Psyllid ID: psy15594

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVTKTVAARNAGPNSPNNANSTLNRPMASQGGTRYEDRTIQRPNQNMEASRSLIQNYTNYFTSTLRRLA
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHccccHHcccccccccEccccccccccccc
Coil and Loop (DISEMBL)
mrdlvqklpsgnaqhdqgtsDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVTKTVAarnagpnspnnanstlnrpmasqggtryedrtiqrpnqnmEASRSLIQNYTNYFTSTLRRLA
Flexible Loop (DISEMBL)
mrdlvqklpsgnaqhdqgtsDDTIAAVLATLNEVIKknaefsrnassageyARKKLRECEGLIDSLLYVVKSAIEKSllesggverlmnitkqrqkytpRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVTKTVaarnagpnspnnanstlnrpMASQGGTRYEDRTIQRPNQnmeasrsliqnytnyftstlrrla
Low Complexity Region (SEG)
MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVTKTVaarnagpnspnnansTLNRPMASQGGTRYEDRTIQRPNQNMEASRSLIQNYTNYFTSTLRRLA
Disordered region (IsUnstruct)
***********************IAAVLATLNEVIKK*************YARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVTKTV************************************************QNYTNYF********
Disordered Region (DISOPRED)
MRDLVQK*****************AAVLATLNEVIKKNAEFSRNAS**********RECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITKQ********LKFAGQVLFTMWQHQELREVYKKHGWKEQDFV*******************************************************************
Disordered Region (DISEMBL)
*******************SDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVTKTVAARNAGPNSPNNANSTLNRPMASQGGTRYEDRTIQRPNQNMEASRSLIQNYTNYFTSTLRRLA
Disordered Region (DISPRO)
****************QGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVTK*****************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVTKTVAARNAGPNSPNNANSTLNRPMASQGGTRYEDRTIQRPNQNMEASRSLIQNYTNYFTSTLRRLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q9UQB3	1225	Catenin delta-2 OS=Homo s	yes	N/A	0.515	0.084	0.378	8e-19
Q68FH0	1190	Plakophilin-4 OS=Mus musc	yes	N/A	0.495	0.083	0.385	5e-17
Q99569	1192	Plakophilin-4 OS=Homo sap	no	N/A	0.495	0.083	0.385	6e-17
O35927	1247	Catenin delta-2 OS=Mus mu	no	N/A	0.515	0.082	0.378	7e-17
Q9U308	1254	Juxtamembrane domain-asso	no	N/A	0.615	0.098	0.309	5e-15
P30999	938	Catenin delta-1 OS=Mus mu	no	N/A	0.75	0.159	0.306	2e-09
O60716	968	Catenin delta-1 OS=Homo s	no	N/A	0.48	0.099	0.315	1e-08
O35116	264	Catenin delta-2 (Fragment	no	N/A	0.305	0.231	0.442	4e-08
P98203	962	Armadillo repeat protein	no	N/A	0.115	0.023	0.406	5e-06
Q8AXM9	859	Catenin delta-1 OS=Xenopu	N/A	N/A	0.42	0.097	0.322	5e-06

>sp|Q9UQB3|CTND2_HUMAN Catenin delta-2 OS=Homo sapiens GN=CTNND2 PE=1 SV=3

 Score = 93.6 bits (231), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 37/140 (26%)

Query: 1    MRDLVQKLPSGNAQHDQGT---SDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLR 57
            MRDLV +LP GN  ++  +   SDDT+ AV  TL+EVI KN E   NA            
Sbjct: 934  MRDLVHRLPGGNNSNNTASKAMSDDTVTAVCCTLHEVITKNME---NA------------ 978

Query: 58   ECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITKQR-QKYTPRVLKFAGQVLFTMWQHQ 116
                              K+L ++GG+E+L+ I+K +  K++P+V+K A QVL +MWQ++
Sbjct: 979  ------------------KALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYR 1020

Query: 117  ELREVYKKHGWKEQDFVTKT 136
            +LR +YKK GW +  FV  +
Sbjct: 1021 DLRSLYKKDGWSQYHFVASS 1040

Functions as a transcriptional activator when bound to ZBTB33 (By similarity). May be involved in neuronal cell adhesion and tissue morphogenesis and integrity by regulating adhesion molecules.
Homo sapiens (taxid: 9606)

>sp|Q68FH0|PKP4_MOUSE Plakophilin-4 OS=Mus musculus GN=Pkp4 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 36/135 (26%)

Query: 1    MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
            MRDLV +LP GN       SD+T+AA+   L+EV  KN E   NA               
Sbjct: 913  MRDLVNRLPGGNGPSI--LSDETVAAICCALHEVTSKNME---NA--------------- 952

Query: 61   GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQR-QKYTPRVLKFAGQVLFTMWQHQELR 119
                           K+L +SGG+E+L+NITK R  + + +V+K A QVL T+WQ+++LR
Sbjct: 953  ---------------KALADSGGIEKLVNITKGRGDRSSLKVVKAAAQVLNTLWQYRDLR 997

Query: 120  EVYKKHGWKEQDFVT 134
             +YKK GW +  F+T
Sbjct: 998  SIYKKDGWNQNHFIT 1012

Plays a role as a regulator of Rho activity during cytokinesis. May play a role in junctional plaques.

Mus musculus (taxid: 10090)

>sp|Q99569|PKP4_HUMAN Plakophilin-4 OS=Homo sapiens GN=PKP4 PE=1 SV=2

 Score = 87.4 bits (215), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 36/135 (26%)

Query: 1    MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
            MRDLV +LP GN       SD+T+AA+   L+EV  KN E   NA               
Sbjct: 914  MRDLVNRLPGGNG--PSVLSDETMAAICCALHEVTSKNME---NA--------------- 953

Query: 61   GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQR-QKYTPRVLKFAGQVLFTMWQHQELR 119
                           K+L +SGG+E+L+NITK R  + + +V+K A QVL T+WQ+++LR
Sbjct: 954  ---------------KALADSGGIEKLVNITKGRGDRSSLKVVKAAAQVLNTLWQYRDLR 998

Query: 120  EVYKKHGWKEQDFVT 134
             +YKK GW +  F+T
Sbjct: 999  SIYKKDGWNQNHFIT 1013

Plays a role as a regulator of Rho activity during cytokinesis. May play a role in junctional plaques.

Homo sapiens (taxid: 9606)

>sp|O35927|CTND2_MOUSE Catenin delta-2 OS=Mus musculus GN=Ctnnd2 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 37/140 (26%)

Query: 1    MRDLVQKLPSGNAQHD---QGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLR 57
            MRDLV +LP GN  ++   +  SDDT+ AV  TL+EVI KN E   NA            
Sbjct: 956  MRDLVHRLPGGNNSNNSGSKAMSDDTVTAVCCTLHEVITKNME---NA------------ 1000

Query: 58   ECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITKQR-QKYTPRVLKFAGQVLFTMWQHQ 116
                              K+L ++GG+E+L+ I+K +  K++P+V+K A QVL +MWQ++
Sbjct: 1001 ------------------KALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYR 1042

Query: 117  ELREVYKKHGWKEQDFVTKT 136
            +LR +YKK GW +  FV  +
Sbjct: 1043 DLRSLYKKDGWSQYHFVASS 1062

May be involved in neuronal cell adhesion and tissue morphogenesis and integrity by regulating adhesion molecules. Functions as a transcriptional activator when bound to ZBTB33.

Mus musculus (taxid: 10090)

>sp|Q9U308|JAC1_CAEEL Juxtamembrane domain-associated catenin OS=Caenorhabditis elegans GN=jac-1 PE=1 SV=2

 Score = 80.9 bits (198), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 42/165 (25%)

Query: 1    MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
            +RD + KLP   +      SD TI AVL  L E+++ +A ++                  
Sbjct: 1058 LRDFLDKLPEPGSPRRSAISDQTIGAVLGILFEIVRSSAAYT------------------ 1099

Query: 61   GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELRE 120
                           K + E  G ++L  +++    Y+ RV K+A QVL+ MWQH+EL +
Sbjct: 1100 ---------------KDVHELKGTDKLRALSRSYPTYSHRVCKYASQVLYVMWQHKELHD 1144

Query: 121  VYKKHGWKEQDFVTKTVAARNAGPNSPNNANSTLNRPMASQGGTR 165
             +K+ G KE DF + T  AR          +STL RP++SQG  R
Sbjct: 1145 GFKRSGLKEADFYSGT--ARRGD-------SSTLARPISSQGRER 1180

May act as a positive modulator of hmr-1 function during epidermal morphogenesis.

Caenorhabditis elegans (taxid: 6239)

>sp|P30999|CTND1_MOUSE Catenin delta-1 OS=Mus musculus GN=Ctnnd1 PE=1 SV=2

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 39/189 (20%)

Query: 3   DLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECEGL 62
           +LV+ LP G        S+DT+ ++L T+NEVI +N E           A KKLRE +  
Sbjct: 754 NLVKNLPGGQQNSSWNFSEDTVVSILNTINEVIAENLE-----------AAKKLRETQ-- 800

Query: 63  IDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVY 122
                               G+E+L+ I K   + + + ++ A  VL T+W ++ELR+  
Sbjct: 801 --------------------GIEKLVLINKSGNR-SEKEVRAAALVLQTIWGYKELRKPL 839

Query: 123 KKHGWKEQDF-VTKTVAARNAGPNSPNNANSTLNRPMASQGGTRYEDRTIQRPNQNMEA- 180
           +K GWK+ DF V    A+R+   +S +  +STL     +Q   +  DR  + P  NM + 
Sbjct: 840 EKEGWKKSDFQVNLNNASRSQSSHSYD--DSTLPLIDRNQKSDKKPDRE-EIPMSNMGSN 896

Query: 181 SRSLIQNYT 189
           ++SL  NY+
Sbjct: 897 TKSLDNNYS 905

May associate with and regulate the cell adhesion properties of both C- and E-cadherins. Implicated both in cell transformation by SRC and in ligand-induced receptor signaling through the EGF, PDGF, CSF-1 and ERBB2 receptors (By similarity). Binds to and inhibits the transcriptional repressor ZBTB33, which may lead to activation of target genes of the Wnt signaling pathway. Promotes GLIS2 C-terminal cleavage.

Mus musculus (taxid: 10090)

>sp|O60716|CTND1_HUMAN Catenin delta-1 OS=Homo sapiens GN=CTNND1 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 34/130 (26%)

Query: 3   DLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECEGL 62
           +LV+ LP G        S+DT+ ++L T+NEVI +N E           A KKLRE +  
Sbjct: 754 NLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE-----------AAKKLRETQ-- 800

Query: 63  IDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVY 122
                               G+E+L+ I K   + + + ++ A  VL T+W ++ELR+  
Sbjct: 801 --------------------GIEKLVLINKSGNR-SEKEVRAAALVLQTIWGYKELRKPL 839

Query: 123 KKHGWKEQDF 132
           +K GWK+ DF
Sbjct: 840 EKEGWKKSDF 849

Binds to and inhibits the transcriptional repressor ZBTB33, which may lead to activation of target genes of the Wnt signaling pathway (By similarity). May associate with and regulate the cell adhesion properties of both C- and E-cadherins. Implicated both in cell transformation by SRC and in ligand-induced receptor signaling through the EGF, PDGF, CSF-1 and ERBB2 receptors. Promotes GLIS2 C-terminal cleavage.

Homo sapiens (taxid: 9606)

>sp|O35116|CTND2_RAT Catenin delta-2 (Fragment) OS=Rattus norvegicus GN=Ctnnd2 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 43/61 (70%)

Query: 32  NEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNIT 91
           ++V++      RN SSAGE AR+++REC+GL D+LLYV++SA+  S ++S  VE  + I 
Sbjct: 147 SQVLRNATGCLRNVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCIL 206

Query: 92  K 92
           +
Sbjct: 207 R 207

May be involved in neuronal cell adhesion and tissue morphogenesis and integrity by regulating adhesion molecules. Functions as a transcriptional activator when bound to ZBTB33.

Rattus norvegicus (taxid: 10116)

>sp|P98203|ARVC_MOUSE Armadillo repeat protein deleted in velo-cardio-facial syndrome homolog OS=Mus musculus GN=Arvcf PE=1 SV=2

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%)

Query: 34  VIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITK 92
           V K  +   RN SS G  AR++LRECEGL+D+LL+ ++SA+ +   ++  VE  + I +
Sbjct: 520 VFKNTSGCLRNVSSDGAEARRRLRECEGLVDALLHALQSAVGRKDTDNKSVENCVCIMR 578

Involved in protein-protein interactions at adherens junctions.

Mus musculus (taxid: 10090)

>sp|Q8AXM9|CTND1_XENLA Catenin delta-1 OS=Xenopus laevis GN=ctnnd1 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 34/118 (28%)

Query: 21  DDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLE 80
           +DT   V+ T++EVI  N E           A K+LR                      E
Sbjct: 692 EDTNVCVINTIHEVISGNLE-----------AAKRLR----------------------E 718

Query: 81  SGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVTKTVA 138
           S G+ERL+ I K   + + R ++ AG  L T+W ++ELR   +K GWK+ DF   T A
Sbjct: 719 SQGIERLVLINKGGGR-SEREIRAAGFCLQTIWGYKELRRPLEKDGWKKSDFQVSTAA 775

May associate with and regulate the cell adhesion properties of C- and possibly E-cadherins. Also binds to and inhibits the transcriptional repressor zbtb33, leading to activation of target genes of the Wnt signaling pathway. Required for gastrulation, axial elongation and development of the craniofacial skeleton and eye.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
332030397	398	Catenin delta-2 [Acromyrmex echinatior]	0.72	0.361	0.751	2e-70
383860564	890	PREDICTED: catenin delta-2-like [Megachi	0.72	0.161	0.751	5e-70
380016012	915	PREDICTED: catenin delta-2-like [Apis fl	0.72	0.157	0.751	5e-70
328786946	895	PREDICTED: catenin delta-2-like [Apis me	0.72	0.160	0.751	6e-70
307178288	904	Catenin delta-2 [Camponotus floridanus]	0.72	0.159	0.751	6e-70
350426164	894	PREDICTED: catenin delta-2-like [Bombus	0.72	0.161	0.751	6e-70
340721767	896	PREDICTED: catenin delta-2-like [Bombus	0.72	0.160	0.751	6e-70
345491297	894	PREDICTED: catenin delta-2 isoform 1 [Na	0.7	0.156	0.763	2e-69
322797317	913	hypothetical protein SINV_07811 [Solenop	0.72	0.157	0.740	9e-69
189241994	626	PREDICTED: similar to plakophilin-4 [Tri	0.7	0.223	0.751	2e-68

>gi|332030397|gb|EGI70104.1| Catenin delta-2 [Acromyrmex echinatior]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 133/177 (75%), Positives = 140/177 (79%), Gaps = 33/177 (18%)

Query: 1   MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
           MRDL+QKLPSGN QHDQGTSDDTIAAVLATLNEVIKKNAEFSR                 
Sbjct: 97  MRDLIQKLPSGNNQHDQGTSDDTIAAVLATLNEVIKKNAEFSR----------------- 139

Query: 61  GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELRE 120
                           SLL++GGV+RLMNIT+QRQKYTPRVLKFAGQVLFTMWQHQELR+
Sbjct: 140 ----------------SLLDAGGVDRLMNITRQRQKYTPRVLKFAGQVLFTMWQHQELRD 183

Query: 121 VYKKHGWKEQDFVTKTVAARNAGPNSPNNANSTLNRPMASQGGTRYEDRTIQRPNQN 177
           VYKKHGWKEQDFVTKTVAARN+GPNSPNNANSTLNRPMASQG TRYEDRTIQR N N
Sbjct: 184 VYKKHGWKEQDFVTKTVAARNSGPNSPNNANSTLNRPMASQGSTRYEDRTIQRANMN 240

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860564|ref|XP_003705759.1| PREDICTED: catenin delta-2-like [Megachile rotundata]

 Score =  269 bits (688), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 133/177 (75%), Positives = 140/177 (79%), Gaps = 33/177 (18%)

Query: 1   MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
           MRDL+QKLPSGN QHDQGTSDDTIAAVLATLNEVIKKNAEFSR                 
Sbjct: 656 MRDLIQKLPSGNNQHDQGTSDDTIAAVLATLNEVIKKNAEFSR----------------- 698

Query: 61  GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELRE 120
                           SLL++GGV+RLMNIT+QRQKYTPRVLKFAGQVLFTMWQHQELR+
Sbjct: 699 ----------------SLLDAGGVDRLMNITRQRQKYTPRVLKFAGQVLFTMWQHQELRD 742

Query: 121 VYKKHGWKEQDFVTKTVAARNAGPNSPNNANSTLNRPMASQGGTRYEDRTIQRPNQN 177
           VYKKHGWKEQDFVTKTVAARN+GPNSPNNANSTLNRPMASQG TRYEDRTIQR N N
Sbjct: 743 VYKKHGWKEQDFVTKTVAARNSGPNSPNNANSTLNRPMASQGSTRYEDRTIQRANMN 799

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016012|ref|XP_003691987.1| PREDICTED: catenin delta-2-like [Apis florea]

 Score =  269 bits (687), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 133/177 (75%), Positives = 140/177 (79%), Gaps = 33/177 (18%)

Query: 1   MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
           MRDL+QKLPSGN QHDQGTSDDTIAAVLATLNEVIKKNAEFSR                 
Sbjct: 677 MRDLIQKLPSGNNQHDQGTSDDTIAAVLATLNEVIKKNAEFSR----------------- 719

Query: 61  GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELRE 120
                           SLL++GGV+RLMNIT+QRQKYTPRVLKFAGQVLFTMWQHQELR+
Sbjct: 720 ----------------SLLDAGGVDRLMNITRQRQKYTPRVLKFAGQVLFTMWQHQELRD 763

Query: 121 VYKKHGWKEQDFVTKTVAARNAGPNSPNNANSTLNRPMASQGGTRYEDRTIQRPNQN 177
           VYKKHGWKEQDFVTKTVAARN+GPNSPNNANSTLNRPMASQG TRYEDRTIQR N N
Sbjct: 764 VYKKHGWKEQDFVTKTVAARNSGPNSPNNANSTLNRPMASQGSTRYEDRTIQRANMN 820

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328786946|ref|XP_391862.4| PREDICTED: catenin delta-2-like [Apis mellifera]

 Score =  269 bits (687), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 133/177 (75%), Positives = 140/177 (79%), Gaps = 33/177 (18%)

Query: 1   MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
           MRDL+QKLPSGN QHDQGTSDDTIAAVLATLNEVIKKNAEFSR                 
Sbjct: 657 MRDLIQKLPSGNNQHDQGTSDDTIAAVLATLNEVIKKNAEFSR----------------- 699

Query: 61  GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELRE 120
                           SLL++GGV+RLMNIT+QRQKYTPRVLKFAGQVLFTMWQHQELR+
Sbjct: 700 ----------------SLLDAGGVDRLMNITRQRQKYTPRVLKFAGQVLFTMWQHQELRD 743

Query: 121 VYKKHGWKEQDFVTKTVAARNAGPNSPNNANSTLNRPMASQGGTRYEDRTIQRPNQN 177
           VYKKHGWKEQDFVTKTVAARN+GPNSPNNANSTLNRPMASQG TRYEDRTIQR N N
Sbjct: 744 VYKKHGWKEQDFVTKTVAARNSGPNSPNNANSTLNRPMASQGSTRYEDRTIQRANMN 800

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178288|gb|EFN67060.1| Catenin delta-2 [Camponotus floridanus]

 Score =  268 bits (686), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 133/177 (75%), Positives = 140/177 (79%), Gaps = 33/177 (18%)

Query: 1   MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
           MRDL+QKLPSGN QHDQGTSDDTIAAVLATLNEVIKKNAEFSR                 
Sbjct: 655 MRDLIQKLPSGNNQHDQGTSDDTIAAVLATLNEVIKKNAEFSR----------------- 697

Query: 61  GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELRE 120
                           SLL++GGV+RLMNIT+QRQKYTPRVLKFAGQVLFTMWQHQELR+
Sbjct: 698 ----------------SLLDAGGVDRLMNITRQRQKYTPRVLKFAGQVLFTMWQHQELRD 741

Query: 121 VYKKHGWKEQDFVTKTVAARNAGPNSPNNANSTLNRPMASQGGTRYEDRTIQRPNQN 177
           VYKKHGWKEQDFVTKTVAARN+GPNSPNNANSTLNRPMASQG TRYEDRTIQR N N
Sbjct: 742 VYKKHGWKEQDFVTKTVAARNSGPNSPNNANSTLNRPMASQGSTRYEDRTIQRANMN 798

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350426164|ref|XP_003494353.1| PREDICTED: catenin delta-2-like [Bombus impatiens]

 Score =  268 bits (686), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 133/177 (75%), Positives = 140/177 (79%), Gaps = 33/177 (18%)

Query: 1   MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
           MRDL+QKLPSGN QHDQGTSDDTIAAVLATLNEVIKKNAEFSR                 
Sbjct: 656 MRDLIQKLPSGNNQHDQGTSDDTIAAVLATLNEVIKKNAEFSR----------------- 698

Query: 61  GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELRE 120
                           SLL++GGV+RLMNIT+QRQKYTPRVLKFAGQVLFTMWQHQELR+
Sbjct: 699 ----------------SLLDAGGVDRLMNITRQRQKYTPRVLKFAGQVLFTMWQHQELRD 742

Query: 121 VYKKHGWKEQDFVTKTVAARNAGPNSPNNANSTLNRPMASQGGTRYEDRTIQRPNQN 177
           VYKKHGWKEQDFVTKTVAARN+GPNSPNNANSTLNRPMASQG TRYEDRTIQR N N
Sbjct: 743 VYKKHGWKEQDFVTKTVAARNSGPNSPNNANSTLNRPMASQGSTRYEDRTIQRANMN 799

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721767|ref|XP_003399286.1| PREDICTED: catenin delta-2-like [Bombus terrestris]

 Score =  268 bits (686), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 133/177 (75%), Positives = 140/177 (79%), Gaps = 33/177 (18%)

Query: 1   MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
           MRDL+QKLPSGN QHDQGTSDDTIAAVLATLNEVIKKNAEFSR                 
Sbjct: 656 MRDLIQKLPSGNNQHDQGTSDDTIAAVLATLNEVIKKNAEFSR----------------- 698

Query: 61  GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELRE 120
                           SLL++GGV+RLMNIT+QRQKYTPRVLKFAGQVLFTMWQHQELR+
Sbjct: 699 ----------------SLLDAGGVDRLMNITRQRQKYTPRVLKFAGQVLFTMWQHQELRD 742

Query: 121 VYKKHGWKEQDFVTKTVAARNAGPNSPNNANSTLNRPMASQGGTRYEDRTIQRPNQN 177
           VYKKHGWKEQDFVTKTVAARN+GPNSPNNANSTLNRPMASQG TRYEDRTIQR N N
Sbjct: 743 VYKKHGWKEQDFVTKTVAARNSGPNSPNNANSTLNRPMASQGSTRYEDRTIQRANMN 799

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345491297|ref|XP_001603430.2| PREDICTED: catenin delta-2 isoform 1 [Nasonia vitripennis]

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 132/173 (76%), Positives = 138/173 (79%), Gaps = 33/173 (19%)

Query: 1   MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
           MRDL+QKLPSGN QHDQGTSDDTIAAVLATLNEVIKKNAEFSR                 
Sbjct: 659 MRDLIQKLPSGNNQHDQGTSDDTIAAVLATLNEVIKKNAEFSR----------------- 701

Query: 61  GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELRE 120
                           SLL++GGVERLMNIT+QRQKYTPRVLKFAGQVLFTMWQHQELR+
Sbjct: 702 ----------------SLLDAGGVERLMNITRQRQKYTPRVLKFAGQVLFTMWQHQELRD 745

Query: 121 VYKKHGWKEQDFVTKTVAARNAGPNSPNNANSTLNRPMASQGGTRYEDRTIQR 173
           VYKKHGWKEQDFVTKTVAARN+GPNSPNNANSTLNRPMASQG TRYEDRTIQR
Sbjct: 746 VYKKHGWKEQDFVTKTVAARNSGPNSPNNANSTLNRPMASQGSTRYEDRTIQR 798

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797317|gb|EFZ19435.1| hypothetical protein SINV_07811 [Solenopsis invicta]

 Score =  265 bits (676), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 134/181 (74%), Positives = 140/181 (77%), Gaps = 37/181 (20%)

Query: 1   MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
           MRDL+QKLPSGN QHDQGTSDDTIAAVLATLNEVIKKNAEFSR                 
Sbjct: 651 MRDLIQKLPSGNNQHDQGTSDDTIAAVLATLNEVIKKNAEFSR----------------- 693

Query: 61  GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELRE 120
                           SLL++GGVERLMNIT+QRQKYTPRVLKFAGQVLFTMWQHQELR+
Sbjct: 694 ----------------SLLDAGGVERLMNITRQRQKYTPRVLKFAGQVLFTMWQHQELRD 737

Query: 121 VYKKHGWKEQDFVTKTVAARNAGPNSPNNAN----STLNRPMASQGGTRYEDRTIQRPNQ 176
           VYKKHGWKEQDFVTKTVAARN+GPNSPNNAN    STLNRPMASQG TRYEDRTIQR N 
Sbjct: 738 VYKKHGWKEQDFVTKTVAARNSGPNSPNNANSYDCSTLNRPMASQGSTRYEDRTIQRANM 797

Query: 177 N 177
           N
Sbjct: 798 N 798

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241994|ref|XP_968711.2| PREDICTED: similar to plakophilin-4 [Tribolium castaneum]

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 130/173 (75%), Positives = 137/173 (79%), Gaps = 33/173 (19%)

Query: 1   MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
           MRDLVQKLPSGN QHDQGTSDDTIAAVLATLNEVIKKNAEFSR                 
Sbjct: 397 MRDLVQKLPSGNPQHDQGTSDDTIAAVLATLNEVIKKNAEFSR----------------- 439

Query: 61  GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELRE 120
                           SLLE+GGVERLM IT+QRQKYTPRVLKFAGQVLFTMWQHQ+LR+
Sbjct: 440 ----------------SLLEAGGVERLMTITRQRQKYTPRVLKFAGQVLFTMWQHQDLRD 483

Query: 121 VYKKHGWKEQDFVTKTVAARNAGPNSPNNANSTLNRPMASQGGTRYEDRTIQR 173
           VYKKHGWKEQDFVTKTVAARN+GPNSPNNANSTLNRPMASQ GTRYEDRT++R
Sbjct: 484 VYKKHGWKEQDFVTKTVAARNSGPNSPNNANSTLNRPMASQSGTRYEDRTMKR 536

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
FB|FBgn0260799	781	p120ctn "Adherens junction pro	0.65	0.166	0.522	2.5e-48
UNIPROTKB|F1RPT5	1192	PKP4 "Uncharacterized protein"	0.615	0.103	0.335	5.4e-22
UNIPROTKB|E1C625	1193	PKP4 "Uncharacterized protein"	0.575	0.096	0.333	5.4e-22
UNIPROTKB|F1MJ11	1193	PKP4 "Uncharacterized protein"	0.615	0.103	0.328	6.9e-22
MGI|MGI:109281	1190	Pkp4 "plakophilin 4" [Mus musc	0.615	0.103	0.328	8.7e-22
UNIPROTKB|H0VKQ9	1192	PKP4 "Uncharacterized protein"	0.615	0.103	0.328	8.7e-22
UNIPROTKB|G1P2V0	1166	PKP4 "Uncharacterized protein"	0.615	0.105	0.328	1.3e-21
UNIPROTKB|F7GD17	1192	PKP4 "Uncharacterized protein"	0.615	0.103	0.328	1.4e-21
UNIPROTKB|Q99569	1192	PKP4 "Plakophilin-4" [Homo sap	0.615	0.103	0.328	1.4e-21
UNIPROTKB|G1T5G1	1192	PKP4 "Uncharacterized protein"	0.615	0.103	0.328	1.4e-21

FB|FBgn0260799 p120ctn "Adherens junction protein p120" [Drosophila melanogaster (taxid:7227)]

 Score = 343 (125.8 bits), Expect = 2.5e-48, Sum P(2) = 2.5e-48
 Identities = 71/136 (52%), Positives = 93/136 (68%)

Query:    69 VVKSAIE--KSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHG 126
             V+K   E  +SLL+SGG++RLMNITK+++KYT  VLKFA QVL+TMWQH ELR+VYKK+G
Sbjct:   644 VIKKNPEFSRSLLDSGGIDRLMNITKRKEKYTSCVLKFASQVLYTMWQHNELRDVYKKNG 703

Query:   127 WKEQDFVTKTVXXXXXXXXXXXXXXXTLNRPMASQGGTRYEDRTIQRPNQNM----EASR 182
             WKEQDFV+K                 TLNRPMASQG TRYEDRTIQR    +    ++S 
Sbjct:   704 WKEQDFVSKHFTAHNTPPSSPNNVNNTLNRPMASQGRTRYEDRTIQRGTSTLYSANDSSG 763

Query:   183 SLIQNYTNYFTSTLRR 198
             +++ N +   +  +R+
Sbjct:   764 AVMSNESAMLSEMVRK 779

GO:0005912 "adherens junction" evidence=ISS;IDA;IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0007155 "cell adhesion" evidence=IGI

GO:0001745 "compound eye morphogenesis" evidence=IGI;IMP

GO:0034334 "adherens junction maintenance" evidence=IMP

UNIPROTKB|F1RPT5 PKP4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 172 (65.6 bits), Expect = 5.4e-22, Sum P(2) = 5.4e-22
 Identities = 44/131 (33%), Positives = 70/131 (53%)

Query:    76 KSLLESGGVERLMNITKQR-QKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVT 134
             K+L +SGG+E+L+NITK R  + + +V+K A QVL T+WQ+++LR +YKK GW +  F+T
Sbjct:   954 KALADSGGIEKLVNITKGRGDRSSLKVVKAAAQVLNTLWQYRDLRSIYKKDGWNQNHFIT 1013

Query:   135 KTVXXXXXXXXXXXXXXXTLNRPMA----SQGGTRYEDRT--IQRPNQNMEASRSLIQNY 188
               V               T N+ M+    S G T        I+ P    + ++  +Q Y
Sbjct:  1014 P-VSTLERDRFKSHPSLSTTNQQMSPVIQSVGSTSSSPALLGIRDPRSEYDRTQPPMQYY 1072

Query:   189 TNYFTSTLRRL 199
             ++   +T R L
Sbjct:  1073 SSQGDATHRGL 1083

GO:0010628 "positive regulation of gene expression" evidence=ISS

GO:0007043 "cell-cell junction assembly" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0030057 "desmosome" evidence=ISS

GO:0005911 "cell-cell junction" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005856 "cytoskeleton" evidence=ISS

GO:0072686 "mitotic spindle" evidence=ISS

GO:0051233 "spindle midzone" evidence=ISS

GO:0044291 "cell-cell contact zone" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0009898 "internal side of plasma membrane" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0000922 "spindle pole" evidence=ISS

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=ISS

GO:0032321 "positive regulation of Rho GTPase activity" evidence=ISS

UNIPROTKB|E1C625 PKP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 172 (65.6 bits), Expect = 5.4e-22, Sum P(2) = 5.4e-22
 Identities = 41/123 (33%), Positives = 66/123 (53%)

Query:    76 KSLLESGGVERLMNITKQRQ-KYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVT 134
             K+L ++GG+E+L+NITK R  + + +V+K A QVL T+WQ+++LR +YKK GW +  F+T
Sbjct:   954 KALADTGGIEKLVNITKGRATRSSLKVVKAAAQVLNTLWQYRDLRSIYKKDGWNQSHFIT 1013

Query:   135 KTVXXXXXXXXXXXXXXXTLNRPMA----SQGGTRYEDRT--IQRPNQNMEASRSLIQNY 188
               V               T N+ M+    S G T        I+ P    + ++  +Q Y
Sbjct:  1014 P-VSTLERERFKSHPSLSTANQQMSPVIQSVGSTSSSPALLGIREPRSEYDRTQPSMQYY 1072

Query:   189 TNY 191
              N+
Sbjct:  1073 NNH 1075

GO:0000922 "spindle pole" evidence=IEA

GO:0009898 "internal side of plasma membrane" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0032321 "positive regulation of Rho GTPase activity" evidence=IEA

GO:0051233 "spindle midzone" evidence=IEA

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=IEA

GO:0072686 "mitotic spindle" evidence=IEA

UNIPROTKB|F1MJ11 PKP4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 171 (65.3 bits), Expect = 6.9e-22, Sum P(2) = 6.9e-22
 Identities = 43/131 (32%), Positives = 70/131 (53%)

Query:    76 KSLLESGGVERLMNITKQR-QKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVT 134
             K+L +SGG+E+L+NITK R  + + +V+K A QVL T+WQ+++LR +YKK GW +  F+T
Sbjct:   955 KALADSGGIEKLVNITKGRGDRSSLKVVKAAAQVLNTLWQYRDLRSIYKKDGWNQNHFIT 1014

Query:   135 KTVXXXXXXXXXXXXXXXTLNRPMA----SQGGTRYEDRT--IQRPNQNMEASRSLIQNY 188
               V               T N+ M+    S G T        ++ P    + ++  +Q Y
Sbjct:  1015 P-VSTLERDRFKSHPSLSTTNQQMSPVIQSVGSTSSSPALLGVRDPRSEYDRTQPPMQYY 1073

Query:   189 TNYFTSTLRRL 199
             ++   +T R L
Sbjct:  1074 SSQGDATHRGL 1084

GO:0010628 "positive regulation of gene expression" evidence=ISS

GO:0007043 "cell-cell junction assembly" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0030057 "desmosome" evidence=ISS

GO:0005911 "cell-cell junction" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005856 "cytoskeleton" evidence=ISS

GO:0072686 "mitotic spindle" evidence=ISS

GO:0051233 "spindle midzone" evidence=ISS

GO:0044291 "cell-cell contact zone" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0009898 "internal side of plasma membrane" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0000922 "spindle pole" evidence=ISS

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=ISS

GO:0032321 "positive regulation of Rho GTPase activity" evidence=ISS

MGI|MGI:109281 Pkp4 "plakophilin 4" [Mus musculus (taxid:10090)]

 Score = 170 (64.9 bits), Expect = 8.7e-22, Sum P(2) = 8.7e-22
 Identities = 43/131 (32%), Positives = 69/131 (52%)

Query:    76 KSLLESGGVERLMNITKQR-QKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVT 134
             K+L +SGG+E+L+NITK R  + + +V+K A QVL T+WQ+++LR +YKK GW +  F+T
Sbjct:   953 KALADSGGIEKLVNITKGRGDRSSLKVVKAAAQVLNTLWQYRDLRSIYKKDGWNQNHFIT 1012

Query:   135 KTVXXXXXXXXXXXXXXXTLNRPMA----SQGGTRYEDRT--IQRPNQNMEASRSLIQNY 188
               V               T N+ M+    S G T        I+ P    + ++  +Q Y
Sbjct:  1013 P-VSTLERDRFKSHPSLSTTNQQMSPIIQSVGSTSSSPALLGIREPRSEYDRTQPPMQYY 1071

Query:   189 TNYFTSTLRRL 199
              +   +T + L
Sbjct:  1072 NSQGDTTHKGL 1082

GO:0000922 "spindle pole" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005911 "cell-cell junction" evidence=ISO

GO:0007155 "cell adhesion" evidence=IEA

GO:0009898 "internal side of plasma membrane" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030057 "desmosome" evidence=ISO

GO:0030496 "midbody" evidence=ISO

GO:0032321 "positive regulation of Rho GTPase activity" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0051233 "spindle midzone" evidence=ISO

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=ISO

GO:0072686 "mitotic spindle" evidence=ISO

UNIPROTKB|H0VKQ9 PKP4 "Uncharacterized protein" [Cavia porcellus (taxid:10141)]

 Score = 170 (64.9 bits), Expect = 8.7e-22, Sum P(2) = 8.7e-22
 Identities = 43/131 (32%), Positives = 69/131 (52%)

Query:    76 KSLLESGGVERLMNITKQR-QKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVT 134
             K+L +SGG+E+L+NITK R  + + +V+K A QVL T+WQ+++LR +YKK GW +  F+T
Sbjct:   954 KALADSGGIEKLVNITKGRGDRSSLKVVKAAAQVLNTLWQYRDLRSIYKKDGWNQNHFIT 1013

Query:   135 KTVXXXXXXXXXXXXXXXTLNRPMA----SQGGTRYEDRT--IQRPNQNMEASRSLIQNY 188
               V               T N+ M+    S G T        I+ P    + ++  +Q Y
Sbjct:  1014 P-VSTLERDRFKSHPSLSTTNQQMSPIIQSVGSTSSSPALLGIREPRSEYDRTQPPMQYY 1072

Query:   189 TNYFTSTLRRL 199
              +   +T + L
Sbjct:  1073 NSQGDATHKGL 1083

GO:0000922 "spindle pole" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005856 "cytoskeleton" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005911 "cell-cell junction" evidence=ISS

GO:0007043 "cell-cell junction assembly" evidence=ISS

GO:0009898 "internal side of plasma membrane" evidence=ISS

GO:0010628 "positive regulation of gene expression" evidence=ISS

GO:0030057 "desmosome" evidence=ISS

GO:0032321 "positive regulation of Rho GTPase activity" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0051233 "spindle midzone" evidence=ISS

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=ISS

GO:0072686 "mitotic spindle" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0044291 "cell-cell contact zone" evidence=ISS

UNIPROTKB|G1P2V0 PKP4 "Uncharacterized protein" [Myotis lucifugus (taxid:59463)]

 Score = 168 (64.2 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
 Identities = 43/131 (32%), Positives = 69/131 (52%)

Query:    76 KSLLESGGVERLMNITKQR-QKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVT 134
             K+L +SGG+E+L+NITK R  + + +V+K A QVL T+WQ+++LR +YKK GW +  F+T
Sbjct:   928 KALADSGGIEKLVNITKGRGDRSSLKVVKAAAQVLNTLWQYRDLRSIYKKDGWNQNHFIT 987

Query:   135 KTVXXXXXXXXXXXXXXXTLNRPMA----SQGGTRYEDRT--IQRPNQNMEASRSLIQNY 188
               V               T N+ M+    S G T        I+ P    + ++  +Q Y
Sbjct:   988 P-VSTLERDRFKSHPSLSTTNQQMSPIIQSVGSTSSSPALLGIRDPRSEYDRTQPPMQYY 1046

Query:   189 TNYFTSTLRRL 199
              +   +T + L
Sbjct:  1047 NSQGDATHKGL 1057

GO:0000922 "spindle pole" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005856 "cytoskeleton" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005911 "cell-cell junction" evidence=ISS

GO:0007043 "cell-cell junction assembly" evidence=ISS

GO:0009898 "internal side of plasma membrane" evidence=ISS

GO:0010628 "positive regulation of gene expression" evidence=ISS

GO:0030057 "desmosome" evidence=ISS

GO:0032321 "positive regulation of Rho GTPase activity" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0051233 "spindle midzone" evidence=ISS

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=ISS

GO:0072686 "mitotic spindle" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0044291 "cell-cell contact zone" evidence=ISS

UNIPROTKB|F7GD17 PKP4 "Uncharacterized protein" [Callithrix jacchus (taxid:9483)]

 Score = 168 (64.2 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
 Identities = 43/131 (32%), Positives = 69/131 (52%)

Query:    76 KSLLESGGVERLMNITKQR-QKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVT 134
             K+L +SGG+E+L+NITK R  + + +V+K A QVL T+WQ+++LR +YKK GW +  F+T
Sbjct:   954 KALADSGGIEKLVNITKGRGDRSSLKVVKAAAQVLNTLWQYRDLRSIYKKDGWNQNHFIT 1013

Query:   135 KTVXXXXXXXXXXXXXXXTLNRPMA----SQGGTRYEDRT--IQRPNQNMEASRSLIQNY 188
               V               T N+ M+    S G T        I+ P    + ++  +Q Y
Sbjct:  1014 P-VSTLERDRFKSHPSLSTTNQQMSPIIQSVGSTSSSPALLGIRDPRSEYDRTQPPMQYY 1072

Query:   189 TNYFTSTLRRL 199
              +   +T + L
Sbjct:  1073 NSQGDATHKGL 1083

GO:0000922 "spindle pole" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005856 "cytoskeleton" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005911 "cell-cell junction" evidence=ISS

GO:0007043 "cell-cell junction assembly" evidence=ISS

GO:0009898 "internal side of plasma membrane" evidence=ISS

GO:0010628 "positive regulation of gene expression" evidence=ISS

GO:0030057 "desmosome" evidence=ISS

GO:0032321 "positive regulation of Rho GTPase activity" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0051233 "spindle midzone" evidence=ISS

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=ISS

GO:0072686 "mitotic spindle" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0044291 "cell-cell contact zone" evidence=ISS

UNIPROTKB|Q99569 PKP4 "Plakophilin-4" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
 Identities = 43/131 (32%), Positives = 69/131 (52%)

Query:    76 KSLLESGGVERLMNITKQR-QKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVT 134
             K+L +SGG+E+L+NITK R  + + +V+K A QVL T+WQ+++LR +YKK GW +  F+T
Sbjct:   954 KALADSGGIEKLVNITKGRGDRSSLKVVKAAAQVLNTLWQYRDLRSIYKKDGWNQNHFIT 1013

Query:   135 KTVXXXXXXXXXXXXXXXTLNRPMA----SQGGTRYEDRT--IQRPNQNMEASRSLIQNY 188
               V               T N+ M+    S G T        I+ P    + ++  +Q Y
Sbjct:  1014 P-VSTLERDRFKSHPSLSTTNQQMSPIIQSVGSTSSSPALLGIRDPRSEYDRTQPPMQYY 1072

Query:   189 TNYFTSTLRRL 199
              +   +T + L
Sbjct:  1073 NSQGDATHKGL 1083

GO:0007155 "cell adhesion" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000922 "spindle pole" evidence=IDA

GO:0051233 "spindle midzone" evidence=IDA

GO:0072686 "mitotic spindle" evidence=IDA

GO:0030496 "midbody" evidence=IDA

GO:0009898 "internal side of plasma membrane" evidence=IDA

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=IMP

GO:0032321 "positive regulation of Rho GTPase activity" evidence=IDA

GO:0044291 "cell-cell contact zone" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005911 "cell-cell junction" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030057 "desmosome" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IDA

GO:0030155 "regulation of cell adhesion" evidence=NAS

GO:0007267 "cell-cell signaling" evidence=NAS

GO:0007043 "cell-cell junction assembly" evidence=ISS

GO:0010628 "positive regulation of gene expression" evidence=ISS

UNIPROTKB|G1T5G1 PKP4 "Uncharacterized protein" [Oryctolagus cuniculus (taxid:9986)]

 Score = 168 (64.2 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
 Identities = 43/131 (32%), Positives = 69/131 (52%)

Query:    76 KSLLESGGVERLMNITKQR-QKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVT 134
             K+L +SGG+E+L+NITK R  + + +V+K A QVL T+WQ+++LR +YKK GW +  F+T
Sbjct:   954 KALADSGGIEKLVNITKGRGDRSSLKVVKAAAQVLNTLWQYRDLRSIYKKDGWNQNHFIT 1013

Query:   135 KTVXXXXXXXXXXXXXXXTLNRPMA----SQGGTRYEDRT--IQRPNQNMEASRSLIQNY 188
               V               T N+ M+    S G T        I+ P    + ++  +Q Y
Sbjct:  1014 P-VSTLERDRFKSHPSLSTTNQQMSPIIQSVGSTSSSPALLGIRDPRSEYDRTQPPMQYY 1072

Query:   189 TNYFTSTLRRL 199
              +   +T + L
Sbjct:  1073 NSQGDATHKGL 1083

GO:0000922 "spindle pole" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005856 "cytoskeleton" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005911 "cell-cell junction" evidence=ISS

GO:0007043 "cell-cell junction assembly" evidence=ISS

GO:0009898 "internal side of plasma membrane" evidence=ISS

GO:0010628 "positive regulation of gene expression" evidence=ISS

GO:0030057 "desmosome" evidence=ISS

GO:0032321 "positive regulation of Rho GTPase activity" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0051233 "spindle midzone" evidence=ISS

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=ISS

GO:0072686 "mitotic spindle" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0044291 "cell-cell contact zone" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
KOG1048|consensus	717		99.9
KOG1048|consensus	717		99.75

>KOG1048|consensus

Probab=99.90  E-value=3e-25  Score=216.10  Aligned_cols=83  Identities=36%  Similarity=0.458  Sum_probs=76.5

Q ss_pred             HHHHHhhhhhhhhccccccHHHHHHhhhhhhHHHHHHHHHHHHHHhhccCCcchhhhHhhhcCCCCcchHHH-HHHHHHH
Q psy15594         31 LNEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVL-KFAGQVL  109 (200)
Q Consensus        31 l~evf~natg~lRNlSsa~~~aRq~mR~c~gLIdSl~~~i~~~v~~~~~d~kgvEN~VcIlrnlS~~~~k~~-kAAs~lL  109 (200)
                      +.+||+|+||||||+||++++|||+||+|.||||+|+++++++++++++|+|.|||||||+||+||..+.|+ .+..+++
T Consensus       387 ~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~  466 (717)
T KOG1048|consen  387 DSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVL  466 (717)
T ss_pred             cceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHh
Confidence            467999999999999999999999999999999999999999999999999999999999999999999887 5666666


Q ss_pred             HHhh
Q psy15594        110 FTMW  113 (200)
Q Consensus       110 ~smW  113 (200)
                      +..=
T Consensus       467 ~~~~  470 (717)
T KOG1048|consen  467 ANIA  470 (717)
T ss_pred             hccc
Confidence            6554

>KOG1048|consensus

Probab=99.75  E-value=1.6e-18  Score=169.50  Aligned_cols=97  Identities=39%  Similarity=0.594  Sum_probs=92.3

Q ss_pred             ChhhhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhhccccccHHHHHHhhhhhhHHHHHHHHHHHHHHhhccC
Q psy15594          1 MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLE   80 (200)
Q Consensus         1 ~~dLv~kLp~~~~~~~~~lsd~ti~~vl~~l~evf~natg~lRNlSsa~~~aRq~mR~c~gLIdSl~~~i~~~v~~~~~d   80 (200)
                      |+|||.+||++++  ...+++||+.+||+++.+++.+.....|                                 ++++
T Consensus       608 ~~~lv~~Lp~~~~--~~~~sedtv~~vc~tl~niv~~~~~nAk---------------------------------dl~~  652 (717)
T KOG1048|consen  608 IPDLVRCLPGSGP--STSLSEDTVRAVCHTLNNIVRKNVLNAK---------------------------------DLLE  652 (717)
T ss_pred             HHHHHHhCcCCCC--CcCchHHHHHHHHHhHHHHHHHhHHHHH---------------------------------HHHh
Confidence            7899999999887  5688999999999999999999888888                                 8899


Q ss_pred             CcchhhhHhhhcCCCCcchHHHHHHHHHHHHhhchhHhHHHHHHcCCccccccc
Q psy15594         81 SGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVT  134 (200)
Q Consensus        81 ~kgvEN~VcIlrnlS~~~~k~~kAAs~lL~smW~~keL~~~yKK~G~kK~~F~~  134 (200)
                      .+|++++|.|+++  ++++|++|||++||++||+|+|||..|||+||+|+||..
T Consensus       653 ~~g~~kL~~I~~s--~~S~k~~kaAs~vL~~lW~y~eLh~~~kk~g~~q~~F~~  704 (717)
T KOG1048|consen  653 IKGIPKLRLISKS--QHSPKEFKAASSVLDVLWQYKELHFKLKKKGFKQQDFYD  704 (717)
T ss_pred             ccChHHHHHHhcc--cCCHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHh
Confidence            9999999999998  889999999999999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	200
3l6x_A	584	Crystal Structure Of P120 Catenin In Complex With E		5e-10
3tt9_A	233	Crystal Structure Of The Stable Degradation Fragmen		3e-04

>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With E-Cadherin Length = 584

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 52/182 (28%)
Query: 1   MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
           + +LV+ LP G        S+DT+ ++L T+NEVI +N E           A KKLRE +
Sbjct: 397 IPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE-----------AAKKLRETQ 445
Query: 61  GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELRE 120
                                 G+E+L+ I K   + + + ++ A  VL T+W ++ELR+
Sbjct: 446 ----------------------GIEKLVLINKSGNR-SEKEVRAAALVLQTIWGYKELRK 482
Query: 121 VYKKHGWKEQDFVTKTVXXXXXXXXXXXXXXXTLNRPMASQGGTRYEDRTIQRPNQNMEA 180
             +K GWK+ DF                     LN    SQ    Y+D T+   ++N ++
Sbjct: 483 PLEKEGWKKSDF------------------QVNLNNASRSQSSHSYDDSTLPLIDRNQKS 524
Query: 181 SR 182
            +
Sbjct: 525 DK 526

>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant Length = 233

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 43  RNASSAGEYARKKLRECEGLIDSLLYVVKSAI 74
           RN SSAG   RK +R C+GLIDSL++ V+  I
Sbjct: 176 RNMSSAGADGRKAMRRCDGLIDSLVHYVRGTI 207

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-28
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-04
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-10
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  108 bits (271), Expect = 6e-28
 Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 35/191 (18%)

Query: 1   MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
           + +LV+ LP G        S+DT+ ++L T+NEVI +N E ++                 
Sbjct: 397 IPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAK----------------- 439

Query: 61  GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELRE 120
                            L E+ G+E+L+ I K     + + ++ A  VL T+W ++ELR+
Sbjct: 440 ----------------KLRETQGIEKLVLINKSG-NRSEKEVRAAALVLQTIWGYKELRK 482

Query: 121 VYKKHGWKEQDFVTKTVAARNAGPNSPNNANSTLNRPMASQGGTRYEDRTIQRPNQNMEA 180
             +K GWK+ DF      A  +   S +  +STL     +Q   +  DR   + +     
Sbjct: 483 PLEKEGWKKSDFQVNLNNASRSQS-SHSYDDSTLPLIDRNQKSDKKPDREEIQMSNMGSN 541

Query: 181 SRSLIQNYTNY 191
           ++SL  NY+  
Sbjct: 542 TKSLDNNYSTP 552

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 4   LVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECEGLI 63
           L  ++   ++  ++  ++D     +     V+   A   RN SS    AR+KLREC+GL+
Sbjct: 179 LTDEVIIPHSGWEREPNEDCKPRHIEW-ESVLTNTAGCLRNVSSERSEARRKLRECDGLV 237

Query: 64  DSLLYVVKSAIEKSLLESGGVE 85
           D+L+++V++ I +   +S  VE
Sbjct: 238 DALIFIVQAEIGQKDSDSKLVE 259

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 57.5 bits (138), Expect = 3e-10
 Identities = 16/121 (13%), Positives = 39/121 (32%), Gaps = 37/121 (30%)

Query: 1   MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
             ++ + L S         S+D +++   T+  ++    + +                  
Sbjct: 373 FPEVTRLLTSHTGNTSN--SEDILSSACYTVRNLMASQPQLA------------------ 412

Query: 61  GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELRE 120
                          K    S  +  ++N+ +     +P+  + A  +L  MW  +EL+ 
Sbjct: 413 ---------------KQYFSSSMLNNIINLCRSSA--SPKAAEAARLLLSDMWSSKELQG 455

Query: 121 V 121
           V
Sbjct: 456 V 456

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 19/43 (44%), Positives = 25/43 (58%)

Query: 43  RNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVE 85
           RN SSAG   RK +R C+GLIDSL++ V+  I     +    E
Sbjct: 176 RNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATE 218

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 9e-05
 Identities = 19/138 (13%), Positives = 41/138 (29%), Gaps = 26/138 (18%)

Query: 54  KKLRECEGLIDSLLYVVKSAIEKSLLESG----GVERLMNITKQRQKYTPRVLKFAGQVL 109
               +C+ + D    ++       ++ S     G  RL      +Q+    V KF  +V 
Sbjct: 30  VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM--VQKFVEEV- 86

Query: 110 FTMWQHQELREVYKKHGWKEQDFVTKTVAARNAGPNSPNNA-NSTLNRPMASQGGTRYED 168
                   LR  Y         F+   +      P+          +R         +  
Sbjct: 87  --------LRINY--------KFLMSPIKTEQRQPSMMTRMYIEQRDR--LYNDNQVFAK 128

Query: 169 RTIQRPNQNMEASRSLIQ 186
             + R    ++  ++L++
Sbjct: 129 YNVSRLQPYLKLRQALLE 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.66
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.66
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	98.1
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	98.08
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	93.24
3nmz_A	458	APC variant protein; protein-protein complex, arma	92.1
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	90.73
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	86.65
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	86.3
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	85.57
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	85.53
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	84.94
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	83.28
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	82.87
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	81.3
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	80.8
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	80.16

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.66  E-value=1e-16  Score=152.40  Aligned_cols=122  Identities=35%  Similarity=0.581  Sum_probs=81.8

Q ss_pred             ChhhhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhhccccccHHHHHHhhhhhhHHHHHHHHHHHHHHhhccC
Q psy15594          1 MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLE   80 (200)
Q Consensus         1 ~~dLv~kLp~~~~~~~~~lsd~ti~~vl~~l~evf~natg~lRNlSsa~~~aRq~mR~c~gLIdSl~~~i~~~v~~~~~d   80 (200)
                      ++.||+.|+.++.++....+++++..+|.++.++........+                                 ...+
T Consensus       397 ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~---------------------------------~I~~  443 (584)
T 3l6x_A          397 IPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAK---------------------------------KLRE  443 (584)
T ss_dssp             HHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHH---------------------------------HHHH
T ss_pred             HHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHH---------------------------------HHHH
Confidence            4678999998765444456788888888877766654444443                                 4577


Q ss_pred             CcchhhhHhhhcCCCCcchHHHHHHHHHHHHhhchhHhHHHHHHcCCccccccchhhhhhccCCCCCCCCCCCCCCCccc
Q psy15594         81 SGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVTKTVAARNAGPNSPNNANSTLNRPMAS  160 (200)
Q Consensus        81 ~kgvEN~VcIlrnlS~~~~k~~kAAs~lL~smW~~keL~~~yKK~G~kK~~F~~~t~~a~~~~~~~~~~~~~~l~~p~~s  160 (200)
                      .++|+.+|.++++.+ +.+++.|+|+.+|++||+|+|||+.|||+||+|+||++.+                  ++|+.+
T Consensus       444 ~g~I~~Lv~LL~s~~-~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~~~~~f~~~~------------------~~~~~~  504 (584)
T 3l6x_A          444 TQGIEKLVLINKSGN-RSEKEVRAAALVLQTIWGYKELRKPLEKEGWKKSDFQVNL------------------NNASRS  504 (584)
T ss_dssp             TTHHHHHHHHHTCSS-SCHHHHHHHHHHHHHHHTSHHHHHHHHTTTCCGGGGCCC-------------------------
T ss_pred             CCChHHHHHHHhCCC-CChHHHHHHHHHHHHHHcCHHHHHHHHHcCCCHHHhcccc------------------CCCCCC
Confidence            889999999999743 6789999999999999999999999999999999998621                  356677


Q ss_pred             CCCcccccccccCC
Q psy15594        161 QGGTRYEDRTIQRP  174 (200)
Q Consensus       161 ~~~~~y~~~t~~~~  174 (200)
                      +|+..|+|.|+|..
T Consensus       505 ~~~~~~~~~~~~~~  518 (584)
T 3l6x_A          505 QSSHSYDDSTLPLI  518 (584)
T ss_dssp             --------------
T ss_pred             CCCCCCCccccchh
Confidence            78888888888775

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.66  E-value=3.3e-17  Score=139.63  Aligned_cols=68  Identities=29%  Similarity=0.377  Sum_probs=65.2

Q ss_pred             HHHHhhhhhhhhccccccHHHHHHhhhhhhHHHHHHHHHHHHHHhhccCCcchhhhHhhhcCCCCcch
Q psy15594         32 NEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTP   99 (200)
Q Consensus        32 ~evf~natg~lRNlSsa~~~aRq~mR~c~gLIdSl~~~i~~~v~~~~~d~kgvEN~VcIlrnlS~~~~   99 (200)
                      .+||.|++||+||||++++++|+.||+|.|||++|++|++.+++++++|+|++|||||++|||||+.+
T Consensus       165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~~~  232 (233)
T 3tt9_A          165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQLE  232 (233)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhhc
Confidence            47899999999999999999999999999999999999999999999999999999999999999753

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.00  E-value=1.5e-10  Score=110.09  Aligned_cols=71  Identities=32%  Similarity=0.490  Sum_probs=66.6

Q ss_pred             HHHHhhhhhhhhccccccHHHHHHhhhhhhHHHHHHHHHHHHHHhhccCCcchhhhHhhhcCCCCcchHHH
Q psy15594         32 NEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVL  102 (200)
Q Consensus        32 ~evf~natg~lRNlSsa~~~aRq~mR~c~gLIdSl~~~i~~~v~~~~~d~kgvEN~VcIlrnlS~~~~k~~  102 (200)
                      .+||.|+++|+||||+.++..|+.|++|.|+|++||++++.++++...+++.+|||||++||++|...++.
T Consensus       206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~  276 (584)
T 3l6x_A          206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREI  276 (584)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHS
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccc
Confidence            47899999999999999999999999999999999999999999999999999999999999998766554

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=98.10  E-value=1.1e-06  Score=78.91  Aligned_cols=85  Identities=18%  Similarity=0.397  Sum_probs=64.9

Q ss_pred             ChhhhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhhccccccHHHHHHhhhhhhHHHHHHHHHHHHHHhhccC
Q psy15594          1 MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLE   80 (200)
Q Consensus         1 ~~dLv~kLp~~~~~~~~~lsd~ti~~vl~~l~evf~natg~lRNlSsa~~~aRq~mR~c~gLIdSl~~~i~~~v~~~~~d   80 (200)
                      |+.||+.|.++..+  ...+++++..+|.++.+++.......+                                 ...+
T Consensus       373 i~~Lv~lL~~~~~~--~~~~~~v~~~~l~~l~ni~~~~~~~~~---------------------------------~i~~  417 (457)
T 1xm9_A          373 FPEVTRLLTSHTGN--TSNSEDILSSACYTVRNLMASQPQLAK---------------------------------QYFS  417 (457)
T ss_dssp             HHHHHHTTTSCCSC--STTHHHHHHHHHHHHHHHHTTCTHHHH---------------------------------HHCC
T ss_pred             hHHHHHhccCCCCC--CCCcHHHHHHHHHHHHHHHhcCHHHHH---------------------------------HHHH
Confidence            35688888876543  234667777888888777765544333                                 4578


Q ss_pred             CcchhhhHhhhcCCCCcchHHHHHHHHHHHHhhchhHhHHHH
Q psy15594         81 SGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVY  122 (200)
Q Consensus        81 ~kgvEN~VcIlrnlS~~~~k~~kAAs~lL~smW~~keL~~~y  122 (200)
                      .++++.++.++++.  +.+++.|.|+.+|++||+|+|||++|
T Consensus       418 ~g~l~~L~~L~~~~--~~~~i~~~A~~~L~~~~~~~~l~~~~  457 (457)
T 1xm9_A          418 SSMLNNIINLCRSS--ASPKAAEAARLLLSDMWSSKELQGVL  457 (457)
T ss_dssp             HHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTSSSTTCSSCC
T ss_pred             cCCHHHHHHHHcCC--CcHHHHHHHHHHHHHHHcchhhhccC
Confidence            88999999999873  56899999999999999999999753

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=98.08  E-value=2.7e-06  Score=76.25  Aligned_cols=69  Identities=29%  Similarity=0.324  Sum_probs=62.7

Q ss_pred             HHHHhhhhhhhhccccccHHHHHHhhhhhhHHHHHHHHHHHHHHhhccCCcchhhhHhhhcCCCCcchHH
Q psy15594         32 NEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRV  101 (200)
Q Consensus        32 ~evf~natg~lRNlSsa~~~aRq~mR~c~gLIdSl~~~i~~~v~~~~~d~kgvEN~VcIlrnlS~~~~k~  101 (200)
                      .++++++.++++|+|+. +..|+.|++++|+|..|+..+++.+..+..+++.+|+++|+++|++|..+.+
T Consensus       157 ~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~  225 (457)
T 1xm9_A          157 PEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE  225 (457)
T ss_dssp             HHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHH
T ss_pred             HHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhcc
Confidence            45778999999999998 7899999999999999999999998888899999999999999999876544

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=93.24  E-value=0.14  Score=45.07  Aligned_cols=80  Identities=21%  Similarity=0.248  Sum_probs=52.3

Q ss_pred             HHHhhhhhhhhcccc---ccHHHHHHhhhhhhH--------------HHHHHHHHHHHHH------hhccCCcchhhhHh
Q psy15594         33 EVIKKNAEFSRNASS---AGEYARKKLRECEGL--------------IDSLLYVVKSAIE------KSLLESGGVERLMN   89 (200)
Q Consensus        33 evf~natg~lRNlSs---a~~~aRq~mR~c~gL--------------IdSl~~~i~~~v~------~~~~d~kgvEN~Vc   89 (200)
                      +++.++++++||+|+   .++..|+.++++.++              ...++.+|.++..      ....+.++|+-+|.
T Consensus       233 ~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~  312 (354)
T 3nmw_A          233 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKN  312 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHH
Confidence            477889999999998   588999999987532              2455556665552      12455666676666


Q ss_pred             hhcCCCCcchHHHHHHHHHHHHhhch
Q psy15594         90 ITKQRQKYTPRVLKFAGQVLFTMWQH  115 (200)
Q Consensus        90 IlrnlS~~~~k~~kAAs~lL~smW~~  115 (200)
                      ++++.   .++..+.|.-.|.++=.+
T Consensus       313 LL~s~---~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          313 LIHSK---HKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             TTTCS---SHHHHHHHHHHHHHHHTT
T ss_pred             HHhCC---CHHHHHHHHHHHHHHHcC
Confidence            66542   245556666666655544

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=92.10  E-value=0.22  Score=45.62  Aligned_cols=80  Identities=21%  Similarity=0.248  Sum_probs=57.5

Q ss_pred             HHHhhhhhhhhcccc---ccHHHHHHhhhhhhH--------------HHHHHHHHHHHHH------hhccCCcchhhhHh
Q psy15594         33 EVIKKNAEFSRNASS---AGEYARKKLRECEGL--------------IDSLLYVVKSAIE------KSLLESGGVERLMN   89 (200)
Q Consensus        33 evf~natg~lRNlSs---a~~~aRq~mR~c~gL--------------IdSl~~~i~~~v~------~~~~d~kgvEN~Vc   89 (200)
                      +++.++++++||+|+   .++..|+.|+++.++              ...++++|.++..      ....+.++++-++.
T Consensus       349 ~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~  428 (458)
T 3nmz_A          349 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKN  428 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence            477889999999998   688999999987532              2566777777663      22566777888888


Q ss_pred             hhcCCCCcchHHHHHHHHHHHHhhch
Q psy15594         90 ITKQRQKYTPRVLKFAGQVLFTMWQH  115 (200)
Q Consensus        90 IlrnlS~~~~k~~kAAs~lL~smW~~  115 (200)
                      ++++.   .++..+.|...|.++=.+
T Consensus       429 LL~s~---~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          429 LIHSK---HKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             TTTCS---SHHHHHHHHHHHHHHHTC
T ss_pred             HHhCC---CHHHHHHHHHHHHHHHcC
Confidence            77652   356667777777776544

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=90.73  E-value=1.6  Score=33.16  Aligned_cols=93  Identities=13%  Similarity=0.240  Sum_probs=67.8

Q ss_pred             HHHHhhhhhhhhccccccHHHHHHhhhhh--------------hHHHHHHHHHHHHHH------hhccCCcchhhhHhhh
Q psy15594         32 NEVIKKNAEFSRNASSAGEYARKKLRECE--------------GLIDSLLYVVKSAIE------KSLLESGGVERLMNIT   91 (200)
Q Consensus        32 ~evf~natg~lRNlSsa~~~aRq~mR~c~--------------gLIdSl~~~i~~~v~------~~~~d~kgvEN~VcIl   91 (200)
                      .++...+..++.|++..++..++.+.+..              .+...+++.|.++..      ....+.++++.++.++
T Consensus        68 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  147 (210)
T 4db6_A           68 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL  147 (210)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHH
Confidence            34667788899999988887777776543              223677778887764      2345788999999999


Q ss_pred             cCCCCcchHHHHHHHHHHHHhhch-hHhHHHHHHcCC
Q psy15594         92 KQRQKYTPRVLKFAGQVLFTMWQH-QELREVYKKHGW  127 (200)
Q Consensus        92 rnlS~~~~k~~kAAs~lL~smW~~-keL~~~yKK~G~  127 (200)
                      ++.   .++..+.|...|.++-.+ .+.+..+.+.|.
T Consensus       148 ~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~  181 (210)
T 4db6_A          148 SSP---NEQILQEALWALSNIASGGNEQKQAVKEAGA  181 (210)
T ss_dssp             TCS---CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred             cCC---CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCC
Confidence            863   467778888888888877 677766666664

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=86.65  E-value=1.6  Score=36.57  Aligned_cols=91  Identities=19%  Similarity=0.277  Sum_probs=64.9

Q ss_pred             HHhhhhhhhhccccccHHHHHHhhhhhhH--------------HHHHHHHHHHHHHh------hccCCcchhhhHhhhcC
Q psy15594         34 VIKKNAEFSRNASSAGEYARKKLRECEGL--------------IDSLLYVVKSAIEK------SLLESGGVERLMNITKQ   93 (200)
Q Consensus        34 vf~natg~lRNlSsa~~~aRq~mR~c~gL--------------IdSl~~~i~~~v~~------~~~d~kgvEN~VcIlrn   93 (200)
                      +..++..+++|++..++..|+.+++.-++              -..+++.|+++...      ...+.++|+-+|.++++
T Consensus        26 ~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~  105 (233)
T 3tt9_A           26 RISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQ  105 (233)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHcc
Confidence            44567778899998888888888876432              26678888887642      26678899999999984


Q ss_pred             CCCcchHHHHHHHHHHHHhhchhHhHHHHHHcC
Q psy15594         94 RQKYTPRVLKFAGQVLFTMWQHQELREVYKKHG  126 (200)
Q Consensus        94 lS~~~~k~~kAAs~lL~smW~~keL~~~yKK~G  126 (200)
                        .......+.|...|++|=.+.+.+..+-+.|
T Consensus       106 --~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~  136 (233)
T 3tt9_A          106 --TRDLETKKQITGLLWNLSSNDKLKNLMITEA  136 (233)
T ss_dssp             --CCCHHHHHHHHHHHHHHHTSGGGHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHHcChhhHHHHHhcc
Confidence              2235566777778888877777766554443

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=86.30  E-value=2.4  Score=38.78  Aligned_cols=90  Identities=19%  Similarity=0.206  Sum_probs=61.6

Q ss_pred             HHHhhhhhhhhccccccHHHHHHhhhhhhHHHHHHHHHHH-------------------------------------HHH
Q psy15594         33 EVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKS-------------------------------------AIE   75 (200)
Q Consensus        33 evf~natg~lRNlSsa~~~aRq~mR~c~gLIdSl~~~i~~-------------------------------------~v~   75 (200)
                      ++...+.++++|++..++ .++.+.+. |+|..|+..++.                                     +..
T Consensus       368 ~v~~~a~~~L~nLa~~~~-~~~~i~~~-~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~  445 (644)
T 2z6h_A          368 PLIKATVGLIRNLALCPA-NHAPLREQ-GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR  445 (644)
T ss_dssp             HHHHHHHHHHHHHTTSGG-GHHHHHHT-THHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHccCHH-HHHHHHHc-CCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc
Confidence            566677788889887554 33555543 445555554443                                     221


Q ss_pred             -----hhccCCcchhhhHhhhcCCCCcchHHHHHHHHHHHHhhchhHhHHHHHHcCC
Q psy15594         76 -----KSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHGW  127 (200)
Q Consensus        76 -----~~~~d~kgvEN~VcIlrnlS~~~~k~~kAAs~lL~smW~~keL~~~yKK~G~  127 (200)
                           ....+.++++-++.++.+   ..+...++|...|.+++.+++.+..+++.|.
T Consensus       446 ~~~~~~~l~~~~~i~~Lv~lL~~---~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~  499 (644)
T 2z6h_A          446 DVHNRIVIRGLNTIPLFVQLLYS---PIENIQRVAAGVLCELAQDKEAAEAIEAEGA  499 (644)
T ss_dssp             SHHHHHHHHHTTCHHHHHHHTTC---SCHHHHHHHHHHHHHHHTSHHHHHHHHHTTC
T ss_pred             CHHHHHHHHhCCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCHHHHHHHHHcCC
Confidence                 123467788888888865   2467788999999999999999998888875

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=85.57  E-value=3.3  Score=37.91  Aligned_cols=93  Identities=11%  Similarity=0.063  Sum_probs=64.0

Q ss_pred             HHHHhhhhhhhhccccccHHHHHHhhhhhhHHHHHHHHHH-----------------HHHH---------hhccCCcchh
Q psy15594         32 NEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVK-----------------SAIE---------KSLLESGGVE   85 (200)
Q Consensus        32 ~evf~natg~lRNlSsa~~~aRq~mR~c~gLIdSl~~~i~-----------------~~v~---------~~~~d~kgvE   85 (200)
                      .++..++.++++|++..++..|+.+.+. |.|..|+..+.                 ++..         ....+.++++
T Consensus       277 ~~v~~~a~~aL~~L~~~~~~~~~~v~~~-g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~  355 (644)
T 2z6h_A          277 INVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP  355 (644)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChH
Confidence            3567788899999999888888887764 34555555444                 3321         1134567888


Q ss_pred             hhHhhhcCCCCcchHHHHHHHHHHHHhhchhHhHHHHHHcCC
Q psy15594         86 RLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHGW  127 (200)
Q Consensus        86 N~VcIlrnlS~~~~k~~kAAs~lL~smW~~keL~~~yKK~G~  127 (200)
                      .++.++++.  ..+...++|...|.++=.+.+-+..+.+.|.
T Consensus       356 ~L~~lL~~~--~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~  395 (644)
T 2z6h_A          356 VVVKLLHPP--SHWPLIKATVGLIRNLALCPANHAPLREQGA  395 (644)
T ss_dssp             HHHHTTSTT--CCHHHHHHHHHHHHHHTTSGGGHHHHHHTTH
T ss_pred             HHHHHhCcc--CchHHHHHHHHHHHHHccCHHHHHHHHHcCC
Confidence            888888752  2356778888999999888777766665554

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=85.53  E-value=3.3  Score=31.36  Aligned_cols=78  Identities=14%  Similarity=0.257  Sum_probs=51.4

Q ss_pred             HHHhhhhhhhhccccccHHHHHHhhhhh--------------hHHHHHHHHHHHHHHh------hccCCcchhhhHhhhc
Q psy15594         33 EVIKKNAEFSRNASSAGEYARKKLRECE--------------GLIDSLLYVVKSAIEK------SLLESGGVERLMNITK   92 (200)
Q Consensus        33 evf~natg~lRNlSsa~~~aRq~mR~c~--------------gLIdSl~~~i~~~v~~------~~~d~kgvEN~VcIlr   92 (200)
                      ++...+..+++|++...+..++.+-+..              .+...+++.|.++...      ...+.++++.++.++.
T Consensus       111 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~  190 (210)
T 4db6_A          111 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS  190 (210)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh
Confidence            4677888899999988877766665432              2235556666666542      2445677888888887


Q ss_pred             CCCCcchHHHHHHHHHHHHhh
Q psy15594         93 QRQKYTPRVLKFAGQVLFTMW  113 (200)
Q Consensus        93 nlS~~~~k~~kAAs~lL~smW  113 (200)
                      +.   .++..+.|...|..+-
T Consensus       191 ~~---~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          191 HE---NEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             CS---CHHHHHHHHHHHHHHC
T ss_pred             CC---CHHHHHHHHHHHHHHh
Confidence            52   3566677777776654

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=84.94  E-value=5.8  Score=30.29  Aligned_cols=93  Identities=20%  Similarity=0.213  Sum_probs=63.2

Q ss_pred             HHHHhhhhhhhhccccccHHHHHHhhhhh--------------hHHHHHHHHHHHHHH------hhccCCcchhhhHhhh
Q psy15594         32 NEVIKKNAEFSRNASSAGEYARKKLRECE--------------GLIDSLLYVVKSAIE------KSLLESGGVERLMNIT   91 (200)
Q Consensus        32 ~evf~natg~lRNlSsa~~~aRq~mR~c~--------------gLIdSl~~~i~~~v~------~~~~d~kgvEN~VcIl   91 (200)
                      .++..++.+++.|++...+..++.+.+..              .+...++..|.++..      ....+.++++.++.++
T Consensus       100 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  179 (252)
T 4hxt_A          100 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL  179 (252)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHH
Confidence            45777888899999988777777766632              223556666666654      2345677888898888


Q ss_pred             cCCCCcchHHHHHHHHHHHHhhc-hhHhHHHHHHcCC
Q psy15594         92 KQRQKYTPRVLKFAGQVLFTMWQ-HQELREVYKKHGW  127 (200)
Q Consensus        92 rnlS~~~~k~~kAAs~lL~smW~-~keL~~~yKK~G~  127 (200)
                      .+.   .+.....|...|.++=. ..+....+.+.|.
T Consensus       180 ~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~  213 (252)
T 4hxt_A          180 TST---DSEVQKEAARALANIASGPTSAIKAIVDAGG  213 (252)
T ss_dssp             TCS---CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTH
T ss_pred             CCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence            752   35666777778888765 4566666666554

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=83.28  E-value=1.9  Score=33.56  Aligned_cols=80  Identities=15%  Similarity=0.287  Sum_probs=49.5

Q ss_pred             HHHhhhhhhhhccccccHHHHHHhhhhh--------------hHHHHHHHHHHHHHH------hhccCCcchhhhHhhhc
Q psy15594         33 EVIKKNAEFSRNASSAGEYARKKLRECE--------------GLIDSLLYVVKSAIE------KSLLESGGVERLMNITK   92 (200)
Q Consensus        33 evf~natg~lRNlSsa~~~aRq~mR~c~--------------gLIdSl~~~i~~~v~------~~~~d~kgvEN~VcIlr   92 (200)
                      ++...+..++.|++..++..++.+-+..              .+...+++.|.++..      ....+.++++.++.+++
T Consensus       153 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~  232 (252)
T 4db8_A          153 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS  232 (252)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhC
Confidence            4666788888899887766666554421              223555666666553      12356677777777776


Q ss_pred             CCCCcchHHHHHHHHHHHHhhch
Q psy15594         93 QRQKYTPRVLKFAGQVLFTMWQH  115 (200)
Q Consensus        93 nlS~~~~k~~kAAs~lL~smW~~  115 (200)
                      +.   .++..+.|...|.++..|
T Consensus       233 ~~---~~~v~~~A~~~L~~l~~~  252 (252)
T 4db8_A          233 HE---NEKIQKEAQEALEKLQSH  252 (252)
T ss_dssp             CS---SSHHHHTHHHHHHTTC--
T ss_pred             CC---CHHHHHHHHHHHHHHhcC
Confidence            52   356667777777777653

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=82.87  E-value=5.4  Score=38.07  Aligned_cols=91  Identities=19%  Similarity=0.204  Sum_probs=62.6

Q ss_pred             HHHhhhhhhhhccccccHHHHHHhhhhhhHHHHHHHHHHH-------------------------------------HHH
Q psy15594         33 EVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKS-------------------------------------AIE   75 (200)
Q Consensus        33 evf~natg~lRNlSsa~~~aRq~mR~c~gLIdSl~~~i~~-------------------------------------~v~   75 (200)
                      +|...+.++++|++..+ ..++.+.+. |+|..|+..++.                                     +..
T Consensus       504 ~v~~~A~~aL~nLa~~~-~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~  581 (780)
T 2z6g_A          504 PLIKATVGLIRNLALCP-ANHAPLREQ-GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR  581 (780)
T ss_dssp             HHHHHHHHHHHHHHSSH-HHHHHHHHT-THHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCH-HHHHHHHHC-CCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc
Confidence            57778888899998644 444555542 455555555443                                     111


Q ss_pred             -----hhccCCcchhhhHhhhcCCCCcchHHHHHHHHHHHHhhchhHhHHHHHHcCCc
Q psy15594         76 -----KSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWK  128 (200)
Q Consensus        76 -----~~~~d~kgvEN~VcIlrnlS~~~~k~~kAAs~lL~smW~~keL~~~yKK~G~k  128 (200)
                           ....+.++|+-++.++++.   .+...++|...|+.++.+++.+..+.+.|..
T Consensus       582 ~~~~~~~l~~~~~i~~Lv~lL~~~---~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i  636 (780)
T 2z6g_A          582 DIHNRIVIRGLNTIPLFVQLLYSP---IENIQRVAAGVLCELAQDKEAAEAIEAEGAT  636 (780)
T ss_dssp             SHHHHHHHHHTCCHHHHHHGGGCS---CHHHHHHHHHHHHHHHTSHHHHHHHHHTTCH
T ss_pred             ChhhHHHHHHCCcHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCHHHHHHHHHCCCH
Confidence                 1133677888888888752   4677888999999999999999988887754

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=81.30  E-value=6.2  Score=33.97  Aligned_cols=93  Identities=9%  Similarity=0.053  Sum_probs=63.8

Q ss_pred             HHHHhhhhhhhhccccccHHHHHHhhhhhhHHHHHH-----------------HHHHHHHH---------hhccCCcchh
Q psy15594         32 NEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLL-----------------YVVKSAIE---------KSLLESGGVE   85 (200)
Q Consensus        32 ~evf~natg~lRNlSsa~~~aRq~mR~c~gLIdSl~-----------------~~i~~~v~---------~~~~d~kgvE   85 (200)
                      .++..++.+++.|++..++..++.+.+.. .|..|+                 ..+.++..         ....+.++++
T Consensus       280 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~-~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~  358 (529)
T 1jdh_A          280 INVVTCAAGILSNLTCNNYKNKMMVCQVG-GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP  358 (529)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHTT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHcC-ChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChh
Confidence            35677888999999998888888877653 333333                 34444322         1334557888


Q ss_pred             hhHhhhcCCCCcchHHHHHHHHHHHHhhchhHhHHHHHHcCC
Q psy15594         86 RLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHGW  127 (200)
Q Consensus        86 N~VcIlrnlS~~~~k~~kAAs~lL~smW~~keL~~~yKK~G~  127 (200)
                      -++.++++.  ..+...++|...|.++-.+.+-+..+.+.|.
T Consensus       359 ~L~~lL~~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~  398 (529)
T 1jdh_A          359 VVVKLLHPP--SHWPLIKATVGLIRNLALCPANHAPLREQGA  398 (529)
T ss_dssp             HHHHTTSTT--CCHHHHHHHHHHHHHHTTSGGGHHHHHHTTH
T ss_pred             HHHHHhccc--cchHHHHHHHHHHHHHhcChhhhHHHHHcCC
Confidence            888888753  2346778888899999988877776666664

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=80.80  E-value=9.8  Score=33.21  Aligned_cols=89  Identities=16%  Similarity=0.119  Sum_probs=57.7

Q ss_pred             HHHHhhhhhhhhccccccHHHHHHhhhhhhHH---------------HHHHHHHHHHHHh-------hccCCcchhhhHh
Q psy15594         32 NEVIKKNAEFSRNASSAGEYARKKLRECEGLI---------------DSLLYVVKSAIEK-------SLLESGGVERLMN   89 (200)
Q Consensus        32 ~evf~natg~lRNlSsa~~~aRq~mR~c~gLI---------------dSl~~~i~~~v~~-------~~~d~kgvEN~Vc   89 (200)
                      .++-++++..++|++..++..|+.++...|.|               ..+++.|+++...       ...+.++|+-+|.
T Consensus        98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~  177 (354)
T 3nmw_A           98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME  177 (354)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence            34667889999999998888888877666644               3456666666542       1356788999998


Q ss_pred             hhcCCCCcchHHHHHHHHHHHHhhc-hhHhHHHH
Q psy15594         90 ITKQRQKYTPRVLKFAGQVLFTMWQ-HQELREVY  122 (200)
Q Consensus        90 IlrnlS~~~~k~~kAAs~lL~smW~-~keL~~~y  122 (200)
                      ++..  ...+...+.|...|.++=. ..+.+..+
T Consensus       178 lL~~--~~~~~~~~~A~~aL~nLs~~~~~nk~~i  209 (354)
T 3nmw_A          178 CALE--VKKESTLKSVLSALWNLSAHCTENKADI  209 (354)
T ss_dssp             HHHH--CCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhc--CCCHHHHHHHHHHHHHHHccChhhhHHH
Confidence            7532  1235556666666766655 33444433

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=80.16  E-value=7  Score=33.35  Aligned_cols=94  Identities=13%  Similarity=0.145  Sum_probs=65.4

Q ss_pred             HHhhhhhhhhccccccHHHHHHhhhhhh---------------HHHHHHHHHHHHHHh------hccCCcchhhhHhhhc
Q psy15594         34 VIKKNAEFSRNASSAGEYARKKLRECEG---------------LIDSLLYVVKSAIEK------SLLESGGVERLMNITK   92 (200)
Q Consensus        34 vf~natg~lRNlSsa~~~aRq~mR~c~g---------------LIdSl~~~i~~~v~~------~~~d~kgvEN~VcIlr   92 (200)
                      |-..+..++.|+...++..|+.+-++.+               +...++|.|-+++..      ...+.++++-++.+++
T Consensus        98 vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~  177 (296)
T 1xqr_A           98 LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ  177 (296)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc
Confidence            4445666777777777777776665532               235566777766642      2446789999999998


Q ss_pred             CCCCcchHHHHHHHHHHHHhhch-hHhHHHHHHcCCccc
Q psy15594         93 QRQKYTPRVLKFAGQVLFTMWQH-QELREVYKKHGWKEQ  130 (200)
Q Consensus        93 nlS~~~~k~~kAAs~lL~smW~~-keL~~~yKK~G~kK~  130 (200)
                      +.   .++.-+.|.-+|.+++.+ .+.+..+-+.|+-+.
T Consensus       178 ~~---d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~  213 (296)
T 1xqr_A          178 QQ---VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ  213 (296)
T ss_dssp             SS---CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred             CC---CHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence            62   467778889999999987 467778888887543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-09

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-09
 Identities = 15/121 (12%), Positives = 40/121 (33%), Gaps = 37/121 (30%)

Query: 1   MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
             ++ + L S     +   S+D +++   T+  ++    + ++                 
Sbjct: 373 FPEVTRLLTSHT--GNTSNSEDILSSACYTVRNLMASQPQLAK----------------- 413

Query: 61  GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELRE 120
                               S  +  ++N+ +     +P+  + A  +L  MW  +EL+ 
Sbjct: 414 ----------------QYFSSSMLNNIINLCRSSA--SPKAAEAARLLLSDMWSSKELQG 455

Query: 121 V 121
           V
Sbjct: 456 V 456

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.92
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	87.4
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	84.39

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.2e-06  Score=66.61  Aligned_cols=42  Identities=24%  Similarity=0.482  Sum_probs=35.9

Q ss_pred             ccCCcchhhhHhhhcCCCCcchHHHHHHHHHHHHhhchhHhHHH
Q psy15594         78 LLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREV  121 (200)
Q Consensus        78 ~~d~kgvEN~VcIlrnlS~~~~k~~kAAs~lL~smW~~keL~~~  121 (200)
                      ..+.++|+.++.++++  ...++..+||..+|++||+|+|+|+.
T Consensus       415 l~~~g~i~~L~~l~~~--~~~~~~~~aA~~~L~~L~~~~~~~~~  456 (457)
T d1xm9a1         415 YFSSSMLNNIINLCRS--SASPKAAEAARLLLSDMWSSKELQGV  456 (457)
T ss_dssp             HCCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTSSSTTCSSC
T ss_pred             HHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHHHcCHhhHhh
Confidence            4667788999999987  55689999999999999999999863

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.40  E-value=1.5  Score=35.96  Aligned_cols=97  Identities=7%  Similarity=0.062  Sum_probs=68.0

Q ss_pred             HHHHhhhhhhhhccccccHHHHHHhhhhhh----------------HHHHHHHHHHHHHH---------hhccCCcchhh
Q psy15594         32 NEVIKKNAEFSRNASSAGEYARKKLRECEG----------------LIDSLLYVVKSAIE---------KSLLESGGVER   86 (200)
Q Consensus        32 ~evf~natg~lRNlSsa~~~aRq~mR~c~g----------------LIdSl~~~i~~~v~---------~~~~d~kgvEN   86 (200)
                      .++...+.+++.|+++.++..++.+.+..+                +...++..++++..         ......++++-
T Consensus       280 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~  359 (529)
T d1jdha_         280 INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV  359 (529)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchh
Confidence            356777889999999988877776655432                22345556666542         12335677888


Q ss_pred             hHhhhcCCCCcchHHHHHHHHHHHHhhchhHhHHHHHHcCCccc
Q psy15594         87 LMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQ  130 (200)
Q Consensus        87 ~VcIlrnlS~~~~k~~kAAs~lL~smW~~keL~~~yKK~G~kK~  130 (200)
                      ++.+++..  ......+++..+|.++..+.+.+..+.+.|..+.
T Consensus       360 L~~ll~~~--~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~  401 (529)
T d1jdha_         360 VVKLLHPP--SHWPLIKATVGLIRNLALCPANHAPLREQGAIPR  401 (529)
T ss_dssp             HHHTTSTT--CCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHH
T ss_pred             HHHHHhcc--chHHHHHHHHHHHhhcchhhhhhhhhhhcccHHH
Confidence            88887652  2345567888899999999999999999887543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.39  E-value=0.58  Score=35.55  Aligned_cols=64  Identities=31%  Similarity=0.368  Sum_probs=53.5

Q ss_pred             HHHHhhhhhhhhccccccHHHHHHhhhhhhHHHHHHHHHHHHHHhhccCCcchhhhHhhhcCCCC
Q psy15594         32 NEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQK   96 (200)
Q Consensus        32 ~evf~natg~lRNlSsa~~~aRq~mR~c~gLIdSl~~~i~~~v~~~~~d~kgvEN~VcIlrnlS~   96 (200)
                      .++..++.+++++++..+ ..|+.+..+.|+|+.++.++++.......+.....++++.+++...
T Consensus       157 ~~v~~~a~~~l~~~~~~~-~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~  220 (457)
T d1xm9a1         157 PEVFFNATGCLRNLSSAD-AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSY  220 (457)
T ss_dssp             HHHHHHHHHHHHHHTTSH-HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCc-hHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhh
Confidence            356777888888887654 5788888999999999999999999889999999999999886543