l~~l~~~~---~~~~~~i~~~~~~~~~~ 77 (144)
T d1knga_ 2 PAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVW-ASWCVPCHDEAPLLTELGKDK---RFQLVGINYKDAADNAR 77 (144)
T ss_dssp BCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHTTCT---TSEEEEEEESCCHHHHH
T ss_pred CCCCCCCCCCCCccccCCcCCccCHHHhCCCEEEEEee-ccccccccccCchhhhhhhcc---CceeEEEEeeechHHHH
Confidence 5666666443 22344779999999999999999 999999999999999887654 68999998755 44556
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
++.+... ...++++.|+++.+.+.|++. .+|+++|||++|+|++.+.|+.+
T Consensus 78 ~~~~~~~------------~~~~~~~~d~~~~~~~~~~v~------~~P~~~liD~~G~i~~~~~G~~~ 128 (144)
T d1knga_ 78 RFLGRYG------------NPFGRVGVDANGRASIEWGVY------GVPETFVVGREGTIVYKLVGPIT 128 (144)
T ss_dssp HHHHHHC------------CCCSEEEEETTSHHHHHTTCC------SSCEEEEECTTSBEEEEEESCCC
T ss_pred HHHHHcC------------CccccccccccchhhhhcCcc------ccceEEEEcCCCeEEEEEeCCCC
Confidence 6666541 133457889999999999999 89999999999999999887765
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=4.4e-24 Score=162.22 Aligned_cols=110 Identities=24% Similarity=0.295 Sum_probs=91.6
Q ss_pred ecCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh-HhHHHHHHHhhccccccc
Q psy15453 68 VDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH-FTHRAWINSLKKDNSLKK 145 (247)
Q Consensus 68 ~d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~-~~~~~~~~~~~~~~~~~~ 145 (247)
.|.+|+.++++++ +||++||+|| |+||++|+.++|.|++++ ++++.+++++.+.. .....+.....
T Consensus 5 ld~~g~~~~~~~l~~Gk~vvl~Fw-atWC~pC~~e~p~l~~~~----~~~~~vi~i~~~~~~~~~~~~~~~~~------- 72 (136)
T d1z5ye1 5 LDNPGQFYQADVLTQGKPVLLNVW-ATWCPTSRAEHQYLNQLS----AQGIRVVGMNYKDDRQKAISWLKELG------- 72 (136)
T ss_dssp SSSTTCEECHHHHHSSSCEEEEEE-CTTCHHHHHHHHHHHHHH----HTTCCEEEEEESCCHHHHHHHHHHHC-------
T ss_pred ccCCCcEecHHHHcCCCEEEEEEE-cCcCCCcCccccchhhhh----hhhhhhcccccccchhhhHHHHHHcC-------
Confidence 4778999999998 8999999999 999999999999998774 45899999988653 34444444321
Q ss_pred cCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 146 DNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 146 ~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
...++++.|.++.+.+.|++. .+|++||||++|+|++.+.|..+
T Consensus 73 -----~~~~~~~~d~~~~~~~~~~v~------~~P~~~liD~~G~i~~~~~G~~~ 116 (136)
T d1z5ye1 73 -----NPYALSLFDGDGMLGLDLGVY------GAPETFLIDGNGIIRYRHAGDLN 116 (136)
T ss_dssp -----CCCSEEEEESSCHHHHHHTCC------SBSEEEEECTTSCEEEEEESCCC
T ss_pred -----CccceeecccchhHHHhcccC------CcceEEEEcCCCEEEEEEEcCCC
Confidence 245567889999999999999 89999999999999999988665
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.89 E-value=9.3e-24 Score=162.09 Aligned_cols=117 Identities=21% Similarity=0.248 Sum_probs=92.8
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHH-hcCcEEEEEeCCChH-hHH
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH-KIGAEVVGVSVDSHF-THR 131 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~-~~~~~vl~Vs~d~~~-~~~ 131 (247)
.+|+.+|+|+. .+.+|..++|++++||++||+|| |+||++|+.++|.|++++++|. +.++++++|+.|... ...
T Consensus 3 ~~~k~~P~~~~---~~~~~~~v~l~~~~GK~vvl~Fw-atwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~ 78 (144)
T d1o73a_ 3 GLAKYLPGATN---LLSKSGEVSLGSLVGKTVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFH 78 (144)
T ss_dssp GGGGTSCTTCC---BBCTTSCBCSGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHH
T ss_pred CcccCCCCcee---eccCCCEEeHHHhCCCEEEEEeC-hhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHH
Confidence 35789999998 56678889999999999999999 9999999999999999999996 568999999998643 333
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecCC---chHHHHhCCcccCCCccceeEEEEcCC-CcEEEE
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDLT---HEISRDYGVYLEDKGHSLRGLFIIDRE-GIVRQI 194 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~---~~~~~~~~~~~~~~g~~~p~~~lId~~-G~v~~~ 194 (247)
++.+. . ..+.+..|.. ..+.+.|++. .+|++||||++ |+|+..
T Consensus 79 ~~~~~----------~----~~~~~~~~~~~~~~~l~~~y~v~------~~Pt~~lID~~~G~Ii~~ 125 (144)
T d1o73a_ 79 DYYGK----------M----PWLALPFDQRSTVSELGKTFGVE------SIPTLITINADTGAIIGT 125 (144)
T ss_dssp HHHTT----------C----SSEECCTTCHHHHHHHHHHHTCC------SSSEEEEEETTTCCEEES
T ss_pred HHHHh----------c----cccceeeeccchHHHHHHHcCCC------cCCEEEEEECCCCEEEee
Confidence 33331 1 1122223332 4688999999 89999999998 899864
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=7.2e-23 Score=160.07 Aligned_cols=149 Identities=21% Similarity=0.306 Sum_probs=119.0
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHHHhcCcE-EEEEeCCChH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPT-EVLALNEKIDEFHKIGAE-VVGVSVDSHF 128 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~-~~~~l~~l~~~~~~~~~~-vl~Vs~d~~~ 128 (247)
++++|+.+|+|++. .+++|+.++|+++ +||++||+|+|+.|||.|.. +++.+.+.++++.++|+. ++++|.|++.
T Consensus 2 pikVGd~aP~f~l~--~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~~~~ 79 (161)
T d1hd2a_ 2 PIKVGDAIPAVEVF--EGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAF 79 (161)
T ss_dssp CCCTTCBCCCCEEE--CSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHH
T ss_pred CCCCCCcCCCeEEE--ecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecCchh
Confidence 47899999999983 2456899999996 89999999999999999965 788899999999988874 6689999999
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCc------cceeEEEEcCCCcEEEEEecCCCCC
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGH------SLRGLFIIDREGIVRQITLNDLPVG 202 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~------~~p~~~lId~~G~v~~~~~~~~~~~ 202 (247)
.+..|.+.... ..++++++|+++++++.||+..++.+. ...++++|+++|+|+++++.+.+..
T Consensus 80 ~~~~~~~~~~~-----------~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~ve~~~~~ 148 (161)
T d1hd2a_ 80 VTGEWGRAHKA-----------EGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTG 148 (161)
T ss_dssp HHHHHHHHTTC-----------TTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSC
T ss_pred hhhhhhhhccc-----------ccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEEEeCCCCC
Confidence 99999886532 568999999999999999998766532 2355666777999999987666555
Q ss_pred CCHHHHHHHHH
Q psy15453 203 RSVEETLRLVR 213 (247)
Q Consensus 203 ~~~~~il~~l~ 213 (247)
.++....+.|+
T Consensus 149 ~~~s~a~~vL~ 159 (161)
T d1hd2a_ 149 LTCSLAPNIIS 159 (161)
T ss_dssp SSTTSHHHHHH
T ss_pred CCcCcHHHHHh
Confidence 54433333333
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=99.88 E-value=5.4e-23 Score=157.38 Aligned_cols=118 Identities=22% Similarity=0.268 Sum_probs=94.0
Q ss_pred cCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh-cCcEEEEEeCCChH-hHHH
Q psy15453 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK-IGAEVVGVSVDSHF-THRA 132 (247)
Q Consensus 55 ~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~-~~~~vl~Vs~d~~~-~~~~ 132 (247)
+|+.+|+|++ .+.+|+++++++++||++||+|| ++||++|..++|.|.+++++|.. .++++++|+.|... ....
T Consensus 2 ~~k~~P~~~~---~~~~g~~v~l~~l~GK~vll~Fw-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~ 77 (144)
T d1o8xa_ 2 LDKYLPGIEK---LRRGDGEVEVKSLAGKLVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAG 77 (144)
T ss_dssp GGGTSTTCCE---EEETTEEEEGGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHH
T ss_pred CCCCCCCcEe---EcCCCCEEeHHHhCCCEEEEEec-cccccccccccchhHHhhhhcccccccccccccccccHHHHHH
Confidence 4689999998 56699999999999999999999 99999999999999999999964 47999999998643 2233
Q ss_pred HHHHhhccccccccCCCCCcceeEE-ecCCchHHHHhCCcccCCCccceeEEEEcCC-CcEEEE
Q psy15453 133 WINSLKKDNSLKKDNRLDKLKIPLL-SDLTHEISRDYGVYLEDKGHSLRGLFIIDRE-GIVRQI 194 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l-~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~-G~v~~~ 194 (247)
+... .. ...+++. .|....+.+.|++. .+|++||||++ |+|+..
T Consensus 78 ~~~~---------~~---~~~~~~~~~d~~~~l~~~y~v~------~~Pt~~liD~~~G~Vi~~ 123 (144)
T d1o8xa_ 78 YFAK---------MP---WLAVPFAQSEAVQKLSKHFNVE------SIPTLIGVDADSGDVVTT 123 (144)
T ss_dssp HHTT---------CS---SEECCGGGHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEES
T ss_pred HHhh---------cc---ccceeeecccchhhHHHHcCCC------cCCEEEEEeCCCCEEEEE
Confidence 2221 11 2344433 24457899999999 89999999998 798744
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.87 E-value=1.6e-22 Score=155.19 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=84.6
Q ss_pred ecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh-cCcEEEEEeCCChHhHHHHHHHhhcccccccc
Q psy15453 68 VDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK-IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKD 146 (247)
Q Consensus 68 ~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~-~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~ 146 (247)
.+++|+.++|++++||+++|+|| |+||++|+.++|.|+++++++++ .++++|+|+.|... .++.+...+
T Consensus 14 l~~~~~~v~ls~l~GK~vll~Fw-AtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~--~~~~~~~~~------- 83 (144)
T d1i5ga_ 14 LKGAAADIALPSLAGKTVFFYFS-ASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESA--EDFKDYYAK------- 83 (144)
T ss_dssp EETTEEEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSH--HHHHHHHTT-------
T ss_pred ccCCCCEeeHHHcCCCEEEEEEE-ecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccH--HHHHHHHHh-------
Confidence 57889999999999999999999 99999999999999999999985 47999999998633 333333221
Q ss_pred CCCCCcceeEEecCC--chHHHHhCCcccCCCccceeEEEEcCC-CcEEE
Q psy15453 147 NRLDKLKIPLLSDLT--HEISRDYGVYLEDKGHSLRGLFIIDRE-GIVRQ 193 (247)
Q Consensus 147 ~~~~~~~~~~l~D~~--~~~~~~~~~~~~~~g~~~p~~~lId~~-G~v~~ 193 (247)
. +..+..+.|.+ ..+.+.|++. .+|+++|||++ |+|+.
T Consensus 84 ~---~~~~~~~~d~~~~~~l~~~y~v~------~iPt~~lid~~~G~vi~ 124 (144)
T d1i5ga_ 84 M---PWLALPFEDRKGMEFLTTGFDVK------SIPTLVGVEADSGNIIT 124 (144)
T ss_dssp C---SSEECCTTCHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEE
T ss_pred C---CCCceeeEChHHHHHHHHHCCCC------CcCEEEEEeCCCCEEEe
Confidence 1 23333333333 3588999999 89999999996 89974
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Probab=99.84 E-value=1.1e-20 Score=147.53 Aligned_cols=149 Identities=23% Similarity=0.315 Sum_probs=118.0
Q ss_pred cccccCCCCCCceeeeee-cCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHHH-HHHHHHHHHHHHhcCc-EEEEEeCCC
Q psy15453 51 TNAVVMKPAPYWKGTAVV-DGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTE-VLALNEKIDEFHKIGA-EVVGVSVDS 126 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~-d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~-~~~l~~l~~~~~~~~~-~vl~Vs~d~ 126 (247)
..+++|+++|+|+|..+. +.++++++++++ +||++||+|+|+.|+|.|..+ .+...+..+.++++|. ++++||.|+
T Consensus 2 ~~l~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd~ 81 (162)
T d1tp9a1 2 APIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVND 81 (162)
T ss_dssp CCCCTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CCCCCCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeeccc
Confidence 468999999999996542 556789999985 999999999999999999764 5666777788877664 799999999
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCc-----cceeEEEEcCCCcEEEEEecCCCC
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGH-----SLRGLFIIDREGIVRQITLNDLPV 201 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~-----~~p~~~lId~~G~v~~~~~~~~~~ 201 (247)
+..+.+|....+. ..++++++|+.+.+++.||+.....+. ..+.+|||| +|+|++++....+.
T Consensus 82 ~~~~~~~~~~~~~-----------~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~~ve~~~~ 149 (162)
T d1tp9a1 82 PFVMKAWAKSYPE-----------NKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEGGGE 149 (162)
T ss_dssp HHHHHHHHHTCTT-----------CSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECSSSC
T ss_pred hhhhhhhhhhccc-----------ccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEEEEECCCC
Confidence 9999999985432 467999999999999999987654432 458899999 89999998644321
Q ss_pred --CCCHHHHHHH
Q psy15453 202 --GRSVEETLRL 211 (247)
Q Consensus 202 --~~~~~~il~~ 211 (247)
..+.+++++.
T Consensus 150 ~~~s~ae~vLk~ 161 (162)
T d1tp9a1 150 FTVSSAEDILKD 161 (162)
T ss_dssp CSSCSHHHHHTT
T ss_pred CccCCHHHHHhc
Confidence 2346666653
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=99.79 E-value=8.8e-19 Score=136.80 Aligned_cols=147 Identities=19% Similarity=0.336 Sum_probs=113.7
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHH-HhcCc-EEEEEeCCChHhH
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEF-HKIGA-EVVGVSVDSHFTH 130 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~-~~~~~-~vl~Vs~d~~~~~ 130 (247)
..|+.+|+|+++...+.+.+.++|+++ +||++||+|+|+.++|.|..++..+...+.++ ..+++ .++.++.+.+...
T Consensus 2 ~~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~~~s~d~~~~ 81 (163)
T d1nm3a2 2 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVM 81 (163)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHH
T ss_pred CCCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceeeeecCCHHHH
Confidence 369999999998775655678999996 99999999999999999999998877665433 33343 5666677777777
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCC-----ccceeEEEEcCCCcEEEEEecCCCCCC--
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG-----HSLRGLFIIDREGIVRQITLNDLPVGR-- 203 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g-----~~~p~~~lId~~G~v~~~~~~~~~~~~-- 203 (247)
.+|.+... ...+++++|+...+.+.||+.....+ ...+.+|||| +|+|+++++.+...+.
T Consensus 82 ~a~~~~~~------------~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~~v~~~~~g~~~ 148 (163)
T d1nm3a2 82 NAWKEDEK------------SENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKMFIEPNEPGDPF 148 (163)
T ss_dssp HHHHHHTT------------CTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECCSCSSCCC
T ss_pred HHHhhhhc------------cCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEEEEecCCCCCCc
Confidence 77766432 36799999999999999998765542 3568899999 9999999876554332
Q ss_pred ---CHHHHHHHHH
Q psy15453 204 ---SVEETLRLVR 213 (247)
Q Consensus 204 ---~~~~il~~l~ 213 (247)
+.+++|+.|.
T Consensus 149 ~~s~ae~vL~~L~ 161 (163)
T d1nm3a2 149 KVSDADTMLKYLA 161 (163)
T ss_dssp SSSSHHHHHHHHC
T ss_pred cccCHHHHHHHHc
Confidence 4677887775
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.3e-18 Score=134.00 Aligned_cols=139 Identities=18% Similarity=0.251 Sum_probs=97.7
Q ss_pred CceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHHhcC----cEEEEEeCCChHhHHHHHH
Q psy15453 61 YWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTF-VCPTEVLALNEKIDEFHKIG----AEVVGVSVDSHFTHRAWIN 135 (247)
Q Consensus 61 ~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp-~C~~~~~~l~~l~~~~~~~~----~~vl~Vs~d~~~~~~~~~~ 135 (247)
||+| +|++|++++|++|+||++||+|| ++||| .|..+++.+.++++++...+ +.++.++.++..+......
T Consensus 2 dF~L---~d~~G~~vsl~d~~GK~vll~F~-~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (160)
T d1wp0a1 2 PFSL---TTHTGERKTDKDYLGQWLLIYFG-FTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIA 77 (160)
T ss_dssp CCEE---EETTSCEEEGGGGTTSEEEEEEE-CTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHH
T ss_pred CeEE---EcCCCCEEcHHHhCCCEEEEEEE-CCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHH
Confidence 7998 78899999999999999999999 99997 79999999999999887543 4566667654332222222
Q ss_pred HhhccccccccCCCCCcceeEEecCC---chHHHHhCCcccCCC---------ccceeEEEEcCCCcEEEEEecCCCCCC
Q psy15453 136 SLKKDNSLKKDNRLDKLKIPLLSDLT---HEISRDYGVYLEDKG---------HSLRGLFIIDREGIVRQITLNDLPVGR 203 (247)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~D~~---~~~~~~~~~~~~~~g---------~~~p~~~lId~~G~v~~~~~~~~~~~~ 203 (247)
.... .. +.+|..+.+.. ..+.+.|++...... .+.+++||||++|+|++.+.+ ..
T Consensus 78 ~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~----~~ 144 (160)
T d1wp0a1 78 NYVK------EF---SPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQ----NK 144 (160)
T ss_dssp HHHH------TT---CTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEET----TC
T ss_pred HHHh------hc---CCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECC----CC
Confidence 2111 22 45777776554 457777776543321 145789999999999998732 22
Q ss_pred CHHHHHHHHHhhh
Q psy15453 204 SVEETLRLVRAFQ 216 (247)
Q Consensus 204 ~~~~il~~l~~l~ 216 (247)
+.+++.+.|+++.
T Consensus 145 ~~~~i~~~I~~~l 157 (160)
T d1wp0a1 145 RKGEIAASIATHM 157 (160)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 3577777776653
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=2.3e-18 Score=136.72 Aligned_cols=90 Identities=12% Similarity=0.078 Sum_probs=69.5
Q ss_pred CCCceeeeeecCC-ceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC--------hHh
Q psy15453 59 APYWKGTAVVDGN-IKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS--------HFT 129 (247)
Q Consensus 59 ~P~f~l~~~~d~~-G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~--------~~~ 129 (247)
+-||+++++ + |++++|++|+||++||+|| |+||++|+.+++.|++++++|+++|++||++..+. .++
T Consensus 3 iydf~~~~l---~~g~~vsL~~ykGKvvLivN~-AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF~~qE~~~~~e 78 (184)
T d2f8aa1 3 VYAFSARPL---AGGEPVSLGSLRGKVLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEE 78 (184)
T ss_dssp GGGCEECBT---TCSSCEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHH
T ss_pred eeeeEEEEC---CCCCEecHHHcCCCEEEEEEe-cccCCcchhhhHHHHHhhhhhcccceeEEEeeccccccccccchhh
Confidence 558888443 5 6889999999999999999 99999999999999999999999999999998654 345
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
+.++.+.... ..-.+.+|++...
T Consensus 79 i~~f~~~~~~-------~~~~~~~f~~~~k 101 (184)
T d2f8aa1 79 ILNSLKYVRP-------GGGFEPNFMLFEK 101 (184)
T ss_dssp HHHHHHHTSS-------CTTCCCSSEEBCC
T ss_pred hhhhhheecc-------cccccccccccee
Confidence 5555553211 1112567777653
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=7e-18 Score=130.16 Aligned_cols=144 Identities=16% Similarity=0.213 Sum_probs=95.9
Q ss_pred CCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHHh---cCcEEEEEeCCChHhHHHHHH
Q psy15453 60 PYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTF-VCPTEVLALNEKIDEFHK---IGAEVVGVSVDSHFTHRAWIN 135 (247)
Q Consensus 60 P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp-~C~~~~~~l~~l~~~~~~---~~~~vl~Vs~d~~~~~~~~~~ 135 (247)
+||+| +|++|+++++++|+||++||+|| .+||+ .|......+..++..+.. ..+.++.++.++.....+...
T Consensus 7 ~dF~l---~d~~G~~vsl~~~~GK~vli~f~-~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (169)
T d2b7ka1 7 GPFHL---EDMYGNEFTEKNLLGKFSIIYFG-FSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLK 82 (169)
T ss_dssp CCCEE---EETTSCEEEGGGGTTSCEEEEEE-CTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHH
T ss_pred CCeEE---EeCCCCEECHHHHCCCEEEEEEe-ccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhh
Confidence 58999 77799999999999999999999 77665 677777777777666653 346677776655433333333
Q ss_pred HhhccccccccCCCCCcceeEEecCC---chHHHHhCCcccCC-------C---ccceeEEEEcCCCcEEEEEecCCCCC
Q psy15453 136 SLKKDNSLKKDNRLDKLKIPLLSDLT---HEISRDYGVYLEDK-------G---HSLRGLFIIDREGIVRQITLNDLPVG 202 (247)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~D~~---~~~~~~~~~~~~~~-------g---~~~p~~~lId~~G~v~~~~~~~~~~~ 202 (247)
.... .. ...+....... ......|+...... + .+.|++||||++|+|+.++.+..+..
T Consensus 83 ~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~ 153 (169)
T d2b7ka1 83 EYLS------DF---HPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEK 153 (169)
T ss_dssp HHHT------TS---CTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTT
T ss_pred hhhc------cc---cccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHH
Confidence 2211 12 33444444333 34555565543221 0 15689999999999999986666666
Q ss_pred CCHHHHHHHHHhhh
Q psy15453 203 RSVEETLRLVRAFQ 216 (247)
Q Consensus 203 ~~~~~il~~l~~l~ 216 (247)
...++|++.|+++.
T Consensus 154 ~~~~~I~e~ik~ll 167 (169)
T d2b7ka1 154 TGVDKIVEHVKSYV 167 (169)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHh
Confidence 66778899998875
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.61 E-value=7e-15 Score=115.03 Aligned_cols=148 Identities=16% Similarity=0.242 Sum_probs=113.2
Q ss_pred ccCCCCCCceeeeee-------cCCc-----eeEEcCCC-CCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHH-HhcCc-
Q psy15453 54 VVMKPAPYWKGTAVV-------DGNI-----KEIKLTDY-RGKYLVFFFYPLDFTFVCPT-EVLALNEKIDEF-HKIGA- 117 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~-------d~~G-----~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~-~~~~l~~l~~~~-~~~~~- 117 (247)
++|+.+|+.++...+ +.+| +.++++++ +||.+||.+.|+.+.|.|.. ++|.+.+.+++| +++|+
T Consensus 1 k~~d~iP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd 80 (179)
T d1xiya1 1 KENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFD 80 (179)
T ss_dssp CTTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCS
T ss_pred CCCCcCCCeEEEEEecccccccccCCCCCCceEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCc
Confidence 467889988763111 2233 56788876 89999999999999999976 699999999999 56777
Q ss_pred EEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC--Cc---cceeEEEEcCCCcEE
Q psy15453 118 EVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK--GH---SLRGLFIIDREGIVR 192 (247)
Q Consensus 118 ~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~--g~---~~p~~~lId~~G~v~ 192 (247)
+|++||+|++..+++|.+.. ++ ..+.+++|+++++++.||+..... |+ .-+..+||| ||+|.
T Consensus 81 ~I~~iSvnD~fv~~aW~~~~----------~~--~~I~~lsD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~ 147 (179)
T d1xiya1 81 DIYCITNNDIYVLKSWFKSM----------DI--KKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILV 147 (179)
T ss_dssp EEEEEESSCHHHHHHHHHHT----------TC--CSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEE
T ss_pred eEEEEecCCHHHHHHHHhhc----------Cc--ceEEEeeCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEE
Confidence 69999999999999998854 22 256899999999999999976543 33 346789998 89999
Q ss_pred EEEecCCCC---------CCCHHHHHHHHHh
Q psy15453 193 QITLNDLPV---------GRSVEETLRLVRA 214 (247)
Q Consensus 193 ~~~~~~~~~---------~~~~~~il~~l~~ 214 (247)
+.+..+... ....+.+|+.|+.
T Consensus 148 ~~~vE~~~~~~~~~dp~~vSsae~iL~~L~~ 178 (179)
T d1xiya1 148 KMFQEKDKQHNIQTDPYDISTVNNVKEFLKN 178 (179)
T ss_dssp EEEECSSCCTTCSSCCCSTTSHHHHHHHHHC
T ss_pred EEEEeCCCCCCCCCCCcccCCHHHHHHHHhc
Confidence 998654321 2456777777763
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.33 E-value=1.7e-12 Score=93.92 Aligned_cols=89 Identities=20% Similarity=0.342 Sum_probs=69.4
Q ss_pred cCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeE
Q psy15453 77 LTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPL 156 (247)
Q Consensus 77 l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (247)
+.+..||++||.|| ++||++|+...|.++++.+++++ .+.++.|..|.
T Consensus 20 l~~~~~k~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~-~~~~~~i~~d~------------------------------ 67 (111)
T d1xwaa_ 20 LTKASGKLVVLDFF-ATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVDE------------------------------ 67 (111)
T ss_dssp HHHHTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT------------------------------
T ss_pred HHhcCCCEEEEEEE-CCcccCccccchhHHHHhhhccc-ceEEEEEEeec------------------------------
Confidence 44457999999999 99999999999999999999874 46777776653
Q ss_pred EecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy15453 157 LSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVR 213 (247)
Q Consensus 157 l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~ 213 (247)
...+.++|++. .+|+++++ ++|+++..+.|. +.+++.+.|+
T Consensus 68 ----~~~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~I~ 108 (111)
T d1xwaa_ 68 ----CEDIAMEYNIS------SMPTFVFL-KNGVKVEEFAGA-----NAKRLEDVIK 108 (111)
T ss_dssp ----CHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHH
T ss_pred ----CcchhhcCCCc------cccEEEEE-ECCEEEEEEeCC-----CHHHHHHHHH
Confidence 24677889998 89988888 689999888663 2355555554
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.29 E-value=9.9e-12 Score=88.80 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=71.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+...|.+.++..+|++ .+.++.|+.|.
T Consensus 16 ~~k~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~vd~~~---------------------------------- 59 (105)
T d1nw2a_ 16 GDKPVLVDFW-AAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDE---------------------------------- 59 (105)
T ss_dssp SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------------
T ss_pred CCCcEEEEEE-CCCCCCcccccchhhhhhhhcCC-ceEEEEEECCC----------------------------------
Confidence 3689999999 99999999999999999999975 58888887753
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
...++++|++. .+|+++++ ++|+.+..+.|..+ .+++.+.|+.+
T Consensus 60 ~~~~~~~~~V~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~i~~~ 103 (105)
T d1nw2a_ 60 NPETTSQFGIM------SIPTLILF-KGGEPVKQLIGYQP----KEQLEAQLADV 103 (105)
T ss_dssp CHHHHHHTTCC------BSSEEEEE-ETTEEEEEEESCCC----HHHHHHHTTTT
T ss_pred CcccHHHCCcc------eeeEEEEE-ECCEEEEEEECCCC----HHHHHHHHHHH
Confidence 24677889999 89999988 58999888866543 56666666554
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.28 E-value=1.7e-11 Score=87.83 Aligned_cols=88 Identities=14% Similarity=0.323 Sum_probs=71.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+...|.+.++..++.. .+.++.|+.|.
T Consensus 18 s~kpvlv~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~d~---------------------------------- 61 (107)
T d1dbya_ 18 SSVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDE---------------------------------- 61 (107)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------------
T ss_pred CCCcEEEEEE-CCCCCCccccChHHHHHHHhhcc-cceEEEEeccc----------------------------------
Confidence 3689999999 99999999999999999888865 57888877753
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
...+.++|++. .+|+++++. +|+.+..+.|..+ .+++.+.|+..
T Consensus 62 ~~~l~~~~~V~------~~Pt~~~~~-~G~~v~~~~G~~~----~~~l~~~i~~~ 105 (107)
T d1dbya_ 62 SPNVASEYGIR------SIPTIMVFK-GGKKCETIIGAVP----KATIVQTVEKY 105 (107)
T ss_dssp CHHHHHHHTCC------SSCEEEEES-SSSEEEEEESCCC----HHHHHHHHHHH
T ss_pred chhHHHHhccc------ceEEEEEEE-CCeEEEEEeCCCC----HHHHHHHHHHh
Confidence 24688899999 899999995 8999988866543 57777777654
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.28 E-value=8.6e-12 Score=90.43 Aligned_cols=87 Identities=11% Similarity=0.216 Sum_probs=71.9
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+|+++|.|| ++||++|+...|.+.++.++|. ++.++.|+.|. ..
T Consensus 25 ~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~--~v~~~~vd~~~---------------------------------~~ 68 (112)
T d1f9ma_ 25 DKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ---------------------------------EN 68 (112)
T ss_dssp TSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS---------------------------------TT
T ss_pred CCEEEEEEE-cCCCcchHHHHHHHhhhccccc--cceeecccccc---------------------------------cc
Confidence 579999999 9999999999999999999986 68888887653 12
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
..+.+.|++. .+|+++++ ++|+++..+.|. +.+++++.|++..
T Consensus 69 ~~l~~~~~V~------~~Pt~~~~-k~G~~v~~~~G~-----~~~~l~e~i~~~~ 111 (112)
T d1f9ma_ 69 KTLAKELGIR------VVPTFKIL-KENSVVGEVTGA-----KYDKLLEAIQAAR 111 (112)
T ss_dssp HHHHHHHCCS------SSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHHH
T ss_pred hhhHhheeec------cCCEEEEE-ECCEEEEEEeCC-----CHHHHHHHHHHcc
Confidence 4778899999 89999999 799999888663 3477888887654
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.27 E-value=2.9e-11 Score=86.72 Aligned_cols=87 Identities=14% Similarity=0.255 Sum_probs=71.2
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+|+++|.|| ++||++|+...|.+.++.+++.+ .+.++.|+.|. +
T Consensus 20 ~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~d~----------------------------------~ 63 (108)
T d1thxa_ 20 EQPVLVYFW-ASWCGPCQLMSPLINLAANTYSD-RLKVVKLEIDP----------------------------------N 63 (108)
T ss_dssp SSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEESTT----------------------------------C
T ss_pred CCcEEEEEE-CCCCCCccccchHHHHHHHhcCC-cceeceecccc----------------------------------c
Confidence 579999999 99999999999999999998875 47888887653 3
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
..++++|++. .+|+++++. +|+.+..+.|.. +.+++.+.|+..
T Consensus 64 ~~l~~~~~I~------~~Pt~~~~~-~g~~v~~~~G~~----~~~~l~~~i~~~ 106 (108)
T d1thxa_ 64 PTTVKKYKVE------GVPALRLVK-GEQILDSTEGVI----SKDKLLSFLDTH 106 (108)
T ss_dssp HHHHHHTTCC------SSSEEEEEE-TTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred HHHHHHhccc------CCCEEEEEE-CCEEEEEEeCCC----CHHHHHHHHHHh
Confidence 4688999999 899999995 799888876653 367777777653
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=2e-11 Score=87.52 Aligned_cols=87 Identities=18% Similarity=0.321 Sum_probs=69.6
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+|+++|.|| ++||++|+...|.+.++..++.. .+.++.|+.|. +
T Consensus 20 ~~~v~v~F~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~vd~d~----------------------------------~ 63 (108)
T d2trxa_ 20 DGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ----------------------------------N 63 (108)
T ss_dssp SSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT----------------------------------C
T ss_pred CCcEEEEEE-CCCCCCccccCcHHHHHHHHhhc-ceeeeeccccc----------------------------------h
Confidence 689999999 99999999999999999887754 56776666542 3
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
..+.+.|++. .+|+++++ ++|+.+..+.|.. +.+++.+.|++.
T Consensus 64 ~~l~~~~~v~------~~PT~~~~-~~G~~v~~~~G~~----~~~~l~~~i~~~ 106 (108)
T d2trxa_ 64 PGTAPKYGIR------GIPTLLLF-KNGEVAATKVGAL----SKGQLKEFLDAN 106 (108)
T ss_dssp TTHHHHTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred hhHHHHhCCC------cEEEEEEE-ECCEEEEEEeCCC----CHHHHHHHHHHh
Confidence 5688999999 89987777 6899998886654 367777777664
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.1e-12 Score=96.42 Aligned_cols=81 Identities=12% Similarity=0.180 Sum_probs=66.1
Q ss_pred cCCCCCCeEEEEEEeCC-------CCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCC
Q psy15453 77 LTDYRGKYLVFFFYPLD-------FTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRL 149 (247)
Q Consensus 77 l~~~~gk~vvl~F~~a~-------~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 149 (247)
+.+.+||+++|+|| |+ ||++|++.+|.+.++++++++ ++.++.|+.+... .
T Consensus 16 l~~~~gk~v~v~F~-a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~-~~~~~~vdv~~~~---~----------------- 73 (119)
T d1woua_ 16 VEQHNGKTIFAYFT-GSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKP---Y----------------- 73 (119)
T ss_dssp HHTTTTSEEEEEEE-CCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHH---H-----------------
T ss_pred HHHcCCCEEEEEEE-ecCCCCCCCCChhHHHHHHHHHHHHHhcCC-ceEEEEEECCCCc---c-----------------
Confidence 34567999999999 85 999999999999999988864 5999999987621 1
Q ss_pred CCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEE
Q psy15453 150 DKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVR 192 (247)
Q Consensus 150 ~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~ 192 (247)
+.|.+..+.+.|++. .+|++++++..+++.
T Consensus 74 -------~~d~~~~l~~~~~V~------~iPT~i~~~~g~~l~ 103 (119)
T d1woua_ 74 -------WKDPNNDFRKNLKVT------AVPTLLKYGTPQKLV 103 (119)
T ss_dssp -------HHCTTCHHHHHHCCC------SSSEEEETTSSCEEE
T ss_pred -------cchhhhhHHHhCCeE------EEEEEEEEECCeEEe
Confidence 124567899999999 999999998766665
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.23 E-value=2.9e-11 Score=86.07 Aligned_cols=86 Identities=13% Similarity=0.246 Sum_probs=69.3
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+|+++|.|| ++||++|+...|.+.++.+++.. .+.++.|+.|. +
T Consensus 17 ~~~vlv~F~-a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~v~~d~----------------------------------~ 60 (104)
T d1fb6a_ 17 EVPVMVDFW-APWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDE----------------------------------A 60 (104)
T ss_dssp SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------------C
T ss_pred CCcEEEEEE-cCccCCccccCchhHHHHHhhcC-ccceeEEeccc----------------------------------c
Confidence 678999999 99999999999999999998865 45676666653 3
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
..++++|++. .+|+++++ ++|+.+..+.|..+ .+++.+.|+.
T Consensus 61 ~~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~~~----~~~l~~~i~~ 102 (104)
T d1fb6a_ 61 PGIATQYNIR------SIPTVLFF-KNGERKESIIGAVP----KSTLTDSIEK 102 (104)
T ss_dssp HHHHHHTTCC------SSSEEEEE-ETTEEEEEEEECCC----HHHHHHHHHH
T ss_pred hhhhhhccee------eeeEEEEE-EcCeEEEEEeCCCC----HHHHHHHHHH
Confidence 4788999999 89998887 68999988876543 5777777765
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.23 E-value=4e-11 Score=85.75 Aligned_cols=91 Identities=16% Similarity=0.069 Sum_probs=64.8
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc---CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCccee
Q psy15453 79 DYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI---GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIP 155 (247)
Q Consensus 79 ~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~---~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (247)
+..+++.|++|| ++|||+|+...|.+.++..+.... .+.++.|+.+
T Consensus 12 ~~~~~v~i~~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~------------------------------ 60 (107)
T d1a8la2 12 NIDQDVRILVFV-TPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAI------------------------------ 60 (107)
T ss_dssp TCCSCEEEEEEE-CSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGG------------------------------
T ss_pred hcCCCeEEEEEE-cCccccchhhChhHHhhhhhhhhccCCcEEEEEeccc------------------------------
Confidence 334456677799 999999999999999998765432 2444444432
Q ss_pred EEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 156 LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 156 ~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
....++++|++. .+|++ ++.++|+++..+.|..+ .+++++.|+..
T Consensus 61 ----~~~~l~~~~~V~------~vPTi-~i~~~G~~~~~~~G~~~----~~~~~~~i~~a 105 (107)
T d1a8la2 61 ----EYPEWADQYNVM------AVPKI-VIQVNGEDRVEFEGAYP----EKMFLEKLLSA 105 (107)
T ss_dssp ----GCHHHHHHTTCC------SSCEE-EEEETTEEEEEEESCCC----HHHHHHHHHHH
T ss_pred ----cccccccccccc------cceEE-EEEeCCeEEEEEECCCC----HHHHHHHHHHh
Confidence 124688999999 89965 56689999988877554 56777766553
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=7.2e-12 Score=91.17 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=67.1
Q ss_pred EEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh-cCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcc
Q psy15453 75 IKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK-IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLK 153 (247)
Q Consensus 75 v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~-~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (247)
..+.+.+||+++|.|| ++||++|+...|.+.+..+..+. .++.++.+..+...
T Consensus 15 ~~l~~~~gK~vlv~F~-a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------------------- 68 (117)
T d2fwha1 15 QALVEAKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAND------------------------- 68 (117)
T ss_dssp HHHHHHTTSCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCC-------------------------
T ss_pred HHHHHcCCCeEEEEEe-cccCCcccccchhHHhHHHHHHhccceEEEecccccch-------------------------
Confidence 3455568999999999 99999999999987433332221 25666666543211
Q ss_pred eeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEE--EecCCCCCCCHHHHHHHHH
Q psy15453 154 IPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQI--TLNDLPVGRSVEETLRLVR 213 (247)
Q Consensus 154 ~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~--~~~~~~~~~~~~~il~~l~ 213 (247)
+.+..+.+.|++. .+|+++++|++|+++.. ..|. .+.+++++.|+
T Consensus 69 -----~~~~~l~~~~~v~------~~Pt~~~~~~~G~~~~~~~~~G~----~~~~~~~~~l~ 115 (117)
T d2fwha1 69 -----AQDVALLKHLNVL------GLPTILFFDGQGQEHPQARVTGF----MDAETFSAHLR 115 (117)
T ss_dssp -----HHHHHHHHHTTCC------SSSEEEEECTTSCBCGGGCBCSC----CCHHHHHHHHH
T ss_pred -----hHHHHHHhhhehh------hceEEEEEeCCCcEEeccccccc----CCHHHHHHHHh
Confidence 1124678889998 89999999999997642 2232 34677777775
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=3.5e-11 Score=85.96 Aligned_cols=86 Identities=12% Similarity=0.145 Sum_probs=68.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|++||.|| |+||++|+...|.+.++.+++. ++.++-|+.|.
T Consensus 19 ~~k~vvv~F~-a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~d~---------------------------------- 61 (105)
T d2ifqa1 19 GDKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDD---------------------------------- 61 (105)
T ss_dssp TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------------
T ss_pred CCCEEEEEEE-cCCccchhhhhhhhhhhccccc--cceeeeccccc----------------------------------
Confidence 4689999999 9999999999999999998876 56777676653
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
...+.+.|++. .+|+++++ ++|+.+..+.|. +.+++.+.|+.+
T Consensus 62 ~~~~~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~i~~~ 104 (105)
T d2ifqa1 62 CQDVASECEVK------CMPTFQFF-KKGQKVGEFSGA-----NKEKLEATINEL 104 (105)
T ss_dssp CHHHHHHTTCC------BSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHH
T ss_pred CHhHHHHcCce------EEEEEEEE-ECCEEEEEEeCC-----CHHHHHHHHHhh
Confidence 24677889998 89999888 799999888663 246677777654
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.21 E-value=4.1e-11 Score=86.94 Aligned_cols=85 Identities=11% Similarity=0.202 Sum_probs=68.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|++||.|| ++||++|+...|.+.++.++|+ ++.++.|..|.
T Consensus 27 ~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~~~---------------------------------- 69 (114)
T d1xfla_ 27 SKTLVVVDFT-ASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDE---------------------------------- 69 (114)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT----------------------------------
T ss_pred cCCeEEEEEE-cCCCCCccccccchhhhccccc--ccceeEEEeee----------------------------------
Confidence 3789999999 9999999999999999998886 67777776653
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
...+.++|++. .+|+++++ ++|+++..+.|. +.+++.+.|+.
T Consensus 70 ~~~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~i~k 111 (114)
T d1xfla_ 70 LKSVASDWAIQ------AMPTFMFL-KEGKILDKVVGA-----KKDELQSTIAK 111 (114)
T ss_dssp SHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHH
T ss_pred ceeecccccee------eeEEEEEE-ECCEEEEEEeCc-----CHHHHHHHHHH
Confidence 24677889999 89988888 799999887663 34677666654
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.20 E-value=5e-11 Score=86.21 Aligned_cols=87 Identities=14% Similarity=0.213 Sum_probs=70.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+...|.+.++.++++. .+.++.|+.|.
T Consensus 23 ~~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~---------------------------------- 66 (112)
T d1ep7a_ 23 EHKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDA---------------------------------- 66 (112)
T ss_dssp HTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------------
T ss_pred cCCeEEEEEE-cCCcCCCcccchhhhhhhhcccc-eEEEEEeeccc----------------------------------
Confidence 4789999999 99999999999999999999874 58888888763
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
...+.++|++. .+|+++++ ++|+.+..+.|. +.+++.+.|+..
T Consensus 67 ~~~l~~~~~v~------~~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~i~k~ 109 (112)
T d1ep7a_ 67 VAAVAEAAGIT------AMPTFHVY-KDGVKADDLVGA-----SQDKLKALVAKH 109 (112)
T ss_dssp THHHHHHHTCC------BSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHH
T ss_pred ccccccccccc------CCCEEEEE-ECCEEEEEEeCc-----CHHHHHHHHHHH
Confidence 24677899999 89988877 689999888663 356766666553
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.19 E-value=1.4e-14 Score=112.74 Aligned_cols=48 Identities=15% Similarity=0.096 Sum_probs=41.3
Q ss_pred EcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 76 KLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 76 ~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
.+.++++++++++|| ++|||+|+.++|.|.+++++++ ++.+..|+.|.
T Consensus 48 ~l~~~~~~~~~l~~~-~tWC~~C~~~~P~l~~l~~~~~--~~~~~~i~~d~ 95 (166)
T d1z6na1 48 RLQRIERRYRLLVAG-EMWCPDCQINLAALDFAQRLQP--NIELAIISKGR 95 (166)
T ss_dssp HHHTCCSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHH
T ss_pred HHHHhcCCeEEEEEE-eCcCccHHHHHHHHHHHHHHCC--CCcEEEEECcc
Confidence 456788999999999 9999999999999999999886 56777776653
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.19 E-value=5e-11 Score=86.42 Aligned_cols=86 Identities=19% Similarity=0.191 Sum_probs=69.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+++++|.|| |+||++|+...|.|.++.+++. ++.++.|+.|.
T Consensus 25 ~~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~---------------------------------- 67 (113)
T d1r26a_ 25 EDILTVAWFT-AVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADN---------------------------------- 67 (113)
T ss_dssp SSSCEEEEEE-CTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT----------------------------------
T ss_pred CCCeEEEEEE-CCCCccchhhceeccccccccc--ccccccccccc----------------------------------
Confidence 4679999999 9999999999999999999886 78998888764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
...+.+.||+. .+|+++++ ++|+.+..+.|. +.+.+.+.|+++
T Consensus 68 ~~~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~l~~~ 110 (113)
T d1r26a_ 68 NSEIVSKCRVL------QLPTFIIA-RSGKMLGHVIGA-----NPGMLRQKLRDI 110 (113)
T ss_dssp CHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred chhhHHHcccc------CCCEEEEE-ECCEEEEEEeCC-----CHHHHHHHHHHH
Confidence 24688899999 89988887 789999888663 235566666554
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=5.7e-11 Score=85.25 Aligned_cols=85 Identities=9% Similarity=0.057 Sum_probs=69.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|.+||.|| ++||++|+...|.+.++.++++ ++.++-|+.|.
T Consensus 20 ~~klvvv~F~-a~wC~~Ck~~~p~~~~la~~~~--~~~f~~vd~d~---------------------------------- 62 (107)
T d1gh2a_ 20 GSRLAVVKFT-MRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQ---------------------------------- 62 (107)
T ss_dssp TTSCEEEEEE-CSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------------
T ss_pred CCCEEEEEEE-CCCCCCccccchhhhccccccc--ccccccccccc----------------------------------
Confidence 4789999999 9999999999999999999886 68888877653
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
...+.+.|++. .+|+++++ ++|+.+..+.|. +.+++.+.|+.
T Consensus 63 ~~~l~~~~~v~------~~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~i~k 104 (107)
T d1gh2a_ 63 CQGTAATNNIS------ATPTFQFF-RNKVRIDQYQGA-----DAVGLEEKIKQ 104 (107)
T ss_dssp SHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHH
T ss_pred chhhhhhcCce------eceEEEEE-ECCEEEEEEeCC-----CHHHHHHHHHH
Confidence 24677899998 89988888 799999888663 34666666654
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.16 E-value=5.9e-11 Score=85.90 Aligned_cols=85 Identities=16% Similarity=0.273 Sum_probs=67.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|++||.|| ++||++|+...|.+.++.+++. ++.++-|+.|.
T Consensus 25 ~~k~vvv~F~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d~---------------------------------- 67 (113)
T d1ti3a_ 25 SQKLIVVDFT-ASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDE---------------------------------- 67 (113)
T ss_dssp SSSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT----------------------------------
T ss_pred CCCEEEEEEE-cCccccchhhhhhhhhhhccCC--CceEEeeeeec----------------------------------
Confidence 4689999999 9999999999999999998875 67777776653
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
...+.++|++. .+|+++++ ++|+.+..+.|. + .+++.+.|+.
T Consensus 68 ~~~l~~~~~I~------~~Pt~~~~-k~G~~v~~~~G~-~----~~~l~~~i~k 109 (113)
T d1ti3a_ 68 LKAVAEEWNVE------AMPTFIFL-KDGKLVDKTVGA-D----KDGLPTLVAK 109 (113)
T ss_dssp CHHHHHHHHCS------STTEEEEE-ETTEEEEEEECC-C----TTHHHHHHHH
T ss_pred cccccccCeec------ccceEEEE-ECCEEEEEEcCC-C----HHHHHHHHHH
Confidence 24678899999 89988888 599999888663 2 2456666654
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=1.2e-10 Score=87.22 Aligned_cols=97 Identities=12% Similarity=0.116 Sum_probs=74.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|++||.|| +.||++|+...|.+.++.++|++ .+.++.|+.|.
T Consensus 21 ~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~VDvd~---------------------------------- 64 (137)
T d1qgva_ 21 EDRVVVIRFG-HDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITE---------------------------------- 64 (137)
T ss_dssp SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTT----------------------------------
T ss_pred CCCEEEEEEE-CCCCccchhcChHHHHHHHHhhc-cceEEEeeccc----------------------------------
Confidence 3689999999 99999999999999999999974 47888887764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCC------CCCHHHHHHHHHhhhcccc
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPV------GRSVEETLRLVRAFQYTDE 220 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~------~~~~~~il~~l~~l~~~~~ 220 (247)
..++++.|++. .+|+++++ ++|+.+....|..+. -.+.++.++.++.+.....
T Consensus 65 ~~~la~~~~I~------~~PT~~~f-~~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~~~~~ 123 (137)
T d1qgva_ 65 VPDFNKMYELY------DPCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGAR 123 (137)
T ss_dssp CCTTTTSSCSC------SSCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHHT
T ss_pred cchhhhhcCee------eEEEEEEE-eCCcEEEEEecCCCcceeeeehhhhHHHHHHHHHHHHHHh
Confidence 24788999999 89999999 577777665443321 2356788888887765444
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.11 E-value=1.8e-11 Score=89.62 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=63.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.++++++.|| ++|||+|+...|.|.++.++|.+..+.+..|+.|.
T Consensus 29 ~~~~vll~f~-a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~---------------------------------- 73 (119)
T d2es7a1 29 GDGVILLSSD-PRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQ---------------------------------- 73 (119)
T ss_dssp CSEEEEECCC-SCC----CCHHHHHHHHHHTCTTSCCEEEEECHHH----------------------------------
T ss_pred CCcEEEEeec-CCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCC----------------------------------
Confidence 3568888999 99999999999999999999975556666664431
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+++.||+. .+|+++++ ++|+.+..+.|..+ .+++++.|+++
T Consensus 74 ~~~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~~~----~~~l~~~i~~l 117 (119)
T d2es7a1 74 SEAIGDRFNVR------RFPATLVF-TDGKLRGALSGIHP----WAELLTLMRSI 117 (119)
T ss_dssp HHHHHHTTTCC------SSSEEEEE-SCC----CEESCCC----HHHHHHHHHHH
T ss_pred CHHHHHhcCcC------cceEEEEE-EcCeEEEEeeCCCC----HHHHHHHHHHH
Confidence 25788899999 89999999 79999988866554 57788877765
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=2.3e-11 Score=90.68 Aligned_cols=91 Identities=15% Similarity=0.205 Sum_probs=72.7
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++++|.|| +.|||+|+...|.|.++.++|.++.+.+..|..|. +
T Consensus 36 ~~vVll~f~-a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~----------------------------------~ 80 (132)
T d2hfda1 36 DGVVLLSSD-PKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ----------------------------------S 80 (132)
T ss_dssp EEEEEECSC-CSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHH----------------------------------H
T ss_pred CcEEEEEee-CCCChhHHHHHHHHHHHHHHccCCcceeEEEEecC----------------------------------C
Confidence 468888999 99999999999999999999986555555554431 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhcc
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYT 218 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 218 (247)
.++.+.|++. .+|+++++ ++|+.+..+.|..+ .+++++.|+.+...
T Consensus 81 ~~la~~~~V~------~~PT~~~~-~~G~~v~~~~G~~~----~~~l~~~i~~ll~~ 126 (132)
T d2hfda1 81 EAIGDRFGVF------RFPATLVF-TGGNYRGVLNGIHP----WAELINLMRGLVEP 126 (132)
T ss_dssp HHHHHHHTCC------SCCEEEEE-ETTEEEEEECCCSC----HHHHHHHHHHHHSC
T ss_pred HHHHHhhccC------cceeEEEE-EcCcEeeeecCCCC----HHHHHHHHHHHhCc
Confidence 5788999999 89998888 79999988866543 68888888877643
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.06 E-value=4.2e-10 Score=79.82 Aligned_cols=85 Identities=13% Similarity=0.223 Sum_probs=67.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+++++|.|| ++||++|+...|.+.++.++|. +..++-|+.|.
T Consensus 17 ~~~~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~--~~~~~~vd~d~---------------------------------- 59 (103)
T d1syra_ 17 QNELVIVDFF-AEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDE---------------------------------- 59 (103)
T ss_dssp HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------------
T ss_pred CCCcEEEEEe-CCcccCcccccccchhhhhccc--ceEEEeecccc----------------------------------
Confidence 3689999999 9999999999999999999886 57777777653
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
..++.++|++. .+|+++++ ++|+.+..+.|. +.+++.+.|+.
T Consensus 60 ~~~~~~~~~V~------~~Pt~i~~-k~G~~v~~~~G~-----~~~~l~~~i~k 101 (103)
T d1syra_ 60 VSEVTEKENIT------SMPTFKVY-KNGSSVDTLLGA-----NDSALKQLIEK 101 (103)
T ss_dssp THHHHHHTTCC------SSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHT
T ss_pred Ccceeeeeeee------cceEEEEE-ECCEEEEEEeCc-----CHHHHHHHHHh
Confidence 24677899999 89987777 689999887663 23566666553
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.06 E-value=8.5e-11 Score=80.50 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=59.6
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+|+.|+.|| |+||++|+...|.+.++.+++.. .+.++.+..| .+
T Consensus 2 ~kv~v~~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~d----------------------------------~~ 45 (85)
T d1fo5a_ 2 SKVKIELFT-SPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVM----------------------------------EN 45 (85)
T ss_dssp CCEEEEEEE-CCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEESS----------------------------------SS
T ss_pred CceEEEEEE-CCCCcChHhhhhhcccccccccc-cccccccccc----------------------------------cc
Confidence 688999999 99999999999999998887653 3455554443 23
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
.+++++|++. .+|++ +++++|+++ |.. +.+++.+.|+.
T Consensus 46 ~~la~~~~V~------~~Pt~-~i~~~g~~~----G~~----~~~~l~~~i~~ 83 (85)
T d1fo5a_ 46 PQKAMEYGIM------AVPTI-VINGDVEFI----GAP----TKEALVEAIKK 83 (85)
T ss_dssp CCTTTSTTTC------CSSEE-EETTEEECC----SSS----SSHHHHHHHHH
T ss_pred ccccccCCce------EeeEE-EEECCcEEE----CCC----CHHHHHHHHHh
Confidence 4667889999 88975 677787643 332 34677777764
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.00 E-value=1.2e-09 Score=76.52 Aligned_cols=84 Identities=17% Similarity=0.163 Sum_probs=64.8
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 79 DYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 79 ~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
++.|.+.++.|+ ++|||+|+...|.++++..++. ++.+..|+.+.
T Consensus 12 ~l~~~~~i~~F~-s~~C~~C~~~~p~~~~~a~~~~--~i~~~~vd~~~-------------------------------- 56 (96)
T d1hyua4 12 DIDGDFEFETYY-SLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGT-------------------------------- 56 (96)
T ss_dssp HCCSCEEEEEEE-CTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTT--------------------------------
T ss_pred hcCCCeEEEEEE-CCCCcchHHHHHHHHHHHHhCC--ceEEEEEeccc--------------------------------
Confidence 445778888999 9999999999999999987654 67777776653
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
..++...||+. .+|++++ +|+.++. |. .+.+++++.|++
T Consensus 57 --~~~l~~~~~I~------~vPt~~~---ng~~~~~--G~----~~~~~l~~~les 95 (96)
T d1hyua4 57 --FQNEITERNVM------GVPAVFV---NGKEFGQ--GR----MTLTEIVAKVDT 95 (96)
T ss_dssp --CHHHHHHTTCC------SSSEEEE---TTEEEEE--SC----CCHHHHHHHHCC
T ss_pred --chHHHhhcccc------cccEEEE---CCEEEEe--cC----CCHHHHHHHHhC
Confidence 35788899999 8998755 6777643 43 357888888764
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.97 E-value=2.5e-09 Score=77.29 Aligned_cols=89 Identities=13% Similarity=0.191 Sum_probs=64.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+++++|.|| ++|||+|+...|.+.++.++++ ..+..|..+...+...
T Consensus 25 ~~~~~~v~f~-~~~C~~C~~~~p~l~~~~~~~~---~~v~~v~~~~~~~~~~---------------------------- 72 (115)
T d1zmaa1 25 KKETATFFIG-RKTCPYCRKFAGTLSGVVAETK---AHIYFINSEEPSQLND---------------------------- 72 (115)
T ss_dssp TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTCGGGHHH----------------------------
T ss_pred cCCCEEEEEc-CCCCccHHHHHHHHHHHHHHhh---hhhhhheeeccccccc----------------------------
Confidence 3678999999 9999999999999999988874 3455566664332211
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
...+.+.|++. .+|+++++. +|++...+.|..+ .+++.+.|
T Consensus 73 ~~~~~~~~~V~------~~PTli~~~-~gk~~~~~~G~~~----~~el~~fl 113 (115)
T d1zmaa1 73 LQAFRSRYGIP------TVPGFVHIT-DGQINVRCDSSMS----AQEIKDFA 113 (115)
T ss_dssp HHHHHHHHTCC------SSCEEEEEE-TTEEEEECCTTCC----HHHHHHHH
T ss_pred ccccccccccc------cccEEEEEE-CCEEEEEEcCCCC----HHHHHHHH
Confidence 13567889999 899999885 8998887755443 45555444
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.95 E-value=1.4e-09 Score=79.15 Aligned_cols=92 Identities=8% Similarity=0.122 Sum_probs=70.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.++.++|.|| ++||++|+...|.+.++..++.+.++.|..|+.+.
T Consensus 26 ~~~~~lV~fy-a~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~---------------------------------- 70 (119)
T d2b5ea4 26 SHDLVLAEFF-APWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE---------------------------------- 70 (119)
T ss_dssp TCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT----------------------------------
T ss_pred cCCeEEEEEE-CCccCcccccchhhhhhhhhhcccceeeeeeeccc----------------------------------
Confidence 3678999999 99999999999999999999876678888887753
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
...+..+|++. .+|+++++ ++|+......+. ...+.+++++.|+...
T Consensus 71 ~~~l~~~~~v~------~~Pti~~f-~~g~~~~~~~y~--g~~~~~~l~~fi~k~~ 117 (119)
T d2b5ea4 71 NQDLCMEHNIP------GFPSLKIF-KNSDVNNSIDYE--GPRTAEAIVQFMIKQS 117 (119)
T ss_dssp CHHHHHHTTCC------SSSEEEEE-ETTCTTCEEECC--SCCSHHHHHHHHHHHT
T ss_pred hHHHHHHhccc------cCCeEEEE-ECCEEeeeEEec--CCCCHHHHHHHHHHhh
Confidence 24778889998 89999998 666544332111 2246799999988653
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.93 E-value=1.5e-09 Score=74.18 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=58.0
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchH
Q psy15453 85 LVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI 164 (247)
Q Consensus 85 vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~ 164 (247)
.|..|| ++||++|++..|.++++.++|.+ ++.++-|+.|. +.++
T Consensus 4 ~v~~F~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~----------------------------------~~~l 47 (85)
T d1nhoa_ 4 NIEVFT-SPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMV----------------------------------DREK 47 (85)
T ss_dssp CEEEES-CSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTT----------------------------------CGGG
T ss_pred EEEEEE-CCCCcchHHHHHHHhhhcccccc-ccccccccccc----------------------------------chhh
Confidence 466688 99999999999999999999964 57787776653 3567
Q ss_pred HHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 165 SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 165 ~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
.++||+. .+|++ +++.+| ++ .|.. +.+++.+.|+.
T Consensus 48 ~~~~~V~------~~Pt~-~~~~~~--~~--~G~~----~~~~l~~~i~~ 82 (85)
T d1nhoa_ 48 AIEYGLM------AVPAI-AINGVV--RF--VGAP----SREELFEAIND 82 (85)
T ss_dssp GGGTCSS------CSSEE-EETTTE--EE--ECSS----CCHHHHHHHHH
T ss_pred HHhcCce------EeCEE-EECCcE--EE--EcCC----CHHHHHHHHHH
Confidence 8899999 89975 455443 33 2432 34777777654
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=1.1e-09 Score=81.34 Aligned_cols=97 Identities=12% Similarity=0.112 Sum_probs=60.7
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 80 YRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 80 ~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
-.||+++|+|| ++||++|+++.+.+.+..+..+ .+..+|.|..|.... .
T Consensus 23 ~~~Kpvlv~F~-a~wC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~---------~-------------------- 71 (135)
T d1sena_ 23 ASGLPLMVIIH-KSWCGACKALKPKFAESTEISE-LSHNFVMVNLEDEEE---------P-------------------- 71 (135)
T ss_dssp HHTCCEEEEEE-CTTCHHHHHHHHHHHTCHHHHH-HHTTSEEEEEEGGGS---------C--------------------
T ss_pred HcCCcEEEEEE-ecCCCCceecchhhhhhHHHHH-hcCCcEEEeCCCCcC---------H--------------------
Confidence 35999999999 9999999999999987654433 223455555543110 0
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC------CCCCHHHHHHHHHhh
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP------VGRSVEETLRLVRAF 215 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~------~~~~~~~il~~l~~l 215 (247)
..... .+... .+|+++++|++|+++....|..+ ...+.+++++.++..
T Consensus 72 ~~~~~--~~~~~------~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a 125 (135)
T d1sena_ 72 KDEDF--SPDGG------YIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEA 125 (135)
T ss_dssp SCGGG--CTTCS------CSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHH
T ss_pred HHHHH--Hhhcc------cceeEEEECCCCeEEEEecCCCCCcchhccCCCHHHHHHHHHHH
Confidence 00000 11112 46999999999998865544322 234567777766553
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=9.5e-10 Score=79.96 Aligned_cols=92 Identities=15% Similarity=0.273 Sum_probs=66.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcC--cEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG--AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~--~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
.+|+++|.|| ++||++|+...|.+.++.++++..+ +.++-|+.+
T Consensus 23 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~--------------------------------- 68 (120)
T d1meka_ 23 AHKYLLVEFY-APWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT--------------------------------- 68 (120)
T ss_dssp HCSEEEEEEE-CSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETT---------------------------------
T ss_pred cCCcEEEEEE-CCCcCCccccchhhhhhcccccccccceeeeccccc---------------------------------
Confidence 3689999999 9999999999999999999887544 444444443
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
....+.+.|++. .+|+++++. +|+......+ ....+.+++++.|+.-.
T Consensus 69 -~~~~l~~~~~i~------~~Pt~~~~~-~G~~~~~~~~--~g~~~~~~l~~fi~~~~ 116 (120)
T d1meka_ 69 -EESDLAQQYGVR------GYPTIKFFR-NGDTASPKEY--TAGREADDIVNWLKKRT 116 (120)
T ss_dssp -TCCSSHHHHTCC------SSSEEEEEE-SSCSSSCEEC--CCCSSHHHHHHHHHTTS
T ss_pred -cchhHHHHhCCc------cCCeEEEEE-CCeEeeeEEe--cCCCCHHHHHHHHHHhh
Confidence 234677889999 899988884 4543221111 12345899999998754
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=4.3e-09 Score=78.58 Aligned_cols=90 Identities=13% Similarity=0.217 Sum_probs=64.5
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+|+++|.|| ++||++|+...|.+.++.+.|+..+..+..+..|. +
T Consensus 30 ~k~vlV~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~----------------------------------~ 74 (140)
T d2b5ea1 30 KKDVLVLYY-APWCGHCKRLAPTYQELADTYANATSDVLIAKLDH----------------------------------T 74 (140)
T ss_dssp TCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEG----------------------------------G
T ss_pred CCCEEEEEE-eccCcccchhHHHHHHHHHHHhccccceEEEeeec----------------------------------c
Confidence 678999999 99999999999999999999986555555545442 1
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
..+.+.|++. .+|+++++. +|+...... .......+++++.|+.-
T Consensus 75 ~~~~~~~~v~------~~Ptl~~f~-~g~~~~~~~--y~G~~t~~~l~~fi~~~ 119 (140)
T d2b5ea1 75 ENDVRGVVIE------GYPTIVLYP-GGKKSESVV--YQGSRSLDSLFDFIKEN 119 (140)
T ss_dssp GCCCSSCCCS------SSSEEEEEC-CTTSCCCCB--CCSCCCHHHHHHHHHHH
T ss_pred chhccccccc------cCCeEEEEE-CCEEcceeE--eCCCCCHHHHHHHHHHc
Confidence 1234567887 889999995 565443221 11234689999998763
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=8.9e-08 Score=72.05 Aligned_cols=92 Identities=16% Similarity=0.050 Sum_probs=66.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.+|+++|+|+ +.||++|+..-... .++.+.+. .++.++.|+.+.++
T Consensus 41 ~~K~llV~~~-~~~C~~C~~m~~~v~~d~~V~~~l~-~~fV~~~v~~~~~e----------------------------- 89 (147)
T d2dlxa1 41 QNKWLMINIQ-NVQDFACQCLNRDVWSNEAVKNIIR-EHFIFWQVYHDSEE----------------------------- 89 (147)
T ss_dssp HTCEEEEEEE-CSCTTTHHHHHHHTTTCHHHHHHHH-HTEEEEEEESSSHH-----------------------------
T ss_pred cCCcEEEEEe-cCCCCchHHHHHhccCCHHHHHHHh-hheeEeeecccchh-----------------------------
Confidence 5899999999 99999999875543 33433343 36888888777532
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcC-CCcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDR-EGIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~-~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
...+.+.|++. .+|++++||| +|++++.+ +. .+.++.+..|+.+..
T Consensus 90 ---~~~~~~~y~v~------~~Pti~~idp~~ge~v~~~-~~----~~~~~fl~~L~~fl~ 136 (147)
T d2dlxa1 90 ---GQRYIQFYKLG------DFPYVSILDPRTGQKLVEW-HQ----LDVSSFLDQVTGFLG 136 (147)
T ss_dssp ---HHHHHHHHTCC------SSSEEEEECTTTCCCCEEE-SS----CCHHHHHHHHHHHHH
T ss_pred ---hhhhhhheecC------ceeEEEEEeCCCCeEeccc-CC----CCHHHHHHHHHHHHh
Confidence 13567788888 8899999997 58888765 32 246888888877654
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.55 E-value=4.1e-07 Score=65.93 Aligned_cols=97 Identities=15% Similarity=0.074 Sum_probs=68.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc--CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI--GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
+.|++||.|| ++||++|+. |.+.++.+++++. .+.+.-|..+... .
T Consensus 18 ~~~~~lV~Fy-a~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~-----------------------------~ 65 (122)
T d2c0ga2 18 RFPYSVVKFD-IASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYG-----------------------------E 65 (122)
T ss_dssp TSSEEEEEEE-ESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSST-----------------------------T
T ss_pred cCCcEEEEEE-CCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccc-----------------------------c
Confidence 3589999999 999999994 9999999888643 4555556554310 0
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+.+..+.+.|++... .+|+++++..++.....+ .....++.+.+++.|+.-
T Consensus 66 ~~n~~l~~~~~i~~~----~~PTi~~f~~g~~~~~~~--~~~g~rt~~~l~~fv~~~ 116 (122)
T d2c0ga2 66 LENKALGDRYKVDDK----NFPSIFLFKGNADEYVQL--PSHVDVTLDNLKAFVSAN 116 (122)
T ss_dssp CTTHHHHHHTTCCTT----SCCEEEEESSSSSSEEEC--CTTSCCCHHHHHHHHHHH
T ss_pred ccCHHHHHHhhcccC----CCCcEEEEeCCccccccc--ccCCCCCHHHHHHHHHHh
Confidence 134789999988532 689999997665444332 233456789999988764
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=98.37 E-value=3.5e-07 Score=65.36 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=30.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI 115 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~ 115 (247)
.+|+++|.|| +.||++|++..|.+.++.+.+...
T Consensus 19 ~~k~vlV~fy-a~wC~~Ck~~~p~~~~la~~~~~~ 52 (116)
T d2djja1 19 DTKDVLIEFY-APWCGHCKALAPKYEELGALYAKS 52 (116)
T ss_dssp TTSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTS
T ss_pred CCCCEEEEEE-ecccccccccchHHHHHHHHHhcc
Confidence 3689999999 999999999999999999999754
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.27 E-value=5.3e-06 Score=59.91 Aligned_cols=87 Identities=8% Similarity=0.065 Sum_probs=59.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHH-------HHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcc
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALN-------EKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLK 153 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~-------~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (247)
+.+.++|.|| +.||++| ..+|... .+.+.++..++.|..|+.+.
T Consensus 27 ~~~~~~V~Fy-apwC~~~-~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~--------------------------- 77 (124)
T d1a8ya1 27 KYEVLALLYH-EPPEDDK-ASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK--------------------------- 77 (124)
T ss_dssp HCSEEEEEEE-CCCCSSH-HHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTT---------------------------
T ss_pred hCCeEEEEEE-CCCccch-hhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeec---------------------------
Confidence 3578899999 9999864 3444443 33344444467777776653
Q ss_pred eeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 154 IPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 154 ~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+.|++. .+|+.+++. +|+.+. +.| .++.+.+++.|..+
T Consensus 78 -------~~~l~~~~~I~------~yPTi~~f~-~g~~~~-y~G----~r~~~~l~~fi~~~ 120 (124)
T d1a8ya1 78 -------DAAVAKKLGLT------EEDSIYVFK-EDEVIE-YDG----EFSADTLVEFLLDV 120 (124)
T ss_dssp -------SHHHHHTTTCC------STTCEEEEE-SSSEEE-CCS----CCSHHHHHHHHHHH
T ss_pred -------ccchhhccccc------cCCcEEEec-cCccEE-eeC----CCCHHHHHHHHHHh
Confidence 35788999999 899999995 577653 222 45688899888654
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.12 E-value=2.4e-06 Score=68.07 Aligned_cols=88 Identities=10% Similarity=0.054 Sum_probs=65.4
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+.+|||.|| +.||+.|+...+.|.++..+|. ++.|+-|..+. .
T Consensus 120 ~~~Vvvhfy-~~~~~~C~~~~~~l~~lA~~~~--~vkF~ki~~~~-------------------------~--------- 162 (217)
T d2trcp_ 120 VTTIVVNIY-EDGVRGCDALNSSLECLAAEYP--MVKFCKIRASN-------------------------T--------- 162 (217)
T ss_dssp TCEEEEEEE-CTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHHH-------------------------H---------
T ss_pred CCeEEEEEE-cCCCCChhhhhhhHHHHhhhcc--cceEEEEcccc-------------------------c---------
Confidence 458899999 9999999999999999999986 68998885531 0
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC---CCCCHHHHHHHHHh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP---VGRSVEETLRLVRA 214 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~---~~~~~~~il~~l~~ 214 (247)
.+...|++. .+|+++++ ++|+++...+|... ..-..+++-..|..
T Consensus 163 -~~~~~~~i~------~lPtl~~y-k~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~ 210 (217)
T d2trcp_ 163 -GAGDRFSSD------VLPTLLVY-KGGELISNFISVAEQFAEDFFAADVESFLNE 210 (217)
T ss_dssp -TCSTTSCGG------GCSEEEEE-ETTEEEEEETTGGGGSCSSCCHHHHHHHHHT
T ss_pred -hhHHhCCCC------CCCeEEEE-ECCEEEEEEECccccccccCCHHHHHHHHHH
Confidence 012346777 88999999 89999999876443 23345555555544
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.58 E-value=2.2e-05 Score=54.53 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=53.5
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
.-++|+.|| +.||++|....+.|.++..+|. .++ |..|. |.+
T Consensus 15 ~~p~i~lft-~~~C~~C~~a~~~L~~~~~~~~---~~~--v~vd~--------------------------------~~~ 56 (100)
T d1wjka_ 15 ALPVLTLFT-KAPCPLCDEAKEVLQPYKDRFI---LQE--VDITL--------------------------------PEN 56 (100)
T ss_dssp CCCEEEEEE-CSSCHHHHHHHHHTSTTSSSSE---EEE--EETTS--------------------------------STT
T ss_pred CCCEEEEEE-CCCCCChHHHHHHHHHhhhhcc---eEE--Eeccc--------------------------------ccC
Confidence 447888888 9999999999999988865542 333 33433 234
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
.++.+.|++. +|.+ +| +|+.+.. +. .+.+++.+.|+.+.
T Consensus 57 ~~l~~~y~~~-------VPvl-~i--dg~~~~~--g~----~d~~~L~~~L~~l~ 95 (100)
T d1wjka_ 57 STWYERYKFD-------IPVF-HL--NGQFLMM--HR----VNTSKLEKQLRKLS 95 (100)
T ss_dssp HHHHHHSSSS-------CSEE-EE--SSSEEEE--SS----CCHHHHHHHHHSSS
T ss_pred HHHHHHhccc-------CCce-ee--cCceEEe--CC----CCHHHHHHHHHHHh
Confidence 5778888853 6854 45 4666533 32 34577778887764
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.00074 Score=50.84 Aligned_cols=97 Identities=12% Similarity=0.127 Sum_probs=57.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC--CChHhHH------------HHHHHhhcccccccc
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV--DSHFTHR------------AWINSLKKDNSLKKD 146 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~--d~~~~~~------------~~~~~~~~~~~~~~~ 146 (247)
..+.+|+.|+ -..||+|++..+.+.++.++. .+.++.+.. -.+++.. ++.+.+..
T Consensus 35 ~a~~tv~vF~-D~~CP~C~~~~~~l~~l~~~~---~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~------- 103 (169)
T d1v58a1 35 DAPVIVYVFA-DPFCPYCKQFWQQARPWVDSG---KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEA------- 103 (169)
T ss_dssp TCSEEEEEEE-CTTCHHHHHHHHHHHHHHHTT---SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHH-------
T ss_pred CCCEEEEEEE-CCCCcchHHHHHHHHHHHhcc---ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHH-------
Confidence 3567888888 999999999999998887554 366665532 1111111 11111111
Q ss_pred CCCCC-ccee-EE-------ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEE
Q psy15453 147 NRLDK-LKIP-LL-------SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQI 194 (247)
Q Consensus 147 ~~~~~-~~~~-~l-------~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~ 194 (247)
.+.+. .... .. .+.+..+++.+|+. .+|++|+.|++|++..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~------gTPt~i~~~~~g~~~~~ 154 (169)
T d1v58a1 104 SGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGAN------VTPAIYYMSKENTLQQA 154 (169)
T ss_dssp TTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCC------SSCEEEEEETTTEEEEE
T ss_pred hhhcccccccchhhHHHHHHHHHHHHHHHhcCCC------CCCEEEEECCCCCEEEe
Confidence 11100 0000 00 11125677888988 89999999999987554
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.92 E-value=0.0014 Score=46.46 Aligned_cols=93 Identities=14% Similarity=0.198 Sum_probs=58.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEE-EeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVG-VSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~-Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
++|.++|.|+ +.||..|.. |...++.+++++..-.+++ |....-. .+
T Consensus 20 ~~~~~lV~F~-~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd-----------------------------~~ 67 (122)
T d1g7ea_ 20 KSKFVLVKFD-TQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYG-----------------------------DK 67 (122)
T ss_dssp GSSEEEEEEE-CSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTT-----------------------------SC
T ss_pred hCCeEEEEEe-cCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeecc-----------------------------cc
Confidence 4689999999 999988864 7788888888754333332 3322100 01
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEE--EEecCCCCCCCHHHHHHHHHh
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQ--ITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~--~~~~~~~~~~~~~~il~~l~~ 214 (247)
.+..+...|++... .+|+.+++- +|.... .+.| .++.+.+++.|+.
T Consensus 68 ~n~~l~~~~~~~I~----~yPTi~~f~-~G~~~~~~~y~G----~rt~~~l~~fi~~ 115 (122)
T d1g7ea_ 68 LNMELSEKYKLDKE----SYPVFYLFR-DGDFENPVPYSG----AVKVGAIQRWLKG 115 (122)
T ss_dssp HHHHHHHHHTCSSS----SCEEEEEEE-SSCCCCCEEEES----CCCHHHHHHHHHT
T ss_pred ccHHHHHhhccccc----CCCeEEEEe-cCcccCceecCC----CCCHHHHHHHHHh
Confidence 23567777765433 789998884 453221 1212 4568999999876
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.0022 Score=47.43 Aligned_cols=43 Identities=14% Similarity=0.019 Sum_probs=31.6
Q ss_pred EEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEE
Q psy15453 75 IKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGV 122 (247)
Q Consensus 75 v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~V 122 (247)
+.+..=.+|.+|+.|. -.-||+|++..+.+.++.+ .++.++.+
T Consensus 19 iv~g~~~ak~tIv~Fs-D~~CpyC~~~~~~l~~~~~----~~~~~~~~ 61 (156)
T d1eeja1 19 IVYKAPQEKHVITVFT-DITCGYCHKLHEQMADYNA----LGITVRYL 61 (156)
T ss_dssp EEECCTTCCEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEE
T ss_pred eeecCCCCCEEEEEEe-CCCCHHHHHHHHHHHHhhc----cCceEEEE
Confidence 3333334688889998 9999999999999988753 35665555
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.24 E-value=0.0016 Score=47.96 Aligned_cols=41 Identities=22% Similarity=0.077 Sum_probs=30.9
Q ss_pred cCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEE
Q psy15453 77 LTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGV 122 (247)
Q Consensus 77 l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~V 122 (247)
...-.+|.+|+.|. -.-||+|++..+.+.++.+. +..++.+
T Consensus 21 ~g~~~ak~~I~~Fs-D~~CPyC~~~~~~l~~l~~~----~~~v~~~ 61 (150)
T d1t3ba1 21 YPAKNEKHVVTVFM-DITCHYCHLLHQQLKEYNDL----GITVRYL 61 (150)
T ss_dssp ECCTTCSEEEEEEE-CTTCHHHHHHHTTHHHHHHT----TEEEEEE
T ss_pred ECCCCCCEEEEEEE-CCCCHHHHHHhHHHHHHhcc----CceEEEE
Confidence 33335788888888 99999999999999888643 4555554
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=96.17 E-value=0.0058 Score=45.37 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=31.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVG 121 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~ 121 (247)
.++++|+.|+ .--||+|+...+.+.++.+++.+ .+.++-
T Consensus 17 ~~~~~Ivef~-d~~Cp~C~~~~~~~~~l~~~~~~-~~~~~~ 55 (181)
T d1beda_ 17 SSSPVVSEFF-SFYCPHCNTFEPIIAQLKQQLPE-GAKFQK 55 (181)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHTSCT-TCEEEE
T ss_pred CCCCEEEEEE-CCCCccchhhhhhhhhHhhhccc-ccceeE
Confidence 4788999999 99999999999999999888864 344443
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=96.00 E-value=0.014 Score=42.96 Aligned_cols=47 Identities=13% Similarity=0.027 Sum_probs=36.1
Q ss_pred EEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcC-cEEEEE
Q psy15453 75 IKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG-AEVVGV 122 (247)
Q Consensus 75 v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~-~~vl~V 122 (247)
+.+.+-.+++.|+.|+ ...||+|.+..+.+.++..++.+.+ +.++.+
T Consensus 17 ~~~G~~~a~v~I~ef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (172)
T d1z6ma1 17 LHIGESNAPVKMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIK 64 (172)
T ss_dssp EEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CeecCCCCCEEEEEEE-CCCCHhHHHHHHHHhhhhhhhccccceeeeec
Confidence 3355545678888898 9999999999999999999988643 444444
|
| >d1pn0a2 c.47.1.10 (A:462-662) Phenol hydroxylase, C-terminal domain {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Phenol hydroxylase, C-terminal domain species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=94.50 E-value=0.68 Score=34.99 Aligned_cols=160 Identities=13% Similarity=0.123 Sum_probs=98.1
Q ss_pred cccccccCCCCCCceeeeeecCCceeEEcCCC---CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh----------c
Q psy15453 49 GWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDY---RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK----------I 115 (247)
Q Consensus 49 ~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~---~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~----------~ 115 (247)
....+.+|..+|++.+.. -.|++++.|.+. -|++-|+.|- +.-. +..++..|.++.+.+.. .
T Consensus 13 lA~~~~iG~R~~sa~V~R--~aDa~p~~L~~~~~adGrfrI~vFa-Gd~~--~~~~~~~l~~la~~L~s~~s~~~r~t~~ 87 (201)
T d1pn0a2 13 LAKNCVVGTRFKSQPVVR--HSEGLWMHFGDRLVTDGRFRIIVFA-GKAT--DATQMSRIKKFAAYLDSENSVISRYTPK 87 (201)
T ss_dssp GBTTSCTTSBCCCCEEEE--TTTTEEEEGGGGCCCSSCEEEEEEE-ECTT--SHHHHHHHHHHHHHHHSTTSHHHHHSBT
T ss_pred HhcCCCCceecCCceEEE--ecCCCEeehhccccCCCcEEEEEEe-cCCC--ccchhhHHHHHHHHHhcccchhhhccCC
Confidence 345789999999999854 357899999754 4899999997 4332 33444445555444421 1
Q ss_pred ------CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcce-eEEe------cCCchHHHHhCCcccCCCccceeE
Q psy15453 116 ------GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKI-PLLS------DLTHEISRDYGVYLEDKGHSLRGL 182 (247)
Q Consensus 116 ------~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~------D~~~~~~~~~~~~~~~~g~~~p~~ 182 (247)
-++++.|...+..+.+- ..... .+... ...+ .... +..+...+.||+... .=..
T Consensus 88 ~~d~~~~i~~~~V~~~~~~~ie~--~dlP~--~~~~~----~~~~~~~~~d~~~~~~~~~~ay~~~GId~~-----~G~v 154 (201)
T d1pn0a2 88 GADRNSRIDVITIHSCHRDDIEM--HDFPA--PALHP----KWQYDFIYADCDSWHHPHPKSYQAWGVDET-----KGAV 154 (201)
T ss_dssp TSCTTSSEEEEEEESSCTTSCCG--GGSCT--TTTSC----TTCCSSEEECSCCSSSCCCCHHHHHTBCTT-----TCEE
T ss_pred CCCCCCcEEEEEEecCCCCcccc--ccccc--cccCC----cceEEeeecccccccCCcccHHHHhCCCCC-----ceEE
Confidence 27888887654222110 00000 00001 1111 1122 234689999998732 2379
Q ss_pred EEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhcc--cccCCccCCCCcC
Q psy15453 183 FIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYT--DEHGEACPSGWQP 231 (247)
Q Consensus 183 ~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~--~~~~~~~~~~~~~ 231 (247)
+||-|||.|-.+. ++ .+.+.+-+..+.+-.. .+.+.+..++|..
T Consensus 155 VVVRPDgyVg~v~--~L---dd~~~L~~yF~~fl~~~~~~~~~~~~~~~~~ 200 (201)
T d1pn0a2 155 VVVRPDGYTSLVT--DL---EGTAEIDRYFSGILVEPKEKSGAQTEADWTK 200 (201)
T ss_dssp EEECTTSBEEEEE--CT---TTHHHHHHHHHTTBCCCSSBCCSCCCCCTTC
T ss_pred EEECCCcceEEEE--cc---ccHHHHHHHHHHhhhCccccccccccccccc
Confidence 9999999999885 33 3478888888886553 3457788888874
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=91.14 E-value=0.17 Score=32.29 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=21.6
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 87 FFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 87 l~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
..|- .++||+|.+.-.-|++ +|+.+..+..+.
T Consensus 4 ~iys-~~~Cp~C~~ak~~L~~-------~~i~y~~~di~~ 35 (82)
T d1fova_ 4 EIYT-KETCPYCHRAKALLSS-------KGVSFQELPIDG 35 (82)
T ss_dssp EEEE-CSSCHHHHHHHHHHHH-------HTCCCEEEECTT
T ss_pred EEEe-CCCCHhHHHHHHHHHH-------cCCCeEEEeccc
Confidence 3444 8999999976555543 367777777664
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=90.75 E-value=0.18 Score=31.53 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=25.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
|+.|. .++||+|.+.-..|. ++|+.+.-+..+...
T Consensus 3 v~iYt-~~~C~~C~~ak~~L~-------~~~i~~~~~~i~~~~ 37 (74)
T d1r7ha_ 3 ITLYT-KPACVQCTATKKALD-------RAGLAYNTVDISLDD 37 (74)
T ss_dssp EEEEE-CTTCHHHHHHHHHHH-------HTTCCCEEEETTTCH
T ss_pred EEEEe-CCCChhHHHHHHHHH-------HcCCceEEEEccCCH
Confidence 45566 899999998766554 347888888877643
|
| >d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Atu2684-like domain: Hypothetical protein Atu2684 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=90.27 E-value=0.67 Score=35.66 Aligned_cols=40 Identities=20% Similarity=0.119 Sum_probs=32.0
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 83 KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 83 k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
+..||-.|.+.||..|+.--..|.++.++ .++..|++-+|
T Consensus 5 ~~aVVElFTSqgCssCPpAd~~L~~L~~~---~~Vi~La~HVd 44 (225)
T d2axoa1 5 VKGVVELFTSQGCASCPPADEALRKMIQK---GDVVGLSYHVD 44 (225)
T ss_dssp CCCEEEEEECTTCTTCHHHHHHHHHHHHH---TSSEEEEEECS
T ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHhhCC---CCEEEEEeccc
Confidence 34577777799999999999999988643 47888888876
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.26 E-value=1.1 Score=28.41 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=20.9
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHH
Q psy15453 87 FFFYPLDFTFVCPTEVLALNEKIDEF 112 (247)
Q Consensus 87 l~F~~a~~Cp~C~~~~~~l~~l~~~~ 112 (247)
|-.+ ++.|+.|.+.....++..+++
T Consensus 4 IkVl-g~gC~~C~~~~~~v~~a~~e~ 28 (77)
T d1iloa_ 4 IQIY-GTGCANCQMLEKNAREAVKEL 28 (77)
T ss_dssp EEEE-CSSSSTTHHHHHHHHHHHHHT
T ss_pred EEEe-CCCCccHHHHHHHHHHHHHHc
Confidence 4456 899999999999999888765
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=89.57 E-value=0.22 Score=31.12 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=25.5
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
|..|. .++||+|.+.-.-|.+. |+.+..+..+....
T Consensus 7 I~iYs-~~~C~~C~~ak~lL~~~-------~i~~~~~~v~~~~~ 42 (74)
T d1nm3a1 7 ISIFT-KPGCPFCAKAKQLLHDK-------GLSFEEIILGHDAT 42 (74)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHHH-------TCCCEEEETTTTCC
T ss_pred EEEEE-CCCCHHHHHHHHHHHHc-------CCCeEEEEccCcHH
Confidence 45666 99999999877666543 67777777765433
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=89.45 E-value=0.3 Score=30.65 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=24.7
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
+..|. .+|||+|.+.-..|. ++|+.+.-+..+...
T Consensus 3 i~iYs-~~~C~~C~~ak~~L~-------~~~i~y~~~~i~~~~ 37 (76)
T d1h75a_ 3 ITIYT-RNDCVQCHATKRAME-------NRGFDFEMINVDRVP 37 (76)
T ss_dssp EEEEE-CTTCHHHHHHHHHHH-------HTTCCCEEEETTTCH
T ss_pred EEEEe-CCCCccHHHHHHHHH-------hcCceeEEEeecCCH
Confidence 34555 899999998766664 347887777776533
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.37 E-value=2.3 Score=29.02 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=30.5
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCC--cEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREG--IVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G--~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
..+.+.|++. ..|++.|.+... .|++. ..+.+.....++..|-.+.
T Consensus 68 ~~~~~~~~ve------r~Ps~~i~~~g~~~gIrF~---GiP~GhEf~SlilaIl~vs 115 (119)
T d1a8la1 68 KELAKRYRID------RAPATTITQDGKDFGVRYF---GLPAGHEFAAFLEDIVDVS 115 (119)
T ss_dssp HHHHHHTTCC------SSSEEEEEETTBCCSEEEE---SCCCTTHHHHHHHHHHHHH
T ss_pred hhHHHhhccc------cCceEEEecCCcccceEEE---eccCchhHHHHHHHHHHhc
Confidence 4678889998 889888876422 36654 4666666666666665544
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=87.98 E-value=0.2 Score=32.30 Aligned_cols=37 Identities=11% Similarity=-0.051 Sum_probs=28.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
++.|- .++||+|.+.-.-|.++.-+++ ++.+.-+..+
T Consensus 3 vviys-k~~Cp~C~~aK~ll~~~~~~~~--~i~~~~~~~~ 39 (85)
T d1egoa_ 3 TVIFG-RSGCPYCVRAKDLAEKLSNERD--DFQYQYVDIR 39 (85)
T ss_dssp EEEEC-CTTSTHHHHHHHHHHHHHHHHS--SCEEEEECHH
T ss_pred EEEEe-CCCCHhHHHHHHHHHHcCCCCC--CceEEEEecC
Confidence 45666 8999999998888888877765 6777666543
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=87.65 E-value=2.2 Score=29.26 Aligned_cols=106 Identities=10% Similarity=-0.001 Sum_probs=61.0
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++.++.|+ ... .........+.+++++|+. .+.++.|..+. .
T Consensus 23 ~~pl~~lf~-~~~-~~~~~~~~~~~~vA~~~~~-ki~Fv~vd~~~----------------------------------~ 65 (133)
T d2djka1 23 GIPLAYIFA-ETA-EERKELSDKLKPIAEAQRG-VINFGTIDAKA----------------------------------F 65 (133)
T ss_dssp TSCEEEEEC-SCS-SSHHHHHHHHHHHHHSSTT-TSEEEEECTTT----------------------------------T
T ss_pred CCCEEEEEe-CCc-hHHHHHHHHHHHHHHHhcC-ceEEEEEeHHH----------------------------------h
Confidence 567666555 432 3455566677777777654 35555543221 1
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhccccc----CCccCCCCc
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEH----GEACPSGWQ 230 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~~~----~~~~~~~~~ 230 (247)
....+.||+..+ ..|.+++++.++...+.+ .....-+.+.+.+.++.+....-+ .+--|.+|.
T Consensus 66 ~~~l~~~gl~~~----~~P~~~i~~~~~~~~~~~--~~~~~i~~~~i~~Fi~d~~~Gkl~p~~kSe~iPe~~d 132 (133)
T d2djka1 66 GAHAGNLNLKTD----KFPAFAIQEVAKNQKFPF--DQEKEITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQE 132 (133)
T ss_dssp GGGTTTTTCCSS----SSSEEEEECTTTCCBCCC--CSSSCCCHHHHHHHHHHHHHTCCCCSSCCCCCCTTSC
T ss_pred HHHHHHhcCCcc----cCCcEEEEEcCCCceecC--CccccCCHHHHHHHHHHHHcCCCCcccccCCCCCCCC
Confidence 244455777533 679999999887766554 222334567788888776554322 344555553
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=86.87 E-value=0.092 Score=38.76 Aligned_cols=43 Identities=21% Similarity=0.125 Sum_probs=31.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh--cCcEEEEEeC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK--IGAEVVGVSV 124 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~--~~~~vl~Vs~ 124 (247)
.++++|+.|+ .-.||+|++.-+.|..+.+..+. .++.++-...
T Consensus 17 ~~~~~VvEff-dy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 61 (188)
T d1fvka_ 17 AGAPQVLEFF-SFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV 61 (188)
T ss_dssp TTCCSEEEEE-CTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEEC
T ss_pred CCCCEEEEEE-CCCChhhHHHHHHHHHHHHHhhccCCceEEEEEec
Confidence 5788999999 99999999998888666554332 2455555543
|
| >d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.40 E-value=1.2 Score=29.99 Aligned_cols=33 Identities=15% Similarity=-0.017 Sum_probs=22.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHH
Q psy15453 93 DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132 (247)
Q Consensus 93 ~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~ 132 (247)
+.||+|.+.-.-|+ ..++.+-.+..+...+...
T Consensus 28 p~Cp~c~~ak~lL~-------~~~i~~~~~~v~~~~~~~~ 60 (109)
T d1wika_ 28 AKCGFSKQILEILN-------STGVEYETFDILEDEEVRQ 60 (109)
T ss_dssp CCSSTHHHHHHHHH-------HTCSCEEEEESSSCHHHHH
T ss_pred CCChHHHHHHHHHH-------hcCCCceEEEecccHHHHH
Confidence 67999998766554 3377787787776444333
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.21 E-value=0.23 Score=33.44 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=16.6
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEK 108 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l 108 (247)
|+.|. .+|||+|.+.-.-|.++
T Consensus 14 Vviys-k~~Cp~C~~ak~ll~~~ 35 (105)
T d1ktea_ 14 VVVFI-KPTCPFCRKTQELLSQL 35 (105)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHHS
T ss_pred EEEEE-CCCCchHHHHHHHHHHh
Confidence 55667 99999999877666544
|
| >d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=81.53 E-value=0.097 Score=39.68 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=31.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHH---HHHHHHHhcCcEEEEEeC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALN---EKIDEFHKIGAEVVGVSV 124 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~---~l~~~~~~~~~~vl~Vs~ 124 (247)
.+++.|+-|| .-+||+|.+..|.|. ++.+.+.+ ++.|+-+..
T Consensus 112 ~~~~~VvEff-sy~Cp~C~~~e~~l~~~~~~~~~~~~-~v~~~~~~~ 156 (195)
T d1un2a_ 112 AGAPQVLEFF-SFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHV 156 (195)
T ss_dssp TTCCSEEEEE-CTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEEC
T ss_pred CCCceEEEEE-ecCCccccccchhhhHHHHHHhhcCC-CcEEEEEec
Confidence 4789999999 999999999988775 44444443 667766544
|