Psyllid ID: psy15553

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
MATVNVNRNVTDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVNGSHDVVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQFNHKLNTFILKNPPNLNPAVQGSSLTEGKRPKRISKKQESNGDMTKSDEESDPTVVAPEKVADEVNDDDGGWLADVSEEAVRARALDLSSGVKGLTISEDLEKTEKERMDIFYTCVKTALEKNNVDAKELLSEAERLEVKTKAPLILAELLFADEDKIPIQAKKHRILFFGSNQFTWRSVGFYRRQINTIATLINQCQLILLDKQSTVLRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEPFIKWLREAEEEDSDSEESDDDLEIEYNDRARVTLQTETIKPKVIKKDEDEDGTNDKDEDEDGTNDVDIDAI
ccccccccccccccccccccccEEEEEEcccccEEEEEcHHHHHHHHcccccHHHHHHHHHHcccccccccccEEEEEEcccHHHHHHHHHHHHccccccccccccccEEEEEccccEEEEccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccc
ccEEEEccccccccEEcccccEEEEEEcccccEEEEEEcHHHHHHHHcccccccHHEcccEccccEEcccccccEEEcccccHHHHHHHHHHHHHHHEEccccccccEEEEEEcccccEEEcccccccccccccHcccEEEEEEcccccccccccccHHHHHHHccccccccccccccccccccccHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccEccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEcccccccEEEEEccccccccccccccccccccccccccccccccc
MATVNVNRNVTDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAkaigrpptyptkyfgcelgaqtkldhkndrfivngshDVVKLQDLLDGFIRkfvlcpecdnpetdlvvsakKGTIQQVCKAcgfhgmlqfnHKLNTFilknppnlnpavqgssltegkrpkriskkqesngdmtksdeesdptvvapekvadevndddggwlaDVSEEAVRARALDLssgvkgltisedLEKTEKERMDIFYTCVKTALEKNNVDAKELLSEAERLEVKTKAPLILAELLfadedkipiqaKKHRILFfgsnqftwrsVGFYRRQINTIATLINQCQLILLDKQSTVLRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEPFIKWLREaeeedsdseesdddleiEYNDRARVTLqtetikpkvikkdededgtndkdededgtndvdidai
matvnvnrnvtdafyrykmpkliakvegkgngIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVNGSHDVVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQFNHKLNTFILKNPPNLNPAvqgssltegkrpkriskkqesngdmtksdeesdptvvapekvadevndddggWLADVSEEAVRARAldlssgvkgltisedlektekERMDIFYTCVKTALEKNNVDAKELLSeaerlevktkAPLILAELLFADEDKIPIQAKKHRILFFGSNQFTWRSVGFYRRQINTIATLINQCQLILLDKQSTVLRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKtskkyvskelsaeirsraepFIKWLReaeeedsdseesdddleieyndrarvtlqtetikpkvikkdededgtndkdededgtndvdidai
MATVNVNRNVTDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVNGSHDVVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQFNHKLNTFILKNPPNLNPAVQGSSLTEGKRPKRISKKQESNGDMTKSDEESDPTVVAPEKVADEVNDDDGGWLADVSEEAVRARALDLSSGVKGLTISEDLEKTEKERMDIFYTCVKTALEKNNVDAKELLSEAERLEVKTKAPLILAELLFADEDKIPIQAKKHRILFFGSNQFTWRSVGFYRRQINTIATLINQCQLILLDKQSTVLRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEPFIKWLREAeeedsdseesdddLEIEYNDRARVTLQTETIKPKVIKKDEDEDGTNDKDEDEDGTNDVDIDAI
*****VNRNVTDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVNGSHDVVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQFNHKLNTFILK************************************************************WLADV****VRARALDL***VKGLTI**********RMDIFYTCVKTALEKNNVDAKELLSEAERLEVKTKAPLILAELLFADEDKIPIQAKKHRILFFGSNQFTWRSVGFYRRQINTIATLINQCQLILLDKQSTVLRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVS************PFIKWL******************************************************************
************AFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVNGSHDVVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQFNH****************************************************************DDGGWLADV********************************MDIFYT****************LSEAERLEVKTKAPLILAELLFADEDKIPIQAKKHRILFFGSNQFTWRSVGFYRRQINTIATLINQCQLILLDKQSTVLRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTS******EL*AEIRSRAEPFIK************************************************************NDVDIDAI
MATVNVNRNVTDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVNGSHDVVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQFNHKLNTFILKNPPNLNPAV**********************************VVAPEKVADEVNDDDGGWLADVSEEAVRARALDLSSGVKGLTISEDLEKTEKERMDIFYTCVKTALEKNNVDAKELLSEAERLEVKTKAPLILAELLFADEDKIPIQAKKHRILFFGSNQFTWRSVGFYRRQINTIATLINQCQLILLDKQSTVLRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEPFIKWLRE**************LEIEYNDRARVTLQTETIKPKVIKKD***************TNDVDIDAI
*ATVNVNRNVTDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVNGSHDVVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQFNHKLNTFILKNPPN****************************************************************************VKGLTISEDLEKTEKERMDIFYTCVKTALEKNNVDAKELLSEAERLEVKTKAPLILAELLFADEDKIPIQAKKHRILFFGSNQFTWRSVGFYRRQINTIATLINQCQLILLDKQSTVLRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEPFIKWLREAEE*********DDLEIEYNDRARVTLQTETIK*************************V*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATVNVNRNVTDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVNGSHDVVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQFNHKLNTFILKNPPNLNPAVQGSSLTEGKRPKRISKKQESNGDMTKSDEESDPTVVAPEKVADEVNDDDGGWLADVSEEAVRARALDLSSGVKGLTISEDLEKTEKERMDIFYTCVxxxxxxxxxxxxxxxxxxxxxxxxTKAPLILAELLFADEDKIPIQAKKHRILFFGSNQFTWRSVGFYRRQINTIATLINQCQLILLDKQSTVLRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEPFIKWLREAEEEDSDSEESDDDLEIEYNDRARVTLQTETIKPKVIKKDEDEDGTNDKDEDEDGTNDVDIDAI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query489 2.2.26 [Sep-21-2011]
Q9VXK6464 Eukaryotic translation in yes N/A 0.783 0.825 0.563 1e-138
P59325429 Eukaryotic translation in yes N/A 0.840 0.958 0.504 1e-111
Q07205429 Eukaryotic translation in yes N/A 0.840 0.958 0.502 1e-110
P55010431 Eukaryotic translation in yes N/A 0.840 0.953 0.504 1e-110
Q5R4L0431 Eukaryotic translation in yes N/A 0.844 0.958 0.493 1e-108
Q22918436 Eukaryotic translation in no N/A 0.738 0.827 0.441 1e-84
Q09689395 Probable eukaryotic trans yes N/A 0.742 0.918 0.389 2e-67
P38431405 Eukaryotic translation in yes N/A 0.748 0.903 0.347 4e-59
Q9C8F1439 Probable eukaryotic trans yes N/A 0.824 0.917 0.334 4e-53
Q26891162 Eukaryotic translation in no N/A 0.323 0.975 0.625 1e-51
>sp|Q9VXK6|IF5_DROME Eukaryotic translation initiation factor 5 OS=Drosophila melanogaster GN=eIF5 PE=1 SV=1 Back     alignment and function desciption
 Score =  492 bits (1266), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 254/451 (56%), Positives = 308/451 (68%), Gaps = 68/451 (15%)

Query: 1   MATVNVNRNVTDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGC 60
           MATVNVNR+VTD FYRYKMP+L AKVEGKGNGIKTV+VNMA+VA+AIGRP TYPTKYFGC
Sbjct: 1   MATVNVNRSVTDIFYRYKMPRLQAKVEGKGNGIKTVLVNMAEVARAIGRPATYPTKYFGC 60

Query: 61  ELGAQTKLDHKNDRFIVNGSHDVVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQ 120
           ELGAQT  DHKN+RF+VNGSHDV KLQDLLDGFIRKFVLCPECDNPET+L VSAK  TI 
Sbjct: 61  ELGAQTLFDHKNERFVVNGSHDVNKLQDLLDGFIRKFVLCPECDNPETNLTVSAKNQTIS 120

Query: 121 QVCKACGFHGMLQFNHKLNTFILKNPPNLNPAVQGSSLTEGKRPKRISKKQES------- 173
           Q CKACGFHG+L+ NHK+NTFI+KNPP+LNPA QGSSLTEGKR ++  +K ++       
Sbjct: 121 QSCKACGFHGLLKVNHKVNTFIVKNPPSLNPAAQGSSLTEGKRSRKQKQKNDNADGSMTN 180

Query: 174 --------------NGDMTKSDEESDPTVVAPEKVADEVNDDDGGWLADVSEEAVRARAL 219
                         NG    S  E++ +   PEK A +  DDD GW  DVS+EA+RAR  
Sbjct: 181 NSLANNSGGESDGGNGTNQASQTEAEISAAIPEKTAKD--DDDEGWSVDVSKEAIRARLQ 238

Query: 220 DLSSGVKGLTISEDLEKTEKERMDIFYTCVKTALEKNNVD----AKELLSEAERLEVKTK 275
           DL+ G KG+TIS+D +KTEKER+DIFY  VK   +K  +D     KEL+ EAERL++  K
Sbjct: 239 DLTDGAKGMTISDDYDKTEKERIDIFYELVKDKRDKKQLDDVQTHKELVIEAERLDIINK 298

Query: 276 APLILAELLFADEDKIPIQAKKHRILFFGSNQFTWRSVGFYRRQINTIATLINQCQLILL 335
           APL+LAELLF +   I    +K+R L                                  
Sbjct: 299 APLVLAELLFTEN--IIKDVQKNRPL---------------------------------- 322

Query: 336 DKQSTVLRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEW 395
                +LRFT  + KAQRYL+ G+EQ + LHK  L+S V GI KLFYD DIL+E V+LEW
Sbjct: 323 -----LLRFTLNNPKAQRYLIGGVEQTVELHKGILMSKVAGIFKLFYDLDILDEAVILEW 377

Query: 396 AEKTSKKYVSKELSAEIRSRAEPFIKWLREA 426
           A+K SK++VSK ++AEI  +A PF+ WL+ A
Sbjct: 378 AQKVSKRHVSKNIAAEIHEKAMPFVLWLKNA 408
Catalyzes the hydrolysis of GTP bound to the 40S ribosomal initiation complex (40S.mRNA.Met-tRNA[F].eIF-2.GTP) with the subsequent joining of a 60S ribosomal subunit resulting in the release of eIF-2 and the guanine nucleotide. The subsequent joining of a 60S ribosomal subunit results in the formation of a functional 80S initiation complex (80S.mRNA.Met-tRNA[F]).
Drosophila melanogaster (taxid: 7227)
>sp|P59325|IF5_MOUSE Eukaryotic translation initiation factor 5 OS=Mus musculus GN=Eif5 PE=1 SV=1 Back     alignment and function description
>sp|Q07205|IF5_RAT Eukaryotic translation initiation factor 5 OS=Rattus norvegicus GN=Eif5 PE=1 SV=1 Back     alignment and function description
>sp|P55010|IF5_HUMAN Eukaryotic translation initiation factor 5 OS=Homo sapiens GN=EIF5 PE=1 SV=2 Back     alignment and function description
>sp|Q5R4L0|IF5_PONAB Eukaryotic translation initiation factor 5 OS=Pongo abelii GN=EIF5 PE=2 SV=1 Back     alignment and function description
>sp|Q22918|IF5_CAEEL Eukaryotic translation initiation factor 5 OS=Caenorhabditis elegans GN=C37C3.2 PE=2 SV=2 Back     alignment and function description
>sp|Q09689|IF5_SCHPO Probable eukaryotic translation initiation factor 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F7.05c PE=3 SV=1 Back     alignment and function description
>sp|P38431|IF5_YEAST Eukaryotic translation initiation factor 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIF5 PE=1 SV=1 Back     alignment and function description
>sp|Q9C8F1|IF5Y_ARATH Probable eukaryotic translation initiation factor 5-1 OS=Arabidopsis thaliana GN=At1g36730 PE=2 SV=1 Back     alignment and function description
>sp|Q26891|IF5_TRICA Eukaryotic translation initiation factor 5 (Fragment) OS=Tribolium castaneum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query489
340718966454 PREDICTED: eukaryotic translation initia 0.781 0.841 0.628 1e-150
66515288454 PREDICTED: eukaryotic translation initia 0.781 0.841 0.628 1e-150
350396084454 PREDICTED: eukaryotic translation initia 0.781 0.841 0.628 1e-150
383848991454 PREDICTED: eukaryotic translation initia 0.781 0.841 0.626 1e-150
195132667473 GI21522 [Drosophila mojavensis] gi|19390 0.834 0.862 0.573 1e-147
195448024471 GK25118 [Drosophila willistoni] gi|19416 0.901 0.936 0.560 1e-147
195175536472 GL11549 [Drosophila persimilis] gi|19410 0.832 0.862 0.566 1e-147
195399327473 GJ15997 [Drosophila virilis] gi|19415069 0.903 0.934 0.534 1e-147
198454584472 GA27482 [Drosophila pseudoobscura pseudo 0.832 0.862 0.566 1e-147
242012479447 eukaryotic translation initiation factor 0.820 0.897 0.612 1e-146
>gi|340718966|ref|XP_003397930.1| PREDICTED: eukaryotic translation initiation factor 5-like [Bombus terrestris] Back     alignment and taxonomy information
 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 276/439 (62%), Positives = 321/439 (73%), Gaps = 57/439 (12%)

Query: 1   MATVNVNRNVTDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGC 60
           M +VNVNRNV+DAFYRYKMP++ AKVEGKGNGIKTVIVNM DVAKAIGRP TYPTKYFGC
Sbjct: 1   MGSVNVNRNVSDAFYRYKMPRIQAKVEGKGNGIKTVIVNMVDVAKAIGRPATYPTKYFGC 60

Query: 61  ELGAQTKLDHKNDRFIVNGSHDVVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQ 120
           ELGAQT+ D KN+RFIVNGSHD  KLQDLLDGFIRK+VLCP CDNPET+L+VS+KKGTI 
Sbjct: 61  ELGAQTQFDFKNERFIVNGSHDATKLQDLLDGFIRKYVLCPACDNPETELMVSSKKGTIS 120

Query: 121 QVCKACGFHGMLQFNHKLNTFILKNPPNLNPAVQGSSLTEGKRPKRISKKQ--------- 171
           Q CKACG+HG+L+ NHKLNT+ILKNPP+LNPAVQGSSLTEGKR KR  +           
Sbjct: 121 QGCKACGYHGLLESNHKLNTYILKNPPSLNPAVQGSSLTEGKRGKRSKRANGETTTTTTT 180

Query: 172 -ESNGDMTKSDEE----SDPTVVAPEKVADEVNDDDGGWLADVSEEAVRARALDLSSGVK 226
             +NGD + S E     +D  V APEK+ADE N DD  W  DVSEEAVRAR  DL+ G K
Sbjct: 181 ATANGDRSGSPENDTSTTDIVVEAPEKMADE-NGDDDNWAVDVSEEAVRARLQDLTDGAK 239

Query: 227 GLTISEDLEKTEKERMDIFYTCVKTALEKNNVD-AKELLSEAERLEVKTKAPLILAELLF 285
           G+TIS+DL+KTEKERMD+FY  VK   +   +D  KEL++EAERLE+KTKAPLILAELLF
Sbjct: 240 GMTISDDLDKTEKERMDMFYKLVKCRRDAGQLDNHKELIAEAERLEIKTKAPLILAELLF 299

Query: 286 ADEDKIPIQAKKHRILFFGSNQFTWRSVGFYRRQINTIATLINQCQLILLDKQSTVLRFT 345
             +  I  QAKK+R+L                                       +LRFT
Sbjct: 300 --DQNIAAQAKKYRVL---------------------------------------LLRFT 318

Query: 346 HEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVS 405
           H+DIKAQ+YL+ GIEQVIALHK+ L+  VPGILKLFYD DILEEK L EW+ K +KKYVS
Sbjct: 319 HDDIKAQKYLIRGIEQVIALHKDALMPKVPGILKLFYDADILEEKALFEWSNKVTKKYVS 378

Query: 406 KELSAEIRSRAEPFIKWLR 424
           K+LS EI  +A PF+ WL+
Sbjct: 379 KDLSQEIHDKAAPFLTWLQ 397

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|66515288|ref|XP_392511.2| PREDICTED: eukaryotic translation initiation factor 5 isoform 1 [Apis mellifera] gi|380012547|ref|XP_003690341.1| PREDICTED: eukaryotic translation initiation factor 5-like [Apis florea] Back     alignment and taxonomy information
>gi|350396084|ref|XP_003484435.1| PREDICTED: eukaryotic translation initiation factor 5-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383848991|ref|XP_003700130.1| PREDICTED: eukaryotic translation initiation factor 5-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|195132667|ref|XP_002010764.1| GI21522 [Drosophila mojavensis] gi|193907552|gb|EDW06419.1| GI21522 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195448024|ref|XP_002071476.1| GK25118 [Drosophila willistoni] gi|194167561|gb|EDW82462.1| GK25118 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|195175536|ref|XP_002028501.1| GL11549 [Drosophila persimilis] gi|194103727|gb|EDW25770.1| GL11549 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|195399327|ref|XP_002058272.1| GJ15997 [Drosophila virilis] gi|194150696|gb|EDW66380.1| GJ15997 [Drosophila virilis] Back     alignment and taxonomy information
>gi|198454584|ref|XP_002137910.1| GA27482 [Drosophila pseudoobscura pseudoobscura] gi|198132861|gb|EDY68468.1| GA27482 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|242012479|ref|XP_002426960.1| eukaryotic translation initiation factor, putative [Pediculus humanus corporis] gi|212511189|gb|EEB14222.1| eukaryotic translation initiation factor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query489
FB|FBgn0030719464 eIF5 "eIF5" [Drosophila melano 0.368 0.387 0.779 2.8e-103
UNIPROTKB|I3LLC8365 EIF5 "Uncharacterized protein" 0.302 0.405 0.673 8.5e-90
MGI|MGI:95309429 Eif5 "eukaryotic translation i 0.736 0.839 0.498 1.7e-88
ZFIN|ZDB-GENE-030131-975429 eif5 "eukaryotic translation i 0.730 0.832 0.498 2.1e-88
RGD|619861429 Eif5 "eukaryotic translation i 0.736 0.839 0.496 3.5e-88
UNIPROTKB|Q07205429 Eif5 "Eukaryotic translation i 0.736 0.839 0.496 3.5e-88
UNIPROTKB|Q5ZIE0430 EIF5 "Uncharacterized protein" 0.734 0.834 0.494 9.1e-88
UNIPROTKB|F1N0F7429 EIF5 "Uncharacterized protein" 0.736 0.839 0.488 3.9e-87
UNIPROTKB|E1C073431 EIF5 "Uncharacterized protein" 0.734 0.832 0.493 8.1e-87
UNIPROTKB|E2RJU3430 EIF5 "Uncharacterized protein" 0.736 0.837 0.486 1.7e-86
FB|FBgn0030719 eIF5 "eIF5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 762 (273.3 bits), Expect = 2.8e-103, Sum P(2) = 2.8e-103
 Identities = 141/181 (77%), Positives = 161/181 (88%)

Query:     1 MATVNVNRNVTDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGC 60
             MATVNVNR+VTD FYRYKMP+L AKVEGKGNGIKTV+VNMA+VA+AIGRP TYPTKYFGC
Sbjct:     1 MATVNVNRSVTDIFYRYKMPRLQAKVEGKGNGIKTVLVNMAEVARAIGRPATYPTKYFGC 60

Query:    61 ELGAQTKLDHKNDRFIVNGSHDVVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQ 120
             ELGAQT  DHKN+RF+VNGSHDV KLQDLLDGFIRKFVLCPECDNPET+L VSAK  TI 
Sbjct:    61 ELGAQTLFDHKNERFVVNGSHDVNKLQDLLDGFIRKFVLCPECDNPETNLTVSAKNQTIS 120

Query:   121 QVCKACGFHGMLQFNHKLNTFILKNPPNLNPAVQGSSLTEGKRPKRISKKQES-NGDMTK 179
             Q CKACGFHG+L+ NHK+NTFI+KNPP+LNPA QGSSLTEGKR ++  +K ++ +G MT 
Sbjct:   121 QSCKACGFHGLLKVNHKVNTFIVKNPPSLNPAAQGSSLTEGKRSRKQKQKNDNADGSMTN 180

Query:   180 S 180
             +
Sbjct:   181 N 181
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0006413 "translational initiation" evidence=ISS
GO:0005829 "cytosol" evidence=ISS
GO:0016070 "RNA metabolic process" evidence=IEA
GO:0022008 "neurogenesis" evidence=IMP
UNIPROTKB|I3LLC8 EIF5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:95309 Eif5 "eukaryotic translation initiation factor 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-975 eif5 "eukaryotic translation initiation factor 5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|619861 Eif5 "eukaryotic translation initiation factor 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q07205 Eif5 "Eukaryotic translation initiation factor 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIE0 EIF5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N0F7 EIF5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1C073 EIF5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RJU3 EIF5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R4L0IF5_PONABNo assigned EC number0.49340.84450.9582yesN/A
Q9VXK6IF5_DROMENo assigned EC number0.56310.78320.8254yesN/A
Q9C8F1IF5Y_ARATHNo assigned EC number0.33400.82410.9179yesN/A
Q09689IF5_SCHPONo assigned EC number0.38940.74230.9189yesN/A
P59325IF5_MOUSENo assigned EC number0.50430.84040.9580yesN/A
P55010IF5_HUMANNo assigned EC number0.50430.84040.9535yesN/A
Q07205IF5_RATNo assigned EC number0.50210.84040.9580yesN/A
P38431IF5_YEASTNo assigned EC number0.34750.74840.9037yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
smart00653110 smart00653, eIF2B_5, domain present in translation 6e-48
pfam01873125 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5 1e-45
cd11561157 cd11561, W2_eIF5, C-terminal W2 domain of eukaryot 2e-45
pfam0202075 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon 2e-21
smart0051583 smart00515, eIF5C, Domain at the C-termini of GCD6 3e-18
PRK03988138 PRK03988, PRK03988, translation initiation factor 6e-17
cd11558169 cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of 4e-13
PRK12336201 PRK12336, PRK12336, translation initiation factor 6e-13
TIGR00311133 TIGR00311, aIF-2beta, translation initiation facto 4e-12
COG1601151 COG1601, GCD7, Translation initiation factor 2, be 5e-11
cd11560194 cd11560, W2_eIF5C_like, C-terminal W2 domain of th 2e-06
cd11473135 cd11473, W2, C-terminal domain of eIF4-gamma/eIF5/ 6e-04
>gnl|CDD|214764 smart00653, eIF2B_5, domain present in translation initiation factor eIF2B and eIF5 Back     alignment and domain information 
 Score =  160 bits (407), Expect = 6e-48
 Identities = 56/116 (48%), Positives = 71/116 (61%), Gaps = 6/116 (5%)

Query: 14  FYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKND 73
           FYR+KMP      EGKG   KTVIVN AD+AKA+ RPP +  K+   ELG Q  +D K  
Sbjct: 1   FYRFKMPPPQVLREGKG---KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDGKG- 56

Query: 74  RFIVNGSHDVVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFH 129
           R IVNG     KLQDLL  +I+++VLCPEC +P+T+L+           C+ACG  
Sbjct: 57  RLIVNGRFTPKKLQDLLRRYIKEYVLCPECGSPDTELIKE--NRLFFLKCEACGAR 110

Length = 110
>gnl|CDD|216754 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5 Back     alignment and domain information
>gnl|CDD|211399 cd11561, W2_eIF5, C-terminal W2 domain of eukaryotic translation initiation factor 5 Back     alignment and domain information
>gnl|CDD|216850 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon Back     alignment and domain information
>gnl|CDD|214705 smart00515, eIF5C, Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5 Back     alignment and domain information
>gnl|CDD|235189 PRK03988, PRK03988, translation initiation factor IF-2 subunit beta; Validated Back     alignment and domain information
>gnl|CDD|211396 cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of eukaryotic translation initiation factor 2B epsilon Back     alignment and domain information
>gnl|CDD|183451 PRK12336, PRK12336, translation initiation factor IF-2 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|129411 TIGR00311, aIF-2beta, translation initiation factor aIF-2, beta subunit, putative Back     alignment and domain information
>gnl|CDD|224517 COG1601, GCD7, Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|211398 cd11560, W2_eIF5C_like, C-terminal W2 domain of the eukaryotic translation initiation factor 5C and similar proteins Back     alignment and domain information
>gnl|CDD|211395 cd11473, W2, C-terminal domain of eIF4-gamma/eIF5/eIF2b-epsilon Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 489
KOG2767|consensus400 100.0
PF01873125 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: 100.0
smart00653110 eIF2B_5 domain present in translation initiation f 100.0
TIGR00311133 aIF-2beta translation initiation factor aIF-2, bet 100.0
PRK03988138 translation initiation factor IF-2 subunit beta; V 100.0
PRK12336201 translation initiation factor IF-2 subunit beta; P 100.0
KOG2768|consensus231 99.97
COG1601151 GCD7 Translation initiation factor 2, beta subunit 99.95
PF0202084 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003 99.87
smart0051583 eIF5C Domain at the C-termini of GCD6, eIF-2B epsi 99.77
KOG2297|consensus412 99.62
KOG1461|consensus673 99.5
COG1326201 Uncharacterized archaeal Zn-finger protein [Genera 92.8
PF1267749 DUF3797: Domain of unknown function (DUF3797); Int 92.72
PRK00464154 nrdR transcriptional regulator NrdR; Validated 91.47
PF0125383 SUI1: Translation initiation factor SUI1; InterPro 91.41
TIGR0244359 conserved hypothetical metal-binding protein. Memb 91.35
PF0952671 DUF2387: Probable metal-binding protein (DUF2387); 90.99
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 87.01
PF1420555 Cys_rich_KTR: Cysteine-rich KTR 86.82
smart0044040 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo 86.56
PF1435461 Lar_restr_allev: Restriction alleviation protein L 85.98
TIGR0365553 anti_R_Lar restriction alleviation protein, Lar fa 85.45
TIGR00244147 transcriptional regulator NrdR. Members of this al 85.14
PF0109639 TFIIS_C: Transcription factor S-II (TFIIS); InterP 85.06
PF1480334 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C. 84.23
PRK0971064 lar restriction alleviation and modification prote 84.06
cd00674353 LysRS_core_class_I catalytic core domain of class 83.17
COG199789 RPL43A Ribosomal protein L37AE/L43A [Translation, 82.43
>KOG2767|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.7e-117  Score=887.28  Aligned_cols=388  Identities=55%  Similarity=0.916  Sum_probs=339.8

Q ss_pred             ceeccCCCCCCccccccCCCcEEEEeccCCCeeEEEechHHHHHHhCCCCChhhhHHHHhhcCceeeecCCCeEEEEecc
Q psy15553          2 ATVNVNRNVTDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVNGSH   81 (489)
Q Consensus         2 ~~iNi~~~~~D~~yRykmP~~~~kieGkgngiKTvi~N~~dIakaL~R~p~~~~kyf~~ELGa~~~~d~~~~r~iinG~~   81 (489)
                      |+|||||++.|+|||||||++++||||+||||||+|+||.|||+||+|||.|++|||||||||||+||.+++||||||+|
T Consensus         1 a~iNInrsn~D~FYRYKMPrl~aKvEGKGNGIKTvIvNm~eIakAL~RPp~Y~tKyFGcELGAQT~fd~kn~ryiVNG~H   80 (400)
T KOG2767|consen    1 ASININRSNRDPFYRYKMPRLQAKVEGKGNGIKTVIVNMVEIAKALGRPPLYPTKYFGCELGAQTKFDVKNGRYIVNGAH   80 (400)
T ss_pred             CcccccccccchhhhhccchhhhhccccCCCeeeeeecHHHHHHHhCCCCCcccccceeeccccccccccCCeeeecccc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHhhcccCCCCCCCCceEEEeccCCeEeeecccccCcccccchhhhhhhhhcCCCCCCCCCCCCccccc
Q psy15553         82 DVVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQFNHKLNTFILKNPPNLNPAVQGSSLTEG  161 (489)
Q Consensus        82 ~~~~lq~~L~~fI~~yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~~~~kl~~~i~kn~p~~~~~~~g~k~~k~  161 (489)
                      ++.+||+||++||++|||||+|+||||.|+++ +++++.++|+|||+++.+++||||++|||||||++.+++.+ |++..
T Consensus        81 d~~KLqdlLdgFIkKFVlC~~C~NPETel~it-k~q~i~~~CkACG~r~~~d~rhKLs~fIlKNPP~~~~~s~~-kk~~~  158 (400)
T KOG2767|consen   81 EASKLQDLLDGFIKKFVLCPSCENPETELIIT-KKQTISLKCKACGFRSDMDLRHKLSTFILKNPPEQKDSSKD-KKKAE  158 (400)
T ss_pred             cHHHHHHHHHHHHHHheeCcCCCCCceeEEec-ccchhhhHHHHcCCcccccchhhhcceeecCCcccccchhh-hHHHH
Confidence            99999999999999999999999999999995 58999999999999999999999999999999987764322 11111


Q ss_pred             CCc-ccchhhhccCCCCCC-CCCCC----CCCCCCCcccccccCCCCCCCcccchHHHHHHHHhccccccccccccchhh
Q psy15553        162 KRP-KRISKKQESNGDMTK-SDEES----DPTVVAPEKVADEVNDDDGGWLADVSEEAVRARALDLSSGVKGLTISEDLE  235 (489)
Q Consensus       162 ~~~-~~~~k~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~d~~W~~DtSeeA~~~R~~~L~~~~~~l~~~~d~e  235 (489)
                      ++. +++. +++..+.+++ ++..+    ..++++.....+..++||++|++|||+||+|+||++|+++++.|++..|++
T Consensus       159 ~k~R~~K~-k~k~~g~~s~~~~~~~~~~~~~~i~~~a~~~t~e~~DDddW~~Dtseea~r~R~~~Ls~~~~~~~~~sd~e  237 (400)
T KOG2767|consen  159 KKERKGKS-KDKKDGSKSSKNETSPDDSLSREIDPAAPLETAEEDDDDDWAVDTSEEAIRARMQELSANAKEMLLLSDLE  237 (400)
T ss_pred             HHHhhhhc-ccccccccCCccCCCcccccccccccccCcccccccccccccccchHHHHHHHHHHHhhhhhhhhhhhhhh
Confidence            111 1111 2333333333 11111    122232221223445666679999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhCCC--ChHHHHHHHHhcCcCcchhHHHHHhhcCCCCcchHHHhhhhcccccCcccccccc
Q psy15553        236 KTEKERMDIFYTCVKTALEKNNV--DAKELLSEAERLEVKTKAPLILAELLFADEDKIPIQAKKHRILFFGSNQFTWRSV  313 (489)
Q Consensus       236 ~~~~~~~~~~~~~v~~~~~~~~~--~~~ei~~ea~~l~v~~k~~~vl~e~lF~~~~~i~~qi~k~~~ll~~~~~~~~~s~  313 (489)
                      ++++++.+++++++...++++.+  +++||+.+|++|++.+++|+||+++||++.  |+++|.+|++||           
T Consensus       238 ~~E~~~~~~~~d~~~~~~~en~~~~~~kEi~~~a~~l~i~~k~p~vl~~~Lf~e~--ivkei~k~~~~l-----------  304 (400)
T KOG2767|consen  238 KSEEEREDILYDFVKKKKEENVPDKSDKEIVKEAERLDIKNKAPLVLAEVLFDEK--IVKEILKHRALL-----------  304 (400)
T ss_pred             hhHHHHHHHHHHhhhhcccccCCCccHHHHHHHHHHHhhcccchHHHHHHHhhhH--HHHHHHHHHHHH-----------
Confidence            99999999999999999887765  469999999999999999999999999999  999999999999           


Q ss_pred             hhhHHHHHHHHHHHhHHHHHHhhhhhhhhcccccchHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHhhccCcchHHHH
Q psy15553        314 GFYRRQINTIATLINQCQLILLDKQSTVLRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLL  393 (489)
Q Consensus       314 ~~~rali~~i~~~~aq~~~~l~~~~~~L~~fv~~~~~~Q~~lL~alE~~~~~~~~~l~~~~~~ILk~LYD~DILeEE~Il  393 (489)
                                                  ++|+++++++|++||++||+||..++..+++.+++||+.|||+|||+|++|+
T Consensus       305 ----------------------------~k~~~~~~k~qr~LLggiE~~~~~~~~el~~kva~ilk~lYd~DI~~e~vi~  356 (400)
T KOG2767|consen  305 ----------------------------LKFCTNNEKAQRYLLGGIERFVEKHEAELISKVAGILKELYDEDILEEEVII  356 (400)
T ss_pred             ----------------------------HHHHhccHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence                                        9999988999999999999999998999999999999999999999999999


Q ss_pred             HHHhhccccccchHHHHHHHHHHHHHHHHHccccccCCCC
Q psy15553        394 EWAEKTSKKYVSKELSAEIRSRAEPFIKWLREAEEEDSDS  433 (489)
Q Consensus       394 ~W~ek~skk~v~ke~~kkvrk~a~pFIeWLkEAEEEsded  433 (489)
                      .|++++|++||+++.+++|++.++|||+||++||+|++++
T Consensus       357 ~w~~K~skk~vsk~~sk~i~e~a~Pfi~WL~~AESe~eeE  396 (400)
T KOG2767|consen  357 KWGEKPSKKYVSKEKSKKIRENAKPFIEWLKNAESEDEEE  396 (400)
T ss_pred             HHHhcccccccchhhhhhhHhhhhHHHHHHHhcccccccc
Confidence            9999999999999999999999999999999996655543

>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology [] Back     alignment and domain information
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5 Back     alignment and domain information
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative Back     alignment and domain information
>PRK03988 translation initiation factor IF-2 subunit beta; Validated Back     alignment and domain information
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional Back     alignment and domain information
>KOG2768|consensus Back     alignment and domain information
>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included [] Back     alignment and domain information
>smart00515 eIF5C Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5 Back     alignment and domain information
>KOG2297|consensus Back     alignment and domain information
>KOG1461|consensus Back     alignment and domain information
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF12677 DUF3797: Domain of unknown function (DUF3797); InterPro: IPR024256 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PRK00464 nrdR transcriptional regulator NrdR; Validated Back     alignment and domain information
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation [] Back     alignment and domain information
>TIGR02443 conserved hypothetical metal-binding protein Back     alignment and domain information
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF14205 Cys_rich_KTR: Cysteine-rich KTR Back     alignment and domain information
>smart00440 ZnF_C2C2 C2C2 Zinc finger Back     alignment and domain information
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar Back     alignment and domain information
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family Back     alignment and domain information
>TIGR00244 transcriptional regulator NrdR Back     alignment and domain information
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C Back     alignment and domain information
>PRK09710 lar restriction alleviation and modification protein; Reviewed Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
2g2k_A170 Nmr Structure Of An N-Terminal Fragment Of The Euka 7e-66
2e9h_A157 Solution Structure Of The Eif-5_eif-2b Domain From 8e-66
2iu1_A208 Crystal Structure Of Eif5 C-Terminal Domain Length 5e-35
2ful_A177 Crystal Structure Of The C-Terminal Domain Of S. Ce 4e-10
1nee_A138 Structure Of Archaeal Translation Factor Aif2beta F 6e-09
2d74_B148 Crystal Structure Of Translation Initiation Factor 6e-08
>pdb|2G2K|A Chain A, Nmr Structure Of An N-Terminal Fragment Of The Eukaryotic Initiation Factor 5 (Eif5) Length = 170 Back     alignment and structure 
Iteration: 1

 Score =  248 bits (632), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 114/145 (78%), Positives = 127/145 (87%)
Query: 3   TVNVNRNVTDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCEL 62
           +VNVNR+V D FYRYKMP+LIAKVEGKGNGIKTVIVNM DVAKA+ RPPTYPTKYFGCEL
Sbjct: 2   SVNVNRSVMDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCEL 61
Query: 63  GAQTKLDHKNDRFIVNGSHDVVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQQV 122
           GAQT+ D KNDR+IVNGSH+  KLQD+LDGFI+KFVLCPEC+NPETDL V+ KK TI   
Sbjct: 62  GAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNS 121
Query: 123 CKACGFHGMLQFNHKLNTFILKNPP 147
           CKACG+ GML  +HKL TFILKNPP
Sbjct: 122 CKACGYRGMLDTHHKLCTFILKNPP 146
>pdb|2E9H|A Chain A, Solution Structure Of The Eif-5_eif-2b Domain From Human Eukaryotic Translation Initiation Factor 5 Length = 157 Back     alignment and structure
>pdb|2IU1|A Chain A, Crystal Structure Of Eif5 C-Terminal Domain Length = 208 Back     alignment and structure
>pdb|2FUL|A Chain A, Crystal Structure Of The C-Terminal Domain Of S. Cerevisiae Eif5 Length = 177 Back     alignment and structure
>pdb|1NEE|A Chain A, Structure Of Archaeal Translation Factor Aif2beta From Methanobacterium Thermoautrophicum Length = 138 Back     alignment and structure
>pdb|2D74|B Chain B, Crystal Structure Of Translation Initiation Factor Aif2betagamma Heterodimer Length = 148 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
2g2k_A170 EIF-5, eukaryotic translation initiation factor 5; 1e-64
2e9h_A157 EIF-5, eukaryotic translation initiation factor 5; 2e-64
2iu1_A208 EIF5, eukaryotic translation initiation factor 5; 4e-44
2d74_B148 Translation initiation factor 2 beta subunit; prot 7e-43
1nee_A138 EIF-2-beta, probable translation initiation factor 2e-41
2ful_A177 EIF-5, eukaryotic translation initiation factor 5; 2e-38
3cw2_K139 Translation initiation factor 2 subunit beta; AIF2 2e-38
1paq_A189 Translation initiation factor EIF-2B epsilon subun 3e-20
3jui_A182 Translation initiation factor EIF-2B subunit EPSI; 7e-20
3d3m_A168 Eukaryotic translation initiation factor 4 gamma 2 3e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 2e-10
3k1f_M197 Transcription initiation factor IIB; RNA polymeras 1e-07
1k8b_A52 EIF-2-beta, probable translation initiation factor 2e-04
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens} Length = 170 Back     alignment and structure
 Score =  205 bits (523), Expect = 1e-64
 Identities = 119/168 (70%), Positives = 135/168 (80%)

Query: 3   TVNVNRNVTDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCEL 62
           +VNVNR+V D FYRYKMP+LIAKVEGKGNGIKTVIVNM DVAKA+ RPPTYPTKYFGCEL
Sbjct: 2   SVNVNRSVMDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCEL 61

Query: 63  GAQTKLDHKNDRFIVNGSHDVVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQQV 122
           GAQT+ D KNDR+IVNGSH+  KLQD+LDGFI+KFVLCPEC+NPETDL V+ KK TI   
Sbjct: 62  GAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNS 121

Query: 123 CKACGFHGMLQFNHKLNTFILKNPPNLNPAVQGSSLTEGKRPKRISKK 170
           CKACG+ GML  +HKL TFILKNPP  + +  G    E K  K   K+
Sbjct: 122 CKACGYRGMLDTHHKLCTFILKNPPENSDSGTGKKEKEKKNRKGKDKE 169
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 157 Back     alignment and structure
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens} Length = 208 Back     alignment and structure
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B* Length = 148 Back     alignment and structure
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1 Length = 138 Back     alignment and structure
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae} Length = 177 Back     alignment and structure
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C* Length = 139 Back     alignment and structure
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14 Length = 189 Back     alignment and structure
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} Length = 182 Back     alignment and structure
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} Length = 168 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Back     alignment and structure
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1 Length = 52 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query489
2g2k_A170 EIF-5, eukaryotic translation initiation factor 5; 100.0
2e9h_A157 EIF-5, eukaryotic translation initiation factor 5; 100.0
2d74_B148 Translation initiation factor 2 beta subunit; prot 100.0
1nee_A138 EIF-2-beta, probable translation initiation factor 100.0
2iu1_A208 EIF5, eukaryotic translation initiation factor 5; 100.0
3cw2_K139 Translation initiation factor 2 subunit beta; AIF2 100.0
2ful_A177 EIF-5, eukaryotic translation initiation factor 5; 100.0
1paq_A189 Translation initiation factor EIF-2B epsilon subun 99.89
3jui_A182 Translation initiation factor EIF-2B subunit EPSI; 99.88
3d3m_A168 Eukaryotic translation initiation factor 4 gamma 2 99.81
1k8b_A52 EIF-2-beta, probable translation initiation factor 99.79
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 99.72
1k81_A36 EIF-2-beta, probable translation initiation factor 99.31
1ug3_A339 EIF4GI, eukaryotic protein synthesis initiation fa 98.92
2ogh_A108 Eukaryotic translation initiation factor EIF-1; al 87.76
1qyp_A57 RNA polymerase II; transcription, RPB9, Zn ribbon, 84.2
1pft_A50 TFIIB, PFTFIIBN; N-terminal domain, transcription 84.12
1tfi_A50 Transcriptional elongation factor SII; transcripti 82.95
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.3e-64  Score=470.62  Aligned_cols=150  Identities=76%  Similarity=1.256  Sum_probs=145.4

Q ss_pred             ceeccCCCCCCccccccCCCcEEEEeccCCCeeEEEechHHHHHHhCCCCChhhhHHHHhhcCceeeecCCCeEEEEecc
Q psy15553          2 ATVNVNRNVTDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVNGSH   81 (489)
Q Consensus         2 ~~iNi~~~~~D~~yRykmP~~~~kieGkgngiKTvi~N~~dIakaL~R~p~~~~kyf~~ELGa~~~~d~~~~r~iinG~~   81 (489)
                      |+|||+|+++||||||+||+|++++||+||||||+|+||.+||++|+|||+||+|||++||||+|+||++++||||||+|
T Consensus         1 ~~~Ni~~~~~D~~~RykmP~~~v~~EG~gnG~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~~~~rliinG~~   80 (170)
T 2g2k_A            1 LSVNVNRSVMDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSH   80 (170)
T ss_dssp             CCSCCCSSCCSCCSSCCCCCCCCEEESCTTTCEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECTTTCCEEEEBCC
T ss_pred             CcccccCCCCCccccccCCCCeEEEeccCCccEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecCCCCEEEEEeee
Confidence            25999999999999999999999999999999999999999999999999999999999999999999779999999999


Q ss_pred             chHHHHHHHHHHHhhcccCCCCCCCCceEEEeccCCeEeeecccccCcccccchhhhhhhhhcCCCCCCC
Q psy15553         82 DVVKLQDLLDGFIRKFVLCPECDNPETDLVVSAKKGTIQQVCKACGFHGMLQFNHKLNTFILKNPPNLNP  151 (489)
Q Consensus        82 ~~~~lq~~L~~fI~~yVlC~~C~~PeT~l~~~~k~~~~~l~C~ACG~~~~v~~~~kl~~~i~kn~p~~~~  151 (489)
                      ++.+||++|++||++||+|++|+||||.|++++++++++++|.|||++++|+++|||+|||+||||+..+
T Consensus        81 ~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~V~~~~kl~t~i~knpp~~~~  150 (170)
T 2g2k_A           81 EANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPPENSD  150 (170)
T ss_dssp             CHHHHHHHHHHHHHHHHSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCSCSSSSHHHHHHTSCCCCCS
T ss_pred             CHHHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccccCCccccccccceeeeeeecCCCCCc
Confidence            9999999999999999999999999999999767999999999999999999999999999999997654
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B* Back     alignment and structure
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1 Back     alignment and structure
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens} Back     alignment and structure
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C* Back     alignment and structure
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14 Back     alignment and structure
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0 Back     alignment and structure
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} Back     alignment and structure
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Back     alignment and structure
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Back     alignment and structure
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1 Back     alignment and structure
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1 Back     alignment and structure
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 489
d1neea198 d.241.1.1 (A:1-98) Translation initiation factor 2 1e-22
d1k8ba_52 d.241.1.1 (A:) Translation initiation factor 2 bet 4e-15
d1paqa_161 a.118.1.14 (A:) Translation initiation factor eIF- 5e-13
d1ug3a2127 a.118.1.14 (A:1438-1564) Eukaryotic initiation fac 1e-06
d1neea237 g.59.1.1 (A:99-135) Zinc-binding domain of transla 6e-04
d1k81a_36 g.59.1.1 (A:) Zinc-binding domain of translation i 0.001
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 98 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 89.8 bits (223), Expect = 1e-22
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 11 TDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDH 70
               R+++PK  + ++G     +T I N  +VA A+ R P +  K+   ELG    L+ 
Sbjct: 19 VFETKRFEVPKAYSVIQGN----RTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE- 73

Query: 71 KNDRFIVNGSHDVVKLQDLLDGFIRK 96
             R I+ G      + + ++ ++ K
Sbjct: 74 -GGRAILQGKFTHFLINERIEDYVNK 98
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 52 Back     information, alignment and structure
>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 161 Back     information, alignment and structure
>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 37 Back     information, alignment and structure
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 36 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query489
d1neea198 Translation initiation factor 2 beta, aIF2beta, N- 99.92
d1k8ba_52 Translation initiation factor 2 beta, aIF2beta, N- 99.78
d1paqa_161 Translation initiation factor eIF-2b epsilon {Bake 99.72
d1neea237 Zinc-binding domain of translation initiation fact 99.35
d1ug3a2127 Eukaryotic initiation factor eIF4G {Human (Homo sa 99.26
d1k81a_36 Zinc-binding domain of translation initiation fact 99.26
d1pfta_50 Transcription initiation factor TFIIB, N-terminal 84.66
d1qypa_57 RBP9 subunit of RNA polymerase II {Archaeon Thermo 83.79
d1twfi272 RBP9 subunit of RNA polymerase II {Baker's yeast ( 81.63
d1dl6a_58 Transcription initiation factor TFIIB, N-terminal 80.42
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.92  E-value=3.5e-26  Score=193.94  Aligned_cols=85  Identities=26%  Similarity=0.473  Sum_probs=77.5

Q ss_pred             ccCCCCCCccccccCCCcEEEEeccCCCeeEEEechHHHHHHhCCCCChhhhHHHHhhcCceeeecCCCeEEEEeccchH
Q psy15553          5 NVNRNVTDAFYRYKMPKLIAKVEGKGNGIKTVIVNMADVAKAIGRPPTYPTKYFGCELGAQTKLDHKNDRFIVNGSHDVV   84 (489)
Q Consensus         5 Ni~~~~~D~~yRykmP~~~~kieGkgngiKTvi~N~~dIakaL~R~p~~~~kyf~~ELGa~~~~d~~~~r~iinG~~~~~   84 (489)
                      .++..+ ....||+||+|+++++|+    ||+|+||.+||++|+|+|+|++|||++||||+|+++  +||+||+|+|++.
T Consensus        14 ~l~~~~-~~~~R~~mP~~~v~~eGk----kTii~Nf~~Ia~~L~R~p~hl~kfl~~ELgt~g~i~--~~~lii~G~~~~~   86 (98)
T d1neea1          14 QLPPEV-FETKRFEVPKAYSVIQGN----RTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE--GGRAILQGKFTHF   86 (98)
T ss_dssp             SSCTTS-CCCCCCCCSCCCCCEETT----EEEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB--TTTEEEESSCSSS
T ss_pred             HCCccc-CCCcceecCCceEEEecc----eEEEechHHHHHHHCCCHHHHHHHHHHHhCCceEEe--CCEEEEEeeeCHH
Confidence            344443 345699999999999998    999999999999999999999999999999999997  7899999999999


Q ss_pred             HHHHHHHHHHhh
Q psy15553         85 KLQDLLDGFIRK   96 (489)
Q Consensus        85 ~lq~~L~~fI~~   96 (489)
                      .|+++|++||++
T Consensus        87 ~i~~~l~~yI~e   98 (98)
T d1neea1          87 LINERIEDYVNK   98 (98)
T ss_dssp             HHHHHHHHHHTH
T ss_pred             HHHHHHHHHhcC
Confidence            999999999985
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure