Psyllid ID: psy1560

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MFTLGPSYLLTYCKDCKKEEEEEEEEACYDTGHKRLIMLQSTIGFTLLLFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSYNSLNMI
Secondary Structure (PSIPRED)
cccccccHHHHHcHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEEEccccccEEEEEEEEcEEEEccccccccccccccccccccccccccEEEEEEEcccccccccccccEEEEEEEEcEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHcHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEEEccccccEccccEEEEcccccccccccccccccccEccccEEEEccEEEEEEEEccccccccccccEEEEEEEEEEccccccccccccccEEEccccEEccc
Coil and Loop (DISEMBL)
mftlgpsylLTYCKDCKKEEEEEEEEACYDTGHKRLIMLQSTIGFTLLLFSYCaanqditldCHRRVYKYRVSqtdslgrkcwddievlscwgrcdsnetsdwrfpykrshhpvcqhGARALKVVILNNCEENVEQGTEVYRYLEALSckcsvcksseasceglryssynslnmi
Flexible Loop (DISEMBL)
mftlgpsylltYCKDCKKEEEEEEEEACYDTGHKRLIMLQSTIGFTLLLFSYCAANQDITLDCHRRVYKYRvsqtdslgrkcWDDIEVLSCWGRCDsnetsdwrfpykrSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCksseasceglryssynslnmi
Low Complexity Region (SEG)
MFTLGPSYLLTYCKDCKKeeeeeeeeACYDTGHKRLIMLQSTIGFTLLLFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSYNSLNMI
Disordered region (IsUnstruct)
****************************YDTGHKRLIMLQSTIGFTLLLFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSE**C**************
Disordered Region (DISOPRED)
***LGPSYLLTYC*****************TGHKRLIMLQSTIGFTLLLFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSS*NSLNMI
Disordered Region (DISEMBL)
MFTLGPSYLLTYCKDC*************DTGHKRLIMLQSTIGFTLLLFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSYNSLNMI
Disordered Region (DISPRO)
*FTLGPSYLLTYCKDCKKEEEEEEEEACYDTGHKRLIMLQSTIGFTLLLFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSYNSLNMI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFTLGPSYLLTYCKDCKKEEEEEEEEACYDTGHKRLIMLQSTIGFTLLLFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSYNSLNMI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
Q86YW7	130	Glycoprotein hormone beta	yes	N/A	0.582	0.784	0.275	1e-06
Q812B2	130	Glycoprotein hormone beta	yes	N/A	0.622	0.838	0.258	7e-06

>sp|Q86YW7|GPHB5_HUMAN Glycoprotein hormone beta-5 OS=Homo sapiens GN=GPHB5 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 54  AANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHP 113
           + N    + C  R + +   +    G +   D    +CWGRC++ E      PY  +HH 
Sbjct: 27  SGNLRTFVGCAVREFTFLAKKPGCRGLRITTD----ACWGRCETWEKPILEPPYIEAHHR 82

Query: 114 VCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCE 162
           VC +       V L NC   V+     Y Y  A+ C C  C ++   CE
Sbjct: 83  VCTYNETKQVTVKLPNCAPGVDP---FYTYPVAIRCDCGACSTATTECE 128

Stimulates the thyroid. Binds and activates THSR, leading to increased cAMP production.
Homo sapiens (taxid: 9606)

>sp|Q812B2|GPHB5_MOUSE Glycoprotein hormone beta-5 OS=Mus musculus GN=Gphb5 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 49  LFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYK 108
           + S  + N    + C  R + +   +    G +   D    +CWGRC++ E      PY 
Sbjct: 22  VLSSSSGNLHTFVGCAVREFTFMAKKPGCRGLRITTD----ACWGRCETWEKPILEPPYI 77

Query: 109 RSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGL 164
            ++H VC +       V L NC   V+     Y Y  A+ C C  C ++   CE +
Sbjct: 78  EAYHRVCTYNETRQVTVKLPNCAPGVDP---FYTYPMAVRCDCGACSTATTECETI 130

Stimulates the thyroid. Binds and activates THSR, leading to increased cAMP production.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
255759839	157	TPA: putative glycoprotein hormone-beta5	0.645	0.719	0.672	2e-41
242014276	124	glycoprotein hormone beta-5 precursor, p	0.622	0.879	0.688	1e-40
350534624	141	uncharacterized protein LOC100168739 pre	0.622	0.773	0.596	6e-34
255759843	155	TPA: putative glycoprotein hormone-beta5	0.64	0.722	0.589	8e-34
158296827	171	AGAP008302-PA [Anopheles gambiae str. PE	0.828	0.847	0.473	2e-33
270014312	202	glycoprotein hormone beta 5 [Tribolium c	0.6	0.519	0.590	2e-32
170054821	164	glycoprotein hormone beta subunit [Culex	0.657	0.701	0.530	2e-31
189241093	148	PREDICTED: similar to AGAP008302-PA [Tri	0.622	0.736	0.563	4e-31
157119437	162	hypothetical protein AaeL_AAEL001474 [Ae	0.788	0.851	0.45	2e-30
66772453	170	IP08744p [Drosophila melanogaster]	0.588	0.605	0.553	1e-29

>gi|255759839|tpe|CAR95343.1| TPA: putative glycoprotein hormone-beta5 [Pediculus humanus corporis]

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 95/113 (84%)

Query: 54  AANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHP 113
           + N D +LDC+RR Y +RV+QTDS GR CWD I V+SCWGRCDSNE SDWRFPYKRSHHP
Sbjct: 31  STNMDSSLDCNRRAYSHRVTQTDSEGRICWDTITVVSCWGRCDSNEISDWRFPYKRSHHP 90

Query: 114 VCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRY 166
           VC HG R  K VIL+NC+ +VE GTE++ ++EA+SC+CS+CKSSEA+C+G+RY
Sbjct: 91  VCIHGERKPKTVILSNCDNDVEPGTEIHEFMEAISCECSLCKSSEANCQGVRY 143

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014276|ref|XP_002427817.1| glycoprotein hormone beta-5 precursor, putative [Pediculus humanus corporis] gi|212512286|gb|EEB15079.1| glycoprotein hormone beta-5 precursor, putative [Pediculus humanus corporis]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 93/109 (85%)

Query: 58  DITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQH 117
           D +LDC+RR Y +RV+QTDS GR CWD I V+SCWGRCDSNE SDWRFPYKRSHHPVC H
Sbjct: 2   DSSLDCNRRAYSHRVTQTDSEGRICWDTITVVSCWGRCDSNEISDWRFPYKRSHHPVCIH 61

Query: 118 GARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRY 166
           G R  K VIL+NC+ +VE GTE++ ++EA+SC+CS+CKSSEA+C+G+RY
Sbjct: 62  GERKPKTVILSNCDNDVEPGTEIHEFMEAISCECSLCKSSEANCQGVRY 110

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350534624|ref|NP_001232960.1| uncharacterized protein LOC100168739 precursor [Acyrthosiphon pisum] gi|257900429|tpe|CAR95344.2| TPA: putative glycoprotein hormone-beta5 [Acyrthosiphon pisum]

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 65/109 (59%), Positives = 82/109 (75%)

Query: 61  LDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGAR 120
           LDC+R++  ++VS TD  GR C D+I+V+SCWGRCDSNE SDWRFP+KRSHHPVC H  +
Sbjct: 25  LDCNRQLSTFQVSNTDENGRTCSDEIDVMSCWGRCDSNEVSDWRFPFKRSHHPVCIHDGQ 84

Query: 121 ALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSY 169
            L   +L NCEE V+ GTE Y + +A+SCKC  CKSSEA+CEG R   +
Sbjct: 85  VLTKFMLKNCEEGVQPGTEFYVFPQAMSCKCHTCKSSEAACEGYRSKDF 133

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255759843|tpe|CAR95345.1| TPA: putative glycoprotein hormone-beta5 [Tribolium castaneum]

 Score =  148 bits (373), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 79/112 (70%)

Query: 60  TLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGA 119
           T++CHRR+Y YRV+QTD  G++CWD + V++CWGRCDSNE SDWRFPYK+S+HPVC H  
Sbjct: 34  TIECHRRMYTYRVTQTDDNGKQCWDTLSVMACWGRCDSNEISDWRFPYKKSNHPVCVHYG 93

Query: 120 RALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSYNS 171
           R   VV L +CEE        Y YLEA  CKC  C SS+ SCEGLRY    S
Sbjct: 94  RNRSVVTLRHCEEGANPSAARYEYLEAAGCKCQQCSSSDTSCEGLRYRPQRS 145

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158296827|ref|XP_555160.3| AGAP008302-PA [Anopheles gambiae str. PEST] gi|157014899|gb|EAL39598.3| AGAP008302-PA [Anopheles gambiae str. PEST]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/152 (47%), Positives = 93/152 (61%), Gaps = 7/152 (4%)

Query: 31  TGHKRLIMLQSTIGFTLLLFSY-----CAANQDIT--LDCHRRVYKYRVSQTDSLGRKCW 83
           T H RL++    +  TL   S       AA++  T  L CH+R++ YRVSQTDS GR+CW
Sbjct: 7   TVHGRLLLSALCVILTLGGSSSEPDGELAADRPKTAYLGCHKRLFTYRVSQTDSKGRECW 66

Query: 84  DDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRY 143
           D + VLSCWGRCDSNE SDWRFPYKRSHHPVC H  R   V +L +C  + +     Y Y
Sbjct: 67  DHVSVLSCWGRCDSNEISDWRFPYKRSHHPVCVHAGRTKAVALLRHCHPDADPAARQYEY 126

Query: 144 LEALSCKCSVCKSSEASCEGLRYSSYNSLNMI 175
           +E  SC C  C S++ SCEG +  +  ++  I
Sbjct: 127 MEPKSCNCQTCSSTDTSCEGPKQLNTEAVTKI 158

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014312|gb|EFA10760.1| glycoprotein hormone beta 5 [Tribolium castaneum]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 76/105 (72%)

Query: 60  TLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGA 119
           T++CHRR+Y YRV+QTD  G++CWD + V++CWGRCDSNE SDWRFPYK+S+HPVC H  
Sbjct: 34  TIECHRRMYTYRVTQTDDNGKQCWDTLSVMACWGRCDSNEISDWRFPYKKSNHPVCVHYG 93

Query: 120 RALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGL 164
           R   VV L +CEE        Y YLEA  CKC  C SS+ SCEG+
Sbjct: 94  RNRSVVTLRHCEEGANPSAARYEYLEAAGCKCQQCSSSDTSCEGV 138

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170054821|ref|XP_001863304.1| glycoprotein hormone beta subunit [Culex quinquefasciatus] gi|167874991|gb|EDS38374.1| glycoprotein hormone beta subunit [Culex quinquefasciatus] gi|255759847|tpe|CAR95347.1| TPA: putative glycoprotein hormone-beta5 [Culex quinquefasciatus]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 78/115 (67%)

Query: 61  LDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGAR 120
           L CH+RV+ YRVSQTDS GR+CWD + V SC GRCDSNE SDWRFPYKRSHHPVC H  R
Sbjct: 37  LGCHKRVFTYRVSQTDSKGRECWDHVSVWSCHGRCDSNEISDWRFPYKRSHHPVCMHAGR 96

Query: 121 ALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSYNSLNMI 175
              V +L +C  + +   ++Y Y+E  SC C  C S + SCEG +  + +++  I
Sbjct: 97  TRSVAVLRHCHPDADPEAKLYEYMEPKSCSCQTCTSMDTSCEGPKQLNTDAVTKI 151

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241093|ref|XP_970934.2| PREDICTED: similar to AGAP008302-PA [Tribolium castaneum]

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 79/110 (71%), Gaps = 1/110 (0%)

Query: 60  TLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGA 119
           T++CHRR+Y YRV+QTD  G++CWD + V++CWGRCDSNE SDWRFPYK+S+HPVC H  
Sbjct: 34  TIECHRRMYTYRVTQTDDNGKQCWDTLSVMACWGRCDSNEISDWRFPYKKSNHPVCVHYG 93

Query: 120 RALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSY 169
           R   VV L +CEE        Y YLEA  CKC  C SS+ SCE +R++ +
Sbjct: 94  RNRSVVTLRHCEEGANPSAARYEYLEAAGCKCQQCSSSDTSCE-VRFNDW 142

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157119437|ref|XP_001653381.1| hypothetical protein AaeL_AAEL001474 [Aedes aegypti] gi|108883164|gb|EAT47389.1| AAEL001474-PA [Aedes aegypti] gi|255759845|tpe|CAR95346.1| TPA: putative glycoprotein hormone-beta5 [Aedes aegypti]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/140 (45%), Positives = 83/140 (59%), Gaps = 2/140 (1%)

Query: 36  LIMLQSTIGFTLLLFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRC 95
           +I L   +  +L +  +    +   L CH+RV+ YR+SQ DS GR+CWD + V SC GRC
Sbjct: 12  MIALSWAVEDSLFISGF--EKKAPMLGCHKRVFTYRISQADSKGRECWDHVSVWSCHGRC 69

Query: 96  DSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCK 155
           DSNE SDWRFPYKRSHHPVC H  R   V  L +C    +   ++Y Y+E  SC C  C 
Sbjct: 70  DSNEISDWRFPYKRSHHPVCMHAGRTRSVATLRHCHPEADAEAKLYEYMEPKSCSCQTCT 129

Query: 156 SSEASCEGLRYSSYNSLNMI 175
           S + SCEG +  S ++   I
Sbjct: 130 SMDTSCEGPKQLSTDAATKI 149

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66772453|gb|AAY55538.1| IP08744p [Drosophila melanogaster]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 70/103 (67%)

Query: 61  LDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGAR 120
           L CHRRVY Y+V+Q+D  G +CWD + V SCWGRCDS+E SDW+FPYKRS HPVC H  R
Sbjct: 44  LGCHRRVYTYKVTQSDLQGHECWDYVSVWSCWGRCDSSEISDWKFPYKRSFHPVCVHAQR 103

Query: 121 ALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEG 163
            L V IL NC    E     Y+Y+EA++C C  C + + SCE 
Sbjct: 104 QLVVAILKNCHPKAEDSVSKYQYMEAVNCHCQTCSTQDTSCEA 146

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
FB|FBgn0063368	169	Gpb5 "Glycoprotein hormone bet	0.582	0.603	0.558	1.8e-32
ZFIN|ZDB-GENE-090319-4	134	gphb5 "glycoprotein hormone be	0.645	0.843	0.294	1.6e-08
UNIPROTKB|Q86YW7	130	GPHB5 "Glycoprotein hormone be	0.4	0.538	0.342	2e-08
UNIPROTKB|E1BXK9	129	LOC428919 "Uncharacterized pro	0.4	0.542	0.342	2.6e-08
UNIPROTKB|E2R731	130	GPHB5 "Uncharacterized protein	0.4	0.538	0.342	2.6e-08
MGI|MGI:2156540	130	Gphb5 "glycoprotein hormone be	0.611	0.823	0.263	5.3e-08
UNIPROTKB|F1SRQ9	130	LOC100526029 "Uncharacterized	0.611	0.823	0.263	8.7e-08
RGD|1359264	129	Gphb5 "glycoprotein hormone be	0.611	0.829	0.263	8.7e-08
UNIPROTKB|F6Y8D9	104	GPHB5 "Uncharacterized protein	0.262	0.442	0.369	0.00038

FB|FBgn0063368 Gpb5 "Glycoprotein hormone beta 5" [Drosophila melanogaster (taxid:7227)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 57/102 (55%), Positives = 70/102 (68%)

Query:    61 LDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGAR 120
             L CHRRVY Y+V+Q+D  G +CWD + V SCWGRCDS+E SDW+FPYKRS HPVC H  R
Sbjct:    43 LGCHRRVYTYKVTQSDLQGHECWDYVSVWSCWGRCDSSEISDWKFPYKRSFHPVCVHAQR 102

Query:   121 ALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCE 162
              L V IL NC    E     Y+Y+EA++C C  C + + SCE
Sbjct:   103 QLVVAILKNCHPKAEDSVSKYQYMEAVNCHCQTCSTQDTSCE 144

GO:0005179 "hormone activity" evidence=IDA;NAS

GO:0005576 "extracellular region" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IDA

ZFIN|ZDB-GENE-090319-4 gphb5 "glycoprotein hormone beta 5" [Danio rerio (taxid:7955)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 35/119 (29%), Positives = 52/119 (43%)

Query:    46 TLLLFSYCAANQDITLDCHRRVYKYRVSQTDSLGRK--CWD-DIEVLSCWGRCDSNETSD 102
             TL +   C A  + ++   RR     V +   L RK  C    I   +CWGRC++ +   
Sbjct:    15 TLAVLLCCGAYTEASVLNLRRFIGCAVREFTFLARKPGCGGLHITTDACWGRCETWQKPV 74

Query:   103 WRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASC 161
                P+  SH  VC +     + V+L NC   V+     Y +  AL C C +C +S   C
Sbjct:    75 LEPPFIESHQRVCTYNETRQETVLLPNCTAGVDPS---YSFPVALRCDCGLCLTSTTEC 130

GO:0005576 "extracellular region" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

UNIPROTKB|Q86YW7 GPHB5 "Glycoprotein hormone beta-5" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 25/73 (34%), Positives = 34/73 (46%)

Query:    90 SCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSC 149
             +CWGRC++ E      PY  +HH VC +       V L NC   V+     Y Y  A+ C
Sbjct:    59 ACWGRCETWEKPILEPPYIEAHHRVCTYNETKQVTVKLPNCAPGVDP---FYTYPVAIRC 115

Query:   150 KCSVCKSSEASCE 162
              C  C ++   CE
Sbjct:   116 DCGACSTATTECE 128

GO:0005179 "hormone activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|E1BXK9 LOC428919 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 25/73 (34%), Positives = 35/73 (47%)

Query:    90 SCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSC 149
             +CWGRC++ E      PY  S+H VC +    L  V+L  C   V+     Y Y  A+ C
Sbjct:    58 ACWGRCETWERPLLHPPYIESYHRVCTYNETKLVTVMLPKCGPGVDP---FYTYPVAIRC 114

Query:   150 KCSVCKSSEASCE 162
              C  C ++   CE
Sbjct:   115 NCDFCSTATTECE 127

GO:0005179 "hormone activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|E2R731 GPHB5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 25/73 (34%), Positives = 34/73 (46%)

Query:    90 SCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSC 149
             +CWGRC++ E      PY  +HH VC +       V L NC   V+     Y Y  A+ C
Sbjct:    59 ACWGRCETWEKPILEPPYIEAHHRVCTYNETRQVTVKLPNCAPGVDP---FYTYPVAVRC 115

Query:   150 KCSVCKSSEASCE 162
              C  C ++   CE
Sbjct:   116 DCGACSTATTECE 128

GO:0005576 "extracellular region" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

MGI|MGI:2156540 Gphb5 "glycoprotein hormone beta 5" [Mus musculus (taxid:10090)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 30/114 (26%), Positives = 47/114 (41%)

Query:    49 LFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYK 108
             + S  + N    + C  R + +   +    G +   D    +CWGRC++ E      PY 
Sbjct:    22 VLSSSSGNLHTFVGCAVREFTFMAKKPGCRGLRITTD----ACWGRCETWEKPILEPPYI 77

Query:   109 RSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCE 162
              ++H VC +       V L NC   V+     Y Y  A+ C C  C ++   CE
Sbjct:    78 EAYHRVCTYNETRQVTVKLPNCAPGVDP---FYTYPMAVRCDCGACSTATTECE 128

GO:0002155 "regulation of thyroid hormone mediated signaling pathway" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005179 "hormone activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|F1SRQ9 LOC100526029 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 30/114 (26%), Positives = 47/114 (41%)

Query:    49 LFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYK 108
             + S  + N    + C  R + +   +    G +   D    +CWGRC++ E      PY 
Sbjct:    22 VLSTSSGNLRTFVGCAVREFTFLAKKPGCRGLRITTD----ACWGRCETWEKPILEPPYI 77

Query:   109 RSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCE 162
              ++H VC +       V L NC   V+     Y Y  A+ C C  C ++   CE
Sbjct:    78 EAYHRVCTYNETKQVTVKLPNCAPGVDP---FYTYPMAVRCDCGACSTATTECE 128

GO:0005576 "extracellular region" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

RGD|1359264 Gphb5 "glycoprotein hormone beta 5" [Rattus norvegicus (taxid:10116)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 30/114 (26%), Positives = 47/114 (41%)

Query:    49 LFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYK 108
             + S  + N    + C  R + +   +    G +   D    +CWGRC++ E      PY 
Sbjct:    21 VLSSSSGNLHTFVGCAVREFTFVAKKPGCRGLRITTD----ACWGRCETWEKPILEPPYI 76

Query:   109 RSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCE 162
              ++H VC +       V L NC   V+     Y Y  A+ C C  C ++   CE
Sbjct:    77 EAYHRVCTYNETRQVTVKLPNCAPGVDP---FYTYPMAVRCDCGACSTATTECE 127

GO:0002155 "regulation of thyroid hormone mediated signaling pathway" evidence=ISO

GO:0005179 "hormone activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|F6Y8D9 GPHB5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 89 (36.4 bits), Expect = 0.00038, P = 0.00038
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query:    90 SCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVE 135
             +CWGRC++ E      PY  +HH VC +       V L NC   V+
Sbjct:    59 ACWGRCETWEKPILEPPYIEAHHRVCTYNETRQVTVKLPNCAPGVD 104


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.135   0.446    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      175       167   0.00075  108 3  11 22  0.48    31
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  183 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.67u 0.13s 15.80t   Elapsed:  00:00:02
  Total cpu time:  15.67u 0.13s 15.80t   Elapsed:  00:00:02
  Start:  Thu Aug 15 11:22:40 2013   End:  Thu Aug 15 11:22:42 2013

GO:0005576 "extracellular region" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	175
cd00069	96	cd00069, GHB_like, Glycoprotein hormone beta chain	1e-23

>gnl|CDD|200450 cd00069, GHB_like, Glycoprotein hormone beta chain homologues

 Score = 88.9 bits (221), Expect = 1e-23
 Identities = 34/102 (33%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 63  CHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARAL 122
           CH R Y   V +    G      I    C GRCD+ +      PYK SH PVC +     
Sbjct: 1   CHPRNYTIAVEKE---GCGVCLAINTTICAGRCDTRDPVYKSPPYKPSHQPVCTYDEWRY 57

Query: 123 KVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGL 164
           + V L  C   V      Y Y  ALSC+C +C +    C  L
Sbjct: 58  ETVRLPGCPPGV---DPTYTYPVALSCRCGLCNTDTTDCTRL 96

This family of cystine-knot hormones includes the beta chains of gonadotropins, thyrotropins, follitropins, choriogonadotropins and more. The members are reproductive hormones that consist of two glycosylated chains (alpha and beta), which form a tightly bound dimer. Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
smart00068	107	GHB Glycoprotein hormone beta chain homologues. Al	100.0
cd00069	102	GHB Glycoprotein hormone beta chain homologues. Go	100.0
PF00007	105	Cys_knot: Cystine-knot domain; InterPro: IPR006208	99.95
PF03045	121	DAN: DAN domain; InterPro: IPR004133 This domain c	98.58
smart00041	82	CT C-terminal cystine knot-like domain (CTCK). The	97.9
PF05463	198	Sclerostin: Sclerostin (SOST); InterPro: IPR008835	96.32

>smart00068 GHB Glycoprotein hormone beta chain homologues

Probab=100.00  E-value=1.7e-43  Score=270.65  Aligned_cols=103  Identities=21%  Similarity=0.383  Sum_probs=99.8

Q ss_pred             CCCceeeeeeEEEEecCCCCCccceeEEEeeeeeecccCCCCCCCCCCCCCCCCCcccCceEEEEEEeCCCCCCccCCee
Q psy1560          60 TLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTE  139 (175)
Q Consensus        60 ~~~C~l~n~Ti~VEk~dC~~c~C~~~I~Tt~C~G~C~T~e~p~~~~P~~~s~Q~VCty~~~~y~tv~LpgC~~gVdP~~~  139 (175)
                      +++|+|+|+||.|||+||++|   +.||||||+|||+|+| |++++|+...+|+||||++|+|+|++|||||+||||   
T Consensus         2 ~~~C~~~n~ti~vEk~~C~~c---~~i~TTiC~G~C~T~d-pv~~~~~~~~~Q~vCtY~d~~Y~tv~lpgCp~gvdp---   74 (107)
T smart00068        2 RPGCRPTNATIAVEKEECPVC---ITINTTICAGYCYTRD-PVYKSPLPPLPQRVCTYRELRYETVRLPGCPPGVDP---   74 (107)
T ss_pred             CCCceeEeEEEEEeeCCCCce---eEEEeEeECccccccC-ccccCCCCCcccCCccCCceEEEEEECCCccCCCCC---
Confidence            578999999999999999999   9999999999999995 999999999999999999999999999999999999   


Q ss_pred             eEEEeeeeceecCCCCCCCCccccccCccc
Q psy1560         140 VYRYLEALSCKCSVCKSSEASCEGLRYSSY  169 (175)
Q Consensus       140 ~ytYPvAlSC~C~~C~t~~TdC~~~~~~~~  169 (175)
                      +|+||||+||+|++|++++|||+.++.+++
T Consensus        75 ~~tYPVAlSC~C~~C~t~~tdC~~~~~~~~  104 (107)
T smart00068       75 VVTYPVALSCHCGKCNTDTTDCTVESLGPD  104 (107)
T ss_pred             cEEeeeecccCCCCcCCCCccccCcCCCCC
Confidence            999999999999999999999999998764

Also called gonadotropins. Glycoprotein hormones consist of two glycosylated chains (alpha and beta) of similar topology.

>cd00069 GHB Glycoprotein hormone beta chain homologues

Probab=100.00  E-value=6.5e-43  Score=265.48  Aligned_cols=100  Identities=22%  Similarity=0.419  Sum_probs=97.1

Q ss_pred             ceeeeeeEEEEecCCCCCccceeEEEeeeeeecccCCCCCCCCCCCCCCCCCcccCceEEEEEEeCCCCCCccCCeeeEE
Q psy1560          63 CHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYR  142 (175)
Q Consensus        63 C~l~n~Ti~VEk~dC~~c~C~~~I~Tt~C~G~C~T~e~p~~~~P~~~s~Q~VCty~~~~y~tv~LpgC~~gVdP~~~~yt  142 (175)
                      |+|+|+||.|||+||++|   +.||||||+|||+|+| |++++|+...+|+||||++|+|+|++|||||+||||   +|+
T Consensus         1 C~~~n~ti~vEk~~C~~c---~~i~TTiC~G~C~T~d-pv~~~~~~~~~Q~vCtY~~~~Y~tv~lpgCp~gvdp---~~t   73 (102)
T cd00069           1 CRPTNITIAVEKEECPVC---VTINTTICAGYCYTKD-PVYKSPLSPLPQRVCTYRELSYETVRLPGCPPGVDP---GVT   73 (102)
T ss_pred             CcceeEEEEEeeCCCCce---EEEEeeeEccCccccc-ccccccCCCcccCcccCCcEEEEEEECCCCcCCCCC---CEE
Confidence            899999999999999999   9999999999999995 999999999999999999999999999999999999   999


Q ss_pred             EeeeeceecCCCCCCCCccccccCccc
Q psy1560         143 YLEALSCKCSVCKSSEASCEGLRYSSY  169 (175)
Q Consensus       143 YPvAlSC~C~~C~t~~TdC~~~~~~~~  169 (175)
                      ||||+||+|++|++++|||+.++.+++
T Consensus        74 YPVAlsC~C~~C~t~~tdC~~~~~~~~  100 (102)
T cd00069          74 YPVALSCHCGKCNTDTTDCTVLSLGPP  100 (102)
T ss_pred             eeeecccccCCcCCCCccccccCCCCC
Confidence            999999999999999999999988764

Gonadotropins; reproductive hormones consisting of two glycosylated chains (alpha and beta) of similar topology with Cysteine-knot motifs.

>PF00007 Cys_knot: Cystine-knot domain; InterPro: IPR006208 This domain is found at the C-terminal of glycoprotein hormones and various extracellular proteins

Probab=99.95  E-value=1.4e-28  Score=184.27  Aligned_cols=102  Identities=25%  Similarity=0.485  Sum_probs=90.0

Q ss_pred             CCceeeeeeEEEEecCCCCCccceeEEEeeeeeecccCCCCCCCCCCCCCCCCCcccCceEEEEEEeCCCCCCccCCeee
Q psy1560          61 LDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEV  140 (175)
Q Consensus        61 ~~C~l~n~Ti~VEk~dC~~c~C~~~I~Tt~C~G~C~T~e~p~~~~P~~~s~Q~VCty~~~~y~tv~LpgC~~gVdP~~~~  140 (175)
                      ++|++++++|.||++||..+   ..|++++|||+|+|++ +++++|++..+|.+|++.++.++++.|+|||+|+||   .
T Consensus         2 ~~C~~~~~ti~ve~~gC~s~---~~v~~~~C~G~C~s~~-~~~~~~~~~~~~~~Cc~~~~~~~~~v~~~C~~G~~~---~   74 (105)
T PF00007_consen    2 PGCHLTNVTIKVEKSGCRSC---KTVNTTYCSGYCESSE-PYSKDPRKFQSQCVCCYPERTYETVVLLGCPDGVDP---T   74 (105)
T ss_dssp             BBSEEEEEEEEEEECCCTEE---EEEEEEEEEEEEEEE---SCTTTTT----EEEEEEEEEEEEEEETTBTTCS-E---E
T ss_pred             CCCeEeeeEEEEEeCCCCCc---eEEEEEEEEEEecCCe-EecccCCcCcccCcCCCcceEEEEEECCCCccCCcc---e
Confidence            57999999999999999987   8999999999999998 999999999999999999999999999999999999   8


Q ss_pred             EEEeeeeceecCCCCCCCCccccccCccc
Q psy1560         141 YRYLEALSCKCSVCKSSEASCEGLRYSSY  169 (175)
Q Consensus       141 ytYPvAlSC~C~~C~t~~TdC~~~~~~~~  169 (175)
                      |+||+|+||+|+.|+++++||++++....
T Consensus        75 ~~y~~a~sC~C~~C~~~~t~c~~~~~~~~  103 (105)
T PF00007_consen   75 FTYPVATSCSCSNCNTDTTDCTRRSLSPS  103 (105)
T ss_dssp             EEEEEEEEEEEEEEETTTEEEESS-SSTT
T ss_pred             EEeeEeeeeeCCCCCCCcccccCccCCCC
Confidence            99999999999999999999999887653

It is believed to be involved in disulphide-linked dimerisation. ; PDB: 1QFW_B 1HRP_B 1HCN_B 1XWD_B 1FL7_B.

>PF03045 DAN: DAN domain; InterPro: IPR004133 This domain contains 9 conserved cysteines and is extracellular

Probab=98.58  E-value=3.7e-07  Score=70.88  Aligned_cols=96  Identities=19%  Similarity=0.213  Sum_probs=78.1

Q ss_pred             hcCCCCCCCceeeeeeEEEEecCCCCCccceeEEEeeeeeecccCCCCCCCCCCC----CCCCCCcccCceEEEEEEeCC
Q psy1560          54 AANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYK----RSHHPVCQHGARALKVVILNN  129 (175)
Q Consensus        54 ~~~~~~~~~C~l~n~Ti~VEk~dC~~c~C~~~I~Tt~C~G~C~T~e~p~~~~P~~----~s~Q~VCty~~~~y~tv~Lpg  129 (175)
                      .........|+.++|+-.|..+||...    .|....|.|+|.|+-+|.......    ...=..|...+++..+|+|. 
T Consensus        21 ~~~~~~~~~Ck~~p~~Q~I~~~GC~s~----~I~N~~C~GqC~S~~iP~~~~~~~~~~~~~~C~~C~P~~~~~~~V~L~-   95 (121)
T PF03045_consen   21 KLQPLKRDWCKTVPFTQVISHPGCESV----TIQNNFCFGQCSSFYIPSSVPSDPGSQPFQSCSCCQPSRFRWVTVTLR-   95 (121)
T ss_pred             cccccccCccEEEeeEEEECcCCceEE----EEEeeeeEEEcceEEeeCCcccccccccCcccCccCCCeeEEEEEEEE-
Confidence            334557889999999999999999995    999999999999998887643221    23345599999999999995 


Q ss_pred             CCCCccCCeeeEEEeeeeceecCCCC
Q psy1560         130 CEENVEQGTEVYRYLEALSCKCSVCK  155 (175)
Q Consensus       130 C~~gVdP~~~~ytYPvAlSC~C~~C~  155 (175)
                      ||.+..+. ++-.+..+.+|+|..|+
T Consensus        96 C~~~~~~~-~~k~v~~v~~C~C~~~~  120 (121)
T PF03045_consen   96 CPGGSPPF-RVKRVQIVEECSCSSCS  120 (121)
T ss_pred             CcCCCCCc-ceEEEEEeeecccCccc
Confidence            99987663 24678999999999986

Therefore the cysteines may form disulphide bridges. This family of proteins has been termed the DAN family [] after the first member to be reported. This family includes DAN, Cerberus and Gremlin. The gremlin protein is an antagonist of bone morphogenetic protein signalling. It is postulated that all members of this family antagonize different TGF beta TGF-beta ligands [].

>smart00041 CT C-terminal cystine knot-like domain (CTCK)

Probab=97.90  E-value=5.7e-05  Score=54.52  Aligned_cols=77  Identities=14%  Similarity=0.259  Sum_probs=60.6

Q ss_pred             eeeEEEEecCCCCCccceeEEEeeeeeecccCCCCCCCCCCCCCCCCCcccCceEEEEEEeCCCCCCccCCeeeEEEeee
Q psy1560          67 VYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEA  146 (175)
Q Consensus        67 n~Ti~VEk~dC~~c~C~~~I~Tt~C~G~C~T~e~p~~~~P~~~s~Q~VCty~~~~y~tv~LpgC~~gVdP~~~~ytYPvA  146 (175)
                      .+...++.+||...    .|..+.|.|.|.++-+++...++  ..-..|.-.+++.+.|+| .||+|-.   ..+.|..+
T Consensus         3 ~~~q~i~~~gC~s~----~v~~~~C~G~C~s~~~~~~~~~~--~~c~CC~p~~~~~~~v~l-~C~dg~~---~~~~v~~i   72 (82)
T smart00041        3 PVRQTITYNGCTSV----TVKNAFCEGKCGSASSYSIQDVQ--HSCSCCQPHKTKTRQVRL-RCPDGST---VKKTVMHI   72 (82)
T ss_pred             ceEEEEEeCCceEe----EEEcCcEEeECCCeeEcCccccc--cCCCccCCceeEEEEEEE-ECCCCCE---EEEEEEEE
Confidence            45667778889886    49999999999887666553222  114689999999999999 5998853   46899999


Q ss_pred             eceecCC
Q psy1560         147 LSCKCSV  153 (175)
Q Consensus       147 lSC~C~~  153 (175)
                      .+|.|..
T Consensus        73 ~~C~C~~   79 (82)
T smart00041       73 EECGCEP   79 (82)
T ss_pred             Eeccccc
Confidence            9999976

The structures of transforming growth factor-beta (TGFbeta), nerve growth factor (NGF), platelet-derived growth factor (PDGF) and gonadotropin all form 2 highly twisted antiparallel pairs of beta-strands and contain three disulphide bonds. The domain is non-globular and little is conserved among these presumed homologues except for their cysteine residues. CT domains are predicted to form homodimers.

>PF05463 Sclerostin: Sclerostin (SOST); InterPro: IPR008835 This family contains several mammalian sclerostin (SOST) proteins

Probab=96.32  E-value=0.018  Score=48.89  Aligned_cols=90  Identities=20%  Similarity=0.364  Sum_probs=56.5

Q ss_pred             CCCCCCceeeeeeEEEEecCCCCCccceeEEEeeeeeecccCCC-CCCCCCCC-CCCCCC----cccCceEEEEEEeCCC
Q psy1560          57 QDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNET-SDWRFPYK-RSHHPV----CQHGARALKVVILNNC  130 (175)
Q Consensus        57 ~~~~~~C~l~n~Ti~VEk~dC~~c~C~~~I~Tt~C~G~C~T~e~-p~~~~P~~-~s~Q~V----Cty~~~~y~tv~LpgC  130 (175)
                      .....+|+--.+|-+|..--|..-   -.|.--.|+|.|..... |.|+.--+ ++.+.+    |.-+..+.+.|+|. |
T Consensus        62 ~~~~~~CrELrstrYisdG~C~S~---kPikelvCsGqClP~~llPn~Ig~~k~W~R~~~~e~RCv~d~~RtqrVqL~-C  137 (198)
T PF05463_consen   62 DASQVGCRELRSTRYISDGQCRSA---KPIKELVCSGQCLPAHLLPNWIGRGKYWWRRSAQEWRCVPDHTRTQRVQLQ-C  137 (198)
T ss_dssp             TTTTTSS-CEEEEE--EETTEEES---S-EEEEEE----S-----TTSTTSSS-SSSSS------EEEEEEEEEEEEE--
T ss_pred             CcccCccceeeeeeeeecCccccc---CchhhheeeccccccccCcccccccceecccCCCcccccCCcceeEEEEEE-C
Confidence            346788999999999988666665   78999999999997764 66655333 333333    99899999999995 9


Q ss_pred             CCCccCCeeeEEEeeeeceecCC
Q psy1560         131 EENVEQGTEVYRYLEALSCKCSV  153 (175)
Q Consensus       131 ~~gVdP~~~~ytYPvAlSC~C~~  153 (175)
                      |+|.-   ++|-.-|..||+|..
T Consensus       138 ~dG~t---RTyKI~vVtSCKCKR  157 (198)
T PF05463_consen  138 PDGTT---RTYKIRVVTSCKCKR  157 (198)
T ss_dssp             TTTSS---EEEEEEEEEEEE---
T ss_pred             CCCCe---eEEEEEEEEEeeecc
Confidence            99954   589999999999975

SOST is thought to suppress bone formation. Mutations of the SOST gene lead to sclerosteosis, a progressive sclerosing bone dysplasia with an autosomal recessive mode of inheritance. Radiologically, it is characterised by a generalised hyperostosis and sclerosis leading to a markedly thickened and sclerotic skull, with mandible, ribs, clavicles and all long bones also being affected. Due to narrowing of the foramina of the cranial nerves, facial nerve palsy, hearing loss and atrophy of the optic nerves can occur. Sclerosteosis is clinically and radiologically very similar to van Buchem disease, mainly differentiated by hand malformations and a large stature in sclerosteosis patients [].; GO: 0005615 extracellular space; PDB: 2KD3_A 3SOV_Z 2K8P_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	175
1hcn_B	145	Human chorionic gonadotropin; hormone; HET: NAG; 2	1e-09
4ay9_B	111	Follitropin subunit beta; hormone-receptor complex	3e-09

>1hcn_B Human chorionic gonadotropin; hormone; HET: NAG; 2.60A {Homo sapiens} SCOP: g.17.1.4 PDB: 1hrp_B* 1qfw_B* Length = 145

 Score = 53.1 bits (127), Expect = 1e-09
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 86  IEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 145
           +    C G C +      +         VC +     + + L  C   V     V  Y  
Sbjct: 29  VNTTICAGYCPTMT-RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVN---PVVSYAV 84

Query: 146 ALSCKCSVCKSSEASCEGLR 165
           ALSC+C++C+ S   C G +
Sbjct: 85  ALSCQCALCRRSTTDCGGPK 104

>4ay9_B Follitropin subunit beta; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_B* 1fl7_B* Length = 111

 Score = 51.5 bits (123), Expect = 3e-09
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 4/80 (5%)

Query: 86  IEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 145
           I    C G C + +   ++ P +      C       + V +  C  + +    +Y Y  
Sbjct: 23  INTTWCAGYCYTRD-LVYKDPARPKIQKTCTFKELVYETVRVPGCAHHAD---SLYTYPV 78

Query: 146 ALSCKCSVCKSSEASCEGLR 165
           A  C C  C S    C    
Sbjct: 79  ATQCHCGKCDSDSTDCTVRG 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	175
4ay9_B	111	Follitropin subunit beta; hormone-receptor complex	100.0
1hcn_B	145	Human chorionic gonadotropin; hormone; HET: NAG; 2	100.0
2k8p_A	189	Sclerostin; WNT signalling pathway, bone formation	94.92

>4ay9_B Follitropin subunit beta; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_B* 1fl7_B*

Probab=100.00  E-value=9.4e-43  Score=266.92  Aligned_cols=100  Identities=17%  Similarity=0.376  Sum_probs=96.7

Q ss_pred             CCceeeeeeEEEEecCCCCCccceeEEEeeeeeecccCCCCCCCCCCCCCCCCCcccCceEEEEEEeCCCCCCccCCeee
Q psy1560          61 LDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEV  140 (175)
Q Consensus        61 ~~C~l~n~Ti~VEk~dC~~c~C~~~I~Tt~C~G~C~T~e~p~~~~P~~~s~Q~VCty~~~~y~tv~LpgC~~gVdP~~~~  140 (175)
                      ++|+|+|+||.|||+||++|   ++||||||||||+|+| |+|++|++.++|+||||++|+|+|++|||||+||||   +
T Consensus         1 ~~C~~~n~ti~vEk~~C~~c---~~i~TtiC~G~C~T~d-~v~~~p~~~~~Q~VCty~~~~y~tv~LpgC~pgVdP---~   73 (111)
T 4ay9_B            1 NSCELTNITIAIEKEECRFC---ISINTTWCAGYCYTRD-LVYKDPARPKIQKTCTFKELVYETVRVPGCAHHADS---L   73 (111)
T ss_dssp             CCEEEEEEEEEEEEGGGTEE---EEEEEEEEEEEEEEEC-CSSCCTTCCCCCCEEEEEEEEEEEEEECCCTTSCCE---E
T ss_pred             CCcceEeEEEEEEcCCCCcc---cEEEEeeEccCcccCC-ccccCcCCCccCCCcccCCEEEEEEECCCccCCCCC---C
Confidence            47999999999999999999   8999999999999997 999999999999999999999999999999999999   9


Q ss_pred             EEEeeeeceecCCCCCCCCccccccCc
Q psy1560         141 YRYLEALSCKCSVCKSSEASCEGLRYS  167 (175)
Q Consensus       141 ytYPvAlSC~C~~C~t~~TdC~~~~~~  167 (175)
                      |+||||+||+|++|++++|||+..+..
T Consensus        74 ~tYPVA~sC~C~~C~t~~TdCt~~~~~  100 (111)
T 4ay9_B           74 YTYPVATQCHCGKCDSDSTDCTVRGLG  100 (111)
T ss_dssp             EEEEEEEEEEEECBCTTTEEEESCCSC
T ss_pred             EEeeecccccCCCcCCCCccccccCCC
Confidence            999999999999999999999987655

>1hcn_B Human chorionic gonadotropin; hormone; HET: NAG; 2.60A {Homo sapiens} SCOP: g.17.1.4 PDB: 1hrp_B* 1qfw_B*

Probab=100.00  E-value=1.4e-40  Score=264.80  Aligned_cols=106  Identities=20%  Similarity=0.362  Sum_probs=101.9

Q ss_pred             CCCCCCceeeeeeEEEEecCCCCCccceeEEEeeeeeecccCCCCCCCCCCCCCCCCCcccCceEEEEEEeCCCCCCccC
Q psy1560          57 QDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQ  136 (175)
Q Consensus        57 ~~~~~~C~l~n~Ti~VEk~dC~~c~C~~~I~Tt~C~G~C~T~e~p~~~~P~~~s~Q~VCty~~~~y~tv~LpgC~~gVdP  136 (175)
                      +.++++|||+||||.|||+||++|   +.||||||||||+||| |+|++|+...+|+||||++|+|++|+||||++||||
T Consensus         3 ~~~~~~C~l~n~Ti~vEke~C~~c---~~InTtiC~GyC~T~d-pv~~~p~~~~~Q~vCTy~e~~y~tv~LpgC~~gvdp   78 (145)
T 1hcn_B            3 EPLRPRCRPINATLAVEKEGCPVC---ITVNTTICAGYCPTMT-RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNP   78 (145)
T ss_dssp             CCSSBBSEEEEEEEEECCTTCSCC---EEEEEEEEEEEEEECC-CCBTTCSSCCCCEEEEEEEEEEEEEECTTCCSSCCC
T ss_pred             CcccCCCeEeeeEEEEeeCCCCce---EEEEeeeEcCEeecCC-CCCcCCCCCccCCCcccCCEEEEEEEcCCCcCCCCc
Confidence            467899999999999999999999   9999999999999998 999999999999999999999999999999999999


Q ss_pred             CeeeEEEeeeeceecCCCCCCCCccccccCccc
Q psy1560         137 GTEVYRYLEALSCKCSVCKSSEASCEGLRYSSY  169 (175)
Q Consensus       137 ~~~~ytYPvAlSC~C~~C~t~~TdC~~~~~~~~  169 (175)
                         +|+||||+||+|++|++++|||++++.+..
T Consensus        79 ---~~tYPVA~SC~C~~C~~~~tdC~~~~~~p~  108 (145)
T 1hcn_B           79 ---VVSYAVALSCQCALCRRSTTDCGGPKDHPL  108 (145)
T ss_dssp             ---EEEEEEEEEEEEEECCTTTEEEECCCSCCS
T ss_pred             ---cEEecccccccCCCCCCCCccccCcCCCCC
Confidence               999999999999999999999999987754

>2k8p_A Sclerostin; WNT signalling pathway, bone formation, alternative splicing, glycoprotein, secreted, signaling protein; NMR {Homo sapiens} PDB: 2kd3_A

Probab=94.92  E-value=0.1  Score=42.81  Aligned_cols=88  Identities=17%  Similarity=0.255  Sum_probs=67.5

Q ss_pred             CCCCceeeeeeEEEEecCCCCCccceeEEEeeeeeecccCC-CCCCCC---CCCCC-CCCCcccCceEEEEEEeCCCCCC
Q psy1560          59 ITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNE-TSDWRF---PYKRS-HHPVCQHGARALKVVILNNCEEN  133 (175)
Q Consensus        59 ~~~~C~l~n~Ti~VEk~dC~~c~C~~~I~Tt~C~G~C~T~e-~p~~~~---P~~~s-~Q~VCty~~~~y~tv~LpgC~~g  133 (175)
                      .-.+|+-.-++-++....|...   ..|.-..|+|.|.... .|+|.-   -++.+ ....|+-...+.+.|+|. |++|
T Consensus        52 ~~~~Crg~r~r~Yisdg~CrS~---kpVk~lvCsG~C~p~~~lpn~i~~~K~wr~s~~~~cCvp~rsRrrRIqm~-C~DG  127 (189)
T 2k8p_A           52 SEYSCRELHFTRYVTDGPCRSA---KPVTELVCSGQCGPARLLPNAIGRGKWWRPSGPDFRCIPDRYRAQRVQLL-CPGG  127 (189)
T ss_dssp             CCSSSCEEEEEECCCCSSCEES---SCEEEEEECCCCCCCCCCSSCCCSSCCCSCCCCCCCCEECCEEEEEEEEE-CCTT
T ss_pred             cccccccceeeEEEecCceeEc---cccccceEeccccCccccccccccccccccCCCcccccCCceeeEEEEEE-cCCC
Confidence            4578999999988988888887   7999999999997443 243332   11112 256899999999999996 9999


Q ss_pred             ccCCeeeEEEeeeeceecC
Q psy1560         134 VEQGTEVYRYLEALSCKCS  152 (175)
Q Consensus       134 VdP~~~~ytYPvAlSC~C~  152 (175)
                      --|  .++..-+-.+|+|.
T Consensus       128 tt~--rt~ki~vV~sCkCk  144 (189)
T 2k8p_A          128 EAP--RARKVRLVASCKCK  144 (189)
T ss_dssp             SCC--EEEEEEEECCEECC
T ss_pred             Cee--eEEEEEEEEeeccc
Confidence            775  35666778899999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	175
d1xwdb1	105	g.17.1.4 (B:3-107) Follicle stimulating hormone, f	8e-16
d1hcnb_	110	g.17.1.4 (B:) Gonadotropin B chain {Human (Homo sa	1e-15

>d1xwdb1 g.17.1.4 (B:3-107) Follicle stimulating hormone, follitropin, beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Gonadodropin/Follitropin
domain: Follicle stimulating hormone, follitropin, beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (164), Expect = 8e-16
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 86  IEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 145
           I    C G C + +   ++ P +      C       + V +  C  + +    +Y Y  
Sbjct: 21  INTTWCAGYCYTRDLV-YKDPARPKIQKTCTFKELVYETVRVPGCAHHAD---SLYTYPV 76

Query: 146 ALSCKCSVCKSSEASCE 162
           A  C C  C S    C 
Sbjct: 77  ATQCHCGKCDSDSTDCT 93

>d1hcnb_ g.17.1.4 (B:) Gonadotropin B chain {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Gonadodropin/Follitropin
domain: Gonadotropin B chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (163), Expect = 1e-15
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 86  IEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 145
           +    C G C +      +         VC +     + + L  C   V     V  Y  
Sbjct: 28  VNTTICAGYCPTMT-RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVN---PVVSYAV 83

Query: 146 ALSCKCSVCKSSEASCEGLR 165
           ALSC+C++C+ S   C G +
Sbjct: 84  ALSCQCALCRRSTTDCGGPK 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	175
d1hcnb_	110	Gonadotropin B chain {Human (Homo sapiens) [TaxId:	100.0
d1xwdb1	105	Follicle stimulating hormone, follitropin, beta ch	100.0

>d1hcnb_ g.17.1.4 (B:) Gonadotropin B chain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Gonadodropin/Follitropin
domain: Gonadotropin B chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-44  Score=274.63  Aligned_cols=105  Identities=20%  Similarity=0.360  Sum_probs=101.6

Q ss_pred             CCCCCceeeeeeEEEEecCCCCCccceeEEEeeeeeecccCCCCCCCCCCCCCCCCCcccCceEEEEEEeCCCCCCccCC
Q psy1560          58 DITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQG  137 (175)
Q Consensus        58 ~~~~~C~l~n~Ti~VEk~dC~~c~C~~~I~Tt~C~G~C~T~e~p~~~~P~~~s~Q~VCty~~~~y~tv~LpgC~~gVdP~  137 (175)
                      ..++.|+|+|+||+|||+||++|   ++||||||||||+|+| |+|++|++.++|+||||++|+|+|++|||||+|||| 
T Consensus         3 p~~~~C~~~n~ti~vEke~C~~c---~~i~TTiC~G~C~T~d-pv~~~~~~~~~Q~vCty~~~~y~tv~LpgCp~gVdP-   77 (110)
T d1hcnb_           3 PLRPRCRPINATLAVEKEGCPVC---ITVNTTICAGYCPTMT-RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNP-   77 (110)
T ss_dssp             CSSBBSEEEEEEEEECCTTCSCC---EEEEEEEEEEEEEECC-CCBTTCSSCCCCEEEEEEEEEEEEEECTTCCSSCCC-
T ss_pred             CccCCccceeeEEEEEecCCCcE---EEEEeEeEccEecccC-ccccCcCCCccCCccccCCeEEEEEECCCCCCCCCC-
Confidence            46899999999999999999999   9999999999999997 999999999999999999999999999999999999 


Q ss_pred             eeeEEEeeeeceecCCCCCCCCccccccCccc
Q psy1560         138 TEVYRYLEALSCKCSVCKSSEASCEGLRYSSY  169 (175)
Q Consensus       138 ~~~ytYPvAlSC~C~~C~t~~TdC~~~~~~~~  169 (175)
                        +|+||||+||+|++|++++|||++++.+++
T Consensus        78 --~~tYPVAlsC~C~~C~t~~tdC~~~~~~p~  107 (110)
T d1hcnb_          78 --VVSYAVALSCQCALCRRSTTDCGGPKDHPL  107 (110)
T ss_dssp             --EEEEEEEEEEEEEECCTTTEEEECCCSCCS
T ss_pred             --cEEeeeccccccCccCCCCccccCcCCCCC
Confidence              999999999999999999999999998764

>d1xwdb1 g.17.1.4 (B:3-107) Follicle stimulating hormone, follitropin, beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Gonadodropin/Follitropin
domain: Follicle stimulating hormone, follitropin, beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-43  Score=267.18  Aligned_cols=100  Identities=17%  Similarity=0.379  Sum_probs=96.7

Q ss_pred             ceeeeeeEEEEecCCCCCccceeEEEeeeeeecccCCCCCCCCCCCCCCCCCcccCceEEEEEEeCCCCCCccCCeeeEE
Q psy1560          63 CHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYR  142 (175)
Q Consensus        63 C~l~n~Ti~VEk~dC~~c~C~~~I~Tt~C~G~C~T~e~p~~~~P~~~s~Q~VCty~~~~y~tv~LpgC~~gVdP~~~~yt  142 (175)
                      |+|+|+||+|||+||++|   ++||||||||||+|+| |+|++|++.++|+||||++|+|+|++|||||+||||   +|+
T Consensus         1 C~~~n~ti~vEk~~C~~c---~~i~TTiC~G~C~t~d-pv~~~p~~~~~Q~vCty~~~~y~tv~LpgCp~gVdP---~~t   73 (105)
T d1xwdb1           1 CELTNITIAIEKEECRFC---ISINTTWCAGYCYTRD-LVYKDPARPKIQKTCTFKELVYETVRVPGCAHHADS---LYT   73 (105)
T ss_dssp             CEEEEEEEEEEETTTTEE---EEEEEEEEEEEEEEEC-CSSCCTTSCCCCCEEEEEEEEEEEEEECCBTTBCCE---EEE
T ss_pred             CCcEeEEEEeecCCCCce---EEEEeEeECcCCCccC-ccccCcCCCcCCCccccCCEEEEEEECCCccCCCCC---cEE
Confidence            899999999999999999   9999999999999997 999999999999999999999999999999999999   999


Q ss_pred             EeeeeceecCCCCCCCCccccccCccc
Q psy1560         143 YLEALSCKCSVCKSSEASCEGLRYSSY  169 (175)
Q Consensus       143 YPvAlSC~C~~C~t~~TdC~~~~~~~~  169 (175)
                      ||||+||+|++|++++|||+..+.+.+
T Consensus        74 YPVA~sC~C~~C~t~~tdC~~~~~~p~  100 (105)
T d1xwdb1          74 YPVATQCHCGKCDSDSTDCTVRGLGPS  100 (105)
T ss_dssp             EEEEEEEEEECBCTTTEEEESCCSCTT
T ss_pred             eeeccccccCCcCCCCccceeccCCCC
Confidence            999999999999999999999877643