Psyllid ID: psy1559

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MLQSTIGFTLLLFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSYNSLNMI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEEccccccEEEEEEEEEEEEEccccccccccccccccccccccccccEEEEEEEcccccccccccccEEEEEEEEcEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHcccccccccccEEEEEEEEEEEccccccEccccEEEEccccccccccccccccccEcccccEEEEccEEEEEEEEccccccccccccEEEEEEEEEEccccccccccccccEEEccccEEccc
Coil and Loop (DISEMBL)
MLQSTIGFTLLLFSYCaanqditldCHRRVYKYRVSqtdslgrkcwddievlscwgrcdsnetsdwrfpykrshhpvcqhGARALKVVILNNCEENVEQGTEVYRYLEALSckcsvcksseasceglryssynslnmi
Flexible Loop (DISEMBL)
MLQSTIGFTLLLFSYCAANQDITLDCHRRVYKYRvsqtdslgrkcWDDIEVLSCWGRCDsnetsdwrfpykrSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCksseasceglryssynslnmi
Low Complexity Region (SEG)
MLQSTIGFTLLLFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSYNSLNMI
Disordered region (IsUnstruct)
****TIGFTLLLFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSE**C**************
Disordered Region (DISOPRED)
***STIGFTLLLFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSS****NMI
Disordered Region (DISEMBL)
MLQSTIGFTLLLFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSYNSLNMI
Disordered Region (DISPRO)
*LQSTIGFTLLLFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSYNSLNMI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLQSTIGFTLLLFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSYNSLNMI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q86YW7	130	Glycoprotein hormone beta	yes	N/A	0.739	0.784	0.275	5e-07
Q812B2	130	Glycoprotein hormone beta	yes	N/A	0.789	0.838	0.258	4e-06

>sp|Q86YW7|GPHB5_HUMAN Glycoprotein hormone beta-5 OS=Homo sapiens GN=GPHB5 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 17  AANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHP 76
           + N    + C  R + +   +    G +   D    +CWGRC++ E      PY  +HH 
Sbjct: 27  SGNLRTFVGCAVREFTFLAKKPGCRGLRITTD----ACWGRCETWEKPILEPPYIEAHHR 82

Query: 77  VCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCE 125
           VC +       V L NC   V+     Y Y  A+ C C  C ++   CE
Sbjct: 83  VCTYNETKQVTVKLPNCAPGVDP---FYTYPVAIRCDCGACSTATTECE 128

Stimulates the thyroid. Binds and activates THSR, leading to increased cAMP production.
Homo sapiens (taxid: 9606)

>sp|Q812B2|GPHB5_MOUSE Glycoprotein hormone beta-5 OS=Mus musculus GN=Gphb5 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 12  LFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYK 71
           + S  + N    + C  R + +   +    G +   D    +CWGRC++ E      PY 
Sbjct: 22  VLSSSSGNLHTFVGCAVREFTFMAKKPGCRGLRITTD----ACWGRCETWEKPILEPPYI 77

Query: 72  RSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGL 127
            ++H VC +       V L NC   V+     Y Y  A+ C C  C ++   CE +
Sbjct: 78  EAYHRVCTYNETRQVTVKLPNCAPGVDP---FYTYPMAVRCDCGACSTATTECETI 130

Stimulates the thyroid. Binds and activates THSR, leading to increased cAMP production.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
255759839	157	TPA: putative glycoprotein hormone-beta5	0.818	0.719	0.672	2e-41
242014276	124	glycoprotein hormone beta-5 precursor, p	0.789	0.879	0.688	1e-40
350534624	141	uncharacterized protein LOC100168739 pre	0.789	0.773	0.596	4e-34
255759843	155	TPA: putative glycoprotein hormone-beta5	0.811	0.722	0.589	7e-34
158296827	171	AGAP008302-PA [Anopheles gambiae str. PE	0.833	0.672	0.539	3e-33
270014312	202	glycoprotein hormone beta 5 [Tribolium c	0.760	0.519	0.590	2e-32
170054821	164	glycoprotein hormone beta subunit [Culex	0.833	0.701	0.530	2e-31
189241093	148	PREDICTED: similar to AGAP008302-PA [Tri	0.789	0.736	0.563	3e-31
157119437	162	hypothetical protein AaeL_AAEL001474 [Ae	0.833	0.709	0.521	2e-30
66772453	170	IP08744p [Drosophila melanogaster]	0.746	0.605	0.553	1e-29

>gi|255759839|tpe|CAR95343.1| TPA: putative glycoprotein hormone-beta5 [Pediculus humanus corporis]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 95/113 (84%)

Query: 17  AANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHP 76
           + N D +LDC+RR Y +RV+QTDS GR CWD I V+SCWGRCDSNE SDWRFPYKRSHHP
Sbjct: 31  STNMDSSLDCNRRAYSHRVTQTDSEGRICWDTITVVSCWGRCDSNEISDWRFPYKRSHHP 90

Query: 77  VCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRY 129
           VC HG R  K VIL+NC+ +VE GTE++ ++EA+SC+CS+CKSSEA+C+G+RY
Sbjct: 91  VCIHGERKPKTVILSNCDNDVEPGTEIHEFMEAISCECSLCKSSEANCQGVRY 143

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014276|ref|XP_002427817.1| glycoprotein hormone beta-5 precursor, putative [Pediculus humanus corporis] gi|212512286|gb|EEB15079.1| glycoprotein hormone beta-5 precursor, putative [Pediculus humanus corporis]

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 93/109 (85%)

Query: 21  DITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQH 80
           D +LDC+RR Y +RV+QTDS GR CWD I V+SCWGRCDSNE SDWRFPYKRSHHPVC H
Sbjct: 2   DSSLDCNRRAYSHRVTQTDSEGRICWDTITVVSCWGRCDSNEISDWRFPYKRSHHPVCIH 61

Query: 81  GARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRY 129
           G R  K VIL+NC+ +VE GTE++ ++EA+SC+CS+CKSSEA+C+G+RY
Sbjct: 62  GERKPKTVILSNCDNDVEPGTEIHEFMEAISCECSLCKSSEANCQGVRY 110

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350534624|ref|NP_001232960.1| uncharacterized protein LOC100168739 precursor [Acyrthosiphon pisum] gi|257900429|tpe|CAR95344.2| TPA: putative glycoprotein hormone-beta5 [Acyrthosiphon pisum]

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 65/109 (59%), Positives = 82/109 (75%)

Query: 24  LDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGAR 83
           LDC+R++  ++VS TD  GR C D+I+V+SCWGRCDSNE SDWRFP+KRSHHPVC H  +
Sbjct: 25  LDCNRQLSTFQVSNTDENGRTCSDEIDVMSCWGRCDSNEVSDWRFPFKRSHHPVCIHDGQ 84

Query: 84  ALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSY 132
            L   +L NCEE V+ GTE Y + +A+SCKC  CKSSEA+CEG R   +
Sbjct: 85  VLTKFMLKNCEEGVQPGTEFYVFPQAMSCKCHTCKSSEAACEGYRSKDF 133

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255759843|tpe|CAR95345.1| TPA: putative glycoprotein hormone-beta5 [Tribolium castaneum]

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 79/112 (70%)

Query: 23  TLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGA 82
           T++CHRR+Y YRV+QTD  G++CWD + V++CWGRCDSNE SDWRFPYK+S+HPVC H  
Sbjct: 34  TIECHRRMYTYRVTQTDDNGKQCWDTLSVMACWGRCDSNEISDWRFPYKKSNHPVCVHYG 93

Query: 83  RALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSYNS 134
           R   VV L +CEE        Y YLEA  CKC  C SS+ SCEGLRY    S
Sbjct: 94  RNRSVVTLRHCEEGANPSAARYEYLEAAGCKCQQCSSSDTSCEGLRYRPQRS 145

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158296827|ref|XP_555160.3| AGAP008302-PA [Anopheles gambiae str. PEST] gi|157014899|gb|EAL39598.3| AGAP008302-PA [Anopheles gambiae str. PEST]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 62/115 (53%), Positives = 78/115 (67%)

Query: 24  LDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGAR 83
           L CH+R++ YRVSQTDS GR+CWD + VLSCWGRCDSNE SDWRFPYKRSHHPVC H  R
Sbjct: 44  LGCHKRLFTYRVSQTDSKGRECWDHVSVLSCWGRCDSNEISDWRFPYKRSHHPVCVHAGR 103

Query: 84  ALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSYNSLNMI 138
              V +L +C  + +     Y Y+E  SC C  C S++ SCEG +  +  ++  I
Sbjct: 104 TKAVALLRHCHPDADPAARQYEYMEPKSCNCQTCSSTDTSCEGPKQLNTEAVTKI 158

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014312|gb|EFA10760.1| glycoprotein hormone beta 5 [Tribolium castaneum]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 76/105 (72%)

Query: 23  TLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGA 82
           T++CHRR+Y YRV+QTD  G++CWD + V++CWGRCDSNE SDWRFPYK+S+HPVC H  
Sbjct: 34  TIECHRRMYTYRVTQTDDNGKQCWDTLSVMACWGRCDSNEISDWRFPYKKSNHPVCVHYG 93

Query: 83  RALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGL 127
           R   VV L +CEE        Y YLEA  CKC  C SS+ SCEG+
Sbjct: 94  RNRSVVTLRHCEEGANPSAARYEYLEAAGCKCQQCSSSDTSCEGV 138

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170054821|ref|XP_001863304.1| glycoprotein hormone beta subunit [Culex quinquefasciatus] gi|167874991|gb|EDS38374.1| glycoprotein hormone beta subunit [Culex quinquefasciatus] gi|255759847|tpe|CAR95347.1| TPA: putative glycoprotein hormone-beta5 [Culex quinquefasciatus]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 78/115 (67%)

Query: 24  LDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGAR 83
           L CH+RV+ YRVSQTDS GR+CWD + V SC GRCDSNE SDWRFPYKRSHHPVC H  R
Sbjct: 37  LGCHKRVFTYRVSQTDSKGRECWDHVSVWSCHGRCDSNEISDWRFPYKRSHHPVCMHAGR 96

Query: 84  ALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSYNSLNMI 138
              V +L +C  + +   ++Y Y+E  SC C  C S + SCEG +  + +++  I
Sbjct: 97  TRSVAVLRHCHPDADPEAKLYEYMEPKSCSCQTCTSMDTSCEGPKQLNTDAVTKI 151

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241093|ref|XP_970934.2| PREDICTED: similar to AGAP008302-PA [Tribolium castaneum]

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 79/110 (71%), Gaps = 1/110 (0%)

Query: 23  TLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGA 82
           T++CHRR+Y YRV+QTD  G++CWD + V++CWGRCDSNE SDWRFPYK+S+HPVC H  
Sbjct: 34  TIECHRRMYTYRVTQTDDNGKQCWDTLSVMACWGRCDSNEISDWRFPYKKSNHPVCVHYG 93

Query: 83  RALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSY 132
           R   VV L +CEE        Y YLEA  CKC  C SS+ SCE +R++ +
Sbjct: 94  RNRSVVTLRHCEEGANPSAARYEYLEAAGCKCQQCSSSDTSCE-VRFNDW 142

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157119437|ref|XP_001653381.1| hypothetical protein AaeL_AAEL001474 [Aedes aegypti] gi|108883164|gb|EAT47389.1| AAEL001474-PA [Aedes aegypti] gi|255759845|tpe|CAR95346.1| TPA: putative glycoprotein hormone-beta5 [Aedes aegypti]

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 74/115 (64%)

Query: 24  LDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGAR 83
           L CH+RV+ YR+SQ DS GR+CWD + V SC GRCDSNE SDWRFPYKRSHHPVC H  R
Sbjct: 35  LGCHKRVFTYRISQADSKGRECWDHVSVWSCHGRCDSNEISDWRFPYKRSHHPVCMHAGR 94

Query: 84  ALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSYNSLNMI 138
              V  L +C    +   ++Y Y+E  SC C  C S + SCEG +  S ++   I
Sbjct: 95  TRSVATLRHCHPEADAEAKLYEYMEPKSCSCQTCTSMDTSCEGPKQLSTDAATKI 149

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66772453|gb|AAY55538.1| IP08744p [Drosophila melanogaster]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 70/103 (67%)

Query: 24  LDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGAR 83
           L CHRRVY Y+V+Q+D  G +CWD + V SCWGRCDS+E SDW+FPYKRS HPVC H  R
Sbjct: 44  LGCHRRVYTYKVTQSDLQGHECWDYVSVWSCWGRCDSSEISDWKFPYKRSFHPVCVHAQR 103

Query: 84  ALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEG 126
            L V IL NC    E     Y+Y+EA++C C  C + + SCE 
Sbjct: 104 QLVVAILKNCHPKAEDSVSKYQYMEAVNCHCQTCSTQDTSCEA 146

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
FB|FBgn0063368	169	Gpb5 "Glycoprotein hormone bet	0.739	0.603	0.558	1.8e-32
ZFIN|ZDB-GENE-090319-4	134	gphb5 "glycoprotein hormone be	0.818	0.843	0.294	1.6e-08
UNIPROTKB|Q86YW7	130	GPHB5 "Glycoprotein hormone be	0.507	0.538	0.342	2e-08
UNIPROTKB|E1BXK9	129	LOC428919 "Uncharacterized pro	0.507	0.542	0.342	2.6e-08
UNIPROTKB|E2R731	130	GPHB5 "Uncharacterized protein	0.507	0.538	0.342	2.6e-08
MGI|MGI:2156540	130	Gphb5 "glycoprotein hormone be	0.775	0.823	0.263	5.3e-08
UNIPROTKB|F1SRQ9	130	LOC100526029 "Uncharacterized	0.775	0.823	0.263	8.7e-08
RGD|1359264	129	Gphb5 "glycoprotein hormone be	0.775	0.829	0.263	8.7e-08
UNIPROTKB|F6Y8D9	104	GPHB5 "Uncharacterized protein	0.333	0.442	0.369	0.00027

FB|FBgn0063368 Gpb5 "Glycoprotein hormone beta 5" [Drosophila melanogaster (taxid:7227)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 57/102 (55%), Positives = 70/102 (68%)

Query:    24 LDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGAR 83
             L CHRRVY Y+V+Q+D  G +CWD + V SCWGRCDS+E SDW+FPYKRS HPVC H  R
Sbjct:    43 LGCHRRVYTYKVTQSDLQGHECWDYVSVWSCWGRCDSSEISDWKFPYKRSFHPVCVHAQR 102

Query:    84 ALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCE 125
              L V IL NC    E     Y+Y+EA++C C  C + + SCE
Sbjct:   103 QLVVAILKNCHPKAEDSVSKYQYMEAVNCHCQTCSTQDTSCE 144

GO:0005179 "hormone activity" evidence=IDA;NAS

GO:0005576 "extracellular region" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IDA

ZFIN|ZDB-GENE-090319-4 gphb5 "glycoprotein hormone beta 5" [Danio rerio (taxid:7955)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 35/119 (29%), Positives = 52/119 (43%)

Query:     9 TLLLFSYCAANQDITLDCHRRVYKYRVSQTDSLGRK--CWD-DIEVLSCWGRCDSNETSD 65
             TL +   C A  + ++   RR     V +   L RK  C    I   +CWGRC++ +   
Sbjct:    15 TLAVLLCCGAYTEASVLNLRRFIGCAVREFTFLARKPGCGGLHITTDACWGRCETWQKPV 74

Query:    66 WRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASC 124
                P+  SH  VC +     + V+L NC   V+     Y +  AL C C +C +S   C
Sbjct:    75 LEPPFIESHQRVCTYNETRQETVLLPNCTAGVDPS---YSFPVALRCDCGLCLTSTTEC 130

GO:0005576 "extracellular region" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

UNIPROTKB|Q86YW7 GPHB5 "Glycoprotein hormone beta-5" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 25/73 (34%), Positives = 34/73 (46%)

Query:    53 SCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSC 112
             +CWGRC++ E      PY  +HH VC +       V L NC   V+     Y Y  A+ C
Sbjct:    59 ACWGRCETWEKPILEPPYIEAHHRVCTYNETKQVTVKLPNCAPGVDP---FYTYPVAIRC 115

Query:   113 KCSVCKSSEASCE 125
              C  C ++   CE
Sbjct:   116 DCGACSTATTECE 128

GO:0005179 "hormone activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|E1BXK9 LOC428919 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 25/73 (34%), Positives = 35/73 (47%)

Query:    53 SCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSC 112
             +CWGRC++ E      PY  S+H VC +    L  V+L  C   V+     Y Y  A+ C
Sbjct:    58 ACWGRCETWERPLLHPPYIESYHRVCTYNETKLVTVMLPKCGPGVDP---FYTYPVAIRC 114

Query:   113 KCSVCKSSEASCE 125
              C  C ++   CE
Sbjct:   115 NCDFCSTATTECE 127

GO:0005179 "hormone activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|E2R731 GPHB5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 25/73 (34%), Positives = 34/73 (46%)

Query:    53 SCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSC 112
             +CWGRC++ E      PY  +HH VC +       V L NC   V+     Y Y  A+ C
Sbjct:    59 ACWGRCETWEKPILEPPYIEAHHRVCTYNETRQVTVKLPNCAPGVDP---FYTYPVAVRC 115

Query:   113 KCSVCKSSEASCE 125
              C  C ++   CE
Sbjct:   116 DCGACSTATTECE 128

GO:0005576 "extracellular region" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

MGI|MGI:2156540 Gphb5 "glycoprotein hormone beta 5" [Mus musculus (taxid:10090)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 30/114 (26%), Positives = 47/114 (41%)

Query:    12 LFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYK 71
             + S  + N    + C  R + +   +    G +   D    +CWGRC++ E      PY 
Sbjct:    22 VLSSSSGNLHTFVGCAVREFTFMAKKPGCRGLRITTD----ACWGRCETWEKPILEPPYI 77

Query:    72 RSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCE 125
              ++H VC +       V L NC   V+     Y Y  A+ C C  C ++   CE
Sbjct:    78 EAYHRVCTYNETRQVTVKLPNCAPGVDP---FYTYPMAVRCDCGACSTATTECE 128

GO:0002155 "regulation of thyroid hormone mediated signaling pathway" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005179 "hormone activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|F1SRQ9 LOC100526029 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 30/114 (26%), Positives = 47/114 (41%)

Query:    12 LFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYK 71
             + S  + N    + C  R + +   +    G +   D    +CWGRC++ E      PY 
Sbjct:    22 VLSTSSGNLRTFVGCAVREFTFLAKKPGCRGLRITTD----ACWGRCETWEKPILEPPYI 77

Query:    72 RSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCE 125
              ++H VC +       V L NC   V+     Y Y  A+ C C  C ++   CE
Sbjct:    78 EAYHRVCTYNETKQVTVKLPNCAPGVDP---FYTYPMAVRCDCGACSTATTECE 128

GO:0005576 "extracellular region" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

RGD|1359264 Gphb5 "glycoprotein hormone beta 5" [Rattus norvegicus (taxid:10116)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 30/114 (26%), Positives = 47/114 (41%)

Query:    12 LFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYK 71
             + S  + N    + C  R + +   +    G +   D    +CWGRC++ E      PY 
Sbjct:    21 VLSSSSGNLHTFVGCAVREFTFVAKKPGCRGLRITTD----ACWGRCETWEKPILEPPYI 76

Query:    72 RSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCE 125
              ++H VC +       V L NC   V+     Y Y  A+ C C  C ++   CE
Sbjct:    77 EAYHRVCTYNETRQVTVKLPNCAPGVDP---FYTYPMAVRCDCGACSTATTECE 127

GO:0002155 "regulation of thyroid hormone mediated signaling pathway" evidence=ISO

GO:0005179 "hormone activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|F6Y8D9 GPHB5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query:    53 SCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVE 98
             +CWGRC++ E      PY  +HH VC +       V L NC   V+
Sbjct:    59 ACWGRCETWEKPILEPPYIEAHHRVCTYNETRQVTVKLPNCAPGVD 104


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.133   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      138       138   0.00091  102 3  11 22  0.39    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  165 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.87u 0.08s 12.95t   Elapsed:  00:00:05
  Total cpu time:  12.87u 0.08s 12.95t   Elapsed:  00:00:05
  Start:  Thu Aug 15 11:06:11 2013   End:  Thu Aug 15 11:06:16 2013

GO:0005576 "extracellular region" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	138
cd00069	96	cd00069, GHB_like, Glycoprotein hormone beta chain	4e-24

>gnl|CDD|200450 cd00069, GHB_like, Glycoprotein hormone beta chain homologues

 Score = 88.9 bits (221), Expect = 4e-24
 Identities = 34/102 (33%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 26  CHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARAL 85
           CH R Y   V +    G      I    C GRCD+ +      PYK SH PVC +     
Sbjct: 1   CHPRNYTIAVEKE---GCGVCLAINTTICAGRCDTRDPVYKSPPYKPSHQPVCTYDEWRY 57

Query: 86  KVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGL 127
           + V L  C   V      Y Y  ALSC+C +C +    C  L
Sbjct: 58  ETVRLPGCPPGV---DPTYTYPVALSCRCGLCNTDTTDCTRL 96

This family of cystine-knot hormones includes the beta chains of gonadotropins, thyrotropins, follitropins, choriogonadotropins and more. The members are reproductive hormones that consist of two glycosylated chains (alpha and beta), which form a tightly bound dimer. Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
smart00068	107	GHB Glycoprotein hormone beta chain homologues. Al	100.0
cd00069	102	GHB Glycoprotein hormone beta chain homologues. Go	100.0
PF00007	105	Cys_knot: Cystine-knot domain; InterPro: IPR006208	99.95
PF03045	121	DAN: DAN domain; InterPro: IPR004133 This domain c	98.82
smart00041	82	CT C-terminal cystine knot-like domain (CTCK). The	98.12
PF05463	198	Sclerostin: Sclerostin (SOST); InterPro: IPR008835	96.85
PF00019	105	TGF_beta: Transforming growth factor beta like dom	82.72
PF00236	96	Hormone_6: Glycoprotein hormone; InterPro: IPR0004	81.88

>smart00068 GHB Glycoprotein hormone beta chain homologues

Probab=100.00  E-value=2e-43  Score=257.32  Aligned_cols=101  Identities=22%  Similarity=0.399  Sum_probs=98.1

Q ss_pred             cCCceeeeeeEEEEecCCCCCcceeeEEEeeeeeeeccCcCCCccCCCCCCCCCceecCceEEEEEEeCCCCCCccCCee
Q psy1559          23 TLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTE  102 (138)
Q Consensus        23 ~~~C~~~~~t~~vek~dC~~~~C~~~I~tt~C~G~C~T~e~p~~~~p~~~~~q~vCty~~~~y~tv~L~gC~~gvdp~~~  102 (138)
                      +++|+++|+||.|||+||+.+   +.||||||+|||+|+| |++++|+...+|+||||++|+|++++|||||+||||   
T Consensus         2 ~~~C~~~n~ti~vEk~~C~~c---~~i~TTiC~G~C~T~d-pv~~~~~~~~~Q~vCtY~d~~Y~tv~lpgCp~gvdp---   74 (107)
T smart00068        2 RPGCRPTNATIAVEKEECPVC---ITINTTICAGYCYTRD-PVYKSPLPPLPQRVCTYRELRYETVRLPGCPPGVDP---   74 (107)
T ss_pred             CCCceeEeEEEEEeeCCCCce---eEEEeEeECccccccC-ccccCCCCCcccCCccCCceEEEEEECCCccCCCCC---
Confidence            588999999999999999999   8999999999999995 999999999999999999999999999999999999   


Q ss_pred             eEEEeeeeceecCCCCCCCCccccccCC
Q psy1559         103 VYRYLEALSCKCSVCKSSEASCEGLRYS  130 (138)
Q Consensus       103 ~~tYpvA~SC~C~~C~~~~tdC~~~~~~  130 (138)
                      +|+||||+||+|++|++++|||+.++.+
T Consensus        75 ~~tYPVAlSC~C~~C~t~~tdC~~~~~~  102 (107)
T smart00068       75 VVTYPVALSCHCGKCNTDTTDCTVESLG  102 (107)
T ss_pred             cEEeeeecccCCCCcCCCCccccCcCCC
Confidence            9999999999999999999999998875

Also called gonadotropins. Glycoprotein hormones consist of two glycosylated chains (alpha and beta) of similar topology.

>cd00069 GHB Glycoprotein hormone beta chain homologues

Probab=100.00  E-value=8.9e-43  Score=252.09  Aligned_cols=98  Identities=22%  Similarity=0.437  Sum_probs=95.4

Q ss_pred             ceeeeeeEEEEecCCCCCcceeeEEEeeeeeeeccCcCCCccCCCCCCCCCceecCceEEEEEEeCCCCCCccCCeeeEE
Q psy1559          26 CHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYR  105 (138)
Q Consensus        26 C~~~~~t~~vek~dC~~~~C~~~I~tt~C~G~C~T~e~p~~~~p~~~~~q~vCty~~~~y~tv~L~gC~~gvdp~~~~~t  105 (138)
                      |+|+|+||.|||+||+.+   +.||||||+|||+|+| |++++|+...+|+||||++|+|++++|||||+||||   +|+
T Consensus         1 C~~~n~ti~vEk~~C~~c---~~i~TTiC~G~C~T~d-pv~~~~~~~~~Q~vCtY~~~~Y~tv~lpgCp~gvdp---~~t   73 (102)
T cd00069           1 CRPTNITIAVEKEECPVC---VTINTTICAGYCYTKD-PVYKSPLSPLPQRVCTYRELSYETVRLPGCPPGVDP---GVT   73 (102)
T ss_pred             CcceeEEEEEeeCCCCce---EEEEeeeEccCccccc-ccccccCCCcccCcccCCcEEEEEEECCCCcCCCCC---CEE
Confidence            899999999999999999   8999999999999996 999999999999999999999999999999999999   999


Q ss_pred             EeeeeceecCCCCCCCCccccccCC
Q psy1559         106 YLEALSCKCSVCKSSEASCEGLRYS  130 (138)
Q Consensus       106 YpvA~SC~C~~C~~~~tdC~~~~~~  130 (138)
                      ||||+||+|++|++++|||+.++.+
T Consensus        74 YPVAlsC~C~~C~t~~tdC~~~~~~   98 (102)
T cd00069          74 YPVALSCHCGKCNTDTTDCTVLSLG   98 (102)
T ss_pred             eeeecccccCCcCCCCccccccCCC
Confidence            9999999999999999999998765

Gonadotropins; reproductive hormones consisting of two glycosylated chains (alpha and beta) of similar topology with Cysteine-knot motifs.

>PF00007 Cys_knot: Cystine-knot domain; InterPro: IPR006208 This domain is found at the C-terminal of glycoprotein hormones and various extracellular proteins

Probab=99.95  E-value=7.9e-29  Score=178.06  Aligned_cols=100  Identities=26%  Similarity=0.499  Sum_probs=88.3

Q ss_pred             CCceeeeeeEEEEecCCCCCcceeeEEEeeeeeeeccCcCCCccCCCCCCCCCceecCceEEEEEEeCCCCCCccCCeee
Q psy1559          24 LDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEV  103 (138)
Q Consensus        24 ~~C~~~~~t~~vek~dC~~~~C~~~I~tt~C~G~C~T~e~p~~~~p~~~~~q~vCty~~~~y~tv~L~gC~~gvdp~~~~  103 (138)
                      ++|++++++++||++||..+   ..|++++|+|+|+|+| +.+.+|++..+|.+|++.++.++++.+++||+|+||   +
T Consensus         2 ~~C~~~~~ti~ve~~gC~s~---~~v~~~~C~G~C~s~~-~~~~~~~~~~~~~~Cc~~~~~~~~~v~~~C~~G~~~---~   74 (105)
T PF00007_consen    2 PGCHLTNVTIKVEKSGCRSC---KTVNTTYCSGYCESSE-PYSKDPRKFQSQCVCCYPERTYETVVLLGCPDGVDP---T   74 (105)
T ss_dssp             BBSEEEEEEEEEEECCCTEE---EEEEEEEEEEEEEEE---SCTTTTT----EEEEEEEEEEEEEEETTBTTCS-E---E
T ss_pred             CCCeEeeeEEEEEeCCCCCc---eEEEEEEEEEEecCCe-EecccCCcCcccCcCCCcceEEEEEECCCCccCCcc---e
Confidence            57999999999999999987   7999999999999998 999999999999999999999999999999999999   8


Q ss_pred             EEEeeeeceecCCCCCCCCccccccCC
Q psy1559         104 YRYLEALSCKCSVCKSSEASCEGLRYS  130 (138)
Q Consensus       104 ~tYpvA~SC~C~~C~~~~tdC~~~~~~  130 (138)
                      |+||+|+||+|+.|+++++||++++..
T Consensus        75 ~~y~~a~sC~C~~C~~~~t~c~~~~~~  101 (105)
T PF00007_consen   75 FTYPVATSCSCSNCNTDTTDCTRRSLS  101 (105)
T ss_dssp             EEEEEEEEEEEEEEETTTEEEESS-SS
T ss_pred             EEeeEeeeeeCCCCCCCcccccCccCC
Confidence            999999999999999999999988763

It is believed to be involved in disulphide-linked dimerisation. ; PDB: 1QFW_B 1HRP_B 1HCN_B 1XWD_B 1FL7_B.

>PF03045 DAN: DAN domain; InterPro: IPR004133 This domain contains 9 conserved cysteines and is extracellular

Probab=98.82  E-value=2.7e-08  Score=73.77  Aligned_cols=94  Identities=19%  Similarity=0.223  Sum_probs=77.4

Q ss_pred             cCCCcCCceeeeeeEEEEecCCCCCcceeeEEEeeeeeeeccCcCCCccCCCC----CCCCCceecCceEEEEEEeCCCC
Q psy1559          19 NQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYK----RSHHPVCQHGARALKVVILNNCE   94 (138)
Q Consensus        19 ~~~~~~~C~~~~~t~~vek~dC~~~~C~~~I~tt~C~G~C~T~e~p~~~~p~~----~~~q~vCty~~~~y~tv~L~gC~   94 (138)
                      .......|+.++++-.|..+||...    .|...+|.|+|.|+-+|.......    ...=..|...+++.++|+|. ||
T Consensus        23 ~~~~~~~Ck~~p~~Q~I~~~GC~s~----~I~N~~C~GqC~S~~iP~~~~~~~~~~~~~~C~~C~P~~~~~~~V~L~-C~   97 (121)
T PF03045_consen   23 QPLKRDWCKTVPFTQVISHPGCESV----TIQNNFCFGQCSSFYIPSSVPSDPGSQPFQSCSCCQPSRFRWVTVTLR-CP   97 (121)
T ss_pred             cccccCccEEEeeEEEECcCCceEE----EEEeeeeEEEcceEEeeCCcccccccccCcccCccCCCeeEEEEEEEE-Cc
Confidence            4566789999999999999999985    999999999999999888743222    23344599999999999996 99


Q ss_pred             CCccCCeeeEEEeeeeceecCCCC
Q psy1559          95 ENVEQGTEVYRYLEALSCKCSVCK  118 (138)
Q Consensus        95 ~gvdp~~~~~tYpvA~SC~C~~C~  118 (138)
                      .+..+. ++-.+..+.+|+|..|+
T Consensus        98 ~~~~~~-~~k~v~~v~~C~C~~~~  120 (121)
T PF03045_consen   98 GGSPPF-RVKRVQIVEECSCSSCS  120 (121)
T ss_pred             CCCCCc-ceEEEEEeeecccCccc
Confidence            987662 24678999999999986

Therefore the cysteines may form disulphide bridges. This family of proteins has been termed the DAN family [] after the first member to be reported. This family includes DAN, Cerberus and Gremlin. The gremlin protein is an antagonist of bone morphogenetic protein signalling. It is postulated that all members of this family antagonize different TGF beta TGF-beta ligands [].

>smart00041 CT C-terminal cystine knot-like domain (CTCK)

Probab=98.12  E-value=1.4e-05  Score=55.11  Aligned_cols=77  Identities=14%  Similarity=0.259  Sum_probs=60.8

Q ss_pred             eeeEEEEecCCCCCcceeeEEEeeeeeeeccCcCCCccCCCCCCCCCceecCceEEEEEEeCCCCCCccCCeeeEEEeee
Q psy1559          30 VYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEA  109 (138)
Q Consensus        30 ~~t~~vek~dC~~~~C~~~I~tt~C~G~C~T~e~p~~~~p~~~~~q~vCty~~~~y~tv~L~gC~~gvdp~~~~~tYpvA  109 (138)
                      .+...|+.+||...    .|..+.|.|.|.++-+++..-++  ..-..|...+++.+.|+|. ||+|..   ..+.|..+
T Consensus         3 ~~~q~i~~~gC~s~----~v~~~~C~G~C~s~~~~~~~~~~--~~c~CC~p~~~~~~~v~l~-C~dg~~---~~~~v~~i   72 (82)
T smart00041        3 PVRQTITYNGCTSV----TVKNAFCEGKCGSASSYSIQDVQ--HSCSCCQPHKTKTRQVRLR-CPDGST---VKKTVMHI   72 (82)
T ss_pred             ceEEEEEeCCceEe----EEEcCcEEeECCCeeEcCccccc--cCCCccCCceeEEEEEEEE-CCCCCE---EEEEEEEE
Confidence            34567778889886    49999999999988766552222  1246899999999999995 998853   47899999


Q ss_pred             eceecCC
Q psy1559         110 LSCKCSV  116 (138)
Q Consensus       110 ~SC~C~~  116 (138)
                      .+|.|..
T Consensus        73 ~~C~C~~   79 (82)
T smart00041       73 EECGCEP   79 (82)
T ss_pred             Eeccccc
Confidence            9999976

The structures of transforming growth factor-beta (TGFbeta), nerve growth factor (NGF), platelet-derived growth factor (PDGF) and gonadotropin all form 2 highly twisted antiparallel pairs of beta-strands and contain three disulphide bonds. The domain is non-globular and little is conserved among these presumed homologues except for their cysteine residues. CT domains are predicted to form homodimers.

>PF05463 Sclerostin: Sclerostin (SOST); InterPro: IPR008835 This family contains several mammalian sclerostin (SOST) proteins

Probab=96.85  E-value=0.0054  Score=49.27  Aligned_cols=89  Identities=20%  Similarity=0.365  Sum_probs=54.5

Q ss_pred             CCcCCceeeeeeEEEEecCCCCCcceeeEEEeeeeeeeccCcC-CCccCCCC-CCCCCc----eecCceEEEEEEeCCCC
Q psy1559          21 DITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNET-SDWRFPYK-RSHHPV----CQHGARALKVVILNNCE   94 (138)
Q Consensus        21 ~~~~~C~~~~~t~~vek~dC~~~~C~~~I~tt~C~G~C~T~e~-p~~~~p~~-~~~q~v----Cty~~~~y~tv~L~gC~   94 (138)
                      ....+|.--.+|.+|..--|...   -.|.--.|+|.|..... |.|..--+ ++.+.+    |..+..+.+.|+|. ||
T Consensus        63 ~~~~~CrELrstrYisdG~C~S~---kPikelvCsGqClP~~llPn~Ig~~k~W~R~~~~e~RCv~d~~RtqrVqL~-C~  138 (198)
T PF05463_consen   63 ASQVGCRELRSTRYISDGQCRSA---KPIKELVCSGQCLPAHLLPNWIGRGKYWWRRSAQEWRCVPDHTRTQRVQLQ-CP  138 (198)
T ss_dssp             TTTTSS-CEEEEE--EETTEEES---S-EEEEEE----S-----TTSTTSSS-SSSSS------EEEEEEEEEEEEE--T
T ss_pred             cccCccceeeeeeeeecCccccc---CchhhheeeccccccccCcccccccceecccCCCcccccCCcceeEEEEEE-CC
Confidence            34678998899999988666554   58999999999986653 65554333 344333    99899999999996 99


Q ss_pred             CCccCCeeeEEEeeeeceecCC
Q psy1559          95 ENVEQGTEVYRYLEALSCKCSV  116 (138)
Q Consensus        95 ~gvdp~~~~~tYpvA~SC~C~~  116 (138)
                      +|.-   ++|-+-|.+||+|..
T Consensus       139 dG~t---RTyKI~vVtSCKCKR  157 (198)
T PF05463_consen  139 DGTT---RTYKIRVVTSCKCKR  157 (198)
T ss_dssp             TTSS---EEEEEEEEEEEE---
T ss_pred             CCCe---eEEEEEEEEEeeecc
Confidence            9954   589999999999975

SOST is thought to suppress bone formation. Mutations of the SOST gene lead to sclerosteosis, a progressive sclerosing bone dysplasia with an autosomal recessive mode of inheritance. Radiologically, it is characterised by a generalised hyperostosis and sclerosis leading to a markedly thickened and sclerotic skull, with mandible, ribs, clavicles and all long bones also being affected. Due to narrowing of the foramina of the cranial nerves, facial nerve palsy, hearing loss and atrophy of the optic nerves can occur. Sclerosteosis is clinically and radiologically very similar to van Buchem disease, mainly differentiated by hand malformations and a large stature in sclerosteosis patients [].; GO: 0005615 extracellular space; PDB: 2KD3_A 3SOV_Z 2K8P_A.

>PF00019 TGF_beta: Transforming growth factor beta like domain; InterPro: IPR001839 Transforming growth factor-beta (TGF-beta) is a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types

Probab=82.72  E-value=2.2  Score=30.04  Aligned_cols=84  Identities=15%  Similarity=0.286  Sum_probs=50.2

Q ss_pred             CceeeeeeEEEEecCCCCCcce----eeEEEeeeeeeeccCcCCCccCC-------------CCCCCCCceecCceEEEE
Q psy1559          25 DCHRRVYKYRVSQTDSLGRKCW----DDIEVLSCWGRCDSNETSDWRFP-------------YKRSHHPVCQHGARALKV   87 (138)
Q Consensus        25 ~C~~~~~t~~vek~dC~~~~C~----~~I~tt~C~G~C~T~e~p~~~~p-------------~~~~~q~vCty~~~~y~t   87 (138)
                      .|.++...+..+.-+=+.   |    ..++...|.|.|...-.....++             -....++.|...+.+..+
T Consensus         3 ~Cc~~~~~v~F~~lGw~~---wIi~P~~~~~~~C~G~C~~~~~~~~~~~~ha~~~~~~~~~~~~~~~~pCC~P~~~~~l~   79 (105)
T PF00019_consen    3 RCCRRSLYVNFKDLGWDD---WIIAPEGYNANYCSGSCPFPLSNHNNHSNHAILQSLMHSLNPRSVPQPCCVPTKYSPLS   79 (105)
T ss_dssp             BSEEEEEEEECTCTTSTT---TEEESSEEEEEEEESBSCSSSSCGCHHHHHHHHHHHHHHHSTTTSTS-EEEEEEEEEEE
T ss_pred             cceeEEEEEEhhhcCCce---eEeccCccccccccceecccccccccccccccccccccccccccccCCcEeeeeeceEE
Confidence            477777666554322110   1    17899999999996532211111             135678999988877777


Q ss_pred             EEeCCCCCCccCCeeeEEEe--eeeceecC
Q psy1559          88 VILNNCEENVEQGTEVYRYL--EALSCKCS  115 (138)
Q Consensus        88 v~L~gC~~gvdp~~~~~tYp--vA~SC~C~  115 (138)
                      +..-+  +  +..++.-+||  +|++|.|+
T Consensus        80 il~~~--~--~~~i~~~~~~~m~v~~CgC~  105 (105)
T PF00019_consen   80 ILYLD--E--DGNIVLKTLPNMIVKECGCS  105 (105)
T ss_dssp             EEEEE--T--TSEEEEEEEEEEEEEEEEEE
T ss_pred             EEEEE--C--CCcEEEEEeCCEEecccccC
Confidence            74331  1  2223456777  99999984

TGF-beta-1 is a peptide of 112 amino acid residues derived by proteolytic cleavage from the C-terminal of a precursor protein []. A number of proteins are known to be related to TGF-beta-1 [, ]. Proteins from the TGF-beta family are only active as homo- or heterodimer; the two chains being linked by a single disulphide bond. From X-ray studies of TGF-beta-2 [], it is known that all the other cysteines are involved in intrachain disulphide bonds. There are four disulphide bonds in the TGF-beta's and in inhibin beta chains, while the other members of this family lack the first bond. The regulatory cytokine TGFbeta exerts tumour-suppressive effects, but also modulates cell invasion and immune regulation []. Misregulation of the TGF-beta signalling pathway can result in tumour development. ; GO: 0008083 growth factor activity; PDB: 2QCQ_B 2QCW_B 2R53_A 2R52_A 1M4U_L 1BMP_A 1LX5_A 1LXI_A 3FUB_B 2V5E_B ....

>PF00236 Hormone_6: Glycoprotein hormone; InterPro: IPR000476 Glycoprotein hormones [, ] (or gonadotropins) are a family of proteins, which include the mammalian hormones follitropin (FSH), lutropin (LSH), thyrotropin (TSH) placental chorionic gonadotropins hCG and eCG [] and chorionic gonadotropin (CG), as well as at least two forms of fish gonadotropins

Probab=81.88  E-value=0.51  Score=34.00  Aligned_cols=56  Identities=23%  Similarity=0.408  Sum_probs=36.7

Q ss_pred             EeeeeeeeccCcCCCcc-------CC-CCCCCCCceecCceEEEEEEeCCCCCCccCCeeeEEEeeeeceecCCCC
Q psy1559          51 VLSCWGRCDSNETSDWR-------FP-YKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCK  118 (138)
Q Consensus        51 tt~C~G~C~T~e~p~~~-------~p-~~~~~q~vCty~~~~y~tv~L~gC~~gvdp~~~~~tYpvA~SC~C~~C~  118 (138)
                      +-.|.|.|+|++.|.-.       .| .++|.-..|+.+.+...++  .|   +       ...-.-+.|+|+.|-
T Consensus        29 iyQC~GCCFSrAYPTP~rskktM~vpKNITSEAtCCVAk~~~~v~v--~~---~-------~~v~NHTeChCsTCy   92 (96)
T PF00236_consen   29 IYQCMGCCFSRAYPTPLRSKKTMLVPKNITSEATCCVAKSSTRVTV--MG---N-------IKVENHTECHCSTCY   92 (96)
T ss_dssp             EEEEEEEEEEEEEE-SHHHHTSSSSSSSEEEEEEEEEEEEEEEEEE--TT---T-------EEEEEEEEEEEEESS
T ss_pred             eeEeeeeeeccccCCchhhhhhccCCccccceeeEEEeeeeeEEEE--ec---c-------eEEeeccccccCcee
Confidence            68899999999976522       12 3456667799776665444  21   1       234566799999996

These hormones are central to the complex endocrine system that regulates normal growth, sexual development, and reproductive function []. The hormones LH, FSH and TSH are secreted by the anterior pituitary gland, while hCG and eCG are secreted by the placenta []. All these hormones consist of two glycosylated chains (alpha and beta). The alpha subunit is common to each protein dimer (well conserved within species, but differing between them []), and a unique beta subunit, which confers biological specificity []. The alpha chains are highly conserved proteins of about 100 amino acid residues which contain ten conserved cysteines all involved in disulphide bonds [], as shown in the following schematic representation. +---------------------------+ +----------+| +-------------|--+ | || | | | xxxxCxCxxxxxxCxCCxxxxxxxxxxxxxCCxxxxxxxxxxCxCxxCx | | | | +------|-----------------+ | | | +----------------------------+ 'C': conserved cysteine involved in a disulphide bond. Intracellular levels of free alpha subunits are greater than those of the mature glycoprotein, implying that hormone assembly is limited by the appearance of the specific beta subunits, and hence that synthesis of alpha and beta is independently regulated [].; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1HD4_A 1QFW_A 1XWD_D 1DZ7_A 1HCN_A 1E9J_A 1HRP_A 1FL7_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	138
1hcn_B	145	Human chorionic gonadotropin; hormone; HET: NAG; 2	5e-10
4ay9_B	111	Follitropin subunit beta; hormone-receptor complex	1e-09

>1hcn_B Human chorionic gonadotropin; hormone; HET: NAG; 2.60A {Homo sapiens} SCOP: g.17.1.4 PDB: 1hrp_B* 1qfw_B* Length = 145

 Score = 53.1 bits (127), Expect = 5e-10
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 49  IEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 108
           +    C G C +      +         VC +     + + L  C   V     V  Y  
Sbjct: 29  VNTTICAGYCPTMT-RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVN---PVVSYAV 84

Query: 109 ALSCKCSVCKSSEASCEGLR 128
           ALSC+C++C+ S   C G +
Sbjct: 85  ALSCQCALCRRSTTDCGGPK 104

>4ay9_B Follitropin subunit beta; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_B* 1fl7_B* Length = 111

 Score = 51.5 bits (123), Expect = 1e-09
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 4/80 (5%)

Query: 49  IEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 108
           I    C G C + +   ++ P +      C       + V +  C  + +    +Y Y  
Sbjct: 23  INTTWCAGYCYTRD-LVYKDPARPKIQKTCTFKELVYETVRVPGCAHHAD---SLYTYPV 78

Query: 109 ALSCKCSVCKSSEASCEGLR 128
           A  C C  C S    C    
Sbjct: 79  ATQCHCGKCDSDSTDCTVRG 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
4ay9_B	111	Follitropin subunit beta; hormone-receptor complex	100.0
1hcn_B	145	Human chorionic gonadotropin; hormone; HET: NAG; 2	100.0
2k8p_A	189	Sclerostin; WNT signalling pathway, bone formation	96.13
4ay9_A	92	Glycoprotein hormones, alpha polypeptide; hormone-	87.3

>4ay9_B Follitropin subunit beta; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_B* 1fl7_B*

Probab=100.00  E-value=8.1e-43  Score=254.64  Aligned_cols=99  Identities=17%  Similarity=0.378  Sum_probs=95.9

Q ss_pred             CCceeeeeeEEEEecCCCCCcceeeEEEeeeeeeeccCcCCCccCCCCCCCCCceecCceEEEEEEeCCCCCCccCCeee
Q psy1559          24 LDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEV  103 (138)
Q Consensus        24 ~~C~~~~~t~~vek~dC~~~~C~~~I~tt~C~G~C~T~e~p~~~~p~~~~~q~vCty~~~~y~tv~L~gC~~gvdp~~~~  103 (138)
                      .+|+|+|+||.|||+||+.+   +.||||||||||+|+| |+|++|+++++|+||||++++|++++|||||+||||   +
T Consensus         1 ~~C~~~n~ti~vEk~~C~~c---~~i~TtiC~G~C~T~d-~v~~~p~~~~~Q~VCty~~~~y~tv~LpgC~pgVdP---~   73 (111)
T 4ay9_B            1 NSCELTNITIAIEKEECRFC---ISINTTWCAGYCYTRD-LVYKDPARPKIQKTCTFKELVYETVRVPGCAHHADS---L   73 (111)
T ss_dssp             CCEEEEEEEEEEEEGGGTEE---EEEEEEEEEEEEEEEC-CSSCCTTCCCCCCEEEEEEEEEEEEEECCCTTSCCE---E
T ss_pred             CCcceEeEEEEEEcCCCCcc---cEEEEeeEccCcccCC-ccccCcCCCccCCCcccCCEEEEEEECCCccCCCCC---C
Confidence            47999999999999999998   8999999999999998 999999999999999999999999999999999999   9


Q ss_pred             EEEeeeeceecCCCCCCCCccccccC
Q psy1559         104 YRYLEALSCKCSVCKSSEASCEGLRY  129 (138)
Q Consensus       104 ~tYpvA~SC~C~~C~~~~tdC~~~~~  129 (138)
                      |+||||+||+|++|++++|||+..+.
T Consensus        74 ~tYPVA~sC~C~~C~t~~TdCt~~~~   99 (111)
T 4ay9_B           74 YTYPVATQCHCGKCDSDSTDCTVRGL   99 (111)
T ss_dssp             EEEEEEEEEEEECBCTTTEEEESCCS
T ss_pred             EEeeecccccCCCcCCCCccccccCC
Confidence            99999999999999999999997765

>1hcn_B Human chorionic gonadotropin; hormone; HET: NAG; 2.60A {Homo sapiens} SCOP: g.17.1.4 PDB: 1hrp_B* 1qfw_B*

Probab=100.00  E-value=4.2e-41  Score=255.32  Aligned_cols=104  Identities=20%  Similarity=0.368  Sum_probs=100.2

Q ss_pred             CCCcCCceeeeeeEEEEecCCCCCcceeeEEEeeeeeeeccCcCCCccCCCCCCCCCceecCceEEEEEEeCCCCCCccC
Q psy1559          20 QDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQ   99 (138)
Q Consensus        20 ~~~~~~C~~~~~t~~vek~dC~~~~C~~~I~tt~C~G~C~T~e~p~~~~p~~~~~q~vCty~~~~y~tv~L~gC~~gvdp   99 (138)
                      +..+++||++|+||+|||+||+++   +.||||||+|||+|+| |+|++|+...+|+||||++|+|++|+||||++||||
T Consensus         3 ~~~~~~C~l~n~Ti~vEke~C~~c---~~InTtiC~GyC~T~d-pv~~~p~~~~~Q~vCTy~e~~y~tv~LpgC~~gvdp   78 (145)
T 1hcn_B            3 EPLRPRCRPINATLAVEKEGCPVC---ITVNTTICAGYCPTMT-RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNP   78 (145)
T ss_dssp             CCSSBBSEEEEEEEEECCTTCSCC---EEEEEEEEEEEEEECC-CCBTTCSSCCCCEEEEEEEEEEEEEECTTCCSSCCC
T ss_pred             CcccCCCeEeeeEEEEeeCCCCce---EEEEeeeEcCEeecCC-CCCcCCCCCccCCCcccCCEEEEEEEcCCCcCCCCc
Confidence            457899999999999999999999   8999999999999998 999999999999999999999999999999999999


Q ss_pred             CeeeEEEeeeeceecCCCCCCCCccccccCC
Q psy1559         100 GTEVYRYLEALSCKCSVCKSSEASCEGLRYS  130 (138)
Q Consensus       100 ~~~~~tYpvA~SC~C~~C~~~~tdC~~~~~~  130 (138)
                         +|+||||+||+|++|++++|||++++..
T Consensus        79 ---~~tYPVA~SC~C~~C~~~~tdC~~~~~~  106 (145)
T 1hcn_B           79 ---VVSYAVALSCQCALCRRSTTDCGGPKDH  106 (145)
T ss_dssp             ---EEEEEEEEEEEEEECCTTTEEEECCCSC
T ss_pred             ---cEEecccccccCCCCCCCCccccCcCCC
Confidence               9999999999999999999999998864

>2k8p_A Sclerostin; WNT signalling pathway, bone formation, alternative splicing, glycoprotein, secreted, signaling protein; NMR {Homo sapiens} PDB: 2kd3_A

Probab=96.13  E-value=0.031  Score=43.56  Aligned_cols=88  Identities=17%  Similarity=0.270  Sum_probs=66.7

Q ss_pred             CcCCceeeeeeEEEEecCCCCCcceeeEEEeeeeeeeccCc-CCCccCC---CCCC-CCCceecCceEEEEEEeCCCCCC
Q psy1559          22 ITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNE-TSDWRFP---YKRS-HHPVCQHGARALKVVILNNCEEN   96 (138)
Q Consensus        22 ~~~~C~~~~~t~~vek~dC~~~~C~~~I~tt~C~G~C~T~e-~p~~~~p---~~~~-~q~vCty~~~~y~tv~L~gC~~g   96 (138)
                      ...+|+-..++-++...+|...   ..|.-..|+|.|.... .|.|.--   +..+ ....|+-...+.+.++|. |++|
T Consensus        52 ~~~~Crg~r~r~Yisdg~CrS~---kpVk~lvCsG~C~p~~~lpn~i~~~K~wr~s~~~~cCvp~rsRrrRIqm~-C~DG  127 (189)
T 2k8p_A           52 SEYSCRELHFTRYVTDGPCRSA---KPVTELVCSGQCGPARLLPNAIGRGKWWRPSGPDFRCIPDRYRAQRVQLL-CPGG  127 (189)
T ss_dssp             CCSSSCEEEEEECCCCSSCEES---SCEEEEEECCCCCCCCCCSSCCCSSCCCSCCCCCCCCEECCEEEEEEEEE-CCTT
T ss_pred             cccccccceeeEEEecCceeEc---cccccceEeccccCccccccccccccccccCCCcccccCCceeeEEEEEE-cCCC
Confidence            3578999999999988787776   7999999999997432 2333210   1112 256899999999999996 9999


Q ss_pred             ccCCeeeEEEeeeeceecC
Q psy1559          97 VEQGTEVYRYLEALSCKCS  115 (138)
Q Consensus        97 vdp~~~~~tYpvA~SC~C~  115 (138)
                      .-|  .+|.+-+-++|.|.
T Consensus       128 tt~--rt~ki~vV~sCkCk  144 (189)
T 2k8p_A          128 EAP--RARKVRLVASCKCK  144 (189)
T ss_dssp             SCC--EEEEEEEECCEECC
T ss_pred             Cee--eEEEEEEEEeeccc
Confidence            775  35667788999998

>4ay9_A Glycoprotein hormones, alpha polypeptide; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1dz7_A 1e9j_A* 1fl7_A* 1hcn_A* 1hd4_A* 1xwd_A* 1hrp_A* 1qfw_A*

Probab=87.30  E-value=0.35  Score=33.53  Aligned_cols=57  Identities=21%  Similarity=0.398  Sum_probs=40.8

Q ss_pred             EeeeeeeeccCcCCCcc-------CC-CCCCCCCceecCceEEEEEEeCCCCCCccCCeeeEEEeeeeceecCCCCC
Q psy1559          51 VLSCWGRCDSNETSDWR-------FP-YKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKS  119 (138)
Q Consensus        51 tt~C~G~C~T~e~p~~~-------~p-~~~~~q~vCty~~~~y~tv~L~gC~~gvdp~~~~~tYpvA~SC~C~~C~~  119 (138)
                      +--|.|.|+|++.|.-.       .| .+++.-..|.-+.+.++++.     .+       +..-.-..|+|+.|--
T Consensus        25 iyQC~GCCFSrAYPTPlrskktM~vPKNITSEAtCCVAk~~~~vt~~-----~~-------~~v~NHT~ChCsTCyy   89 (92)
T 4ay9_A           25 ILQCMGCCFSRAYPTPLRSKKTMLVQKNVTSESTCCVAKSYNRVTVM-----GG-------FKVENHTACHCSTCYY   89 (92)
T ss_dssp             CEEEEEEEEEEEEECCHHHHTTCSSCCSEEEECCEEEEEEEEEEEET-----TT-------EEEEEEEEEEEECCSS
T ss_pred             eEEecceeeccccCCccchhhcccCCccccCceeEEEeecceeEEEe-----cC-------eEEeecccccccceeE
Confidence            46799999999966521       12 45677888998877777662     12       4567888999999953

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	138
d1xwdb1	105	g.17.1.4 (B:3-107) Follicle stimulating hormone, f	3e-16
d1hcnb_	110	g.17.1.4 (B:) Gonadotropin B chain {Human (Homo sa	4e-16

>d1xwdb1 g.17.1.4 (B:3-107) Follicle stimulating hormone, follitropin, beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Gonadodropin/Follitropin
domain: Follicle stimulating hormone, follitropin, beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (164), Expect = 3e-16
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 49  IEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 108
           I    C G C + +   ++ P +      C       + V +  C  + +    +Y Y  
Sbjct: 21  INTTWCAGYCYTRDLV-YKDPARPKIQKTCTFKELVYETVRVPGCAHHAD---SLYTYPV 76

Query: 109 ALSCKCSVCKSSEASCE 125
           A  C C  C S    C 
Sbjct: 77  ATQCHCGKCDSDSTDCT 93

>d1hcnb_ g.17.1.4 (B:) Gonadotropin B chain {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Gonadodropin/Follitropin
domain: Gonadotropin B chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (164), Expect = 4e-16
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 49  IEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 108
           +    C G C +      +         VC +     + + L  C   V     V  Y  
Sbjct: 28  VNTTICAGYCPTMT-RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVN---PVVSYAV 83

Query: 109 ALSCKCSVCKSSEASCEGLR 128
           ALSC+C++C+ S   C G +
Sbjct: 84  ALSCQCALCRRSTTDCGGPK 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	138
d1hcnb_	110	Gonadotropin B chain {Human (Homo sapiens) [TaxId:	100.0
d1xwdb1	105	Follicle stimulating hormone, follitropin, beta ch	100.0

>d1hcnb_ g.17.1.4 (B:) Gonadotropin B chain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Gonadodropin/Follitropin
domain: Gonadotropin B chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-44  Score=260.45  Aligned_cols=103  Identities=20%  Similarity=0.366  Sum_probs=99.7

Q ss_pred             CCcCCceeeeeeEEEEecCCCCCcceeeEEEeeeeeeeccCcCCCccCCCCCCCCCceecCceEEEEEEeCCCCCCccCC
Q psy1559          21 DITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQG  100 (138)
Q Consensus        21 ~~~~~C~~~~~t~~vek~dC~~~~C~~~I~tt~C~G~C~T~e~p~~~~p~~~~~q~vCty~~~~y~tv~L~gC~~gvdp~  100 (138)
                      -.++.|+|+|+||.|||+||+++   +.||||||||||+|+| |+|++|++.++|+||||++|+|++++|||||+|||| 
T Consensus         3 p~~~~C~~~n~ti~vEke~C~~c---~~i~TTiC~G~C~T~d-pv~~~~~~~~~Q~vCty~~~~y~tv~LpgCp~gVdP-   77 (110)
T d1hcnb_           3 PLRPRCRPINATLAVEKEGCPVC---ITVNTTICAGYCPTMT-RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNP-   77 (110)
T ss_dssp             CSSBBSEEEEEEEEECCTTCSCC---EEEEEEEEEEEEEECC-CCBTTCSSCCCCEEEEEEEEEEEEEECTTCCSSCCC-
T ss_pred             CccCCccceeeEEEEEecCCCcE---EEEEeEeEccEecccC-ccccCcCCCccCCccccCCeEEEEEECCCCCCCCCC-
Confidence            35789999999999999999999   9999999999999998 999999999999999999999999999999999999 


Q ss_pred             eeeEEEeeeeceecCCCCCCCCccccccCC
Q psy1559         101 TEVYRYLEALSCKCSVCKSSEASCEGLRYS  130 (138)
Q Consensus       101 ~~~~tYpvA~SC~C~~C~~~~tdC~~~~~~  130 (138)
                        +|+||||+||+|++|++++|||++++.+
T Consensus        78 --~~tYPVAlsC~C~~C~t~~tdC~~~~~~  105 (110)
T d1hcnb_          78 --VVSYAVALSCQCALCRRSTTDCGGPKDH  105 (110)
T ss_dssp             --EEEEEEEEEEEEEECCTTTEEEECCCSC
T ss_pred             --cEEeeeccccccCccCCCCccccCcCCC
Confidence              9999999999999999999999998875

>d1xwdb1 g.17.1.4 (B:3-107) Follicle stimulating hormone, follitropin, beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Gonadodropin/Follitropin
domain: Follicle stimulating hormone, follitropin, beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-43  Score=254.00  Aligned_cols=98  Identities=17%  Similarity=0.392  Sum_probs=95.0

Q ss_pred             ceeeeeeEEEEecCCCCCcceeeEEEeeeeeeeccCcCCCccCCCCCCCCCceecCceEEEEEEeCCCCCCccCCeeeEE
Q psy1559          26 CHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYR  105 (138)
Q Consensus        26 C~~~~~t~~vek~dC~~~~C~~~I~tt~C~G~C~T~e~p~~~~p~~~~~q~vCty~~~~y~tv~L~gC~~gvdp~~~~~t  105 (138)
                      |+|+|+||.|||+||+++   ++||||||||||+|+| |+|++|++.++|+||||++|+|++++|||||+||||   +|+
T Consensus         1 C~~~n~ti~vEk~~C~~c---~~i~TTiC~G~C~t~d-pv~~~p~~~~~Q~vCty~~~~y~tv~LpgCp~gVdP---~~t   73 (105)
T d1xwdb1           1 CELTNITIAIEKEECRFC---ISINTTWCAGYCYTRD-LVYKDPARPKIQKTCTFKELVYETVRVPGCAHHADS---LYT   73 (105)
T ss_dssp             CEEEEEEEEEEETTTTEE---EEEEEEEEEEEEEEEC-CSSCCTTSCCCCCEEEEEEEEEEEEEECCBTTBCCE---EEE
T ss_pred             CCcEeEEEEeecCCCCce---EEEEeEeECcCCCccC-ccccCcCCCcCCCccccCCEEEEEEECCCccCCCCC---cEE
Confidence            899999999999999999   8999999999999997 999999999999999999999999999999999999   999


Q ss_pred             EeeeeceecCCCCCCCCccccccCC
Q psy1559         106 YLEALSCKCSVCKSSEASCEGLRYS  130 (138)
Q Consensus       106 YpvA~SC~C~~C~~~~tdC~~~~~~  130 (138)
                      ||||+||+|++|++++|||+.++..
T Consensus        74 YPVA~sC~C~~C~t~~tdC~~~~~~   98 (105)
T d1xwdb1          74 YPVATQCHCGKCDSDSTDCTVRGLG   98 (105)
T ss_dssp             EEEEEEEEEECBCTTTEEEESCCSC
T ss_pred             eeeccccccCCcCCCCccceeccCC
Confidence            9999999999999999999987653