Psyllid ID: psy15738

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MFADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK
Secondary Structure (PSIPRED)
cEEEccccEEEEEEcccEEEEEEEEEEEEccccccEEEEEEEcEEEccccEEEEEEcccccEEEEEEEEEEEEEEEEEEccccccEEEEEEEEEcccEEEEEccccEEEEEccccEEEEEEEEEEcccEEEEEEcccccccccEEEEccEEEEccccccccEEEEEEEEcccccccEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEccEEEEccEEEEEEEcccccEEEEEEccccHHccccEEEEEccccEEEEEEEEccccEEccccccEEEEccccEEEEcEEEEEcccEEEEEEccccccccccEccccEEEEEEEEHHHccEEEEEEccccccccEEEEEEEEEcc
Coil and Loop (DISEMBL)
mfadsrpestfwifgkpitRIMFADLAIMFadsrpestFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRKKRKKKkkkkekrippriiyvsGAGKVEVKKGYSVTleckadgnpvpnitwtrknnnlpggeysysgnsltvrhtnrhsAGIYLCVANNMVGSSAAASIALHVLCK
Flexible Loop (DISEMBL)
mfadsrpestfwifgkpITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERkkkkkrkkrkkkkkkkekrippriiyvsgagkvevKKGYSVTLeckadgnpvpnitwtrknnnlpggEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK
Low Complexity Region (SEG)
MFADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMekeeeerkkkkkrkkrkkkkkkkekrIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK
Disordered region (IsUnstruct)
*********TFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILA******************************RIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC*
Disordered Region (DISOPRED)
MFADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLI************LHYLSYILAMEKEEEE**************KKKEKRIPPRIIY**********KGYSVTLECKADGNPVPNITWTRKNNN*****YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK
Disordered Region (DISEMBL)
********STFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEK***********************RIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK
Disordered Region (DISPRO)
*******ESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAxxxxxxxxxxxxxxxxxxxxxxxxxxRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q26474	349	Lachesin OS=Schistocerca	N/A	N/A	0.470	0.252	0.393	2e-10
A2AJ76	5100	Hemicentin-2 OS=Mus muscu	no	N/A	0.491	0.018	0.312	8e-10
Q24372	359	Lachesin OS=Drosophila me	no	N/A	0.470	0.245	0.359	2e-09
Q8NDA2	5065	Hemicentin-2 OS=Homo sapi	no	N/A	0.491	0.018	0.302	6e-09
Q96RW7	5635	Hemicentin-1 OS=Homo sapi	no	N/A	0.363	0.012	0.405	2e-08
P82987	1691	ADAMTS-like protein 3 OS=	no	N/A	0.427	0.047	0.358	3e-08
Q9BWV1	1114	Brother of CDO OS=Homo sa	no	N/A	0.465	0.078	0.363	3e-08
Q6AZB0	1110	Brother of CDO OS=Mus mus	no	N/A	0.465	0.078	0.363	2e-07
P13595	1115	Neural cell adhesion mole	no	N/A	0.427	0.071	0.315	2e-07
P13590	1091	Neural cell adhesion mole	no	N/A	0.427	0.073	0.315	2e-07

>sp|Q26474|LACH_SCHAM Lachesin OS=Schistocerca americana GN=LAC PE=1 SV=1

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 97  PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNN-LPGGEYSYSGNSLTVRH 155
           P +I  +    + V +G +V LEC A G P P ++W R+NN  LP G   Y GN L +  
Sbjct: 131 PPVISDNSTRSLVVSEGQAVRLECYAGGYPAPRVSWRRENNAILPTGGSIYRGNVLKISR 190

Query: 156 TNRHSAGIYLCVANNMVGSSAAASIALHV 184
             +   G Y CVA N VG  A  +IA+ V
Sbjct: 191 IGKEDRGTYYCVAENGVGKGARRNIAVEV 219

May play a role in early neuronal differentiation and axon outgrowth.
Schistocerca americana (taxid: 7009)

>sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 92   EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWT---RKNNNLPGGEYSYSG 148
            E ++PP+++   G G+V    G S+ L C+A G+PVP I W    R    L G + +  G
Sbjct: 1717 EMQVPPQLLVAEGMGQVTATVGQSLDLPCQASGSPVPTIQWLQNGRPAEELAGVQLASQG 1776

Query: 149  NSLTVRHTNRHSAGIYLCVANNMVGSSAA-ASIALH 183
              L + H   + +G++ C A N  G++ A   +++H
Sbjct: 1777 TILHISHVELNHSGLFACQATNEAGTAGAEVEVSVH 1812

Mus musculus (taxid: 10090)

>sp|Q24372|LACH_DROME Lachesin OS=Drosophila melanogaster GN=Lac PE=2 SV=2

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 97  PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNN-LPGGEYSYSGNSLTVRH 155
           P +I  +    V   +G  V +EC A G P P ITW R+NN  LP    +Y GN+L ++ 
Sbjct: 134 PPVISDNSTQSVVASEGSEVQMECYASGYPTPTITWRRENNAILPTDSATYVGNTLRIKS 193

Query: 156 TNRHSAGIYLCVANNMVGSSAAASIALHV 184
             +   G Y CVA+N V      +I + V
Sbjct: 194 VKKEDRGTYYCVADNGVSKGDRRNINVEV 222

Required for normal tracheal development and maintenance of the trans-epithelial diffusion barrier. Functions as a homophilic cell-adhesion molecule. May play a role in early neuronal differentiation and axon outgrowth.

Drosophila melanogaster (taxid: 7227)

>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2

 Score = 60.5 bits (145), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 92   EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWT---RKNNNLPGGEYSYSG 148
            E ++PP+++   G G+V    G  + L C+A G+PVP I W    R    L G + +  G
Sbjct: 1683 EVQVPPQLLVAEGLGQVTTIVGQPLELPCQASGSPVPTIQWLQNGRPAEELAGVQVASQG 1742

Query: 149  NSLTVRHTNRHSAGIYLCVANNMVGSSAA-ASIALH 183
             +L + H     +G++ C A N  G++ A   +++H
Sbjct: 1743 TTLHIDHVELDHSGLFACQATNEAGTAGAEVEVSVH 1778

Homo sapiens (taxid: 9606)

>sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 106  GKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNS-LTVRHTNRHSAGIY 164
            G V + KG  + L CKA G P+P +TWT  NN +P    S +G+S L +   ++  +G Y
Sbjct: 4267 GDVSLNKGEQLRLSCKATGIPLPKLTWTFNNNIIPAHFDSVNGHSELVIERVSKEDSGTY 4326

Query: 165  LCVANNMVG 173
            +C A N VG
Sbjct: 4327 VCTAENSVG 4335

Homo sapiens (taxid: 9606)

>sp|P82987|ATL3_HUMAN ADAMTS-like protein 3 OS=Homo sapiens GN=ADAMTSL3 PE=2 SV=4

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 105  AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIY 164
             G VE   G +VT+ C   G P PNITW ++  +L G        SL +++ +  + G Y
Sbjct: 1306 GGIVEAALGANVTIRCPVKGVPQPNITWLKRGGSLSGNVSLLFNGSLLLQNVSLENEGTY 1365

Query: 165  LCVANNMVGSSAAASIALHVL 185
            +C+A N +G + A S+ LH+L
Sbjct: 1366 VCIATNALGKAVATSV-LHLL 1385

Homo sapiens (taxid: 9606)

>sp|Q9BWV1|BOC_HUMAN Brother of CDO OS=Homo sapiens GN=BOC PE=1 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 98  RIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG-GEYSYSGNSLTVRHT 156
           RIIY   A  + V KG S+ LEC A G P P +TW +  +++ G  +  +  ++L +  T
Sbjct: 230 RIIYPPEAQTIIVTKGQSLILECVASGIPPPRVTWAKDGSSVTGYNKTRFLLSNLLIDTT 289

Query: 157 NRHSAGIYLCVANNMVGSSAAASIALHV 184
           +   +G Y C+A+N VG   AA I  +V
Sbjct: 290 SEEDSGTYRCMADNGVGQPGAAVILYNV 317

Component of a cell-surface receptor complex that mediates cell-cell interactions between muscle precursor cells. Promotes differentiation of myogenic cells.

Homo sapiens (taxid: 9606)

>sp|Q6AZB0|BOC_MOUSE Brother of CDO OS=Mus musculus GN=Boc PE=1 SV=2

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 98  RIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG-GEYSYSGNSLTVRHT 156
           RIIY   A  V V KG S+ LEC A G P P +TW +  +++    +  +  ++L +  T
Sbjct: 225 RIIYPLEAQTVIVTKGQSLILECVASGIPPPRVTWAKDGSSIAAYNKTRFLLSNLLIDTT 284

Query: 157 NRHSAGIYLCVANNMVGSSAAASIALHV 184
           +   +G Y C+A+N VG   AA I  +V
Sbjct: 285 SEEDSGTYRCMASNGVGDPGAAVILYNV 312

Component of a cell-surface receptor complex that mediates cell-cell interactions between muscle precursor cells. Promotes differentiation of myogenic cells.

Mus musculus (taxid: 10090)

>sp|P13595|NCAM1_MOUSE Neural cell adhesion molecule 1 OS=Mus musculus GN=Ncam1 PE=1 SV=3

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 12/92 (13%)

Query: 97  PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSG-------- 148
           P+I YV     +E+++   VTL C+A G+P+P+ITW     N+   E +  G        
Sbjct: 309 PKITYVENQTAMELEE--QVTLTCEASGDPIPSITWRTSTRNISSEEKTLDGHMVVRSHA 366

Query: 149 --NSLTVRHTNRHSAGIYLCVANNMVGSSAAA 178
             +SLT++      AG Y+C A+N +G  + +
Sbjct: 367 RVSSLTLKSIQYTDAGEYICTASNTIGQDSQS 398

This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc.

Mus musculus (taxid: 10090)

>sp|P13590|NCAM1_CHICK Neural cell adhesion molecule 1 OS=Gallus gallus GN=NCAM1 PE=1 SV=3

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 12/92 (13%)

Query: 97  PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSG-------- 148
           P+I YV     +E++    +TL C+A G+P+P+ITW     N+   E +  G        
Sbjct: 308 PKITYVENKTAMELED--QITLTCEASGDPIPSITWKTSTRNISNEEKTLDGRIVVRSHA 365

Query: 149 --NSLTVRHTNRHSAGIYLCVANNMVGSSAAA 178
             +SLT++      AG Y+C A+N +G  + A
Sbjct: 366 RVSSLTLKEIQYTDAGEYVCTASNTIGQDSQA 397

This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
242021179	454	limbic system-associated membrane protei	0.502	0.207	0.595	2e-25
242018223	500	limbic system-associated membrane protei	0.486	0.182	0.604	4e-24
170046865	412	conserved hypothetical protein [Culex qu	0.502	0.228	0.510	9e-23
161078695	566	CG34353, isoform A [Drosophila melanogas	0.502	0.166	0.5	9e-23
92109994	518	IP03437p [Drosophila melanogaster]	0.502	0.181	0.5	1e-22
115646189	244	IP03328p [Drosophila melanogaster]	0.502	0.385	0.5	2e-22
108743667	413	IP03330p [Drosophila melanogaster]	0.502	0.227	0.5	2e-22
390177133	443	GA30119 [Drosophila pseudoobscura pseudo	0.502	0.212	0.5	2e-22
195054965	227	GH16928 [Drosophila grimshawi] gi|193892	0.502	0.414	0.5	3e-22
270003591	207	hypothetical protein TcasGA2_TC002847 [T	0.502	0.454	0.553	5e-22

>gi|242021179|ref|XP_002431023.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis] gi|212516252|gb|EEB18285.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis]

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/94 (59%), Positives = 68/94 (72%)

Query: 92  EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSL 151
           E  +PPRI +V+  G VEVKKG +VTLEC+A GNPVP++ W+RKNN LP GE S  G+S+
Sbjct: 111 EILVPPRIHHVTSGGNVEVKKGQTVTLECRASGNPVPSVAWSRKNNVLPSGEKSREGSSI 170

Query: 152 TVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185
           T+    RH AG YLC A+N VG SA  SI LHVL
Sbjct: 171 TIEQATRHQAGTYLCTASNGVGDSAIQSINLHVL 204

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018223|ref|XP_002429579.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis] gi|212514537|gb|EEB16841.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis]

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 64/91 (70%)

Query: 95  IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVR 154
           +PPRI +VS  G +EVK+G SVTLEC+A GNPVP ITWTRKNN LP GE S  G S+T+ 
Sbjct: 129 VPPRIHHVSSQGVMEVKRGASVTLECRASGNPVPVITWTRKNNLLPSGEKSVEGYSITIE 188

Query: 155 HTNRHSAGIYLCVANNMVGSSAAASIALHVL 185
              RH AG+Y C A+N VG     SI LHVL
Sbjct: 189 QATRHQAGVYQCKASNGVGKPVEQSIVLHVL 219

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170046865|ref|XP_001850967.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167869473|gb|EDS32856.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 65/94 (69%)

Query: 92  EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSL 151
           EK++PP+I +V+  G ++V+KG  V LEC A GNP+PNITWTRKNN LP GE  ++ +  
Sbjct: 8   EKKVPPKITHVTSGGHLQVRKGSPVRLECSATGNPMPNITWTRKNNLLPNGEEQFTSSVY 67

Query: 152 TVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185
            + + +RH  G Y+C ANN VG  A + I LHVL
Sbjct: 68  VIENMDRHKGGTYICTANNGVGQVATSQIILHVL 101

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161078695|ref|NP_001097949.1| CG34353, isoform A [Drosophila melanogaster] gi|386766647|ref|NP_001247342.1| CG34353, isoform B [Drosophila melanogaster] gi|158030420|gb|ABW08787.1| CG34353, isoform A [Drosophila melanogaster] gi|383292993|gb|AFH06659.1| CG34353, isoform B [Drosophila melanogaster]

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 47/94 (50%), Positives = 66/94 (70%)

Query: 92  EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSL 151
           E  +PPRI ++S  G ++VKKG SV +EC A GNP+PN+TW+RKNN LP GE     + L
Sbjct: 177 EILVPPRIHHISTGGHLQVKKGSSVRIECSATGNPMPNVTWSRKNNILPNGEEKLHSHVL 236

Query: 152 TVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185
           ++ + +RH  G+Y+C ANN VG  A++ + LHVL
Sbjct: 237 SIENVDRHKGGVYICTANNRVGQPASSQVVLHVL 270

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|92109994|gb|ABE73321.1| IP03437p [Drosophila melanogaster]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 66/94 (70%)

Query: 92  EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSL 151
           E  +PPRI ++S  G ++VKKG SV +EC A GNP+PN+TW+RKNN LP GE     + L
Sbjct: 129 EILVPPRIHHISTGGHLQVKKGSSVRIECSATGNPMPNVTWSRKNNILPNGEEKLHSHVL 188

Query: 152 TVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185
           ++ + +RH  G+Y+C ANN VG  A++ + LHVL
Sbjct: 189 SIENVDRHKGGVYICTANNRVGQPASSQVVLHVL 222

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|115646189|gb|ABJ16969.1| IP03328p [Drosophila melanogaster]

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 66/94 (70%)

Query: 92  EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSL 151
           E  +PPRI ++S  G ++VKKG SV +EC A GNP+PN+TW+RKNN LP GE     + L
Sbjct: 11  EILVPPRIHHISTGGHLQVKKGSSVRIECSATGNPMPNVTWSRKNNILPNGEEKLHSHVL 70

Query: 152 TVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185
           ++ + +RH  G+Y+C ANN VG  A++ + LHVL
Sbjct: 71  SIENVDRHKGGVYICTANNRVGQPASSQVVLHVL 104

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|108743667|gb|ABG02142.1| IP03330p [Drosophila melanogaster]

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 66/94 (70%)

Query: 92  EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSL 151
           E  +PPRI ++S  G ++VKKG SV +EC A GNP+PN+TW+RKNN LP GE     + L
Sbjct: 11  EILVPPRIHHISTGGHLQVKKGSSVRIECSATGNPMPNVTWSRKNNILPNGEEKLHSHVL 70

Query: 152 TVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185
           ++ + +RH  G+Y+C ANN VG  A++ + LHVL
Sbjct: 71  SIENVDRHKGGVYICTANNRVGQPASSQVVLHVL 104

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390177133|ref|XP_003736282.1| GA30119 [Drosophila pseudoobscura pseudoobscura] gi|388858917|gb|EIM52355.1| GA30119 [Drosophila pseudoobscura pseudoobscura]

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 66/94 (70%)

Query: 92  EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSL 151
           E  +PPRI ++S  G ++VKKG SV +EC A GNP+PN+TW+RKNN LP GE     + L
Sbjct: 97  EILVPPRIHHISTGGHLQVKKGSSVRIECSATGNPMPNVTWSRKNNILPNGEEKLHSHVL 156

Query: 152 TVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185
           ++ + +RH  G+Y+C ANN VG  A++ + LHVL
Sbjct: 157 SIENVDRHKGGVYICTANNRVGQPASSQVVLHVL 190

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195054965|ref|XP_001994393.1| GH16928 [Drosophila grimshawi] gi|193892156|gb|EDV91022.1| GH16928 [Drosophila grimshawi]

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 65/94 (69%)

Query: 92  EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSL 151
           E  +PPRI ++S  G ++VKKG SV +EC A GNP PN+TW+RKNN LP GE     + L
Sbjct: 97  EILVPPRIHHISTGGHLQVKKGSSVRIECSASGNPTPNVTWSRKNNILPNGEEKLHSHVL 156

Query: 152 TVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185
           ++ + +RH  G+Y+C ANN VG  A++ + LHVL
Sbjct: 157 SIENVDRHKGGVYICTANNGVGQPASSQVVLHVL 190

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003591|gb|EFA00039.1| hypothetical protein TcasGA2_TC002847 [Tribolium castaneum]

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 63/94 (67%)

Query: 92  EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSL 151
           E  +PPRI YVS  G+VEVKKG SV LEC+A+GNP P ITW+RKNN LP G+ +     L
Sbjct: 80  EILVPPRINYVSSNGRVEVKKGSSVRLECRANGNPPPKITWSRKNNVLPSGDQTLVTPVL 139

Query: 152 TVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185
           T+   +RH AG+Y C A+N VG      I LHVL
Sbjct: 140 TLDKVDRHQAGVYKCTASNGVGQDVTQDINLHVL 173

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
FB|FBgn0017590	545	klg "klingon" [Drosophila mela	0.486	0.166	0.373	1.5e-12
FB|FBgn0037107	467	CG7166 [Drosophila melanogaste	0.481	0.192	0.384	1.4e-11
FB|FBgn0010238	359	Lac "Lachesin" [Drosophila mel	0.470	0.245	0.359	3.4e-10
ZFIN|ZDB-GENE-080204-42	396	zgc:172106 "zgc:172106" [Danio	0.454	0.214	0.355	2.4e-09
UNIPROTKB|F1ND63	1034	ADAMTSL3 "Uncharacterized prot	0.417	0.075	0.379	8e-09
UNIPROTKB|P82987	1691	ADAMTSL3 "ADAMTS-like protein	0.422	0.046	0.362	8.7e-09
UNIPROTKB|Q9BWV1	1114	BOC "Brother of CDO" [Homo sap	0.465	0.078	0.363	1.4e-08
UNIPROTKB|E1BB93	1115	BOC "Uncharacterized protein"	0.465	0.078	0.363	1.4e-08
UNIPROTKB|H9KZA3	5442	HMCN1 "Uncharacterized protein	0.385	0.013	0.424	1.5e-08
MGI|MGI:2677838	5100	Hmcn2 "hemicentin 2" [Mus musc	0.475	0.017	0.311	2.2e-08

FB|FBgn0017590 klg "klingon" [Drosophila melanogaster (taxid:7227)]

 Score = 176 (67.0 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 34/91 (37%), Positives = 50/91 (54%)

Query:    95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVR 154
             +PP +  +  +G+++ +KG  +TLECK  GNPVP+I WT+K+           G  LT+ 
Sbjct:   195 VPPSVRAIPTSGQLQARKGGPITLECKGSGNPVPSIYWTKKSGANKSTARIGDGPILTLE 254

Query:   155 HTNRHSAGIYLCVANNMVGSSAAASIALHVL 185
                R  AG+Y C A+N VG      + L VL
Sbjct:   255 KLERQQAGVYQCTADNGVGDPVTVDMRLDVL 285

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0007465 "R7 cell fate commitment" evidence=IGI

GO:0045466 "R7 cell differentiation" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0007611 "learning or memory" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0048149 "behavioral response to ethanol" evidence=IMP

GO:0007616 "long-term memory" evidence=IMP

GO:0007615 "anesthesia-resistant memory" evidence=IMP

FB|FBgn0037107 CG7166 [Drosophila melanogaster (taxid:7227)]

 Score = 166 (63.5 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 35/91 (38%), Positives = 52/91 (57%)

Query:    95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVR 154
             +PP +  +   G+V  +KG +VTLECKA GNPVP I W +K+    G  +    ++L + 
Sbjct:   133 VPPTLRALPHNGQVTARKGSTVTLECKASGNPVPTIFWFKKDV-FSGPTHLSDSSTLILE 191

Query:   155 HTNRHSAGIYLCVANNMVGSSAAASIALHVL 185
             + +RH AG Y C A+N V    +  I L +L
Sbjct:   192 NVDRHHAGTYQCSADNGVKDRVSMDIQLTIL 222

GO:0005576 "extracellular region" evidence=ISS

FB|FBgn0010238 Lac "Lachesin" [Drosophila melanogaster (taxid:7227)]

 Score = 151 (58.2 bits), Expect = 3.4e-10, P = 3.4e-10
 Identities = 32/89 (35%), Positives = 45/89 (50%)

Query:    97 PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNN-LPGGEYSYSGNSLTVRH 155
             P +I  +    V   +G  V +EC A G P P ITW R+NN  LP    +Y GN+L ++ 
Sbjct:   134 PPVISDNSTQSVVASEGSEVQMECYASGYPTPTITWRRENNAILPTDSATYVGNTLRIKS 193

Query:   156 TNRHSAGIYLCVANNMVGSSAAASIALHV 184
               +   G Y CVA+N V      +I + V
Sbjct:   194 VKKEDRGTYYCVADNGVSKGDRRNINVEV 222

GO:0007409 "axonogenesis" evidence=ISS

GO:0019898 "extrinsic to membrane" evidence=NAS

GO:0007424 "open tracheal system development" evidence=IEP;IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0035160 "maintenance of epithelial integrity, open tracheal system" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0005918 "septate junction" evidence=IDA

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP

GO:0019991 "septate junction assembly" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-080204-42 zgc:172106 "zgc:172106" [Danio rerio (taxid:7955)]

 Score = 144 (55.7 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 32/90 (35%), Positives = 48/90 (53%)

Query:    96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNP-VPNITWTRKNNNLPGGEYSYSGNSLTVR 154
             PP+ + VS +G   ++ G SVTL C +D NP   N TW ++N +   G    SG S ++ 
Sbjct:   211 PPKSVSVSVSGSAVIESGDSVTLSCSSDSNPPAVNFTWFKENQSSAVG----SGQSFSIS 266

Query:   155 HTNRHSAGIYLCVANNMVGSSAAASIALHV 184
               N   +G Y C A N  GS  + S+++ V
Sbjct:   267 SFNSSHSGQYYCEAENKYGSQRSESVSVTV 296

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1ND63 ADAMTSL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 145 (56.1 bits), Expect = 8.0e-09, P = 8.0e-09
 Identities = 30/79 (37%), Positives = 43/79 (54%)

Query:   106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYL 165
             G +  K G ++T+EC   G P PN+TW  K   L    +  S  SL +R+ +   AG Y 
Sbjct:   643 GTIVAKIGANITIECPVKGVPQPNVTWFMKKGILQINSFLLSNGSLFLRNVSYEDAGTYT 702

Query:   166 CVANNMVGSSAAASIALHV 184
             C A N +G + AAS+ LH+
Sbjct:   703 CRATNALGKAEAASV-LHL 720

GO:0008233 "peptidase activity" evidence=IEA

UNIPROTKB|P82987 ADAMTSL3 "ADAMTS-like protein 3" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 8.7e-09, P = 8.7e-09
 Identities = 29/80 (36%), Positives = 45/80 (56%)

Query:   106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYL 165
             G VE   G +VT+ C   G P PNITW ++  +L G        SL +++ +  + G Y+
Sbjct:  1307 GIVEAALGANVTIRCPVKGVPQPNITWLKRGGSLSGNVSLLFNGSLLLQNVSLENEGTYV 1366

Query:   166 CVANNMVGSSAAASIALHVL 185
             C+A N +G + A S+ LH+L
Sbjct:  1367 CIATNALGKAVATSV-LHLL 1385

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

UNIPROTKB|Q9BWV1 BOC "Brother of CDO" [Homo sapiens (taxid:9606)]

 Score = 143 (55.4 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 32/88 (36%), Positives = 49/88 (55%)

Query:    98 RIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG-GEYSYSGNSLTVRHT 156
             RIIY   A  + V KG S+ LEC A G P P +TW +  +++ G  +  +  ++L +  T
Sbjct:   230 RIIYPPEAQTIIVTKGQSLILECVASGIPPPRVTWAKDGSSVTGYNKTRFLLSNLLIDTT 289

Query:   157 NRHSAGIYLCVANNMVGSSAAASIALHV 184
             +   +G Y C+A+N VG   AA I  +V
Sbjct:   290 SEEDSGTYRCMADNGVGQPGAAVILYNV 317

GO:0007155 "cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0044295 "axonal growth cone" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045663 "positive regulation of myoblast differentiation" evidence=ISS

GO:0005886 "plasma membrane" evidence=TAS

GO:0042692 "muscle cell differentiation" evidence=TAS

GO:0051149 "positive regulation of muscle cell differentiation" evidence=TAS

UNIPROTKB|E1BB93 BOC "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 143 (55.4 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 32/88 (36%), Positives = 48/88 (54%)

Query:    98 RIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG-GEYSYSGNSLTVRHT 156
             RIIY   A  + V KG S+ LEC A G P P +TW +  +++    +  +  ++L +  T
Sbjct:   230 RIIYPPEAQTIVVTKGQSLILECVASGIPPPRVTWAKDGSSVASYNKTRFLLSNLLIDTT 289

Query:   157 NRHSAGIYLCVANNMVGSSAAASIALHV 184
             N   +G Y C+A+N VG   AA I  +V
Sbjct:   290 NEEDSGTYRCMADNGVGEPGAAVILYNV 317

GO:0045663 "positive regulation of myoblast differentiation" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

UNIPROTKB|H9KZA3 HMCN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 150 (57.9 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 31/73 (42%), Positives = 40/73 (54%)

Query:   106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNS-LTVRHTNRHSAGIY 164
             G V + KG  + L C+A G PVP ITWT  NN +P      SG+S L +   ++  +G Y
Sbjct:  4183 GDVTLTKGEQLRLACRASGIPVPKITWTFNNNVIPAQHDDVSGHSELVIERVSKDDSGTY 4242

Query:   165 LCVANNMVGSSAA 177
              C A N VGS  A
Sbjct:  4243 ACTAENAVGSIRA 4255

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

MGI|MGI:2677838 Hmcn2 "hemicentin 2" [Mus musculus (taxid:10090)]

 Score = 148 (57.2 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 29/93 (31%), Positives = 49/93 (52%)

Query:    95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWT---RKNNNLPGGEYSYSGNSL 151
             +PP+++   G G+V    G S+ L C+A G+PVP I W    R    L G + +  G  L
Sbjct:  1720 VPPQLLVAEGMGQVTATVGQSLDLPCQASGSPVPTIQWLQNGRPAEELAGVQLASQGTIL 1779

Query:   152 TVRHTNRHSAGIYLCVANNMVGSSAA-ASIALH 183
              + H   + +G++ C A N  G++ A   +++H
Sbjct:  1780 HISHVELNHSGLFACQATNEAGTAGAEVEVSVH 1812

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005604 "basement membrane" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0030054 "cell junction" evidence=IDA

GO:0050896 "response to stimulus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	187
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	4e-16
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	8e-14
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-13
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	3e-13
smart00410	85	smart00410, IG_like, Immunoglobulin like	7e-12
smart00409	85	smart00409, IG, Immunoglobulin	7e-12
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	2e-11
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	4e-11
cd00096	74	cd00096, Ig, Immunoglobulin domain	4e-11
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	2e-10
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	3e-10
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	5e-10
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	6e-10
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	1e-08
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	1e-08
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	2e-08
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	3e-08
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	6e-08
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	9e-08
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	1e-07
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	2e-07
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	2e-07
cd04979	89	cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like	3e-07
pfam00047	62	pfam00047, ig, Immunoglobulin domain	3e-07
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	3e-07
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	1e-06
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	2e-06
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	4e-06
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	4e-06
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	5e-06
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	5e-06
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	6e-06
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	1e-05
cd04977	92	cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig	1e-04
cd04974	90	cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like	2e-04
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	2e-04
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	4e-04
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	7e-04
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	7e-04
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	0.001
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	0.001
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	0.002
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	0.002
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	0.002
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	0.003
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	0.003
pfam05178	99	pfam05178, Kri1, KRI1-like family	0.003
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	0.003
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	0.004
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	0.004
cd05868	76	cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-lik	0.004
cd05740	91	cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-	0.004

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 68.6 bits (168), Expect = 4e-16
 Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNS-LTVRHTNRHSAGIYLCVANNM 171
           G SVTL C A+GNPVPNITW +    LP      +  S LT++  +   +G+Y CVA N 
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVAENS 61

Query: 172 VG 173
            G
Sbjct: 62  AG 63

Length = 63

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 63.2 bits (154), Expect = 8e-14
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 116 VTLECKADGNPVPNITWTRKNNNLPGGEYS-YSGNSLTVRHTNRHSAGIYLCVANNMVGS 174
           V  +C+  G+PVP + W +++  LP G        SL +R+      G Y C A NMVG 
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGK 60

Query: 175 SAAASI 180
             A++ 
Sbjct: 61  IEASAS 66

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 62.7 bits (153), Expect = 2e-13
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---YSYSGN--SLTVRHTNRHSAG 162
           VEV++G S    C   G+P P ++W +    L   +    +Y G   +LT+ +      G
Sbjct: 10  VEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEG 69

Query: 163 IYLCVANNMVGSSAAASIALHV 184
            Y CVA N  G  A AS  L V
Sbjct: 70  KYTCVATNSAG-EAEASAELTV 90

Length = 90

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 62.3 bits (151), Expect = 3e-13
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGE----YSYSGNSLTVRHTNRHSAGIYLCVA 168
           G SVTL C ADG P P +TWT+    +  GE    ++  G+ +T+   ++     Y C+A
Sbjct: 18  GQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIA 77

Query: 169 NNMVGSSAAASIALHVLCK 187
            N  G    A I L V  K
Sbjct: 78  ENKAGEQ-EAEIHLKVFAK 95

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 58.3 bits (141), Expect = 7e-12
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG------GEYSYSGNSLTVRHTNRH 159
             V VK+G SVTL C+A G+P P +TW ++   L           S S ++LT+ +    
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61

Query: 160 SAGIYLCVANNMVGSSAAASIALHV 184
            +G Y C A N  G SA++   L V
Sbjct: 62  DSGTYTCAATNSSG-SASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 58.3 bits (141), Expect = 7e-12
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG------GEYSYSGNSLTVRHTNRH 159
             V VK+G SVTL C+A G+P P +TW ++   L           S S ++LT+ +    
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61

Query: 160 SAGIYLCVANNMVGSSAAASIALHV 184
            +G Y C A N  G SA++   L V
Sbjct: 62  DSGTYTCAATNSSG-SASSGTTLTV 85

Length = 85

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 57.7 bits (139), Expect = 2e-11
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 12/92 (13%)

Query: 97  PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGN------- 149
           P+I YV     +E+++   +TL C+A G+P+P+ITW     N+   E +  G+       
Sbjct: 3   PKITYVENQTAMELEE--QITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHA 60

Query: 150 ---SLTVRHTNRHSAGIYLCVANNMVGSSAAA 178
              SLT+++     AG YLC A+N +G  + +
Sbjct: 61  RVSSLTLKYIQYTDAGEYLCTASNTIGQDSQS 92

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 56.8 bits (137), Expect = 4e-11
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 13/87 (14%)

Query: 97  PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGN------- 149
           P+I Y+     VE+++   +TL C+A+G+P+P ITW R   N   G+ S  G        
Sbjct: 3   PKITYLENQTAVELEQ---ITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHA 59

Query: 150 ---SLTVRHTNRHSAGIYLCVANNMVG 173
              SLT++      AG Y C A+N +G
Sbjct: 60  RVSSLTLKDVQLTDAGRYDCEASNRIG 86

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 56.0 bits (134), Expect = 4e-11
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 9/68 (13%)

Query: 116 VTLECKADGNPVPNITWTRKNNNLPGGEY--------SYSGNS-LTVRHTNRHSAGIYLC 166
           VTL C A G P P ITW +    LP            + SG+S LT+ +     +G Y C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 167 VANNMVGS 174
           VA+N  G+
Sbjct: 61  VASNSAGT 68

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 54.4 bits (131), Expect = 2e-10
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCV 167
             V +G  VTL C A GNP PN TW +    L       S N     + +   +G Y CV
Sbjct: 9   TVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLS-----SSQNGFFTPNVSAEDSGTYTCV 63

Query: 168 ANNMVGSSAAASIALHV 184
           A+N  G   +  + L V
Sbjct: 64  ASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 54.1 bits (130), Expect = 3e-10
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 107 KVEVKKGYSVTLECKA-DGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYL 165
             EV+ G  V+  C+A   +P   + WTR    LP     ++G  LT+R+     AG Y+
Sbjct: 10  SQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNG-ILTIRNVQLSDAGTYV 68

Query: 166 CVANNMVGSSAAASIALH 183
           C  +NM   +  A+  L+
Sbjct: 69  CTGSNM-LDTDEATATLY 85

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 53.5 bits (128), Expect = 5e-10
 Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 112 KGYSVTLECKADGNPVPNITWTRKNNNLPG-GEYSYSGNSLTVRHTNRHSAGIYLCVANN 170
           KG +VTLEC A GNPVP I W +    +P   E S SG  L + +      G Y C A N
Sbjct: 15  KGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAEN 74

Query: 171 MVG 173
           + G
Sbjct: 75  IKG 77

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 53.2 bits (128), Expect = 6e-10
 Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 112 KGYSVTLECKADGNPVPNITWTRKNNNLPG-GEYSYSGNSLTVRHTNRHSAGIYLCVANN 170
           KG +VTLEC A GNPVP I W + + ++P   E S SG  L + +      G Y C A N
Sbjct: 15  KGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAEN 74

Query: 171 MVG 173
           + G
Sbjct: 75  IKG 77

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 24/106 (22%)

Query: 96  PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITW--------TRKNNN------LPG 141
           PPRI  V     + V KG   TL CKA+G P P I W        T K++       LP 
Sbjct: 1   PPRI--VEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPS 58

Query: 142 GEYSYSGNSLTVRHTNRHS---AGIYLCVANNMVGSSAAASIALHV 184
           G   +    L V H  R      G+Y+CVA+N +G + + + +L V
Sbjct: 59  GSLFF----LRVVH-GRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 116 VTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSA--GIYLCVANNMVG 173
           + LEC A+G P P I+W +    LP     +   + T++  N      G Y C A+N +G
Sbjct: 1   LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLG 60

Query: 174 SS 175
           S+
Sbjct: 61  SA 62

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 116 VTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNS----LTVRHTNRHSAGIYLCVANNM 171
           VTL C  DG+P P   W R    L  G+ +YS +S    LT+R      +G+Y C A+N 
Sbjct: 1   VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60

Query: 172 VGS 174
            GS
Sbjct: 61  FGS 63

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 108 VEVKKGYSVTLECKAD-GNPVPNITWTRKN----NNLPGGEYSYSGNSLTVRHTNRHSAG 162
            +V  G    LEC    G+P P ++W RK+    N            +L +    +   G
Sbjct: 6   TQVAVGEMAVLECSPPRGHPEPTVSW-RKDGQPLNLDNERVRIVDDGNLLIAEARKSDEG 64

Query: 163 IYLCVANNMVGS--SAAA 178
            Y CVA NMVG   SAAA
Sbjct: 65  TYKCVATNMVGERESAAA 82

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 47.6 bits (113), Expect = 6e-08
 Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 116 VTLECKADGNPVPNITWTRKNNN----------LPGGEYSYSGNSLTVRHTNRHSAGIYL 165
           VTL C A+G P P I W                L G     S  SL ++H     +G YL
Sbjct: 1   VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYL 60

Query: 166 CVANNMVGSSAAASIALHV 184
           C  +N VG+ A+ S+ L V
Sbjct: 61  CKVSNDVGADASKSMVLTV 79

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 47.0 bits (111), Expect = 9e-08
 Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 96  PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP-NITWTRKNNNLPGGEYSYSGNS-LTV 153
            P I          V  G  VTL C A+G P P  I+W R  +   G     S  S LT+
Sbjct: 1   KPVITVSPSP---SVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTL 57

Query: 154 RHTNRHSAGIYLCVANN 170
                  +G Y CVA+N
Sbjct: 58  SSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 113 GYSVTLECKADGNPVPNITWTRKNNNL-----PGGEYSYSGNSLTVRHTNRHSAGIYLCV 167
           G +  L+C+A+G P P ITW R N        P       G +L + +   +   +Y C 
Sbjct: 1   GETGRLDCEAEGIPQPTITW-RLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCN 59

Query: 168 ANNMVGSSAAASIALHVL 185
           A+N V     A+  +HV+
Sbjct: 60  ASN-VHGYLLANAFVHVV 76

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 116 VTLECKADGNPVPNITWTRKNNN---LPGGEYSYSGNSLTVRH-TNRHSAGIYLCVANNM 171
           V+L C+A G+P P   W          P   YS  G +L + + +    AG Y C+A+N+
Sbjct: 22  VSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNI 81

Query: 172 VGS 174
           VG+
Sbjct: 82  VGT 84

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 46.1 bits (109), Expect = 2e-07
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 112 KGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS--YSGNSLTVRHTNRHSAGIYLCVAN 169
           +G +V   C+A G P P I WT+  + L         S  +L +     H  G Y C A 
Sbjct: 1   EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAV 60

Query: 170 NMVGS 174
           N+VGS
Sbjct: 61  NIVGS 65

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of semaphorin

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSG-----NSLTVRHTNRHSA 161
            V V +G SV LEC    N    + W  +   L   E          + L +R  +   A
Sbjct: 5   VVTVVEGNSVFLECSPKSNLAS-VVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADA 63

Query: 162 GIYLCVANNMVGSSAAASIALHVL 185
           G+Y C +         A+ +L+VL
Sbjct: 64  GVYTCQSVEHGFKQTLATYSLNVL 87

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. Length = 89

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 45.6 bits (108), Expect = 3e-07
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGG------EYSYSGNSLTVRHTNRHSAGIYLCVA 168
           SVTL C   G P  ++TW ++   L         E   S  +LT+ +     +G Y CV 
Sbjct: 3   SVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 113 GYSVTLECKADGNPVPNITWT------RKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLC 166
           G +V L+C A GNP P ITW       +K + + G +      +L +       +G Y C
Sbjct: 9   GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTC 68

Query: 167 VANNMVGS 174
           +  N  GS
Sbjct: 69  IVENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPG-GEYSYSGNSLTVRHTNRHSAGIYLCV 167
           E   G S+  ECKA GNP P   W +    L            L +   +   +G+Y CV
Sbjct: 10  EADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCV 69

Query: 168 ANNMVGSSAAAS 179
           A N  G+  A++
Sbjct: 70  AENKHGTIYASA 81

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGE---YSYSGNSLTVRHTNRHSAGIYLCVAN 169
           G   TL CKA G+P P I W   +  L         Y   +L +  T     G + C+A+
Sbjct: 1   GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIAS 60

Query: 170 NMVGSSAAASIALHV 184
           N  G  A A++ LH+
Sbjct: 61  NAAG-EATATVELHI 74

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 10/72 (13%)

Query: 113 GYSVTLECKADGNPVPNITWTRK-NNNL--------PGGEYSYS-GNSLTVRHTNRHSAG 162
           G +VT +C+A GNP P I W ++ + NL            +S S    LT+ +  R   G
Sbjct: 1   GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG 60

Query: 163 IYLCVANNMVGS 174
            Y+C   N+ GS
Sbjct: 61  YYICQTLNVAGS 72

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 43.0 bits (101), Expect = 4e-06
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 116 VTLECKADGNPVPNITWTRKNNNLP-GGEYSYS---GNSLTVRHTNRHSAGIYLCVANNM 171
           V L C+A GNPVP   W R    +    +Y YS   GN +    +    +G Y C+A N 
Sbjct: 22  VILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNS 81

Query: 172 VGS 174
           +GS
Sbjct: 82  IGS 84

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 116 VTLECKADGNPVPNITWTRKNN---NLPGGEYSYSGNSLTVRHTNRH-SAGIYLCVANNM 171
           V++ C+A  NP P   W RKNN   +L    YS  G +L + + +++  AG Y+C+ +N+
Sbjct: 22  VSVNCRARANPFPIYKW-RKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNI 80

Query: 172 VG 173
            G
Sbjct: 81  YG 82

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 42.5 bits (100), Expect = 5e-06
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLP---GGEYSYSGNSLTVRHTNRHSAGIYLCVAN 169
           G SV L+C A GNP P+ITW + N  L     GE      +L++++     +G Y C  +
Sbjct: 9   GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVS 68

Query: 170 NMVG 173
           N  G
Sbjct: 69  NRAG 72

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 42.2 bits (99), Expect = 6e-06
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 116 VTLECKADGNPVPNITWTRKNNNLP--GGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVG 173
           + LEC A+G P P + W R +  L     +   +  +L + +      G Y+C A N  G
Sbjct: 1   LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEG 60

Query: 174 S 174
           S
Sbjct: 61  S 61

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 116 VTLECKADGNPVPNITWTRKNNNLP-GGEYSYS-GNSLTVRHTNRHSAGIYLCVANNMVG 173
           V + C A G+P P ITW +    +   G++  S    L +R       G Y CVA N +G
Sbjct: 1   VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIG 60

Query: 174 SSAAA 178
            ++ +
Sbjct: 61  YASVS 65

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143178 cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNN--LPGGEYSYSGN-----SLTVRHTNRH 159
           + E+  G S    C+  G P  +I+W   N    +   + S   N     +LT+ + N  
Sbjct: 9   QGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIE 67

Query: 160 SAGIYLCVANNMVGSSAAASIALHV 184
            AGIY CVA +  G+ + A++ L +
Sbjct: 68  DAGIYKCVATDAKGTESEATVNLKI 92

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 92

>gnl|CDD|143175 cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 21/92 (22%)

Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNS-------------------LTV 153
           G  V   CK   +  P+I W  K+  + G +Y   G                     L +
Sbjct: 1   GSDVEFHCKVYSDAQPHIQWL-KHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYL 59

Query: 154 RHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185
           R+ +   AG Y C+A N +G S   S  L VL
Sbjct: 60  RNVSFDDAGEYTCLAGNSIGPS-HHSAWLTVL 90

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. Length = 90

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 15/91 (16%)

Query: 95  IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNL--------PGGEYSY 146
           + P II +     VE     + TL CKA+G P+P ITW R ++          P G    
Sbjct: 1   VQPHIIQLKNETTVE---NGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEV 57

Query: 147 SG----NSLTVRHTNRHSAGIYLCVANNMVG 173
            G    +SL ++      +G Y C A + +G
Sbjct: 58  KGQHGESSLHIKDVKLSDSGRYDCEAASRIG 88

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 37.1 bits (86), Expect = 4e-04
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 16/75 (21%)

Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEY------SYSGN-------SLTVRHTNRH 159
           G + +  C   G P P ITW ++   + G E          GN        L + +    
Sbjct: 1   GETASFHCDVTGRPPPEITWEKQ---VHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQ 57

Query: 160 SAGIYLCVANNMVGS 174
            AG+Y C A N  G 
Sbjct: 58  DAGLYTCTARNSGGL 72

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 36.7 bits (85), Expect = 7e-04
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLP-GGEYSYSGN-SLTVRHTNRHSAGIYLCVANN 170
           G  V +ECK    P P I+W++    L          + SL + +  +   G Y C A N
Sbjct: 1   GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAEN 60

Query: 171 MVGSSAAASIA 181
             G   A S  
Sbjct: 61  FFGK--ANSTG 69

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 36.5 bits (84), Expect = 7e-04
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 116 VTLECKADGNPVPNITWTRKNNNLPGGEY--SYSGNSLTVRHTNRHSAGIYLCVANNMVG 173
           +  EC+  G P P + W +  + +   +Y      ++L V    +   G Y C+A N VG
Sbjct: 2   IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG 61

Query: 174 SSAAAS 179
           +  A +
Sbjct: 62  NVQAGA 67

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 116 VTLECKADGNPVPNITWTRKNNNL---PGGEYSYSGNSLTVRH-TNRHSAGIYLCVANNM 171
           VTL C+A  +P     W      +   P   Y+    +L + +      AG Y C+A N 
Sbjct: 22  VTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINR 81

Query: 172 VGS 174
            G+
Sbjct: 82  CGT 84

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 13/25 (52%), Positives = 21/25 (84%)

Query: 70  KEEEERKKKKKRKKRKKKKKKKEKR 94
           K EE++ +K+K+KK++KKK KK K+
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKK 410

Length = 414

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 12/25 (48%), Positives = 22/25 (88%)

Query: 70  KEEEERKKKKKRKKRKKKKKKKEKR 94
           K+ EE+K +K++KK+K+KKK K+++
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKKRK 409

Length = 414

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 16/26 (61%), Positives = 23/26 (88%)

Query: 69  EKEEEERKKKKKRKKRKKKKKKKEKR 94
           EK+ ++RKKKKKRKK+ KK+KKK ++
Sbjct: 389 EKKPQKRKKKKKRKKKGKKRKKKGRK 414

Length = 414

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 117 TLECKADGNPVPNITWTRK----NNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMV 172
           T+ C A GNP P ITW +     +    G        +L + ++     G Y CVA N  
Sbjct: 2   TMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSA 61

Query: 173 GSSAAASIALHV 184
           G+  +A   L+V
Sbjct: 62  GTRYSAPANLYV 73

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 12/26 (46%), Positives = 22/26 (84%)

Query: 69  EKEEEERKKKKKRKKRKKKKKKKEKR 94
            +E++ +K+KKK+K++KK KK+K+K 
Sbjct: 387 REEKKPQKRKKKKKRKKKGKKRKKKG 412

Length = 414

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 14/26 (53%), Positives = 24/26 (92%)

Query: 69  EKEEEERKKKKKRKKRKKKKKKKEKR 94
           ++EE++ +K+KK+KKRKKK KK++K+
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKK 411

Length = 414

>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 9/24 (37%), Positives = 18/24 (75%)

Query: 69 EKEEEERKKKKKRKKRKKKKKKKE 92
          E++EEE+ ++++  KR K  K++E
Sbjct: 2  ERKEEEKAQREEELKRLKNLKREE 25

The yeast member of this family (Kri1p) is found to be required for 40S ribosome biogenesis in the nucleolus. Length = 99

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 34.9 bits (80), Expect = 0.003
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 117 TLECKADGNPVPNITWTRK----NNNLPGGEYSYSGNSLTVRHTNRHSA--GIYLCVANN 170
           +L C A+G P+P +TW +        L   + +   N   +  +N      G Y C+A N
Sbjct: 2   SLRCHAEGIPLPRLTWLKNGMDITPKLS-KQLTLIANGSELHISNVRYEDTGAYTCIAKN 60

Query: 171 MVG 173
             G
Sbjct: 61  EAG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 110 VKKGYSVTLECKADGNPVPNITWTRK 135
           V +G S    C  DG P P +TW R+
Sbjct: 15  VSEGESARFSCDVDGEPAPTVTWMRE 40

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 66  LAMEKEEEERKKKKKR-KKRKKKKKKKEKRIPP 97
           LA   E++E++K+K + KKR +  K   KR  P
Sbjct: 396 LAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKP 428

Length = 434

>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

 Score = 34.6 bits (79), Expect = 0.004
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 117 TLECKADGNPVPNITWTRKNNNLP------GGEYSYSGNSLTVRHTNRHSAGIYLCVANN 170
           TL C+A+GNP P+I+W    N +P             G+++        S+ +Y C A+N
Sbjct: 5   TLICRANGNPKPSISWL--TNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASN 62

Query: 171 MVG 173
             G
Sbjct: 63  EYG 65

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 76

>gnl|CDD|143217 cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

 Score = 34.6 bits (79), Expect = 0.004
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGN--SLTVRHTNRHSAGI 163
           G    +    VTL C+A+G     I W    + L       S +  +LT  +  R   G 
Sbjct: 11  GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGH 69

Query: 164 YLCVANNMVGSSAAASIALHVL 185
           Y C A+N V +  +    L+V 
Sbjct: 70  YQCEASNEVSNMTSDPYILNVN 91

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D4 Ig-like domain. Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
KOG3513|consensus	1051		99.85
KOG3513|consensus	1051		99.85
KOG4194|consensus	873		99.77
PHA02826	227	IL-1 receptor-like protein; Provisional	99.76
KOG4222|consensus	1281		99.76
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.76
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.73
KOG4221|consensus	1381		99.73
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.73
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.73
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.73
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.73
PHA02785	326	IL-beta-binding protein; Provisional	99.72
KOG4221|consensus	1381		99.72
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.72
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.71
PHA02785	326	IL-beta-binding protein; Provisional	99.7
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.7
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.7
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.69
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.69
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.69
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.69
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.68
KOG4194|consensus	873		99.68
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.68
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.67
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.67
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.66
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.66
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.66
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.65
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.65
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.65
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.65
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.64
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.64
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.64
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.64
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.64
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.64
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.64
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.64
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.64
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.63
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.63
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.63
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.62
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.62
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.62
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.62
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.62
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.62
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.62
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.61
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.61
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.61
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.6
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.6
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.59
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.59
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.59
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.59
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.59
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.59
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.58
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.58
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.58
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.58
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.57
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.57
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.56
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.56
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.55
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.55
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.54
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.54
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.53
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.52
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.51
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.51
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.5
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.5
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.5
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.49
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.47
KOG4222|consensus	1281		99.47
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.47
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.47
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.45
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.42
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.41
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.4
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.39
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.37
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.37
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.33
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.33
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.32
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.3
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.29
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.25
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.25
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.24
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.21
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.18
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.16
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.13
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.12
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.1
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.06
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.06
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.04
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.01
smart00409	86	IG Immunoglobulin.	99.01
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.99
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.99
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.95
PHA02826	227	IL-1 receptor-like protein; Provisional	98.93
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.92
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.92
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.91
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.91
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.87
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.85
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.81
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	98.8
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.8
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.8
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.79
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.79
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.77
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.77
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.76
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.68
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.68
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.67
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.65
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	98.64
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.63
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	98.63
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.63
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.63
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.62
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.62
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.62
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.6
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.59
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.59
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.58
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.58
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.56
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.56
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.56
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.55
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.55
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.53
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.53
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.52
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.51
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.49
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.48
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.48
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.47
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.47
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.47
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.46
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.46
PHA03376	221	BARF1; Provisional	98.44
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.44
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.43
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.43
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.41
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.4
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.39
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	98.38
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.38
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.38
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.35
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.34
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.34
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.33
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.33
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.32
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.31
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.3
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.3
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.28
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.28
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.28
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.28
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.25
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.24
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.24
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.24
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.23
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.23
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.22
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.2
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.2
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.18
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.18
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.18
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.18
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.17
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.17
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.17
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.17
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.16
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.12
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.12
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.1
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.09
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.09
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.09
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.04
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.04
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.97
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.95
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	97.94
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	97.94
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	97.94
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	97.91
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.9
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	97.87
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	97.85
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	97.84
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	97.83
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.79
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	97.79
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	97.79
KOG3515|consensus	741		97.79
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	97.78
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.77
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	97.77
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.75
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.75
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.74
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	97.72
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	97.71
smart00407	75	IGc1 Immunoglobulin C-Type.	97.71
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	97.7
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	97.68
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	97.67
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.67
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	97.64
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.63
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	97.61
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	97.59
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	97.57
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	97.54
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	97.52
KOG1480|consensus	909		97.5
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	97.5
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	97.5
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	97.49
KOG3515|consensus	741		97.45
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.36
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.35
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	97.33
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.32
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	97.3
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	97.29
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.28
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.27
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.27
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	97.26
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	97.25
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.25
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.24
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.21
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	97.19
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.18
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	97.17
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.15
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.14
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.13
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.13
PHA02633	63	hypothetical protein; Provisional	97.09
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.09
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	97.08
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.07
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	97.05
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	97.02
smart00406	81	IGv Immunoglobulin V-Type.	97.0
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.0
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	97.0
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.97
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	96.92
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	96.88
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	96.87
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	96.8
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	96.75
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	96.69
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.68
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	96.68
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	96.68
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	96.66
smart00408	63	IGc2 Immunoglobulin C-2 Type.	96.61
PHA03376	221	BARF1; Provisional	96.6
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	96.52
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	96.44
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.36
KOG4597|consensus	560		96.22
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	96.22
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	96.21
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	96.11
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.1
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.04
PHA03270	466	envelope glycoprotein C; Provisional	96.02
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	95.98
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	95.95
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	95.91
smart00409	86	IG Immunoglobulin.	95.91
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	95.87
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	95.84
PF00047	64	ig: Immunoglobulin domain The Prosite family only	95.84
PHA02633	63	hypothetical protein; Provisional	95.79
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	95.78
PHA03269	566	envelope glycoprotein C; Provisional	95.72
PHA03271	490	envelope glycoprotein C; Provisional	95.66
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	95.53
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.41
PHA03273	486	envelope glycoprotein C; Provisional	95.35
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	95.31
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	95.25
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	95.23
PHA03042	286	CD47-like protein; Provisional	95.1
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.02
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	94.96
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	94.77
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	94.32
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	94.19
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	94.14
smart00407	75	IGc1 Immunoglobulin C-Type.	93.87
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	93.8
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	93.61
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	93.25
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	93.15
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	92.99
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	92.34
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	91.43
cd05770	93	IgC_beta2m Class I major histocompatibility comple	91.34
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	91.29
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	91.26
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	91.13
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	91.07
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	91.04
PHA03270	466	envelope glycoprotein C; Provisional	90.86
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	90.47
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	90.17
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	89.99
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	89.51
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	89.03
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	88.71
smart00406	81	IGv Immunoglobulin V-Type.	88.44
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	88.15
PHA03269	566	envelope glycoprotein C; Provisional	85.56
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	85.11
KOG0613|consensus	1205		84.91
PHA03052	69	Hypothetical protein; Provisional	83.52
PHA02865	338	MHC-like TNF binding protein; Provisional	82.64
PHA03271	490	envelope glycoprotein C; Provisional	82.25
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	81.69

>KOG3513|consensus

Probab=99.85  E-value=1e-19  Score=143.14  Aligned_cols=120  Identities=22%  Similarity=0.357  Sum_probs=98.2

Q ss_pred             EEEEEecccceeEE--eeccceeeEEEEEEEEc-CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeC-C
Q psy15738         65 ILAMEKEEEERKKK--KKRKKRKKKKKKKEKRI-PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNL-P  140 (187)
Q Consensus        65 ~~~v~~~d~g~y~c--~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~-~  140 (187)
                      +..++..|+|.|.|  .+..+.....+.|.|.. +|.+..........+..|..+.+.|...+.|.|.+.|.+++..+ .
T Consensus       390 is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~  469 (1051)
T KOG3513|consen  390 ISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQ  469 (1051)
T ss_pred             EEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCccccc
Confidence            78899999999999  55677777888999874 47665444333456778999999999999999999999998844 4


Q ss_pred             CCcEEE-eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        141 GGEYSY-SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       141 ~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      .+++.. .+++|.|.+++++|+|.|+|.|.|..|.. .....|.|.
T Consensus       470 ~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a-~~~~~L~Vk  514 (1051)
T KOG3513|consen  470 SGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKA-ESTGNLIVK  514 (1051)
T ss_pred             CceEEECCCCcEEecccCcccCcEEEEEEEcccCcc-ceEEEEEEe
Confidence            444443 67999999999999999999999999999 478888764

>KOG3513|consensus

Probab=99.85  E-value=7.1e-20  Score=143.95  Aligned_cols=147  Identities=23%  Similarity=0.380  Sum_probs=106.3

Q ss_pred             cCCCCeeEEEeC-e-EeeeccEEEeeccccccceeEEEEEecccceeEE--eeccceeeEEEEEEEEcCCeeEEecCCce
Q psy15738         32 DSRPESTFWIFG-K-LITSCSYIILATSLLHYLSYILAMEKEEEERKKK--KKRKKRKKKKKKKEKRIPPRIIYVSGAGK  107 (187)
Q Consensus        32 ~~~~~~~~w~~~-~-~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c--~~~~~~~~~~~~l~v~~~p~~~~~~~~~~  107 (187)
                      ..+.....|+++ + .+-..++.+..++.+.    |.+++.+|+|.|+|  .+..++...++.|.|..++++..  .+..
T Consensus       452 asP~p~~~W~k~~~~~~~~~r~~i~edGtL~----I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~--~P~~  525 (1051)
T KOG3513|consen  452 ASPKPKVSWLKGGEKLLQSGRIRILEDGTLE----ISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITL--APSN  525 (1051)
T ss_pred             CCCcceEEEEcCCcccccCceEEECCCCcEE----ecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEe--ccch
Confidence            333344444433 1 2224444555555555    89999999999999  55567778889999999999864  4556


Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCC----cEEEeC----cEEEEecCCCCCCeEEEEEEecCCCCcce
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKNNNLPGG----EYSYSG----NSLTVRHTNRHSAGIYLCVANNMVGSSAA  177 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~----~~~~~~----~~l~i~~~~~~d~g~y~C~~~n~~g~~~s  177 (187)
                      ..+..|+.+.|+|.+...+..  .+.|.++|.++...    .+....    +.|+|.++...|+|.|.|.|.....+. +
T Consensus       526 ~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~-s  604 (1051)
T KOG3513|consen  526 TDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSA-S  604 (1051)
T ss_pred             hhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecch-h
Confidence            778899999999999776654  68899999876322    222222    459999999999999999999877666 5


Q ss_pred             eeEEEEEE
Q psy15738        178 ASIALHVL  185 (187)
Q Consensus       178 ~~~~l~v~  185 (187)
                      ..+.|.|.
T Consensus       605 ~~A~l~V~  612 (1051)
T KOG3513|consen  605 ARADLLVR  612 (1051)
T ss_pred             cccceEEe
Confidence            66666654

>KOG4194|consensus

Probab=99.77  E-value=5.2e-18  Score=126.32  Aligned_cols=119  Identities=23%  Similarity=0.407  Sum_probs=100.2

Q ss_pred             EEEEEecccceeEEeec---cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCee-CC
Q psy15738         65 ILAMEKEEEERKKKKKR---KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNN-LP  140 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~-~~  140 (187)
                      +-+|+..|.|.|.|+.+   +..-+..++|+|...|.+.  ..|..+.+..|..+.|.|.+.|.|.|+|.|.++|.. .+
T Consensus       578 L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFt--ktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFP  655 (873)
T KOG4194|consen  578 LDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFT--KTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFP  655 (873)
T ss_pred             eeeeecccCceEEEEEecccCcchhheeEEEeeccCccc--cCcccceeecccceeeeeeccCCCCcceeehhcCCCCCc
Confidence            56899999999999444   5666788999999999994  556678899999999999999999999999999876 44


Q ss_pred             CCcE----E-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        141 GGEY----S-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       141 ~~~~----~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      ..+.    . .......|.+++.+|.|.|+|.|.|.+|+. +.+++|.|+-
T Consensus       656 AA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~i-sanAtL~V~e  705 (873)
T KOG4194|consen  656 AARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQI-SANATLTVLE  705 (873)
T ss_pred             hhhhheeeecCCCCEEEEecccccccceeEEeeeccccce-eeceEEEEec
Confidence            3321    1 135678999999999999999999999999 6999999863

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.76  E-value=7.5e-17  Score=110.30  Aligned_cols=106  Identities=13%  Similarity=0.133  Sum_probs=78.1

Q ss_pred             cceeEEEEEecccceeEEeec--cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEecc-----CCCCcEEEE
Q psy15738         61 YLSYILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADG-----NPVPNITWT  133 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-----~p~p~~~W~  133 (187)
                      ...+|..++.+|+|.|+|.+.  .......+.|.|..++        ....+.+|+.+.|.|.+.+     .|.|.+.|+
T Consensus        98 ~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~--------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~Wy  169 (227)
T PHA02826         98 ENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGT--------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWY  169 (227)
T ss_pred             CeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCC--------ccceEecCCCEEEEeeCCCCccccCCCceEEEE
Confidence            345589999999999999444  3334555666664222        1245678999999999853     457899999


Q ss_pred             eCCeeCCCCc-EEE--eCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        134 RKNNNLPGGE-YSY--SGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       134 ~~~~~~~~~~-~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      +++.++.... ...  ..+.|.|.++..+|+|.|.|.|....+.
T Consensus       170 Kng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~g  213 (227)
T PHA02826        170 KNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKNS  213 (227)
T ss_pred             ECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeECC
Confidence            9999875443 222  3468999999999999999999987544

>KOG4222|consensus

Probab=99.76  E-value=8.6e-18  Score=132.06  Aligned_cols=128  Identities=23%  Similarity=0.439  Sum_probs=107.5

Q ss_pred             EEeeccccccceeEEEEEecccceeEEeec---cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCC
Q psy15738         52 IILATSLLHYLSYILAMEKEEEERKKKKKR---KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP  128 (187)
Q Consensus        52 ~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p  128 (187)
                      .+...+.+.    |.+++.+|.|.|.|++.   +...+..+.|.|..+|.+.  ..+..+.+..|.++.+.|.+.|.|.|
T Consensus       182 ~lisgG~Ll----IsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~--~rp~~~~v~~g~~~~f~c~v~GdP~P  255 (1281)
T KOG4222|consen  182 ALISGGNLL----ISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFW--KRPKDLAVLVGAAAEFDCRVGGDPQP  255 (1281)
T ss_pred             EEecCCcEE----EeccccCCCceeeeeecccccccccccceeeeccCCccc--cccccceeecccccccccccCCCCCC
Confidence            334445666    99999999999999665   6677788999999999984  55666788899999999999999999


Q ss_pred             cEEEEeCCeeCCCCcEEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        129 NITWTRKNNNLPGGEYSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       129 ~~~W~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .+.|.+++..++-.++..  ...+|.+.++...|.|.|.|.+.|.+|.. .....|+|+.
T Consensus       256 ~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l-~asa~ltV~a  314 (1281)
T KOG4222|consen  256 TVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGL-EASATLTVQA  314 (1281)
T ss_pred             ceeeeccCCCCCccceeeeeccccccccccCCCcccceeeecccccccc-ccccceEEec
Confidence            999999888877776643  34789999999999999999999999998 5888888864

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.76  E-value=2.7e-17  Score=96.68  Aligned_cols=79  Identities=34%  Similarity=0.515  Sum_probs=66.8

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ...+..|.|.++..+|.|.|.|.|.|..|.. +..+.|.
T Consensus         8 ~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~   86 (88)
T cd05851           8 FKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKD-KHQARVY   86 (88)
T ss_pred             cccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCce-EEEEEEE
Confidence            3456788999999999999999999999999887755432 2345689999999999999999999999998 5788877


Q ss_pred             E
Q psy15738        184 V  184 (187)
Q Consensus       184 v  184 (187)
                      |
T Consensus        87 V   87 (88)
T cd05851          87 V   87 (88)
T ss_pred             E
Confidence            6

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.73  E-value=9.3e-17  Score=94.81  Aligned_cols=83  Identities=25%  Similarity=0.412  Sum_probs=70.1

Q ss_pred             ecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceee
Q psy15738        102 VSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAAS  179 (187)
Q Consensus       102 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~  179 (187)
                      ...++.+.+.+|+++.|.|.+.|. .|.+.|++++..+...+...  ..+.|.|.++..+|.|.|.|.|.|..|...+.+
T Consensus         7 ~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~   85 (91)
T cd05740           7 NNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDP   85 (91)
T ss_pred             ccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeee
Confidence            344456788999999999999999 99999999998876554332  346899999999999999999999999987888


Q ss_pred             EEEEEE
Q psy15738        180 IALHVL  185 (187)
Q Consensus       180 ~~l~v~  185 (187)
                      +.|.|+
T Consensus        86 ~~L~V~   91 (91)
T cd05740          86 YILNVN   91 (91)
T ss_pred             EEEEeC
Confidence            888874

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>KOG4221|consensus

Probab=99.73  E-value=2e-17  Score=130.73  Aligned_cols=151  Identities=19%  Similarity=0.391  Sum_probs=116.7

Q ss_pred             ceEEccCCCCeeEEEeC-eEeeec--cEEEeeccccccceeEEEEEecccceeEEeecc--ceeeEEEEEEEEcCCeeEE
Q psy15738         27 AIMFADSRPESTFWIFG-KLITSC--SYIILATSLLHYLSYILAMEKEEEERKKKKKRK--KRKKKKKKKEKRIPPRIIY  101 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~~-~~~~~~--~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~--~~~~~~~~l~v~~~p~~~~  101 (187)
                      .|.++++..+...|+++ +.+...  ++++...+.+.    |.+++..|+|.|+|.+..  ......+.|+|..+|.+  
T Consensus       258 eCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~sll----iS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~--  331 (1381)
T KOG4221|consen  258 ECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLL----ISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGF--  331 (1381)
T ss_pred             EEEecCCCCCceEEeeCCeeeeecceEEEEecccceE----EeccccccCceEEEEecCCCcccccceEEEEEcCCCC--
Confidence            47777888888888855 555544  44444444555    899999999999997766  44556778899999988  


Q ss_pred             ecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE-E-eCcEEEEecCCCCCCeEEEEEEecCCCCcceee
Q psy15738        102 VSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS-Y-SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAAS  179 (187)
Q Consensus       102 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~-~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~  179 (187)
                      +..+......++.++.|.|.+.|.|.|.+.|+++|..+....+. . ..+.|.|..+-..|.|.|.|.++|..|..+ ..
T Consensus       332 ~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~-a~  410 (1381)
T KOG4221|consen  332 TKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQ-AA  410 (1381)
T ss_pred             CCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCccccc-ch
Confidence            46666778888999999999999999999999999876555433 2 233488889999999999999999999984 66


Q ss_pred             EEEEE
Q psy15738        180 IALHV  184 (187)
Q Consensus       180 ~~l~v  184 (187)
                      +.|.+
T Consensus       411 a~l~v  415 (1381)
T KOG4221|consen  411 AQLEV  415 (1381)
T ss_pred             hhhee
Confidence            66643

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.73  E-value=1.1e-16  Score=95.65  Aligned_cols=80  Identities=38%  Similarity=0.733  Sum_probs=68.1

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-c-EEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-E-YSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~-~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+... . ...  ....|.|.++..+|.|.|.|.|.|..|.. ...+.|
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L   90 (95)
T cd05730          12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQ-EAEIHL   90 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeE-EEEEEE
Confidence            456788999999999999999999999999887554 2 221  23579999999999999999999999998 589999


Q ss_pred             EEEeC
Q psy15738        183 HVLCK  187 (187)
Q Consensus       183 ~v~~~  187 (187)
                      .|..|
T Consensus        91 ~V~~~   95 (95)
T cd05730          91 KVFAK   95 (95)
T ss_pred             EEEeC
Confidence            99865

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.73  E-value=1.7e-16  Score=95.07  Aligned_cols=82  Identities=27%  Similarity=0.427  Sum_probs=69.9

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE----eCcEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAA  178 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~  178 (187)
                      .+....+..|+.+.|.|.+.|.|+|.+.|++++..+.... ...    ..+.|.|.++..+|+|.|.|.|.|..|.. ..
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~-~~   84 (98)
T cd05762           6 FPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSR-QA   84 (98)
T ss_pred             CCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCce-eE
Confidence            3456788999999999999999999999999999886443 222    24679999999999999999999999999 58


Q ss_pred             eEEEEEEe
Q psy15738        179 SIALHVLC  186 (187)
Q Consensus       179 ~~~l~v~~  186 (187)
                      .+.|.|..
T Consensus        85 ~~~l~V~~   92 (98)
T cd05762          85 QVNLTVVD   92 (98)
T ss_pred             EEEEEEec
Confidence            89998864

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.73  E-value=1.4e-16  Score=95.64  Aligned_cols=80  Identities=24%  Similarity=0.317  Sum_probs=67.6

Q ss_pred             ceEEEecCCcEEEEeEecc-CCCCcEEEEeCCeeCCCCcE-E-E-e-------CcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        106 GKVEVKKGYSVTLECKADG-NPVPNITWTRKNNNLPGGEY-S-Y-S-------GNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~-~-~-~-------~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      ....+..|+++.|.|.+.| .|+|.+.|+|+|.++..... . . .       ...|.|.++..+|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            3567889999999999999 88999999999998864322 1 1 1       367999999999999999999999998


Q ss_pred             cceeeEEEEEEe
Q psy15738        175 SAAASIALHVLC  186 (187)
Q Consensus       175 ~~s~~~~l~v~~  186 (187)
                      . +..+.|.|.+
T Consensus        91 ~-~~t~~L~V~v  101 (101)
T cd04975          91 K-SLTFELYVNV  101 (101)
T ss_pred             E-EEEEEEEEEC
Confidence            8 6888888864

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.73  E-value=4.9e-17  Score=92.61  Aligned_cols=72  Identities=33%  Similarity=0.583  Sum_probs=61.7

Q ss_pred             cCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE--EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        112 KGYSVTLECKADGNPVPNITWTRKNNNLPGGEY--SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      +|+.+.|.|.+.|.|.|.+.|++++..+.....  ....+.|.|.++..+|.|.|.|.|.|..|.. +..+.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQ-RTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCce-eEEEEEeC
Confidence            588999999999999999999999988755432  2345789999999999999999999999998 57777764

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.72  E-value=4e-16  Score=112.82  Aligned_cols=136  Identities=15%  Similarity=0.205  Sum_probs=90.6

Q ss_pred             CCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeecc---ce---eeEEEEEEEEc---CCeeEEec
Q psy15738         33 SRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRK---KR---KKKKKKKEKRI---PPRIIYVS  103 (187)
Q Consensus        33 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~---~~---~~~~~~l~v~~---~p~~~~~~  103 (187)
                      ..+....|.++..+...++....++    ...|.+|+.+|.|.|+|.+..   ..   ....+.|.|..   ||.+   .
T Consensus       153 ~~~~~i~W~k~~~~~~~r~~~~~~~----~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~---~  225 (326)
T PHA02785        153 NVNADIIWSGHRRLRNKRLKQRTPG----IITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM---Q  225 (326)
T ss_pred             CCCceEEEccCCccCCcceEecCCC----eEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee---c
Confidence            4556777765433333343333223    344899999999999995542   21   12344566642   3333   2


Q ss_pred             CCceEEEecCCcEEEEeEeccCCCC---cEEEEeCCeeCCCC------cEEE------------eCcEEEEecCCCCCCe
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVP---NITWTRKNNNLPGG------EYSY------------SGNSLTVRHTNRHSAG  162 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p---~~~W~~~~~~~~~~------~~~~------------~~~~l~i~~~~~~d~g  162 (187)
                      .+....+..|+.+.|.|.+.|.|.+   .+.|++||..+...      +...            ....|.|.++..+|.|
T Consensus       226 ~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G  305 (326)
T PHA02785        226 LPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDAT  305 (326)
T ss_pred             CCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCe
Confidence            2345667789999999999998864   79999999876431      1110            1357999999999999


Q ss_pred             EEEEEEecCCCCc
Q psy15738        163 IYLCVANNMVGSS  175 (187)
Q Consensus       163 ~y~C~~~n~~g~~  175 (187)
                      .|.|.|.|..|..
T Consensus       306 ~Y~C~A~n~~~~~  318 (326)
T PHA02785        306 TFTCMAFTIPSIS  318 (326)
T ss_pred             eeEEEEEeccCce
Confidence            9999999988554

>KOG4221|consensus

Probab=99.72  E-value=2.4e-16  Score=124.87  Aligned_cols=155  Identities=21%  Similarity=0.394  Sum_probs=114.5

Q ss_pred             ceEEccCCCCeeEEEeC-e-EeeeccEEEeeccccccceeEEEEEecccceeEEeecc---ceeeEEEEEEEEcCCee--
Q psy15738         27 AIMFADSRPESTFWIFG-K-LITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRK---KRKKKKKKKEKRIPPRI--   99 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~~-~-~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~---~~~~~~~~l~v~~~p~~--   99 (187)
                      .|.+.........|.++ . .....+...+.++.+.    |..+...|.|.|+|...+   ...+..+.|+|...|..  
T Consensus       161 ~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~----I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~  236 (1381)
T KOG4221|consen  161 SCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALE----ISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALN  236 (1381)
T ss_pred             EEEEcCccCceeEEecccccccCCCcEEEcCCCcEE----ecccccCCCceEEEEEecCCcCCccceeEEEecCCccccc
Confidence            34454555556778755 3 2234477778888888    999999999999995543   23366788888744432  


Q ss_pred             --EEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE--E-eCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        100 --IYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS--Y-SGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       100 --~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~--~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                        .+...+....+.+|+++.|.|.+.|.|.|.|.|.+|+..+....+.  . ..+.|.+.+++..|+|.|+|.|.|....
T Consensus       237 ~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~  316 (1381)
T KOG4221|consen  237 KLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDS  316 (1381)
T ss_pred             ceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcc
Confidence              2345566678889999999999999999999999999887655332  2 3678999999999999999999996555


Q ss_pred             cceeeEEEEEEe
Q psy15738        175 SAAASIALHVLC  186 (187)
Q Consensus       175 ~~s~~~~l~v~~  186 (187)
                      . ...+.|.|+.
T Consensus       317 i-dasaev~V~a  327 (1381)
T KOG4221|consen  317 I-DASAEVTVLA  327 (1381)
T ss_pred             c-ccceEEEEEc
Confidence            5 3566677654

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.72  E-value=1.6e-16  Score=90.89  Aligned_cols=71  Identities=30%  Similarity=0.587  Sum_probs=61.1

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCeeCCCC----cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNNNLPGG----EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      |+.+.|.|.+.|.|.|.+.|+++|..+...    ......+.|.|.++..+|+|.|.|.|.|..|.. ...+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNL-LANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeE-EEEEEEEE
Confidence            678999999999999999999999877543    233456789999999999999999999999998 57888876

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.71  E-value=8e-17  Score=89.11  Aligned_cols=67  Identities=27%  Similarity=0.454  Sum_probs=57.2

Q ss_pred             EEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        116 VTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      +.|.|.+.|.|.|.+.|+|+|.++....   ..+.|.|.++..+|+|.|+|.|.|..|.. ++++.+.+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~---~~~~L~i~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~l~v   67 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKH---SQHSLQIKDVTEASAGTYTLVLWNSAAGL-EKRISLELIV   67 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccC---CcCEEEECCCCHHHCEEEEEEEEECCccE-EEEEEEEEEC
Confidence            3689999999999999999999885321   34689999999999999999999999987 5777777653

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.70  E-value=1.1e-15  Score=110.56  Aligned_cols=108  Identities=15%  Similarity=0.213  Sum_probs=76.0

Q ss_pred             EEEEEecccceeEEeeccce--eeEEEEEEEEcCC--eeEEecCCceEEEecCCcEEEEeE-----eccCCCCcEEEEeC
Q psy15738         65 ILAMEKEEEERKKKKKRKKR--KKKKKKKEKRIPP--RIIYVSGAGKVEVKKGYSVTLECK-----ADGNPVPNITWTRK  135 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~~--~~~~~~l~v~~~p--~~~~~~~~~~~~~~~g~~~~l~C~-----~~g~p~p~~~W~~~  135 (187)
                      +..+..+|+|.|+|.++...  ....+.|+|....  .+...  .....+.+|..+.+.|.     ..+.|+|.+.|+++
T Consensus        86 i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~--~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~  163 (326)
T PHA02785         86 ILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLI--SYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGH  163 (326)
T ss_pred             EcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCcccee--eccceecccCcEEEECCChhhcccCCCCceEEEccC
Confidence            66778899999999665433  3456677775432  22211  12244668999999997     24678899999986


Q ss_pred             CeeCCCCcEEE-eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        136 NNNLPGGEYSY-SGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       136 ~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      .. +...+... .++.|.|.+++.+|.|.|.|.+.|..|..
T Consensus       164 ~~-~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~  203 (326)
T PHA02785        164 RR-LRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDK  203 (326)
T ss_pred             Cc-cCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCE
Confidence            53 33333322 35789999999999999999999998875

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.70  E-value=5.1e-16  Score=93.32  Aligned_cols=79  Identities=16%  Similarity=0.231  Sum_probs=66.6

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE-E----------eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS-Y----------SGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~-~----------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ...+..|+.+.|.|.+.|.|+|.+.|+++|.++...... .          ..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            456778999999999999999999999999988654321 1          13579999999999999999999999988


Q ss_pred             ceeeEEEEEEe
Q psy15738        176 AAASIALHVLC  186 (187)
Q Consensus       176 ~s~~~~l~v~~  186 (187)
                       +.++.|.|++
T Consensus        92 -~~t~~l~V~v  101 (101)
T cd05859          92 -SYTFALQIQV  101 (101)
T ss_pred             -EEEEEEEEEC
Confidence             6888888763

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.70  E-value=2.2e-16  Score=88.40  Aligned_cols=68  Identities=19%  Similarity=0.324  Sum_probs=56.8

Q ss_pred             EEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        117 TLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       117 ~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      .|.|.+.|.|.|.+.|++++.++...........|.|.++..+|+|.|.|.|.|..|... ...++.+.
T Consensus         2 ~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~-~~~t~~l~   69 (70)
T cd05864           2 KIPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEE-QRHTFQLV   69 (70)
T ss_pred             EEEeEEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCcee-eEEEEEEE
Confidence            689999999999999999999987654444456899999999999999999999999873 55555543

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.69  E-value=2.5e-16  Score=89.11  Aligned_cols=71  Identities=28%  Similarity=0.532  Sum_probs=60.0

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEE-eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSY-SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      |+.+.|.|.+.|.|.|.+.|++++..+... +... ..+.|.|.++..+|.|.|.|.|.|..|.. +.++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKA-NSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCce-eEEEEEEC
Confidence            678999999999999999999999876443 3332 45789999999999999999999999998 57777764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.69  E-value=5.8e-16  Score=90.53  Aligned_cols=77  Identities=25%  Similarity=0.489  Sum_probs=64.8

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC--cEEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeE
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG--EYSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASI  180 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~  180 (187)
                      .+.+..|+.+.|.|.+.|.|.|.+.|++++.++...  +...    ..+.|.|.++.++|+|.|.|.|.|..|.. +.++
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~~~   82 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED-HASL   82 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE-EEEE
Confidence            456789999999999999999999999999988543  2222    13579999999999999999999999988 5777


Q ss_pred             EEEE
Q psy15738        181 ALHV  184 (187)
Q Consensus       181 ~l~v  184 (187)
                      .|.|
T Consensus        83 ~l~V   86 (86)
T cd05894          83 FVKV   86 (86)
T ss_pred             EEEC
Confidence            7764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.69  E-value=3.8e-16  Score=89.25  Aligned_cols=72  Identities=29%  Similarity=0.529  Sum_probs=60.8

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCeeCCCC----cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNNNLPGG----EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      |+.+.|.|.+.|.|.|.+.|+++|.++...    ......+.|.+.++...|.|.|.|.|.|..|.. ..++.|.|+
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v~   76 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYL-LANAFVNVL   76 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEE-EEEEEEEeC
Confidence            678899999999999999999999887432    122345689999999999999999999999999 588888874

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.69  E-value=6.5e-16  Score=90.28  Aligned_cols=79  Identities=32%  Similarity=0.545  Sum_probs=67.6

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      +....+..|+.+.|.|.+.|.|.|.+.|++++..+... +.....+.|.|.++..+|+|.|.|.|.|..|.. +.++.|.
T Consensus         6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~   84 (85)
T cd05728           6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTI-YASAELA   84 (85)
T ss_pred             CCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeE-EEEEEEE
Confidence            44567889999999999999999999999999987654 333456789999999999999999999999988 5777776


Q ss_pred             E
Q psy15738        184 V  184 (187)
Q Consensus       184 v  184 (187)
                      |
T Consensus        85 V   85 (85)
T cd05728          85 V   85 (85)
T ss_pred             C
Confidence            4

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.68  E-value=1.4e-15  Score=89.51  Aligned_cols=80  Identities=34%  Similarity=0.562  Sum_probs=66.5

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++....... .......|.|.++..+|+|.|.|.|.|..|.. +..+.|.
T Consensus         8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~   86 (88)
T cd04968           8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKD-THQGRIY   86 (88)
T ss_pred             CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcE-EEEEEEE
Confidence            445667899999999999999999999999887654332 22356789999999999999999999999998 5788887


Q ss_pred             EE
Q psy15738        184 VL  185 (187)
Q Consensus       184 v~  185 (187)
                      |+
T Consensus        87 V~   88 (88)
T cd04968          87 VQ   88 (88)
T ss_pred             EC
Confidence            63

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>KOG4194|consensus

Probab=99.68  E-value=8.4e-16  Score=114.76  Aligned_cols=123  Identities=20%  Similarity=0.336  Sum_probs=96.2

Q ss_pred             ccceeEEEEEecccceeEEeec--cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCC-CcEEEEeCC
Q psy15738         60 HYLSYILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPV-PNITWTRKN  136 (187)
Q Consensus        60 ~~~~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~~~W~~~~  136 (187)
                      +...||-+|+.+|.|.|+|.+.  .+..+..++|+|...|.+..+  -....+..|+++.+.|.+.|.|+ |++.|+|++
T Consensus       668 dd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~P--L~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d  745 (873)
T KOG4194|consen  668 DDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIP--LEDQLVVVGETLVLQCLAEGAPADPRLEWFKED  745 (873)
T ss_pred             CCEEEEecccccccceeEEeeeccccceeeceEEEEecCCccccc--ccceEEEecceEEEEEecCCCCCCccccccCCC
Confidence            3455689999999999999444  566677889999999988644  33467889999999999999987 999999999


Q ss_pred             eeCCCCc-EEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        137 NNLPGGE-YSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       137 ~~~~~~~-~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      +++--.. ...  ....|.+.+...+|+|.|+|...|..|... ..+.+.+.
T Consensus       746 ~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~-~~i~l~~~  796 (873)
T KOG4194|consen  746 KPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTER-IHICLLVY  796 (873)
T ss_pred             CceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeecccee-eEEEEEEe
Confidence            8763322 111  235678888889999999999999999874 66666554

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.68  E-value=8e-16  Score=91.30  Aligned_cols=79  Identities=24%  Similarity=0.514  Sum_probs=64.7

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE--e---CcEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY--S---GNSLTVRHTNRHSAGIYLCVANNMVGSSAAA  178 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~--~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~  178 (187)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ...  .   ...|.|.++..+|+|.|.|.|.|..|.. +.
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~   86 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGE-TV   86 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcc-eE
Confidence            345678899999999999999999999999998875432 221  1   2379999999999999999999999988 57


Q ss_pred             eEEEEE
Q psy15738        179 SIALHV  184 (187)
Q Consensus       179 ~~~l~v  184 (187)
                      .+.|.|
T Consensus        87 ~~~v~v   92 (92)
T cd05737          87 DVTVSV   92 (92)
T ss_pred             EEEEeC
Confidence            776654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.67  E-value=6.1e-16  Score=87.84  Aligned_cols=68  Identities=31%  Similarity=0.519  Sum_probs=56.0

Q ss_pred             EEEEeEeccCCCCcEEEEeCCeeCCC--CcEEE--e-C--cEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        116 VTLECKADGNPVPNITWTRKNNNLPG--GEYSY--S-G--NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       116 ~~l~C~~~g~p~p~~~W~~~~~~~~~--~~~~~--~-~--~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      +.|.|.+.|.|.|.+.|++++..+..  .+...  . .  .+|.|.++..+|+|.|.|.|.|..|.. +..+.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVA-TCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeE-EEEEEEeC
Confidence            46899999999999999999988753  23222  1 1  279999999999999999999999988 57777765

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.67  E-value=1.2e-15  Score=87.38  Aligned_cols=71  Identities=28%  Similarity=0.518  Sum_probs=60.9

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCeeCCCCc----EEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNNNLPGGE----YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      |+.+.|.|.+.|.|.|.+.|++++..+....    .......|.|.++..+|.|.|.|.|.|..|.. +..+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYL-LANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeE-EEeEEEEE
Confidence            6789999999999999999999998775432    22345789999999999999999999999998 58888876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.66  E-value=1.3e-15  Score=85.97  Aligned_cols=69  Identities=28%  Similarity=0.611  Sum_probs=57.4

Q ss_pred             cEEEEeEeccCCCCcEEEEeCCeeCCCCc-EE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        115 SVTLECKADGNPVPNITWTRKNNNLPGGE-YS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       115 ~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      ++.|.|.+.|.|.|.+.|++++..+.... .. ...+.|.+.++..+|.|.|.|.|.|..|.. +.++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNV-QASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEE-EEEEEEEC
Confidence            46899999999999999999998775443 22 245678899999999999999999999998 57877764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.66  E-value=1.2e-15  Score=86.03  Aligned_cols=70  Identities=24%  Similarity=0.429  Sum_probs=58.8

Q ss_pred             EEEEeEeccCCCCcEEEEeCCeeCCCCcE-EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        116 VTLECKADGNPVPNITWTRKNNNLPGGEY-SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      +.|.|.+.|.|.|.+.|+++|..+..... ......|.|.++..+|+|.|.|.|.|..|.. +..+.+.+.+
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~~~v   71 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKL-EKRLTFTLVV   71 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccE-EEEEEEEEEC
Confidence            36899999999999999999998865533 3356789999999999999999999999987 5777777653

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.66  E-value=3.4e-15  Score=88.62  Aligned_cols=84  Identities=24%  Similarity=0.516  Sum_probs=67.6

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEEe----CcEEEEecCCCCCCeEEEEEEec
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSYS----GNSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~~----~~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      ||.+.  ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... +....    .+.|.|.++..+|+|.|.|.|.|
T Consensus         3 ~~~~~--~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   80 (92)
T cd05747           3 PATIL--TKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVEN   80 (92)
T ss_pred             CCccc--ccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEc
Confidence            55553  3355678899999999999999999999999999877543 22221    35899999999999999999999


Q ss_pred             CCCCcceeeEEE
Q psy15738        171 MVGSSAAASIAL  182 (187)
Q Consensus       171 ~~g~~~s~~~~l  182 (187)
                      ..|.. +..+.|
T Consensus        81 ~~G~~-~~~~~l   91 (92)
T cd05747          81 SEGKQ-EAQFTL   91 (92)
T ss_pred             CCCCE-eEEEEe
Confidence            99987 566665

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.65  E-value=2.3e-15  Score=88.98  Aligned_cols=77  Identities=22%  Similarity=0.401  Sum_probs=64.1

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE-----EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS-----YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA  181 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~  181 (187)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+......     .....|.|.++..+|.|.|.|.|.|..|.. +..+.
T Consensus         9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~-~~~~~   87 (90)
T cd04972           9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA-NVSVQ   87 (90)
T ss_pred             CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce-eEEEE
Confidence            345789999999999999999999999999877544321     123579999999999999999999999998 57877


Q ss_pred             EEE
Q psy15738        182 LHV  184 (187)
Q Consensus       182 l~v  184 (187)
                      |.|
T Consensus        88 L~v   90 (90)
T cd04972          88 VTV   90 (90)
T ss_pred             EeC
Confidence            764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.65  E-value=1.3e-15  Score=86.52  Aligned_cols=68  Identities=32%  Similarity=0.586  Sum_probs=55.9

Q ss_pred             EEEEeEeccCCCCcEEEEeCCeeCCCC--cEEEe-Cc----EEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        116 VTLECKADGNPVPNITWTRKNNNLPGG--EYSYS-GN----SLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~~~~-~~----~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      +.|.|.+.|.|.|.+.|++++..+...  +.... ..    .|.|.++..+|+|.|.|.|.|..|.. +.++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIV-SCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE-EEEEEEeC
Confidence            468999999999999999999887543  22221 11    69999999999999999999999998 57887765

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.65  E-value=5.6e-15  Score=87.57  Aligned_cols=71  Identities=27%  Similarity=0.599  Sum_probs=58.6

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCeeCCC--CcEEEeCcEEEEecCC-CCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNNNLPG--GEYSYSGNSLTVRHTN-RHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~--~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      +..+.|.|.+.|.|.|.++|++++..+..  .++...++.|.|.++. .+|+|.|.|.|.|..|...+..+.|.
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   92 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS   92 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence            34799999999999999999999987742  3344557889999885 58999999999999999877676653

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.65  E-value=2.2e-15  Score=85.56  Aligned_cols=71  Identities=28%  Similarity=0.609  Sum_probs=59.7

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNNNLPGGE-YS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      |+++.|.|.+.|.|.|.+.|++++..+.... .. ...+.|.|.+++.+|+|.|.|.|.|..|.. +.++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKA-NSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCce-EEEEEEEC
Confidence            6789999999999999999999998875432 22 235789999999999999999999999988 57777764

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.64  E-value=6.7e-15  Score=88.74  Aligned_cols=87  Identities=34%  Similarity=0.675  Sum_probs=64.1

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-----c-E-EEeCcEEEEe-----cCCCCCCeE
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-----E-Y-SYSGNSLTVR-----HTNRHSAGI  163 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-----~-~-~~~~~~l~i~-----~~~~~d~g~  163 (187)
                      ||.+.  ..+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+...     . . ....+.+.+.     .+..+|+|.
T Consensus         1 ~P~i~--~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~   78 (100)
T cd07693           1 PPRIV--EHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGV   78 (100)
T ss_pred             CCeEE--ecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEE
Confidence            34443  3345677889999999999999999999999999887551     1 1 1122322222     236889999


Q ss_pred             EEEEEecCCCCcceeeEEEEE
Q psy15738        164 YLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       164 y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      |.|.|.|..|...+..+.|.|
T Consensus        79 Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          79 YVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEEccccceecceEEEEe
Confidence            999999999996678888876

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.64  E-value=5.6e-15  Score=88.54  Aligned_cols=75  Identities=33%  Similarity=0.625  Sum_probs=60.3

Q ss_pred             EEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC------cEEE----eCcEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738        109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG------EYSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAA  178 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~------~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~  178 (187)
                      ....|+.+.|.|.+.|.|.|.+.|++++..+...      +...    ..+.|.|.++..+|.|.|.|.|.|..|.. +.
T Consensus        13 ~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~   91 (97)
T cd05869          13 AMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQD-SQ   91 (97)
T ss_pred             EEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCe-eE
Confidence            3455899999999999999999999988665322      1111    12579999999999999999999999998 68


Q ss_pred             eEEEEE
Q psy15738        179 SIALHV  184 (187)
Q Consensus       179 ~~~l~v  184 (187)
                      ++.|.|
T Consensus        92 ~~~l~v   97 (97)
T cd05869          92 SMYLEV   97 (97)
T ss_pred             EEEEEC
Confidence            887765

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.64  E-value=5.7e-15  Score=86.60  Aligned_cols=79  Identities=29%  Similarity=0.572  Sum_probs=65.0

Q ss_pred             ceEEEecCCcEEEEeEe-ccCCCCcEEEEeCCeeCCCC--cEE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738        106 GKVEVKKGYSVTLECKA-DGNPVPNITWTRKNNNLPGG--EYS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA  181 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~--~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~  181 (187)
                      ....+.+|+.+.|.|.+ .|.|.|.+.|++++..+...  +.. ...+.|.|.++..+|+|.|.|.|.|..|...+..+.
T Consensus         4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~   83 (86)
T cd05724           4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAAR   83 (86)
T ss_pred             ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEE
Confidence            34677899999999998 78899999999999877542  222 235789999999999999999999999987667777


Q ss_pred             EEE
Q psy15738        182 LHV  184 (187)
Q Consensus       182 l~v  184 (187)
                      |.|
T Consensus        84 l~V   86 (86)
T cd05724          84 LSV   86 (86)
T ss_pred             EEC
Confidence            654

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.64  E-value=2.4e-15  Score=86.60  Aligned_cols=75  Identities=24%  Similarity=0.374  Sum_probs=60.7

Q ss_pred             CceEEEecCCcEEEEeEeccCCCC-cEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVP-NITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      +....+.+|+.+.|.|.+.|.|.| .|.|+++|.++... .....+.|.+.++.  |.|.|.|.|.|..|...++.+.|
T Consensus         5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-~~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~s~~a~~   80 (81)
T cd05749           5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-PAPSPSVLNVPGLN--ETSKFSCEAHNAKGVTTSRTGTV   80 (81)
T ss_pred             CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC-CCCCCCEEEEcccc--CCeEEEEEEEeccCcEEeeeEEe
Confidence            445678899999999999999999 79999999987541 12234678888774  78999999999999886666665

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.64  E-value=3e-15  Score=87.58  Aligned_cols=76  Identities=26%  Similarity=0.457  Sum_probs=63.0

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE----EE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY----SY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA  181 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~----~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~  181 (187)
                      +.+.+|+.+.|.|.+.|.|.|.+.|++++..+.....    ..  ....|.|.++..+|.|.|.|.|.|..|.. ...+.
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~   82 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYH   82 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEE-EEEEE
Confidence            4577899999999999999999999999988754422    11  23468999999999999999999999988 57887


Q ss_pred             EEE
Q psy15738        182 LHV  184 (187)
Q Consensus       182 l~v  184 (187)
                      |.|
T Consensus        83 l~v   85 (85)
T cd05857          83 LDV   85 (85)
T ss_pred             EEC
Confidence            765

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.64  E-value=2e-15  Score=85.20  Aligned_cols=68  Identities=28%  Similarity=0.564  Sum_probs=56.8

Q ss_pred             EEEEeEeccCCCCcEEEEeCCeeCCCCcEE--EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        116 VTLECKADGNPVPNITWTRKNNNLPGGEYS--YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      +.|.|.+.|.|.|.+.|++++..+......  .....|.|.++..+|+|.|.|.|.|..|.. +..+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSA-RHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeE-EEEEEEEE
Confidence            368999999999999999998776543322  245789999999999999999999999988 57777766

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.64  E-value=1.3e-14  Score=86.34  Aligned_cols=71  Identities=24%  Similarity=0.480  Sum_probs=58.4

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCeeCCCC---cEEEeCcEEEEecCC-CCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNNNLPGG---EYSYSGNSLTVRHTN-RHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~---~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      |+.+.|.|.+.|.|.|.++|+++|..+...   .+....+.|.|.++. ..|.|.|.|.|.|..|...++.+.|.
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   93 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR   93 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence            468999999999999999999999887532   333456789998865 58999999999999999877776653

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.64  E-value=9e-15  Score=86.99  Aligned_cols=71  Identities=31%  Similarity=0.604  Sum_probs=58.6

Q ss_pred             cCCcEEEEeEeccCCCCcEEEEeCCeeCCCC---cEEEeCcEEEEecCC-CCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        112 KGYSVTLECKADGNPVPNITWTRKNNNLPGG---EYSYSGNSLTVRHTN-RHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~---~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      +|+.+.|.|.+.|.|.|.+.|++++..+...   ++....+.|.|.++. ..|.|.|.|.|.|..|...+..+.|
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l   92 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL   92 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence            4789999999999999999999999887533   223356789998875 6899999999999999886666655

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.64  E-value=2.9e-15  Score=84.12  Aligned_cols=68  Identities=37%  Similarity=0.759  Sum_probs=57.3

Q ss_pred             EEEEeEeccCCCCcEEEEeCCeeCCCCcEE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        116 VTLECKADGNPVPNITWTRKNNNLPGGEYS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      +.|.|.+.|.|+|.+.|++++..+...+.. .....|.|.++..+|+|.|.|.|.|..|.. +..+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKI-EASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcE-EEEEEEEC
Confidence            468999999999999999998776555433 346789999999999999999999999988 57777764

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.63  E-value=4.9e-15  Score=84.34  Aligned_cols=69  Identities=30%  Similarity=0.544  Sum_probs=57.1

Q ss_pred             cEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        115 SVTLECKADGNPVPNITWTRKNNNLPGGE-YSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       115 ~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      .+.|.|.+.|.|.|.+.|++++..+.... ...    ....|.|.++..+|+|.|.|.|.|..|.. +.++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEEC
Confidence            36899999999999999999999874432 222    23579999999999999999999999988 57877764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.63  E-value=7.1e-15  Score=87.77  Aligned_cols=80  Identities=30%  Similarity=0.533  Sum_probs=63.9

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc---E-EEeCcEEEEecC-----CCCCCeEEEEEEecC-CCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---Y-SYSGNSLTVRHT-----NRHSAGIYLCVANNM-VGS  174 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~---~-~~~~~~l~i~~~-----~~~d~g~y~C~~~n~-~g~  174 (187)
                      |....+.+|+.+.|.|.+.|.|.|.+.|+++|..+....   . ....+.+.+.++     ...|.|.|.|.|.|. .|.
T Consensus         6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~   85 (95)
T cd05722           6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS   85 (95)
T ss_pred             CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence            344567789999999999999999999999998875432   1 224566777666     578999999999999 998


Q ss_pred             cceeeEEEEE
Q psy15738        175 SAAASIALHV  184 (187)
Q Consensus       175 ~~s~~~~l~v  184 (187)
                      ..++.+.|.|
T Consensus        86 ~~s~~~~l~v   95 (95)
T cd05722          86 IVSRTARLTV   95 (95)
T ss_pred             EEEeeeEEeC
Confidence            8778887765

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.63  E-value=8.7e-15  Score=85.96  Aligned_cols=73  Identities=25%  Similarity=0.408  Sum_probs=61.0

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCeeCCCC--cEEEe--------CcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNNNLPGG--EYSYS--------GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~~~~--------~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      |+.+.|.|.+.|.|++.+.|++++..+...  ++...        .+.|.|.++..+|+|.|.|.|.|..|.. +..+.|
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGED-RGIIQL   79 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcc-eEEEEE
Confidence            688999999999999999999999877432  22211        1579999999999999999999999998 588888


Q ss_pred             EEEe
Q psy15738        183 HVLC  186 (187)
Q Consensus       183 ~v~~  186 (187)
                      .|..
T Consensus        80 ~V~~   83 (88)
T cd05735          80 TVQE   83 (88)
T ss_pred             EEeC
Confidence            8864

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.62  E-value=1.7e-14  Score=86.58  Aligned_cols=78  Identities=28%  Similarity=0.569  Sum_probs=61.5

Q ss_pred             ceEEEecCCcEEEEeEeccCCCCcEEEEeC--CeeCCC------CcEEE----eCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        106 GKVEVKKGYSVTLECKADGNPVPNITWTRK--NNNLPG------GEYSY----SGNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~--~~~~~~------~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++.  +..+..      .+...    ....|.|.++..+|+|.|.|.|.|..|
T Consensus         9 ~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   88 (98)
T cd05870           9 KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIG   88 (98)
T ss_pred             ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCC
Confidence            356788999999999999999999999994  333221      12221    135799999999999999999999999


Q ss_pred             CcceeeEEEEE
Q psy15738        174 SSAAASIALHV  184 (187)
Q Consensus       174 ~~~s~~~~l~v  184 (187)
                      .. +.++.|.|
T Consensus        89 ~~-~~~~~l~~   98 (98)
T cd05870          89 GH-QKSMYLDI   98 (98)
T ss_pred             cc-eeEEEEeC
Confidence            88 57877764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.62  E-value=1.1e-14  Score=88.96  Aligned_cols=74  Identities=23%  Similarity=0.425  Sum_probs=60.3

Q ss_pred             cCCcEEEEeEeccCCCCcEEEEeCCeeCCCC--cEEE--------eCcEEEEecCC-CCCCeEEEEEEecCCCCcceeeE
Q psy15738        112 KGYSVTLECKADGNPVPNITWTRKNNNLPGG--EYSY--------SGNSLTVRHTN-RHSAGIYLCVANNMVGSSAAASI  180 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~~~--------~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~s~~~  180 (187)
                      .|..+.|.|.+.|.|+|.+.|++++..+...  ++..        ..+.|.|.++. .+|.|.|.|.|.|..|.. +..+
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~~i  100 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGED-SLDI  100 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccC-cEEE
Confidence            4678999999999999999999999887532  2211        13579999987 589999999999999998 5888


Q ss_pred             EEEEEe
Q psy15738        181 ALHVLC  186 (187)
Q Consensus       181 ~l~v~~  186 (187)
                      .|.|..
T Consensus       101 ~L~~~~  106 (109)
T cd05773         101 QLVSTS  106 (109)
T ss_pred             EEEecC
Confidence            888753

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.62  E-value=9.3e-15  Score=87.01  Aligned_cols=78  Identities=28%  Similarity=0.509  Sum_probs=61.2

Q ss_pred             eEEEecCCcEEEEeEeccCCC-CcEEEEe-CCeeCCC-C-cEEE-e----CcEEEEecCCCCCCeEEEEEEecCC-CCcc
Q psy15738        107 KVEVKKGYSVTLECKADGNPV-PNITWTR-KNNNLPG-G-EYSY-S----GNSLTVRHTNRHSAGIYLCVANNMV-GSSA  176 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~-p~~~W~~-~~~~~~~-~-~~~~-~----~~~l~i~~~~~~d~g~y~C~~~n~~-g~~~  176 (187)
                      ...+..|+.+.|.|.+.|.|. |.+.|++ ++..+.. . +... .    .+.|.|.++..+|+|.|+|.|.|.. |.. 
T Consensus         9 ~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~-   87 (96)
T cd05865           9 QGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGES-   87 (96)
T ss_pred             ccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcE-
Confidence            346788999999999999994 7999998 6765543 2 2221 1    2589999999999999999999997 555 


Q ss_pred             eeeEEEEEE
Q psy15738        177 AASIALHVL  185 (187)
Q Consensus       177 s~~~~l~v~  185 (187)
                      +.++.|.|+
T Consensus        88 ~~s~~l~v~   96 (96)
T cd05865          88 EATVNVKIF   96 (96)
T ss_pred             EEEEEEEEC
Confidence            678887763

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.62  E-value=5e-15  Score=84.22  Aligned_cols=69  Identities=32%  Similarity=0.571  Sum_probs=57.0

Q ss_pred             EEEEeEeccCCCCcEEEEeCCeeCCC---CcEE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        116 VTLECKADGNPVPNITWTRKNNNLPG---GEYS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       116 ~~l~C~~~g~p~p~~~W~~~~~~~~~---~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      +.|.|.+.|.|.|.+.|++++..+..   .+.. ...+.|.|.++..+|+|.|.|.|.|..|...+..+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            36899999999999999999987752   2222 235689999999999999999999999987677777766

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.62  E-value=1.3e-14  Score=86.86  Aligned_cols=77  Identities=34%  Similarity=0.598  Sum_probs=62.6

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC------cEEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcc
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG------EYSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSA  176 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~------~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  176 (187)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++..+...      +...    ....|.|.++..+|+|.|.|.|.|..|.. 
T Consensus        10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-   88 (96)
T cd05732          10 NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGD-   88 (96)
T ss_pred             ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCc-
Confidence            456789999999999999999999999988654322      1111    12479999999999999999999999998 


Q ss_pred             eeeEEEEE
Q psy15738        177 AASIALHV  184 (187)
Q Consensus       177 s~~~~l~v  184 (187)
                      +.++.|.|
T Consensus        89 ~~s~~l~v   96 (96)
T cd05732          89 QQSMYLEV   96 (96)
T ss_pred             EEEEEEeC
Confidence            68887764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.62  E-value=8.7e-15  Score=83.86  Aligned_cols=70  Identities=36%  Similarity=0.757  Sum_probs=56.0

Q ss_pred             EEEEeEeccCCCCcEEEEeCCeeCCCCc--EEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcc-eeeEEEEEE
Q psy15738        116 VTLECKADGNPVPNITWTRKNNNLPGGE--YSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSA-AASIALHVL  185 (187)
Q Consensus       116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~--~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-s~~~~l~v~  185 (187)
                      +.|.|.+.|.|.|.+.|+++|.++....  ...  ..+.|.|.++..+|+|.|.|.|.|..|... +..++|.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            4789999999999999999999875442  222  235899999999999999999999999863 346666654

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.62  E-value=7e-15  Score=83.87  Aligned_cols=66  Identities=26%  Similarity=0.481  Sum_probs=54.4

Q ss_pred             EEEeEeccCCCCcEEEEeCCeeCCCCcEE------E----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        117 TLECKADGNPVPNITWTRKNNNLPGGEYS------Y----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       117 ~l~C~~~g~p~p~~~W~~~~~~~~~~~~~------~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      .+.|.+.|.|.|.++|+++|..+....+.      .    ..+.|.|.++..+|+|.|.|.|.|..|.. ++++.++
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED-EKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc-ceEEEee
Confidence            47899999999999999999998655431      0    13579999999999999999999999988 4676654

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.61  E-value=8.5e-15  Score=83.39  Aligned_cols=68  Identities=31%  Similarity=0.512  Sum_probs=55.6

Q ss_pred             EEEEeEeccCCCCcEEEEeCCeeCCCC--cEEE-eC----cEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        116 VTLECKADGNPVPNITWTRKNNNLPGG--EYSY-SG----NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~~~-~~----~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      +.|.|.+.|.|.|.+.|++++..+...  +... ..    ..|.|.++..+|+|.|.|.|.|..|.. +.++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVV-SCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcE-EEEEEEeC
Confidence            468999999999999999999887632  2221 11    269999999999999999999999988 57777764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.61  E-value=1.8e-14  Score=82.94  Aligned_cols=76  Identities=21%  Similarity=0.497  Sum_probs=61.6

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      ...+.+|+.+.|.|.+.+. .+.+.|+++|..+... +.......|.|.++..+|+|.|.|.|.|..|.. ...+.|.|
T Consensus         3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~-~~~~~v~V   79 (79)
T cd04973           3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSD-TTYFSVNV   79 (79)
T ss_pred             cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcc-cEEEEEeC
Confidence            3567899999999999986 5689999999887654 333456789999999999999999999999876 45655543

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.61  E-value=1.9e-14  Score=85.25  Aligned_cols=79  Identities=25%  Similarity=0.509  Sum_probs=63.8

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EE--Ee---CcEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YS--YS---GNSLTVRHTNRHSAGIYLCVANNMVGSSAAA  178 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~--~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~  178 (187)
                      |....+.+|+.+.|.|.+.|.|.|.+.|++++..+.... +.  ..   ...|.|.++..+|+|.|.|.|.|..|.. +.
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~   86 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE-TV   86 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce-ee
Confidence            345678999999999999999999999999998775432 21  11   1379999999999999999999999988 46


Q ss_pred             eEEEEE
Q psy15738        179 SIALHV  184 (187)
Q Consensus       179 ~~~l~v  184 (187)
                      .+.|.|
T Consensus        87 ~~~v~~   92 (92)
T cd05891          87 DVTVSV   92 (92)
T ss_pred             EEEEEC
Confidence            766654

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.60  E-value=5.5e-15  Score=82.89  Aligned_cols=66  Identities=30%  Similarity=0.662  Sum_probs=55.4

Q ss_pred             EEEEeEeccCCCCcEEEEeCCeeCCCC-cEEE-eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        116 VTLECKADGNPVPNITWTRKNNNLPGG-EYSY-SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      +.|.|.+.|.|.|.+.|++++..+... +... ..+.|.|.++..+|+|.|.|.|.|..|.. +.++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYA-SVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcE-EEEEEe
Confidence            468999999999999999999877543 3322 36789999999999999999999999988 567665

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.60  E-value=1.9e-14  Score=80.54  Aligned_cols=67  Identities=28%  Similarity=0.508  Sum_probs=53.9

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEY-SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      |+.+.|.|.+.|.|.|.+.|++++..+..... ......|.|.++.  |.|.|.|.|.|..|.. ..++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~-~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMI-EATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEE-EEEEEE
Confidence            67899999999999999999999988754432 2234578888874  7899999999999987 466655

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.59  E-value=1e-14  Score=82.38  Aligned_cols=68  Identities=31%  Similarity=0.645  Sum_probs=56.2

Q ss_pred             EEEEeEeccCCCCcEEEEeCCeeCCCCcEE--EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        116 VTLECKADGNPVPNITWTRKNNNLPGGEYS--YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      +.|.|.+.|.|.|.+.|++++..+......  .....|.|.++..+|+|.|.|.|.|..|.. +..+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence            468999999999999999998876544322  234689999999999999999999999987 57777765

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.59  E-value=1.8e-14  Score=85.13  Aligned_cols=72  Identities=32%  Similarity=0.637  Sum_probs=59.2

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCeeC---------CCCcEEE-eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNNNL---------PGGEYSY-SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~~~---------~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      |+.+.|.|.+.|.|.|.+.|++++...         ...++.. ..+.|.|.++..+|+|.|.|.|.|..|.. +..+.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l   79 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSI-LTKAYL   79 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCce-EEEEEE
Confidence            678999999999999999999988642         1122222 35689999999999999999999999998 588888


Q ss_pred             EEE
Q psy15738        183 HVL  185 (187)
Q Consensus       183 ~v~  185 (187)
                      .|.
T Consensus        80 ~V~   82 (90)
T cd05726          80 EVT   82 (90)
T ss_pred             EEe
Confidence            885

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.59  E-value=9.7e-15  Score=86.36  Aligned_cols=79  Identities=43%  Similarity=0.777  Sum_probs=66.4

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcceee
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAAS  179 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~  179 (187)
                      +....+..|+.+.|.|.+.|.|.|.+.|++++..+.... ...    ....|.|.++...|.|.|.|.+.|..|.. +..
T Consensus         7 ~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~-~~~   85 (90)
T PF07679_consen    7 PKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEA-TAS   85 (90)
T ss_dssp             SSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEE-EEE
T ss_pred             cCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEE-EEE
Confidence            456789999999999999999999999999998876542 221    24679999999999999999999998877 577


Q ss_pred             EEEEE
Q psy15738        180 IALHV  184 (187)
Q Consensus       180 ~~l~v  184 (187)
                      +.|.|
T Consensus        86 ~~l~V   90 (90)
T PF07679_consen   86 VNLTV   90 (90)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            77765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.59  E-value=2.4e-14  Score=81.52  Aligned_cols=71  Identities=31%  Similarity=0.666  Sum_probs=58.0

Q ss_pred             CCcEEEEeEeccCCCCcEEEEe-CCeeCCCCcE--EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        113 GYSVTLECKADGNPVPNITWTR-KNNNLPGGEY--SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~-~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+.....  ....+.|.|.++...|+|.|.|.|.|..|.. +..+.|+|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEA-TATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeE-EEEEEEEC
Confidence            6789999999999999999997 5655543322  2345789999999999999999999999987 57777764

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.59  E-value=1.7e-14  Score=85.14  Aligned_cols=72  Identities=31%  Similarity=0.537  Sum_probs=56.3

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCC----eeCCCC--cE--EE----------eCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKN----NNLPGG--EY--SY----------SGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~----~~~~~~--~~--~~----------~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      |+.+.|.|.+.|.|.|.++|++++    ..+...  ..  ..          ....|.|.+++.+|.|.|.|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            578999999999999999999964    221110  00  00          1247999999999999999999999999


Q ss_pred             cceeeEEEEEE
Q psy15738        175 SAAASIALHVL  185 (187)
Q Consensus       175 ~~s~~~~l~v~  185 (187)
                      . +.++.|.|+
T Consensus        81 ~-~~sa~L~V~   90 (90)
T cd04974          81 S-HHSAWLTVL   90 (90)
T ss_pred             c-cCCEEEEeC
Confidence            8 589898874

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.59  E-value=1.6e-14  Score=82.47  Aligned_cols=69  Identities=30%  Similarity=0.611  Sum_probs=55.2

Q ss_pred             EEEEeEeccCCCCcEEEEeCCeeC-CC---CcEE--EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        116 VTLECKADGNPVPNITWTRKNNNL-PG---GEYS--YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       116 ~~l~C~~~g~p~p~~~W~~~~~~~-~~---~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      +.|.|.+.|.|.|.+.|++++... ..   .+..  .....|.|.++..+|+|.|.|.|.|..|.. +..+.|.|+
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~V~   75 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSI-SANATLTVL   75 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEE-EeeEEEEEC
Confidence            368999999999999999998632 11   1111  134689999999999999999999999987 688888873

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.58  E-value=2.1e-14  Score=83.40  Aligned_cols=75  Identities=32%  Similarity=0.552  Sum_probs=60.5

Q ss_pred             EEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE-E--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS-Y--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~-~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      ....|+.+.|.|.+.|.|.|.+.|++++..+...... .  ....|.|.++..+|+|.|.|.+.|..|.. +..+.|.|
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v~v   82 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEI-NATYKVDV   82 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccE-EEEEEEeC
Confidence            4567999999999999999999999999876443221 1  23579999999999999999999999987 56766653

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.58  E-value=4.7e-14  Score=82.24  Aligned_cols=73  Identities=27%  Similarity=0.443  Sum_probs=59.5

Q ss_pred             CcEEEEeEeccCCCC--cEEEEeCCeeCCCC----cEEE-----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        114 YSVTLECKADGNPVP--NITWTRKNNNLPGG----EYSY-----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       114 ~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~----~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      +.+.|.|.+.|.|.|  .+.|++++..+...    .+..     ..+.|.|.+++..|.|.|.|.|.|..|.. +.++.|
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~-~~~~~L   79 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSA-SASATL   79 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCE-EEEEEE
Confidence            367899999999987  47999999876432    2111     24689999999999999999999999998 689999


Q ss_pred             EEEeC
Q psy15738        183 HVLCK  187 (187)
Q Consensus       183 ~v~~~  187 (187)
                      .|..+
T Consensus        80 ~V~~~   84 (85)
T cd05854          80 VVRGP   84 (85)
T ss_pred             EEECC
Confidence            98754

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.58  E-value=2.5e-14  Score=82.51  Aligned_cols=66  Identities=27%  Similarity=0.462  Sum_probs=53.4

Q ss_pred             EEEeEeccCCCCcEEEEeCCeeCCCCcEE---E---------eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        117 TLECKADGNPVPNITWTRKNNNLPGGEYS---Y---------SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       117 ~l~C~~~g~p~p~~~W~~~~~~~~~~~~~---~---------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      .+.|.+.|.|.|.++|+++|..+......   .         ..+.|.|.++...|+|.|.|.|.|..|.. +..+.|.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD-SKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe-eeEEEee
Confidence            46899999999999999999988654321   0         13469999999999999999999999987 4665543

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.58  E-value=4.6e-14  Score=83.24  Aligned_cols=77  Identities=30%  Similarity=0.528  Sum_probs=61.5

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeC-CeeCCCC-cEEE-eC---cEEEEecCCCCCCeEEEEEEecCCCCcceeeE
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRK-NNNLPGG-EYSY-SG---NSLTVRHTNRHSAGIYLCVANNMVGSSAAASI  180 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~-~~~~~~~-~~~~-~~---~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~  180 (187)
                      ...+..|+++.|.|.+.|.|. .+.|+++ +..+... +... ..   ..|.|.++..+|+|.|.|.|.|..|.....++
T Consensus         9 ~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i   87 (92)
T cd05866           9 KVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV   87 (92)
T ss_pred             ceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEE
Confidence            456889999999999999987 8999984 5555433 3332 22   37999999999999999999999998766777


Q ss_pred             EEEE
Q psy15738        181 ALHV  184 (187)
Q Consensus       181 ~l~v  184 (187)
                      .|.+
T Consensus        88 ~l~~   91 (92)
T cd05866          88 VLEI   91 (92)
T ss_pred             EEEE
Confidence            7765

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.57  E-value=2.8e-14  Score=80.03  Aligned_cols=60  Identities=22%  Similarity=0.360  Sum_probs=50.2

Q ss_pred             EEEEeEeccCCCCcEEEEeCCeeCCCC--cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        116 VTLECKADGNPVPNITWTRKNNNLPGG--EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +.|.|.+.|.|+|++.|++++.++...  ........|.|.++..+|+|.|+|.|.|.....
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~   62 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNL   62 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccce
Confidence            368999999999999999999987654  233345689999999999999999999986554

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.57  E-value=5e-14  Score=81.53  Aligned_cols=73  Identities=23%  Similarity=0.366  Sum_probs=59.8

Q ss_pred             CcEEEEeEecc--CCCCcEEEEeCCeeCCC---C-cEEE-----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        114 YSVTLECKADG--NPVPNITWTRKNNNLPG---G-EYSY-----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       114 ~~~~l~C~~~g--~p~p~~~W~~~~~~~~~---~-~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      +++.|.|.+.+  .+++.+.|+++|..+..   + ++..     ..+.|.|.++...|+|.|+|.|.|..+.. +.++.|
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~-~a~a~L   79 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKL-SAAADL   79 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCce-EEEEEE
Confidence            46789999976  45778999999998852   1 2222     34689999999999999999999999999 699999


Q ss_pred             EEEeC
Q psy15738        183 HVLCK  187 (187)
Q Consensus       183 ~v~~~  187 (187)
                      .|.++
T Consensus        80 ~V~~p   84 (85)
T cd05853          80 IVRGP   84 (85)
T ss_pred             EEecC
Confidence            99864

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.56  E-value=3.5e-14  Score=81.57  Aligned_cols=69  Identities=29%  Similarity=0.461  Sum_probs=55.6

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      |+.+.|.|.+.|.|.|.+.|++++..+.... ...    ....|.|.++..+|.|.|.|.|.|..|... ....+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~~   74 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVF-GIPDG   74 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEE-ecccE
Confidence            6789999999999999999999988765432 221    125799999999999999999999999873 44333

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.56  E-value=4e-14  Score=81.59  Aligned_cols=69  Identities=38%  Similarity=0.688  Sum_probs=54.7

Q ss_pred             EEEEeEeccCCCCcEEEEeCCeeC---------CCCcEE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        116 VTLECKADGNPVPNITWTRKNNNL---------PGGEYS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       116 ~~l~C~~~g~p~p~~~W~~~~~~~---------~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      +.|.|.+.|.|.|.+.|++++...         ..++.. ...+.|.|.++..+|+|.|.|.|.|..|...+..+.|.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            468999999999999999975321         112222 245789999999999999999999999988777877764

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.55  E-value=5.4e-14  Score=82.21  Aligned_cols=73  Identities=32%  Similarity=0.470  Sum_probs=59.2

Q ss_pred             CcEEEEeEeccCCCC--cEEEEeCCeeCCCCc----E--E---EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        114 YSVTLECKADGNPVP--NITWTRKNNNLPGGE----Y--S---YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       114 ~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~----~--~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      +++.|.|.+.|.|.|  .+.|+++|..+....    +  .   ...+.|.|.+++..|+|.|.|.|.|..|.. +..+.|
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l   79 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL-SASADL   79 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcE-EEEEEE
Confidence            467899999999987  568999998764321    1  1   134689999999999999999999999988 689999


Q ss_pred             EEEeC
Q psy15738        183 HVLCK  187 (187)
Q Consensus       183 ~v~~~  187 (187)
                      .|.++
T Consensus        80 ~V~~p   84 (85)
T cd04970          80 IVRGP   84 (85)
T ss_pred             EEECC
Confidence            88754

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.55  E-value=4.1e-14  Score=83.61  Aligned_cols=72  Identities=29%  Similarity=0.473  Sum_probs=56.2

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeC----CeeCCCC-c--EE-E----------eCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        113 GYSVTLECKADGNPVPNITWTRK----NNNLPGG-E--YS-Y----------SGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~----~~~~~~~-~--~~-~----------~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      |+++.|.|.+.|.|.|.+.|+++    +..+... .  .. .          ..+.|.|.+++.+|+|.|.|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            67899999999999999999984    3322211 1  00 0          0147999999999999999999999999


Q ss_pred             cceeeEEEEEE
Q psy15738        175 SAAASIALHVL  185 (187)
Q Consensus       175 ~~s~~~~l~v~  185 (187)
                      . +.++.|.|+
T Consensus        81 ~-~~~a~L~V~   90 (90)
T cd05858          81 S-HHSAWLTVL   90 (90)
T ss_pred             c-cceEEEEEC
Confidence            8 588888873

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.54  E-value=6e-14  Score=80.36  Aligned_cols=67  Identities=28%  Similarity=0.627  Sum_probs=52.9

Q ss_pred             EEEEeEeccCCCCcEEEEeCCeeCCCC---cEE--EeCcEEEEecCCC----CCCeEEEEEEecCCCCcceeeEEE
Q psy15738        116 VTLECKADGNPVPNITWTRKNNNLPGG---EYS--YSGNSLTVRHTNR----HSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~---~~~--~~~~~l~i~~~~~----~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      +.|.|.+.|.|.|.++|++++..+...   ...  ...+.|.|.++..    +|.|.|.|.|.|..|...+..+.|
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l   76 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL   76 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence            468999999999999999999877432   222  2357899988754    689999999999999886666554

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.54  E-value=9.9e-14  Score=82.30  Aligned_cols=77  Identities=26%  Similarity=0.369  Sum_probs=61.7

Q ss_pred             eEEEecCCcEEEEeEecc-----CCCCcEEEEeCCeeCCC-----CcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcc
Q psy15738        107 KVEVKKGYSVTLECKADG-----NPVPNITWTRKNNNLPG-----GEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSA  176 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g-----~p~p~~~W~~~~~~~~~-----~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  176 (187)
                      ...+.+|+.+.|.|.+.|     .|.|.+.|++++..+..     .+.......|.|.++..+|+|.|.|.+.|..|.. 
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~-   86 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM-   86 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE-
Confidence            456778999999999998     68889999999865422     1222245789999999999999999999999987 


Q ss_pred             eeeEEEEE
Q psy15738        177 AASIALHV  184 (187)
Q Consensus       177 s~~~~l~v  184 (187)
                      +..+.|.|
T Consensus        87 ~~~~~L~v   94 (94)
T cd05756          87 KVSISLTV   94 (94)
T ss_pred             EEEEEEEC
Confidence            46777664

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.53  E-value=1.1e-13  Score=80.15  Aligned_cols=71  Identities=27%  Similarity=0.540  Sum_probs=55.7

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCee-----CCCCc----E-EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNNN-----LPGGE----Y-SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~~-----~~~~~----~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      |+.+.|.|.+.|.|.|.+.|++++..     .....    . ......|.|.++..+|+|.|.|.|.|..|.. ...+.|
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l   79 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLL-RANFPL   79 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceE-EEEEEE
Confidence            67899999999999999999997421     11111    1 1123679999999999999999999999988 578887


Q ss_pred             EE
Q psy15738        183 HV  184 (187)
Q Consensus       183 ~v  184 (187)
                      .|
T Consensus        80 ~v   81 (81)
T cd05765          80 SV   81 (81)
T ss_pred             eC
Confidence            65

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.52  E-value=3.9e-13  Score=79.57  Aligned_cols=67  Identities=30%  Similarity=0.668  Sum_probs=54.6

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCeeCCC---CcEEEeCcEEEEecCCC-CCCeEEEEEEecCCCCcceee
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNNNLPG---GEYSYSGNSLTVRHTNR-HSAGIYLCVANNMVGSSAAAS  179 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~---~~~~~~~~~l~i~~~~~-~d~g~y~C~~~n~~g~~~s~~  179 (187)
                      +..+.|.|.+.|.|.|.++|++++..+..   .......+.|.|.++.. +|.|.|.|.|.|..|...|..
T Consensus        19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~~   89 (91)
T cd04967          19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSRE   89 (91)
T ss_pred             CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEecc
Confidence            45799999999999999999999987732   22334567899988875 899999999999999875544

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.51  E-value=1.5e-13  Score=78.64  Aligned_cols=67  Identities=25%  Similarity=0.622  Sum_probs=51.6

Q ss_pred             EEEEeEeccCCCCcEEEEeCCeeCCCC---cEEE--eCcEEEEecCCCC----CCeEEEEEEecCCCCcceeeEEE
Q psy15738        116 VTLECKADGNPVPNITWTRKNNNLPGG---EYSY--SGNSLTVRHTNRH----SAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~---~~~~--~~~~l~i~~~~~~----d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      +.|.|.+.|.|.|.++|++++..+...   ....  ..+.|.|..+..+    |.|.|.|.|.|..|...+..+.|
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI   76 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence            468999999999999999999876321   2222  3577888777643    68999999999999886666654

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.51  E-value=4.5e-13  Score=79.34  Aligned_cols=77  Identities=30%  Similarity=0.549  Sum_probs=58.9

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEe-CCeeCCC-CcEE-Ee----CcEEEEecCCCCCCeEEEEEEecCCCCcceee
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTR-KNNNLPG-GEYS-YS----GNSLTVRHTNRHSAGIYLCVANNMVGSSAAAS  179 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~-~~~~~~~-~~~~-~~----~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~  179 (187)
                      ...+..|+++.|.|.+.|.| +.+.|++ ++..+.. .+.. ..    ...|.|.++..+|+|.|.|.|.|..|.....+
T Consensus         9 ~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~s   87 (92)
T cd04977           9 QGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEAT   87 (92)
T ss_pred             cEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeE
Confidence            45688999999999999986 4999997 5554433 2222 11    24799999999999999999999977654677


Q ss_pred             EEEEE
Q psy15738        180 IALHV  184 (187)
Q Consensus       180 ~~l~v  184 (187)
                      +.|.|
T Consensus        88 v~l~~   92 (92)
T cd04977          88 VNLKI   92 (92)
T ss_pred             EEEEC
Confidence            77654

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.50  E-value=9.2e-13  Score=79.05  Aligned_cols=76  Identities=33%  Similarity=0.480  Sum_probs=60.4

Q ss_pred             ceEEEecCCcEEEEeEeccCCCC-cEEEEeCCeeCCCC---cEEEe--------CcEEEEecCCCCC-CeEEEEEEecCC
Q psy15738        106 GKVEVKKGYSVTLECKADGNPVP-NITWTRKNNNLPGG---EYSYS--------GNSLTVRHTNRHS-AGIYLCVANNMV  172 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~---~~~~~--------~~~l~i~~~~~~d-~g~y~C~~~n~~  172 (187)
                      ....+..|+.+.|.|.+.|.|.| .+.|++++..+...   ++...        .+.|.|.++..+| .|.|.|.|.|..
T Consensus         9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~   88 (98)
T cd05758           9 ATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSF   88 (98)
T ss_pred             CcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCC
Confidence            34567889999999999999999 59999999876532   33221        1479999999855 899999999999


Q ss_pred             CCcceeeEEE
Q psy15738        173 GSSAAASIAL  182 (187)
Q Consensus       173 g~~~s~~~~l  182 (187)
                      |.. ...+.|
T Consensus        89 G~~-~~~~~L   97 (98)
T cd05758          89 GSG-TAIISL   97 (98)
T ss_pred             Ccc-cEEEEe
Confidence            988 466665

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.50  E-value=4.9e-13  Score=78.82  Aligned_cols=79  Identities=25%  Similarity=0.407  Sum_probs=62.4

Q ss_pred             ceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-----cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeE
Q psy15738        106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-----EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASI  180 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~  180 (187)
                      ....+.+|+.+.|.|.+.+ |.+.+.|++++..+...     +.......|.|.++..+|+|.|.|.|.+..+...+.++
T Consensus         4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~   82 (89)
T cd04979           4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATY   82 (89)
T ss_pred             eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEE
Confidence            3456788999999999977 88899999999766443     22334467999999999999999999987766556777


Q ss_pred             EEEEE
Q psy15738        181 ALHVL  185 (187)
Q Consensus       181 ~l~v~  185 (187)
                      +|.|.
T Consensus        83 ~l~V~   87 (89)
T cd04979          83 SLNVL   87 (89)
T ss_pred             EEEEe
Confidence            77764

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.50  E-value=3.8e-13  Score=76.89  Aligned_cols=68  Identities=26%  Similarity=0.596  Sum_probs=56.1

Q ss_pred             EEEeEeccCCCCcEEEEeCCeeCCCCc---EEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        117 TLECKADGNPVPNITWTRKNNNLPGGE---YSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       117 ~l~C~~~g~p~p~~~W~~~~~~~~~~~---~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      .|.|.+.|.|.|.+.|++++..+....   ...  ....|.|.++..+|.|.|.|.+.|..|.. ...+.|.|.
T Consensus         2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   74 (76)
T cd05736           2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVD-EDISSLFVE   74 (76)
T ss_pred             EeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCc-ceEEEEEEE
Confidence            689999999999999999998775431   211  23579999999999999999999999998 478888774

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.49  E-value=5.8e-13  Score=76.15  Aligned_cols=67  Identities=31%  Similarity=0.637  Sum_probs=51.4

Q ss_pred             EEEEeEeccCCCCcEEEEeCCeeCC---CCcEEE--eCcEEEEecCCC----CCCeEEEEEEecCCCCcceeeEEE
Q psy15738        116 VTLECKADGNPVPNITWTRKNNNLP---GGEYSY--SGNSLTVRHTNR----HSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       116 ~~l~C~~~g~p~p~~~W~~~~~~~~---~~~~~~--~~~~l~i~~~~~----~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      +.|.|.+.|.|.|.+.|++++..+.   ..+...  ..+.|.|..+..    .|.|.|.|.|.|..|...+..+.|
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL   76 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence            3689999999999999999998653   222222  357888887642    368999999999999887666554

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.47  E-value=7.5e-13  Score=75.72  Aligned_cols=71  Identities=24%  Similarity=0.415  Sum_probs=57.1

Q ss_pred             CceEEEecCCcEEEEeEeccCCC-CcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPV-PNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~-p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      |+...+.+|+.+.|.|.+.+.|. +.+.|++++..+..     ..+.|.|.++ .+|+|.|.|.|.|.   ..|..++|.
T Consensus         7 P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-----~~~~l~i~~~-~~dsG~Y~C~a~~~---~~S~~v~l~   77 (78)
T cd05752           7 PPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-----TTNSYRIRAA-NNDSGEYRCQTQGS---SLSDPVHLE   77 (78)
T ss_pred             CCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-----cCCeEEEeec-ccCCEEeEEECCCC---cCCCCEEEe
Confidence            44467889999999999999876 46999999987632     3478899999 99999999999985   326777776


Q ss_pred             E
Q psy15738        184 V  184 (187)
Q Consensus       184 v  184 (187)
                      |
T Consensus        78 V   78 (78)
T cd05752          78 V   78 (78)
T ss_pred             C
Confidence            5

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>KOG4222|consensus

Probab=99.47  E-value=9.1e-13  Score=104.49  Aligned_cols=110  Identities=20%  Similarity=0.309  Sum_probs=86.6

Q ss_pred             EEEEEecccceeEE--eeccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeC--C
Q psy15738         65 ILAMEKEEEERKKK--KKRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNL--P  140 (187)
Q Consensus        65 ~~~v~~~d~g~y~c--~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~--~  140 (187)
                      |.+++..|.|.|.|  .+..+.....+.|+|..+|.+.  ..+....+..|..++|+|.+.|.|+|.+.|.+.+...  .
T Consensus       282 i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~--kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf  359 (1281)
T KOG4222|consen  282 IDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFG--KKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLF  359 (1281)
T ss_pred             ccccCCCcccceeeeccccccccccccceEEecCcccc--cccCccccccCceEEeeeecCCCCCcceEEeccCcceecc
Confidence            66777779999999  4456667788899999999985  4444566778999999999999999999999987632  1


Q ss_pred             ----CC---c-EEEeCcEEEEecCCCCCCeEEEEEEecCCCCcc
Q psy15738        141 ----GG---E-YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSA  176 (187)
Q Consensus       141 ----~~---~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  176 (187)
                          ..   + .....+.|.+.++.+.|.|.|.|...+.+|...
T Consensus       360 ~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~  403 (1281)
T KOG4222|consen  360 SASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSL  403 (1281)
T ss_pred             cCCCCCcCccceecCCCCcccccccccccceEeecccccccccc
Confidence                11   1 112346899999999999999999888888764

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.47  E-value=3e-13  Score=77.16  Aligned_cols=64  Identities=20%  Similarity=0.506  Sum_probs=51.4

Q ss_pred             EEEEeEecc-CCCCcEEEEeCCeeCCCCcEE----E----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeE
Q psy15738        116 VTLECKADG-NPVPNITWTRKNNNLPGGEYS----Y----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASI  180 (187)
Q Consensus       116 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~----~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~  180 (187)
                      +.|.|.+.| .|.|.+.|++++..+......    .    ....|.|.++..+|.|.|.|.|.|..|.. +..+
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~   73 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND-TVTA   73 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCce-eEEE
Confidence            368999999 899999999999877543211    1    23579999999999999999999999987 3554

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.47  E-value=6e-13  Score=77.58  Aligned_cols=71  Identities=18%  Similarity=0.349  Sum_probs=56.1

Q ss_pred             CCcEEEEeEeccC--CCCcEEEEeCCeeCCCCcE----------EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeE
Q psy15738        113 GYSVTLECKADGN--PVPNITWTRKNNNLPGGEY----------SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASI  180 (187)
Q Consensus       113 g~~~~l~C~~~g~--p~p~~~W~~~~~~~~~~~~----------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~  180 (187)
                      |+.+.|.|.+.|.  |.|.+.|.+.+........          ....+.|.|.++..+|+|.|.|.|.|..|.. +.+.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~-~~s~   79 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQ-KEST   79 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCce-EEEE
Confidence            6889999999999  7889999987764432211          0123689999999999999999999999887 5777


Q ss_pred             EEEE
Q psy15738        181 ALHV  184 (187)
Q Consensus       181 ~l~v  184 (187)
                      .|.|
T Consensus        80 ~v~v   83 (84)
T cd05742          80 KVNI   83 (84)
T ss_pred             EEEE
Confidence            7665

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.45  E-value=1.6e-12  Score=76.74  Aligned_cols=77  Identities=14%  Similarity=0.307  Sum_probs=61.0

Q ss_pred             EEEecCCcEEEEeEeccC-----CCCcEEEEeCCeeCCCCcEEE-eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738        108 VEVKKGYSVTLECKADGN-----PVPNITWTRKNNNLPGGEYSY-SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA  181 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~-----p~p~~~W~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~  181 (187)
                      ..+..|....|.|...+.     |.|.+.|++++.++....... ..+.|.|.++..+|+|.|+|.+.|..+.. ...++
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~-~~~~t   83 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK-QYNVT   83 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCE-EEEEE
Confidence            456789999999987542     577999999999887554333 66899999999999999999999998876 35555


Q ss_pred             EEEE
Q psy15738        182 LHVL  185 (187)
Q Consensus       182 l~v~  185 (187)
                      ..+.
T Consensus        84 ~t~~   87 (92)
T cd05757          84 RTIS   87 (92)
T ss_pred             EEEE
Confidence            5443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.42  E-value=2.9e-12  Score=74.87  Aligned_cols=76  Identities=30%  Similarity=0.566  Sum_probs=60.5

Q ss_pred             CceEEEecCCcEEEEeEecc-CCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADG-NPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      +....+.+|+.++|.|.+.+ .|.+.+.|++++..+... .....+.|.|.++..+|+|.|.|.|.|..|.. +..+.|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~-~~~~~l   84 (85)
T cd05754           8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR-AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTD-EATATL   84 (85)
T ss_pred             CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc-ccccCCEEEECCCCHHHCEEEEEEEeccCCeE-eEEEEE
Confidence            34457789999999999875 678899999998665332 22245789999999999999999999999988 466554

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.41  E-value=3.1e-12  Score=74.29  Aligned_cols=67  Identities=18%  Similarity=0.381  Sum_probs=55.9

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC--cEEEeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG--EYSYSGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      |....+..|+++.|.|.+.+ |.+.+.|+++|.++...  +.....+.|.|.+++.+|+|.|.|.+.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            34567889999999999864 67899999999988654  344566789999999999999999999864

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.40  E-value=2.9e-12  Score=74.32  Aligned_cols=74  Identities=19%  Similarity=0.279  Sum_probs=60.2

Q ss_pred             EEEecCCcEEEEeEecc-CCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        108 VEVKKGYSVTLECKADG-NPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      ..+.+|+.++|.|.+.+ .+.+.+.|++++..+...   .....|.|.+++.+|+|.|.|.+.+..+...|..+.|+|
T Consensus         9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~---~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~   83 (83)
T cd05753           9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS---HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV   83 (83)
T ss_pred             ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc---CCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence            36789999999999854 456679999999766432   134689999999999999999999999877678877765

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.39  E-value=7.8e-12  Score=72.72  Aligned_cols=73  Identities=25%  Similarity=0.477  Sum_probs=55.6

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-----E----EEeCcEEEEecCCCCCCeEEEEEEecCCC-CcceeeEEE
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNNNLPGGE-----Y----SYSGNSLTVRHTNRHSAGIYLCVANNMVG-SSAAASIAL  182 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-----~----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g-~~~s~~~~l  182 (187)
                      |+++.|.|.+.+.|.+.+.|++.+.......     .    ......|.|.++..+|+|.|.|.|.|..+ ...+.++.|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            6889999999999999999998765322111     0    01246899999999999999999999876 223678888


Q ss_pred             EEE
Q psy15738        183 HVL  185 (187)
Q Consensus       183 ~v~  185 (187)
                      +|+
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            774

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.37  E-value=1.4e-11  Score=71.84  Aligned_cols=76  Identities=29%  Similarity=0.528  Sum_probs=60.0

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE--E----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS--Y----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA  181 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~--~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~  181 (187)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+......  .    ....|.|.++..+|.|.|.|.+.|..|.. +.++.
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~-~~~~~   82 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSI-NHTYK   82 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceE-EEEEE
Confidence            34567999999999999999999999999876533211  1    12468899999999999999999999986 56776


Q ss_pred             EEE
Q psy15738        182 LHV  184 (187)
Q Consensus       182 l~v  184 (187)
                      |.|
T Consensus        83 l~v   85 (85)
T cd05729          83 VDV   85 (85)
T ss_pred             EeC
Confidence            653

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.37  E-value=1.2e-11  Score=73.37  Aligned_cols=76  Identities=17%  Similarity=0.320  Sum_probs=56.2

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeC---------CCCcEEE-----eCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNL---------PGGEYSY-----SGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~---------~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      ...+..|+++.|.|.+.+.|.|.+.|++.+..+         ...+...     ....|.|.++..+|.|.|.|.+....
T Consensus         6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~~   85 (95)
T cd05882           6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTMP   85 (95)
T ss_pred             cEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEeec
Confidence            467889999999999999999999999877532         1122221     13589999999999999999999832


Q ss_pred             CCcceeeEEEEE
Q psy15738        173 GSSAAASIALHV  184 (187)
Q Consensus       173 g~~~s~~~~l~v  184 (187)
                       .. +..++|.|
T Consensus        86 -~~-~~~~~~~v   95 (95)
T cd05882          86 -VR-TAKATVTV   95 (95)
T ss_pred             -cc-cEEEEEEC
Confidence             22 34555543

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.33  E-value=7e-12  Score=71.62  Aligned_cols=65  Identities=14%  Similarity=0.419  Sum_probs=49.7

Q ss_pred             EEEEeEecc-CCCCcEEEEeCCeeCCCCc-----EEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738        116 VTLECKADG-NPVPNITWTRKNNNLPGGE-----YSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA  181 (187)
Q Consensus       116 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~-----~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~  181 (187)
                      +.|.|.+.+ .|.+.+.|++++..+....     ...    ..+.|.|.++...|+|.|.|.+.|..|.. +.++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~-~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGND-SVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCce-eEEEe
Confidence            368999875 5778999999998774321     111    23579999999999999999999999977 45543

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.33  E-value=5.3e-11  Score=76.03  Aligned_cols=108  Identities=15%  Similarity=0.174  Sum_probs=71.7

Q ss_pred             eEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCC--CcEEEEeCCeeC
Q psy15738         64 YILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPV--PNITWTRKNNNL  139 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~  139 (187)
                      .|.+++.+|.|.|+|..  ........+.|.|..+|.+.....  ......|+.+.|.|.+.|.++  +.+.|++++...
T Consensus         4 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~--~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~   81 (139)
T cd05771           4 TLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLE--KLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD   81 (139)
T ss_pred             EECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCC--CceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence            36788889999999944  334466778899999998754332  233347888999999999744  379999998542


Q ss_pred             CC-----CcE-----E-------EeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        140 PG-----GEY-----S-------YSGNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       140 ~~-----~~~-----~-------~~~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      ..     ...     .       ...+.|.+......+...|.|.+.+..-
T Consensus        82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l  132 (139)
T cd05771          82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL  132 (139)
T ss_pred             ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence            11     111     0       1123455554444456799999987644

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.32  E-value=3.5e-11  Score=71.58  Aligned_cols=78  Identities=21%  Similarity=0.364  Sum_probs=57.3

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe---------eCCCCcEEE-----eCcEEEEecCCCCCCeEEEEEEec
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN---------NLPGGEYSY-----SGNSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~---------~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      ++...+.+|+++.|.|.+.+.|.+.+.|++.+.         ....++...     ...+|.|.++..+|+|.|.|.+.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence            345778999999999999999999999985221         122233321     225799999999999999999998


Q ss_pred             CCCCcceeeEEEEE
Q psy15738        171 MVGSSAAASIALHV  184 (187)
Q Consensus       171 ~~g~~~s~~~~l~v  184 (187)
                      ..+.  +..+.|+|
T Consensus        84 ~~~~--~~~~~l~v   95 (95)
T cd07701          84 MPVK--TSKAYLTV   95 (95)
T ss_pred             ecCc--cEEEEEEC
Confidence            5333  45666654

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.30  E-value=7.5e-11  Score=69.52  Aligned_cols=76  Identities=25%  Similarity=0.409  Sum_probs=57.0

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-----CCCcEEEeCcEEEEecCCCCCCeEEEEEEec-CCCCcceee
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-----PGGEYSYSGNSLTVRHTNRHSAGIYLCVANN-MVGSSAAAS  179 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-----~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n-~~g~~~s~~  179 (187)
                      ....+|+++.|.|.. +.|.|.+.|++...  ..     ...+.....+.|.|.++..+|+|.|.|.+.+ ..+.. ...
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~-~~~   83 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQT-LAK   83 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEE-EEE
Confidence            457889999999996 57889999998432  11     1223334567799999999999999999985 55544 468


Q ss_pred             EEEEEE
Q psy15738        180 IALHVL  185 (187)
Q Consensus       180 ~~l~v~  185 (187)
                      ++|+|.
T Consensus        84 ~~l~v~   89 (91)
T cd05871          84 YTLHVI   89 (91)
T ss_pred             EEEEEe
Confidence            888875

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.29  E-value=1.7e-10  Score=68.58  Aligned_cols=77  Identities=29%  Similarity=0.434  Sum_probs=59.8

Q ss_pred             CceEEEecCCcEEEEeEeccCCCC-cEEEEeCCeeCCCC---cEEE--------eCcEEEEecCCCCC-CeEEEEEEecC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVP-NITWTRKNNNLPGG---EYSY--------SGNSLTVRHTNRHS-AGIYLCVANNM  171 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~---~~~~--------~~~~l~i~~~~~~d-~g~y~C~~~n~  171 (187)
                      .....+.+|+.+.|.|.+.+.|+| .+.|.+++..+...   ++..        ..+.|.|.++...| .|.|.|.|.|.
T Consensus         8 ~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~   87 (98)
T cd05898           8 EQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNS   87 (98)
T ss_pred             CceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeC
Confidence            445678899999999999888877 57898887765332   3322        23679999998877 68999999999


Q ss_pred             CCCcceeeEEE
Q psy15738        172 VGSSAAASIAL  182 (187)
Q Consensus       172 ~g~~~s~~~~l  182 (187)
                      .|.. ...++|
T Consensus        88 ~G~d-~~~i~L   97 (98)
T cd05898          88 FGSG-TAIIQL   97 (98)
T ss_pred             Cccc-eEEEEe
Confidence            9998 477665

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.25  E-value=4.9e-11  Score=70.34  Aligned_cols=69  Identities=22%  Similarity=0.411  Sum_probs=54.8

Q ss_pred             eEEEecCCcEEEEeEe-ccCCCCcEEEEeCCeeC--C-CCcE-EE-eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        107 KVEVKKGYSVTLECKA-DGNPVPNITWTRKNNNL--P-GGEY-SY-SGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~--~-~~~~-~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ...+.+|+.+.|.|.. .|.|.+.+.|++++.+.  . ..+. .. ..+.|.+.++...|+|.|.|.|.|.....
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            3567889999999974 78899999999998753  1 1222 22 35899999999999999999999986544

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.25  E-value=1.5e-10  Score=63.21  Aligned_cols=62  Identities=47%  Similarity=0.861  Sum_probs=50.7

Q ss_pred             cCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-EEeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        112 KGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-SYSGNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      +|+.+.|.|.+.+.|.+.+.|++++..+..... ......|.|.++...|.|.|.|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            478899999998888899999999887763221 12356899999999999999999998764

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.24  E-value=1.3e-10  Score=66.84  Aligned_cols=72  Identities=33%  Similarity=0.628  Sum_probs=58.0

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+..     ....+.+.++...|.|.|.|.+.+..+...+.++.|+|
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~-----~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINS-----SQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEE-----ESSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeee-----eeeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            3578899999999999988899999998866542     22337778888999999999999977655577777765

...

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.21  E-value=1.4e-10  Score=68.39  Aligned_cols=77  Identities=14%  Similarity=0.188  Sum_probs=56.7

Q ss_pred             EEEecCCcEEEEeEe-cc----CCCCcEEEEeCCeeCCCCcE--EE--eCcEEEEecCCCCCCeEEEEEEecCCCCcc--
Q psy15738        108 VEVKKGYSVTLECKA-DG----NPVPNITWTRKNNNLPGGEY--SY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSA--  176 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~-~g----~p~p~~~W~~~~~~~~~~~~--~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~--  176 (187)
                      ..+..|.+..|.|.- .+    .+.|.+.|||++.++.....  ..  ....|.+.++..+|+|.|+|.+.+..|...  
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~   84 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYN   84 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEE
Confidence            345678899999972 33    35679999999998764422  22  236899999999999999999999987653  


Q ss_pred             -eeeEEEEE
Q psy15738        177 -AASIALHV  184 (187)
Q Consensus       177 -s~~~~l~v  184 (187)
                       ++.+.|.|
T Consensus        85 vtr~~~l~v   93 (95)
T cd05897          85 ITRIIKLRI   93 (95)
T ss_pred             EEEEEEEEE
Confidence             44445544

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.18  E-value=6e-10  Score=66.39  Aligned_cols=77  Identities=22%  Similarity=0.408  Sum_probs=55.2

Q ss_pred             ceEEEecCCcEEEEeEeccCCCCcEEEEeCCe---------eCCCCcEEE-----eCcEEEEecCCCCCCeEEEEEEecC
Q psy15738        106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNN---------NLPGGEYSY-----SGNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~---------~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      +...+.+|+++.|.|.+.+.+.+.+.|++.+.         .....++..     ....|.|.++..+|+|.|.|.+.+.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   84 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM   84 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence            35678899999999999888888999985221         112223222     1247999999999999999999976


Q ss_pred             CCCcceeeEEEEE
Q psy15738        172 VGSSAAASIALHV  184 (187)
Q Consensus       172 ~g~~~s~~~~l~v  184 (187)
                      ...  +..+.|+|
T Consensus        85 ~~~--~~~~~~~v   95 (95)
T cd05717          85 PVQ--TAKATVTV   95 (95)
T ss_pred             CCc--eEEEEEEC
Confidence            543  35555554

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.16  E-value=4.8e-10  Score=65.44  Aligned_cols=72  Identities=18%  Similarity=0.259  Sum_probs=53.2

Q ss_pred             CCcEEEEeEeccCCC--CcEEEEeCCeeCCC----C--cE-----EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceee
Q psy15738        113 GYSVTLECKADGNPV--PNITWTRKNNNLPG----G--EY-----SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAAS  179 (187)
Q Consensus       113 g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~----~--~~-----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~  179 (187)
                      |+.+.|.|.+.+.+.  ..+.|...+.....    .  +.     ....+.|.|.++...|+|.|.|.|.|..|.. ...
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~-~~~   79 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIA-KNS   79 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEe-ccc
Confidence            688999999987654  46799876653211    1  00     1124689999999999999999999998877 467


Q ss_pred             EEEEEE
Q psy15738        180 IALHVL  185 (187)
Q Consensus       180 ~~l~v~  185 (187)
                      ..|.|.
T Consensus        80 t~~~V~   85 (86)
T cd05862          80 TIVIVH   85 (86)
T ss_pred             EEEEEe
Confidence            777764

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.13  E-value=3.8e-10  Score=66.48  Aligned_cols=70  Identities=21%  Similarity=0.274  Sum_probs=55.2

Q ss_pred             ceEEEecCCcEEEEeE-eccCCCCcEEEEeCCeeC-CC-CcEEE-eCcEEEEecCCCCCCe-EEEEEEecCCCCc
Q psy15738        106 GKVEVKKGYSVTLECK-ADGNPVPNITWTRKNNNL-PG-GEYSY-SGNSLTVRHTNRHSAG-IYLCVANNMVGSS  175 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~-~~g~p~p~~~W~~~~~~~-~~-~~~~~-~~~~l~i~~~~~~d~g-~y~C~~~n~~g~~  175 (187)
                      +...+.+|+.+.|.|. ..|.|.|.+.|+.++... .. .+... ..+.|.|.++...|+| .|.|.|.|.....
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~   85 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLRT   85 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence            3567899999999997 699999999999876442 22 22222 3589999999999999 8999999986443

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.12  E-value=3.1e-09  Score=62.86  Aligned_cols=78  Identities=18%  Similarity=0.254  Sum_probs=62.4

Q ss_pred             eEEEecCCcEEEEeEeccCCCCc-EEEEeCCeeCCCCcE--E-E-------eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPN-ITWTRKNNNLPGGEY--S-Y-------SGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~~~~~~--~-~-------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ...+..|+.+.|.|.+++.|+|. +.|.+++..+.....  . .       -.+.|.|.+++.+|.|.|+|.|.|..+..
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            56789999999999999999997 999998775432211  1 1       12579999999999999999999998877


Q ss_pred             ceeeEEEEEE
Q psy15738        176 AAASIALHVL  185 (187)
Q Consensus       176 ~s~~~~l~v~  185 (187)
                       +.++.|.|+
T Consensus        92 -s~tF~l~v~  100 (101)
T cd05860          92 -SVTFNVYVN  100 (101)
T ss_pred             -EEEEEEEEe
Confidence             577777664

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.10  E-value=2.1e-09  Score=61.23  Aligned_cols=61  Identities=21%  Similarity=0.376  Sum_probs=47.5

Q ss_pred             cEEEEeEe-ccCCCCcEEEEeCCeeCCCCcE-------EEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        115 SVTLECKA-DGNPVPNITWTRKNNNLPGGEY-------SYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       115 ~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      .+.|.|.. .|.|++.+.||+++..+.....       ....+.|.+......|.+.|.|.|.|.++..
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            36799997 4568899999999998854321       1234578888888888999999999998764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.06  E-value=8.6e-10  Score=65.16  Aligned_cols=67  Identities=16%  Similarity=0.253  Sum_probs=49.9

Q ss_pred             EEecCCcEEEEeEeccCCCCcEEEEeCCeeCCC---------------CcEEE-------eCcEEEEecCCCCCCeEEEE
Q psy15738        109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPG---------------GEYSY-------SGNSLTVRHTNRHSAGIYLC  166 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~---------------~~~~~-------~~~~l~i~~~~~~d~g~y~C  166 (187)
                      .+..|+++.|.|.+.+.+.+.+.|+++++....               .+...       ...+|.|.++..+|+|.|.|
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C   82 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC   82 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence            467899999999999889999999976632110               00000       11359999999999999999


Q ss_pred             EEecCCCCc
Q psy15738        167 VANNMVGSS  175 (187)
Q Consensus       167 ~~~n~~g~~  175 (187)
                      .+.|..+..
T Consensus        83 ~v~~~~~~~   91 (94)
T cd07690          83 EVEDKKEEV   91 (94)
T ss_pred             EECCccceE
Confidence            999876643

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.06  E-value=4.8e-10  Score=63.57  Aligned_cols=66  Identities=8%  Similarity=-0.067  Sum_probs=39.8

Q ss_pred             CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738          2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      .+.|+|+|+|+++|++|...  .+                        ++.+...+.....+.|..+..+|.|.|+|.+.
T Consensus         8 ~G~P~P~i~W~k~~~~i~~~--~~------------------------r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~   61 (75)
T cd05892           8 SAIPPPKIFWKRNNEMVQYN--TD------------------------RISLYQDNSGRVTLLIKNVNKKDAGWYTVSAV   61 (75)
T ss_pred             EecCCCeEEEEECCEECcCC--CC------------------------eEEEEEcCCCcEEEEECCCChhhCEEEEEEEE
Confidence            57899999999999876410  00                        11111111111123388899999999999444


Q ss_pred             --cceeeEEEEEEE
Q psy15738         82 --KKRKKKKKKKEK   93 (187)
Q Consensus        82 --~~~~~~~~~l~v   93 (187)
                        .+..+.++.|.|
T Consensus        62 N~~G~~~~~a~L~V   75 (75)
T cd05892          62 NEAGVATCHARLDV   75 (75)
T ss_pred             cCcCeEEEEEEEeC
Confidence              555555566553

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.04  E-value=5.9e-10  Score=61.34  Aligned_cols=56  Identities=34%  Similarity=0.727  Sum_probs=44.1

Q ss_pred             CCcEEEEeEe-ccCCCCcEEEEeCCeeCCCCcEEE---eCc----EEEEecCCCCCCeEEEEEE
Q psy15738        113 GYSVTLECKA-DGNPVPNITWTRKNNNLPGGEYSY---SGN----SLTVRHTNRHSAGIYLCVA  168 (187)
Q Consensus       113 g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~~~---~~~----~l~i~~~~~~d~g~y~C~~  168 (187)
                      |+++.|.|.+ .+.+.+.+.|++++..........   ...    .|.|.+++.+|+|.|.|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7889999999 666778999999998665443221   112    2999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>smart00410 IG_like Immunoglobulin like

Probab=99.01  E-value=2.5e-08  Score=57.58  Aligned_cols=76  Identities=37%  Similarity=0.722  Sum_probs=58.5

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeC-CeeCC-CCcEEE-e---CcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRK-NNNLP-GGEYSY-S---GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA  181 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~-~~~~~-~~~~~~-~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~  181 (187)
                      ..+..|+.+.|.|.+.+.+.+.+.|+++ +..+. ...... .   ...|.+.++...|.|.|.|.+.+..+... ..+.
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~-~~~~   82 (86)
T smart00410        4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS-STTT   82 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE-EEEE
Confidence            4567899999999999888889999998 66654 222221 2   25799999999999999999998877663 4566


Q ss_pred             EEE
Q psy15738        182 LHV  184 (187)
Q Consensus       182 l~v  184 (187)
                      |.|
T Consensus        83 l~V   85 (86)
T smart00410       83 LTV   85 (86)
T ss_pred             EEE
Confidence            655

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=99.01  E-value=2.5e-08  Score=57.58  Aligned_cols=76  Identities=37%  Similarity=0.722  Sum_probs=58.5

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeC-CeeCC-CCcEEE-e---CcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRK-NNNLP-GGEYSY-S---GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA  181 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~-~~~~~-~~~~~~-~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~  181 (187)
                      ..+..|+.+.|.|.+.+.+.+.+.|+++ +..+. ...... .   ...|.+.++...|.|.|.|.+.+..+... ..+.
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~-~~~~   82 (86)
T smart00409        4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS-STTT   82 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE-EEEE
Confidence            4567899999999999888889999998 66654 222221 2   25799999999999999999998877663 4566


Q ss_pred             EEE
Q psy15738        182 LHV  184 (187)
Q Consensus       182 l~v  184 (187)
                      |.|
T Consensus        83 l~V   85 (86)
T smart00409       83 LTV   85 (86)
T ss_pred             EEE
Confidence            655

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.99  E-value=8.8e-09  Score=61.19  Aligned_cols=75  Identities=20%  Similarity=0.309  Sum_probs=53.7

Q ss_pred             EEEecCCcEEEEeEec-----------cCCCCcEEEEeCCeeCCCC--------cEEEeCcEEEEecCCCCCCeEEEEEE
Q psy15738        108 VEVKKGYSVTLECKAD-----------GNPVPNITWTRKNNNLPGG--------EYSYSGNSLTVRHTNRHSAGIYLCVA  168 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~-----------g~p~p~~~W~~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~  168 (187)
                      ..+.+|+.+.|.|...           ......+.|+|++......        +.......|.+..+..+|+|.|.|.+
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~   89 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL   89 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence            4578899999999961           1123479999997544221        22345788999999999999999999


Q ss_pred             ecCCCCcceeeEEEE
Q psy15738        169 NNMVGSSAAASIALH  183 (187)
Q Consensus       169 ~n~~g~~~s~~~~l~  183 (187)
                      .|...-. ...+.|+
T Consensus        90 rN~t~C~-~~~i~l~  103 (104)
T cd05896          90 RNSTYCM-KVSMSLT  103 (104)
T ss_pred             CCCCcce-EEEEEEE
Confidence            9976543 3454444

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.99  E-value=1.2e-08  Score=58.99  Aligned_cols=62  Identities=23%  Similarity=0.432  Sum_probs=51.1

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEEeCcEEEEecCCCCCCeEEEEEEe
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSYSGNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      ...+..|.++.|.|...+. .+.+.|++++..+... +.......|.|.++...|+|.|.|.+.
T Consensus         5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence            4578899999999998875 5699999999987543 334455668899999999999999987

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.95  E-value=2.2e-08  Score=57.24  Aligned_cols=72  Identities=21%  Similarity=0.362  Sum_probs=52.3

Q ss_pred             EEEEeEeccC-CCCcEEEEeCCeeCCCCcEE--------EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        116 VTLECKADGN-PVPNITWTRKNNNLPGGEYS--------YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       116 ~~l~C~~~g~-p~p~~~W~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      +.|.|.+.|. |++.|.|++++..+......        ...+.|.+..-...|...|.|.|.|+.-........|.|+|
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y   81 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY   81 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence            6789998665 78899999999888654221        12356777555555667999999997644446788999988


Q ss_pred             C
Q psy15738        187 K  187 (187)
Q Consensus       187 ~  187 (187)
                      +
T Consensus        82 ~   82 (82)
T cd05883          82 K   82 (82)
T ss_pred             C
Confidence            5

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.93  E-value=7.2e-09  Score=71.27  Aligned_cols=77  Identities=21%  Similarity=0.343  Sum_probs=57.6

Q ss_pred             eEEEecCCcEEEEeEeccCC-----------CCcEEEEeCCeeC----CCCc----------EEEeCcEEEEecCCCCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNP-----------VPNITWTRKNNNL----PGGE----------YSYSGNSLTVRHTNRHSA  161 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p-----------~p~~~W~~~~~~~----~~~~----------~~~~~~~l~i~~~~~~d~  161 (187)
                      ...+.+|+.+.|.|.+.+.|           .+.+.|++++...    ...+          .......|.|.++...|+
T Consensus        31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds  110 (227)
T PHA02826         31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE  110 (227)
T ss_pred             eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence            45678999999999997754           3489999987541    1010          011246899999999999


Q ss_pred             eEEEEEEecCCCCcceeeEEEEE
Q psy15738        162 GIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       162 g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      |.|.|.|.|..+.. ...+.|.|
T Consensus       111 G~Y~C~a~N~~~~~-~~~i~L~V  132 (227)
T PHA02826        111 GIYICTISSGNICE-ESTIRLTF  132 (227)
T ss_pred             EEEEEEEEECCcce-EEEEEEEE
Confidence            99999999987765 46777766

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.92  E-value=1.3e-08  Score=60.06  Aligned_cols=76  Identities=21%  Similarity=0.250  Sum_probs=55.1

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE--EEeCcEEEEecCCCCCCeEEEEEEecCC-C-CcceeeEEEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY--SYSGNSLTVRHTNRHSAGIYLCVANNMV-G-SSAAASIALH  183 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~-g-~~~s~~~~l~  183 (187)
                      ..+..|+.++|.|... .+...+.|+++|........  ......+.|.+++.+|+|.|.|...+.. + +..|..+.|.
T Consensus        11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~   89 (91)
T cd05751          11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPLELV   89 (91)
T ss_pred             CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECCCCccCCCCCcEEEE
Confidence            4678999999999875 56678999999875332111  1123568999999999999999999863 2 3336666666


Q ss_pred             E
Q psy15738        184 V  184 (187)
Q Consensus       184 v  184 (187)
                      |
T Consensus        90 V   90 (91)
T cd05751          90 V   90 (91)
T ss_pred             e
Confidence            5

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.92  E-value=2.1e-08  Score=57.95  Aligned_cols=68  Identities=26%  Similarity=0.551  Sum_probs=47.1

Q ss_pred             EEEEeEecc-CCCCcEEEEeCCeeCCCCcEEE----------eCcEEEEecCCCCCCeEEEEEEecCCCCcc-eeeEEEE
Q psy15738        116 VTLECKADG-NPVPNITWTRKNNNLPGGEYSY----------SGNSLTVRHTNRHSAGIYLCVANNMVGSSA-AASIALH  183 (187)
Q Consensus       116 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-s~~~~l~  183 (187)
                      +.|.|.+.| .|.+.+.|++++..+.......          ..+.|.+......|.|.|.|.|.|...... ..+++|.
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~   81 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLD   81 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence            578999987 5888999999998765432211          123566776667788999999999764432 3455543

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.91  E-value=3.4e-09  Score=60.13  Aligned_cols=66  Identities=9%  Similarity=-0.036  Sum_probs=39.5

Q ss_pred             CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738          2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      ++.|.|+|+|+++|.++...  .+                        ++.+...+.......|..+..+|.|.|+|.+.
T Consensus         8 ~G~P~P~v~W~k~~~~l~~~--~~------------------------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~   61 (75)
T cd05893           8 SGVPHPQIFWKKENESLTHN--TD------------------------RVSMHQDNCGYICLLIQGATKEDAGWYTVSAK   61 (75)
T ss_pred             eEecCCEEEEEECCEECCCC--CC------------------------eEEEEEcCCCEEEEEECCCCHHHCEEEEEEEE
Confidence            57899999999999877410  00                        11111111001113378899999999999444


Q ss_pred             --cceeeEEEEEEE
Q psy15738         82 --KKRKKKKKKKEK   93 (187)
Q Consensus        82 --~~~~~~~~~l~v   93 (187)
                        .+..+.++.|.|
T Consensus        62 N~~G~~~~~a~L~V   75 (75)
T cd05893          62 NEAGIVSCTARLDV   75 (75)
T ss_pred             cCCCEEEEEEEEeC
Confidence              555556666654

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.91  E-value=3.1e-09  Score=60.64  Aligned_cols=70  Identities=10%  Similarity=0.064  Sum_probs=40.3

Q ss_pred             CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738          2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      .+.|+|+|+|++||++|...   . .+        ...      +..     .........+.|..+...|.|.|+|.+.
T Consensus         8 ~G~P~Pti~W~kng~~l~~~---~-~~--------~~~------~~~-----~~~~~~~~~L~i~~~~~~D~G~YtC~A~   64 (79)
T cd05855           8 KGNPKPTLQWFHEGAILNES---E-YI--------CTK------IHV-----INNTEYHGCLQLDNPTHLNNGIYTLVAK   64 (79)
T ss_pred             eEeCCCceEEEECCEECCCC---c-ce--------eee------eEe-----ecccceEEEEEECCCCcccCEEEEEEEE
Confidence            57899999999999988521   0 00        000      000     0000001112277888899999999776


Q ss_pred             cceeeEEEEEEEE
Q psy15738         82 KKRKKKKKKKEKR   94 (187)
Q Consensus        82 ~~~~~~~~~l~v~   94 (187)
                      ....+....+.+.
T Consensus        65 N~~G~~~~~~~~~   77 (79)
T cd05855          65 NEYGEDEKNVSAH   77 (79)
T ss_pred             cCCcccceEEEee
Confidence            6555555555443

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.87  E-value=7.8e-09  Score=58.70  Aligned_cols=65  Identities=11%  Similarity=-0.043  Sum_probs=38.0

Q ss_pred             CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738          2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      .+.|.|+|.|+++|+++...  .+                        ++.+...+.......|..++.+|.|.|+|.+.
T Consensus         8 ~G~P~P~v~W~k~~~~i~~~--~~------------------------r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   61 (75)
T cd05744           8 SAIPPPQIFWKKNNEMLTYN--TD------------------------RISLYQDNCGRICLLIQNANKEDAGWYTVSAV   61 (75)
T ss_pred             eecCCCeEEEEECCEECCCC--CC------------------------cEEEEEcCCCeEEEEECCCCcccCEEEEEEEE
Confidence            57899999999999876410  00                        01111111111123378899999999999544


Q ss_pred             --cceeeEEEEEE
Q psy15738         82 --KKRKKKKKKKE   92 (187)
Q Consensus        82 --~~~~~~~~~l~   92 (187)
                        .+..+.++.|.
T Consensus        62 N~~G~~~~~~~l~   74 (75)
T cd05744          62 NEAGVVSCNARLD   74 (75)
T ss_pred             cCCCcEEEEEEEe
Confidence              44444445544

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.85  E-value=5.7e-09  Score=58.88  Aligned_cols=60  Identities=13%  Similarity=0.094  Sum_probs=37.4

Q ss_pred             CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738          2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      .+.|+|+|+|+++|+++..    +                       .++.+..++.+.    |..+..+|.|.|+|.+.
T Consensus        11 ~g~P~p~v~W~k~~~~l~~----~-----------------------~r~~~~~~g~L~----I~~v~~~D~G~Y~C~A~   59 (73)
T cd05852          11 KAAPKPKFSWSKGTELLVN----N-----------------------SRISIWDDGSLE----ILNITKLDEGSYTCFAE   59 (73)
T ss_pred             ceeCCCEEEEEeCCEeccc----C-----------------------CCEEEcCCCEEE----ECcCChhHCEEEEEEEE
Confidence            4679999999998875521    0                       122222223333    88888999999999554


Q ss_pred             --cceeeEEEEEE
Q psy15738         82 --KKRKKKKKKKE   92 (187)
Q Consensus        82 --~~~~~~~~~l~   92 (187)
                        .+....++.|+
T Consensus        60 N~~G~~~~~~~l~   72 (73)
T cd05852          60 NNRGKANSTGVLS   72 (73)
T ss_pred             CCCCceeEEEEEE
Confidence              44444555554

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.81  E-value=3.4e-08  Score=57.19  Aligned_cols=34  Identities=12%  Similarity=0.062  Sum_probs=27.7

Q ss_pred             eEEEEEecccceeEEee--ccceeeEEEEEEEEcCC
Q psy15738         64 YILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPP   97 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p   97 (187)
                      .|.+++.+|.|.|+|.+  .....+.++.|.|..||
T Consensus        50 ~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~pP   85 (85)
T cd05853          50 MIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPP   85 (85)
T ss_pred             EEecCCHHHCEEEEEEEEcccCceEEEEEEEEecCC
Confidence            38999999999999944  45666778899998876

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.80  E-value=1.4e-08  Score=57.47  Aligned_cols=61  Identities=10%  Similarity=0.107  Sum_probs=37.8

Q ss_pred             CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738          2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      .+.|.|+++|+++|.++..    +         .              +..+...+.+.    |..+..+|.|.|+|.+.
T Consensus        12 ~g~P~p~i~W~k~g~~~~~----~---------~--------------~~~~~~~~~L~----I~~v~~~D~G~Y~C~A~   60 (74)
T cd05745          12 QGYPQPVIAWTKGGSQLSV----D---------R--------------RHLVLSSGTLR----ISRVALHDQGQYECQAV   60 (74)
T ss_pred             CEecCCEEEEEECCEECCC----C---------C--------------CeEEccCCeEE----EeeCCHHhCEEEEEEEE
Confidence            5789999999999887631    0         0              01111112233    88889999999999554


Q ss_pred             --cceeeEEEEEEE
Q psy15738         82 --KKRKKKKKKKEK   93 (187)
Q Consensus        82 --~~~~~~~~~l~v   93 (187)
                        .+..+.++.|.|
T Consensus        61 N~~G~~~~~~~L~V   74 (74)
T cd05745          61 NIVGSQRTVAQLTV   74 (74)
T ss_pred             eCCCceeEEEEEeC
Confidence              444455555543

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.80  E-value=2.4e-08  Score=56.10  Aligned_cols=60  Identities=10%  Similarity=0.038  Sum_probs=36.5

Q ss_pred             CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738          2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      .+.|.|+++|+++|.++..    .                       .++.+...+.    ..+..+..+|.|.|+|.+.
T Consensus         9 ~G~P~p~v~W~k~g~~~~~----~-----------------------~~~~~~~~~~----l~i~~v~~~D~G~Y~C~A~   57 (71)
T cd05723           9 TGKPTPTVKWVKNGDMVIP----S-----------------------DYFKIVKEHN----LQVLGLVKSDEGFYQCIAE   57 (71)
T ss_pred             EEeCCCEEEEEECCeECCC----C-----------------------CCEEEEecCC----EEEEcCCcccCEEEEEEEE
Confidence            3679999999999886531    0                       0111112122    2367889999999999554


Q ss_pred             --cceeeEEEEEE
Q psy15738         82 --KKRKKKKKKKE   92 (187)
Q Consensus        82 --~~~~~~~~~l~   92 (187)
                        .+..+.++.|.
T Consensus        58 N~~G~~~~~~~L~   70 (71)
T cd05723          58 NDVGNVQASAQLI   70 (71)
T ss_pred             cCCCEEEEEEEEE
Confidence              44444445544

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.80  E-value=2.1e-08  Score=57.73  Aligned_cols=73  Identities=12%  Similarity=0.073  Sum_probs=41.7

Q ss_pred             CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738          2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      -+.|+|+|+|++||++|...   + ...        ..      .. ..  ..........+.|..+..+|.|.|+|.+.
T Consensus         8 ~G~P~P~v~W~k~g~~i~~~---~-~~~--------~~------~~-~~--~~~~~~~~~~L~I~~~~~~D~G~YtC~A~   66 (81)
T cd04971           8 RGNPKPTLTWYHNGAVLNES---D-YIR--------TE------IH-YE--VTTPTEYHGCLQFDNPTHVNNGNYTLVAS   66 (81)
T ss_pred             EeeCCCcEEEEECCEECcCC---C-cee--------EE------EE-ee--cccccccEEEEEECCCCcccCeEEEEEEE
Confidence            37899999999999987521   0 000        00      00 00  00000111123377888999999999776


Q ss_pred             cceeeEEEEEEEEc
Q psy15738         82 KKRKKKKKKKEKRI   95 (187)
Q Consensus        82 ~~~~~~~~~l~v~~   95 (187)
                      ....+....+.|.+
T Consensus        67 N~~G~~~~~~~~~~   80 (81)
T cd04971          67 NEYGQDSKSISAHF   80 (81)
T ss_pred             eCCCCeeeEEEeee
Confidence            66556666665543

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.79  E-value=2e-08  Score=58.50  Aligned_cols=33  Identities=12%  Similarity=0.059  Sum_probs=26.7

Q ss_pred             EEEEEecccceeEEeec--cceeeEEEEEEEEcCC
Q psy15738         65 ILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIPP   97 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~p   97 (187)
                      |..++..|+|.|+|.+.  .+..+..+.|.|..||
T Consensus        51 I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~pP   85 (85)
T cd04970          51 IRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP   85 (85)
T ss_pred             EccCCHHhCeeeEEEEecCCCcEEEEEEEEEECCC
Confidence            88999999999999544  4566778888888776

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.79  E-value=6.3e-08  Score=57.22  Aligned_cols=72  Identities=24%  Similarity=0.349  Sum_probs=51.2

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCeeCCCC-------------------cEE-EeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNNNLPGG-------------------EYS-YSGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-------------------~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      |++++|.|.........+.|++........                   +.. ..+..|.|.+++.+|+|.|.|.+....
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            688999998876556689999876432110                   011 134689999999999999999999887


Q ss_pred             CCcceeeEEEEE
Q psy15738        173 GSSAAASIALHV  184 (187)
Q Consensus       173 g~~~s~~~~l~v  184 (187)
                      +......+.|.|
T Consensus        81 ~~~~~~~~~l~v   92 (92)
T cd05741          81 GVTENAKFFLRV   92 (92)
T ss_pred             CcEEEEEEEEEC
Confidence            655455655543

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.77  E-value=1.7e-08  Score=57.10  Aligned_cols=56  Identities=39%  Similarity=0.697  Sum_probs=40.6

Q ss_pred             CcEEEEeEeccCC-CCcEEEEeCCeeC---CCCcEEEeCcEEEEecCCCCCCeEEEEEEec
Q psy15738        114 YSVTLECKADGNP-VPNITWTRKNNNL---PGGEYSYSGNSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus       114 ~~~~l~C~~~g~p-~p~~~W~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      ..+.|.|.+.+.+ .+.+.|+ +....   .........+.|.+.++..+|.|.|.|.|.|
T Consensus        16 ~~~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   16 GSVTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             eeEEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            3399999999887 7789999 11110   0111122457899999999999999999987

...

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.77  E-value=3.1e-08  Score=57.65  Aligned_cols=33  Identities=12%  Similarity=0.051  Sum_probs=26.6

Q ss_pred             EEEEEecccceeEEe--eccceeeEEEEEEEEcCC
Q psy15738         65 ILAMEKEEEERKKKK--KRKKRKKKKKKKEKRIPP   97 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~--~~~~~~~~~~~l~v~~~p   97 (187)
                      |..++..|.|.|+|.  +..+..+..+.|.|..||
T Consensus        51 I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~P   85 (85)
T cd05854          51 IVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP   85 (85)
T ss_pred             EccCChhhCeEEEEEEecCCCCEEEEEEEEEECCC
Confidence            888999999999994  445666778888888765

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.76  E-value=9.6e-08  Score=57.65  Aligned_cols=77  Identities=19%  Similarity=0.287  Sum_probs=52.2

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCC--------------------CCcE-EEeCcEEEEecCCCCCCeEEEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLP--------------------GGEY-SYSGNSLTVRHTNRHSAGIYLC  166 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~--------------------~~~~-~~~~~~l~i~~~~~~d~g~y~C  166 (187)
                      ..+.+|+++.|.|.........+.|+|+.....                    .++. ...+++|.|.+++..|+|.|.|
T Consensus         8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~   87 (105)
T cd05774           8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTL   87 (105)
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEE
Confidence            356789999999865322233799999642110                    0111 1235789999999999999999


Q ss_pred             EEecCCCCcceeeEEEEE
Q psy15738        167 VANNMVGSSAAASIALHV  184 (187)
Q Consensus       167 ~~~n~~g~~~s~~~~l~v  184 (187)
                      .+.+.........+.|.|
T Consensus        88 ~v~~~~~~~~~~~v~l~V  105 (105)
T cd05774          88 QTITTNFQVEQATVHLQV  105 (105)
T ss_pred             EEEeCCccEEEEEEEEEC
Confidence            999977544445555543

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.68  E-value=8.7e-08  Score=57.58  Aligned_cols=30  Identities=7%  Similarity=0.019  Sum_probs=22.4

Q ss_pred             EEEEEecccceeEEeec--cceeeEEEEEEEE
Q psy15738         65 ILAMEKEEEERKKKKKR--KKRKKKKKKKEKR   94 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~   94 (187)
                      |..+..+|.|.|+|.+.  .+..+.++.|.|.
T Consensus        69 I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~  100 (101)
T cd05859          69 LIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ  100 (101)
T ss_pred             EeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence            88999999999999554  4455556666664

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.68  E-value=3.2e-07  Score=55.72  Aligned_cols=73  Identities=26%  Similarity=0.473  Sum_probs=51.4

Q ss_pred             cCCcEEEEeEeccCC------CCcEEEEeCC---ee---C---CCCc----------EEE-----eCcEEEEecCCCCCC
Q psy15738        112 KGYSVTLECKADGNP------VPNITWTRKN---NN---L---PGGE----------YSY-----SGNSLTVRHTNRHSA  161 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p------~p~~~W~~~~---~~---~---~~~~----------~~~-----~~~~l~i~~~~~~d~  161 (187)
                      .|+++.|.|.....+      .+.+.|++..   ..   +   ....          ...     ...+|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            378999999987653      4579999862   10   0   0000          000     235799999999999


Q ss_pred             eEEEEEEecCCCCcceeeEEEEEE
Q psy15738        162 GIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       162 g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      |.|.|.+.+..+.. ...+.|.|-
T Consensus        81 G~Y~C~v~~~~~~~-~~~v~L~V~  103 (106)
T cd05714          81 GRYRCEVIDGIEDE-QDTVELEVR  103 (106)
T ss_pred             EEEEEEEEcCCCce-EEEEEEEEE
Confidence            99999999986655 578888774

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.67  E-value=1.1e-07  Score=57.14  Aligned_cols=31  Identities=6%  Similarity=-0.053  Sum_probs=23.7

Q ss_pred             eEEEEEecccceeEEeec--cceeeEEEEEEEE
Q psy15738         64 YILAMEKEEEERKKKKKR--KKRKKKKKKKEKR   94 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~   94 (187)
                      .|..+..+|.|.|+|.+.  .+..+.++.|.|.
T Consensus        68 ~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~  100 (101)
T cd04975          68 KLVRLKESEAGTYTFLASNSDASKSLTFELYVN  100 (101)
T ss_pred             EEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence            388999999999999554  5556667777765

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.65  E-value=8.9e-08  Score=54.17  Aligned_cols=63  Identities=16%  Similarity=0.145  Sum_probs=36.4

Q ss_pred             CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738          2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      .+.|.|+++|+++|+++..   .. ...                       +.... ......|..+..+|.|.|+|.+.
T Consensus         9 ~G~P~p~v~W~k~g~~l~~---~~-~~~-----------------------~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~   60 (74)
T cd05748           9 SGRPTPTVTWSKDGKPLKL---SG-RVQ-----------------------IETTA-SSTSLVIKNAERSDSGKYTLTLK   60 (74)
T ss_pred             eeeCCCeEEEEECCEEcCC---CC-eEE-----------------------EEECC-CeEEEEECCCCcCcCEEEEEEEE
Confidence            4789999999999987631   00 010                       00100 11222377888899999999554


Q ss_pred             c--ceeeEEEEEE
Q psy15738         82 K--KRKKKKKKKE   92 (187)
Q Consensus        82 ~--~~~~~~~~l~   92 (187)
                      .  +..+.++.|.
T Consensus        61 N~~G~~~~~~~l~   73 (74)
T cd05748          61 NPAGEKSATINVK   73 (74)
T ss_pred             CCCccEEEEEEEE
Confidence            4  4444444443

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=98.64  E-value=1.2e-07  Score=55.31  Aligned_cols=28  Identities=14%  Similarity=0.055  Sum_probs=18.7

Q ss_pred             eEEEEEecccceeEEeeccceeeEEEEE
Q psy15738         64 YILAMEKEEEERKKKKKRKKRKKKKKKK   91 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~~~~~~~~~~l   91 (187)
                      .|..+..+|.|.|+|.+.....+....+
T Consensus        55 ~I~~~~~~D~G~Y~c~a~N~~G~~~~~~   82 (86)
T cd05894          55 VIEGAEREDEGVYTITVTNPVGEDHASL   82 (86)
T ss_pred             EECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence            3788899999999995554333333333

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.63  E-value=3.7e-07  Score=55.69  Aligned_cols=68  Identities=21%  Similarity=0.421  Sum_probs=50.4

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCee---------------CCCCcEEE------eCcEEEEecCCCCCCeE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNN---------------LPGGEYSY------SGNSLTVRHTNRHSAGI  163 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~---------------~~~~~~~~------~~~~l~i~~~~~~d~g~  163 (187)
                      +....+.+|+++.|.|.+.+.+...+.|++....               ...++...      ....|.|.+++.+|+|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~   84 (109)
T cd04983           5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAV   84 (109)
T ss_pred             CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEE
Confidence            4456788999999999998877778999985421               01122211      13479999999999999


Q ss_pred             EEEEEecCC
Q psy15738        164 YLCVANNMV  172 (187)
Q Consensus       164 y~C~~~n~~  172 (187)
                      |.|.+.+..
T Consensus        85 Y~C~~~~~~   93 (109)
T cd04983          85 YFCALSESG   93 (109)
T ss_pred             EEEEEecCC
Confidence            999999764

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=98.63  E-value=1.1e-07  Score=56.19  Aligned_cols=31  Identities=10%  Similarity=-0.005  Sum_probs=21.0

Q ss_pred             eeEEEEEecccceeEEeeccceeeEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKKRKKRKKKKKKKEK   93 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v   93 (187)
                      ..|..+..+|.|.|+|.+.....+....+.|
T Consensus        60 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v   90 (92)
T cd05737          60 LTIKGVSSEDSGKYGIVVKNKYGGETVDVTV   90 (92)
T ss_pred             EEEccCChhhCEEEEEEEEECCCcceEEEEE
Confidence            3478889999999999665444444444443

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.63  E-value=8.9e-08  Score=54.48  Aligned_cols=63  Identities=13%  Similarity=0.086  Sum_probs=37.4

Q ss_pred             CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738          2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      .+.|.|+++|+++|.++.....             ..           ++.. ..+.+.    |..++.+|.|.|+|.+.
T Consensus        11 ~G~P~p~i~W~k~g~~i~~~~~-------------~~-----------~~~~-~~~~L~----I~~~~~~D~G~Y~C~a~   61 (76)
T cd05867          11 EGIPTPNITWSINGAPIEGTDP-------------DP-----------RRHV-SSGALI----LTDVQPSDTAVYQCEAR   61 (76)
T ss_pred             eEeCCCeEEEEECCEECCCCCC-------------Cc-----------eEEe-eCCEEE----ECCCChhhCEEEEEEEE
Confidence            4689999999999997742100             00           0111 112233    77788889999999544


Q ss_pred             --cceeeEEEEEEE
Q psy15738         82 --KKRKKKKKKKEK   93 (187)
Q Consensus        82 --~~~~~~~~~l~v   93 (187)
                        .+.....+.|.|
T Consensus        62 N~~G~~~~~~~l~V   75 (76)
T cd05867          62 NRHGNLLANAHVHV   75 (76)
T ss_pred             CCCCeEEEEEEEEE
Confidence              444444555544

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.63  E-value=1.1e-06  Score=53.64  Aligned_cols=73  Identities=19%  Similarity=0.371  Sum_probs=50.4

Q ss_pred             cCCcEEEEeEeccCC------------CCcEEEEeCCe--e---C---C-----C----CcEEE-------eCcEEEEec
Q psy15738        112 KGYSVTLECKADGNP------------VPNITWTRKNN--N---L---P-----G----GEYSY-------SGNSLTVRH  155 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p------------~p~~~W~~~~~--~---~---~-----~----~~~~~-------~~~~l~i~~  155 (187)
                      .|++++|.|......            .+.+.|++...  .   +   .     .    ++...       ...+|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            378899999876432            35799997421  0   0   0     0    11111       246899999


Q ss_pred             CCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        156 TNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       156 ~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      ++.+|+|.|.|.+.+..+.. +..+.|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~-~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDN-YDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCc-eeEEEEEEE
Confidence            99999999999999877766 577777664

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.62  E-value=1e-06  Score=52.14  Aligned_cols=65  Identities=17%  Similarity=0.323  Sum_probs=47.8

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCee---------CCCCcEEE-e----CcEEEEecCCCCCCeEEEEEEecC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNN---------LPGGEYSY-S----GNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~---------~~~~~~~~-~----~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      ...+.+|+++.|.|.+.+.....+.|++-+..         ....++.. .    ..+|.|.++..+|.|.|.|.+...
T Consensus         6 nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           6 DVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             ceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            46788999999999999876666777765532         22223321 1    235999999999999999999863

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.62  E-value=5.5e-07  Score=54.67  Aligned_cols=73  Identities=22%  Similarity=0.407  Sum_probs=51.2

Q ss_pred             cCCcEEEEeEeccCC------CCcEEEEeCCee--------CC-----------CCcEEEe-----CcEEEEecCCCCCC
Q psy15738        112 KGYSVTLECKADGNP------VPNITWTRKNNN--------LP-----------GGEYSYS-----GNSLTVRHTNRHSA  161 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p------~p~~~W~~~~~~--------~~-----------~~~~~~~-----~~~l~i~~~~~~d~  161 (187)
                      .|++++|.|.....|      ...+.|++....        ..           .++....     ...|.|.++..+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            378999999876653      346899986410        00           0111111     24799999999999


Q ss_pred             eEEEEEEecCCCCcceeeEEEEEE
Q psy15738        162 GIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       162 g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      |.|.|.+.+..+.. ...+.|.|-
T Consensus        81 G~Y~C~v~~~~~~~-~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDE-SVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccce-EEEEEEEEE
Confidence            99999999988876 577777764

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.62  E-value=5.2e-07  Score=55.20  Aligned_cols=67  Identities=27%  Similarity=0.495  Sum_probs=49.0

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-----------------CCCcEEE-----eCcEEEEecCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-----------------PGGEYSY-----SGNSLTVRHTNRHS  160 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-----------------~~~~~~~-----~~~~l~i~~~~~~d  160 (187)
                      +....+.+|+.+.|.|.+.+ +.+.+.||+...  .+                 ...+...     ....|.|.++..+|
T Consensus         5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~D   83 (110)
T cd05899           5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPED   83 (110)
T ss_pred             CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhh
Confidence            44567889999999999987 677899998542  10                 0111211     12479999999999


Q ss_pred             CeEEEEEEecCC
Q psy15738        161 AGIYLCVANNMV  172 (187)
Q Consensus       161 ~g~y~C~~~n~~  172 (187)
                      +|.|.|.+.+..
T Consensus        84 sg~Y~Ca~~~~~   95 (110)
T cd05899          84 SAVYLCASSLGG   95 (110)
T ss_pred             CEEEEEEeeCCC
Confidence            999999998753

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.60  E-value=1e-07  Score=53.14  Aligned_cols=51  Identities=18%  Similarity=0.160  Sum_probs=32.1

Q ss_pred             CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738          2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      .++|.|.++|+++|.++..    .                       .++.+...+.    ..|..+..+|.|.|+|.+.
T Consensus         8 ~g~P~p~i~W~k~g~~~~~----~-----------------------~~~~~~~~~~----L~I~~~~~~D~G~Y~C~a~   56 (69)
T cd05746           8 QGDPEPTITWNKDGVQVTE----S-----------------------GKFHISPEGY----LAIRDVGVADQGRYECVAR   56 (69)
T ss_pred             eEeCCCEEEEEECCEECCC----C-----------------------CCEEECCCCE----EEECcCChhhCEEEEEEEE
Confidence            4789999999999886631    0                       0111111122    2377888889999999555


Q ss_pred             cc
Q psy15738         82 KK   83 (187)
Q Consensus        82 ~~   83 (187)
                      ..
T Consensus        57 N~   58 (69)
T cd05746          57 NT   58 (69)
T ss_pred             CC
Confidence            43

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.59  E-value=3.5e-07  Score=53.80  Aligned_cols=72  Identities=13%  Similarity=0.038  Sum_probs=43.7

Q ss_pred             CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738          2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      .++|.|++.|+++|..+...         .. ....         ...++.+...+.+.    |..+..+|.|.|+|.+.
T Consensus        11 ~g~P~p~v~W~k~g~~~~~~---------~~-~~~~---------~~~r~~v~~~~~L~----I~~v~~~D~G~Y~C~a~   67 (90)
T cd05726          11 TGNPQPAIFWQKEGSQNLLF---------SY-QPPQ---------SSSRFSVSQTGDLT----ITNVQRSDVGYYICQTL   67 (90)
T ss_pred             CccCCCEEEEEeCCCcceee---------cc-cCCC---------CCCeEEECCCCeEE----EeeCChhhCEEEEEEEE
Confidence            57899999999987643210         00 0000         01233332223333    88999999999999544


Q ss_pred             --cceeeEEEEEEEEcC
Q psy15738         82 --KKRKKKKKKKEKRIP   96 (187)
Q Consensus        82 --~~~~~~~~~l~v~~~   96 (187)
                        .+.....+.|.|...
T Consensus        68 N~~G~~~~~~~l~V~~~   84 (90)
T cd05726          68 NVAGSILTKAYLEVTDV   84 (90)
T ss_pred             cCCCceEEEEEEEEeec
Confidence              455667788888743

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.59  E-value=7.7e-08  Score=54.45  Aligned_cols=63  Identities=13%  Similarity=0.062  Sum_probs=37.6

Q ss_pred             CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738          2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      .+.|.|+|+|+++|.++...  .+                       .++....++.    ..|..++.+|.|.|+|.+.
T Consensus         8 ~G~P~p~v~W~k~~~~~~~~--~~-----------------------~~~~~~~~g~----L~i~~~~~~D~G~Y~C~a~   58 (74)
T cd05738           8 SGNPDPEITWFKDFLPVDTT--SN-----------------------GRIKQLRSGA----LQIENSEESDQGKYECVAT   58 (74)
T ss_pred             eEecCCEEEEEECCEECccC--CC-----------------------CCEEEcCCcE----EEECCCChhhCEEEEEEEE
Confidence            46899999999998876311  00                       1111112122    2366788889999999544


Q ss_pred             ---cceeeEEEEEEE
Q psy15738         82 ---KKRKKKKKKKEK   93 (187)
Q Consensus        82 ---~~~~~~~~~l~v   93 (187)
                         +...+..+.|.|
T Consensus        59 N~~G~~~s~~a~l~v   73 (74)
T cd05738          59 NSAGTRYSAPANLYV   73 (74)
T ss_pred             CCCCceEcccEEEEE
Confidence               233455666655

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.58  E-value=3e-07  Score=53.84  Aligned_cols=34  Identities=15%  Similarity=0.099  Sum_probs=26.3

Q ss_pred             EEEEEecccceeEE--eeccceeeEEEEEEEEcCCe
Q psy15738         65 ILAMEKEEEERKKK--KKRKKRKKKKKKKEKRIPPR   98 (187)
Q Consensus        65 ~~~v~~~d~g~y~c--~~~~~~~~~~~~l~v~~~p~   98 (187)
                      |..+..+|.|.|+|  .+..+.....+.|.|..+|.
T Consensus        51 I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~   86 (88)
T cd05735          51 ILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPD   86 (88)
T ss_pred             ECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCC
Confidence            77788999999999  44566667778888876653

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.58  E-value=1.5e-07  Score=53.59  Aligned_cols=63  Identities=6%  Similarity=0.001  Sum_probs=37.6

Q ss_pred             CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEee-
Q psy15738          2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKK-   80 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~-   80 (187)
                      .++|.|+|+|++||+++...  ..           +..       +     ....+    ...+..++..|.|.|+|.+ 
T Consensus        11 ~G~P~P~i~W~k~g~~i~~~--~~-----------~~~-------~-----~~~~~----~l~i~~v~~~D~G~Y~C~A~   61 (76)
T cd05868          11 NGNPKPSISWLTNGVPIEIA--PT-----------DPS-------R-----KVDGD----TIIFSKVQERSSAVYQCNAS   61 (76)
T ss_pred             eEeCCCeEEEEECCEEcccc--CC-----------Cce-------E-----EecCC----EEEECCCCHhhCEEEEEEEE
Confidence            47899999999999987411  00           000       0     00101    1225677888999999944 


Q ss_pred             -ccceeeEEEEEEE
Q psy15738         81 -RKKRKKKKKKKEK   93 (187)
Q Consensus        81 -~~~~~~~~~~l~v   93 (187)
                       ..+....++.|.|
T Consensus        62 N~~G~~~~~~~l~v   75 (76)
T cd05868          62 NEYGYLLANAFVNV   75 (76)
T ss_pred             cCCCEEEEEEEEEe
Confidence             4555555666655

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.56  E-value=1.4e-07  Score=52.85  Aligned_cols=18  Identities=28%  Similarity=0.228  Sum_probs=15.6

Q ss_pred             CCCCCCeeEEEEcCeeee
Q psy15738          2 FADSRPESTFWIFGKPIT   19 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~   19 (187)
                      .|.|+|++.|+++|.++.
T Consensus         8 ~g~P~P~v~W~kdg~~l~   25 (72)
T cd07702           8 KAFPAPEVIWLKDGLPAA   25 (72)
T ss_pred             EEcCCCeEEEEECCEECC
Confidence            478999999999998774

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.56  E-value=2.2e-07  Score=51.79  Aligned_cols=29  Identities=7%  Similarity=0.004  Sum_probs=19.1

Q ss_pred             eEEEEEecccceeEEeecc--ceeeEEEEEE
Q psy15738         64 YILAMEKEEEERKKKKKRK--KRKKKKKKKE   92 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~~--~~~~~~~~l~   92 (187)
                      .|..+..+|.|.|+|.+..  +....++.|.
T Consensus        38 ~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   68 (69)
T cd05725          38 KIRNVTAGDEGSYTCEAENMVGKIEASASLT   68 (69)
T ss_pred             EECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence            3778888999999995543  3344444443

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.56  E-value=1.8e-07  Score=52.51  Aligned_cols=61  Identities=8%  Similarity=0.018  Sum_probs=37.3

Q ss_pred             CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738          2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      .+.|.|++.|+++|.++...               ...      .      ......+.    |..++.+|.|.|+|.+.
T Consensus         8 ~G~P~P~v~W~k~~~~~~~~---------------~~~------~------~~~~~~L~----I~~v~~~D~G~Y~C~a~   56 (71)
T cd05876           8 EGLPTPEVHWDRIDGPLSPN---------------RTK------K------LNNNKTLQ----LDNVLESDDGEYVCTAE   56 (71)
T ss_pred             eEecCCeEEEEECCcCCCCC---------------cee------E------EcCCCEEE----EcccCHHhCEEEEEEEE
Confidence            47899999999998765310               000      0      00112222    77888899999999444


Q ss_pred             --cceeeEEEEEEE
Q psy15738         82 --KKRKKKKKKKEK   93 (187)
Q Consensus        82 --~~~~~~~~~l~v   93 (187)
                        .+..+.++.|.|
T Consensus        57 N~~G~~~~~~~l~V   70 (71)
T cd05876          57 NSEGSARHHYTVTV   70 (71)
T ss_pred             cCCCeEEEEEEEEE
Confidence              455555566555

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.55  E-value=1.4e-06  Score=53.60  Aligned_cols=69  Identities=20%  Similarity=0.301  Sum_probs=48.0

Q ss_pred             eEEEecCCcEEEEeEeccCC----CCcEEEEe---------------CCeeCC--CC----cEEE------eCcEEEEec
Q psy15738        107 KVEVKKGYSVTLECKADGNP----VPNITWTR---------------KNNNLP--GG----EYSY------SGNSLTVRH  155 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p----~p~~~W~~---------------~~~~~~--~~----~~~~------~~~~l~i~~  155 (187)
                      ...+..|+++.|.|......    ...+.|.+               +|....  .+    +...      ...+|.|.+
T Consensus         7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n   86 (116)
T cd05879           7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN   86 (116)
T ss_pred             eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence            45678899999999986532    34799933               232221  01    1111      235799999


Q ss_pred             CCCCCCeEEEEEEecCCCCc
Q psy15738        156 TNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       156 ~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ++.+|.|.|.|.+.|+.+..
T Consensus        87 v~~sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          87 LDYTDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             CCcccCEEEEEEEEcCCCcC
Confidence            99999999999999987654

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.55  E-value=1.9e-07  Score=52.71  Aligned_cols=59  Identities=14%  Similarity=0.100  Sum_probs=35.3

Q ss_pred             CCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeecc
Q psy15738          3 ADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRK   82 (187)
Q Consensus         3 ~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~   82 (187)
                      +.|.|+++|+++|+++..    +                       .++.+...+.    ..|..+..+|.|.|+|.+..
T Consensus        12 g~P~p~v~W~k~~~~~~~----~-----------------------~~~~~~~~~~----L~i~~v~~~D~G~Y~C~a~N   60 (73)
T cd04969          12 AAPKPTISWSKGTELLTN----S-----------------------SRICIWPDGS----LEILNVTKSDEGKYTCFAEN   60 (73)
T ss_pred             EcCCCEEEEEECCEEccc----C-----------------------CCEEECCCCe----EEEccCChhHCEEEEEEEEC
Confidence            578899999999886531    0                       0111112122    33788899999999995544


Q ss_pred             --ceeeEEEEEE
Q psy15738         83 --KRKKKKKKKE   92 (187)
Q Consensus        83 --~~~~~~~~l~   92 (187)
                        +....++.|.
T Consensus        61 ~~G~~~~~~~l~   72 (73)
T cd04969          61 FFGKANSTGSLS   72 (73)
T ss_pred             CCCceEEEEEEE
Confidence              3334444443

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.53  E-value=1.2e-07  Score=52.37  Aligned_cols=18  Identities=33%  Similarity=0.359  Sum_probs=15.7

Q ss_pred             CCCCCCeeEEEEcCeeee
Q psy15738          2 FADSRPESTFWIFGKPIT   19 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~   19 (187)
                      .+.|.|.++|++||++|.
T Consensus         8 ~g~P~P~v~W~kdg~~l~   25 (67)
T cd05863           8 AAYPPPEFQWYKDGKLIS   25 (67)
T ss_pred             EEeCCCEEEEEECCEECc
Confidence            478999999999999874

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.53  E-value=2.5e-06  Score=52.58  Aligned_cols=79  Identities=23%  Similarity=0.461  Sum_probs=51.2

Q ss_pred             CceEEEecCCcEEEEeEeccCC----CCcEEEEeC---Cee---C----------CCCcE----EE------eCcEEEEe
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP----VPNITWTRK---NNN---L----------PGGEY----SY------SGNSLTVR  154 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p----~p~~~W~~~---~~~---~----------~~~~~----~~------~~~~l~i~  154 (187)
                      +..+.+.+|+++.|.|.....+    ...+.|++.   +..   +          ..+++    ..      ....|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            3456788999999999975433    235899752   111   0          01011    11      13469999


Q ss_pred             cCCCCCCeEEEEEEecCCCCcc-eeeEEEE
Q psy15738        155 HTNRHSAGIYLCVANNMVGSSA-AASIALH  183 (187)
Q Consensus       155 ~~~~~d~g~y~C~~~n~~g~~~-s~~~~l~  183 (187)
                      +++.+|+|.|.|.+.|..+... ...+.|.
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  114 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPDVHGPIGEIRLR  114 (115)
T ss_pred             eCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence            9999999999999998766421 3455554

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.52  E-value=2.1e-07  Score=54.77  Aligned_cols=30  Identities=3%  Similarity=-0.068  Sum_probs=22.1

Q ss_pred             eEEEEEecccceeEEee--ccceeeEEEEEEE
Q psy15738         64 YILAMEKEEEERKKKKK--RKKRKKKKKKKEK   93 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v   93 (187)
                      .|..++.+|.|.|+|.+  ..+....++.|+|
T Consensus        58 ~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V   89 (90)
T cd04974          58 YLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV   89 (90)
T ss_pred             EEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence            37778889999999944  4555566677766

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.51  E-value=1.4e-06  Score=52.11  Aligned_cols=71  Identities=25%  Similarity=0.495  Sum_probs=48.0

Q ss_pred             CcEEEEeEeccCC---CCcEEEEeCCee---------------CCC---CcEEE-----eCcEEEEecCCCCCCeEEEEE
Q psy15738        114 YSVTLECKADGNP---VPNITWTRKNNN---------------LPG---GEYSY-----SGNSLTVRHTNRHSAGIYLCV  167 (187)
Q Consensus       114 ~~~~l~C~~~g~p---~p~~~W~~~~~~---------------~~~---~~~~~-----~~~~l~i~~~~~~d~g~y~C~  167 (187)
                      +++.|.|.....+   ...+.|++....               ...   .+...     ....|.|.++..+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4678999876654   336889985421               000   11111     235899999999999999999


Q ss_pred             Eec-CCCCcceeeEEEEEE
Q psy15738        168 ANN-MVGSSAAASIALHVL  185 (187)
Q Consensus       168 ~~n-~~g~~~s~~~~l~v~  185 (187)
                      +.. +.|.. ...+.|.|+
T Consensus        81 v~~~~~g~~-~~~~~l~V~   98 (98)
T cd05718          81 FATFPQGNR-QKVTTLTVL   98 (98)
T ss_pred             EEeCCCCcE-EEEEEEEeC
Confidence            875 55666 577777774

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.49  E-value=4.3e-06  Score=51.65  Aligned_cols=79  Identities=19%  Similarity=0.396  Sum_probs=50.7

Q ss_pred             CceEEEecCCcEEEEeEeccCC----CCcEEEEeCCe------eC-----------CCCcE----EE------eCcEEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP----VPNITWTRKNN------NL-----------PGGEY----SY------SGNSLTV  153 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p----~p~~~W~~~~~------~~-----------~~~~~----~~------~~~~l~i  153 (187)
                      +..+.+..|+.+.|.|......    ...+.|++...      .+           ...++    ..      ....|.|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            3346778999999999875432    24589986321      00           01111    01      1246999


Q ss_pred             ecCCCCCCeEEEEEEecCCCCcc-eeeEEEE
Q psy15738        154 RHTNRHSAGIYLCVANNMVGSSA-AASIALH  183 (187)
Q Consensus       154 ~~~~~~d~g~y~C~~~n~~g~~~-s~~~~l~  183 (187)
                      .++..+|.|.|.|.+.|.-+... +..+.|.
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  115 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR  115 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence            99999999999999998765432 3445554

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.48  E-value=2.2e-06  Score=50.78  Aligned_cols=76  Identities=20%  Similarity=0.229  Sum_probs=51.0

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-----EEeCcEEEEecCCCCCCeEEEEEEecC----CCCccee
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-----SYSGNSLTVRHTNRHSAGIYLCVANNM----VGSSAAA  178 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~n~----~g~~~s~  178 (187)
                      ..+..|+.++|.|.... +...+.|+|++........     ......+.|..++..|+|.|.|.....    .-+..|.
T Consensus        10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~~~~~~~wS~~Sd   88 (94)
T cd05711          10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSYNHSLYEWSAPSD   88 (94)
T ss_pred             CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEECCCCCccccCCCC
Confidence            46789999999998754 4457999999865322110     012346799999999999999997522    1223356


Q ss_pred             eEEEEE
Q psy15738        179 SIALHV  184 (187)
Q Consensus       179 ~~~l~v  184 (187)
                      .+.|.|
T Consensus        89 pl~l~V   94 (94)
T cd05711          89 PLKIVV   94 (94)
T ss_pred             CeEEeC
Confidence            666543

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.48  E-value=3.9e-07  Score=51.76  Aligned_cols=63  Identities=10%  Similarity=0.029  Sum_probs=37.4

Q ss_pred             CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738          2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      .+.|.|+|.|+++|+++....  .           +..      .      ....+.+    .|..++.+|.|.|+|.+.
T Consensus        11 ~g~P~p~i~W~~~g~~~~~~~--~-----------~~~------~------~~~~~~L----~i~~v~~~D~G~Y~C~A~   61 (76)
T cd04978          11 EGIPQPTITWRLNGVPIEELP--P-----------DPR------R------RVDGGTL----ILSNVQPNDTAVYQCNAS   61 (76)
T ss_pred             eeeCCCEEEEEECCEECCCCC--C-----------cce------E------EccCCEE----EECCCChhhCEEEEEEEE
Confidence            578999999999998764210  0           000      0      0011122    267788889999999554


Q ss_pred             --cceeeEEEEEEE
Q psy15738         82 --KKRKKKKKKKEK   93 (187)
Q Consensus        82 --~~~~~~~~~l~v   93 (187)
                        .+.....+.|.|
T Consensus        62 N~~G~~~~~~~l~V   75 (76)
T cd04978          62 NVHGYLLANAFVHV   75 (76)
T ss_pred             ccCCeEEEeEEEEE
Confidence              444445555554

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.47  E-value=8.1e-07  Score=50.34  Aligned_cols=30  Identities=7%  Similarity=0.042  Sum_probs=21.6

Q ss_pred             eEEEEEecccceeEEeec--cceeeEEEEEEE
Q psy15738         64 YILAMEKEEEERKKKKKR--KKRKKKKKKKEK   93 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v   93 (187)
                      .|..+..+|.|.|+|.+.  .+..+..+.|.|
T Consensus        43 ~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763          43 FIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             EEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            378889999999999554  444555666655

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.47  E-value=3.4e-06  Score=48.68  Aligned_cols=59  Identities=20%  Similarity=0.434  Sum_probs=40.2

Q ss_pred             EEEEeEeccC-CCCcEEEEeCCeeCCCCcEE---------EeCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        116 VTLECKADGN-PVPNITWTRKNNNLPGGEYS---------YSGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       116 ~~l~C~~~g~-p~p~~~W~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      +.|.|.+.+. |.+.+.|++++..+......         ...+.|.+......+.+.|.|.+.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            5789999765 88899999999877533211         11233444444445567999999998654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.47  E-value=7.7e-07  Score=52.97  Aligned_cols=32  Identities=6%  Similarity=-0.087  Sum_probs=23.4

Q ss_pred             ceeEEEEEecccceeEEeec---cceeeEEEEEEE
Q psy15738         62 LSYILAMEKEEEERKKKKKR---KKRKKKKKKKEK   93 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v   93 (187)
                      .+.|..++.+|.|.|+|.+.   ++....++.|.|
T Consensus        61 ~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          61 TLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI   95 (96)
T ss_pred             EEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence            34488999999999999554   355566666665

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.46  E-value=1.1e-06  Score=52.49  Aligned_cols=73  Identities=23%  Similarity=0.335  Sum_probs=51.7

Q ss_pred             cCCcEEEEeEecc-CCCCcEEEEeCCeeC----C----CC----------cEEE--eCcEEEEecCCCCCCeEEEEEEec
Q psy15738        112 KGYSVTLECKADG-NPVPNITWTRKNNNL----P----GG----------EYSY--SGNSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus       112 ~g~~~~l~C~~~g-~p~p~~~W~~~~~~~----~----~~----------~~~~--~~~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      .|++++|.|.... .....+.|++....+    .    ..          +...  .+.+|.|.+++.+|+|.|.|.+.+
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~   82 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT   82 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence            5889999998754 334568899864321    0    00          0111  236799999999999999999999


Q ss_pred             CCCCcceeeEEEEE
Q psy15738        171 MVGSSAAASIALHV  184 (187)
Q Consensus       171 ~~g~~~s~~~~l~v  184 (187)
                      ..|......+.|.|
T Consensus        83 ~~~~~~~~~f~L~v   96 (97)
T cd05775          83 KNGVTITKEFTLHI   96 (97)
T ss_pred             CCCCeEEEEEEEEe
Confidence            88777667777776

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.46  E-value=1.1e-06  Score=51.08  Aligned_cols=29  Identities=0%  Similarity=-0.122  Sum_probs=19.8

Q ss_pred             EEEEEecccceeEEeec--cceeeEEEEEEE
Q psy15738         65 ILAMEKEEEERKKKKKR--KKRKKKKKKKEK   93 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v   93 (187)
                      |..+..+|.|.|+|.+.  .+....++.|+|
T Consensus        55 i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   85 (85)
T cd05857          55 MESVVPSDKGNYTCVVENEYGSINHTYHLDV   85 (85)
T ss_pred             EccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence            66788899999999554  444555555543

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>PHA03376 BARF1; Provisional

Probab=98.44  E-value=8.2e-06  Score=53.43  Aligned_cols=89  Identities=12%  Similarity=0.169  Sum_probs=50.6

Q ss_pred             eeccEEEeeccccccceeEEEEEecccceeEEe-eccceeeEEE-EEEEEcCCeeEEecCCceEEEecCCcEEEEeEecc
Q psy15738         47 TSCSYIILATSLLHYLSYILAMEKEEEERKKKK-KRKKRKKKKK-KKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADG  124 (187)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~-~~~~~~~~~~-~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g  124 (187)
                      |.++..+.... .....-|.+++.+|.|.|+|. +.+.+..... .|++- .|........+ -..+..+...+.|...|
T Consensus        74 yRGrtD~~~~~-gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V-~~~~Lsv~a~~-~dFp~~~~~~i~C~sgg  150 (221)
T PHA03376         74 FRGFFDIHRSA-NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV-KPLTLSVHSER-SQFPDFSVLTVTCTVNA  150 (221)
T ss_pred             cccEEEEEecC-CeEEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeee-ecceEEEEecc-ccCCCCCeeEEEEecCC
Confidence            34444443333 233444899999999999993 3333333222 33332 22211111100 11233566789999999


Q ss_pred             CCCCcEEEEeCCee
Q psy15738        125 NPVPNITWTRKNNN  138 (187)
Q Consensus       125 ~p~p~~~W~~~~~~  138 (187)
                      .|.|+++|.-+...
T Consensus       151 fP~P~~~Wle~~~~  164 (221)
T PHA03376        151 FPHPHVQWLMPEGV  164 (221)
T ss_pred             cCCchheeccccCC
Confidence            99999999987654

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.44  E-value=3.8e-06  Score=50.38  Aligned_cols=35  Identities=20%  Similarity=0.346  Sum_probs=29.7

Q ss_pred             cEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        149 NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       149 ~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      .+|.|.++..+|+|.|.|.+.+..+.. ...+.|.|
T Consensus        65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~i~l~v   99 (100)
T cd05713          65 VALRIHNVRASDEGLYTCFFQSDGFYE-EATVELKV   99 (100)
T ss_pred             EEEEEEcCChhhCEEEEEEEecCCcEE-EEEEEEEE
Confidence            479999999999999999999877664 57777766

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.43  E-value=4e-06  Score=51.22  Aligned_cols=72  Identities=26%  Similarity=0.490  Sum_probs=49.9

Q ss_pred             CCcEEEEeEeccCC----------CCcEEEEeCC--eeC-----------CC----CcEEE-------eCcEEEEecCCC
Q psy15738        113 GYSVTLECKADGNP----------VPNITWTRKN--NNL-----------PG----GEYSY-------SGNSLTVRHTNR  158 (187)
Q Consensus       113 g~~~~l~C~~~g~p----------~p~~~W~~~~--~~~-----------~~----~~~~~-------~~~~l~i~~~~~  158 (187)
                      |++++|.|.....+          ...+.|++..  ...           ..    ++...       ....|.|.+++.
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~   81 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS   81 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence            78899999986543          2458899852  110           00    11111       225699999999


Q ss_pred             CCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        159 HSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       159 ~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      +|.|.|.|.+....... ...+.|.|.
T Consensus        82 sD~G~Y~C~v~~~~~~~-~~~v~l~V~  107 (110)
T cd05878          82 SDSGVYRCEVMHGIEDE-QDTVPLEVT  107 (110)
T ss_pred             hhCEEEEEEEEeCCCcc-eEEEEEEEE
Confidence            99999999999876655 578888775

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.43  E-value=4.4e-07  Score=50.64  Aligned_cols=18  Identities=22%  Similarity=0.462  Sum_probs=15.8

Q ss_pred             CCCCCCeeEEEEcCeeee
Q psy15738          2 FADSRPESTFWIFGKPIT   19 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~   19 (187)
                      .+.|.|.++|++||++|.
T Consensus         8 ~G~P~P~v~W~k~g~~l~   25 (70)
T cd05864           8 YGYPPPEVKWYKNGQLIV   25 (70)
T ss_pred             EEeCCCEEEEEECCEECC
Confidence            478999999999999875

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.41  E-value=1.5e-06  Score=52.62  Aligned_cols=65  Identities=29%  Similarity=0.476  Sum_probs=46.8

Q ss_pred             EEecCCcEEEEeEeccC-CCCcEEEEeCCee--C----------------CCCcEEE------eCcEEEEecCCCCCCeE
Q psy15738        109 EVKKGYSVTLECKADGN-PVPNITWTRKNNN--L----------------PGGEYSY------SGNSLTVRHTNRHSAGI  163 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~-p~p~~~W~~~~~~--~----------------~~~~~~~------~~~~l~i~~~~~~d~g~  163 (187)
                      .+.+|+.+.|.|...+. +...+.|++....  .                ...+...      ....|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            45789999999999876 5667999985431  0                0011111      12379999999999999


Q ss_pred             EEEEEecCCC
Q psy15738        164 YLCVANNMVG  173 (187)
Q Consensus       164 y~C~~~n~~g  173 (187)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999998664

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.40  E-value=4.3e-06  Score=50.75  Aligned_cols=67  Identities=21%  Similarity=0.407  Sum_probs=46.9

Q ss_pred             CceEEEecCCcEEEEeEeccCC-CCcEEEEeCCe--eC----------C---CCcEEE----eCcEEEEecCCCCCCeEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP-VPNITWTRKNN--NL----------P---GGEYSY----SGNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p-~p~~~W~~~~~--~~----------~---~~~~~~----~~~~l~i~~~~~~d~g~y  164 (187)
                      +....+.+|+++.|.|.+.+.. ...+.|++...  ..          .   ..+...    ....|.|.++..+|+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y   86 (106)
T cd04980           7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVY   86 (106)
T ss_pred             CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEE
Confidence            4456788999999999987665 56799997531  10          0   011111    113689999999999999


Q ss_pred             EEEEecC
Q psy15738        165 LCVANNM  171 (187)
Q Consensus       165 ~C~~~n~  171 (187)
                      .|.+.+.
T Consensus        87 ~Ca~~~~   93 (106)
T cd04980          87 YCQQYGT   93 (106)
T ss_pred             EEEEeCC
Confidence            9998754

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.39  E-value=1.3e-06  Score=51.98  Aligned_cols=31  Identities=13%  Similarity=0.085  Sum_probs=22.7

Q ss_pred             eEEEEEecccceeEEee--ccceeeEEEEEEEE
Q psy15738         64 YILAMEKEEEERKKKKK--RKKRKKKKKKKEKR   94 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~   94 (187)
                      .|..++.+|.|.|+|.+  ..+.....+.|.|.
T Consensus        61 ~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~   93 (95)
T cd05730          61 TILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF   93 (95)
T ss_pred             EECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence            37788889999999944  45556666777665

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=98.38  E-value=4.6e-06  Score=49.84  Aligned_cols=36  Identities=8%  Similarity=-0.044  Sum_probs=28.6

Q ss_pred             eeEEEEEecccceeEE--eeccceeeEEEEEEEEcCCe
Q psy15738         63 SYILAMEKEEEERKKK--KKRKKRKKKKKKKEKRIPPR   98 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c--~~~~~~~~~~~~l~v~~~p~   98 (187)
                      +.|..+..+|.|.|+|  .+..+....++.|.|..+|.
T Consensus        58 L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~   95 (98)
T cd05762          58 LTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPD   95 (98)
T ss_pred             EEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCC
Confidence            3488899999999999  55667777788888887663

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.38  E-value=5.8e-06  Score=49.33  Aligned_cols=72  Identities=26%  Similarity=0.435  Sum_probs=48.0

Q ss_pred             CCcEEEEeEeccCCC-CcEEEEeCCeeC--------C-CC---------cEEE-----eCcEEEEecCCCCCCeEEEEEE
Q psy15738        113 GYSVTLECKADGNPV-PNITWTRKNNNL--------P-GG---------EYSY-----SGNSLTVRHTNRHSAGIYLCVA  168 (187)
Q Consensus       113 g~~~~l~C~~~g~p~-p~~~W~~~~~~~--------~-~~---------~~~~-----~~~~l~i~~~~~~d~g~y~C~~  168 (187)
                      |++++|.|....... -.+.|++.....        . .+         +...     ...+|.|.++..+|.|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            678999998654332 258898743210        0 00         0011     2357999999999999999998


Q ss_pred             ec-CCCCcceeeEEEEEE
Q psy15738        169 NN-MVGSSAAASIALHVL  185 (187)
Q Consensus       169 ~n-~~g~~~s~~~~l~v~  185 (187)
                      .. +.|.. +..+.|+|.
T Consensus        81 ~~~p~g~~-~~~~~L~v~   97 (97)
T cd05846          81 NTFPDGSK-SGTMCLTVY   97 (97)
T ss_pred             EeCCCCCe-eeEEEEEEC
Confidence            85 45665 688888773

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.38  E-value=9.7e-06  Score=46.86  Aligned_cols=60  Identities=22%  Similarity=0.441  Sum_probs=41.2

Q ss_pred             EEEEeEeccC-CCCcEEEEeCCeeCCCCcEEE----------eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        116 VTLECKADGN-PVPNITWTRKNNNLPGGEYSY----------SGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       116 ~~l~C~~~g~-p~p~~~W~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +.|.|.+.|. |.+.|+|+++|..+.......          ..+.|.+......+...|.|.+.+.....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence            5789999876 888999999998775432111          11334444444556789999999986543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.35  E-value=1.7e-06  Score=50.29  Aligned_cols=29  Identities=17%  Similarity=0.172  Sum_probs=19.3

Q ss_pred             eEEEEEecccceeEEeecc---ceeeEEEEEE
Q psy15738         64 YILAMEKEEEERKKKKKRK---KRKKKKKKKE   92 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~~---~~~~~~~~l~   92 (187)
                      .|..+..+|.|.|+|.+..   ...+..+.|.
T Consensus        54 ~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~   85 (86)
T cd05724          54 LIAEARKSDEGTYKCVATNMVGERESAAARLS   85 (86)
T ss_pred             EEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence            3888999999999995543   2234444443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.34  E-value=1.1e-06  Score=49.21  Aligned_cols=18  Identities=33%  Similarity=0.385  Sum_probs=15.3

Q ss_pred             CCCCCCeeEEEEcCeeee
Q psy15738          2 FADSRPESTFWIFGKPIT   19 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~   19 (187)
                      -+.|.|++.|+++|+++.
T Consensus         8 ~g~P~p~v~W~k~g~~l~   25 (71)
T cd04976           8 KAYPPPEIQWYKNGKLIS   25 (71)
T ss_pred             EEeCCCEEEEEECCEECC
Confidence            368999999999998774

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.34  E-value=1.3e-05  Score=47.86  Aligned_cols=36  Identities=17%  Similarity=0.467  Sum_probs=31.4

Q ss_pred             cEEEEecCCCCCCeEEEEEEec-CCCCcceeeEEEEEE
Q psy15738        149 NSLTVRHTNRHSAGIYLCVANN-MVGSSAAASIALHVL  185 (187)
Q Consensus       149 ~~l~i~~~~~~d~g~y~C~~~n-~~g~~~s~~~~l~v~  185 (187)
                      .+|.|.+++.+|.|.|.|.+.+ +.|+. +..+.|.|.
T Consensus        63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~-~~~~~L~V~   99 (99)
T cd05886          63 GTISLSRLELEDEGVYICEFATFPTGNR-ESQLNLTVY   99 (99)
T ss_pred             ceEEEcCCccccCEEEEEEEEeCCCCCe-EEEEEEEEC
Confidence            6899999999999999999999 56765 688888873

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.33  E-value=1.6e-06  Score=51.19  Aligned_cols=31  Identities=10%  Similarity=0.032  Sum_probs=22.4

Q ss_pred             eeEEEEEecccceeEEeeccceeeEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKKRKKRKKKKKKKEK   93 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v   93 (187)
                      ..|..++.+|.|.|+|.+........+.+.|
T Consensus        60 L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   90 (92)
T cd05891          60 LTIKGVTSEDSGKYSINVKNKYGGETVDVTV   90 (92)
T ss_pred             EEECCCChhhCEEEEEEEEeCCCceeeEEEE
Confidence            3477888899999999776555555555554

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.33  E-value=2e-06  Score=48.84  Aligned_cols=65  Identities=12%  Similarity=-0.041  Sum_probs=39.0

Q ss_pred             CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEee-
Q psy15738          2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKK-   80 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~-   80 (187)
                      .+.|.|.+.|+++|+.+..    +        ..             .++.....+   ....|..+..+|.|.|+|.+ 
T Consensus         8 ~g~P~p~v~W~k~~~~l~~----~--------~~-------------~~~~~~~~~---~~l~I~~~~~~D~G~Y~C~a~   59 (76)
T cd05736           8 EGIPLPRLTWLKNGMDITP----K--------LS-------------KQLTLIANG---SELHISNVRYEDTGAYTCIAK   59 (76)
T ss_pred             eecCCCEEEEEECCEECCC----C--------CC-------------ccEEEeCCC---CEEEECcCCcccCEEEEEEEE
Confidence            3679999999999886631    0        00             011111111   12236778889999999944 


Q ss_pred             -ccceeeEEEEEEEE
Q psy15738         81 -RKKRKKKKKKKEKR   94 (187)
Q Consensus        81 -~~~~~~~~~~l~v~   94 (187)
                       ..+....++.|.|.
T Consensus        60 N~~G~~~~~~~l~V~   74 (76)
T cd05736          60 NEAGVDEDISSLFVE   74 (76)
T ss_pred             cCCCCcceEEEEEEE
Confidence             45555666677664

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.32  E-value=1.2e-06  Score=49.00  Aligned_cols=29  Identities=7%  Similarity=0.034  Sum_probs=19.5

Q ss_pred             EEEEEecccceeEEeec--cceeeEEEEEEE
Q psy15738         65 ILAMEKEEEERKKKKKR--KKRKKKKKKKEK   93 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v   93 (187)
                      |..+..+|.|.|+|.+.  .+..+.++.|.|
T Consensus        40 i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731          40 IDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             ECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            77888899999999554  344444455544

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.31  E-value=2.9e-06  Score=48.34  Aligned_cols=18  Identities=22%  Similarity=0.482  Sum_probs=15.3

Q ss_pred             CCCCCCeeEEEEcCeeee
Q psy15738          2 FADSRPESTFWIFGKPIT   19 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~   19 (187)
                      .+.|.|++.|+++|.++.
T Consensus         8 ~g~P~p~v~W~k~g~~l~   25 (77)
T cd05760           8 DGHPRPTYQWFRDGTPLS   25 (77)
T ss_pred             eecCCCcEEEEECCEECC
Confidence            468999999999998763

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.30  E-value=1.5e-05  Score=48.82  Aligned_cols=37  Identities=24%  Similarity=0.425  Sum_probs=32.1

Q ss_pred             CcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        148 GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       148 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      ..+|.|.+++.+|+|.|.|.+.+..... ...+.|.|.
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~-~~~v~L~V~  114 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDT-QDTVSLDVS  114 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCccc-EEEEEEEEE
Confidence            3579999999999999999999988877 588888775

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.30  E-value=7.6e-06  Score=49.91  Aligned_cols=33  Identities=6%  Similarity=-0.053  Sum_probs=24.1

Q ss_pred             EEEEE-ecccceeEE--eeccceeeEEEEEEEEcCC
Q psy15738         65 ILAME-KEEEERKKK--KKRKKRKKKKKKKEKRIPP   97 (187)
Q Consensus        65 ~~~v~-~~d~g~y~c--~~~~~~~~~~~~l~v~~~p   97 (187)
                      |..+. .+|.|.|+|  .+..+.....+.|.|..+|
T Consensus        73 I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          73 IINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             ECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence            55665 579999999  4445556778888887665

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.28  E-value=1.8e-05  Score=47.48  Aligned_cols=36  Identities=25%  Similarity=0.416  Sum_probs=30.4

Q ss_pred             CcEEEEecCCCCCCeEEEEEEec-CCCCcceeeEEEEE
Q psy15738        148 GNSLTVRHTNRHSAGIYLCVANN-MVGSSAAASIALHV  184 (187)
Q Consensus       148 ~~~l~i~~~~~~d~g~y~C~~~n-~~g~~~s~~~~l~v  184 (187)
                      ..+|.|.+++.+|.|.|.|.+.+ +.|.. ...+.|.|
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~-~~~~~L~V   99 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVITFPAGNF-EAELVLTV   99 (100)
T ss_pred             ceEEEEecCccccceEEEEEEEeCCCCCe-eeEEEEEe
Confidence            35799999999999999999998 56665 67888877

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.28  E-value=4.3e-06  Score=47.17  Aligned_cols=28  Identities=7%  Similarity=-0.043  Sum_probs=18.8

Q ss_pred             EEEEEecccceeEEeecc--ceeeEEEEEE
Q psy15738         65 ILAMEKEEEERKKKKKRK--KRKKKKKKKE   92 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~--~~~~~~~~l~   92 (187)
                      |..+..+|.|.|+|.+..  +..+.++.|+
T Consensus        44 i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   73 (74)
T cd05764          44 ILITTVKDTGSFTCIASNAAGEATATVELH   73 (74)
T ss_pred             EEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence            677888999999995554  3344444443

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.28  E-value=3.1e-06  Score=47.83  Aligned_cols=18  Identities=11%  Similarity=0.093  Sum_probs=15.2

Q ss_pred             CC-CCCCeeEEEEcCeeee
Q psy15738          2 FA-DSRPESTFWIFGKPIT   19 (187)
Q Consensus         2 ~~-~p~p~i~w~~~g~~l~   19 (187)
                      .+ .|.|++.|+++|+++.
T Consensus         8 ~g~~P~p~~~W~k~g~~l~   26 (75)
T cd05750           8 TSEYPSLRFKWFKDGKELN   26 (75)
T ss_pred             cCCCCCceEEEEcCCeecc
Confidence            35 7999999999998774

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.28  E-value=8.9e-06  Score=50.19  Aligned_cols=66  Identities=23%  Similarity=0.457  Sum_probs=47.4

Q ss_pred             CceEEEecCCcEEEEeEecc--CCCCcEEEEeCCe--eC------------------CCCcEEE------eCcEEEEecC
Q psy15738        105 AGKVEVKKGYSVTLECKADG--NPVPNITWTRKNN--NL------------------PGGEYSY------SGNSLTVRHT  156 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g--~p~p~~~W~~~~~--~~------------------~~~~~~~------~~~~l~i~~~  156 (187)
                      +....+.+|+++.|.|.+.+  .+.+.+.|++...  ..                  ...+...      ....|.|.++
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   84 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL   84 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence            44567788999999999877  5677899998521  10                  0112211      1246999999


Q ss_pred             CCCCCeEEEEEEec
Q psy15738        157 NRHSAGIYLCVANN  170 (187)
Q Consensus       157 ~~~d~g~y~C~~~n  170 (187)
                      ..+|+|.|.|.+..
T Consensus        85 ~~~Dsg~Y~C~~~~   98 (116)
T cd04982          85 EKEDSATYYCAYWE   98 (116)
T ss_pred             CHHHCEEEEEEEec
Confidence            99999999999875

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.25  E-value=3.2e-05  Score=45.85  Aligned_cols=37  Identities=22%  Similarity=0.494  Sum_probs=30.9

Q ss_pred             CcEEEEecCCCCCCeEEEEEEec-CCCCcceeeEEEEEE
Q psy15738        148 GNSLTVRHTNRHSAGIYLCVANN-MVGSSAAASIALHVL  185 (187)
Q Consensus       148 ~~~l~i~~~~~~d~g~y~C~~~n-~~g~~~s~~~~l~v~  185 (187)
                      ..+|.|.+++.+|.|.|.|.+.+ +.|+. ..+..|.|+
T Consensus        59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~-~~~~~l~~~   96 (96)
T cd05887          59 DATIMLENVGFSDIGVYICKAVTFPLGNT-QSSTTVTVL   96 (96)
T ss_pred             ccEEEEeCCCccccEEEEEEEEeCCCCCe-eEEEEEEEC
Confidence            46899999999999999999765 56777 588888874

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.24  E-value=1.1e-05  Score=48.24  Aligned_cols=63  Identities=19%  Similarity=0.352  Sum_probs=43.8

Q ss_pred             EEecCCcEEEEeEeccC--CCCcEEEEeCCe--eCC-------------CCcEEE----eCcEEEEecCCCCCCeEEEEE
Q psy15738        109 EVKKGYSVTLECKADGN--PVPNITWTRKNN--NLP-------------GGEYSY----SGNSLTVRHTNRHSAGIYLCV  167 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~--p~p~~~W~~~~~--~~~-------------~~~~~~----~~~~l~i~~~~~~d~g~y~C~  167 (187)
                      .+.+|+++.|.|...+.  ....+.||+...  ...             ..+...    ....|.|.++..+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            35789999999998765  456799997542  110             011111    123699999999999999999


Q ss_pred             EecC
Q psy15738        168 ANNM  171 (187)
Q Consensus       168 ~~n~  171 (187)
                      +.+.
T Consensus        82 ~~~~   85 (98)
T cd04984          82 VWDS   85 (98)
T ss_pred             EccC
Confidence            8754

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.24  E-value=5.9e-06  Score=49.00  Aligned_cols=64  Identities=31%  Similarity=0.474  Sum_probs=45.4

Q ss_pred             ecCCcEEEEeEeccC-CC-CcEEEEeCCeeCCCCcE--E-E--------eCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        111 KKGYSVTLECKADGN-PV-PNITWTRKNNNLPGGEY--S-Y--------SGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~~--~-~--------~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      ..|..+.|.|.+.|. |. ..++|+++|..+.....  . .        ..+.|.+......+.+.|.|.+.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            367899999999998 53 57999999987754432  1 0        1234555555456899999999987653

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.24  E-value=5.1e-06  Score=49.35  Aligned_cols=18  Identities=11%  Similarity=0.097  Sum_probs=13.2

Q ss_pred             CCCCCCeeEEEEcCeeee
Q psy15738          2 FADSRPESTFWIFGKPIT   19 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~   19 (187)
                      .++|.|+++|+++|+++.
T Consensus        24 ~g~P~p~i~W~k~g~~l~   41 (95)
T cd05722          24 EGEPPPKIEWKKDGVLLN   41 (95)
T ss_pred             ccCCCCEEEEEECCeECc
Confidence            467788888888877653

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.23  E-value=2.7e-06  Score=48.72  Aligned_cols=29  Identities=14%  Similarity=-0.072  Sum_probs=19.9

Q ss_pred             EEEEEecccceeEEeec---cceeeEEEEEEE
Q psy15738         65 ILAMEKEEEERKKKKKR---KKRKKKKKKKEK   93 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v   93 (187)
                      |..+..+|.|.|.|.+.   +...+..+.|+|
T Consensus        48 I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734          48 IKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             ECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            77888899999999554   333355555543

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.23  E-value=4.5e-06  Score=49.52  Aligned_cols=32  Identities=9%  Similarity=-0.023  Sum_probs=21.4

Q ss_pred             cceeEEEEEecccceeEEeec-cceeeEEEEEE
Q psy15738         61 YLSYILAMEKEEEERKKKKKR-KKRKKKKKKKE   92 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~~~-~~~~~~~~~l~   92 (187)
                      ....|.+|..+|.|.|+|... ....+..++|+
T Consensus        62 ~~L~I~nV~~~D~G~YtC~~~t~~~~~~~~~~~   94 (95)
T cd05882          62 LIISISNVQLSDEGEYTCSIFTMPVRTAKATVT   94 (95)
T ss_pred             EEEEECCCCcccCEEEEEEEEeeccccEEEEEE
Confidence            445588999999999999433 34444444444

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.22  E-value=5.6e-06  Score=48.66  Aligned_cols=31  Identities=6%  Similarity=-0.098  Sum_probs=23.1

Q ss_pred             eeEEEEEecccceeEEee--ccceeeEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKK--RKKRKKKKKKKEK   93 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v   93 (187)
                      ..|..++.+|+|.|+|.+  ..+....++.|.|
T Consensus        57 L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   89 (90)
T cd05858          57 LYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV   89 (90)
T ss_pred             EEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence            338899999999999954  4555666667665

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.20  E-value=3.6e-05  Score=50.53  Aligned_cols=79  Identities=19%  Similarity=0.454  Sum_probs=55.6

Q ss_pred             eEEEecCCcEEEEeEec-cCCCCcEEEEeCCeeC----------C---CCcEEE-----eCcEEEEecCCCCCCeEEEEE
Q psy15738        107 KVEVKKGYSVTLECKAD-GNPVPNITWTRKNNNL----------P---GGEYSY-----SGNSLTVRHTNRHSAGIYLCV  167 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~----------~---~~~~~~-----~~~~l~i~~~~~~d~g~y~C~  167 (187)
                      ...+.+|+++.|.|... +...+.+.|+|....+          .   ..+...     ....|.|.+++.+|.|.|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            35678999999999974 5556789999864311          0   011212     346899999999999999999


Q ss_pred             Eec-CCCCcceeeEEEEEE
Q psy15738        168 ANN-MVGSSAAASIALHVL  185 (187)
Q Consensus       168 ~~n-~~g~~~s~~~~l~v~  185 (187)
                      ..- +.|...+...-|.|.
T Consensus       104 F~tfp~G~~~~gt~CLtVt  122 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVT  122 (189)
T ss_pred             EEecCCCCCceeEEEEEEE
Confidence            885 456233677777663

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.20  E-value=5.8e-06  Score=46.92  Aligned_cols=21  Identities=14%  Similarity=-0.051  Sum_probs=16.1

Q ss_pred             eeEEEEEecccceeEEeeccc
Q psy15738         63 SYILAMEKEEEERKKKKKRKK   83 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~   83 (187)
                      +.|..+..+|.|.|+|.+...
T Consensus        46 L~I~~~~~~DsG~Y~C~a~N~   66 (76)
T cd05895          46 LQISKASLADNGEYKCMVSSK   66 (76)
T ss_pred             EEECcCCcccCEEEEEEEEeC
Confidence            347888999999999955443

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.18  E-value=2.7e-05  Score=46.43  Aligned_cols=66  Identities=21%  Similarity=0.378  Sum_probs=46.3

Q ss_pred             EEecCCcEEEEeEeccC-CCCc--EEEEeCCeeCCCCcEE-------EeCcEEEEecCCCCCCe-EEEEEEecCCCCc
Q psy15738        109 EVKKGYSVTLECKADGN-PVPN--ITWTRKNNNLPGGEYS-------YSGNSLTVRHTNRHSAG-IYLCVANNMVGSS  175 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~-p~p~--~~W~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g-~y~C~~~n~~g~~  175 (187)
                      .+.+|+.++|.|.+.|. |.+.  +.||+++..+......       ....++.+. +.++|.| .|.|.|.+.+...
T Consensus        12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~~   88 (100)
T cd05755          12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRPE   88 (100)
T ss_pred             cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCcc
Confidence            45789999999999764 6666  7999999887543221       123456654 4555655 9999999876543

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.18  E-value=2.9e-05  Score=47.28  Aligned_cols=36  Identities=19%  Similarity=0.320  Sum_probs=30.4

Q ss_pred             cEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        149 NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       149 ~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      .+|.|.+++.+|+|.|.|.+....... ...+.|.|.
T Consensus        72 asL~i~nv~~~D~G~Y~C~v~~g~~~~-~~~v~L~V~  107 (110)
T cd05902          72 ASLVLSRLRYSDSGTYRCEVVLGINDE-QDTVPLEVT  107 (110)
T ss_pred             EEEEECCCCHHHCEEEEEEEEECCccc-EEEEEEEEE
Confidence            479999999999999999999976555 578888774

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.18  E-value=7.3e-06  Score=48.36  Aligned_cols=27  Identities=11%  Similarity=0.091  Sum_probs=18.7

Q ss_pred             eEEEEEecccceeEEeeccceeeEEEE
Q psy15738         64 YILAMEKEEEERKKKKKRKKRKKKKKK   90 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~~~~~~~~~~   90 (187)
                      .|..+..+|.|.|+|.+.....+....
T Consensus        62 ~i~~~~~~D~G~Y~C~a~N~~G~~~~~   88 (92)
T cd05747          62 EISKVQMSDEGNYTVVVENSEGKQEAQ   88 (92)
T ss_pred             EECCCCcccCEeEEEEEEcCCCCEeEE
Confidence            377888999999999555444444433

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.18  E-value=5.2e-06  Score=49.21  Aligned_cols=22  Identities=14%  Similarity=0.081  Sum_probs=17.0

Q ss_pred             eeEEEEEecccceeEEeeccce
Q psy15738         63 SYILAMEKEEEERKKKKKRKKR   84 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~   84 (187)
                      +.|..+..+|+|.|+|......
T Consensus        62 L~I~~~~~~DsG~Y~C~~~N~~   83 (94)
T cd05756          62 LWFLPAALEDSGLYTCVVRNST   83 (94)
T ss_pred             EEEccCCcccCeEEEEEEcCCC
Confidence            3488999999999999655433

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.17  E-value=5.3e-06  Score=50.71  Aligned_cols=79  Identities=24%  Similarity=0.414  Sum_probs=51.2

Q ss_pred             ceEEEecCCcEEEEeEec-cCCCCcEEEEeCCe---e--CC---CC------------cEE-Ee-----CcEEEEecCCC
Q psy15738        106 GKVEVKKGYSVTLECKAD-GNPVPNITWTRKNN---N--LP---GG------------EYS-YS-----GNSLTVRHTNR  158 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~-g~p~p~~~W~~~~~---~--~~---~~------------~~~-~~-----~~~l~i~~~~~  158 (187)
                      ....+..|+++.|.|... ......+.|++...   .  +.   ..            +.. ..     ...|.|.+++.
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~   88 (114)
T PF07686_consen    9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP   88 (114)
T ss_dssp             SEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred             CeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence            346788999999999998 44456799998432   0  00   00            000 01     13699999999


Q ss_pred             CCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        159 HSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       159 ~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      +|+|.|.|.+.............|+|
T Consensus        89 ~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   89 SDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             GGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             CcCEEEEEEEEECCCCEECCcEEEEC
Confidence            99999999999872222233444443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.17  E-value=2.2e-06  Score=49.34  Aligned_cols=27  Identities=4%  Similarity=0.069  Sum_probs=18.0

Q ss_pred             EEEEEecccceeEEeeccceeeEEEEE
Q psy15738         65 ILAMEKEEEERKKKKKRKKRKKKKKKK   91 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~~~~~~~~l   91 (187)
                      |..+..+|.|.|+|.+..........+
T Consensus        52 i~~v~~~D~G~Y~C~a~N~~G~~~~~~   78 (82)
T cd05856          52 LKNLKPEDSGKYTCHVSNRAGEINATY   78 (82)
T ss_pred             EccCChhhCEEEEEEEEcCCccEEEEE
Confidence            678888999999995554333333333

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.17  E-value=1.2e-05  Score=48.01  Aligned_cols=25  Identities=8%  Similarity=0.005  Sum_probs=16.5

Q ss_pred             EecccceeEEeeccc--e-eeEEEEEEE
Q psy15738         69 EKEEEERKKKKKRKK--R-KKKKKKKEK   93 (187)
Q Consensus        69 ~~~d~g~y~c~~~~~--~-~~~~~~l~v   93 (187)
                      ..+|.|.|+|.+...  . .+..+.|.|
T Consensus        72 ~~~D~G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          72 GRSDEGVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             CcCcCEEEEEEEEccccceecceEEEEe
Confidence            678999999955432  2 455566654

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.17  E-value=8.2e-06  Score=48.37  Aligned_cols=17  Identities=6%  Similarity=-0.126  Sum_probs=11.9

Q ss_pred             EEEEE-ecccceeEEeec
Q psy15738         65 ILAME-KEEEERKKKKKR   81 (187)
Q Consensus        65 ~~~v~-~~d~g~y~c~~~   81 (187)
                      |..+. ..|.|.|+|.+.
T Consensus        62 I~~~~~~~D~G~Y~C~A~   79 (94)
T cd05850          62 INNPQKARDAGSYQCLAI   79 (94)
T ss_pred             EccCCccCcCEEEEEEEE
Confidence            54544 479999999554

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.16  E-value=5.1e-05  Score=43.82  Aligned_cols=59  Identities=19%  Similarity=0.458  Sum_probs=41.0

Q ss_pred             EEEEeEeccC-CCCcEEEEeCCeeCCCCcEE----------EeCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        116 VTLECKADGN-PVPNITWTRKNNNLPGGEYS----------YSGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       116 ~~l~C~~~g~-p~p~~~W~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      +.|.|.+.|. |...++|+++|..+......          ...+.|.+......+...|.|.+.+..-.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            5789999874 67789999999886543211          11235666554455677999999987644

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.12  E-value=1.1e-05  Score=46.21  Aligned_cols=28  Identities=7%  Similarity=-0.009  Sum_probs=19.5

Q ss_pred             EEEEEecccceeEEeeccc--eeeEEEEEE
Q psy15738         65 ILAMEKEEEERKKKKKRKK--RKKKKKKKE   92 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~--~~~~~~~l~   92 (187)
                      |..+..+|.|.|+|.+...  .....+.|.
T Consensus        51 I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765          51 IYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             EccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            8889999999999955543  344444443

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd00096 Ig Immunoglobulin domain

Probab=98.12  E-value=2.2e-05  Score=43.00  Aligned_cols=57  Identities=39%  Similarity=0.719  Sum_probs=43.5

Q ss_pred             EEEEeEeccCCCCcEEEEeCCeeCCCCcE---------EEeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        116 VTLECKADGNPVPNITWTRKNNNLPGGEY---------SYSGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~---------~~~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      +.|.|.+.+.+.+.+.|++++........         ......|.+.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            36889998867788999998876543321         1234578999999999999999998865

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.10  E-value=9.3e-06  Score=48.26  Aligned_cols=31  Identities=10%  Similarity=0.008  Sum_probs=21.1

Q ss_pred             ceeEEEEEecccceeEEee--ccceeeEEEEEE
Q psy15738         62 LSYILAMEKEEEERKKKKK--RKKRKKKKKKKE   92 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~   92 (187)
                      ...|..++.+|.|.|+|.+  ..+..+.++.|.
T Consensus        63 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~   95 (96)
T cd05732          63 SLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLE   95 (96)
T ss_pred             EEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEe
Confidence            3447888899999999944  444445555554

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.09  E-value=1.8e-05  Score=45.16  Aligned_cols=17  Identities=6%  Similarity=0.094  Sum_probs=15.7

Q ss_pred             CCCCCeeEEEEcCeeee
Q psy15738          3 ADSRPESTFWIFGKPIT   19 (187)
Q Consensus         3 ~~p~p~i~w~~~g~~l~   19 (187)
                      ++|+++|.||++|++|.
T Consensus        11 skP~a~i~W~k~~~~l~   27 (80)
T cd05885          11 SKPAATLRWYRDRKELK   27 (80)
T ss_pred             ccCCCeEEEEECCEECC
Confidence            68999999999999985

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.09  E-value=1.9e-05  Score=46.54  Aligned_cols=16  Identities=13%  Similarity=0.216  Sum_probs=13.4

Q ss_pred             CCCCeeEEEEcCeeee
Q psy15738          4 DSRPESTFWIFGKPIT   19 (187)
Q Consensus         4 ~p~p~i~w~~~g~~l~   19 (187)
                      .|.|.+.|++||+++.
T Consensus        27 ~~~p~i~Wyk~~~~i~   42 (92)
T cd05757          27 NTLPPVQWYKDCKLLE   42 (92)
T ss_pred             CCCCcEEEeECCEECC
Confidence            3788999999998774

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.09  E-value=6.8e-05  Score=43.10  Aligned_cols=62  Identities=18%  Similarity=0.364  Sum_probs=45.2

Q ss_pred             EEecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecC
Q psy15738        109 EVKKGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      .+..|++++|.|.....+.|  .+.|..-+...... ......+|.+..+...|+|.+.|.+...
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~-~~~~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI-LNQDKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee-ccCCccEEEeceeCcccCCEEEEEEEEC
Confidence            56789999999998665444  89998654321110 0123478999999999999999999744

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.04  E-value=5.8e-05  Score=45.02  Aligned_cols=65  Identities=22%  Similarity=0.261  Sum_probs=45.0

Q ss_pred             EEEecCCcEEEEeEeccC-CCCcEEEEeCCeeC--------------CCCcEEEe------CcEEEEecCCCCCCeEEEE
Q psy15738        108 VEVKKGYSVTLECKADGN-PVPNITWTRKNNNL--------------PGGEYSYS------GNSLTVRHTNRHSAGIYLC  166 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~-p~p~~~W~~~~~~~--------------~~~~~~~~------~~~l~i~~~~~~d~g~y~C  166 (187)
                      +.+.+|++++|.|..... ....+.|++.....              ..++....      ...|.|.++..+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            356789999999987653 45568899864211              01112111      1369999999999999999


Q ss_pred             EEecCC
Q psy15738        167 VANNMV  172 (187)
Q Consensus       167 ~~~n~~  172 (187)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            988754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.04  E-value=3.5e-05  Score=46.04  Aligned_cols=31  Identities=13%  Similarity=0.027  Sum_probs=22.1

Q ss_pred             eeEEEEEecccceeEEee--ccceeeEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKK--RKKRKKKKKKKEK   93 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v   93 (187)
                      +.|..++.+|.|.|+|.+  ..+....++.|+|
T Consensus        66 L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          66 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence            348899999999999944  4455555666553

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.97  E-value=4.5e-05  Score=41.49  Aligned_cols=61  Identities=23%  Similarity=0.417  Sum_probs=42.1

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEeC
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK  187 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~~  187 (187)
                      .+++.|.|.+    ...|.|++ |......    ...+|.+-.....-.|.|.|.+.+    . +....|.|.|+
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~----~~~tlnLGs~~~DPRG~Y~C~~s~----~-~~~~~LQVyYR   66 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEILEV----SNTLLDLGSRINDPRGTYSCKESE----P-NKEKTLQVYYR   66 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Ccccccc----cccEEeccCcccCCCcceEecCcc----C-CCcEEEEEEEE
Confidence            4578999965    24699999 5433222    146777777777779999998876    2 35566777764

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.95  E-value=8.1e-05  Score=45.21  Aligned_cols=62  Identities=23%  Similarity=0.462  Sum_probs=42.3

Q ss_pred             EEecCCcEEEEeEeccCC-CCcEEEEeCCee---C--------C------------CCcEEE--e----CcEEEEecCCC
Q psy15738        109 EVKKGYSVTLECKADGNP-VPNITWTRKNNN---L--------P------------GGEYSY--S----GNSLTVRHTNR  158 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p-~p~~~W~~~~~~---~--------~------------~~~~~~--~----~~~l~i~~~~~  158 (187)
                      .+.+|++++|.|...+.. ...+.||+...-   .        .            ..+...  .    ...|.|.++..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            467899999999986543 457999974321   0        0            111211  1    13599999999


Q ss_pred             CCCeEEEEEEec
Q psy15738        159 HSAGIYLCVANN  170 (187)
Q Consensus       159 ~d~g~y~C~~~n  170 (187)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999864

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=97.94  E-value=3.1e-05  Score=44.07  Aligned_cols=17  Identities=12%  Similarity=0.098  Sum_probs=15.3

Q ss_pred             CCCCCCeeEEEEcCeee
Q psy15738          2 FADSRPESTFWIFGKPI   18 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l   18 (187)
                      .++|.|+++|++||.++
T Consensus         8 ~G~P~P~i~W~k~g~~l   24 (77)
T cd05874           8 KGKPPPSFSWTRNGTHF   24 (77)
T ss_pred             cccCCCeEEEEECCeEC
Confidence            57899999999999876

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=97.94  E-value=5.7e-05  Score=44.14  Aligned_cols=30  Identities=17%  Similarity=0.228  Sum_probs=20.9

Q ss_pred             eEEEEEecccceeEEeec--cceeeEEEEEEE
Q psy15738         64 YILAMEKEEEERKKKKKR--KKRKKKKKKKEK   93 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v   93 (187)
                      .|..+..+|.|.|+|.+.  .+.....+.|.|
T Consensus        56 ~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   87 (88)
T cd05851          56 KIFNIQPEDEGTYECEAENIKGKDKHQARVYV   87 (88)
T ss_pred             EECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence            377888899999999544  444555555554

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=97.94  E-value=4.2e-05  Score=45.23  Aligned_cols=17  Identities=6%  Similarity=0.014  Sum_probs=14.0

Q ss_pred             CCCCCeeEEEEcCeeee
Q psy15738          3 ADSRPESTFWIFGKPIT   19 (187)
Q Consensus         3 ~~p~p~i~w~~~g~~l~   19 (187)
                      .++.|+++||++|+++.
T Consensus        26 ~~~~~~v~WYKd~~~l~   42 (95)
T cd05897          26 NRTDVELQWYKDSVLLD   42 (95)
T ss_pred             CCCCCcEEEccCCEECc
Confidence            56788999999998874

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.91  E-value=3.8e-05  Score=43.69  Aligned_cols=18  Identities=11%  Similarity=0.119  Sum_probs=15.7

Q ss_pred             CCCCCCeeEEEEcCeeee
Q psy15738          2 FADSRPESTFWIFGKPIT   19 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~   19 (187)
                      .++|.|+++|+++|.++.
T Consensus         8 ~G~P~P~v~W~k~g~~l~   25 (77)
T cd05733           8 KGNPPPTFSWTRNGTHFD   25 (77)
T ss_pred             cccCCCeEEEEECCeECC
Confidence            578999999999998774

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.90  E-value=9.5e-05  Score=45.58  Aligned_cols=67  Identities=25%  Similarity=0.453  Sum_probs=46.2

Q ss_pred             CceEEEecCCcEEEEeEeccC-CCCcEEEEeCCe--eC----------C---CCcEEEe------CcEEEEecCCCCCCe
Q psy15738        105 AGKVEVKKGYSVTLECKADGN-PVPNITWTRKNN--NL----------P---GGEYSYS------GNSLTVRHTNRHSAG  162 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~-p~p~~~W~~~~~--~~----------~---~~~~~~~------~~~l~i~~~~~~d~g  162 (187)
                      +....+..|+++.|.|..... ....+.|++...  .+          .   ..+....      ...|.|.++..+|+|
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg   85 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA   85 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE
Confidence            345678899999999997653 345689998421  10          0   1122111      236999999999999


Q ss_pred             EEEEEEecC
Q psy15738        163 IYLCVANNM  171 (187)
Q Consensus       163 ~y~C~~~n~  171 (187)
                      .|.|.+...
T Consensus        86 ~Y~C~~~~~   94 (116)
T cd07706          86 KYFCALSTL   94 (116)
T ss_pred             EEEEEEECC
Confidence            999999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.87  E-value=0.00013  Score=42.66  Aligned_cols=33  Identities=6%  Similarity=-0.077  Sum_probs=21.5

Q ss_pred             ccceeEEEEEecccceeEEeecccee--eEEEEEE
Q psy15738         60 HYLSYILAMEKEEEERKKKKKRKKRK--KKKKKKE   92 (187)
Q Consensus        60 ~~~~~~~~v~~~d~g~y~c~~~~~~~--~~~~~l~   92 (187)
                      .....|..+..+|.|.|+|.......  +..+.|.
T Consensus        55 ~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~   89 (90)
T PF07679_consen   55 SSSLTIKNVTREDAGTYTCVASNSSGEATASVNLT   89 (90)
T ss_dssp             EEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEE
T ss_pred             eeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence            34444788999999999995544433  4444444

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=97.85  E-value=4.9e-05  Score=45.04  Aligned_cols=19  Identities=11%  Similarity=0.011  Sum_probs=13.0

Q ss_pred             EEEEE-ecccceeEEeeccc
Q psy15738         65 ILAME-KEEEERKKKKKRKK   83 (187)
Q Consensus        65 ~~~v~-~~d~g~y~c~~~~~   83 (187)
                      |..+. .+|.|.|+|.+...
T Consensus        62 i~~~~~~~D~G~Y~C~A~N~   81 (94)
T cd05848          62 ISNPSEVKDSGRYQCLATNS   81 (94)
T ss_pred             EccCCccCcCEEEEEEEEcC
Confidence            55553 57999999965533

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=97.84  E-value=0.00018  Score=42.83  Aligned_cols=30  Identities=3%  Similarity=-0.110  Sum_probs=20.7

Q ss_pred             eeEEEEEecccceeEEeec--cceeeEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKKR--KKRKKKKKKKE   92 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~   92 (187)
                      ..|..++.+|.|.|+|.+.  .+..+.++.|+
T Consensus        65 L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   96 (97)
T cd05869          65 LTLKYIQYTDAGEYLCTASNTIGQDSQSMYLE   96 (97)
T ss_pred             EEEecCccCcCEEEEEEEecCCCCeeEEEEEE
Confidence            4477888999999999554  44444555554

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=97.83  E-value=0.00018  Score=41.40  Aligned_cols=28  Identities=4%  Similarity=-0.021  Sum_probs=18.3

Q ss_pred             EEEEEecccceeEEeecc--ceeeEEEEEE
Q psy15738         65 ILAMEKEEEERKKKKKRK--KRKKKKKKKE   92 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~--~~~~~~~~l~   92 (187)
                      |..+..+|.|.|.|....  +..+.++.|.
T Consensus        55 i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~   84 (85)
T cd05729          55 LESVVPSDSGKYTCIVENKYGSINHTYKVD   84 (85)
T ss_pred             EeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence            667888999999995543  3334444443

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.79  E-value=0.0004  Score=43.05  Aligned_cols=67  Identities=16%  Similarity=0.268  Sum_probs=44.8

Q ss_pred             CceEEEecCCcEEEEeEeccCC------CCcEEEEeCCeeC---------C-C--------CcEEE------eCcEEEEe
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP------VPNITWTRKNNNL---------P-G--------GEYSY------SGNSLTVR  154 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p------~p~~~W~~~~~~~---------~-~--------~~~~~------~~~~l~i~  154 (187)
                      |+.+.+..|+.+.|.|......      ...+.|++...--         . .        ++...      ....|.|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            4456788999999999864321      2358899853210         0 0        11111      12469999


Q ss_pred             cCCCCCCeEEEEEEecC
Q psy15738        155 HTNRHSAGIYLCVANNM  171 (187)
Q Consensus       155 ~~~~~d~g~y~C~~~n~  171 (187)
                      ++..+|+|.|.|.+...
T Consensus        86 ~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          86 DAQPEDSGKYFFRVELG  102 (119)
T ss_pred             cCChhhCeEEEEEEEcC
Confidence            99999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=97.79  E-value=9.3e-05  Score=43.72  Aligned_cols=17  Identities=12%  Similarity=-0.074  Sum_probs=11.6

Q ss_pred             EEEEE-ecccceeEEeec
Q psy15738         65 ILAME-KEEEERKKKKKR   81 (187)
Q Consensus        65 ~~~v~-~~d~g~y~c~~~   81 (187)
                      |..+. .+|.|.|+|.+.
T Consensus        61 I~~~~~~~D~G~Y~C~A~   78 (93)
T cd05849          61 INNPDKYKDAGRYVCIVS   78 (93)
T ss_pred             ECcCCcCCCCEEEEEEEE
Confidence            44553 579999999554

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=97.79  E-value=5.5e-05  Score=42.04  Aligned_cols=18  Identities=17%  Similarity=0.204  Sum_probs=15.5

Q ss_pred             CCCCCCeeEEEEcCeeee
Q psy15738          2 FADSRPESTFWIFGKPIT   19 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~   19 (187)
                      ++.|.|+|.|+++|+++.
T Consensus        11 ~G~P~P~v~W~k~g~~l~   28 (69)
T cd05739          11 VGAPMPYVKWMKGGEELT   28 (69)
T ss_pred             eecCCCEEEEEECCEECC
Confidence            578999999999998763

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>KOG3515|consensus

Probab=97.79  E-value=2.4e-05  Score=61.78  Aligned_cols=78  Identities=22%  Similarity=0.372  Sum_probs=60.1

Q ss_pred             EEecCCcEEEEeEeccCCCC-cEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        109 EVKKGYSVTLECKADGNPVP-NITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .+..|+.+.|.|.+.+.|++ .+.|++.+.............+|.+....+...+.|.|.+.|..+........+.|.+
T Consensus        18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~   96 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDY   96 (741)
T ss_pred             hhccCCcceeeeecCCCCCCcceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhcccccCceecceeecccc
Confidence            67899999999999988765 7999999876652222345678888888888889999999999776655555555544

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=97.78  E-value=9e-05  Score=42.13  Aligned_cols=18  Identities=17%  Similarity=0.065  Sum_probs=15.6

Q ss_pred             CCCCCCCeeEEEEcCeee
Q psy15738          1 MFADSRPESTFWIFGKPI   18 (187)
Q Consensus         1 ~~~~p~p~i~w~~~g~~l   18 (187)
                      +.++|.|+++|+++|+++
T Consensus         7 ~~G~P~P~v~W~k~g~~~   24 (77)
T cd05875           7 AKGNPVPTFQWTRNGKFF   24 (77)
T ss_pred             ccccCCCEEEEEECCEEc
Confidence            358899999999999876

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.77  E-value=0.00049  Score=40.62  Aligned_cols=61  Identities=18%  Similarity=0.224  Sum_probs=38.1

Q ss_pred             CCcEEEEeEeccCCCC--cEEEEeCCeeCCCCc----EEE-eCcE---EEEecCCCCCCeEEEEEEecCCC
Q psy15738        113 GYSVTLECKADGNPVP--NITWTRKNNNLPGGE----YSY-SGNS---LTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~----~~~-~~~~---l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      ++.+.|.|.+.|..++  .+.|++++.......    ... ..+.   .....+...+...|.|.+.+...
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            6789999999997444  789999996332221    111 1111   11223344578999999987644

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=97.77  E-value=4.4e-05  Score=44.18  Aligned_cols=29  Identities=10%  Similarity=0.009  Sum_probs=20.1

Q ss_pred             EEEEEecccceeEEeecc--ceeeEEEEEEE
Q psy15738         65 ILAMEKEEEERKKKKKRK--KRKKKKKKKEK   93 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~--~~~~~~~~l~v   93 (187)
                      |.+++.+|+|.|+|.+..  ...+.+..|.|
T Consensus        53 I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v   83 (84)
T cd05742          53 IPNATLKDSGTYTCAASSGTMDQKESTKVNI   83 (84)
T ss_pred             ECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence            788889999999995543  33444555544

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.75  E-value=0.00018  Score=42.02  Aligned_cols=62  Identities=27%  Similarity=0.417  Sum_probs=41.5

Q ss_pred             CCcEEEEeEe-ccCCCCcEEEEeCCeeCCCCcE----------EEeCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        113 GYSVTLECKA-DGNPVPNITWTRKNNNLPGGEY----------SYSGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       113 g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~----------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      |+.+.+.|.+ .|+|+|.+.|+.++........          ....+.|.+......+...+.|.+.+..-.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            6799999976 5678899999999976611111          111245666554445678999999987654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.75  E-value=0.00064  Score=41.53  Aligned_cols=62  Identities=18%  Similarity=0.361  Sum_probs=39.9

Q ss_pred             EecCCcEEEEeEeccCCC--CcEEEEeCCeeCCCCcEE----------EeCcEEEEecCCCCCCe-EEEEEEecCC
Q psy15738        110 VKKGYSVTLECKADGNPV--PNITWTRKNNNLPGGEYS----------YSGNSLTVRHTNRHSAG-IYLCVANNMV  172 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d~g-~y~C~~~n~~  172 (187)
                      ...|+.++|.|.+.|.-+  ..++|++||..+......          ...+.|.+.. ...|.+ .|.|.+....
T Consensus        18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence            456788999999998744  478999999886432111          0122344443 334444 5999999864

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.74  E-value=0.00023  Score=38.47  Aligned_cols=52  Identities=27%  Similarity=0.549  Sum_probs=36.9

Q ss_pred             EecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEec
Q psy15738        110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      ...|.+|+|.|+..+   ..+.|.+++..+...     ...+.+.+-. ++.|.|.|.+.+
T Consensus         4 sisGTtVtlTCP~~~---~~i~W~~n~~~~~g~-----~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           4 SISGTTVTVTCPLSG---DDIKWKKNDQVSQGS-----DEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EEeccEEEEECCCCC---CCceEEeCCccCCCC-----CceEEeeccC-CCCceEEEEeCC
Confidence            356899999997653   239999999655442     2344555555 789999999864

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.72  E-value=0.00018  Score=41.70  Aligned_cols=23  Identities=9%  Similarity=0.006  Sum_probs=16.8

Q ss_pred             EEEEEecccceeEEeeccceeeE
Q psy15738         65 ILAMEKEEEERKKKKKRKKRKKK   87 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~~~~~   87 (187)
                      |..+..+|.|.|+|.+.......
T Consensus        55 i~~~~~~D~G~Y~C~a~N~~G~~   77 (85)
T cd05728          55 ITKLSLSDSGMYQCVAENKHGTI   77 (85)
T ss_pred             EeeCCHHHCEEEEEEEECCCCeE
Confidence            77888999999999555443333

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=97.71  E-value=5.9e-05  Score=42.96  Aligned_cols=18  Identities=6%  Similarity=-0.036  Sum_probs=14.3

Q ss_pred             CCCCCCeeEEEEcCeeee
Q psy15738          2 FADSRPESTFWIFGKPIT   19 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~   19 (187)
                      .+.|.|.++|++++.++.
T Consensus        11 ~g~P~p~v~W~~~~~~~~   28 (78)
T cd05743          11 TGVPTPIINWRLNWGHVP   28 (78)
T ss_pred             EEecCCEEEEEECCeECC
Confidence            367999999999887653

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.71  E-value=0.00047  Score=38.93  Aligned_cols=57  Identities=26%  Similarity=0.479  Sum_probs=37.4

Q ss_pred             EEEEeEeccC-CC-CcEEEEeCCeeCCCCcEE-----------EeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        116 VTLECKADGN-PV-PNITWTRKNNNLPGGEYS-----------YSGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       116 ~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      +.|.|.+.|. |+ ..+.|+++|..+..+...           ...+.|.+......+...|.|.+....
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            5799999997 44 478999999864332111           112345554445556789999998754

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=97.70  E-value=9.2e-05  Score=43.07  Aligned_cols=20  Identities=15%  Similarity=0.169  Sum_probs=16.4

Q ss_pred             eEEEEEecccceeEEeeccc
Q psy15738         64 YILAMEKEEEERKKKKKRKK   83 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~~~   83 (187)
                      .|.+++.+|+|.|+|.+...
T Consensus        51 ~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873          51 LIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             EEeCCCHHHCEEEEEEEEec
Confidence            38889999999999966654

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.68  E-value=0.00023  Score=41.88  Aligned_cols=63  Identities=3%  Similarity=0.013  Sum_probs=38.0

Q ss_pred             ceEEccCCCCeeEEEeC-eEeeeccEEEeeccccccceeEEEEEecccceeEEeec---cceeeEEEEEEE
Q psy15738         27 AIMFADSRPESTFWIFG-KLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR---KKRKKKKKKKEK   93 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v   93 (187)
                      .|...+. .+...|+++ ..+...+..+...   .....|..++.+|.|.|.|.+.   +...+..+.|.|
T Consensus        24 ~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          24 TCEAEGQ-ATYIWWVNNGSLLVPPRLQLSND---NRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             EEEeCCC-CCEEEEEECCEECCCCCEEEeCC---CCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            4555555 667777644 4444444333221   1234488999999999999553   344556677766

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=97.67  E-value=0.00039  Score=40.74  Aligned_cols=30  Identities=3%  Similarity=-0.051  Sum_probs=20.4

Q ss_pred             eeEEEEEecccceeEEeec--cceeeEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKKR--KKRKKKKKKKE   92 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~   92 (187)
                      ..|..+..+|.|.|+|.+.  .+.....+.|.
T Consensus        58 L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~   89 (90)
T cd04972          58 LQLSNITSETQTTVTCTAENPVGQANVSVQVT   89 (90)
T ss_pred             EEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence            3378889999999999544  44444555554

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.67  E-value=0.00095  Score=39.61  Aligned_cols=34  Identities=24%  Similarity=0.405  Sum_probs=26.6

Q ss_pred             CcEEEEecCCCCCCeEEEEEEecC-CCCcceeeEEE
Q psy15738        148 GNSLTVRHTNRHSAGIYLCVANNM-VGSSAAASIAL  182 (187)
Q Consensus       148 ~~~l~i~~~~~~d~g~y~C~~~n~-~g~~~s~~~~l  182 (187)
                      ..+|.|.+++.+|.|.|.|..... .|.. .+.+.+
T Consensus        59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~-~~~i~~   93 (96)
T cd05889          59 DMSLSFNNATEEDVGLYCCSLVTYPQGSW-EKVIEV   93 (96)
T ss_pred             ccEEEEcCCCcccCEEEEEEEEeCCCCCe-EEEEEE
Confidence            368999999999999999999864 5655 355443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=97.64  E-value=0.00024  Score=41.44  Aligned_cols=29  Identities=14%  Similarity=0.132  Sum_probs=20.5

Q ss_pred             EEEEEecccceeEEeec--cceeeEEEEEEE
Q psy15738         65 ILAMEKEEEERKKKKKR--KKRKKKKKKKEK   93 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v   93 (187)
                      |..++.+|.|.|.|.+.  .+.....+.|.|
T Consensus        57 i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   87 (88)
T cd04968          57 IPNIQFEDEGTYECEAENIKGKDTHQGRIYV   87 (88)
T ss_pred             ECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence            77888999999999444  444455555554

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.63  E-value=0.00023  Score=42.95  Aligned_cols=61  Identities=20%  Similarity=0.428  Sum_probs=41.4

Q ss_pred             EecCCcEEEEeEeccCCCCcEEEEeCCee----C------CC-------------CcEEE----eCcEEEEecCCCCCCe
Q psy15738        110 VKKGYSVTLECKADGNPVPNITWTRKNNN----L------PG-------------GEYSY----SGNSLTVRHTNRHSAG  162 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~p~p~~~W~~~~~~----~------~~-------------~~~~~----~~~~l~i~~~~~~d~g  162 (187)
                      +..|++++|.|.........+.|++...-    .      ..             .+...    ....|.|.++..+|+|
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg   82 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG   82 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence            56799999999986554456889874421    0      00             00110    1236999999999999


Q ss_pred             EEEEEEec
Q psy15738        163 IYLCVANN  170 (187)
Q Consensus       163 ~y~C~~~n  170 (187)
                      .|.|.+.+
T Consensus        83 tY~Ca~~~   90 (104)
T cd05720          83 YYFCSVAS   90 (104)
T ss_pred             EEEEEEcc
Confidence            99998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=97.61  E-value=0.00045  Score=40.70  Aligned_cols=65  Identities=8%  Similarity=0.051  Sum_probs=36.8

Q ss_pred             ceEEccCCCCeeEEEe--CeEeee-ccEEEeeccccccceeEEEEEecccceeEEeecc---ceeeEEEEEE
Q psy15738         27 AIMFADSRPESTFWIF--GKLITS-CSYIILATSLLHYLSYILAMEKEEEERKKKKKRK---KRKKKKKKKE   92 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~--~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~---~~~~~~~~l~   92 (187)
                      .|.+.+.+ ....|+.  +..+.. .+......+.......|..++.+|.|.|+|.+..   .....++.|+
T Consensus        21 ~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~   91 (92)
T cd04977          21 LCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK   91 (92)
T ss_pred             EEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence            45554443 4677763  333332 3333333333334555889999999999995543   3445555554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=97.59  E-value=0.00052  Score=40.44  Aligned_cols=65  Identities=12%  Similarity=0.061  Sum_probs=36.5

Q ss_pred             ceEEccCCCCeeEEEe--CeEeee-ccEEEeeccccccceeEEEEEecccceeEEeec---cceeeEEEEEEE
Q psy15738         27 AIMFADSRPESTFWIF--GKLITS-CSYIILATSLLHYLSYILAMEKEEEERKKKKKR---KKRKKKKKKKEK   93 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~--~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v   93 (187)
                      .|.+.+.+. ...|++  +..+.. .++.+...+ ......|..+..+|.|.|+|.+.   +.....++.|.+
T Consensus        21 ~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~   91 (92)
T cd05866          21 TCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEG-VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI   91 (92)
T ss_pred             EEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCC-CeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence            344444444 555663  333332 344443322 12234488999999999999555   344456666665

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=97.57  E-value=0.0002  Score=42.11  Aligned_cols=18  Identities=11%  Similarity=0.030  Sum_probs=12.2

Q ss_pred             EEEEE-ecccceeEEeecc
Q psy15738         65 ILAME-KEEEERKKKKKRK   82 (187)
Q Consensus        65 ~~~v~-~~d~g~y~c~~~~   82 (187)
                      |..+. .+|.|.|+|.+..
T Consensus        62 i~~~~~~~d~G~Y~C~a~N   80 (91)
T cd04967          62 ISNPSKAKDAGRYQCLASN   80 (91)
T ss_pred             EecCCccCCCEEEEEEEEc
Confidence            44554 3789999995553

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=97.54  E-value=0.00051  Score=39.43  Aligned_cols=16  Identities=13%  Similarity=0.229  Sum_probs=14.2

Q ss_pred             CCCCeeEEEEcCeeee
Q psy15738          4 DSRPESTFWIFGKPIT   19 (187)
Q Consensus         4 ~p~p~i~w~~~g~~l~   19 (187)
                      +|.|.|+|+++|+++.
T Consensus        12 ~P~~~v~W~~~g~~l~   27 (82)
T cd05759          12 KPAAEIIWFRDGEVLD   27 (82)
T ss_pred             cCCCEEEEEECCEEcc
Confidence            6889999999999875

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.52  E-value=0.00045  Score=40.99  Aligned_cols=33  Identities=12%  Similarity=-0.109  Sum_probs=21.5

Q ss_pred             cceeEEEEEecccceeEEeec-cceeeEEEEEEE
Q psy15738         61 YLSYILAMEKEEEERKKKKKR-KKRKKKKKKKEK   93 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~~~-~~~~~~~~~l~v   93 (187)
                      ....|..++.+|+|.|+|... ....+.++.|+|
T Consensus        62 ~sL~I~~v~~~DsG~Y~C~~~t~~~~~~~~~l~v   95 (95)
T cd07701          62 LSISISDVSLSDEGQYTCSLFTMPVKTSKAYLTV   95 (95)
T ss_pred             EEEEECcCCcccCEEEEEEeEeecCccEEEEEEC
Confidence            344589999999999999333 233345555543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>KOG1480|consensus

Probab=97.50  E-value=2.3e-05  Score=61.40  Aligned_cols=84  Identities=19%  Similarity=0.413  Sum_probs=61.4

Q ss_pred             ecCCceEEEecCCcEEEEeEe-ccCCCCcEEEEeCCeeCCCCcEE--EeCcEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738        102 VSGAGKVEVKKGYSVTLECKA-DGNPVPNITWTRKNNNLPGGEYS--YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAA  178 (187)
Q Consensus       102 ~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~  178 (187)
                      ...+....+..+....+.|.. .+.|...+.|++++....+....  .....+.+..+...|.|.|+|.+.|..+...+-
T Consensus       133 ~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~  212 (909)
T KOG1480|consen  133 EQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSD  212 (909)
T ss_pred             ccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhcccccc
Confidence            344445567777888888874 67788889999999776553221  234668888899999999999999998877655


Q ss_pred             eEEEEEE
Q psy15738        179 SIALHVL  185 (187)
Q Consensus       179 ~~~l~v~  185 (187)
                      ++.+.+.
T Consensus       213 ~~~v~vy  219 (909)
T KOG1480|consen  213 PATVQVY  219 (909)
T ss_pred             ceEEEEE
Confidence            5555543

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=97.50  E-value=0.00033  Score=40.00  Aligned_cols=30  Identities=3%  Similarity=-0.197  Sum_probs=19.9

Q ss_pred             eEEEEEecccceeEEeeccceeeEEEEEEE
Q psy15738         64 YILAMEKEEEERKKKKKRKKRKKKKKKKEK   93 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v   93 (187)
                      .|..+..+|.|.|+|.+.....+....+.|
T Consensus        48 ~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v   77 (79)
T cd04973          48 QIKDAVPRDSGLYACVTSSPSGSDTTYFSV   77 (79)
T ss_pred             EECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence            377888899999999665544444444433

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=97.50  E-value=0.00034  Score=41.70  Aligned_cols=20  Identities=5%  Similarity=0.023  Sum_probs=13.9

Q ss_pred             eEEEEEecc-cceeEEeeccc
Q psy15738         64 YILAMEKEE-EERKKKKKRKK   83 (187)
Q Consensus        64 ~~~~v~~~d-~g~y~c~~~~~   83 (187)
                      .|..+..+| .|.|.|.+...
T Consensus        67 ~I~~v~~~d~~G~Y~C~A~N~   87 (98)
T cd05758          67 TISNTQESDFQTSYNCTAWNS   87 (98)
T ss_pred             EECCccccccceeEEEEEEcC
Confidence            366777745 79999955533

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=97.49  E-value=0.00031  Score=41.03  Aligned_cols=32  Identities=6%  Similarity=-0.115  Sum_probs=21.9

Q ss_pred             eeEEEEEecccceeEEeec---cceeeEEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKKR---KKRKKKKKKKEKR   94 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v~   94 (187)
                      ..|..++.+|.|.|.|.+.   ......+..|.|.
T Consensus        53 L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~   87 (89)
T cd04979          53 LLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL   87 (89)
T ss_pred             EEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence            4488899999999999554   2334455555553

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>KOG3515|consensus

Probab=97.45  E-value=0.0017  Score=51.76  Aligned_cols=138  Identities=17%  Similarity=0.217  Sum_probs=81.0

Q ss_pred             ceEEc-cCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecc-cceeEEee---ccceeeEEEEEEEEcCCeeEE
Q psy15738         27 AIMFA-DSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEE-EERKKKKK---RKKRKKKKKKKEKRIPPRIIY  101 (187)
Q Consensus        27 ~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~g~y~c~~---~~~~~~~~~~l~v~~~p~~~~  101 (187)
                      .|.+. +.+..+..|.+...--.|++.......+     ......+| .+.|.|.+   .+........+.+.++|.-. 
T Consensus        28 ~C~v~~~pp~~~~eW~h~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~-  101 (741)
T KOG3515|consen   28 PCRVNSNPPEIDVEWYHSTSGEHGRYATIADPTL-----VTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACL-  101 (741)
T ss_pred             eeecCCCCCCcceEEEecCcccccccccccCCce-----eeecchhhhhhhhhhhhcccccCceecceeeccccCcccc-
Confidence            34444 5555677777552222255433332222     23333333 46777733   34445566788888877653 


Q ss_pred             ecCCceEEEecCCcEEEEeEe--ccCCCCcEEEEeCCeeCCCCc-------------EEEeCcEEEEecCCCCCCeEEEE
Q psy15738        102 VSGAGKVEVKKGYSVTLECKA--DGNPVPNITWTRKNNNLPGGE-------------YSYSGNSLTVRHTNRHSAGIYLC  166 (187)
Q Consensus       102 ~~~~~~~~~~~g~~~~l~C~~--~g~p~p~~~W~~~~~~~~~~~-------------~~~~~~~l~i~~~~~~d~g~y~C  166 (187)
                       ..........+..+.+.|.+  .+.|.+.+.|..++.......             .....+.+.+......+.|.|+|
T Consensus       102 -~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC  180 (741)
T KOG3515|consen  102 -PELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTC  180 (741)
T ss_pred             -ccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEc
Confidence             22222345677888999965  445677899999886432110             11234567777777888999999


Q ss_pred             EEecC
Q psy15738        167 VANNM  171 (187)
Q Consensus       167 ~~~n~  171 (187)
                      .|.|.
T Consensus       181 ~A~nr  185 (741)
T KOG3515|consen  181 PANNR  185 (741)
T ss_pred             ccccc
Confidence            99995

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.36  E-value=0.0025  Score=37.74  Aligned_cols=62  Identities=11%  Similarity=0.203  Sum_probs=37.6

Q ss_pred             CcEEEEeEe-ccCCCCcEEEEeCCeeCCCCcE-------EEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        114 YSVTLECKA-DGNPVPNITWTRKNNNLPGGEY-------SYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       114 ~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ....+.|.+ .|.|.+.|.|+++.........       ....+.|.+......+...|.|.+.+..-..
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~   85 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE   85 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence            355778998 5779999999997211100000       1112355554444445669999999986443

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.35  E-value=0.0017  Score=40.07  Aligned_cols=66  Identities=24%  Similarity=0.472  Sum_probs=44.1

Q ss_pred             CceEEEecCCcEEEEeEeccCC--CCcEEEEeCCe---e--C------------C---CCcEEE--eC----cEEEEecC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP--VPNITWTRKNN---N--L------------P---GGEYSY--SG----NSLTVRHT  156 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~~---~--~------------~---~~~~~~--~~----~~l~i~~~  156 (187)
                      +....+..|+.++|.|...+.-  ...+.||+-..   +  +            .   .++...  ..    ..|.|.++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            3346788999999999875432  34688987431   1  0            0   111111  11    26899999


Q ss_pred             CCCCCeEEEEEEec
Q psy15738        157 NRHSAGIYLCVANN  170 (187)
Q Consensus       157 ~~~d~g~y~C~~~n  170 (187)
                      ..+|+|.|.|.+..
T Consensus        84 ~~~Dsa~YyCa~~~   97 (117)
T cd04981          84 TPEDTAVYYCARGL   97 (117)
T ss_pred             CHHHCEEEEEEEEc
Confidence            99999999998875

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.33  E-value=0.00068  Score=40.08  Aligned_cols=23  Identities=9%  Similarity=-0.009  Sum_probs=18.0

Q ss_pred             cceeEEEEEecccc-eeEEeeccc
Q psy15738         61 YLSYILAMEKEEEE-RKKKKKRKK   83 (187)
Q Consensus        61 ~~~~~~~v~~~d~g-~y~c~~~~~   83 (187)
                      ..+|+.+|+.+|.| .|.|.+...
T Consensus        58 GnL~fs~v~~~D~g~~Y~C~a~~~   81 (95)
T cd05845          58 GNLYFANVEEQDSHPDYICHAHFP   81 (95)
T ss_pred             ceEEEEEEehhhCCCCeEEEEEcc
Confidence            44459999999999 899966543

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.32  E-value=0.00099  Score=39.91  Aligned_cols=63  Identities=16%  Similarity=0.272  Sum_probs=40.1

Q ss_pred             ecCCcEEEEeEeccCCC--CcEEEEeCCeeCCCCcE----EEe-------CcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        111 KKGYSVTLECKADGNPV--PNITWTRKNNNLPGGEY----SYS-------GNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~----~~~-------~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      ..+..+.|.|.+.|.-+  ..+.|+++|..+..+..    ...       .+.|.+..-...+...|.|.+....-
T Consensus        15 ~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l   90 (100)
T cd07699          15 EKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL   90 (100)
T ss_pred             ccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence            35677899999998643  36899999988743311    111       12344433333346799999997643

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=97.30  E-value=0.0017  Score=38.12  Aligned_cols=32  Identities=3%  Similarity=-0.090  Sum_probs=21.3

Q ss_pred             eeEEEEEecccceeEEeec---cceeeEEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKKR---KKRKKKKKKKEKR   94 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v~   94 (187)
                      +.|..+..+|+|.|.|.+.   .......++|+|.
T Consensus        55 L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~   89 (91)
T cd05871          55 LLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVI   89 (91)
T ss_pred             EEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEe
Confidence            3388999999999999443   2223345566554

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.29  E-value=0.0014  Score=39.61  Aligned_cols=43  Identities=9%  Similarity=0.000  Sum_probs=30.1

Q ss_pred             eeeccEEEeeccccccceeEEEEEecccceeEEeecc---ceeeEEEEEE
Q psy15738         46 ITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRK---KRKKKKKKKE   92 (187)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~---~~~~~~~~l~   92 (187)
                      .|++|..+..++++.    |.+++.+|.|.|+|....   .....++.|.
T Consensus        59 ~~~gR~~~~~ngSL~----I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          59 AYSGRETIYPNGSLL----IQNVTQKDTGFYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             ccCCcEEEeCCCcEE----EecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence            456788888777666    999999999999993322   3344444443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.28  E-value=0.0011  Score=39.78  Aligned_cols=63  Identities=19%  Similarity=0.370  Sum_probs=38.6

Q ss_pred             ecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcE-----E---------EeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        111 KKGYSVTLECKADGNPVP--NITWTRKNNNLPGGEY-----S---------YSGNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~-----~---------~~~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      ..+..++|.|.+.|..++  .+.|+++|..+.....     .         ...+.|.+..-...+...|.|.+.....
T Consensus        14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l   92 (102)
T cd05768          14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL   92 (102)
T ss_pred             CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence            346789999999997554  4699999987543210     0         0112343322222345689999997543

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.27  E-value=0.0023  Score=39.29  Aligned_cols=64  Identities=19%  Similarity=0.324  Sum_probs=40.7

Q ss_pred             cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcE------------EEeCcEEEEecCCCCC-CeEEEEEEecCCCCc
Q psy15738        112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGGEY------------SYSGNSLTVRHTNRHS-AGIYLCVANNMVGSS  175 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~------------~~~~~~l~i~~~~~~d-~g~y~C~~~n~~g~~  175 (187)
                      .+..+.|.|.+.|.-++  .+.|++|+..+..+..            ....+.|.+......+ ...|.|.+.......
T Consensus        17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~   95 (115)
T cd05769          17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTD   95 (115)
T ss_pred             cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCcc
Confidence            45678999999997444  6899999987653321            0112344444333323 569999999765444

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.27  E-value=0.0036  Score=37.41  Aligned_cols=48  Identities=8%  Similarity=-0.121  Sum_probs=32.5

Q ss_pred             eeccEEEeeccccccceeEEEEEecccceeEE-ee--ccceeeEEEEEEEE
Q psy15738         47 TSCSYIILATSLLHYLSYILAMEKEEEERKKK-KK--RKKRKKKKKKKEKR   94 (187)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c-~~--~~~~~~~~~~l~v~   94 (187)
                      +..|..+......+..+.|.+++.+|.|.|.| ..  ..+..+.++.|+|+
T Consensus        49 f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V~   99 (99)
T cd05886          49 YRERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTVY   99 (99)
T ss_pred             ccCcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEEC
Confidence            44566555434455666689999999999999 22  24456677777763

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.26  E-value=0.00077  Score=39.92  Aligned_cols=22  Identities=14%  Similarity=0.036  Sum_probs=17.4

Q ss_pred             ceeEEEEEecccceeEEeeccc
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK   83 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~   83 (187)
                      .+|+.+|+.+|.|.|.|.+...
T Consensus        61 ~L~fs~v~~~D~g~Y~C~A~n~   82 (96)
T cd05727          61 NLYIAKVEASDRGNYSCFVSSP   82 (96)
T ss_pred             cEEEeecCHhhCceeEEEEEec
Confidence            4448999999999999966544

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=97.25  E-value=0.0011  Score=38.80  Aligned_cols=28  Identities=21%  Similarity=0.114  Sum_probs=20.5

Q ss_pred             eeccEEEeeccccccceeEEEEEecccceeEE
Q psy15738         47 TSCSYIILATSLLHYLSYILAMEKEEEERKKK   78 (187)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c   78 (187)
                      +..+..+..+..+.    |..++.+|+|.|+|
T Consensus        47 ~~~R~~~~~~~sL~----I~~l~~~DsG~Y~c   74 (92)
T cd05741          47 YSGRETIYPNGSLL----IQNLTKEDSGTYTL   74 (92)
T ss_pred             cCCeEEEcCCceEE----EccCCchhcEEEEE
Confidence            34555555543444    99999999999999

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.25  E-value=0.0056  Score=37.47  Aligned_cols=47  Identities=2%  Similarity=-0.189  Sum_probs=28.6

Q ss_pred             eeccEEEeec--cccccceeEEEEEecccceeEEeecccee--eEEEEEEE
Q psy15738         47 TSCSYIILAT--SLLHYLSYILAMEKEEEERKKKKKRKKRK--KKKKKKEK   93 (187)
Q Consensus        47 ~~~~~~~~~~--~~~~~~~~~~~v~~~d~g~y~c~~~~~~~--~~~~~l~v   93 (187)
                      |..|+.+...  ........|.+++.+|.|.|+|....+..  +..+.|.|
T Consensus        58 f~~R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v  108 (112)
T cd05900          58 YLDRVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQV  108 (112)
T ss_pred             ccCeEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEE
Confidence            3345555431  22345566899999999999995544433  34444444

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.24  E-value=0.0022  Score=36.78  Aligned_cols=18  Identities=11%  Similarity=0.130  Sum_probs=15.7

Q ss_pred             CCCCCeeEEEEcCeeeee
Q psy15738          3 ADSRPESTFWIFGKPITR   20 (187)
Q Consensus         3 ~~p~p~i~w~~~g~~l~~   20 (187)
                      ++|.++|.||++|+++..
T Consensus        11 SkP~A~I~W~k~~~~l~~   28 (82)
T cd05883          11 SKPAATIRWFKGNKELTG   28 (82)
T ss_pred             CCCCCEEEEEECCEECcC
Confidence            689999999999998853

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.21  E-value=0.0043  Score=36.72  Aligned_cols=62  Identities=11%  Similarity=0.164  Sum_probs=37.5

Q ss_pred             CcEEEEeEec-cCCCCcEEEEeCCeeCCCCcE-------EEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        114 YSVTLECKAD-GNPVPNITWTRKNNNLPGGEY-------SYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       114 ~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ....+.|.+. |.|.+.|+|+++.........       ....+.|.+......|...|.|.+.+..-..
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~   85 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQE   85 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence            3457889875 678999999987321110000       1112345554444445669999999986443

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=97.19  E-value=0.0006  Score=39.12  Aligned_cols=18  Identities=28%  Similarity=0.658  Sum_probs=12.8

Q ss_pred             CCCCCC-eeEEEEcCeeee
Q psy15738          2 FADSRP-ESTFWIFGKPIT   19 (187)
Q Consensus         2 ~~~p~p-~i~w~~~g~~l~   19 (187)
                      .++|.| +|+|++||+++.
T Consensus        23 ~G~P~P~~I~W~k~g~~l~   41 (81)
T cd05749          23 VGPPEPVEILWWQGGSPLG   41 (81)
T ss_pred             eeecCCeEEEEEECCEECC
Confidence            357777 688888877663

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.18  E-value=0.0047  Score=36.54  Aligned_cols=63  Identities=17%  Similarity=0.244  Sum_probs=39.4

Q ss_pred             ecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcE----EE-eCcE---EEEecCCCCCCeEEEEEEecCCC
Q psy15738        111 KKGYSVTLECKADGNPVP--NITWTRKNNNLPGGEY----SY-SGNS---LTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~----~~-~~~~---l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      ..++...|.|.+.|.-++  .+.|+++|..+.....    .. ..++   ...-.+...+...|.|.+.....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l   84 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSL   84 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCC
Confidence            357889999999997444  5799999987644311    00 1111   11112334456799999997654

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=97.17  E-value=0.0028  Score=36.62  Aligned_cols=32  Identities=9%  Similarity=-0.030  Sum_probs=22.8

Q ss_pred             eeEEEEEecccceeEEeecc----ceeeEEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKKRK----KRKKKKKKKEKR   94 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~----~~~~~~~~l~v~   94 (187)
                      +.|..++.+|+|.|.|.+..    ...+.++.|+|.
T Consensus        48 L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~   83 (84)
T cd05861          48 LTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH   83 (84)
T ss_pred             EEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence            34788889999999995542    245666777664

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.15  E-value=0.0065  Score=35.84  Aligned_cols=60  Identities=15%  Similarity=0.231  Sum_probs=38.6

Q ss_pred             cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEEE-----eCcEEE---EecCCCCCCeEEEEEEecCC
Q psy15738        112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYSY-----SGNSLT---VRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~-----~~~~l~---i~~~~~~d~g~y~C~~~n~~  172 (187)
                      .|....|.|.+.|.-++  .+.|.+||..+. +....     ..++..   ...+...+...|.|.+....
T Consensus        14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence            45667899999997554  579999998875 32211     112211   12344566778999999753

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.14  E-value=0.0062  Score=36.00  Aligned_cols=58  Identities=24%  Similarity=0.357  Sum_probs=37.7

Q ss_pred             cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEE----E-------eCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYS----Y-------SGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~----~-------~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      .++...|.|.+.|..+.  .+.|.++|..+..+...    .       ....|.+.   ..+...|.|.+....
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~   84 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG   84 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence            35567999999997444  57999999886543211    0       11234443   345669999998753

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.13  E-value=0.0035  Score=37.05  Aligned_cols=63  Identities=16%  Similarity=0.238  Sum_probs=39.4

Q ss_pred             cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEE----E-------eCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYS----Y-------SGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~----~-------~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      ..+.+.|.|.+.|.-++  .+.|+++|..+......    .       ..+.|.+..-...+...|.|.+......
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            44668999999996443  68999999876322110    0       1233444433333567999999876443

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.13  E-value=0.0033  Score=38.35  Aligned_cols=48  Identities=4%  Similarity=-0.144  Sum_probs=31.0

Q ss_pred             eeccEEEee--ccccccceeEEEEEecccceeEEeec--cceeeEEEEEEEE
Q psy15738         47 TSCSYIILA--TSLLHYLSYILAMEKEEEERKKKKKR--KKRKKKKKKKEKR   94 (187)
Q Consensus        47 ~~~~~~~~~--~~~~~~~~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~   94 (187)
                      |.+|+.+..  .......+.|.+++.+|.|.|.|...  ......++.|.|.
T Consensus        56 f~gR~~~~~~~~~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          56 YQGRVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             ccCeEEeccCCCCCCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            344555432  12233445589999999999999433  3456677777775

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PHA02633 hypothetical protein; Provisional

Probab=97.09  E-value=0.0025  Score=33.99  Aligned_cols=37  Identities=22%  Similarity=0.462  Sum_probs=29.6

Q ss_pred             CcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        148 GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       148 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      ...|.|-++..+|+|.|.|...|..--. ..++.|.|.
T Consensus        17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~-~~si~l~V~   53 (63)
T PHA02633         17 CNNMLILNPTQSDSGIYMCITKNETYSD-MMKFDLCIC   53 (63)
T ss_pred             cccEEEeccccccCcEEEEEEcCCCeeE-EEEEEEEEe
Confidence            4678999999999999999999865444 467777764

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.09  E-value=0.0057  Score=40.48  Aligned_cols=49  Identities=10%  Similarity=-0.096  Sum_probs=34.6

Q ss_pred             ccEEEeeccccccceeEEEEEecccceeEEee-c--cc-eeeEEEEEEEEcCC
Q psy15738         49 CSYIILATSLLHYLSYILAMEKEEEERKKKKK-R--KK-RKKKKKKKEKRIPP   97 (187)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~-~--~~-~~~~~~~l~v~~~p   97 (187)
                      .++.++..+.......|.+|+.+|.|.|.|.- .  .+ .++.+..|+|..+.
T Consensus        73 ~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987         73 NKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             CeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEchh
Confidence            45555454555667779999999999999922 2  23 67788888887544

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=97.08  E-value=0.0029  Score=38.19  Aligned_cols=47  Identities=11%  Similarity=-0.050  Sum_probs=28.3

Q ss_pred             eccEEEeeccccccceeEEEEEecccceeEEeec--cceeeEEEEEEEE
Q psy15738         48 SCSYIILATSLLHYLSYILAMEKEEEERKKKKKR--KKRKKKKKKKEKR   94 (187)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~   94 (187)
                      ..++.+......+..+.|..++.+|.|.|.|...  .......+.|.|.
T Consensus        55 ~~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          55 QGRVFLRRAHDLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             cCcEEecCCCCCcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEE
Confidence            3455543322334456689999999999999443  3334445555554

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.07  E-value=0.0062  Score=37.13  Aligned_cols=49  Identities=2%  Similarity=-0.122  Sum_probs=32.5

Q ss_pred             eeeccEEEeecc--ccccceeEEEEEecccceeEEee--ccceeeEEEEEEEE
Q psy15738         46 ITSCSYIILATS--LLHYLSYILAMEKEEEERKKKKK--RKKRKKKKKKKEKR   94 (187)
Q Consensus        46 ~~~~~~~~~~~~--~~~~~~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~   94 (187)
                      -|.+|..+....  .....+.|.+++.+|+|.|+|..  ........+.|.|.
T Consensus        55 ~y~gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          55 AFQGRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             hcccEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence            456677665432  23455668899999999999933  33445666677664

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.05  E-value=0.0029  Score=36.01  Aligned_cols=28  Identities=11%  Similarity=0.050  Sum_probs=22.1

Q ss_pred             EEEEEecccceeEEeeccceeeEEEEEEE
Q psy15738         65 ILAMEKEEEERKKKKKRKKRKKKKKKKEK   93 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~~~~~~~~l~v   93 (187)
                      +..+ .+|+|.|+|.+.....+..+.|+|
T Consensus        51 i~~~-~~dsG~Y~C~a~~~~~S~~v~l~V   78 (78)
T cd05752          51 IRAA-NNDSGEYRCQTQGSSLSDPVHLEV   78 (78)
T ss_pred             Eeec-ccCCEEeEEECCCCcCCCCEEEeC
Confidence            5667 889999999887777777777764

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=97.02  E-value=0.011  Score=34.86  Aligned_cols=31  Identities=13%  Similarity=-0.028  Sum_probs=20.3

Q ss_pred             ceeEEEEEecccceeEEeecc-ceeeEEEEEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRK-KRKKKKKKKE   92 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~-~~~~~~~~l~   92 (187)
                      .+.|..++.+|+|.|+|.... ...+..+.|+
T Consensus        63 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~   94 (95)
T cd05717          63 SISISNVSLSDEGRYTCSLYTMPVQTAKATVT   94 (95)
T ss_pred             EEEEccCCcccCEEEEEEEecCCCceEEEEEE
Confidence            445889999999999994332 2234444444

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>smart00406 IGv Immunoglobulin V-Type

Probab=97.00  E-value=0.0031  Score=35.76  Aligned_cols=19  Identities=32%  Similarity=0.606  Sum_probs=17.2

Q ss_pred             cEEEEecCCCCCCeEEEEE
Q psy15738        149 NSLTVRHTNRHSAGIYLCV  167 (187)
Q Consensus       149 ~~l~i~~~~~~d~g~y~C~  167 (187)
                      ..|.|.+++.+|+|.|.|.
T Consensus        62 ~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406       62 VSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             EEEEEcCCCHHHCEEEEEc
Confidence            4699999999999999995

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.00  E-value=0.0057  Score=35.16  Aligned_cols=59  Identities=29%  Similarity=0.378  Sum_probs=39.9

Q ss_pred             cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEE---E--------eCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYS---Y--------SGNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~---~--------~~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      .+..+.|.|.+.+..+.  .+.|++++..+......   .        ..+.|.+.   ..+...|.|.+.....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            37889999999987444  58899999876544321   1        11334444   4456689999987654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.00  E-value=0.005  Score=36.46  Aligned_cols=31  Identities=10%  Similarity=0.007  Sum_probs=21.9

Q ss_pred             eccEEEeeccccccceeEEEEEecccceeEE
Q psy15738         48 SCSYIILATSLLHYLSYILAMEKEEEERKKK   78 (187)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c   78 (187)
                      +.|+.....+.......|..++.+|+|.|+|
T Consensus        49 d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~C   79 (95)
T cd05881          49 DSRFQLVNFSSNELRVSLSNVSLSDEGRYFC   79 (95)
T ss_pred             CcCEEEEeCCCCEEEEEECcCCcccCEEEEE
Confidence            4555555423344556688999999999999

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.97  E-value=0.0065  Score=36.08  Aligned_cols=64  Identities=20%  Similarity=0.224  Sum_probs=38.0

Q ss_pred             EecCCcEEEEeEeccC-CCC--cEEEEeCCeeCCCC----cE------EEeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        110 VKKGYSVTLECKADGN-PVP--NITWTRKNNNLPGG----EY------SYSGNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~-p~p--~~~W~~~~~~~~~~----~~------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      +..++.++|.|.+.|. -++  .++|.+++......    ..      ....+.|.+..-...+.-.|.|.+....-
T Consensus        11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l   87 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL   87 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence            4557889999999998 444  57999987432110    00      01113344433222234589999998653

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=96.92  E-value=0.013  Score=34.83  Aligned_cols=34  Identities=6%  Similarity=-0.177  Sum_probs=23.3

Q ss_pred             ccceeEEEEEecccceeEEee--ccceeeEEEEEEE
Q psy15738         60 HYLSYILAMEKEEEERKKKKK--RKKRKKKKKKKEK   93 (187)
Q Consensus        60 ~~~~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v   93 (187)
                      .....|..++.+|+|.|+|..  ........+.|.|
T Consensus        64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          64 SVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             cEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence            345668999999999999933  3333455555554

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=96.88  E-value=0.0073  Score=36.46  Aligned_cols=36  Identities=14%  Similarity=0.034  Sum_probs=25.0

Q ss_pred             cccceeEEEEEecccceeEEeec--cceeeEEEEEEEE
Q psy15738         59 LHYLSYILAMEKEEEERKKKKKR--KKRKKKKKKKEKR   94 (187)
Q Consensus        59 ~~~~~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~   94 (187)
                      ....+.|.+++.+|.|.|+|...  .......+.|.|.
T Consensus        66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          66 GDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             CcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence            44555689999999999999333  2344566666664

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=96.87  E-value=0.0094  Score=35.38  Aligned_cols=45  Identities=16%  Similarity=-0.110  Sum_probs=28.2

Q ss_pred             ccEEEeeccccccceeEEEEEecccceeEEe---eccceeeEEEEEEE
Q psy15738         49 CSYIILATSLLHYLSYILAMEKEEEERKKKK---KRKKRKKKKKKKEK   93 (187)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~---~~~~~~~~~~~l~v   93 (187)
                      .+..+...+.....+.|.+++.+|.|.|.|.   ...+..+..+.|+|
T Consensus        49 ~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          49 RRRSITSLGLNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             CeEEEcCCCCCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence            3433333333445566899999999999992   33444555666655

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=96.80  E-value=0.0058  Score=35.06  Aligned_cols=17  Identities=6%  Similarity=0.104  Sum_probs=14.3

Q ss_pred             CCCCCeeEEEEcCeeee
Q psy15738          3 ADSRPESTFWIFGKPIT   19 (187)
Q Consensus         3 ~~p~p~i~w~~~g~~l~   19 (187)
                      ++|.++|+|+++|+++.
T Consensus        11 ~~P~~~v~W~~~~~~l~   27 (82)
T cd05761          11 SKPAATIRWFKGDKELK   27 (82)
T ss_pred             cCcCCeEEEEECCEEcc
Confidence            36889999999999875

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=96.75  E-value=0.0082  Score=35.99  Aligned_cols=31  Identities=10%  Similarity=-0.109  Sum_probs=22.1

Q ss_pred             cceeEEEEEecccceeEEeeccceeeEEEEE
Q psy15738         61 YLSYILAMEKEEEERKKKKKRKKRKKKKKKK   91 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~~~~~~~~~~~~l   91 (187)
                      ....+..+..+|.|.|+|..+....-....+
T Consensus        70 ~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i  100 (104)
T cd05896          70 DSIWFRPAELQDSGLYTCVLRNSTYCMKVSM  100 (104)
T ss_pred             CEEEEEeCChhhCeEEEEEECCCCcceEEEE
Confidence            4445899999999999997776554444443

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=96.69  E-value=0.012  Score=35.18  Aligned_cols=29  Identities=3%  Similarity=-0.106  Sum_probs=20.4

Q ss_pred             EEEEEecccceeEEeeccceeeEEEEEEE
Q psy15738         65 ILAMEKEEEERKKKKKRKKRKKKKKKKEK   93 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~~~~~~~~l~v   93 (187)
                      +.+++.+|.|.|+|.+.....+..+.+.+
T Consensus        69 L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l   97 (101)
T cd05860          69 LTRLKGTEGGTYTFLVSNSDASASVTFNV   97 (101)
T ss_pred             EeecChhhCcEEEEEEECCCCeEEEEEEE
Confidence            77888999999999665555555444443

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.68  E-value=0.047  Score=32.41  Aligned_cols=67  Identities=16%  Similarity=0.291  Sum_probs=42.4

Q ss_pred             eEEEecCCcEEE-EeEe-ccCCCCcEEEEeCCeeCCCC-------cEEEeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        107 KVEVKKGYSVTL-ECKA-DGNPVPNITWTRKNNNLPGG-------EYSYSGNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       107 ~~~~~~g~~~~l-~C~~-~g~p~p~~~W~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      ...+.+|..+.+ .|.+ .|.|++.|+|+.+..-....       ....-.+.+.+......|.-.+.|.+....-
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            355677888887 8886 67799999999763211110       0111224455554445566799999998754

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=96.68  E-value=0.019  Score=35.38  Aligned_cols=49  Identities=2%  Similarity=-0.119  Sum_probs=31.6

Q ss_pred             eeeccEEEeecc--ccccceeEEEEEecccceeEEe--eccceeeEEEEEEEE
Q psy15738         46 ITSCSYIILATS--LLHYLSYILAMEKEEEERKKKK--KRKKRKKKKKKKEKR   94 (187)
Q Consensus        46 ~~~~~~~~~~~~--~~~~~~~~~~v~~~d~g~y~c~--~~~~~~~~~~~l~v~   94 (187)
                      -|.+|..+....  .......|.+++.+|.|.|+|.  ........++.|.|.
T Consensus        62 ~y~gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          62 EYMGRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             cccCcEEeeccCCcCCceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            455666665322  2345555889999999999993  334445566666664

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=96.68  E-value=0.0055  Score=36.36  Aligned_cols=47  Identities=9%  Similarity=-0.172  Sum_probs=30.4

Q ss_pred             eeccEEEeeccccccceeEEEEEecccceeEE-eeccceeeEEEEEEE
Q psy15738         47 TSCSYIILATSLLHYLSYILAMEKEEEERKKK-KKRKKRKKKKKKKEK   93 (187)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c-~~~~~~~~~~~~l~v   93 (187)
                      |..|.........+..+.+.+|+.+|.|.|+| .......+....+.|
T Consensus        46 y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~   93 (96)
T cd05889          46 YRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV   93 (96)
T ss_pred             ccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence            44555554433455677789999999999999 444444445554444

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=96.66  E-value=0.0098  Score=34.24  Aligned_cols=17  Identities=0%  Similarity=-0.009  Sum_probs=14.4

Q ss_pred             CCCCCeeEEEEcCeeee
Q psy15738          3 ADSRPESTFWIFGKPIT   19 (187)
Q Consensus         3 ~~p~p~i~w~~~g~~l~   19 (187)
                      ++|.++|+|++||++|.
T Consensus        11 ~~P~~~ItW~k~g~~l~   27 (83)
T cd07705          11 SKPAANIKWRKGDQELE   27 (83)
T ss_pred             ccCCCEeEEEECCEECC
Confidence            46888999999998875

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=96.61  E-value=0.0069  Score=32.04  Aligned_cols=17  Identities=12%  Similarity=0.048  Sum_probs=13.4

Q ss_pred             EEEEEecccceeEEeec
Q psy15738         65 ILAMEKEEEERKKKKKR   81 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~   81 (187)
                      +..+...|.|.|+|...
T Consensus        43 i~~~~~~d~G~Y~C~~~   59 (63)
T smart00408       43 IKSVSLEDSGEYTCVAE   59 (63)
T ss_pred             EeeCCcccCEEEEEEEe
Confidence            67788889999999544

>PHA03376 BARF1; Provisional

Probab=96.60  E-value=0.017  Score=38.36  Aligned_cols=66  Identities=23%  Similarity=0.210  Sum_probs=43.9

Q ss_pred             eEEEecCCcEEEEeEecc---CCCCcEEEEeCCe----eC---CCC-----------cEEE----eCcEEEEecCCCCCC
Q psy15738        107 KVEVKKGYSVTLECKADG---NPVPNITWTRKNN----NL---PGG-----------EYSY----SGNSLTVRHTNRHSA  161 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g---~p~p~~~W~~~~~----~~---~~~-----------~~~~----~~~~l~i~~~~~~d~  161 (187)
                      ......|+.+.|.|.-.-   .+..+|.|++.+.    .+   ...           ....    .+-+|.|.++..+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            356678999999998652   2344789999532    10   000           0011    123689999999999


Q ss_pred             eEEEEEEecCC
Q psy15738        162 GIYLCVANNMV  172 (187)
Q Consensus       162 g~y~C~~~n~~  172 (187)
                      |.|.|......
T Consensus       100 GtY~C~fQkge  110 (221)
T PHA03376        100 GNYLCRMKLGE  110 (221)
T ss_pred             ceEEEEEEcCC
Confidence            99999998643

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=96.52  E-value=0.0099  Score=35.32  Aligned_cols=31  Identities=10%  Similarity=-0.022  Sum_probs=21.5

Q ss_pred             eeEEEEEecccceeEEee---ccceeeEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKK---RKKRKKKKKKKEK   93 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~---~~~~~~~~~~l~v   93 (187)
                      ..|..++.+|+|.|.|..   .+......+.|.|
T Consensus        63 L~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          63 LQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI   96 (97)
T ss_pred             EEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence            448999999999999922   2444455555555

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=96.44  E-value=0.0088  Score=35.49  Aligned_cols=47  Identities=9%  Similarity=-0.142  Sum_probs=29.1

Q ss_pred             eeccEEEeeccccccceeEEEEEecccceeEEe-ec--cceeeEEEEEEE
Q psy15738         47 TSCSYIILATSLLHYLSYILAMEKEEEERKKKK-KR--KKRKKKKKKKEK   93 (187)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~-~~--~~~~~~~~~l~v   93 (187)
                      |..|..+...+..+..+.|.+++.+|.|.|+|. ..  .+..+.+..|+|
T Consensus        46 y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          46 YQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             hCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence            344555543344456777899999999999993 33  343444444444

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.36  E-value=0.072  Score=31.61  Aligned_cols=58  Identities=16%  Similarity=0.163  Sum_probs=35.7

Q ss_pred             cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEE----------EeCcEEEEecCCCCCCeEEEEEEecC
Q psy15738        112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYS----------YSGNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      .+..+.|.|.+.|.-++  .+.|.++|..+..+...          ...+.|.+..-.  ....|.|.+...
T Consensus        15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~   84 (96)
T cd07697          15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE   84 (96)
T ss_pred             cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence            35678999999997544  57899999876433111          011233333211  234699999974

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>KOG4597|consensus

Probab=96.22  E-value=0.0087  Score=45.04  Aligned_cols=76  Identities=16%  Similarity=0.145  Sum_probs=56.6

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeC---Ce--eCCCCc-----EEEeCcEEEEecCCCCCCeEEEEEEecCCCCcce
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRK---NN--NLPGGE-----YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAA  177 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~---~~--~~~~~~-----~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s  177 (187)
                      ..+-.+++..++|.+.|.|.+.|.|.+-   ..  .+....     .......|.|-+....|+|.|.|.+.+..|... 
T Consensus       206 w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~-  284 (560)
T KOG4597|consen  206 WFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR-  284 (560)
T ss_pred             hhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceee-
Confidence            4566788999999999999999999652   21  111111     112346789999999999999999999999874 


Q ss_pred             eeEEEEE
Q psy15738        178 ASIALHV  184 (187)
Q Consensus       178 ~~~~l~v  184 (187)
                      +.+.+.+
T Consensus       285 rdv~c~s  291 (560)
T KOG4597|consen  285 RDVPCSS  291 (560)
T ss_pred             ccceeee
Confidence            7776655

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=96.22  E-value=0.012  Score=33.84  Aligned_cols=31  Identities=3%  Similarity=-0.202  Sum_probs=21.6

Q ss_pred             eeEEEEEecccceeEEeeccce---eeEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKKRKKR---KKKKKKKEK   93 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~---~~~~~~l~v   93 (187)
                      ..|..++.+|+|.|+|.+....   .+..+.|+|
T Consensus        50 l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~   83 (83)
T cd05753          50 LSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV   83 (83)
T ss_pred             EEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence            3478899999999999555433   555555554

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=96.21  E-value=0.0076  Score=34.74  Aligned_cols=23  Identities=4%  Similarity=-0.068  Sum_probs=16.7

Q ss_pred             EEEEEecccceeEEeeccceeeE
Q psy15738         65 ILAMEKEEEERKKKKKRKKRKKK   87 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~~~~~   87 (187)
                      |..++.+|.|.|.|.+.......
T Consensus        56 I~~v~~~DsG~Y~C~a~n~~g~~   78 (85)
T cd05754          56 IRNVQLSDAGTYVCTGSNMLDTD   78 (85)
T ss_pred             ECCCCHHHCEEEEEEEeccCCeE
Confidence            77888999999999655443333

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=96.11  E-value=0.028  Score=32.54  Aligned_cols=18  Identities=17%  Similarity=0.076  Sum_probs=14.7

Q ss_pred             eeEEEEEecccceeEEee
Q psy15738         63 SYILAMEKEEEERKKKKK   80 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~   80 (187)
                      ..|..+...|+|.|.|.+
T Consensus        49 LlI~~~~~~dsG~Y~C~s   66 (85)
T cd05872          49 LLILVTSPEHSGTYRCYS   66 (85)
T ss_pred             CEEEECCHhhCEEEEEEE
Confidence            348899999999999943

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.10  E-value=0.048  Score=32.33  Aligned_cols=63  Identities=19%  Similarity=0.374  Sum_probs=40.4

Q ss_pred             EecCCcEEEEeEeccC-CC--CcEEEEeCCeeCCCCcEE---------EeCcEEEEecCCCCCCe-EEEEEEecCCC
Q psy15738        110 VKKGYSVTLECKADGN-PV--PNITWTRKNNNLPGGEYS---------YSGNSLTVRHTNRHSAG-IYLCVANNMVG  173 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~-p~--p~~~W~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~g-~y~C~~~n~~g  173 (187)
                      +..|..+++.|.+.+. |.  ..+.|+++...+......         .....+++.- +++|.| .|.|.|.-.++
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~   87 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID   87 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence            4789999999999754 43  468899877554322111         0123444444 477766 99999985443

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.04  E-value=0.044  Score=32.44  Aligned_cols=60  Identities=25%  Similarity=0.393  Sum_probs=36.5

Q ss_pred             cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEE----E-------eCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYS----Y-------SGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~----~-------~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      .++.+.|.|.+.|.-+.  .+.|.++|.. ..+...    .       ....|.+..........|.|.+....
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            35678999999997543  5789999986 322110    1       11234433322223567999999754

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03270 envelope glycoprotein C; Provisional

Probab=96.02  E-value=0.2  Score=37.65  Aligned_cols=75  Identities=12%  Similarity=0.062  Sum_probs=55.3

Q ss_pred             eeEEEEEecccceeEEe--e--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCC---cEEEEeC
Q psy15738         63 SYILAMEKEEEERKKKK--K--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP---NITWTRK  135 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~--~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p---~~~W~~~  135 (187)
                      ..|..++....|.|+=.  +  ......+.+++..+.+|.+....    ..+.+|+...-.|.+..+.++   .+.|+.|
T Consensus       184 L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~----~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n  259 (466)
T PHA03270        184 LVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP----HAVLEGEPFGATCVAANYYPGDRAAFRWFEG  259 (466)
T ss_pred             EEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC----CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            44888888889999552  2  33455567888888888875333    346789999999999877544   5889999


Q ss_pred             CeeCCC
Q psy15738        136 NNNLPG  141 (187)
Q Consensus       136 ~~~~~~  141 (187)
                      +..+..
T Consensus       260 g~~V~~  265 (466)
T PHA03270        260 GDEVFA  265 (466)
T ss_pred             CccccC
Confidence            987754

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=95.98  E-value=0.02  Score=33.83  Aligned_cols=45  Identities=16%  Similarity=0.021  Sum_probs=27.7

Q ss_pred             ccEEEeeccccccceeEEEEEecccceeEEee---ccceeeEEEEEEE
Q psy15738         49 CSYIILATSLLHYLSYILAMEKEEEERKKKKK---RKKRKKKKKKKEK   93 (187)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~---~~~~~~~~~~l~v   93 (187)
                      .+..+......+....|..++.+|.|.|.|..   ..+.......|.|
T Consensus        50 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          50 GRVSFLNSSLEDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             ceEEEeCCCCCceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence            44443332223445568999999999999932   3345555555555

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=95.95  E-value=0.069  Score=29.85  Aligned_cols=57  Identities=11%  Similarity=0.131  Sum_probs=32.5

Q ss_pred             ceEEccCCCCeeEEEeC-eEeeeccEEEeeccccccceeEEEEEecccceeEEeecc---ceeeEEEEEEE
Q psy15738         27 AIMFADSRPESTFWIFG-KLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRK---KRKKKKKKKEK   93 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~---~~~~~~~~l~v   93 (187)
                      .|.+.........|..+ ..+....      +.    .++..+..+|.|.|+|....   ...+..+.|+|
T Consensus        20 ~C~~~~~p~~~~~w~~~~~~~~~~~------~~----~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   20 TCSVSGNPPPQVQWYKNGSPINSSQ------NG----LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             EEEEESSSSSEEEEEETTEEEEEES------SE----EEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEcccceeeeeeeeeeeeeeee------ee----eeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            46666555566777655 3333111      11    34667889999999995443   33445555544

...

>smart00410 IG_like Immunoglobulin like

Probab=95.91  E-value=0.13  Score=28.74  Aligned_cols=53  Identities=17%  Similarity=0.201  Sum_probs=28.2

Q ss_pred             eEEccCCCCeeEEEe--CeEee-eccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738         28 IMFADSRPESTFWIF--GKLIT-SCSYIILATSLLHYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus        28 ~~~~~~~~~~~~w~~--~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      |.+.........|+.  ++.+. ..++....... .....+..+...|.|.|.|...
T Consensus        16 C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~   71 (86)
T smart00410       16 CEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAAT   71 (86)
T ss_pred             EEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEE
Confidence            444444444555553  23332 23333333221 2344478899999999999444

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=95.91  E-value=0.13  Score=28.74  Aligned_cols=53  Identities=17%  Similarity=0.201  Sum_probs=28.2

Q ss_pred             eEEccCCCCeeEEEe--CeEee-eccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738         28 IMFADSRPESTFWIF--GKLIT-SCSYIILATSLLHYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus        28 ~~~~~~~~~~~~w~~--~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      |.+.........|+.  ++.+. ..++....... .....+..+...|.|.|.|...
T Consensus        16 C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~   71 (86)
T smart00409       16 CEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAAT   71 (86)
T ss_pred             EEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEE
Confidence            444444444555553  23332 23333333221 2344478899999999999444

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=95.87  E-value=0.035  Score=32.79  Aligned_cols=23  Identities=13%  Similarity=0.134  Sum_probs=17.7

Q ss_pred             cceeEEEEEecccceeEEeeccc
Q psy15738         61 YLSYILAMEKEEEERKKKKKRKK   83 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~~~~~   83 (187)
                      ....|..++.+|+|.|.|.....
T Consensus        65 ~~L~I~~l~~sDsgtY~C~v~~~   87 (94)
T cd07690          65 FPLIIKNLKIEDSDTYICEVEDK   87 (94)
T ss_pred             EEEEECCCCHHHCEEEEEEECCc
Confidence            34558899999999999965544

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.84  E-value=0.048  Score=32.54  Aligned_cols=64  Identities=17%  Similarity=0.246  Sum_probs=38.1

Q ss_pred             EecCCcEEEEeEeccCC-C--CcEEEEeCCeeCC--CC------cEEEeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        110 VKKGYSVTLECKADGNP-V--PNITWTRKNNNLP--GG------EYSYSGNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~p-~--p~~~W~~~~~~~~--~~------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      +..+..+.|.|.+.+.- +  ..+.|.++|..-.  ..      ......+.|.+..-.......|.|.+.....
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            33577899999999865 3  3689999986410  00      0001123454443223334579999998654

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=95.84  E-value=0.02  Score=30.78  Aligned_cols=17  Identities=12%  Similarity=-0.046  Sum_probs=13.5

Q ss_pred             eeEEEEEecccceeEEe
Q psy15738         63 SYILAMEKEEEERKKKK   79 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~   79 (187)
                      ..|..++.+|+|.|+|.
T Consensus        47 L~i~~v~~~d~G~Y~C~   63 (64)
T PF00047_consen   47 LTISNVTPEDSGTYTCV   63 (64)
T ss_dssp             EEESSCTGGGTEEEEEE
T ss_pred             EEEccCCHHHCEEEEEE
Confidence            34778888899999994

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>PHA02633 hypothetical protein; Provisional

Probab=95.79  E-value=0.033  Score=29.79  Aligned_cols=35  Identities=9%  Similarity=-0.170  Sum_probs=23.3

Q ss_pred             ccceeEEEEEecccceeEEeecccee--eEEEEEEEE
Q psy15738         60 HYLSYILAMEKEEEERKKKKKRKKRK--KKKKKKEKR   94 (187)
Q Consensus        60 ~~~~~~~~v~~~d~g~y~c~~~~~~~--~~~~~l~v~   94 (187)
                      ....+++.+..+|+|.|.|.-+...-  ..++.|+|.
T Consensus        17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~   53 (63)
T PHA02633         17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC   53 (63)
T ss_pred             cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence            34455999999999999995544433  344455554

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=95.78  E-value=0.03  Score=33.43  Aligned_cols=35  Identities=6%  Similarity=-0.138  Sum_probs=24.4

Q ss_pred             cccceeEEEEEecccceeEEe---eccceeeEEEEEEE
Q psy15738         59 LHYLSYILAMEKEEEERKKKK---KRKKRKKKKKKKEK   93 (187)
Q Consensus        59 ~~~~~~~~~v~~~d~g~y~c~---~~~~~~~~~~~l~v   93 (187)
                      .+..+.|.+++.+|.|.|.|.   ...+..+..+.|.|
T Consensus        62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            445566899999999999993   23444455556655

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>PHA03269 envelope glycoprotein C; Provisional

Probab=95.72  E-value=0.084  Score=40.18  Aligned_cols=77  Identities=17%  Similarity=0.220  Sum_probs=56.2

Q ss_pred             cceeEEEEEecccceeEEe-----eccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCC---cEEE
Q psy15738         61 YLSYILAMEKEEEERKKKK-----KRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP---NITW  132 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~-----~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p---~~~W  132 (187)
                      ...-|.+++..+.|.|+=.     +.....+..+.+.++.+|.+....    ..+.+|+...-.|.+..+.++   .+.|
T Consensus       289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p----~PVL~Ge~YkAtC~vA~YYPp~SvrlrW  364 (566)
T PHA03269        289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG----DPVLLGNPYAAYCKVNKYYPPHSVIVKW  364 (566)
T ss_pred             cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC----CccccCCCceEEEEeeeecCCCceEEEE
Confidence            4455889999999988542     223345677888888888664332    346899999999999877544   5889


Q ss_pred             EeCCeeCCC
Q psy15738        133 TRKNNNLPG  141 (187)
Q Consensus       133 ~~~~~~~~~  141 (187)
                      +.|+..+..
T Consensus       365 f~ng~~V~~  373 (566)
T PHA03269        365 TSNFGNIGK  373 (566)
T ss_pred             EeCCcccCc
Confidence            999887753

>PHA03271 envelope glycoprotein C; Provisional

Probab=95.66  E-value=0.47  Score=35.67  Aligned_cols=79  Identities=13%  Similarity=0.070  Sum_probs=53.7

Q ss_pred             cccceeEEEEEecccceeEEeecc----ceeeEEEEEEEE-cCCeeEEecCCceEEEecCCcEEEEeEeccCCCC---cE
Q psy15738         59 LHYLSYILAMEKEEEERKKKKKRK----KRKKKKKKKEKR-IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP---NI  130 (187)
Q Consensus        59 ~~~~~~~~~v~~~d~g~y~c~~~~----~~~~~~~~l~v~-~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p---~~  130 (187)
                      ...+.-|.+|+.+|.|.|+...+.    ....+.+.+.+. .+|.+....    ..+..|+...-.|.+..+.+|   .+
T Consensus       205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a----~PVL~Ge~YkAtC~vAnYYPP~Svrl  280 (490)
T PHA03271        205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA----PPVLSGENYKASCIVRHFYPPGSVYV  280 (490)
T ss_pred             ceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC----CccccCCCceEEEEeeeecCCCceEE
Confidence            445556999999999988773332    233445555554 555554332    246789999999999887554   58


Q ss_pred             EEEeCCeeCCC
Q psy15738        131 TWTRKNNNLPG  141 (187)
Q Consensus       131 ~W~~~~~~~~~  141 (187)
                      .|+.||.+...
T Consensus       281 rWf~nG~~V~~  291 (490)
T PHA03271        281 SWRQNGNIATP  291 (490)
T ss_pred             EEEeCCccccC
Confidence            89999987643

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=95.53  E-value=0.12  Score=31.68  Aligned_cols=64  Identities=13%  Similarity=0.219  Sum_probs=41.7

Q ss_pred             eEEEecCCcEEEEeEeccCCCC---cEEEEeCCeeC----------------CCCcEEE------eCcEEEEecCCCCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVP---NITWTRKNNNL----------------PGGEYSY------SGNSLTVRHTNRHSA  161 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p---~~~W~~~~~~~----------------~~~~~~~------~~~~l~i~~~~~~d~  161 (187)
                      ...+.+|.+++|.|.+.|.-..   .+.|+|...-.                ...+...      ..-.|.|.+++.+|+
T Consensus         7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT   86 (115)
T cd05721           7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT   86 (115)
T ss_pred             CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence            3567788899999998765432   47788743210                0001100      113689999999999


Q ss_pred             eEEEEEEec
Q psy15738        162 GIYLCVANN  170 (187)
Q Consensus       162 g~y~C~~~n  170 (187)
                      +.|.|..+.
T Consensus        87 a~Y~Ca~e~   95 (115)
T cd05721          87 DIYFCKIEL   95 (115)
T ss_pred             eEEEEEeee
Confidence            999997654

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.41  E-value=0.03  Score=34.99  Aligned_cols=71  Identities=18%  Similarity=0.332  Sum_probs=39.6

Q ss_pred             cCCcEEEEeEeccC-----CCCcEEEEeCCeeC----CCCcEE--------------EeCcEEEEecCCCCCCeEEEEEE
Q psy15738        112 KGYSVTLECKADGN-----PVPNITWTRKNNNL----PGGEYS--------------YSGNSLTVRHTNRHSAGIYLCVA  168 (187)
Q Consensus       112 ~g~~~~l~C~~~g~-----p~p~~~W~~~~~~~----~~~~~~--------------~~~~~l~i~~~~~~d~g~y~C~~  168 (187)
                      -.+++.++|.+...     +...+.|.+++..+    ......              ....+|.+.....- .|.|+|.+
T Consensus        26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV  104 (130)
T PF08204_consen   26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV  104 (130)
T ss_dssp             T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred             cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence            46889999998652     23358999988753    111111              01234777664433 79999999


Q ss_pred             ecCCCCcceeeEEEEE
Q psy15738        169 NNMVGSSAAASIALHV  184 (187)
Q Consensus       169 ~n~~g~~~s~~~~l~v  184 (187)
                      ....... ...+.|..
T Consensus       105 t~~~~eg-e~~i~Lk~  119 (130)
T PF08204_consen  105 TELSREG-ETTIELKY  119 (130)
T ss_dssp             EETTEEE-EEEEEEEE
T ss_pred             EecCCCc-eEEEEEEE
Confidence            8765555 35666654

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA03273 envelope glycoprotein C; Provisional

Probab=95.35  E-value=0.39  Score=36.55  Aligned_cols=103  Identities=9%  Similarity=0.050  Sum_probs=66.4

Q ss_pred             eeEEEEEecccceeEEe--ec--cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCC---cEEEEeC
Q psy15738         63 SYILAMEKEEEERKKKK--KR--KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP---NITWTRK  135 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~--~~--~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p---~~~W~~~  135 (187)
                      ..|..++..+.|.|+=.  +.  .......+.+..+.+|.+....    ..+.+|+...-.|.+..+.+|   .+.|+.|
T Consensus       200 LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~----~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d  275 (486)
T PHA03273        200 LTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV----HPSLKGENYRAVCVVASYFPHSSVKLRWYKN  275 (486)
T ss_pred             eEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC----CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            45888888999999542  22  2334466666668888765332    346899999999999877544   5889999


Q ss_pred             CeeCCCCcEEE------------eCcEEEEecCCCCC-CeEEEEEEe
Q psy15738        136 NNNLPGGEYSY------------SGNSLTVRHTNRHS-AGIYLCVAN  169 (187)
Q Consensus       136 ~~~~~~~~~~~------------~~~~l~i~~~~~~d-~g~y~C~~~  169 (187)
                      +.++....+..            ..++|.+......+ -=...|.+.
T Consensus       276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~  322 (486)
T PHA03273        276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIE  322 (486)
T ss_pred             CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEE
Confidence            99876322210            12345555543322 346788876

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=95.31  E-value=0.1  Score=32.20  Aligned_cols=20  Identities=5%  Similarity=-0.147  Sum_probs=17.2

Q ss_pred             cccceeEEEEEecccceeEE
Q psy15738         59 LHYLSYILAMEKEEEERKKK   78 (187)
Q Consensus        59 ~~~~~~~~~v~~~d~g~y~c   78 (187)
                      .+..+.|.+++.+|.|.|+|
T Consensus        78 ~daSI~I~nv~~sD~G~Y~C   97 (116)
T cd05879          78 KDGSIVIHNLDYTDNGTFTC   97 (116)
T ss_pred             CeeEEEEccCCcccCEEEEE
Confidence            44567789999999999999

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=95.25  E-value=0.061  Score=32.22  Aligned_cols=39  Identities=15%  Similarity=0.330  Sum_probs=31.9

Q ss_pred             eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        147 SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       147 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      .+-+|.|+.+...|+|.|.-.+.+..|......+++.|+
T Consensus        69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            356899999999999999999999999987777777765

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd00098 IgC Immunoglobulin Constant domain

Probab=95.23  E-value=0.078  Score=31.06  Aligned_cols=14  Identities=29%  Similarity=0.259  Sum_probs=9.7

Q ss_pred             CCeeEEEEcCeeee
Q psy15738          6 RPESTFWIFGKPIT   19 (187)
Q Consensus         6 ~p~i~w~~~g~~l~   19 (187)
                      .++|+|+++|+++.
T Consensus        29 ~~~i~W~~~g~~~~   42 (95)
T cd00098          29 DITVTWLKNGKELT   42 (95)
T ss_pred             CcEEEEEECCEECC
Confidence            35777877777664

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>PHA03042 CD47-like protein; Provisional

Probab=95.10  E-value=0.13  Score=36.14  Aligned_cols=68  Identities=19%  Similarity=0.294  Sum_probs=40.9

Q ss_pred             cCCcEEEEeEeccC-----CCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        112 KGYSVTLECKADGN-----PVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       112 ~g~~~~l~C~~~g~-----p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      -.+++.++|.+...     -.-++.|..++...-..... ...+|.+.... .-.|+|+|.|.+..-... ..+.|
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-n~aSL~~~f~~-~l~GNYTCEv~~l~n~gk-~~IeL  102 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-NTSSLKFNFSK-NLSGNYTCEAINKFNKIK-NTIEL  102 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-cceEEEEeccc-cCCCceeEEEeecccCcc-EEEEE
Confidence            46788999998653     24579999998764211111 12345554333 337999999997544332 34444

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.02  E-value=0.062  Score=37.60  Aligned_cols=47  Identities=23%  Similarity=0.413  Sum_probs=34.9

Q ss_pred             CCCcEEEEeCCe-eCCCCcE--EEeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        126 PVPNITWTRKNN-NLPGGEY--SYSGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       126 p~p~~~W~~~~~-~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      ..|.+.|...+. .+.....  ....+.|.+.+...+++|.|+|......
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence            468899987554 3433322  2356889999999999999999988643

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=94.96  E-value=0.13  Score=29.53  Aligned_cols=17  Identities=12%  Similarity=0.223  Sum_probs=14.3

Q ss_pred             CCCCCeeEEEEcCeeee
Q psy15738          3 ADSRPESTFWIFGKPIT   19 (187)
Q Consensus         3 ~~p~p~i~w~~~g~~l~   19 (187)
                      .+|+.+|+|++||+++.
T Consensus        11 f~P~~~itW~kng~~l~   27 (83)
T cd05884          11 SKPAADIRWFKNDKEIK   27 (83)
T ss_pred             ccCCCEEEEEECCEECc
Confidence            36789999999999875

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=94.77  E-value=0.051  Score=31.46  Aligned_cols=31  Identities=10%  Similarity=-0.109  Sum_probs=20.0

Q ss_pred             eEEEEEecccceeEEeecc--ceeeEEEEEEEE
Q psy15738         64 YILAMEKEEEERKKKKKRK--KRKKKKKKKEKR   94 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~~--~~~~~~~~l~v~   94 (187)
                      .|..++.+|+|.|+|.+..  ........|.|+
T Consensus        53 ~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~   85 (86)
T cd05862          53 TIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH   85 (86)
T ss_pred             EEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence            3778889999999995543  333344444443

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=94.32  E-value=0.36  Score=29.64  Aligned_cols=19  Identities=5%  Similarity=-0.015  Sum_probs=16.2

Q ss_pred             ccceeEEEEEecccceeEE
Q psy15738         60 HYLSYILAMEKEEEERKKK   78 (187)
Q Consensus        60 ~~~~~~~~v~~~d~g~y~c   78 (187)
                      ...+.|..++.+|.|.|.|
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C   96 (115)
T cd05880          78 DASILIWQLQPTDNGTYTC   96 (115)
T ss_pred             ceEEEEeeCChhhCEEEEE
Confidence            3446689999999999999

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=94.19  E-value=0.15  Score=31.17  Aligned_cols=32  Identities=13%  Similarity=-0.093  Sum_probs=20.7

Q ss_pred             ccEEEeeccc-cccceeEEEEEecccceeEEee
Q psy15738         49 CSYIILATSL-LHYLSYILAMEKEEEERKKKKK   80 (187)
Q Consensus        49 ~~~~~~~~~~-~~~~~~~~~v~~~d~g~y~c~~   80 (187)
                      .++.+..... ......|..++.+|+|.|.|..
T Consensus        64 ~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~   96 (116)
T cd04982          64 NKFEARKDVGKSTSTLTIQNLEKEDSATYYCAY   96 (116)
T ss_pred             CCEEEEEECCCCEEEEEEEECCHHHCEEEEEEE
Confidence            4554443332 2334458899999999999943

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=94.14  E-value=0.17  Score=30.65  Aligned_cols=21  Identities=14%  Similarity=-0.075  Sum_probs=16.4

Q ss_pred             ccceeEEEEEecccceeEEee
Q psy15738         60 HYLSYILAMEKEEEERKKKKK   80 (187)
Q Consensus        60 ~~~~~~~~v~~~d~g~y~c~~   80 (187)
                      .....|..++.+|+|.|.|..
T Consensus        71 ~~~L~I~~~~~~Dsg~Y~Ca~   91 (110)
T cd05899          71 RSSLTIKSAEPEDSAVYLCAS   91 (110)
T ss_pred             ccEEEECCCChhhCEEEEEEe
Confidence            344558899999999999943

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=93.87  E-value=0.59  Score=26.12  Aligned_cols=15  Identities=20%  Similarity=0.213  Sum_probs=11.6

Q ss_pred             CCCeeEEEEcCeeee
Q psy15738          5 SRPESTFWIFGKPIT   19 (187)
Q Consensus         5 p~p~i~w~~~g~~l~   19 (187)
                      +..+|+|++||+++.
T Consensus        14 ~~i~v~W~k~g~~~~   28 (75)
T smart00407       14 PDITVTWLRNGQEVT   28 (75)
T ss_pred             CCCEEEEEECCEECC
Confidence            346899999999753

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=93.80  E-value=0.5  Score=29.67  Aligned_cols=35  Identities=11%  Similarity=-0.006  Sum_probs=18.9

Q ss_pred             cccceeEEEEEeccc--ceeEEeeccc--eeeEEEEEEE
Q psy15738         59 LHYLSYILAMEKEEE--ERKKKKKRKK--RKKKKKKKEK   93 (187)
Q Consensus        59 ~~~~~~~~~v~~~d~--g~y~c~~~~~--~~~~~~~l~v   93 (187)
                      +..|...+.++..|.  |.|+|.....  ..+..+.|..
T Consensus        81 l~kG~aSL~~~~~~a~~GnYTCeVt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen   81 LLKGNASLKMDKSDAVEGNYTCEVTELSREGETTIELKY  119 (130)
T ss_dssp             GGGTB--EEEEHHHHH-EEEEEEEEETTEEEEEEEEEEE
T ss_pred             hhCCCEEEEEcchhccccceEEEEEecCCCceEEEEEEE
Confidence            445555666666664  9999955433  3334444444

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=93.61  E-value=0.17  Score=27.73  Aligned_cols=16  Identities=6%  Similarity=0.030  Sum_probs=12.7

Q ss_pred             EEEEEecccceeEEee
Q psy15738         65 ILAMEKEEEERKKKKK   80 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~   80 (187)
                      +..+..+|.|.|+|.+
T Consensus        58 i~~v~~~~~g~y~C~a   73 (75)
T PF13927_consen   58 ISNVTRSDNGTYTCIA   73 (75)
T ss_dssp             ESSCCGGGTEEEEEEE
T ss_pred             EccCCHHhCcEEEEEE
Confidence            4567789999999955

...

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=93.25  E-value=0.42  Score=27.55  Aligned_cols=16  Identities=25%  Similarity=0.613  Sum_probs=11.5

Q ss_pred             CCCCCeeEEEEcCeee
Q psy15738          3 ADSRPESTFWIFGKPI   18 (187)
Q Consensus         3 ~~p~p~i~w~~~g~~l   18 (187)
                      ++|+|+|+|+.+|.++
T Consensus        26 ~~P~~~i~W~~~~~~~   41 (89)
T PF08205_consen   26 GYPPPQITWYLDGGPV   41 (89)
T ss_dssp             EBS-EEEEEEETTCEE
T ss_pred             eECCeEEEEEECCCce
Confidence            4678888888887766

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=93.15  E-value=0.66  Score=27.65  Aligned_cols=25  Identities=4%  Similarity=-0.042  Sum_probs=15.2

Q ss_pred             EEEEEecc-cceeEEeeccceeeEEE
Q psy15738         65 ILAMEKEE-EERKKKKKRKKRKKKKK   89 (187)
Q Consensus        65 ~~~v~~~d-~g~y~c~~~~~~~~~~~   89 (187)
                      |..+...| .|.|.|.+.....+...
T Consensus        68 I~~~~~~d~~g~Y~C~a~N~~G~d~~   93 (98)
T cd05898          68 INNIMEADFQTHYNCTAWNSFGSGTA   93 (98)
T ss_pred             ECCCccccCCcEEEEEEEeCCccceE
Confidence            55665556 68999955544444333

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=92.99  E-value=0.19  Score=30.27  Aligned_cols=33  Identities=6%  Similarity=-0.211  Sum_probs=20.9

Q ss_pred             eccEEEeecc-ccccceeEEEEEecccceeEEee
Q psy15738         48 SCSYIILATS-LLHYLSYILAMEKEEEERKKKKK   80 (187)
Q Consensus        48 ~~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~   80 (187)
                      ..++.+.... .......|..++.+|+|.|.|..
T Consensus        56 ~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~   89 (109)
T cd04983          56 KGRFSATLDKSRKSSSLHISAAQLSDSAVYFCAL   89 (109)
T ss_pred             CCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEE
Confidence            3455443322 23344558899999999999943

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=92.34  E-value=0.52  Score=25.91  Aligned_cols=58  Identities=17%  Similarity=0.195  Sum_probs=30.0

Q ss_pred             ceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeeccceeeEEEEEEEEc
Q psy15738         27 AIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRKKRKKKKKKKEKRI   95 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~~   95 (187)
                      ++.+.-.....+.|++|..+..-.     +..+.    +-++.....|.|.|....  .+....|.|++
T Consensus         8 ~V~L~C~~~tsi~W~kG~~~~~~~-----~~tln----LGs~~~DPRG~Y~C~~s~--~~~~~~LQVyY   65 (69)
T cd07691           8 KVFLKCNGATNITWKKGKEILEVS-----NTLLD----LGSRINDPRGTYSCKESE--PNKEKTLQVYY   65 (69)
T ss_pred             eEEEEecCCCcEEEecCccccccc-----ccEEe----ccCcccCCCcceEecCcc--CCCcEEEEEEE
Confidence            455553324557787764433111     12222    334445567999996654  34455666653

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=91.43  E-value=1.2  Score=26.21  Aligned_cols=21  Identities=10%  Similarity=-0.019  Sum_probs=16.2

Q ss_pred             cceeEEEEEecccceeEEeec
Q psy15738         61 YLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      ....|..++.+|+|.|.|...
T Consensus        64 ~~L~I~~v~~~DsG~Y~C~~~   84 (98)
T cd05716          64 FTVTLNQLRKEDAGWYWCGVG   84 (98)
T ss_pred             EEEEEcCCCHHHCEEEEEEcc
Confidence            344478899999999999443

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=91.34  E-value=1.8  Score=25.46  Aligned_cols=14  Identities=0%  Similarity=0.012  Sum_probs=9.1

Q ss_pred             EEEEecccceeEEe
Q psy15738         66 LAMEKEEEERKKKK   79 (187)
Q Consensus        66 ~~v~~~d~g~y~c~   79 (187)
                      +.+...+...|+|.
T Consensus        65 l~~~~~~~~~ysC~   78 (93)
T cd05770          65 TEFTPTKGDEYACR   78 (93)
T ss_pred             EEECCCCCCeEEEE
Confidence            44555667788883

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=91.29  E-value=1.9  Score=25.22  Aligned_cols=61  Identities=26%  Similarity=0.499  Sum_probs=39.1

Q ss_pred             EEEecCCcEEEEeEeccC-----CCCcEEEEeCCeeCCCCcEEEeC---cEEEEecCCCCCCeEEEEEE
Q psy15738        108 VEVKKGYSVTLECKADGN-----PVPNITWTRKNNNLPGGEYSYSG---NSLTVRHTNRHSAGIYLCVA  168 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~-----p~p~~~W~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~  168 (187)
                      ..+..|..++..|.....     ....+.|..++..++..++...+   +.+++.+......-.|.|..
T Consensus        13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen   13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred             CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence            467889999999997532     34579999999888777765322   45666666555445666653

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=91.26  E-value=0.33  Score=28.87  Aligned_cols=22  Identities=9%  Similarity=0.028  Sum_probs=16.8

Q ss_pred             ccceeEEEEEecccceeEEeec
Q psy15738         60 HYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus        60 ~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      ...+.|.+++.+|.|.|.|...
T Consensus        66 ~~sL~I~~v~~~D~G~Y~C~v~   87 (105)
T cd00099          66 SFTLTISSLQPEDSAVYYCAVS   87 (105)
T ss_pred             EEEEEECCCCHHHCEEEEEEEe
Confidence            3445588999999999999433

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=91.13  E-value=1.8  Score=24.73  Aligned_cols=23  Identities=13%  Similarity=0.407  Sum_probs=18.2

Q ss_pred             eCcEEEEecCCCCCCeEEEEEEe
Q psy15738        147 SGNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus       147 ~~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      .............|+|.+.|.|.
T Consensus        41 ~~~~~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   41 TKKLVSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             ESSEEEEESBTCGGSEEEEEEEE
T ss_pred             cceEEEEecCCCCCCEEEEEEEc
Confidence            34556677788899999999994

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=91.07  E-value=0.38  Score=28.83  Aligned_cols=30  Identities=3%  Similarity=-0.024  Sum_probs=19.7

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEE
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKK   78 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c   78 (187)
                      .+..+..+. .......|.+++.+|+|.|.|
T Consensus        66 ~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C   96 (114)
T PF07686_consen   66 GRFTFSGNGSQNNFSLTIKNLQPSDSGTYFC   96 (114)
T ss_dssp             TTEEEEEETTTTEEEEEESSESGGGEEEEEE
T ss_pred             eeeeeeecccCCeEEEEECCCCcCcCEEEEE
Confidence            444444333 233445578999999999999

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=91.04  E-value=0.45  Score=29.14  Aligned_cols=18  Identities=6%  Similarity=-0.117  Sum_probs=15.7

Q ss_pred             cceeEEEEEecccceeEE
Q psy15738         61 YLSYILAMEKEEEERKKK   78 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c   78 (187)
                      ..+.|..++.+|.|.|.|
T Consensus        80 ~sL~I~~v~~~D~G~Y~C   97 (116)
T cd05715          80 ASIVIHNLQFTDNGTYTC   97 (116)
T ss_pred             eEEEEeeCCcccCEEEEE
Confidence            445689999999999999

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>PHA03270 envelope glycoprotein C; Provisional

Probab=90.86  E-value=5.9  Score=30.26  Aligned_cols=75  Identities=16%  Similarity=0.190  Sum_probs=38.2

Q ss_pred             eEEEEEEEEcCCeeEEecCCceEEEecCCcE-EEEeEeccCCCCcEEEEeCCeeCCCCcEEE-------eCcEEEEecCC
Q psy15738         86 KKKKKKEKRIPPRIIYVSGAGKVEVKKGYSV-TLECKADGNPVPNITWTRKNNNLPGGEYSY-------SGNSLTVRHTN  157 (187)
Q Consensus        86 ~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~-~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~-------~~~~l~i~~~~  157 (187)
                      +.++.-.|+.+|.+.       +.+..|+.+ ...|...   ...+.|+.++...+......       +.+...|+..-
T Consensus       317 nAa~~P~VY~~P~Is-------v~F~dG~AVCtA~CVPe---gV~l~W~V~D~~~pa~~~~v~~G~C~~~PGlvNlrS~~  386 (466)
T PHA03270        317 NATGAPTVLPRPTIE-------MEFGGDEAVCTAACVPE---GVTLAWLLGADPAPAEKAAVAGGPCPGRPGLARVRSAL  386 (466)
T ss_pred             cccccCccccCCeEE-------EEEeCCEEEEeccccCC---CCEEEEEecCCCCCCccceeecccCCCCCCceeeeccc
Confidence            445566677777664       334444433 3345443   23789998776554332211       11222333221


Q ss_pred             -C-CCCeEEEEEEec
Q psy15738        158 -R-HSAGIYLCVANN  170 (187)
Q Consensus       158 -~-~d~g~y~C~~~n  170 (187)
                       . .+...|+|.+..
T Consensus       387 plSd~~~eYTCrl~G  401 (466)
T PHA03270        387 PLSREHSEYTCRLVG  401 (466)
T ss_pred             ccccCCceEEEEEee
Confidence             1 124799999874

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=90.47  E-value=1.8  Score=25.50  Aligned_cols=14  Identities=21%  Similarity=0.107  Sum_probs=8.5

Q ss_pred             EEEEecccceeEEe
Q psy15738         66 LAMEKEEEERKKKK   79 (187)
Q Consensus        66 ~~v~~~d~g~y~c~   79 (187)
                      +.+...+...|+|.
T Consensus        66 L~v~~~~~~~ytC~   79 (94)
T cd05767          66 LNFTPEEGDIYSCI   79 (94)
T ss_pred             EEEECCCCCeEEEE
Confidence            34555566678883

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=90.17  E-value=2.4  Score=24.58  Aligned_cols=55  Identities=22%  Similarity=0.223  Sum_probs=35.7

Q ss_pred             cEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcc
Q psy15738        115 SVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSA  176 (187)
Q Consensus       115 ~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  176 (187)
                      ...+.+.+.+. .+.+.|+.||..+....   ....+..   .....|.|...+.+..|...
T Consensus        31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~---~~~~~~~---~~~~~G~h~l~vvD~~G~~~   85 (89)
T PF06832_consen   31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQ---PGHQLFW---QPDRPGEHTLTVVDAQGRSA   85 (89)
T ss_pred             cceEEEEEeCC-CCcEEEEECCEEcccCC---CCCeEEe---CCCCCeeEEEEEEcCCCCEE
Confidence            45566666665 45999999999884332   1122222   22357999999988888763

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=89.99  E-value=2  Score=25.72  Aligned_cols=65  Identities=11%  Similarity=0.128  Sum_probs=32.4

Q ss_pred             EEEcCeeeeeeeecCcceEEccCCCCe---eEEEeC-eEeeeccEEEeec-cccccceeEEEEEecccc-eeEEeec
Q psy15738         11 FWIFGKPITRIMFADLAIMFADSRPES---TFWIFG-KLITSCSYIILAT-SLLHYLSYILAMEKEEEE-RKKKKKR   81 (187)
Q Consensus        11 w~~~g~~l~~~~~~~~~~~~~~~~~~~---~~w~~~-~~~~~~~~~~~~~-~~~~~~~~~~~v~~~d~g-~y~c~~~   81 (187)
                      |..-|+.++      ++|.+.++.+..   +.|++| +.+....+..... .......+...+..+|.| .|+|.+.
T Consensus        12 ~~~eG~~~t------L~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~   82 (100)
T cd05755          12 WQPVGKNYT------LQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETE   82 (100)
T ss_pred             cccCCCcEE------EEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEE
Confidence            445555443      256666666655   377766 4443322211100 111223334566677777 8888444

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=89.51  E-value=1.9  Score=25.65  Aligned_cols=14  Identities=7%  Similarity=0.135  Sum_probs=9.0

Q ss_pred             CCeeEEEEcCeeee
Q psy15738          6 RPESTFWIFGKPIT   19 (187)
Q Consensus         6 ~p~i~w~~~g~~l~   19 (187)
                      ..+|+|++||+++.
T Consensus        33 ~i~v~W~~~g~~~~   46 (100)
T cd07699          33 FATVQWKVDGATVS   46 (100)
T ss_pred             CCEEEEEECCEECc
Confidence            45667777777654

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=89.03  E-value=5.7  Score=27.32  Aligned_cols=74  Identities=19%  Similarity=0.355  Sum_probs=37.2

Q ss_pred             EEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCC--CcEEEEeCCeeCCCCcEE-------EeCcEEEEecCC
Q psy15738         87 KKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPV--PNITWTRKNNNLPGGEYS-------YSGNSLTVRHTN  157 (187)
Q Consensus        87 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~-------~~~~~l~i~~~~  157 (187)
                      .++.-.|+.+|.+.       +.+..|.   ..|.+.=-|.  ..+.|..++.........       .+.+...|++..
T Consensus        73 a~~~P~Vy~~P~vs-------v~F~~g~---AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~  142 (211)
T PF02124_consen   73 ATATPSVYPKPRVS-------VRFEDGY---AVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRR  142 (211)
T ss_pred             cccccceecCCEEE-------EEecCCE---EEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeeccc
Confidence            34455566666654       2233333   3355433332  568899887653211111       122344455443


Q ss_pred             C--CCCe--EEEEEEec
Q psy15738        158 R--HSAG--IYLCVANN  170 (187)
Q Consensus       158 ~--~d~g--~y~C~~~n  170 (187)
                      .  ...|  +|+|.+..
T Consensus       143 pls~~~~~~~YtC~l~G  159 (211)
T PF02124_consen  143 PLSDEDGPVEYTCRLIG  159 (211)
T ss_pred             CCCccCCceeEEEEEee
Confidence            2  2235  99999874

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=88.71  E-value=2.4  Score=24.97  Aligned_cols=13  Identities=15%  Similarity=0.174  Sum_probs=8.1

Q ss_pred             CCeeEEEEcCeee
Q psy15738          6 RPESTFWIFGKPI   18 (187)
Q Consensus         6 ~p~i~w~~~g~~l   18 (187)
                      ..+|+|++||+++
T Consensus        30 ~I~vtW~~dg~~~   42 (94)
T cd05847          30 TIEVEWLVDGQVA   42 (94)
T ss_pred             CCEEEEEECCEEC
Confidence            3566677776654

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>smart00406 IGv Immunoglobulin V-Type

Probab=88.44  E-value=0.38  Score=26.89  Aligned_cols=30  Identities=10%  Similarity=-0.125  Sum_probs=20.2

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEE
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKK   78 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c   78 (187)
                      .++.+.... .......|.+++.+|+|.|.|
T Consensus        49 ~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   79 (81)
T smart00406       49 GRVTISKDTSKNDVSLTISNLRVEDTGTYYC   79 (81)
T ss_pred             CcEEEEecCcCCEEEEEEcCCCHHHCEEEEE
Confidence            445444332 333445588999999999999

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=88.15  E-value=2.5  Score=24.86  Aligned_cols=14  Identities=14%  Similarity=0.150  Sum_probs=9.0

Q ss_pred             CCeeEEEEcCeeee
Q psy15738          6 RPESTFWIFGKPIT   19 (187)
Q Consensus         6 ~p~i~w~~~g~~l~   19 (187)
                      ..+++|++||+++.
T Consensus        30 ~i~v~W~~~g~~~~   43 (94)
T cd05766          30 EITVKWFKNGQEET   43 (94)
T ss_pred             CCEEEEEECCeecC
Confidence            34667777777654

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PHA03269 envelope glycoprotein C; Provisional

Probab=85.56  E-value=16  Score=28.66  Aligned_cols=74  Identities=15%  Similarity=0.231  Sum_probs=38.6

Q ss_pred             EEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCC--CcEEEEeCCeeCCCCcEEE------eCcEEEEec---
Q psy15738         87 KKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPV--PNITWTRKNNNLPGGEYSY------SGNSLTVRH---  155 (187)
Q Consensus        87 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~------~~~~l~i~~---  155 (187)
                      .++.-.|+.+|.+.       +.+..|+.+   |.+.=-|.  ..+.|+.++..........      +.+...++.   
T Consensus       427 AaatP~VY~~PtIS-------m~FedG~AV---CtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~p  496 (566)
T PHA03269        427 AAVTPDVYPFPNVS-------IEIIDGHIV---CLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCD  496 (566)
T ss_pred             cccCCccccCCeEE-------EEEeCCEEE---EecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeeccccc
Confidence            44555667777664       334444433   44433333  3688998776543332211      223444544   


Q ss_pred             CCCCC-CeEEEEEEec
Q psy15738        156 TNRHS-AGIYLCVANN  170 (187)
Q Consensus       156 ~~~~d-~g~y~C~~~n  170 (187)
                      ++..| --.|+|.+..
T Consensus       497 LS~~dgpveYTCrL~G  512 (566)
T PHA03269        497 TSELDGPITYSCHLDG  512 (566)
T ss_pred             ccccCCceeEEEEEee
Confidence            33333 2699999874

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=85.11  E-value=1.3  Score=25.72  Aligned_cols=21  Identities=24%  Similarity=0.243  Sum_probs=16.3

Q ss_pred             cceeEEEEEecccceeEEeec
Q psy15738         61 YLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      ...++..|+.+|+|.|+|...
T Consensus        53 ~~f~i~~v~~~~~G~Y~C~~~   73 (91)
T cd05751          53 AKFFIPSMKREHAGRYRCYYR   73 (91)
T ss_pred             EEEEccCCChhHCEEEEEEEE
Confidence            334577899999999999544

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>KOG0613|consensus

Probab=84.91  E-value=2  Score=37.07  Aligned_cols=69  Identities=12%  Similarity=0.104  Sum_probs=50.2

Q ss_pred             EEEecCCcEEEEeEeccCCCCc-EEEEeCCeeCCCCc--E-----EEeCcEEEEecCCCCCCeEEEEEEecCCCCcc
Q psy15738        108 VEVKKGYSVTLECKADGNPVPN-ITWTRKNNNLPGGE--Y-----SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSA  176 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~~~~~--~-----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  176 (187)
                      .....+..+.+.|...+.+.|. +.|+.++.......  .     ......+.+..+...+.+.|.|.|.|..|...
T Consensus       344 v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~  420 (1205)
T KOG0613|consen  344 VTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQ  420 (1205)
T ss_pred             eccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCccc
Confidence            4455677889999999998876 99998775432221  0     11234577888888899999999999888764

>PHA03052 Hypothetical protein; Provisional

Probab=83.52  E-value=4.8  Score=22.05  Aligned_cols=34  Identities=18%  Similarity=0.395  Sum_probs=25.2

Q ss_pred             ceEEEecCCcEEEEeEeccC-C--CCcEEEEeCCeeC
Q psy15738        106 GKVEVKKGYSVTLECKADGN-P--VPNITWTRKNNNL  139 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~-p--~p~~~W~~~~~~~  139 (187)
                      ..+.+..|..+++.|.+.-. |  .+.+.|..|+...
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            44677889999999998433 3  3457898888765

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=82.64  E-value=9.3  Score=28.38  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=17.4

Q ss_pred             cEEEEeEeccCCCC--cEEEEeC
Q psy15738        115 SVTLECKADGNPVP--NITWTRK  135 (187)
Q Consensus       115 ~~~l~C~~~g~p~p--~~~W~~~  135 (187)
                      .+.|.|.|.|..|.  .+.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999998655  4789999

>PHA03271 envelope glycoprotein C; Provisional

Probab=82.25  E-value=20  Score=27.46  Aligned_cols=75  Identities=19%  Similarity=0.330  Sum_probs=38.5

Q ss_pred             eEEEEEEEEcCCeeEEecCCceEEEecCCcE-EEEeEeccCCCCcEEEEeCCeeCCCCcE-------E-EeCcEEEEec-
Q psy15738         86 KKKKKKEKRIPPRIIYVSGAGKVEVKKGYSV-TLECKADGNPVPNITWTRKNNNLPGGEY-------S-YSGNSLTVRH-  155 (187)
Q Consensus        86 ~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~-~l~C~~~g~p~p~~~W~~~~~~~~~~~~-------~-~~~~~l~i~~-  155 (187)
                      +.++.-.|+.+|.+.       +.+..|+.+ ...|...   ...+.|+.++.+.+....       . ...+...|+. 
T Consensus       343 nAaatP~VY~~P~IS-------v~FedG~AVCtA~CVP~---gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~  412 (490)
T PHA03271        343 NATAIPTVYHHPRIS-------LAFKDGYAICTIECVPS---GITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISR  412 (490)
T ss_pred             ecccCCccccCCeEE-------EEEeCCEEEEeccccCC---CcEEEEEecCCCCCCcccccccccccCCCCCceeeecc
Confidence            344555666667664       334445433 3345443   247899887765432211       0 1223344444 


Q ss_pred             CCCCC---CeEEEEEEec
Q psy15738        156 TNRHS---AGIYLCVANN  170 (187)
Q Consensus       156 ~~~~d---~g~y~C~~~n  170 (187)
                      ...+|   --.|+|.+..
T Consensus       413 lPlSd~dgpveYTCrL~G  430 (490)
T PHA03271        413 IPVQDNWQKTKYTCRLIG  430 (490)
T ss_pred             CCchhcCCceeEEEEEee
Confidence            33333   2699999874

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=81.69  E-value=8.6  Score=22.78  Aligned_cols=67  Identities=13%  Similarity=0.268  Sum_probs=38.7

Q ss_pred             EEEEeE-eccCCCCcEEEEeC--Cee-C---C-CCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        116 VTLECK-ADGNPVPNITWTRK--NNN-L---P-GGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       116 ~~l~C~-~~g~p~p~~~W~~~--~~~-~---~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      +.-.|. +.|.|+..|.|.-+  |.. .   . ......-.+.+.+......|.-...|.+.....+. ..++.|.
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~-~~~~~L~   97 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRF-TDSVTLN   97 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccc-cccEEec
Confidence            455798 68889999999743  221 0   0 00000112334444555667779999999875555 3555554

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	187
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		1e-08
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		2e-08
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		3e-07
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		3e-07
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-07
3s97_C	201	Ptprz Cntn1 Complex Length = 201		5e-07
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		9e-07
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		2e-06
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		2e-06
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		3e-06
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		3e-06
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		9e-06
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		3e-05
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		3e-05
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		3e-05
3kld_A	384	Ptprg Cntn4 Complex Length = 384		3e-05
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		4e-05
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		4e-05
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		6e-05
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		6e-05
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		7e-05
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		1e-04
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		1e-04
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		1e-04
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		1e-04
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		1e-04
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		4e-04
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-04
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		5e-04
1gl4_B	98	Nidogen-1 G2PERLECAN IG3 COMPLEX Length = 98		5e-04
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		7e-04
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		7e-04

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 95  IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-------YSYS 147
           +PP +             G SVTL C ADG P P ++WT+    +   E       +S  
Sbjct: 193 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 252
Query: 148 GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK 187
            + LT+R+ +++    Y+C+A N  G    ASI L V  K
Sbjct: 253 SSELTIRNVDKNDEAEYVCIAENKAGEQ-DASIHLKVFAK 291

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 95  IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTR------KNNNLPGGEYSYSG 148
           +PP +               SVTL C ADG P P +TWT+      + +N     ++Y G
Sbjct: 10  VPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDG 69
Query: 149 NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK 187
           + L ++  ++     Y+C+A N  G    A+I L V  K
Sbjct: 70  SELIIKKVDKSDEAEYICIAENKAGEQ-DATIHLKVFAK 107

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 97  PRIIYVSGAGKVE-VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRH 155
           P  +Y  G    + V +G  + LEC A G P P+I W +K  +LP  +  +   +  +R 
Sbjct: 220 PSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRI 279
Query: 156 TN--RHSAGIYLCVANNMVGS 174
           TN     +G Y C+A+N +GS
Sbjct: 280 TNVSEEDSGEYFCLASNKMGS 300

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 100 IYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NLPGGEYSYSGNSLTVRHTN 157
           +   G G   ++ G++V + CKA GNP PNI W +     ++    YS     L + ++ 
Sbjct: 114 VITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSR 173
Query: 158 RHSAGIYLCVANNMVGSSAAASIALHVLCK 187
               G Y CVA N +G+  + +  L+V  +
Sbjct: 174 EEDQGKYECVAENSMGTEHSKATNLYVKVR 203

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 100 IYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NLPGGEYSYSGNSLTVRHTN 157
           +   G G   ++ G++V + CKA GNP PNI W +     ++    YS     L + ++ 
Sbjct: 112 VITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSR 171
Query: 158 RHSAGIYLCVANNMVGSSAAASIALHVLCK 187
               G Y CVA N +G+  + +  L+V  +
Sbjct: 172 EEDQGKYECVAENSMGTEHSKATNLYVKVR 201

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLPG-GEYSYSGNSLTVRHTNRHSAGIYLCVANNM 171
           G +VTLEC A GNPVP+I W +    +P   E S SG  L + +      GIY C A N+
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENI 187
Query: 172 VGSS 175
            G  
Sbjct: 188 RGKD 191

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 95  IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY---SYSGN-- 149
           +PPR  ++         +G    +ECKADG P P +TW +   + P GEY     S N  
Sbjct: 713 VPPR--WILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTP-GEYKDLKKSDNIR 769
Query: 150 ----SLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184
               +L V +  + + G YLC A N +GS  +A I + V
Sbjct: 770 VEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISV 808

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 22/105 (20%)
Query: 96  PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITW--------TRKNNN------LPG 141
           PPRI  V     + V KG   TL CKA+G P P I W        T K++       LP 
Sbjct: 9   PPRI--VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 142 GEYSYSGNSLTVRH--TNRHSAGIYLCVANNMVGSSAAASIALHV 184
           G   +    L + H   +R   G+Y+CVA N +G + +   +L V
Sbjct: 67  GSLFF----LRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 22/105 (20%)
Query: 96  PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITW--------TRKNNN------LPG 141
           PPRI  V     + V KG   TL CKA+G P P I W        T K++       LP 
Sbjct: 9   PPRI--VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 142 GEYSYSGNSLTVRH--TNRHSAGIYLCVANNMVGSSAAASIALHV 184
           G   +    L + H   +R   G+Y+CVA N +G + +   +L V
Sbjct: 67  GSLFF----LRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 96  PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNL---PGGEYSYSGN--S 150
           PP   ++     VE   G  +TL+CK DG P   I W +++  L   P  +  +  N  S
Sbjct: 5   PP--YFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62
Query: 151 LTVRHTNRHSAGIYLCVANNMVGSSAAASI 180
           L +   +    G Y C A N VG+ A++++
Sbjct: 63  LVINKVDHSDVGEYTCKAENSVGAVASSAV 92

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS-----YSGNSLTVRHTNRH 159
           A +V V +G++V   C+ADG+P P I W     +L   + +     +   +L VR+    
Sbjct: 392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQ 451
Query: 160 SAGIYLCVANNMVGSSAAASIALHV 184
             G YLC+A N  G+ +  +  LHV
Sbjct: 452 DNGTYLCIAANAGGNDSMPA-HLHV 475

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 31/66 (46%)
Query: 110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVAN 169
           VK+G  VT+ CK  G P PN+ W+     L GG  + + + L ++       G Y C A 
Sbjct: 321 VKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRAT 380
Query: 170 NMVGSS 175
           N  G  
Sbjct: 381 NEHGDK 386

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 95  IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---YSYSGNSL 151
           +PP I     +     ++G  +T  C+A G+P P I+W R    +   E      S   L
Sbjct: 95  VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 154
Query: 152 TVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK 187
           TVR+      G Y+C A N  G     +  L V  +
Sbjct: 155 TVRNIINSDGGPYVCRATNKAGEDEKQAF-LQVFVQ 189

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 100 IYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNN--LPGGEYSYSGNSLTVRHTN 157
           I V     V  +KG +V LEC A GNPVP I W R +            S   L + +  
Sbjct: 206 IEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQ 265
Query: 158 RHSAGIYLCVANNMVGSSAA 177
           +  AG Y CVA N  G + A
Sbjct: 266 QEDAGSYECVAENSRGKNVA 285

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 95  IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---YSYSGNSL 151
           +PP I     +     ++G  +T  C+A G+P P I+W R    +   E      S   L
Sbjct: 191 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 250
Query: 152 TVRHTNRHSAGIYLCVANNMVGSS 175
           TVR+      G Y+C A N  G  
Sbjct: 251 TVRNIINSDGGPYVCRATNKAGED 274

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 100 IYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNN--LPGGEYSYSGNSLTVRHTN 157
           I V     V  +KG +V LEC A GNPVP I W R +            S   L + +  
Sbjct: 207 IEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQ 266
Query: 158 RHSAGIYLCVANNMVGSSAA 177
           +  AG Y CVA N  G + A
Sbjct: 267 QEDAGSYECVAENSRGKNVA 286

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 113 GYSVTLECKADGNPVPNITWTRKNNNL--PGGEYSYSGN-SLTVRHTNRHSAGIYLCVAN 169
           G S+ + C A GNP P I W + N  L    G     GN +LT+R   +   G+Y C A 
Sbjct: 25  GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQAC 84
Query: 170 NMVG 173
           +++G
Sbjct: 85  SVLG 88

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 113 GYSVTLECKADGNPVPNITWTRKNNNL--PGGEYSYSGN-SLTVRHTNRHSAGIYLCVAN 169
           G S+ + C A GNP P I W + N  L    G     GN +LT+R   +   G+Y C A 
Sbjct: 681 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQAC 740
Query: 170 NMVGSS 175
           +++G +
Sbjct: 741 SVLGCA 746

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNL-PGGEYSYSGN----SLTVRHTNRHSAG 162
           V  K G +  L C+  G P+P+I W R    L    +Y  S +    +LTV    +   G
Sbjct: 17  VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEG 76
Query: 163 IYLCVANNMVGSSAAASIAL 182
           +Y C+A N VG    +S  L
Sbjct: 77  VYTCIATNEVGEVETSSKLL 96

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 110 VKKGYSVTLECKADGNPVPNITW--------TRKNNNLPGGEYSYSGNSLTVRHTNRHSA 161
           V++  + T+ C A GNP P ITW        T  NN       S S  +L +  +     
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQ 179
Query: 162 GIYLCVANNMVGSSAAASIALHV 184
           G Y CVA N  G+  +A   L+V
Sbjct: 180 GKYECVATNSAGTRYSAPANLYV 202

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY--SYSGNSLTVRHTNRHSAGIYL 165
           V++ +G    L C   GNP P+++W + ++ L            SL + +  +  AG Y 
Sbjct: 110 VKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYR 169
Query: 166 CVANNMVGSSAAASIALHV 184
           CVA N +G++ +  + L V
Sbjct: 170 CVAKNSLGTAYSKLVKLEV 188

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSG-------NSLTVRHTNRHSAG 162
           V+KG + T+ C A GNP P I+W +  + LP    + +G        +L +  +     G
Sbjct: 121 VEKGRTATMLCAAGGNPDPEISWFK--DFLPVDPAASNGRIKQLRSGALQIESSEESDQG 178
Query: 163 IYLCVANNMVGSSAAASIALHV 184
            Y CVA N  G+  +A   L+V
Sbjct: 179 KYECVATNSAGTRYSAPANLYV 200

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 97  PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-----SYSGNSL 151
           PRII       + VKK    TL CK +G P P I W +    +   E       +   +L
Sbjct: 10  PRII--EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 152 ----TVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184
               T++       G Y CVA N VG + +   +L +
Sbjct: 68  FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 97  PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-----SYSGNSL 151
           PRII       + VKK    TL CK +G P P I W +    +   E       +   +L
Sbjct: 10  PRII--EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 152 ----TVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184
               T++       G Y CVA N VG + +   +L +
Sbjct: 68  FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMV 172
           G  VTLEC A GNPVP I W RK +     ++  S   L +++ +    G Y C A N+ 
Sbjct: 222 GQMVTLECFAFGNPVPQIKW-RKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIK 280
Query: 173 G 173
           G
Sbjct: 281 G 281

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMV 172
           G  VTLEC A GNPVP I W + + +L   +++ +  +L +   +    G Y C A N  
Sbjct: 221 GQQVTLECFAFGNPVPRIKWRKVDGSL-SPQWTTAEPTLQIPSVSFEDEGTYECEAENSK 279
Query: 173 G 173
           G
Sbjct: 280 G 280

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---YSYSGNSLTVRHTNRHSAGIYLC 166
            ++G  +T  C+A G+P P I+W R    +   E      S   LTVR+      G Y+C
Sbjct: 16  AERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVC 75
Query: 167 VANNMVGSSAAAS 179
            A N  G     +
Sbjct: 76  RATNKAGEDEKQA 88

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGN-------SLTVRHTNRHSAG 162
           V+K  + T+ C A GNP P I+W +  + LP    + +G        +L +  +     G
Sbjct: 120 VEKARTATMLCAAGGNPDPEISWFK--DFLPVDPATSNGRIKQLRSGALQIESSEESDQG 177
Query: 163 IYLCVANNMVGSSAAASIALHVLCK 187
            Y CVA N  G+  +A   L+V  +
Sbjct: 178 KYECVATNSAGTRYSAPANLYVRVR 202

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 98  RIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTN 157
           R  ++   G + V++G    ++CK  G P P+++W      +       S + + VR   
Sbjct: 9   RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPV----RPDSAHKMLVRENG 64
Query: 158 RHS----------AGIYLCVANNMVGSSA 176
            HS          AGIY C+A N  G ++
Sbjct: 65  VHSLIIEPVTSRDAGIYTCIATNRAGQNS 93

>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX Length = 98

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 97  PRIIYVSGAGKVEVKKGYSVTLECKADG-NPVPNITWTR-KNNNLPGGEYSYSGNSLTVR 154
           P ++ V       V+ G  VT  C A   +P   + WTR  N  LP     ++G  LT+R
Sbjct: 9   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG-ILTIR 67
Query: 155 HTNRHSAGIYLCVANNMVGSSAAASIALHV 184
           +     AG Y+C  +NM       +  LHV
Sbjct: 68  NVQPSDAGTYVCTGSNMFAMDQGTA-TLHV 96

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNL-PGGEYSYS----GNSLTVRHTNRHSAG 162
           V++  G S T +C   G     ITW + N  + PGG Y  +      +LTV    +  AG
Sbjct: 15  VDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAG 74
Query: 163 IYLCVANNMVGSSAAAS 179
            Y C A+N+ G  + ++
Sbjct: 75  QYTCYASNVAGKDSCSA 91

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNL-PGGEYSYS----GNSLTVRHTNRHSAG 162
           V++  G S T +C   G     ITW + N  + PGG Y  +      +LTV    +  AG
Sbjct: 15  VDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAG 74
Query: 163 IYLCVANNMVGSSAAAS 179
            Y C A+N+ G  + ++
Sbjct: 75  QYTCYASNVAGKDSCSA 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.89
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.89
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.88
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.88
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.88
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.88
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.88
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.87
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.87
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.87
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.87
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.87
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.87
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.87
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.86
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.86
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.85
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.85
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.85
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.85
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.85
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.85
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.85
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.85
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.85
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.84
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.84
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.84
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.84
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.84
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.84
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.84
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.83
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.83
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.83
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.83
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.83
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.83
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.83
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.83
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.83
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.83
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.82
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.82
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.82
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.82
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.82
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.82
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.82
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.81
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.81
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.81
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.81
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.81
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.81
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.81
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.81
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.8
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.8
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.8
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.79
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.79
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.79
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.79
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.79
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.79
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.78
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.78
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.78
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.78
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.78
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.78
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.78
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.78
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.77
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.77
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.77
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.77
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.77
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.77
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.77
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.76
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.76
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.76
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.75
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.75
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.75
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.75
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.75
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.75
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.75
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.74
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.74
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.74
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.74
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.74
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.74
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.73
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.73
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.73
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.72
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.72
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.72
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.72
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.72
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.72
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.72
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.71
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.71
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.71
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.71
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.71
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.71
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.71
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.7
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.7
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.7
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.7
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.69
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.69
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.69
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.69
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.68
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.68
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.67
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.67
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.67
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.67
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.67
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.66
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.66
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.66
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.66
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.66
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.66
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.66
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.66
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.66
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.66
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.66
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.66
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.65
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.65
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.65
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.64
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.64
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.64
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.64
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.64
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.64
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.64
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.64
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.64
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.63
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.63
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.63
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.63
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.63
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.63
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.62
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.62
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.62
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.62
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.61
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.61
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.61
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.61
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.61
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.61
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.61
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.6
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.6
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.6
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.6
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.6
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.59
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.59
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.59
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.59
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.59
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.59
1he7_A	126	High affinity nerve growth factor receptor; transf	99.58
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.58
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.58
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.58
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.58
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.58
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.58
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.58
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.58
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.58
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.58
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.58
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.57
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.57
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.57
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.56
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.56
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.56
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.56
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.56
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.55
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.55
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.55
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.54
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.54
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.54
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.54
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.54
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.54
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.54
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.53
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.53
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.53
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.53
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.53
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.52
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.52
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.52
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.52
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.52
2ens_A	96	Advanced glycosylation END product-specific recept	99.52
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.51
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.51
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.5
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.5
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.5
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.5
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.49
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.49
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.49
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.49
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.49
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.49
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.48
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.48
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.48
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.48
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.48
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.47
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.47
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.47
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.47
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.47
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.47
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.47
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.45
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.45
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.44
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.44
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.44
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.44
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.43
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.43
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.43
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.43
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.42
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.42
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.42
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.42
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.42
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.42
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.41
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.41
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.4
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.4
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.4
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.4
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.4
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.39
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.39
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.39
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.39
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.39
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.39
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.38
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.38
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.38
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.38
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.38
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.37
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.37
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.37
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.37
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.37
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.37
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.36
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.36
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.36
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.36
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.36
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.35
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.35
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.34
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.34
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.34
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.33
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.33
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.33
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.33
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.32
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.32
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.32
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.3
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.28
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.28
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.28
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.27
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.27
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.27
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.26
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.26
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.25
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.25
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.24
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.24
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.24
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.24
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.23
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.23
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.23
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.23
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.23
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.22
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.22
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.21
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.2
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.2
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.2
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.2
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.19
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.19
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.18
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.18
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.17
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.17
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.16
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.16
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	99.16
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.15
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.15
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.15
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.13
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.13
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.12
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.12
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.12
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.11
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.11
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.09
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.09
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.09
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	99.09
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.09
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	99.07
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.07
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.06
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.05
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.05
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.05
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.04
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.03
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.03
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.02
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.02
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.02
1xt5_A	135	Variable region-containing chitin-binding protein	99.01
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.01
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.01
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.0
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.0
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	98.99
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.99
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	98.98
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.98
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	98.98
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.97
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.97
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.97
3khq_A	133	B-cell antigen receptor complex-associated protei	98.96
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	98.96
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.96
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	98.96
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.95
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.95
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.95
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.94
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.94
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.94
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	98.94
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	98.94
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.94
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	98.93
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	98.93
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.91
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.91
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.9
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	98.9
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	98.89
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.89
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.89
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.88
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	98.88
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.88
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.88
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.87
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	98.86
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.86
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.85
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	98.85
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.85
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	98.85
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.84
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.84
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	98.84
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.83
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.83
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	98.83
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.83
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	98.83
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.83
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	98.82
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	98.82
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	98.81
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.81
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.81
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	98.81
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.81
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	98.81
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.81
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	98.8
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.8
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.8
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.79
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.78
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	98.78
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	98.77
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.77
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.77
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.77
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.77
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	98.76
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.76
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.75
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	98.75
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.75
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.74
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.73
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.73
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	98.72
1he7_A	126	High affinity nerve growth factor receptor; transf	98.72
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.72
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.71
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	98.71
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.71
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	98.71
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.71
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	98.7
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	98.7
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	98.69
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.69
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.69
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.68
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	98.68
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	98.67
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.67
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	98.67
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	98.67
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.66
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.66
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.66
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.66
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	98.65
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.65
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	98.64
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.64
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.64
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.64
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	98.64
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	98.64
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	98.64
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	98.07
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.63
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	98.62
1xiw_B	79	T-cell surface glycoprotein CD3 delta chain; CD3-e	98.6
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.59
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.59
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.59
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.59
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.58
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.58
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.57
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.57

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.89  E-value=4.4e-22  Score=134.72  Aligned_cols=117  Identities=16%  Similarity=0.267  Sum_probs=86.3

Q ss_pred             eEEEEEecccceeEEeeccceeeEEEEEEEE---------------------cCCeeEEecCCceEEEecCCcEEEEeEe
Q psy15738         64 YILAMEKEEEERKKKKKRKKRKKKKKKKEKR---------------------IPPRIIYVSGAGKVEVKKGYSVTLECKA  122 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~---------------------~~p~~~~~~~~~~~~~~~g~~~~l~C~~  122 (187)
                      .|..+..+|+|.|+|.+..+.......+.+.                     .+|.+....   ...+.+|+.+.|.|.+
T Consensus        64 ~I~~v~~~D~G~Y~C~a~Ng~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~---~~~v~~g~~v~l~C~v  140 (207)
T 3rbs_A           64 FMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL---SWEVTGECNVLLKCKV  140 (207)
T ss_dssp             EESCCCGGGCEEEEEEEEETTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE---EEEEETTTEEEEEEEE
T ss_pred             EECCCChhhCEEEEEEEECCCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC---CcEEcCCCcEEEEEEE
Confidence            3778888999999995554444444443221                     256654222   3578899999999999


Q ss_pred             ccC-CCCcEEEEeCCeeCCCCcEE-E--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        123 DGN-PVPNITWTRKNNNLPGGEYS-Y--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       123 ~g~-p~p~~~W~~~~~~~~~~~~~-~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      .|. |.|.+.|++++..+...... .  ....|.|.++..+|+|.|.|.|.|..|.. +..+.|.+
T Consensus       141 ~g~~P~p~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~~  205 (207)
T 3rbs_A          141 ANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKD-KSRLKLVD  205 (207)
T ss_dssp             ESCCTTCEEEEEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEE-EEEEEECC
T ss_pred             eCCCCCCEEEEEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEE-EEEEEEec
Confidence            998 89999999999887544221 1  12469999999999999999999999988 57777654

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.89  E-value=4.8e-23  Score=138.98  Aligned_cols=159  Identities=11%  Similarity=0.112  Sum_probs=101.2

Q ss_pred             CCCCCCeeEEEEcCeeeeeeee---cCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEE
Q psy15738          2 FADSRPESTFWIFGKPITRIMF---ADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKK   78 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~---~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c   78 (187)
                      .+.|.|+|.|+++|.++.....   ....+....             -+..++.+.... ....+.|..++.+|.|.|+|
T Consensus        21 ~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C   86 (203)
T 4fa8_A           21 SLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEW-------------PFRGFFDIHRSA-NTFFLVVTAANISHDGNYLC   86 (203)
T ss_dssp             TCSTTSEEEEEEEETTTEEEEEEEEETTEEEECG-------------GGBTTEEEEEET-TEEEEEESSCCGGGCEEEEE
T ss_pred             CCCCCcEEEEEEcCCCcceEEEEecCCceEEeec-------------cccceEEEEEcC-CEEEEEEccCCHHHCeEEEE
Confidence            3568999999999877653221   110111100             011222222211 12233477889999999999


Q ss_pred             ee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCC-----CcEE-EeCcE
Q psy15738         79 KK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG-----GEYS-YSGNS  150 (187)
Q Consensus        79 ~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~-----~~~~-~~~~~  150 (187)
                      .+  ..+..+..+.|.|..||.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++++..+..     .+.. ..++.
T Consensus        87 ~a~n~~g~~~~~~~l~V~~p~~~~~~--~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g~  164 (203)
T 4fa8_A           87 RMKLGETEVTKQEHLSVVKPLTLSVH--SERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGS  164 (203)
T ss_dssp             EEEETTEEEEEEEEEEEEEEEEEEEE--EEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECTTSC
T ss_pred             EEEcCCCcEEEEEEEEecCCceeeec--ceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeCCCC
Confidence            44  4555667788888877766432  3345577899999999999999999999987654422     1111 12333


Q ss_pred             ---EEEecCCCCCCeEEEEEEecCCCCcc
Q psy15738        151 ---LTVRHTNRHSAGIYLCVANNMVGSSA  176 (187)
Q Consensus       151 ---l~i~~~~~~d~g~y~C~~~n~~g~~~  176 (187)
                         +.+.++..+|+|.|+|.|.|..|..+
T Consensus       165 l~il~i~~v~~~D~G~YtC~A~N~~G~a~  193 (203)
T 4fa8_A          165 LSVAVDLSLPKPWHLPVTCVGKNDKEEAH  193 (203)
T ss_dssp             EEEEEEEEECSSCCCCEEEEEESSSCEEE
T ss_pred             EEEEEECCCCHHHCEEEEEEEEcCCCEEE
Confidence               44568999999999999999999874

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.88  E-value=1.3e-20  Score=132.85  Aligned_cols=118  Identities=22%  Similarity=0.381  Sum_probs=94.3

Q ss_pred             EEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC
Q psy15738         65 ILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG  142 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~  142 (187)
                      |..+..+|.|.|+|.+  ..+.....+.|.|..+|.+.  ..+....+..|+.+.|.|.+.|.|.|.+.|++++..+...
T Consensus       159 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~--~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~  236 (284)
T 2rik_A          159 MYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFR--KKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG  236 (284)
T ss_dssp             ECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCC--SCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBT
T ss_pred             ECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcce--eCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCC
Confidence            5677788999999944  44566778899999988874  3344567889999999999999999999999999887544


Q ss_pred             c-EEE--e--CcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        143 E-YSY--S--GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       143 ~-~~~--~--~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      . ...  .  ...|.|.++..+|.|.|.|.|.|..|.. +..+.|.|.
T Consensus       237 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~  283 (284)
T 2rik_A          237 KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSY-TCVGSITLK  283 (284)
T ss_dssp             TTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             CCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCce-eEEEEEEEc
Confidence            3 221  1  1479999999999999999999999988 577777763

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.88  E-value=4.3e-22  Score=132.40  Aligned_cols=156  Identities=24%  Similarity=0.402  Sum_probs=108.2

Q ss_pred             ceEEccCCCCeeEEEeC-eEee---eccEEEeeccccccceeEEEEEecccceeEEeec----cceeeEEEEEEEEcCCe
Q psy15738         27 AIMFADSRPESTFWIFG-KLIT---SCSYIILATSLLHYLSYILAMEKEEEERKKKKKR----KKRKKKKKKKEKRIPPR   98 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~~-~~~~---~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~----~~~~~~~~~l~v~~~p~   98 (187)
                      .|.+.........|+++ ..+.   ..++.....+.    ..|..++.+|.|.|+|...    .......+.|.|..+|.
T Consensus        23 ~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~----L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~   98 (189)
T 2v5t_A           23 VCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN----LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPA   98 (189)
T ss_dssp             CCEEECSSCCEEEEEC-----CBCCCTTEEECTTSC----EEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEE
T ss_pred             EEEEcCCCCCEEEEEECCccceeccCCeEEEecCCC----EEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCC
Confidence            34444445556666643 2222   23443333333    3377888999999999543    22334567778887777


Q ss_pred             eEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-EE--eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738         99 IIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-SY--SGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus        99 ~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +.....+....+..|+.+.|.|.+.|.|.|.+.|++++..+..... ..  ....|.|.++..+|.|.|.|.|.|..|..
T Consensus        99 ~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  178 (189)
T 2v5t_A           99 ISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGED  178 (189)
T ss_dssp             EECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             cccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCce
Confidence            6533222244567799999999999999999999999998765432 22  24689999999999999999999999988


Q ss_pred             ceeeEEEEEEeC
Q psy15738        176 AAASIALHVLCK  187 (187)
Q Consensus       176 ~s~~~~l~v~~~  187 (187)
                       +..+.|.|.++
T Consensus       179 -~~~~~l~V~vq  189 (189)
T 2v5t_A          179 -EKQAFLQVFVQ  189 (189)
T ss_dssp             -EEEEEEEEECC
T ss_pred             -eEEEEEEEEeC
Confidence             58888888764

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.88  E-value=1.1e-21  Score=131.29  Aligned_cols=117  Identities=17%  Similarity=0.211  Sum_probs=92.0

Q ss_pred             eEEEEEecccceeEEeeccc---eeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCC-cEEEEeCCeeC
Q psy15738         64 YILAMEKEEEERKKKKKRKK---RKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP-NITWTRKNNNL  139 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~~~---~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~  139 (187)
                      .|..++..|.|.|+|.+...   ..+..+.|.|..+|.+..  .+....+.+|+.+.|.|.+.|.|.| .+.|++++..+
T Consensus        71 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~--~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~  148 (195)
T 2c5d_C           71 RITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLE--EPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPL  148 (195)
T ss_dssp             EESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEE--CCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBS
T ss_pred             EEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEc--CCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEec
Confidence            36788889999999954432   334458899999998753  3445678889999999999999999 99999999887


Q ss_pred             CCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        140 PGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       140 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      ...........|.|.++.  |+|.|.|.|.|..|...+..+.|.|
T Consensus       149 ~~~~~~~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          149 ATAPGHGPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             SSSTTSSCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cCCCCcCCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            554322345678998887  7899999999999987557888887

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.88  E-value=9.9e-22  Score=131.02  Aligned_cols=155  Identities=21%  Similarity=0.359  Sum_probs=110.9

Q ss_pred             eEEccCCCCeeEEEeC-eEee--eccEEEeeccccccceeEEEEEecccceeEEeecc---ceeeEEEEEEEEcCCeeEE
Q psy15738         28 IMFADSRPESTFWIFG-KLIT--SCSYIILATSLLHYLSYILAMEKEEEERKKKKKRK---KRKKKKKKKEKRIPPRIIY  101 (187)
Q Consensus        28 ~~~~~~~~~~~~w~~~-~~~~--~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~---~~~~~~~~l~v~~~p~~~~  101 (187)
                      |.+.+.......|+++ ..+.  ..++.+...+   ....|..++..|.|.|+|....   ......+.|.|..+|.+..
T Consensus        29 C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~  105 (192)
T 2iep_A           29 CAVESYPQPEISWTRNKILIKLFDTRYSIRENG---QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITR  105 (192)
T ss_dssp             CCEEEESCCEEEEEETTEECCTTCTTEEEEGGG---TEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEE
T ss_pred             eeCCCCCCCeEEEEECCEEccccCccEEEcCCc---cEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCcccc
Confidence            3333334446666644 3332  2344333322   1234778899999999995442   2245677888888888753


Q ss_pred             ecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-E-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceee
Q psy15738        102 VSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-S-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAAS  179 (187)
Q Consensus       102 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~  179 (187)
                        .+....+..|+.+.|.|.+.|.|.+.+.|++++..+..... . ...+.|.|.++..+|.|.|.|.|.|..|...+..
T Consensus       106 --~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~  183 (192)
T 2iep_A          106 --PPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKL  183 (192)
T ss_dssp             --CCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             --CCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEE
Confidence              33456788999999999999999999999999988765432 2 2456899999999999999999999999876678


Q ss_pred             EEEEEEeC
Q psy15738        180 IALHVLCK  187 (187)
Q Consensus       180 ~~l~v~~~  187 (187)
                      +.|.|.++
T Consensus       184 ~~l~V~~p  191 (192)
T 2iep_A          184 VKLEVEVF  191 (192)
T ss_dssp             EEEEEEC-
T ss_pred             EEEEEEeC
Confidence            88888764

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.88  E-value=1.5e-20  Score=127.19  Aligned_cols=123  Identities=16%  Similarity=0.296  Sum_probs=92.6

Q ss_pred             eeEEEEEecccceeEEeeccceeeEEEEEEE--Ec--------------------CCeeEEecCCceEEEecCCcEEEEe
Q psy15738         63 SYILAMEKEEEERKKKKKRKKRKKKKKKKEK--RI--------------------PPRIIYVSGAGKVEVKKGYSVTLEC  120 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v--~~--------------------~p~~~~~~~~~~~~~~~g~~~~l~C  120 (187)
                      ..|..++.+|.|.|+|.+..........+.+  ..                    .|.+. ...+....+..|+.+.|.|
T Consensus        61 L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~v~~g~~~~l~C  139 (212)
T 2r15_A           61 LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL-GGLPDVVTIQEGKALNLTC  139 (212)
T ss_dssp             EEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEE-EBCCSEEEEETTCCEEEEE
T ss_pred             EEECCCCcccCEEEEEEEecCCcceEEEEEEEEeeccchhhhccccCcccccccCCCccc-ccCCCcEEEccCCeEEEEE
Confidence            3478899999999999655444343344443  21                    33333 3334567788999999999


Q ss_pred             EeccCCCCcEEEEeCCeeCCCCc-EEEeC-----cEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEeC
Q psy15738        121 KADGNPVPNITWTRKNNNLPGGE-YSYSG-----NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK  187 (187)
Q Consensus       121 ~~~g~p~p~~~W~~~~~~~~~~~-~~~~~-----~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~~  187 (187)
                      .+.|.|.|.+.|++++..+.... .....     ..|.|.++...|.|.|.|.|.|..|.. +..+.|.|.++
T Consensus       140 ~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~P  211 (212)
T 2r15_A          140 NVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE-TSDFTVSVFIP  211 (212)
T ss_dssp             EEECSSCCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECC
T ss_pred             EEcCCCCceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcE-EEEEEEEEEcc
Confidence            99999999999999998876543 22221     389999999999999999999999988 68888888764

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.87  E-value=1.3e-21  Score=130.96  Aligned_cols=158  Identities=21%  Similarity=0.290  Sum_probs=109.5

Q ss_pred             ceEEccCCCCeeEEEeC-eEeee--ccEEEeeccccccceeEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEE
Q psy15738         27 AIMFADSRPESTFWIFG-KLITS--CSYIILATSLLHYLSYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIY  101 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~~-~~~~~--~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~  101 (187)
                      .|.+.+.+.....|+++ ..+..  .++.+...........|..++.+|.|.|+|.+  ..+..+..+.|.|..+|.+..
T Consensus        25 ~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~  104 (197)
T 2j8h_A           25 VCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHL  104 (197)
T ss_dssp             EEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEEEEEECC
T ss_pred             EEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEcCCCcCCC
Confidence            34444545556666644 33332  23333222222224447889999999999943  345557788888887776532


Q ss_pred             ec---CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE----eCcEEEEec-CCCCCCeEEEEEEecCC
Q psy15738        102 VS---GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY----SGNSLTVRH-TNRHSAGIYLCVANNMV  172 (187)
Q Consensus       102 ~~---~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~----~~~~l~i~~-~~~~d~g~y~C~~~n~~  172 (187)
                      ..   .+....+..|+.+.|.|.+.|.|.|.+.|++++..+.... ...    ....|.|.+ +...|.|.|.|.|.|..
T Consensus       105 ~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~  184 (197)
T 2j8h_A          105 PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF  184 (197)
T ss_dssp             SSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETT
T ss_pred             CccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCC
Confidence            21   1234567889999999999999999999999998775432 221    235789999 99999999999999999


Q ss_pred             CCcceeeEEEEEE
Q psy15738        173 GSSAAASIALHVL  185 (187)
Q Consensus       173 g~~~s~~~~l~v~  185 (187)
                      |.. +..+.|.|.
T Consensus       185 g~~-~~~~~l~V~  196 (197)
T 2j8h_A          185 GID-QKTVELDVA  196 (197)
T ss_dssp             EEE-EEEEEEEEE
T ss_pred             CcE-eEEEEEEEe
Confidence            987 688888774

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.87  E-value=1.2e-20  Score=145.25  Aligned_cols=119  Identities=22%  Similarity=0.391  Sum_probs=96.0

Q ss_pred             eEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCC
Q psy15738         64 YILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG  141 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~  141 (187)
                      .|.++..+|.|.|+|.+  ..+..+..+.|.|..+|.+.  ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus       350 ~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~--~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~  427 (570)
T 3b43_A          350 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFR--KKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS  427 (570)
T ss_dssp             EEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEEC--SCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCS
T ss_pred             EECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeee--cCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcC
Confidence            36778889999999944  45566778899999999874  334456778999999999999999999999999998865


Q ss_pred             Cc-EEE--eC--cEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        142 GE-YSY--SG--NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       142 ~~-~~~--~~--~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      .. +..  .+  ..|.|.++..+|.|.|.|.|.|..|.. +..+.|.|.
T Consensus       428 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v~  475 (570)
T 3b43_A          428 GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSD-TCVGSITLK  475 (570)
T ss_dssp             SSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred             CCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeE-EEEEEEEec
Confidence            43 221  22  479999999999999999999999987 467777664

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.87  E-value=3.5e-20  Score=125.58  Aligned_cols=158  Identities=22%  Similarity=0.338  Sum_probs=112.5

Q ss_pred             ceEEccCCCCeeEEEeC-eEee--eccEEEeeccccccceeEEEEEe-cccceeEEeec--cce-eeEEEEEEEEcC---
Q psy15738         27 AIMFADSRPESTFWIFG-KLIT--SCSYIILATSLLHYLSYILAMEK-EEEERKKKKKR--KKR-KKKKKKKEKRIP---   96 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~~-~~~~--~~~~~~~~~~~~~~~~~~~~v~~-~d~g~y~c~~~--~~~-~~~~~~l~v~~~---   96 (187)
                      .|.+.+.......|+++ ..+.  ..++.+...........|..+.. .|.|.|+|...  .+. .+..+.|.|..+   
T Consensus        27 ~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~  106 (212)
T 2yd1_A           27 YCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKT  106 (212)
T ss_dssp             EEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCS
T ss_pred             EEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCC
Confidence            35555555556667644 4442  34444433222223344667777 89999999543  333 667888888865   


Q ss_pred             ----CeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCC--CcEEEeCcEEEEecCCCCCCeEEEEEEec
Q psy15738         97 ----PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG--GEYSYSGNSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus        97 ----p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                          |.+.  ..+....+..|+.+.|.|.+.|.|.|.+.|++++..+..  .......+.|.|.++..+|.|.|.|.|.|
T Consensus       107 ~~~~p~~~--~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  184 (212)
T 2yd1_A          107 PAGFPVIT--QGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAEN  184 (212)
T ss_dssp             CTTCCEEE--ECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEETTEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCCeeE--eCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccCCeEEEccCChhhCEEEEEEeec
Confidence                4443  234456778899999999999999999999999988754  33445667999999999999999999999


Q ss_pred             CCCCcceeeEEEEEEe
Q psy15738        171 MVGSSAAASIALHVLC  186 (187)
Q Consensus       171 ~~g~~~s~~~~l~v~~  186 (187)
                      ..|...+..+.|.|..
T Consensus       185 ~~G~~~s~~~~l~V~~  200 (212)
T 2yd1_A          185 SMGTEHSKATNLYVKV  200 (212)
T ss_dssp             TTEEEECCCEEEEEEC
T ss_pred             CCCceeEEEEEEEEEe
Confidence            9998854557888864

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.87  E-value=1.4e-20  Score=127.55  Aligned_cols=158  Identities=19%  Similarity=0.226  Sum_probs=107.7

Q ss_pred             ceEEccCCCCeeEEEeC-eEeeeccEEEeecc-ccccceeEEEE-EecccceeEEee--ccceeeEEEEEEEEcC-----
Q psy15738         27 AIMFADSRPESTFWIFG-KLITSCSYIILATS-LLHYLSYILAM-EKEEEERKKKKK--RKKRKKKKKKKEKRIP-----   96 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~-~~~~~~~~~~v-~~~d~g~y~c~~--~~~~~~~~~~l~v~~~-----   96 (187)
                      .|.+.+.+.....|+++ ..+...+....... .......|..+ ..+|.|.|+|.+  ..+..+..+.|.|..+     
T Consensus        27 ~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~  106 (212)
T 2yd6_A           27 ICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPR  106 (212)
T ss_dssp             EEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEECGGGCCT
T ss_pred             EEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEeccCccCC
Confidence            35554445556666644 55544444333211 11222336667 488999999944  3444566778888754     


Q ss_pred             --CeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC----cEEE----eCcEEEEecCCCCCCeEEEE
Q psy15738         97 --PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG----EYSY----SGNSLTVRHTNRHSAGIYLC  166 (187)
Q Consensus        97 --p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~----~~~~----~~~~l~i~~~~~~d~g~y~C  166 (187)
                        |.+.  ..+....+..|+.+.|.|.+.|.|.|.+.|++++..+...    +...    ....|.|.++..+|.|.|.|
T Consensus       107 ~~p~~~--~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  184 (212)
T 2yd6_A          107 GFPTID--MGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC  184 (212)
T ss_dssp             TCCEEE--ECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             Ccceee--cCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEE
Confidence              4443  2344467788999999999999999999999999887543    2111    13689999999999999999


Q ss_pred             EEecCCCCcceeeEEEEEEe
Q psy15738        167 VANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       167 ~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .|.|..|...+..+.|.|.+
T Consensus       185 ~a~N~~G~~~s~~a~l~~~~  204 (212)
T 2yd6_A          185 VATNSAGTRYSAPANLYVRG  204 (212)
T ss_dssp             EEEETTEEEECCCEEEEEEC
T ss_pred             EEECCCCccccccccEEEEe
Confidence            99999999877788888764

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.87  E-value=4.7e-21  Score=147.51  Aligned_cols=120  Identities=18%  Similarity=0.273  Sum_probs=95.4

Q ss_pred             eeEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCC
Q psy15738         63 SYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLP  140 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~  140 (187)
                      ..|..+..+|.|.|+|.+  ..+.....+.|.|..+|.+..  .+....+..|+.+.|.|.+.|.|+|.+.|++++..+.
T Consensus       442 L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~--~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~  519 (570)
T 3b43_A          442 IHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVK--KLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIV  519 (570)
T ss_dssp             EEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEE--CCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECC
T ss_pred             EEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccc--cCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEec
Confidence            447788899999999954  455666778899999998853  3344567889999999999999999999999986542


Q ss_pred             -CC-cEEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        141 -GG-EYSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       141 -~~-~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                       .. ....    ....|.|.++..+|+|.|.|.|.|..|.. +..+.|.|.
T Consensus       520 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~a~L~V~  569 (570)
T 3b43_A          520 RESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQ-ECFATLSVL  569 (570)
T ss_dssp             CCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEE-EEEEEECCB
T ss_pred             cCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEE-EEEEEEEEe
Confidence             22 2222    12579999999999999999999999998 588888764

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.87  E-value=1.4e-20  Score=124.55  Aligned_cols=115  Identities=19%  Similarity=0.300  Sum_probs=92.5

Q ss_pred             eEEEEEecccceeEEeecc---ceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCC-cEEEEeCCeeC
Q psy15738         64 YILAMEKEEEERKKKKKRK---KRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP-NITWTRKNNNL  139 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~~---~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~  139 (187)
                      .|..++.+|.|.|+|....   ...+..+.|.|..+|.+...  +....+..|+.+.|.|.+.|.|.| .+.|++++..+
T Consensus        63 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~  140 (182)
T 1rhf_A           63 SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVE--PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKI  140 (182)
T ss_dssp             EESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEEC--CCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEEC
T ss_pred             EEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEec--CcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeEC
Confidence            3678888999999995543   34567889999999987643  344678899999999999999999 99999999887


Q ss_pred             CCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        140 PGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       140 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      .....  ....|.|.++  .|+|.|.|.|.|..|...+..+.|.|
T Consensus       141 ~~~~~--~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          141 GGPAP--SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             SCSEE--SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCCCC--CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence            65432  5578888888  48999999999999987556777766

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.87  E-value=6e-21  Score=140.36  Aligned_cols=120  Identities=23%  Similarity=0.374  Sum_probs=98.8

Q ss_pred             eeEEEEEecccceeEEeecc--ce-eeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeC
Q psy15738         63 SYILAMEKEEEERKKKKKRK--KR-KKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNL  139 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~--~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~  139 (187)
                      ..|..+..+|.|.|+|.+..  +. .+..+.|.|..+|.+.... .....+..|+.+.|.|.+.|.|.|.+.|++++..+
T Consensus       272 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~  350 (395)
T 1bih_A          272 LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKP-EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL  350 (395)
T ss_dssp             EEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECC-CSEEEECTTSCEEEECEEEEESCCCCEEEETTEEC
T ss_pred             EEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCC-CcceEecCCCeEEEEEEECcccCCeeEEEECCEEC
Confidence            44778889999999995543  22 3348899999988875332 22367889999999999999999999999999998


Q ss_pred             CCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        140 PGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       140 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      ...+.....+.|.|.++..+|+|.|.|.|.|..|.. +..+.|.|
T Consensus       351 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~V  394 (395)
T 1bih_A          351 SGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDK-YFETLVQV  394 (395)
T ss_dssp             CSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             CCCceEEECCEEEEeeCCcccCEEEEEEEEccCCCc-eEEEEEEE
Confidence            777666667799999999999999999999999988 57877776

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.86  E-value=1.1e-20  Score=135.12  Aligned_cols=119  Identities=18%  Similarity=0.276  Sum_probs=92.8

Q ss_pred             EEEEEecccceeEEeecc----ceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCC-cEEEEeCCeeC
Q psy15738         65 ILAMEKEEEERKKKKKRK----KRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP-NITWTRKNNNL  139 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~----~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~  139 (187)
                      +..+...|.|.|+|.+..    .....++.|.|.++|.+..... ....+..|+.+.|.|.+.|.|.| .+.|++++..+
T Consensus       181 i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~-~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l  259 (313)
T 4fqp_A          181 LVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGY-DNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL  259 (313)
T ss_dssp             ECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECC-CSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSC
T ss_pred             ecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccc-cceeecCCCeEEEEEEecCCCCCcEEEEEECCEEC
Confidence            344556688999995542    3345567788888888753332 33456678999999999999998 69999999887


Q ss_pred             CCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        140 PGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       140 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .... ...++.|.|.++...|+|.|.|.|.|..|.. +..+.|.|.+
T Consensus       260 ~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~  304 (313)
T 4fqp_A          260 PPFA-VAQGAQLLIRPVDKPINTTLICNVTNALGAR-QAELTVQVKE  304 (313)
T ss_dssp             CTTE-EEETTEEEECCCSSCCEEEEEEEEECSSCEE-EEEEEEEEEC
T ss_pred             CCce-EEeCCEEEECcCChhhCEEEEEEEEeCCCcE-EEEEEEEEEe
Confidence            6553 3456789999999999999999999999988 6888888865

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.86  E-value=1.2e-20  Score=133.39  Aligned_cols=122  Identities=29%  Similarity=0.501  Sum_probs=96.8

Q ss_pred             EEEEEecccceeEEeec----cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCC
Q psy15738         65 ILAMEKEEEERKKKKKR----KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLP  140 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~----~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~  140 (187)
                      |..+..+|.|.|+|.+.    +......+.|.|..+|.+.....+....+..|+.+.|.|.+.|.|.|.+.|++++..+.
T Consensus       159 i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~  238 (291)
T 1qz1_A          159 IRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIE  238 (291)
T ss_dssp             ETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECC
T ss_pred             EccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECc
Confidence            77888899999999543    33345677888888887764333334567789999999999999999999999998876


Q ss_pred             CCc-----EEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEeC
Q psy15738        141 GGE-----YSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK  187 (187)
Q Consensus       141 ~~~-----~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~~  187 (187)
                      ...     ...  ....|.|.++..+|+|.|.|.|.|..|.. +..+.|.|..|
T Consensus       239 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~k  291 (291)
T 1qz1_A          239 NEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQ-DASIHLKVFAK  291 (291)
T ss_dssp             CC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECC
T ss_pred             CCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCce-EEEEEEEEEcC
Confidence            542     222  24579999999999999999999999988 68999998765

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.85  E-value=3.5e-20  Score=123.40  Aligned_cols=154  Identities=13%  Similarity=0.148  Sum_probs=105.8

Q ss_pred             eEEccCC-CCeeEEEe-C-eEee--eccEEEeeccccccceeEEEEEecccceeEEeecc---ceeeEEEEEEEEcCCee
Q psy15738         28 IMFADSR-PESTFWIF-G-KLIT--SCSYIILATSLLHYLSYILAMEKEEEERKKKKKRK---KRKKKKKKKEKRIPPRI   99 (187)
Q Consensus        28 ~~~~~~~-~~~~~w~~-~-~~~~--~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~---~~~~~~~~l~v~~~p~~   99 (187)
                      |.+.+.. .....|++ + ..+.  ..++.+...........|..++.+|.|.|+|....   ...+..+.|.|..+|.+
T Consensus        24 C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~  103 (191)
T 1epf_A           24 CQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMF  103 (191)
T ss_dssp             EEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEE
T ss_pred             EECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceE
Confidence            4444433 45566664 2 3333  23333333222334444778899999999994432   45667788888888887


Q ss_pred             EEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCC---CcEE-EeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        100 IYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG---GEYS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       100 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~---~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ..  .+....+..|+.+.|.|.+.|.|.|.+.|++++..+..   .+.. ..++.|.|.++..+|.|.|.|.|.|..+..
T Consensus       104 ~~--~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  181 (191)
T 1epf_A          104 KN--APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE  181 (191)
T ss_dssp             EE--CCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTE
T ss_pred             ec--CCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEECCCChhhCEEEEEEEEEeccee
Confidence            53  34456778999999999999999999999999987642   2222 245689999999999999999999988654


Q ss_pred             ceeeEEEEE
Q psy15738        176 AAASIALHV  184 (187)
Q Consensus       176 ~s~~~~l~v  184 (187)
                       .....+.|
T Consensus       182 -~~~~~i~v  189 (191)
T 1epf_A          182 -INFKDIQV  189 (191)
T ss_dssp             -EEEEEEEE
T ss_pred             -EEEEEEEE
Confidence             24444444

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.85  E-value=1.1e-19  Score=120.98  Aligned_cols=121  Identities=21%  Similarity=0.269  Sum_probs=95.4

Q ss_pred             eeEEEEEecccceeEEeecc-ceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEe--CCeeC
Q psy15738         63 SYILAMEKEEEERKKKKKRK-KRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTR--KNNNL  139 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~--~~~~~  139 (187)
                      ..|..++.+|.|.|+|.+.. ...+..+.|.|..+|.+...  +....+..|+.+.|.|.+.|.|.|.+.|++  ++..+
T Consensus        58 L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~l~V~~~p~~~~~--~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~  135 (190)
T 2wv3_A           58 YRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGH--KRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFE  135 (190)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEECCCEEEEE--CSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEE
T ss_pred             EEEecCCcccCEEEEEEEEeCCcccccEEEEEecCCccccc--CCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCcee
Confidence            33778888999999994432 56678889999999988643  445678899999999999999999999999  66654


Q ss_pred             C----CCcEEEe----CcEEEEecCC-CCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        140 P----GGEYSYS----GNSLTVRHTN-RHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       140 ~----~~~~~~~----~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .    ..++...    ...|.|.++. .+|.|.|.|.|.|..|.. +..+.|.|.+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~V  190 (190)
T 2wv3_A          136 EISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSA-SVSTVLRVRV  190 (190)
T ss_dssp             ECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEE-EEEEEEEEEC
T ss_pred             eeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcc-eeEEEEEEEC
Confidence            2    2233221    1379999999 799999999999999988 5788887753

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.85  E-value=6.8e-20  Score=134.32  Aligned_cols=118  Identities=25%  Similarity=0.374  Sum_probs=97.6

Q ss_pred             EEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC
Q psy15738         65 ILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG  142 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~  142 (187)
                      |..+..+|.|.|+|.+  ..+.....+.|.|..+|.+..  .+....+..|+.+.|.|.+.|.|.|.+.|++++..+...
T Consensus       261 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~--~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~  338 (382)
T 1cs6_A          261 IQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLD--VITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ  338 (382)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEE--CCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCC
T ss_pred             EccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCccc--CCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCC
Confidence            5577788999999944  445567778889988888753  334567889999999999999999999999999988654


Q ss_pred             -cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        143 -EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       143 -~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                       +.....+.|.|.++..+|+|.|.|.|.|..|.. +..+.|.|.
T Consensus       339 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~  381 (382)
T 1cs6_A          339 NRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTV-YASAELTVQ  381 (382)
T ss_dssp             SSEEEETTEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             ceEEEECCEEEECcCCcccCEEEEEEEEeCCCeE-EEEEEEEEe
Confidence             344456799999999999999999999999988 588888875

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.85  E-value=3.5e-21  Score=146.84  Aligned_cols=122  Identities=13%  Similarity=0.149  Sum_probs=95.8

Q ss_pred             eeEEEEEecccceeEEeeccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC
Q psy15738         63 SYILAMEKEEEERKKKKKRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG  142 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~  142 (187)
                      ..|..++.+|+|.|+|.+... .+..+.|.|..+|.+..........+.+|+.+.|.|.+.|.|.|.+.|+++|..+...
T Consensus       292 L~I~~v~~~DsG~Y~C~a~N~-~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~  370 (527)
T 3qs9_E          292 AFVSSVARNDTGYYTCSSSKH-PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE  370 (527)
T ss_dssp             EEESSCCGGGCEEEEEEETTE-EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECB
T ss_pred             EEEccCCcccCeEEEEEEEeC-CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCC
Confidence            337889999999999977766 7888899998888765333333456778999999999999999999999999877443


Q ss_pred             c-EEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        143 E-YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       143 ~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      . .......|.|.++..+|+|.|+|.|.|..|.. +..+.|.|.+
T Consensus       371 ~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~-~~~~~L~V~~  414 (527)
T 3qs9_E          371 QKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQF-TKMFTLNIRR  414 (527)
T ss_dssp             CCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEE-EEEEEEC--C
T ss_pred             cccccCCcEEEEecCCcccCEEEEEEEEeCCCcE-EEEEEEEEec
Confidence            2 12235689999999999999999999999987 5778887754

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.85  E-value=7.4e-21  Score=134.51  Aligned_cols=121  Identities=26%  Similarity=0.428  Sum_probs=93.5

Q ss_pred             eEEEEEecccceeEEeec----cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeC
Q psy15738         64 YILAMEKEEEERKKKKKR----KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNL  139 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~----~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~  139 (187)
                      .|..+...|.|.|+|.+.    .......+.+.|..+|.+.....+....+.+|+.+.|.|.+.|.|.|.+.|++++..+
T Consensus       156 ~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~  235 (291)
T 2wim_A          156 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI  235 (291)
T ss_dssp             EETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEEC
T ss_pred             EEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEEC
Confidence            377888899999999543    2234566788888888764322221345678999999999999999999999999887


Q ss_pred             CCCcE-EE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        140 PGGEY-SY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       140 ~~~~~-~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      ..... ..  ....|.|.++..+|.|.|.|.|.|..|.. +..+.|.|.
T Consensus       236 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v~  283 (291)
T 2wim_A          236 EENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGED-EKQAFLQVF  283 (291)
T ss_dssp             CCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEE-EEEEEEEC-
T ss_pred             cCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCce-eeeEEEEEE
Confidence            65432 22  24689999999999999999999999988 588888775

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.85  E-value=1e-20  Score=127.79  Aligned_cols=121  Identities=16%  Similarity=0.275  Sum_probs=93.5

Q ss_pred             eeEEEEEecccceeEEeecc----ceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeE-eccCCCCcEEEEeCCe
Q psy15738         63 SYILAMEKEEEERKKKKKRK----KRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECK-ADGNPVPNITWTRKNN  137 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~----~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~-~~g~p~p~~~W~~~~~  137 (187)
                      ..|..++.+|.|.|+|....    ...+..+.|.|..+|.+.....+  ..+..|+.+.|.|. +.+.|.|.+.|++++.
T Consensus        67 L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~--~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~  144 (212)
T 1f97_A           67 ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVP--SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGI  144 (212)
T ss_dssp             EEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECC--SEEETTSCEEEEEECSCCBSCCEEEEEETTE
T ss_pred             EEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCc--cccCCCCeEEEEEEcccCcCCCEEEEEeCCc
Confidence            33778889999999995442    25577889999988877544333  45788999999999 7899999999999998


Q ss_pred             -eCCCCcE----------EE--eCcEEEEecCCCCCCeEEEEEEecCCCCc-ceeeEEEEEE
Q psy15738        138 -NLPGGEY----------SY--SGNSLTVRHTNRHSAGIYLCVANNMVGSS-AAASIALHVL  185 (187)
Q Consensus       138 -~~~~~~~----------~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~s~~~~l~v~  185 (187)
                       .+.....          ..  ....|.|.++..+|.|.|.|.|.|..|.. .+..+.|.|.
T Consensus       145 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          145 SMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             ESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             ccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence             7654321          11  25689999999999999999999999987 3567777664

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.85  E-value=1.8e-20  Score=138.14  Aligned_cols=120  Identities=20%  Similarity=0.322  Sum_probs=98.1

Q ss_pred             eeEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCC
Q psy15738         63 SYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLP  140 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~  140 (187)
                      ..|..+..+|.|.|+|.+  ..+..+..+.|.|..+|.+..  .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.
T Consensus       277 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~--~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~  354 (404)
T 3p3y_A          277 LRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLD--EPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQ  354 (404)
T ss_dssp             EEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEE--CCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGG
T ss_pred             EEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeec--cCCcceeecCCcEEEEEEccccCCCceEEEECCEecC
Confidence            347788889999999944  445567788899988887753  3445678899999999999999999999999998875


Q ss_pred             CC----cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        141 GG----EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       141 ~~----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      ..    ......+.|.|.++..+|+|.|.|.|.|..|.. +..+.|.|.
T Consensus       355 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~  402 (404)
T 3p3y_A          355 SAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYL-LANAFVSVL  402 (404)
T ss_dssp             GSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             CCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcE-EEEEEEEEE
Confidence            33    233456789999999999999999999999988 578888774

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.85  E-value=1.7e-20  Score=125.21  Aligned_cols=119  Identities=22%  Similarity=0.336  Sum_probs=90.5

Q ss_pred             eeEEEEEecccceeEEeec--cceeeEEEEEEEE---cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCe
Q psy15738         63 SYILAMEKEEEERKKKKKR--KKRKKKKKKKEKR---IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNN  137 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~  137 (187)
                      ..|..+...|.|.|+|...  .........|.|.   .+|.+.  ..+....+..|+.+.|.|.+.|.|.|.+.|++++.
T Consensus        65 L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~p~~~--~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~  142 (194)
T 2a38_A           65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFV--QRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGA  142 (194)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEEEE--ECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTE
T ss_pred             EEECCCCcccCEEEEEEEEcCCceEeEEEEEEEccCCCCCEEE--eCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCE
Confidence            3367888899999999443  3445556677777   344443  33445678899999999999999999999999998


Q ss_pred             eCCCCcE-EE--eC--cEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        138 NLPGGEY-SY--SG--NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       138 ~~~~~~~-~~--~~--~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      .+..... ..  ..  ..|.|.++..+|.|.|.|.|.|..|.. +..+.|.|
T Consensus       143 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V  193 (194)
T 2a38_A          143 EIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRA-TSTAELLV  193 (194)
T ss_dssp             ECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             ECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCce-EEEEEEEE
Confidence            8765432 21  11  279999999999999999999999987 57777766

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.85  E-value=1.2e-20  Score=127.38  Aligned_cols=131  Identities=21%  Similarity=0.240  Sum_probs=96.8

Q ss_pred             ccEEEeeccccccceeEEEEEecccceeEEeecc---ceeeEEEEEEEEcCCeeE-EecCCceEEEecCCcEEEEeEecc
Q psy15738         49 CSYIILATSLLHYLSYILAMEKEEEERKKKKKRK---KRKKKKKKKEKRIPPRII-YVSGAGKVEVKKGYSVTLECKADG  124 (187)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~---~~~~~~~~l~v~~~p~~~-~~~~~~~~~~~~g~~~~l~C~~~g  124 (187)
                      .++.+..++.    ..|..++.+|.|.|+|....   ......+.|.|..++... .......  +..|+.+.|.|.+.+
T Consensus        63 ~r~~~~~~~~----L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~  136 (208)
T 3r4d_A           63 GREIIYSNGS----LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSND  136 (208)
T ss_dssp             SSEEECTTSC----EEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSC
T ss_pred             ceeEEecCCe----EEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCC
Confidence            4444444333    33889999999999994432   455677788887664321 1222222  788999999999998


Q ss_pred             CCCCcEEEEeCCeeCCCCc-EEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        125 NPVPNITWTRKNNNLPGGE-YSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       125 ~p~p~~~W~~~~~~~~~~~-~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .| |.+.|++++..+.... ...  ....|.|.++...|.|.|.|.|.|..|...+..++|.|..
T Consensus       137 ~p-p~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~  200 (208)
T 3r4d_A          137 IG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF  200 (208)
T ss_dssp             TT-CEEEEEETTEECCCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-
T ss_pred             CC-CceEEEECCEeCCCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEe
Confidence            66 7999999998876443 222  2478999999999999999999999999888898887754

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.84  E-value=1.3e-20  Score=138.96  Aligned_cols=153  Identities=21%  Similarity=0.407  Sum_probs=112.7

Q ss_pred             ceEEccCCCCeeEEEeC-eEee--eccEEEeeccccccceeEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEE
Q psy15738         27 AIMFADSRPESTFWIFG-KLIT--SCSYIILATSLLHYLSYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIY  101 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~~-~~~~--~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~  101 (187)
                      .|.+.+.+.....|+++ ..+.  ...+......    ...|..+..+|.|.|+|.+  ..+..+..+.|.|..+|.+..
T Consensus       242 ~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~  317 (403)
T 3laf_A          242 ECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS----NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLN  317 (403)
T ss_dssp             CCEEEEESCCEEEEEETTEECCCSSSSEEEETTT----EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEE
T ss_pred             EEEcCCCCCCeEEEEECCeeccCCCceEEECCcc----EEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEee
Confidence            35555555567777755 3332  1222222222    2337788999999999944  456667788999988887753


Q ss_pred             ecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-E-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceee
Q psy15738        102 VSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-S-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAAS  179 (187)
Q Consensus       102 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~  179 (187)
                        .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..... . ...+.|.|.++..+|.|.|.|.|.|..|.. +..
T Consensus       318 --~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~  394 (403)
T 3laf_A          318 --HPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNA-QSS  394 (403)
T ss_dssp             --CCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEE-EEE
T ss_pred             --cCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCceE-EEE
Confidence              34456778899999999999999999999999988754432 2 345789999999999999999999999988 578


Q ss_pred             EEEEEEe
Q psy15738        180 IALHVLC  186 (187)
Q Consensus       180 ~~l~v~~  186 (187)
                      +.|.|..
T Consensus       395 ~~l~V~~  401 (403)
T 3laf_A          395 AQLIVPK  401 (403)
T ss_dssp             EEEECCC
T ss_pred             EEEEEeC
Confidence            8887754

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.84  E-value=3.1e-20  Score=136.31  Aligned_cols=113  Identities=17%  Similarity=0.272  Sum_probs=94.4

Q ss_pred             eEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCC
Q psy15738         64 YILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG  141 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~  141 (187)
                      .|..+..+|.|.|+|.+  ..+..+..+.|.|..+|.+...  +....+..|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus       273 ~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~--~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~  350 (388)
T 2v5m_A          273 IIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID--PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH  350 (388)
T ss_dssp             EESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEE--SSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSC
T ss_pred             EECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccC--CCcEEecCCCCEEEEEEeccccCCeEEEEECCEECcc
Confidence            37788889999999944  3455677888999888876533  3456788999999999999999999999999988764


Q ss_pred             CcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        142 GEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       142 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      .     .+.|.|.++..+|.|.|.|.|.|..|.. +..+.|.|
T Consensus       351 ~-----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V  387 (388)
T 2v5m_A          351 S-----ESVLRIESVKKEDKGMYQCFVRNDRESA-EASAELKL  387 (388)
T ss_dssp             C-----SSEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEE
T ss_pred             C-----CCEEEEecCChhhCEEEEEEEEcCCCcE-EEEEEEEe
Confidence            3     4789999999999999999999999988 57888776

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.84  E-value=2.9e-20  Score=136.71  Aligned_cols=151  Identities=21%  Similarity=0.278  Sum_probs=111.9

Q ss_pred             eEEccCCCCeeEEEe-C-eEeeeccEEEeeccccccceeEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEec
Q psy15738         28 IMFADSRPESTFWIF-G-KLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVS  103 (187)
Q Consensus        28 ~~~~~~~~~~~~w~~-~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~  103 (187)
                      |.+.+.+.+...|++ + ..+.. ......   ......|..+..+|.|.|+|.+  ..+.......|.|..+|.+..  
T Consensus       227 C~~~g~P~p~i~W~k~~~~~~~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~--  300 (384)
T 3kld_A          227 CFALGNPVPTILWRRADGKPIAR-KARRHK---SNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQ--  300 (384)
T ss_dssp             EEEEEESCCEEEEEETTCCCCCT-TCEECT---TSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEE--
T ss_pred             EEEeecCCCcEEEEeCCCccccc-cceecC---CCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCcccc--
Confidence            334455566777774 2 22222 111111   1123447889999999999944  445566778899988887753  


Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      .+....+..|+.+.|.|.+.|.|.|.+.|+++|..+... +.....+.|.|.++..+|+|.|.|.|.|..|.. +..+.|
T Consensus       301 ~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L  379 (384)
T 3kld_A          301 IINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVI-FSSAEL  379 (384)
T ss_dssp             CCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEE
T ss_pred             CCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEEEEEEEEeCCceE-EeceEE
Confidence            344567889999999999999999999999999987543 344567899999999999999999999999998 578888


Q ss_pred             EEE
Q psy15738        183 HVL  185 (187)
Q Consensus       183 ~v~  185 (187)
                      .|.
T Consensus       380 ~V~  382 (384)
T 3kld_A          380 SVI  382 (384)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            875

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.84  E-value=1.1e-20  Score=140.58  Aligned_cols=121  Identities=13%  Similarity=0.166  Sum_probs=92.1

Q ss_pred             eEEEEEecccceeEEeeccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc
Q psy15738         64 YILAMEKEEEERKKKKKRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE  143 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~  143 (187)
                      .|..+..+|.|.|+|.+... .+..+.|.|..+|.+..........+.+|+.+.|.|.+.|.|.|.+.|+++|..+....
T Consensus       293 ~I~~v~~~D~G~Y~C~A~N~-~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~  371 (423)
T 3qs7_E          293 FVSSVARNDTGYYTCSSSKH-PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ  371 (423)
T ss_dssp             EESSCCTTTCEEEEEEETTE-EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBC
T ss_pred             EEeecCHHHCEEEEEEEecC-CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCcc
Confidence            37788999999999987777 88899999999888764433345667889999999999999999999999998875432


Q ss_pred             EE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        144 YS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       144 ~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .. .....+........|+|.|+|.|.|..|.. +.++.|.|..
T Consensus       372 ~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~-~~s~~L~v~~  414 (423)
T 3qs7_E          372 KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQF-TKMFTLNIRS  414 (423)
T ss_dssp             CBCSSSSEEEEECCCTTCCSCEEEEEEETTEEE-EEEEEEC---
T ss_pred             ccccCCcEEEEEecccccCEEEEEEEEcCCceE-EEEEEEEEec
Confidence            10 011223336677789999999999999988 6888887754

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.84  E-value=4.6e-19  Score=126.68  Aligned_cols=122  Identities=16%  Similarity=0.290  Sum_probs=91.7

Q ss_pred             eEEEEEecccceeEEeeccceeeE--EEEEEEEc--------------------CCeeEEecCCceEEEecCCcEEEEeE
Q psy15738         64 YILAMEKEEEERKKKKKRKKRKKK--KKKKEKRI--------------------PPRIIYVSGAGKVEVKKGYSVTLECK  121 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~~~~~~~--~~~l~v~~--------------------~p~~~~~~~~~~~~~~~g~~~~l~C~  121 (187)
                      .|..+..+|.|.|+|.+.......  .+.|.|..                    +|.+. ...+....+..|+.+.|.|.
T Consensus       167 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~v~~g~~~~l~C~  245 (317)
T 2y25_A          167 QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL-GGLPDVVTIQEGKALNLTCN  245 (317)
T ss_dssp             EEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEE-EBCCSEEEEETTSBBCEEEE
T ss_pred             EECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCccc-ccCCccEEEEcCCEEEEEEE
Confidence            377888899999999655444333  34443321                    23332 23344567889999999999


Q ss_pred             eccCCCCcEEEEeCCeeCCCCc-EEEeC-----cEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEeC
Q psy15738        122 ADGNPVPNITWTRKNNNLPGGE-YSYSG-----NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK  187 (187)
Q Consensus       122 ~~g~p~p~~~W~~~~~~~~~~~-~~~~~-----~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~~  187 (187)
                      +.|.|.|.+.|++++..+.... .....     ..|.|.++..+|+|.|.|.|.|..|.. +..+.|.|.++
T Consensus       246 ~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~P  316 (317)
T 2y25_A          246 VWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE-TSDFTVSVFIP  316 (317)
T ss_dssp             EECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEE-EEEEEEEEECC
T ss_pred             EecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeE-EEEEEEEEEcC
Confidence            9999999999999998875543 23222     289999999999999999999999988 68999998764

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.84  E-value=2.3e-19  Score=119.79  Aligned_cols=159  Identities=18%  Similarity=0.181  Sum_probs=111.1

Q ss_pred             ceEEccCCCCeeEEEeC-eEee-eccEEEeeccccccceeEEEEEecccceeEEeec--cceeeEEEEEEEEcCCeeEEe
Q psy15738         27 AIMFADSRPESTFWIFG-KLIT-SCSYIILATSLLHYLSYILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIPPRIIYV  102 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~~-~~~~-~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~p~~~~~  102 (187)
                      .|.+.+.......|+++ ..+. ..++.+...+ ......|..+..+|.|.|+|.+.  .......+.|.|..+|.+...
T Consensus        28 ~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~p~~~~~  106 (197)
T 3lcy_A           28 SCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDG-RTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPG  106 (197)
T ss_dssp             EEEEEEESCCEEEEEETTEEECCCSSEEEEESS-SEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECTT
T ss_pred             EEEEecCCCCEEEEEECCEECCCCccEEEEeCC-CEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEEEEcCCCCCCC
Confidence            34444444556666644 4333 2333333322 12234478889999999999543  445566778888777665321


Q ss_pred             -cCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-EEe----CcEEEEecCCC-CCCeEEEEEEecCCCCc
Q psy15738        103 -SGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-SYS----GNSLTVRHTNR-HSAGIYLCVANNMVGSS  175 (187)
Q Consensus       103 -~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~~----~~~l~i~~~~~-~d~g~y~C~~~n~~g~~  175 (187)
                       ..+....+..|+.+.|.|.+.|.|.|.+.|++++..+..... ...    ...|.|.++.. +|.|.|.|.|.|..|..
T Consensus       107 ~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~  186 (197)
T 3lcy_A          107 YPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV  186 (197)
T ss_dssp             SCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEE
T ss_pred             ccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCce
Confidence             123355678899999999999999999999999988865432 221    15799999985 79999999999999988


Q ss_pred             ceeeEEEEEEeC
Q psy15738        176 AAASIALHVLCK  187 (187)
Q Consensus       176 ~s~~~~l~v~~~  187 (187)
                       +..+.|.|..|
T Consensus       187 -~~~~~l~V~~k  197 (197)
T 3lcy_A          187 -DAILDVEIQDK  197 (197)
T ss_dssp             -EEEEEEEEECC
T ss_pred             -EEEEEEEEecC
Confidence             68888888764

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.83  E-value=6.4e-20  Score=123.97  Aligned_cols=120  Identities=25%  Similarity=0.382  Sum_probs=90.9

Q ss_pred             EEEEecccceeEEeeccce---eeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEe-ccCCCCcEEEEeCCeeCCC
Q psy15738         66 LAMEKEEEERKKKKKRKKR---KKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKA-DGNPVPNITWTRKNNNLPG  141 (187)
Q Consensus        66 ~~v~~~d~g~y~c~~~~~~---~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~  141 (187)
                      ..+...|.|.|+|.+....   .+..+.|.|...+... ...+....+..|+.+.|.|.+ .|.|.|.+.|++++..+..
T Consensus        77 ~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~  155 (212)
T 2v9r_A           77 GRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDF-RQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDD  155 (212)
T ss_dssp             CSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSC-SBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECT
T ss_pred             cCCCcccCeEEEEEEECCCCceeecceEEEEEeccccc-eeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCC
Confidence            4567889999999554322   2446777776533221 223345678899999999998 8999999999999988754


Q ss_pred             C--cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        142 G--EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       142 ~--~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .  ......+.|.|.++..+|.|.|.|.|.|..|...+..+.|.|..
T Consensus       156 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~  202 (212)
T 2v9r_A          156 KDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE  202 (212)
T ss_dssp             TSTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CcceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEe
Confidence            3  34456689999999999999999999999998655568888864

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.83  E-value=1.8e-19  Score=118.71  Aligned_cols=118  Identities=13%  Similarity=0.147  Sum_probs=93.2

Q ss_pred             eeEEEEEecccceeEEeeccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEec-cCCCCcEEEEeCCeeCCC
Q psy15738         63 SYILAMEKEEEERKKKKKRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKAD-GNPVPNITWTRKNNNLPG  141 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~  141 (187)
                      ..|..++.+|.|.|+|.......+..+.|.|..++......   ...+.+|+.+.|.|.+. +.|.+.+.|++++..+..
T Consensus        53 L~i~~v~~~d~G~Y~C~~~~~~~s~~~~l~V~~~~~~~~~~---~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~  129 (176)
T 1f2q_A           53 LNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQAS---AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY  129 (176)
T ss_dssp             EEECSCCGGGCEEEEEECTTSSCCCCEEEEEECSSEEEEES---CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCS
T ss_pred             EEEeccceecCEEEEEEcCCccccccEEEEEeCcceeecCC---cceeeCCCCEEEEEEecCCCCceEEEEEECCEEEee
Confidence            33778999999999998777777788899998655543222   24677999999999995 566679999999987743


Q ss_pred             CcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        142 GEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       142 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      ..   ....|.|.++..+|+|.|.|.|.|..+...+..+.|.|..
T Consensus       130 ~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  171 (176)
T 1f2q_A          130 WY---ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIK  171 (176)
T ss_dssp             CC---CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ec---CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEec
Confidence            21   3578999999999999999999997665556778888865

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.83  E-value=2.3e-20  Score=123.22  Aligned_cols=144  Identities=13%  Similarity=0.048  Sum_probs=96.6

Q ss_pred             CCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec--
Q psy15738          4 DSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR--   81 (187)
Q Consensus         4 ~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~--   81 (187)
                      .|.|.|.|+++|..|.....+.  ..+               ....++.+..++.+.    |..++.+|+|.|+|.+.  
T Consensus        25 ~~~~~i~W~k~~~~i~~~~~~~--~~~---------------~~~~r~~~~~~gsL~----I~~v~~~D~G~Y~C~~~n~   83 (176)
T 1hng_A           25 DDIDEVRWERGSTLVAEFKRKM--KPF---------------LKSGAFEILANGDLK----IKNLTRDDSGTYNVTVYST   83 (176)
T ss_dssp             TTEEEEEEEETTEEEEEEETTS--CCE---------------ESSTTEEECTTSCEE----ESSCCGGGCEEEEEEEEET
T ss_pred             cccccEEEEeCCceeEEEcCCC--eec---------------CCCCeEEECCCCcEE----EcccccccCEEEEEEEEeC
Confidence            5677899999988665322211  001               112455554444443    88999999999999443  


Q ss_pred             cce--eeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCC
Q psy15738         82 KKR--KKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRH  159 (187)
Q Consensus        82 ~~~--~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~  159 (187)
                      .+.  .+..+.|.|..++..     +  .....+..+.|.|.+.|.|+|.+.|++++..+...      ..+.+.++..+
T Consensus        84 ~g~~~~~~~~~l~V~~~~~~-----p--~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~------~~~~i~~~~~~  150 (176)
T 1hng_A           84 NGTRILNKALDLRILEMVSK-----P--MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL------RQKTMSYQWTN  150 (176)
T ss_dssp             TCCEEEEEEEEEEEECCCCC-----C--EEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEE------SSSEEEEECSC
T ss_pred             CCCEEEEEEEEEEEeCCCCC-----C--EEEecCCcEEEEEEecCCCCcEEEEEECCEECCCC------CcEEEEEEEcc
Confidence            333  356678888764321     1  11223456899999999999999999999765322      22456678899


Q ss_pred             CCeEEEEEEecCCCCcceeeEEE
Q psy15738        160 SAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       160 d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      |.|.|.|.|.|..|.. +..+.|
T Consensus       151 d~G~Y~C~a~N~~g~~-~~~~~l  172 (176)
T 1hng_A          151 LRAPFKCKAVNRVSQE-SEMEVV  172 (176)
T ss_dssp             CSSCEEEEEEETTEEE-EEEECC
T ss_pred             CCeEEEEEEEecCCCc-eecccc
Confidence            9999999999999977 355444

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.83  E-value=9.7e-20  Score=133.90  Aligned_cols=121  Identities=30%  Similarity=0.396  Sum_probs=84.3

Q ss_pred             eeEEEEEecccceeEEeeccceee-----EEEEEEEE-------cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcE
Q psy15738         63 SYILAMEKEEEERKKKKKRKKRKK-----KKKKKEKR-------IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNI  130 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~~~-----~~~~l~v~-------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~  130 (187)
                      .+|..++.+|.|.|+|.+......     ....+.+.       .+|.+. ...+....+.+|+.+.|.|.+.|.|.|.+
T Consensus       159 L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~-~~~~~~~~~~~G~~v~l~C~~~g~P~p~i  237 (384)
T 3kld_A          159 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIE-VQFPETVPAEKGTTVKLECFALGNPVPTI  237 (384)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEE-EECCSEEEEETTSCEEEEEEEEEESCCEE
T ss_pred             EEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCcee-ecCCCceEecCCCcEEEEEEEeecCCCcE
Confidence            446778889999999955432111     11122221       223332 22344567889999999999999999999


Q ss_pred             EEEeCC-eeCCCCcEE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        131 TWTRKN-NNLPGGEYS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       131 ~W~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      .|++++ ..+...... ...+.|.|.++..+|+|.|.|.|.|..|.. .....|.|.
T Consensus       238 ~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~v~  293 (384)
T 3kld_A          238 LWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKN-VAKGQLTFY  293 (384)
T ss_dssp             EEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeE-EEEEEEEEe
Confidence            999954 344433222 235689999999999999999999999987 466777664

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.83  E-value=2.8e-19  Score=117.72  Aligned_cols=119  Identities=10%  Similarity=0.139  Sum_probs=94.8

Q ss_pred             eeEEEEEecccceeEEeeccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCC-cEEEEeCCeeCCC
Q psy15738         63 SYILAMEKEEEERKKKKKRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP-NITWTRKNNNLPG  141 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~  141 (187)
                      ..|..++.+|.|.|+|.......+..+.|.|..++.....  + ...+.+|+.+.|.|.+.+.|++ .+.|++++..+..
T Consensus        56 L~i~~~~~~d~G~Y~C~~~n~~~s~~~~l~V~~~~~~~~~--~-~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~  132 (175)
T 1fnl_A           56 YFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQA--P-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY  132 (175)
T ss_dssp             EEESSCCGGGCEEEEEECSSSCCCCCEEEEEECSSEEEEC--S-CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE
T ss_pred             EEEeCCCcccCEEEEEEeeCCcccccEEEEEeCCCceeeC--C-CceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC
Confidence            3377889999999999777766778889999866654322  2 2467899999999999988665 9999999986632


Q ss_pred             CcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEeC
Q psy15738        142 GEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK  187 (187)
Q Consensus       142 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~~  187 (187)
                         ......|.|.++..+|.|.|.|.|.|..+...+..+.|.|..+
T Consensus       133 ---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~  175 (175)
T 1fnl_A          133 ---FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQA  175 (175)
T ss_dssp             ---EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC
T ss_pred             ---CCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeCC
Confidence               2246789999999999999999999987766678888888754

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.83  E-value=1.6e-19  Score=124.36  Aligned_cols=123  Identities=15%  Similarity=0.213  Sum_probs=90.5

Q ss_pred             eeEEEEEecccceeEEeec--cceeeEEEEEEEEcCCe---eEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEe---
Q psy15738         63 SYILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIPPR---IIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTR---  134 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~p~---~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~---  134 (187)
                      ..|..++..|.|.|+|...  .......+.|.|...+.   ......+....+..|+.+.|.|.+.|.|.|.+.|++   
T Consensus        74 L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~  153 (241)
T 3grw_A           74 LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVE  153 (241)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECC
T ss_pred             EEEEeCCcccCEEEEEEEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEccc
Confidence            4477888999999999443  34556667788765321   222333445677889999999999999999999999   


Q ss_pred             -CCeeCCCCcE--E-----------EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        135 -KNNNLPGGEY--S-----------YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       135 -~~~~~~~~~~--~-----------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                       ++..+.....  .           .....|.|.++..+|.|.|.|.|.|..|.. +..+.|.|..
T Consensus       154 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~  218 (241)
T 3grw_A          154 VNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVA-EKAFWLSVHG  218 (241)
T ss_dssp             SSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEC--
T ss_pred             CCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceE-EEEEEEEecC
Confidence             7766543311  1           023579999999999999999999999988 5788887754

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.83  E-value=1.6e-21  Score=139.23  Aligned_cols=121  Identities=17%  Similarity=0.278  Sum_probs=90.2

Q ss_pred             EEEEEecccceeEEeecc----ceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCC-cEEEEeCCeeC
Q psy15738         65 ILAMEKEEEERKKKKKRK----KRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP-NITWTRKNNNL  139 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~----~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~  139 (187)
                      +..+...|.|.|+|.+..    ...+..+.|.|..+|.+.... .....+..|+.+.|.|.+.|.|+| .+.|++++..+
T Consensus       176 i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~-~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~  254 (308)
T 4fom_A          176 LFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTG-YDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQW  254 (308)
T ss_dssp             ECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBC-CCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCC
T ss_pred             EEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcc-cceeeeeccccEEEEEEEecCCCCcEEEEEECCeEC
Confidence            556677899999995542    233456677787777765322 223456678999999999999988 69999999877


Q ss_pred             CCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEeC
Q psy15738        140 PGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK  187 (187)
Q Consensus       140 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~~  187 (187)
                      ........+..|.|.+++.+|+|.|.|.|.|..|.. +..+.|.|..+
T Consensus       255 ~~~~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~-~~~~~l~V~~~  301 (308)
T 4fom_A          255 PDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQR-SDQKVIYISDP  301 (308)
T ss_dssp             CSSCBCSTTEEECCSCCCSCCCSEEEEEEEETTEEE-EEEEECCEECC
T ss_pred             CCcEEEcCCeEEEECCCChhhCEEEEEEEEeCCCcE-EEEEEEEEEcC
Confidence            655333233456678899999999999999999988 68888888653

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.83  E-value=1.1e-18  Score=135.81  Aligned_cols=117  Identities=13%  Similarity=0.254  Sum_probs=93.3

Q ss_pred             ceeEEEEEecccceeEEeeccc---eeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCee
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK---RKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNN  138 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~---~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~  138 (187)
                      ...|..+...|.|.|+|.+...   ..+..+.|.|..+|..... .+....+..|+.+.|.|.+.|.|+|.+.|+++|..
T Consensus       521 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~-~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~  599 (642)
T 1e07_A          521 TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPII-SPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIP  599 (642)
T ss_pred             EEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCccee-cCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEE
Confidence            3447888999999999955432   2344688999876653322 23456788999999999999999999999999987


Q ss_pred             CCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        139 LPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       139 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      +..      ...|.|.++...|.|.|.|.|.|..|.. +.++.|.|.+
T Consensus       600 i~~------~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~s~~l~V~v  640 (642)
T 1e07_A          600 QQH------TQVLFIAKITPNNNGTYACFVSNLATGR-NNSIVKSITV  640 (642)
T ss_pred             Ccc------CceEEECcccccCCeEEEEEEEecccCc-ceeEEEEEEE
Confidence            654      3579999999999999999999999998 5788887765

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.83  E-value=1.3e-19  Score=125.38  Aligned_cols=122  Identities=17%  Similarity=0.175  Sum_probs=88.2

Q ss_pred             ceeEEEEEecccceeEEeeccce-------eeEEEEEEEEcC--CeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKKR-------KKKKKKKEKRIP--PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITW  132 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~~-------~~~~~~l~v~~~--p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W  132 (187)
                      .+.|..++.+|.|.|+|......       .+..+.|.|..+  |.......+....+.+|+.+.|.|.+.|.|.|.+.|
T Consensus        91 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W  170 (250)
T 2fbo_J           91 TLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTW  170 (250)
T ss_dssp             CEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEEEE
T ss_pred             eEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCeeEE
Confidence            34588999999999999554322       245788888865  222223344456677899999999999999999999


Q ss_pred             EeCCeeCCCC-------------------------cEEE-eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        133 TRKNNNLPGG-------------------------EYSY-SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       133 ~~~~~~~~~~-------------------------~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      ++++..+...                         .... ....|.|.++..+|+|.|.|.|.|..|...+....+.
T Consensus       171 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~  247 (250)
T 2fbo_J          171 YTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI  247 (250)
T ss_dssp             EEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEE
T ss_pred             EeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeEE
Confidence            9998766431                         1111 2368999999999999999999997775543333333

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.82  E-value=6.2e-19  Score=126.06  Aligned_cols=120  Identities=18%  Similarity=0.239  Sum_probs=86.8

Q ss_pred             EEEEEecccceeEEeec---ccee---eEEEEEEEE-----cCCeeEEecCCc-eEEEecCCcEEEEeEeccCCCCcEEE
Q psy15738         65 ILAMEKEEEERKKKKKR---KKRK---KKKKKKEKR-----IPPRIIYVSGAG-KVEVKKGYSVTLECKADGNPVPNITW  132 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~---~~~~---~~~~~l~v~-----~~p~~~~~~~~~-~~~~~~g~~~~l~C~~~g~p~p~~~W  132 (187)
                      |..+..+|.|.|+|.+.   .+..   +..+.|.+.     .+|.+.  ..+. ...+..|+.+.|.|.+.|.|.|.+.|
T Consensus       166 i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~--~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W  243 (315)
T 1itb_B          166 VMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIV--SPANETMEVDLGSQIQLICNVTGQLSDIAYW  243 (315)
T ss_dssp             ESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEEC--SCCSEEEECCSSSCEEEEEEEEECTTSEEEE
T ss_pred             EEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEe--cCCCCcEEEeCCCcEEEEEEEecCCCCeeEE
Confidence            66677778888888443   2222   234444443     455553  2222 35678899999999999999999999


Q ss_pred             EeCCeeCCCCc------EE-E----------eCcEEEEecCCCCC-CeEEEEEEecCCCCcceeeEEEEEEeC
Q psy15738        133 TRKNNNLPGGE------YS-Y----------SGNSLTVRHTNRHS-AGIYLCVANNMVGSSAAASIALHVLCK  187 (187)
Q Consensus       133 ~~~~~~~~~~~------~~-~----------~~~~l~i~~~~~~d-~g~y~C~~~n~~g~~~s~~~~l~v~~~  187 (187)
                      +++|..+....      +. .          ....|.|.++..+| +|.|.|.|.|..|.. +..+.|.|..+
T Consensus       244 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~-~~~~~l~v~~~  315 (315)
T 1itb_B          244 KWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGID-AAYIQLIYPVT  315 (315)
T ss_dssp             EETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCE-EEEEEEECCCC
T ss_pred             EECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCce-eEEEEEEecCC
Confidence            99998876532      11 1          12389999999999 999999999999998 58888877543

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.82  E-value=1.1e-20  Score=127.43  Aligned_cols=119  Identities=18%  Similarity=0.291  Sum_probs=91.8

Q ss_pred             EEEEEecccceeEEeec----cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEe-ccCCCCcEEEEeCCeeC
Q psy15738         65 ILAMEKEEEERKKKKKR----KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKA-DGNPVPNITWTRKNNNL  139 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~----~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~  139 (187)
                      |..++.+|.|.|+|...    ....+..+.|.|..+|.+...  .....+..|+.+.|.|.+ .+.|.|.+.|++++..+
T Consensus        72 i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~  149 (209)
T 1nbq_A           72 FKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTV--NIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVM  149 (209)
T ss_dssp             CSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCC--CCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCC
T ss_pred             EeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCc--ccccceecCCEEEEEEeCCCCCCCceeEEEECCeeC
Confidence            67888999999999544    335567788999988876433  223457889999999997 89999999999999876


Q ss_pred             CCCcE----------EE--eCcEEEEecCCCCCCeEEEEEEecCCCCc-ceeeEEEEEE
Q psy15738        140 PGGEY----------SY--SGNSLTVRHTNRHSAGIYLCVANNMVGSS-AAASIALHVL  185 (187)
Q Consensus       140 ~~~~~----------~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~s~~~~l~v~  185 (187)
                      .....          ..  ....|.|.++..+|.|.|.|.|.|..|.. .+..+.|.|.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~  208 (209)
T 1nbq_A          150 PTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV  208 (209)
T ss_dssp             CSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             CCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence            54321          11  34689999999999999999999999988 3455566553

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.82  E-value=8e-19  Score=118.41  Aligned_cols=118  Identities=10%  Similarity=0.139  Sum_probs=94.0

Q ss_pred             eeEEEEEecccceeEEeeccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccC-CCCcEEEEeCCeeCCC
Q psy15738         63 SYILAMEKEEEERKKKKKRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGN-PVPNITWTRKNNNLPG  141 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p~~~W~~~~~~~~~  141 (187)
                      ..|..++.+|+|.|+|.+.....+..+.|.|..+|.+....  . ..+.+|+.+.|.|.+.+. |.+.+.|++++..+..
T Consensus        56 L~i~~v~~~D~G~Y~C~a~n~~~s~~~~l~V~~~p~~~~~~--~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~  132 (204)
T 3sgj_C           56 YFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAP--R-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY  132 (204)
T ss_dssp             EEESSCCGGGCEEEEEEETTSBCCCCEEEEEECSSEEEECS--C-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE
T ss_pred             EEEecccccCCEEEEEEeCCCcccccEEEEEecCceEecCC--c-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec
Confidence            33778899999999998887778888999999888664322  2 567889999999999766 5578999999986532


Q ss_pred             CcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        142 GEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       142 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                         ......|.|.++..+|+|.|.|.|.|..+...+..+.|.|..
T Consensus       133 ---~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (204)
T 3sgj_C          133 ---FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQ  174 (204)
T ss_dssp             ---EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ---ccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeC
Confidence               224578999999999999999999996554447788887753

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.82  E-value=5.4e-18  Score=119.43  Aligned_cols=157  Identities=19%  Similarity=0.256  Sum_probs=110.6

Q ss_pred             ceEEccCCCCeeEEEeC-eEeee-ccEEEeeccccccceeEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEe
Q psy15738         27 AIMFADSRPESTFWIFG-KLITS-CSYIILATSLLHYLSYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYV  102 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~~-~~~~~-~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~  102 (187)
                      .|.+.+.+.....|+++ ..+.. .++.+.... ......|..+...|.|.|+|.+  ..+..+..+.|.|..+|.+.. 
T Consensus        26 ~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~-  103 (284)
T 2rik_A           26 KCHVTGTAPIKITWAKDNREIRPGGNYKMTLVE-NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIK-  103 (284)
T ss_dssp             EEEEESSSCCEEEEEETTEECCSSSSEEEEEET-TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEE-
T ss_pred             EEEEEcCCCCEEEEEECCEECcCCCcEEEEEcC-CEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccCCCcccc-
Confidence            34444445556666644 33332 222222111 1233447788899999999944  345567788999999998753 


Q ss_pred             cCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-EE----eCcEEEEecCCCCCCeEEEEEEecCCCCcce
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-SY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAA  177 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s  177 (187)
                      .......+.+|+.+.|.|.+.|.|.+.+.|++++..+..... ..    ....|.|.++...|.|.|.|.+.|..|.. +
T Consensus       104 ~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~  182 (284)
T 2rik_A          104 KLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA-S  182 (284)
T ss_dssp             CCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE-E
T ss_pred             cCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCce-e
Confidence            233345688999999999999999999999999988765432 11    23579999999999999999999999877 5


Q ss_pred             eeEEEEEEe
Q psy15738        178 ASIALHVLC  186 (187)
Q Consensus       178 ~~~~l~v~~  186 (187)
                      ..+.|.|..
T Consensus       183 ~~~~l~V~~  191 (284)
T 2rik_A          183 SSTSLKVKE  191 (284)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEec
Confidence            788887754

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.82  E-value=1.5e-19  Score=122.77  Aligned_cols=118  Identities=19%  Similarity=0.332  Sum_probs=86.3

Q ss_pred             EEEEEecccceeEEeeccce---eeEEEEEEEEc-CCeeEEecCCceEEEecCCcEEEEeEe-ccCCCCcEEEEeCCeeC
Q psy15738         65 ILAMEKEEEERKKKKKRKKR---KKKKKKKEKRI-PPRIIYVSGAGKVEVKKGYSVTLECKA-DGNPVPNITWTRKNNNL  139 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~~---~~~~~~l~v~~-~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~  139 (187)
                      |..++..|.|.|+|......   .+..+.|.|.. +|.+.  ..+....+..|+.+.|.|.+ .|.|.|.+.|++++..+
T Consensus        73 i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~--~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~  150 (217)
T 2vr9_A           73 MQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFR--VEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPL  150 (217)
T ss_dssp             CBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCS--BCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEE
T ss_pred             eccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcE--ECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCC
Confidence            55678899999999554322   23356677664 44442  23345678899999999999 89999999999999876


Q ss_pred             CCC---------cE-EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        140 PGG---------EY-SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       140 ~~~---------~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      ...         +. ....+.|.|.++..+|.|.|.|.|.|..|...+....|.+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          151 DDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV  205 (217)
T ss_dssp             CCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence            521         11 1245689999999999999999999999988544444443

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.82  E-value=2.4e-19  Score=122.60  Aligned_cols=123  Identities=16%  Similarity=0.233  Sum_probs=91.9

Q ss_pred             eeEEEEEecccceeEEee--ccceeeEEEEEEEEcCCe---eEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEe---
Q psy15738         63 SYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPR---IIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTR---  134 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~---~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~---  134 (187)
                      ..|..++.+|.|.|+|..  ........+.|.|..++.   ......+....+..|+.+.|.|.+.|.|.|.+.|++   
T Consensus        78 L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~  157 (231)
T 3ojm_B           78 LIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE  157 (231)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECC
T ss_pred             EEEecCCcccCEEEEEEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCC
Confidence            447788899999999944  344556677888875432   111222345678899999999999999999999999   


Q ss_pred             -CCeeCCCCcE--E--E--------eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        135 -KNNNLPGGEY--S--Y--------SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       135 -~~~~~~~~~~--~--~--------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                       ++..+.....  .  .        ....|.|.++...|.|.|.|.|.|..|.. +..+.|.|..
T Consensus       158 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~  221 (231)
T 3ojm_B          158 KNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA-NQSAWLTVLP  221 (231)
T ss_dssp             BTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             CCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceE-eeEEEEEEec
Confidence             6665533211  0  0        23579999999999999999999999988 6888888864

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.82  E-value=5.1e-19  Score=125.92  Aligned_cols=158  Identities=21%  Similarity=0.290  Sum_probs=107.4

Q ss_pred             ceEEccCCCCeeEEEeC-eEeee--ccEEEeeccccccceeEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEE
Q psy15738         27 AIMFADSRPESTFWIFG-KLITS--CSYIILATSLLHYLSYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIY  101 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~~-~~~~~--~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~  101 (187)
                      .|.+.+.+.....|+++ ..+..  .++.+...........|..++.+|.|.|+|.+  ..+..+..+.|.|..+|.+..
T Consensus        25 ~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~  104 (305)
T 2nzi_A           25 VCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHL  104 (305)
T ss_dssp             EEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEECEEEEECC
T ss_pred             EEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccceEEEEEecCCccCC
Confidence            34444444455666543 33332  22322221111223447788999999999944  445567778888887766532


Q ss_pred             ec---CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE----eCcEEEEec-CCCCCCeEEEEEEecCC
Q psy15738        102 VS---GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY----SGNSLTVRH-TNRHSAGIYLCVANNMV  172 (187)
Q Consensus       102 ~~---~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~----~~~~l~i~~-~~~~d~g~y~C~~~n~~  172 (187)
                      ..   .+....+..|+.+.|.|.+.|.|.|.+.|++++..+.... ...    ....|.+.+ +...|.|.|.|.|.|..
T Consensus       105 ~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~  184 (305)
T 2nzi_A          105 PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF  184 (305)
T ss_dssp             CHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETT
T ss_pred             CccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCC
Confidence            11   1234567889999999999999999999999998775442 221    235788998 99999999999999999


Q ss_pred             CCcceeeEEEEEE
Q psy15738        173 GSSAAASIALHVL  185 (187)
Q Consensus       173 g~~~s~~~~l~v~  185 (187)
                      |.. +..+.|.|.
T Consensus       185 G~~-~~~~~l~v~  196 (305)
T 2nzi_A          185 GID-QKTVELDVA  196 (305)
T ss_dssp             EEE-EEEEEEEEE
T ss_pred             Cce-eeEEEEEEe
Confidence            987 577777765

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.81  E-value=1.2e-18  Score=127.95  Aligned_cols=120  Identities=21%  Similarity=0.315  Sum_probs=94.5

Q ss_pred             ceeEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeC
Q psy15738         62 LSYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNL  139 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~  139 (187)
                      ...|..+..+|.|.|+|.+  ..+..+..+.|.|..+|.+.  ..+....+..|+.+.|.|.+.|.|.+.+.|++++..+
T Consensus        64 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~--~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l  141 (389)
T 2jll_A           64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFI--SNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVL  141 (389)
T ss_dssp             EEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEC--CSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEES
T ss_pred             eEEEcccChhhCEEEEEEEEeCCCCcceEEEEEEEeCCEEe--cCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccC
Confidence            3448889999999999954  34566788899999888874  2333446788999999999999999999999999887


Q ss_pred             CCCc---EEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        140 PGGE---YSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       140 ~~~~---~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      ....   ...    ....|.|.++...|.|.|.|.|.|..|.. +..+.|.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v  192 (389)
T 2jll_A          142 PAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTR-FQEYILAL  192 (389)
T ss_dssp             SCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             CcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcE-EEEEEEEe
Confidence            6542   221    13479999999999999999999999987 45665554

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.81  E-value=8.4e-19  Score=114.71  Aligned_cols=142  Identities=15%  Similarity=0.225  Sum_probs=103.6

Q ss_pred             ceEEccCC-CCeeEEEeC-eEeeeccEEEeeccccccceeEEEEEecccceeEEeeccceeeEEEEEEEEcCCeeEEecC
Q psy15738         27 AIMFADSR-PESTFWIFG-KLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRKKRKKKKKKKEKRIPPRIIYVSG  104 (187)
Q Consensus        27 ~~~~~~~~-~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~~~p~~~~~~~  104 (187)
                      .|.+.... .....|+++ ..+...          ....++..++.+|.|.|+|.......+..+.|.|..++.....  
T Consensus        25 ~C~~~~~p~~~~~~W~~~g~~~~~~----------~~~~~~~~~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~~~~~~--   92 (170)
T 3ry4_A           25 TCQGARSPESDSIQWFHNGNLIPTH----------TQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQT--   92 (170)
T ss_dssp             EEESCCCSSSSCEEEEETTEECTTC----------CSSEEEEECCGGGCEEEEEEETTSBCCCCEEEEEECCSEEEEC--
T ss_pred             EEEecCCCCcceEEEEECCeEcccC----------ccceEEEecccccCeEEEEEEeCCCceEeEEEEEECCceEecC--
Confidence            34444443 446677644 433321          2233477899999999999887777778899999987755422  


Q ss_pred             CceEEEecCCcEEEEeEec-cCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        105 AGKVEVKKGYSVTLECKAD-GNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      + ...+.+|+.+.|.|.+. +.|.+.+.|++++..+..   ......|.|.++..+|.|.|.|.|.|..|...+..+.|.
T Consensus        93 ~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~  168 (170)
T 3ry4_A           93 P-HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF---SHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTIT  168 (170)
T ss_dssp             S-CSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE---ESSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             C-CceeecCCeEEEEEECCCCCCCceEEEEECCeEccc---cCCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEE
Confidence            2 34678899999999995 456689999999976532   113578999999999999999999999987556777776


Q ss_pred             E
Q psy15738        184 V  184 (187)
Q Consensus       184 v  184 (187)
                      |
T Consensus       169 V  169 (170)
T 3ry4_A          169 V  169 (170)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.81  E-value=1.2e-18  Score=118.66  Aligned_cols=144  Identities=14%  Similarity=0.138  Sum_probs=103.3

Q ss_pred             ceEEccCCCCeeEEEeC-eEeeeccEEEeeccccccceeEEEEEecccceeEEeeccc---eeeEEEEEEEEcC------
Q psy15738         27 AIMFADSRPESTFWIFG-KLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRKK---RKKKKKKKEKRIP------   96 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~~---~~~~~~~l~v~~~------   96 (187)
                      .|.+.+.......|+++ ..+...         ......|..+...|.|.|+|.....   ..+..+.|.|...      
T Consensus        39 ~C~~~~~p~~~v~W~~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~  109 (218)
T 3k0w_A           39 CCRATGHPFVQYQWFKMNKEIPNG---------NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQR  109 (218)
T ss_dssp             ECEETTTTSSEEEEEETTEECTTC---------CSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCT
T ss_pred             EeeecCCCCCEEEEEECCEECCCC---------CCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCccccc
Confidence            34444555556666644 332211         1122336678888999999954432   2355678888765      


Q ss_pred             ---------CeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEE
Q psy15738         97 ---------PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCV  167 (187)
Q Consensus        97 ---------p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  167 (187)
                               |.+  ...+....+..|+.+.|.|.+.|.|.|.+.|++++..+...    ....|.|.++...|.|.|.|.
T Consensus       110 ~~~~~~~~~p~~--~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~  183 (218)
T 3k0w_A          110 SVDGVSESKLQI--CVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE----TKKLYMVPYVDLEHQGTYWCH  183 (218)
T ss_dssp             TCCSBCCSSCEE--EECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTC----CSSEEEESSCCGGGCEEEEEE
T ss_pred             ccccccCCCceE--EECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCC----CCCEEEEeecChhcCEEEEEE
Confidence                     333  23344567889999999999999999999999999887654    246899999999999999999


Q ss_pred             EecCCCCcceeeEEEEEE
Q psy15738        168 ANNMVGSSAAASIALHVL  185 (187)
Q Consensus       168 ~~n~~g~~~s~~~~l~v~  185 (187)
                      |.|..|...+..+.|.|.
T Consensus       184 a~n~~g~~~s~~~~l~V~  201 (218)
T 3k0w_A          184 VYNDRDSQDSKKVEIIID  201 (218)
T ss_dssp             EECSSCEEECCCEEEEEC
T ss_pred             EEcCCCCceeeeEEEEEe
Confidence            999998866778877763

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.81  E-value=2.1e-19  Score=129.29  Aligned_cols=119  Identities=22%  Similarity=0.351  Sum_probs=94.9

Q ss_pred             EEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCc-EEEEeCCeeCCC
Q psy15738         65 ILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPN-ITWTRKNNNLPG  141 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~~~  141 (187)
                      +..+...|.|.|+|.+  .....+..+.|.|..+|.+.... .....+..|+.+.|.|.+.|.|.|. +.|++++..+..
T Consensus       198 i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~  276 (331)
T 3u83_A          198 LVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEG-FDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPK  276 (331)
T ss_dssp             ECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEEC-CCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCT
T ss_pred             EEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEec-CCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccc
Confidence            3344778999999944  34556678888898888765333 2334567899999999999999998 999999988765


Q ss_pred             CcEEEeCcEEEEe-cCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        142 GEYSYSGNSLTVR-HTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       142 ~~~~~~~~~l~i~-~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      . .....+.|.|. ++..+|.|.|.|.|.|..|.. +..+.|.|..
T Consensus       277 ~-~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~  320 (331)
T 3u83_A          277 G-VEAQNRTLFFKGPINYSLAGTYICEATNPIGTR-SGQVEVNITE  320 (331)
T ss_dssp             T-EEEETTEEEECSCCCGGGCEEEEEEEEETTEEE-EEEEEECCBC
T ss_pred             c-ceecCcEEEEeCCCccccCeEEEEEEEeccccc-eEEEEEEEec
Confidence            5 33466889999 899999999999999999988 6888887754

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.81  E-value=1.5e-18  Score=125.00  Aligned_cols=118  Identities=15%  Similarity=0.127  Sum_probs=87.3

Q ss_pred             EEEEEecccceeEEeeccc----e----eeEEEEEEEEcCCee--EEecCCceEEEecCCcEEEEeEeccCC---CC-cE
Q psy15738         65 ILAMEKEEEERKKKKKRKK----R----KKKKKKKEKRIPPRI--IYVSGAGKVEVKKGYSVTLECKADGNP---VP-NI  130 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~----~----~~~~~~l~v~~~p~~--~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p-~~  130 (187)
                      |..+..+|.|.|+|.+...    .    .+..+.|.|..+|..  ... .+....+..|+.+.|.|.+.|.|   +| .+
T Consensus       186 I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v  264 (329)
T 3oq3_B          186 IHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTAVSTSLLVDDVLI  264 (329)
T ss_dssp             ECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEE
T ss_pred             EeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEE
Confidence            7788888999999955421    1    223477888877632  112 45567788999999999999998   67 78


Q ss_pred             EEEeCCeeC-CCCcE--EE-------eCcEEEEecCCCCCCe-EEEEEEecCCCCcceeeEEEEE
Q psy15738        131 TWTRKNNNL-PGGEY--SY-------SGNSLTVRHTNRHSAG-IYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       131 ~W~~~~~~~-~~~~~--~~-------~~~~l~i~~~~~~d~g-~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      .|++++..+ .....  ..       ....|.|.++..+|.| .|.|.|.|..|.. +..+.|.|
T Consensus       265 ~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~-~~~~~l~v  328 (329)
T 3oq3_B          265 DWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDK-TLTTTVVL  328 (329)
T ss_dssp             EEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEE-EEEEEEEE
T ss_pred             EEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCce-EEEEEEEe
Confidence            999998863 32221  11       3467999999999999 9999999999987 46766655

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.81  E-value=6.8e-19  Score=119.43  Aligned_cols=123  Identities=14%  Similarity=0.088  Sum_probs=88.3

Q ss_pred             ceeEEEEEecccceeEEeecc---ceeeEEEEEEEEcC--CeeEEecCCceEEEecCCcEEEEeEeccCCC--CcEEEEe
Q psy15738         62 LSYILAMEKEEEERKKKKKRK---KRKKKKKKKEKRIP--PRIIYVSGAGKVEVKKGYSVTLECKADGNPV--PNITWTR  134 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~---~~~~~~~~l~v~~~--p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~~~W~~  134 (187)
                      +..|..+..+|+|.|+|.+..   ...+..+.|.|..+  |.+. ...+....+.+|+.+.|.|.+.|.|.  +.+.|++
T Consensus        65 ~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~-~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~  143 (213)
T 2x1w_L           65 GFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVV-LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEY  143 (213)
T ss_dssp             EEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEE-EESCSCEEEETTCCEEEEEEEEECTTBCCEEEEEC
T ss_pred             cEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceE-EcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEe
Confidence            345888999999999996542   22333366777542  2232 22333457889999999999998654  4799999


Q ss_pred             CCeeCCCCcE-------------EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        135 KNNNLPGGEY-------------SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       135 ~~~~~~~~~~-------------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      ++..+.....             ....+.|.|.++..+|+|.|.|.|.|..|.. +..+.|.|..
T Consensus       144 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~  207 (213)
T 2x1w_L          144 PSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHE  207 (213)
T ss_dssp             SCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEEC
T ss_pred             cCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcE-EEEEEEEEec
Confidence            9876432211             1123469999999999999999999999988 6899998864

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.81  E-value=3.4e-19  Score=126.93  Aligned_cols=150  Identities=17%  Similarity=0.236  Sum_probs=96.6

Q ss_pred             ceEEccCCCCeeEEEeC-eEeeec----cEEEeeccccccceeEEEEEecccceeEEeeccceee---EEEEEEEE---c
Q psy15738         27 AIMFADSRPESTFWIFG-KLITSC----SYIILATSLLHYLSYILAMEKEEEERKKKKKRKKRKK---KKKKKEKR---I   95 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~~-~~~~~~----~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~~~~~---~~~~l~v~---~   95 (187)
                      .|.+.+.+.....|+++ ..+...    +......+    ...|..+...|.|.|+|.+......   ..+.|.|.   .
T Consensus       129 ~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~  204 (304)
T 2yd9_A          129 LCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG----ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNV  204 (304)
T ss_dssp             CCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTS----CEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCE
T ss_pred             EEECccCCCCeEEEEECCEECcCCCCcceEEeCCCe----EEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeecc
Confidence            34444455556666644 433321    22222222    3347788999999999955433222   22566664   3


Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCc--EEEEecCCCCCCeEEEEEEecCCC
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGN--SLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      +|.+..  .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...... ..+  .|.+.++  +|+|.|.|.|.|..|
T Consensus       205 ~P~~~~--~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~-~~~~~~L~i~~~--~d~G~Y~C~a~N~~G  279 (304)
T 2yd9_A          205 APRFSI--LPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDM-PVGRNVLELTDV--KDSANYTCVAMSSLG  279 (304)
T ss_dssp             EEEEEE--CCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSC-CBSEEEEEECSC--CSCEEEEEEEEETTE
T ss_pred             CCcEEe--cCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccc-cCCcEEEEEccc--ccCEEEEEEEEeCCC
Confidence            455432  233456788999999999999999999999999887654321 123  3555544  689999999999999


Q ss_pred             CcceeeEEEEEEe
Q psy15738        174 SSAAASIALHVLC  186 (187)
Q Consensus       174 ~~~s~~~~l~v~~  186 (187)
                      .. +..+.|.|..
T Consensus       280 ~~-~~~~~l~V~~  291 (304)
T 2yd9_A          280 VI-EAVAQITVKS  291 (304)
T ss_dssp             EE-EEEEEEC---
T ss_pred             cE-EEEEEEEEec
Confidence            88 5788887753

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.81  E-value=2.4e-18  Score=114.05  Aligned_cols=110  Identities=14%  Similarity=0.183  Sum_probs=86.7

Q ss_pred             eeEEEEEecccceeEEeeccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC
Q psy15738         63 SYILAMEKEEEERKKKKKRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG  142 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~  142 (187)
                      ..|..++.+|.|.|+|......  ..+.|.|..   +. .  +....+.+|+.+.|.|.+.+.|.|.+.|++++..+   
T Consensus        70 L~i~~v~~~D~G~Y~C~~~~~~--~~~~l~V~~---~~-~--~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~---  138 (184)
T 2ny1_B           70 LIIKNLKIEDSDTYICEVEDQK--EEVQLLVFG---LT-A--NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN---  138 (184)
T ss_dssp             EEECSCCGGGCEEEEEEETTEE--EEEEEEEEE---EE-E--SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE---
T ss_pred             EEEecCCHHHCEEEEEEEEcCC--CcEEEEEEE---ec-C--CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc---
Confidence            4588999999999999666553  356666663   11 1  22346789999999999999999999999987543   


Q ss_pred             cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        143 EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       143 ~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                        ......|.|.++..+|+|.|.|.|.|..+.. +..+.|.|..
T Consensus       139 --~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~-~~~~~l~V~~  179 (184)
T 2ny1_B          139 --IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV-EFKIDIVVLA  179 (184)
T ss_dssp             --EEESSEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             --ccCceEEEEecCCcCCCeEEEEEEEECCceE-EEEEEEEEEe
Confidence              3356889999999999999999999988877 5788887753

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.80  E-value=1.3e-18  Score=124.09  Aligned_cols=119  Identities=15%  Similarity=0.235  Sum_probs=88.2

Q ss_pred             eeEEEEEecccceeEEeeccceeeEEEEEEEE---------------------cCCeeEEecCCceEEEecCCcEEEEeE
Q psy15738         63 SYILAMEKEEEERKKKKKRKKRKKKKKKKEKR---------------------IPPRIIYVSGAGKVEVKKGYSVTLECK  121 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~---------------------~~p~~~~~~~~~~~~~~~g~~~~l~C~  121 (187)
                      ..|..+..+|.|.|+|.+..........+.+.                     .+|.+...   ....+.+|+.+.|.|.
T Consensus       168 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~v~~G~~~~l~C~  244 (312)
T 2y23_A          168 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY---LSWEVTGECNVLLKCK  244 (312)
T ss_dssp             EEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEE---EEEEEETTTEEEEEEE
T ss_pred             EEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeec---ceEEEeCCCEEEEEEE
Confidence            44778888999999997765555555555541                     23544311   1256789999999999


Q ss_pred             eccCCCC-cEEEEeCCeeCCC-CcEEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        122 ADGNPVP-NITWTRKNNNLPG-GEYSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       122 ~~g~p~p-~~~W~~~~~~~~~-~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      +.|.|+| .+.|++++..+.. .+...  ....|.|.++..+|+|.|.|.|.|..|.. +..+.|.+.
T Consensus       245 ~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~i~  311 (312)
T 2y23_A          245 VANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKD-KSRLKLVDE  311 (312)
T ss_dssp             EESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCE-EEEEEECSC
T ss_pred             EcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCce-eeeeEEEec
Confidence            9999988 9999999987652 22221  22589999999999999999999999988 577777653

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.80  E-value=2.3e-18  Score=125.55  Aligned_cols=115  Identities=15%  Similarity=0.045  Sum_probs=86.6

Q ss_pred             EEEEEecccceeEEeec--cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEecc-----CCCCcEEEEeCCe
Q psy15738         65 ILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADG-----NPVPNITWTRKNN  137 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-----~p~p~~~W~~~~~  137 (187)
                      |..+..+|.|.|+|.+.  .......+.|.|..+|...     ....+.+|+.+.|.|.+.+     .|.|.+.|++++.
T Consensus       146 i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~-----~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~  220 (363)
T 1wio_A          146 VSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS-----SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERA  220 (363)
T ss_dssp             ECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSE-----EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSC
T ss_pred             EeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCC-----CceEEecCCEEEEEEEEecccccCCCceeEEEecCCC
Confidence            56778889999999554  3334455567776655432     3456788999999998877     7788999999998


Q ss_pred             eCCC--------C-cEEE------------e--CcEEEEecCCCCCCeEEEEEEecC--CCCcceeeEEEEEE
Q psy15738        138 NLPG--------G-EYSY------------S--GNSLTVRHTNRHSAGIYLCVANNM--VGSSAAASIALHVL  185 (187)
Q Consensus       138 ~~~~--------~-~~~~------------~--~~~l~i~~~~~~d~g~y~C~~~n~--~g~~~s~~~~l~v~  185 (187)
                      .+..        . ....            .  ...|.|.++..+|+|.|.|.|.|.  .|.. +..+.|.|.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~-~~~~~l~V~  292 (363)
T 1wio_A          221 SSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKL-HQEVNLVVM  292 (363)
T ss_dssp             CCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCE-EEEEEEEEE
T ss_pred             CccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeE-EEEEeEEEE
Confidence            7654        2 2211            1  348999999999999999999999  8976 678887764

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.80  E-value=2.8e-18  Score=121.27  Aligned_cols=156  Identities=14%  Similarity=0.164  Sum_probs=105.2

Q ss_pred             eEEccCC-CCeeEEEe--CeEee--eccEEEeeccccccceeEEEEEecccceeEEeecc---ceeeEEEEEEEEcCCee
Q psy15738         28 IMFADSR-PESTFWIF--GKLIT--SCSYIILATSLLHYLSYILAMEKEEEERKKKKKRK---KRKKKKKKKEKRIPPRI   99 (187)
Q Consensus        28 ~~~~~~~-~~~~~w~~--~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~---~~~~~~~~l~v~~~p~~   99 (187)
                      |.+.... .....|++  +..+.  ..++.+...........|..++.+|.|.|+|.+..   ...+..+.|.|..+|.+
T Consensus        24 C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~  103 (291)
T 1qz1_A           24 CQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMF  103 (291)
T ss_dssp             EEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEE
T ss_pred             EEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccc
Confidence            4444433 35566653  23332  22333332222233444778899999999995443   34567788888888877


Q ss_pred             EEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC---cEE-EeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        100 IYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG---EYS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       100 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~---~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ..  .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...   +.. ...+.|.|.++...|.|.|.|.+.|..+..
T Consensus       104 ~~--~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  181 (291)
T 1qz1_A          104 KN--APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE  181 (291)
T ss_dssp             EE--CCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTE
T ss_pred             cC--CCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCCc
Confidence            53  344567889999999999999999999999999876432   222 245689999999999999999999976433


Q ss_pred             -ceeeEEEEEE
Q psy15738        176 -AAASIALHVL  185 (187)
Q Consensus       176 -~s~~~~l~v~  185 (187)
                       .+..+.|.|.
T Consensus       182 ~~~~~~~l~v~  192 (291)
T 1qz1_A          182 INFKDIQVIVN  192 (291)
T ss_dssp             EEEEEEEEEEE
T ss_pred             eeeEEEEEEEe
Confidence             2345555553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.79  E-value=9.2e-20  Score=132.36  Aligned_cols=118  Identities=14%  Similarity=0.212  Sum_probs=92.4

Q ss_pred             ceeEEEEEecccc-eeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCee
Q psy15738         62 LSYILAMEKEEEE-RKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNN  138 (187)
Q Consensus        62 ~~~~~~v~~~d~g-~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~  138 (187)
                      ...|..+..+|.| .|+|.+  ..+..+..+.|.|..+|.+ ...     ...+|+.+.|.|.+.|.|.|.+.|+++|..
T Consensus       213 ~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i-~~~-----~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~  286 (347)
T 2ifg_A          213 GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASV-QLH-----TAVEMHHWCIPFSVDGQPAPSLRWLFNGSV  286 (347)
T ss_dssp             EEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEE-EEC-----CCEESSSEEEEEEEEEESCCEEEEEETTEE
T ss_pred             eEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCee-eec-----cCccCceEEEEEEeeecCCCcEEEEeCCEE
Confidence            3447889999999 999944  3445566777778777775 121     235789999999999999999999999998


Q ss_pred             CCCCcEEE------------eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        139 LPGGEYSY------------SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       139 ~~~~~~~~------------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      +.......            ..+.|.|.++..+|+|.|.|.|.|..|.. +..+.|.|..
T Consensus       287 l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~  345 (347)
T 2ifg_A          287 LNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA-SASIMAAFMD  345 (347)
T ss_dssp             CCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEECSCC
T ss_pred             CCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCce-eeEEEEEecC
Confidence            86553321            14569999999999999999999999987 6888887654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.79  E-value=4.7e-18  Score=113.78  Aligned_cols=119  Identities=28%  Similarity=0.362  Sum_probs=86.9

Q ss_pred             eEEEEEecccceeEEeeccce---ee--EEEEEEEE-------cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEE
Q psy15738         64 YILAMEKEEEERKKKKKRKKR---KK--KKKKKEKR-------IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNIT  131 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~~~~---~~--~~~~l~v~-------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~  131 (187)
                      .|..+..+|.|.|+|......   ..  ....+.+.       .+|.+....  ....+..|+.+.|.|.+.|.|.|.+.
T Consensus        69 ~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~p~v~  146 (201)
T 3s97_C           69 YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQF--KDVYALMGQNVTLECFALGNPVPDIR  146 (201)
T ss_dssp             EESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEEC--CCEEEETTCCEEEEEEEEEESCCEEE
T ss_pred             EECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecC--CceEEecCCcEEEEEEccCCCCCceE
Confidence            367788888888888443211   11  22333332       234343222  25678899999999999999999999


Q ss_pred             EEeCCeeCCCCcEE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        132 WTRKNNNLPGGEYS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       132 W~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      |++++..+...... .....|.|.++..+|.|.|.|.|.|..|.. +..+.|.|.
T Consensus       147 W~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~  200 (201)
T 3s97_C          147 WRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKD-KHQARIYVQ  200 (201)
T ss_dssp             EEETTBCCCTTCEEETTTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EEeCCCcCCCceeecCCCCEEEEccCChhhCEEEEEEEEecCCce-eeeEEEEEe
Confidence            99999877654332 245789999999999999999999999988 578888774

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.79  E-value=6.7e-19  Score=118.94  Aligned_cols=122  Identities=16%  Similarity=0.246  Sum_probs=92.4

Q ss_pred             cceeEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEe-ccCCCCcEEEEeCCe
Q psy15738         61 YLSYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKA-DGNPVPNITWTRKNN  137 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~~  137 (187)
                      ....|..++.+|.|.|+|..  .....+..+.|.|..+|.+.....  ...+..|+.+.|.|.+ .|.|.|.+.|++++.
T Consensus        84 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~--~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~  161 (214)
T 3jz7_A           84 ASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFV--DGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSD  161 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEE--ESCCBTTCCEEEEEECSBCCSSCEEEEEECST
T ss_pred             ccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeee--ecceecCCcEEEEecCCCCCCCCEEEEEECCC
Confidence            34458899999999999944  344567788999998887542221  2236789999999999 899999999999543


Q ss_pred             --eCCCCcE-EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        138 --NLPGGEY-SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       138 --~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                        .+..... ....+.|.|.++..+|+|.|.|.|.|..|.. +..+.|.|.
T Consensus       162 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  211 (214)
T 3jz7_A          162 SQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSD-QCMLRLDVV  211 (214)
T ss_dssp             TCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEECCB
T ss_pred             CCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcE-EEEEEEEEe
Confidence              3222111 1134689999999999999999999999988 688888765

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.79  E-value=4.3e-18  Score=118.51  Aligned_cols=116  Identities=17%  Similarity=0.261  Sum_probs=83.6

Q ss_pred             eEEEEEecccceeEEeec--cceeeEEEEEEEEc---CCeeEEecCCceEEEecCCcEEEEeEeccCCC-Cc----EEEE
Q psy15738         64 YILAMEKEEEERKKKKKR--KKRKKKKKKKEKRI---PPRIIYVSGAGKVEVKKGYSVTLECKADGNPV-PN----ITWT  133 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~----~~W~  133 (187)
                      .|..+..+|.|.|+|.+.  ....+..+.|.|..   +|.+. . .+ ...+..|+.+.|.|.+.+.|. |.    +.|+
T Consensus       134 ~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~-~-~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~  210 (262)
T 3rjd_A          134 TILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLN-A-SV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFY  210 (262)
T ss_dssp             EESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEE-E-SS-CSSEETTCCEEEEEECCCCCC-----EEEEEE
T ss_pred             EEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEe-e-cC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEE
Confidence            366788889999999544  34455666888875   33332 2 22 345788999999999999875 53    6799


Q ss_pred             eCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcc--eeeEEEEEE
Q psy15738        134 RKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSA--AASIALHVL  185 (187)
Q Consensus       134 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~--s~~~~l~v~  185 (187)
                      +++..+...   .....|.|.++..+|+|.|.|.|.|..|...  +..+.|.|.
T Consensus       211 ~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l~V~  261 (262)
T 3rjd_A          211 MGSKTLRGR---NTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL  261 (262)
T ss_dssp             ETTEEEEEE---ESCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEECEE
T ss_pred             eCCcEeccc---CCCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEEEEe
Confidence            998765421   2456899999999999999999999999753  445555553

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.79  E-value=1.1e-18  Score=123.53  Aligned_cols=121  Identities=18%  Similarity=0.257  Sum_probs=90.8

Q ss_pred             eeEEEEEecccc-eeEEeeccce---eeEEEEEEEE----cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCc-EEEE
Q psy15738         63 SYILAMEKEEEE-RKKKKKRKKR---KKKKKKKEKR----IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPN-ITWT  133 (187)
Q Consensus        63 ~~~~~v~~~d~g-~y~c~~~~~~---~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-~~W~  133 (187)
                      ..|..+..+|.| .|+|.+....   .+..+.|.|.    .+|.+.  ..+....+.+|+.+.|.|.+.|.|.|. +.|+
T Consensus       147 L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~--~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~  224 (290)
T 2o26_X          147 ITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVS--VPETSHLLKKGDTFTVVCTIKDVSTSVNSMWL  224 (290)
T ss_dssp             EEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEE--CSCSBCCCCTTCCEEEEEEEEESSTTCEEEEE
T ss_pred             EEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccc--cCCCcceEecCCcEEEEEEEecCCcceeEEEe
Confidence            448899999999 9999554322   2345788876    667664  223344778899999999999999996 9999


Q ss_pred             eCCeeC----CCC-c-------EEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        134 RKNNNL----PGG-E-------YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       134 ~~~~~~----~~~-~-------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      +++..+    ... .       .....+.|.|.++..+|+|.|.|.|.|..|.. +..+.|.|..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~  288 (290)
T 2o26_X          225 KMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSA-NVTTTLKVVE  288 (290)
T ss_dssp             EESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEE-EEEEEECC--
T ss_pred             cCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcE-EEEEEEEEEe
Confidence            998762    211 1       11234689999999999999999999999988 6888887764

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.79  E-value=7.1e-19  Score=126.74  Aligned_cols=122  Identities=16%  Similarity=0.188  Sum_probs=90.3

Q ss_pred             eeEEEEEecccceeEEeec--cceeeEEEEEEEEcCC----eeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEe--
Q psy15738         63 SYILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIPP----RIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTR--  134 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~p----~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~--  134 (187)
                      ..|..+..+|.|.|+|.+.  .+.....+.|.|...+    .+. ...+....+..|+.+.|.|.+.|.|.|.+.|++  
T Consensus       182 L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~-~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~  260 (334)
T 1ry7_B          182 LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQ-AGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHV  260 (334)
T ss_dssp             EEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCC-TTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECC
T ss_pred             EEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceE-ecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECC
Confidence            4477888999999999443  4455667788887532    221 122345678899999999999999999999999  


Q ss_pred             --CCeeCCCCcE----EEe----------CcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        135 --KNNNLPGGEY----SYS----------GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       135 --~~~~~~~~~~----~~~----------~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                        ++..+.....    ...          ...|.|.++...|+|.|.|.|.|..|.. +..+.|.|..
T Consensus       261 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~  327 (334)
T 1ry7_B          261 EVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFS-HHSAWLVVLP  327 (334)
T ss_dssp             CGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCE-EEEEEEEEEC
T ss_pred             cCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeE-EEEEEEEEEE
Confidence              5655432211    000          1379999999999999999999999988 5788888753

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.78  E-value=9.7e-18  Score=112.11  Aligned_cols=112  Identities=20%  Similarity=0.222  Sum_probs=76.7

Q ss_pred             eeEEEEEecccceeEEeec--cceeeEEEEEEEEcCCeeEEecCCceEEEecCC-cEEEEeEeccC-CCCcEEEEeCCee
Q psy15738         63 SYILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGY-SVTLECKADGN-PVPNITWTRKNNN  138 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~-~~~l~C~~~g~-p~p~~~W~~~~~~  138 (187)
                      ..|.+++.+|.|.|+|...  .......+.|.|..++......... .....|. .+.|.|.+.|. |.|.+.|++++..
T Consensus        72 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~-~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~  150 (193)
T 2if7_A           72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS-QLFQNMTCELHLTCSVEDADDNVSFRWEALGNT  150 (193)
T ss_dssp             EEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECC-C---CSSEEEEEEEEEESCCTTCEEEEEETTEE
T ss_pred             EEECCCCcccCceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCc-eeecCCCceEEEEEEEecCCCceEEEEEeCCEE
Confidence            3488999999999999443  3333457788888765432121111 1223455 79999999985 4789999999875


Q ss_pred             CCCCcEEEeCcEEEEecCCCC-CCeEEEEEEecCCCCcceeeEEE
Q psy15738        139 LPGGEYSYSGNSLTVRHTNRH-SAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       139 ~~~~~~~~~~~~l~i~~~~~~-d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      +.      ....|.+...... |.|.|.|.|.|..|.. +..+.+
T Consensus       151 l~------~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~-s~~~~~  188 (193)
T 2if7_A          151 LS------SQPNLTVSWDPRISSEQDYTCIAENAVSNL-SFSVSA  188 (193)
T ss_dssp             EE------SSSEEEEEECTTTCSCCEEEEEEEETTEEE-EEEEEH
T ss_pred             cC------CCCeEEEEeccCcCCCCcEEEEEECCCCcc-cccccc
Confidence            43      2345677655554 8999999999999977 565543

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.78  E-value=1e-18  Score=117.05  Aligned_cols=120  Identities=17%  Similarity=0.179  Sum_probs=86.7

Q ss_pred             ceeEEEEEecccceeEEeeccc----eeeEEEEEEEEc---CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEe
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK----RKKKKKKKEKRI---PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTR  134 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~----~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~  134 (187)
                      ...|..++.+|+|.|+|.+...    ..+..+.|.|..   +|.+....  . ..+.+|+.+.|.|.+.+ +++.+.|++
T Consensus        59 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~--~-~~v~~G~~v~L~C~~~~-~~~~~~w~k  134 (196)
T 3p2t_A           59 RFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALP--S-PLVTSGKSVTLLCQSRS-PMDTFLLCK  134 (196)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEES--C-SEECTTCCEEEEEEEEE-EEEEEEEEE
T ss_pred             EEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCC--c-ceecCCCeEEEEEecCC-CCCEEEEEe
Confidence            3447788999999999954432    335667888864   34443222  2 25789999999999987 456899999


Q ss_pred             CCeeCCCCcEE------EeCcEEEEecCCCCCCeEEEEEEecCCC----CcceeeEEEEEE
Q psy15738        135 KNNNLPGGEYS------YSGNSLTVRHTNRHSAGIYLCVANNMVG----SSAAASIALHVL  185 (187)
Q Consensus       135 ~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~n~~g----~~~s~~~~l~v~  185 (187)
                      ++..+......      .....|.|.++..+|+|.|.|.|.|..+    ...|..+.|.|.
T Consensus       135 ~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  195 (196)
T 3p2t_A          135 ERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVS  195 (196)
T ss_dssp             TTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred             CCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence            99766433211      2356799999999999999999999886    444677777763

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.78  E-value=8.3e-17  Score=106.47  Aligned_cols=114  Identities=21%  Similarity=0.337  Sum_probs=87.9

Q ss_pred             EecccceeEEeeccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCC-CCcEEEEe---CCe-eCCC--
Q psy15738         69 EKEEEERKKKKKRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNP-VPNITWTR---KNN-NLPG--  141 (187)
Q Consensus        69 ~~~d~g~y~c~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p-~p~~~W~~---~~~-~~~~--  141 (187)
                      ..+|.|.|+|.+.. .....+.|.|..+|.+...  +....+.+|+.+.|.|.+.|.| .|.+.|++   ++. .+..  
T Consensus        57 ~~~d~G~Y~C~~~n-~~~~~~~l~V~~~P~~~~~--~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~  133 (184)
T 3b5h_A           57 SDDQWGEYSCVFLP-EPMGTANIQLHGPPRVKAV--KSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGS  133 (184)
T ss_dssp             GGGCCEEEEEEEES-TTSCEEEEEECCSCCCEES--CSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTG
T ss_pred             chhhCeEEEEEEEC-CcCcEEEEEEecCCceeec--CCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCC
Confidence            47799999996664 3447789999999987533  3456788899999999999999 79999999   443 3322  


Q ss_pred             -CcEEEe----CcEEEEecCC-CCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        142 -GEYSYS----GNSLTVRHTN-RHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       142 -~~~~~~----~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                       .++...    ...|.|.++. ..|.|.|.|.|.|..|.. ...+.|.|..
T Consensus       134 ~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~  183 (184)
T 3b5h_A          134 ESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSD-QAIITLRVRS  183 (184)
T ss_dssp             GGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEE-EEEEEEEEC-
T ss_pred             CCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcc-eEEEEEEEec
Confidence             222221    2479999999 899999999999999988 5778888754

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.78  E-value=8.1e-18  Score=113.68  Aligned_cols=121  Identities=12%  Similarity=0.196  Sum_probs=86.1

Q ss_pred             eeEEEEEecccceeEEee---ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeC
Q psy15738         63 SYILAMEKEEEERKKKKK---RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNL  139 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~---~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~  139 (187)
                      +.|.+++.+|.|.|.|..   ..........+.+..++...... .....+..+..+.+.|.+.|.|+|.+.|++++..+
T Consensus        81 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~  159 (218)
T 4frw_A           81 VLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNP-GPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGT  159 (218)
T ss_dssp             EEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEE-CSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCE
T ss_pred             EEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeee-eeeeeeeeccccceeeeccCCcCceEEEEECCccc
Confidence            447789999999999933   23334444455555554433222 23355677899999999999999999999998755


Q ss_pred             CCCcEE------EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        140 PGGEYS------YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       140 ~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      ......      ...+.|.|.++...|.|.|+|.|.|..|.. +..+++.|.
T Consensus       160 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~-~~~~t~~v~  210 (218)
T 4frw_A          160 TSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQ-DQRITHILH  210 (218)
T ss_dssp             EEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSS-CEEEEEECC
T ss_pred             ccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCe-EEEEEEEEE
Confidence            332221      123579999999999999999999999987 466666554

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.78  E-value=1e-17  Score=119.30  Aligned_cols=156  Identities=19%  Similarity=0.240  Sum_probs=104.8

Q ss_pred             ceEEccCCCCeeEEEeC-eEeeeccEEEeeccc-cccceeEEEEEe-cccceeEEeec--cceeeEEEEEEEEcC-----
Q psy15738         27 AIMFADSRPESTFWIFG-KLITSCSYIILATSL-LHYLSYILAMEK-EEEERKKKKKR--KKRKKKKKKKEKRIP-----   96 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~-~~~~~~~~~v~~-~d~g~y~c~~~--~~~~~~~~~l~v~~~-----   96 (187)
                      .|.+.+.+.....|+++ ..+...++.+..... ......|..+.. +|.|.|+|.+.  .+..+..+.|.|..+     
T Consensus        27 ~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~  106 (304)
T 2yd9_A           27 VCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPS  106 (304)
T ss_dssp             EEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEECGGGCCT
T ss_pred             EEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEeccccCCC
Confidence            45555555556777643 555555554433221 113344667777 89999999543  344567788888765     


Q ss_pred             --CeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC----cE-EEeCcEEEEecCCCCCCeEEEEEEe
Q psy15738         97 --PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG----EY-SYSGNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus        97 --p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~----~~-~~~~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                        |.+.  ..+....+..|+.+.|.|.+.|.|.|.+.|++++..+...    +. ....+.|.|.++...|.|.|.|.|.
T Consensus       107 ~~p~i~--~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  184 (304)
T 2yd9_A          107 GFPNID--MGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVAT  184 (304)
T ss_dssp             TCCEEE--ECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEE
T ss_pred             CCCeee--cCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEE
Confidence              4443  3344567888999999999999999999999999877543    12 2245689999999999999999999


Q ss_pred             cCCCCcceeeEEEEE
Q psy15738        170 NMVGSSAAASIALHV  184 (187)
Q Consensus       170 n~~g~~~s~~~~l~v  184 (187)
                      |..|...+..+.|.|
T Consensus       185 n~~g~~~~~~~~l~v  199 (304)
T 2yd9_A          185 NSAGVRYSSPANLYV  199 (304)
T ss_dssp             ETTEEEECCCEEEEE
T ss_pred             eCCCCEEeccEEEEE
Confidence            998876433345544

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.78  E-value=1.7e-17  Score=123.41  Aligned_cols=110  Identities=18%  Similarity=0.214  Sum_probs=81.3

Q ss_pred             EecccceeEEeeccce---eeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEecc-CCCCcEEEEeCCeeCCCCcE
Q psy15738         69 EKEEEERKKKKKRKKR---KKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADG-NPVPNITWTRKNNNLPGGEY  144 (187)
Q Consensus        69 ~~~d~g~y~c~~~~~~---~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~  144 (187)
                      ...|.|.|+|.+....   ....+.|.|..+|.+    .+....+.+|+.+.|.|.+.| .|.|.+.|++++..+.....
T Consensus       199 ~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~----~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~  274 (423)
T 3qs7_E          199 HELFGTDIRCCARNELGRECTRLFTIDLNQTPQT----TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNY  274 (423)
T ss_dssp             CCCCSSCEEEEEECSSCEEEEECEEEESSSCCCS----STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGE
T ss_pred             ecccCeEEEEEEEcCCCCcceeeEEEEEecCCcc----CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccce
Confidence            3458899999665322   223466777666654    233567889999999999998 67799999999987754321


Q ss_pred             -----------EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        145 -----------SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       145 -----------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                                 ......|.|.++..+|+|.|.|.|.|.   . +..+.|.|..
T Consensus       275 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~-~~~~~L~V~~  323 (423)
T 3qs7_E          275 FEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---P-SQSALVTIVE  323 (423)
T ss_dssp             EEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---E-EEEEEEEEES
T ss_pred             eecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---C-CceEEEEEEe
Confidence                       112347999999999999999999998   3 5777777753

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.78  E-value=7e-18  Score=128.53  Aligned_cols=122  Identities=16%  Similarity=0.080  Sum_probs=97.7

Q ss_pred             eEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecC-CceEEEecCCcEEEEeEeccCCCCc-EEEEeCCeeC
Q psy15738         64 YILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSG-AGKVEVKKGYSVTLECKADGNPVPN-ITWTRKNNNL  139 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~  139 (187)
                      .|..+..+|.|.|+|.+  ..+.....+.|.|..+|.+..... .....+.+|+.+.|.|.+.|.|.|. +.|++++..+
T Consensus       276 ~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~  355 (524)
T 2ec8_A          276 TISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTF  355 (524)
T ss_dssp             EESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBC
T ss_pred             EECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeec
Confidence            36778889999999944  345556688999999998764432 3457788999999999999999999 9999999887


Q ss_pred             CCCc--EEE--------eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        140 PGGE--YSY--------SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       140 ~~~~--~~~--------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      ....  +..        ....|.|.++..+|.|.|.|.|.|..|.. +..+.|.|.+
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~  411 (524)
T 2ec8_A          356 TDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNA-AIAFNVYVNT  411 (524)
T ss_dssp             SSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEECE
T ss_pred             cCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceE-EEEEEEEEec
Confidence            6543  211        12579999999999999999999999987 6788887754

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.78  E-value=4.4e-19  Score=118.02  Aligned_cols=66  Identities=18%  Similarity=0.360  Sum_probs=55.0

Q ss_pred             ecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEeC
Q psy15738        111 KKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK  187 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~~  187 (187)
                      .+|+.+.|.|.+   |.|.+.|+++|..+.....  ....|.|.++..+|+|.|.|.|.|..|..      |.|.|+
T Consensus       120 ~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~------l~V~yr  185 (186)
T 1jbj_A          120 RGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA--TKNTWNLGNNAKDPRGTYQCQGAKETSNP------LQVYYR  185 (186)
T ss_dssp             SSSCEEEEECSS---SCSCEEEEETTEECCCSSC--CSSCCEEEETTSCCEEEEEEEESSCEEEE------EEEECC
T ss_pred             CCCCeEEEEeeC---CCCeEEEEECCEECcccCC--CcceEEECCCCcCcCEEEEEEEEcCcCCc------EEEEEe
Confidence            389999999998   8899999999998764322  45789999999999999999999987643      667664

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.77  E-value=7.1e-18  Score=113.77  Aligned_cols=73  Identities=21%  Similarity=0.416  Sum_probs=59.5

Q ss_pred             ecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC----cEEEeCcEEEEecC-CCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        111 KKGYSVTLECKADGNPVPNITWTRKNNNLPGG----EYSYSGNSLTVRHT-NRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~----~~~~~~~~l~i~~~-~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      .+|+.+.|.|.  |.|.|.+.|++++..+...    ......+.|.|.++ ..+|+|.|.|.|.|..|...+..+.|.|.
T Consensus       126 ~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~~  203 (204)
T 1sy6_A          126 ISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR  203 (204)
T ss_dssp             EETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEEC
T ss_pred             ecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEEe
Confidence            38999999998  7888999999999876432    12235789999999 99999999999999999754667776654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.77  E-value=9.5e-18  Score=133.84  Aligned_cols=118  Identities=25%  Similarity=0.432  Sum_probs=94.1

Q ss_pred             eeEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCC
Q psy15738         63 SYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLP  140 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~  140 (187)
                      ..|..+..+|.|.|+|.+  ..+..+.++.|.|..+|.+...  +....+..|+.+.|.|.+.|.|.|.+.|++++..+.
T Consensus       679 L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~--~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~  756 (816)
T 3dmk_A          679 LTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILE--PTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTP  756 (816)
T ss_dssp             EEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEEC--CCCEEEETTCCEEEECEEEEESCCEEECCEECSSST
T ss_pred             EEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeee--cccceecCCCcEEEEEEEecCCCCeEEEEecCCCCC
Confidence            447888999999999954  4566677889999999987533  345678899999999999999999999999875443


Q ss_pred             CC--------cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        141 GG--------EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       141 ~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      ..        ......+.|.|.++..+|+|.|.|.|.|..|... ..+.+.
T Consensus       757 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~~v~~~  806 (816)
T 3dmk_A          757 GEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGL-SAVIMI  806 (816)
T ss_dssp             TCCBCCCCBTTEEEETTEEEECSCCGGGCEEEEEEEECSSSSCE-EEEEEE
T ss_pred             ccccccccCCCEEecCCEEEECcCChhhCeEEEEEEEeCCCCCc-EEEEEE
Confidence            21        2233567899999999999999999999999985 555544

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.77  E-value=5.5e-17  Score=126.38  Aligned_cols=107  Identities=16%  Similarity=0.273  Sum_probs=85.5

Q ss_pred             eeEEEEEecccceeEEeeccc---eeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeC
Q psy15738         63 SYILAMEKEEEERKKKKKRKK---RKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNL  139 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~---~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~  139 (187)
                      ..|..+..+|.|.|+|.+...   ..+..+.|.|..+|..... .+....+..|+.+.|.|.+.|.|.|.+.|+++|..+
T Consensus       344 L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~  422 (642)
T 1e07_A          344 LTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTI-SPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQ  422 (642)
T ss_pred             EEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCee-cCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEc
Confidence            447788899999999955432   3456688999877764322 233456789999999999999999999999999876


Q ss_pred             CCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcc
Q psy15738        140 PGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSA  176 (187)
Q Consensus       140 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  176 (187)
                      ..      ...|.|.++...|.|.|.|.|.|..|...
T Consensus       423 ~~------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  453 (642)
T 1e07_A          423 QH------TQELFISNITEKNSGLYTCQANNSASGHS  453 (642)
T ss_pred             CC------CceEEEccCChhhCeEEEEEEEcCCCCCc
Confidence            54      35699999999999999999999998763

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.77  E-value=1.5e-17  Score=121.85  Aligned_cols=120  Identities=23%  Similarity=0.295  Sum_probs=87.8

Q ss_pred             eeEEEEEecccceeEEeeccce-------eeEEEEEEEEc------CCeeEEecCCceEEEecCCcEEEEeEeccCCCCc
Q psy15738         63 SYILAMEKEEEERKKKKKRKKR-------KKKKKKKEKRI------PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPN  129 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~-------~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~  129 (187)
                      ..|..+...|.|.|+|.+....       .+..+.|.+..      +|.+. ...+....+.+|+.+.|.|.+.|.|.|.
T Consensus       160 L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~-~~~~~~~~~~~G~~v~l~C~~~g~p~~~  238 (382)
T 1cs6_A          160 LYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIK-AKFPADTYALTGQMVTLECFAFGNPVPQ  238 (382)
T ss_dssp             EEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEE-ECCCSEEEEETTCCEEEECEEEEESCCE
T ss_pred             EEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCcee-ccCCCceEEeCCCeEEEEEEEccCCCCE
Confidence            4466778889999999554322       12334555432      34333 2234466788999999999999999999


Q ss_pred             EEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        130 ITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       130 ~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      +.|++++..+... .......|.|.++..+|.|.|.|.|.|..|.. +..+.|.|.
T Consensus       239 i~W~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~  292 (382)
T 1cs6_A          239 IKWRKLDGSQTSK-WLSSEPLLHIQNVDFEDEGTYECEAENIKGRD-TYQGRIIIH  292 (382)
T ss_dssp             EEEEECCSCCSCC-CSBSSSEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EEEEECCcccccE-EecCCcEEEEccCChhhCEEEEEEEEcCCCeE-EEEEEEEEe
Confidence            9999988765431 12245789999999999999999999999886 577777765

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.77  E-value=3.8e-18  Score=116.18  Aligned_cols=124  Identities=15%  Similarity=0.171  Sum_probs=84.2

Q ss_pred             ceeEEEEEecccceeEEeec-cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEe-ccCCCCcEEEEeC-Cee
Q psy15738         62 LSYILAMEKEEEERKKKKKR-KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKA-DGNPVPNITWTRK-NNN  138 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~-~~~  138 (187)
                      ...|..++.+|.|.|+|... ....+..+.|.|..++............+..|+.+.|.|.+ .|.|.|.+.|+++ +..
T Consensus        73 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~  152 (222)
T 4i0k_A           73 SLRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVP  152 (222)
T ss_dssp             CEEECSCCGGGCSCEEEEEEECCCCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCB
T ss_pred             EEEECCcccccCEEEEEEEEeCCCceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCCeEEEEcCCCcc
Confidence            34488899999999999443 33445666777765532211122223456789999999999 8889999999994 444


Q ss_pred             CCCCcEEE----eC---cEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        139 LPGGEYSY----SG---NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       139 ~~~~~~~~----~~---~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      +.......    ..   ..|.+.++..+|.|.|.|.|.|..|.. +..+.|.|..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~  206 (222)
T 4i0k_A          153 LTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQ-DAHGSVTITG  206 (222)
T ss_dssp             CCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTE-EEEEEEECCC
T ss_pred             CCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCC-ceEEEEEEeC
Confidence            43322111    11   237889999999999999999999988 5788877643

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.77  E-value=1e-17  Score=123.44  Aligned_cols=115  Identities=20%  Similarity=0.362  Sum_probs=88.0

Q ss_pred             EecccceeEEeec----cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC--
Q psy15738         69 EKEEEERKKKKKR----KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG--  142 (187)
Q Consensus        69 ~~~d~g~y~c~~~----~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~--  142 (187)
                      +.+|.|.|+|.+.    +...+..+.|.|..+|.+.  ..+....+.+|+.+.|.|.+.|.|.+.+.|++++..+...  
T Consensus        90 ~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~--~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~  167 (403)
T 3laf_A           90 HKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFL--SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPG  167 (403)
T ss_dssp             BCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEEC--SCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTT
T ss_pred             CCCcceEEEEEEEeCCCccEEEEEEEEEecCCCccc--cCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCC
Confidence            6679999999554    2233556788888777763  3445677889999999999999999999999999876321  


Q ss_pred             --cEE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        143 --EYS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       143 --~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                        ... ...+.|.|.++...|.|.|.|.+.|..+...+..+.|.|.
T Consensus       168 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~  213 (403)
T 3laf_A          168 DSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRIL  213 (403)
T ss_dssp             CCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEE
T ss_pred             ceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEe
Confidence              111 2357899999999999999999999887754556666664

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.77  E-value=2.6e-18  Score=124.51  Aligned_cols=120  Identities=13%  Similarity=0.141  Sum_probs=60.6

Q ss_pred             EEEEEecccceeEEeecc---cee---eEEEEEEEEc------CCeeEEecCCceEEEecCCcEEEEeEec----cCCCC
Q psy15738         65 ILAMEKEEEERKKKKKRK---KRK---KKKKKKEKRI------PPRIIYVSGAGKVEVKKGYSVTLECKAD----GNPVP  128 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~---~~~---~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~----g~p~p  128 (187)
                      |..+..+|.|.|+|.+..   +..   +..+.|.|..      +|.+..........+..|+.+.|.|.+.    |.|.|
T Consensus       181 i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p  260 (349)
T 4dep_C          181 FLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRN  260 (349)
T ss_dssp             EESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCC
T ss_pred             EeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCC
Confidence            778888899999995443   332   5666777765      4554322211112677899999999998    56889


Q ss_pred             cEEEEeCCeeCCC--CcEE-------------EeCcEEEEecCCCCCC-eEEEEEEecCCCCcceeeEEEEEE
Q psy15738        129 NITWTRKNNNLPG--GEYS-------------YSGNSLTVRHTNRHSA-GIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       129 ~~~W~~~~~~~~~--~~~~-------------~~~~~l~i~~~~~~d~-g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      .+.|++++..+..  ....             .....|.|.++..+|. |.|.|.|.|..|.. +..+.|.|.
T Consensus       261 ~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~-~~~~~l~v~  332 (349)
T 4dep_C          261 EVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEV-AKAAKVKQK  332 (349)
T ss_dssp             EEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEE-EEECC----
T ss_pred             EEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcE-EEEEEEeee
Confidence            9999999987654  1110             1123499999999999 99999999999987 466666654

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.76  E-value=8.2e-18  Score=123.44  Aligned_cols=122  Identities=20%  Similarity=0.321  Sum_probs=85.5

Q ss_pred             eEEEEEeccc-ceeEEeeccc---eee---EEEEEEEEcCCeeEEe----cCCceEEEecCCcEEEEeEeccCCCCcEEE
Q psy15738         64 YILAMEKEEE-ERKKKKKRKK---RKK---KKKKKEKRIPPRIIYV----SGAGKVEVKKGYSVTLECKADGNPVPNITW  132 (187)
Q Consensus        64 ~~~~v~~~d~-g~y~c~~~~~---~~~---~~~~l~v~~~p~~~~~----~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W  132 (187)
                      .|..++.+|. |.|+|.+...   ...   ....|.|..+.....+    .......+.+|+.+.|.|.+.|.|.|.+.|
T Consensus       167 ~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W  246 (388)
T 2v5m_A          167 HIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRW  246 (388)
T ss_dssp             EESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEE
T ss_pred             EEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEE
Confidence            3556778898 9999955422   111   1235677665321111    112235678899999999999999999999


Q ss_pred             EeCCeeCC-------CCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        133 TRKNNNLP-------GGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       133 ~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      ++++....       ..+.....+.|.|.++..+|.|.|.|.|.|..|.. +..+.|.|..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~  306 (388)
T 2v5m_A          247 YKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE-SVETVLTVTA  306 (388)
T ss_dssp             EEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEEE
T ss_pred             EecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCce-eEEEEEEEeC
Confidence            99753221       12233456789999999999999999999999987 5777777753

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.76  E-value=2.4e-17  Score=112.09  Aligned_cols=121  Identities=15%  Similarity=0.170  Sum_probs=83.7

Q ss_pred             ceeEEEEEecccceeEEeec-cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeC-CeeC
Q psy15738         62 LSYILAMEKEEEERKKKKKR-KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRK-NNNL  139 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~-~~~~  139 (187)
                      ...|..++.+|.|.|+|... .......+.|.|..++......  ....+..|+.+.|.|.+.|.|.|.+.|+++ +..+
T Consensus        81 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~~~~--~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~  158 (222)
T 3sbw_C           81 ALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQR--ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVL  158 (222)
T ss_dssp             EEEESSCCGGGCEEEEEEEESSSEEEEEEEEEEEBCCCCCEEE--EEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEE
T ss_pred             EEEEcCcccccCeEEEEEEEeCCCceeEEEEEEECCCCCCCce--eeeeecCCCcEEEEEEecCCCCCeEEEEECCCcee
Confidence            34478899999999999544 4556778889998766542111  112456799999999999999999999998 5444


Q ss_pred             CCCcEE-E---eCc---EEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        140 PGGEYS-Y---SGN---SLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       140 ~~~~~~-~---~~~---~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      ...... .   ..+   ......+...|.|.|.|.|.|..|.. ...+.|.|.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~-~~~~~l~v~  210 (222)
T 3sbw_C          159 SGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEE-NHTAELVIP  210 (222)
T ss_dssp             CCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTE-EEEEEEECC
T ss_pred             cCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccce-eeEEEEEec
Confidence            332211 1   111   11222445688999999999999988 577777664

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.76  E-value=2.7e-17  Score=119.19  Aligned_cols=122  Identities=12%  Similarity=0.053  Sum_probs=89.8

Q ss_pred             eEEEEEecccceeEEeec--cceeeEEEEEEEEcCCeeEEec--CCceEEEecCCcEEEEeEe-----ccCCCCcEEEEe
Q psy15738         64 YILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIPPRIIYVS--GAGKVEVKKGYSVTLECKA-----DGNPVPNITWTR  134 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~p~~~~~~--~~~~~~~~~g~~~~l~C~~-----~g~p~p~~~W~~  134 (187)
                      .|..++.+|.|.|+|.+.  .......+.|.|..++......  .+....+..|+.+.|.|.+     .|.|.|.+.|++
T Consensus        82 ~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k  161 (349)
T 4dep_C           82 WFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYM  161 (349)
T ss_dssp             EESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEE
T ss_pred             EEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEee
Confidence            377888899999999554  3444556788888766432111  1234567789999999985     778999999999


Q ss_pred             CCeeCCCC-cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcc---eeeEEEEEE
Q psy15738        135 KNNNLPGG-EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSA---AASIALHVL  185 (187)
Q Consensus       135 ~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~---s~~~~l~v~  185 (187)
                      ++..+... ........|.|.++..+|.|.|.|.|.|..+...   +..+.|.|.
T Consensus       162 ~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~  216 (349)
T 4dep_C          162 GCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVV  216 (349)
T ss_dssp             TTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             CCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEE
Confidence            99988653 3344567899999999999999999999874332   456666664

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.75  E-value=1.6e-17  Score=124.20  Aligned_cols=116  Identities=20%  Similarity=0.268  Sum_probs=90.8

Q ss_pred             eeEEEEEecccceeEEeecc---c---eeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCC
Q psy15738         63 SYILAMEKEEEERKKKKKRK---K---RKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKN  136 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~---~---~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~  136 (187)
                      ..|..+..+|.|.|+|.+..   +   .....+.|.|..+|.+.....+....+.+|+.+.|.|.+.|.|.|.+.|++++
T Consensus       329 L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g  408 (450)
T 1z7z_I          329 LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDG  408 (450)
T ss_dssp             EEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETT
T ss_pred             EEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECC
Confidence            34677888899999995541   2   33477899999888875443345678899999999999999999999999999


Q ss_pred             eeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEeC
Q psy15738        137 NNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK  187 (187)
Q Consensus       137 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~~  187 (187)
                      ..+...     +..+   ++..+|+|.|.|.|.|..|.. +..+.|.|.++
T Consensus       409 ~~~~~~-----g~~~---~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~  450 (450)
T 1z7z_I          409 TFPLPI-----GESV---TVTRDLEGTYLCRARSTQGEV-TREVTVNVLSP  450 (450)
T ss_dssp             TEECCT-----TSCE---ECCGGGCEEEEEEEEETTEEE-EEEEEEEEECC
T ss_pred             cccCCC-----CCeE---eEehhhCeEEEEEEEeCCCce-eEEEEEEEEcC
Confidence            733221     1222   678899999999999999998 68999999864

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.75  E-value=7.3e-18  Score=112.89  Aligned_cols=119  Identities=13%  Similarity=0.045  Sum_probs=75.5

Q ss_pred             ceeEEEEEecccceeEEeeccc----eeeEEEEEEEEc---CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEe
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK----RKKKKKKKEKRI---PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTR  134 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~----~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~  134 (187)
                      ...|..++.+|.|.|+|.+...    ..+..+.|.|..   +|.+.  ..+ ...+.+|+.+.|.|.+.+.| +.+.|++
T Consensus        59 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~--~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k  134 (196)
T 2d3v_A           59 RFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLS--ALP-SPVVTSGENVTLQCGSRLRF-DRFILTE  134 (196)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEE--C------------CEEEEEESSCC-SEEEEEE
T ss_pred             EEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEE--ccC-CccccCCCcEEEEEEcCCCC-CEEEEEc
Confidence            3446788999999999965422    224567888876   34443  222 24678899999999999988 8999999


Q ss_pred             CCeeCCCCcEE--E-----eCcEEEEecCCCCCCeEEEEEEecCCC----CcceeeEEEEE
Q psy15738        135 KNNNLPGGEYS--Y-----SGNSLTVRHTNRHSAGIYLCVANNMVG----SSAAASIALHV  184 (187)
Q Consensus       135 ~~~~~~~~~~~--~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g----~~~s~~~~l~v  184 (187)
                      ++..+......  .     ....|.|.+++.+|+|.|.|.|.|..+    +..|..+.|.|
T Consensus       135 ~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  195 (196)
T 2d3v_A          135 EGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHILQVWSEPSDLLEIPV  195 (196)
T ss_dssp             C---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTEEEEECCCCCCEEECC
T ss_pred             cCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCCCCccCCCCccEEEEe
Confidence            99876432111  1     126899999999999999999999764    23355666654

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.75  E-value=1.1e-16  Score=117.94  Aligned_cols=123  Identities=24%  Similarity=0.475  Sum_probs=89.3

Q ss_pred             eeEEEEEecc-cceeEEeeccc-----eeeEEEEEEEEcC-------CeeEEec-CCceEEEecCCcEEEEeEeccCCCC
Q psy15738         63 SYILAMEKEE-EERKKKKKRKK-----RKKKKKKKEKRIP-------PRIIYVS-GAGKVEVKKGYSVTLECKADGNPVP  128 (187)
Q Consensus        63 ~~~~~v~~~d-~g~y~c~~~~~-----~~~~~~~l~v~~~-------p~~~~~~-~~~~~~~~~g~~~~l~C~~~g~p~p  128 (187)
                      ..+..+..+| .|.|+|.+...     .....+.|.|...       |.+.... .+....+.+|+.+.|.|.+.|.|.|
T Consensus       173 l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~  252 (404)
T 3p3y_A          173 LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTP  252 (404)
T ss_dssp             EEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCC
T ss_pred             EEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCC
Confidence            4467788889 59999955421     1223355666532       2221111 1123567889999999999999999


Q ss_pred             cEEEEeCCeeCCCCcEEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        129 NITWTRKNNNLPGGEYSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       129 ~~~W~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .+.|++++..+.......  ..+.|.|.++..+|.|.|.|.|.|..|.. +..+.|.|..
T Consensus       253 ~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~  311 (404)
T 3p3y_A          253 DIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI-RHTISVRVKA  311 (404)
T ss_dssp             EEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEEE
T ss_pred             cEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcE-EEEEEEEEeC
Confidence            999999998876554332  35789999999999999999999999987 5788887753

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.75  E-value=2.1e-17  Score=119.10  Aligned_cols=119  Identities=23%  Similarity=0.312  Sum_probs=83.3

Q ss_pred             EEEEEecccc-eeEEeeccce--e-eEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCC-CCcEEEEeCCeeC
Q psy15738         65 ILAMEKEEEE-RKKKKKRKKR--K-KKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNP-VPNITWTRKNNNL  139 (187)
Q Consensus        65 ~~~v~~~d~g-~y~c~~~~~~--~-~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p-~p~~~W~~~~~~~  139 (187)
                      |..++.+|.| .|+|.+....  . ...+.+.+..+|.+...  .....+.+|+.+.|.|.+.|.| .|.+.|++++..+
T Consensus        93 i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~--~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l  170 (329)
T 3oq3_B           93 IANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPE--TYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQEL  170 (329)
T ss_dssp             ESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEE--EEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEEC
T ss_pred             EcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEecc--ccceEEeCCCcEEEEeccCCCCCCceEEEEECCccC
Confidence            7788889999 8999555432  2 22223334445543211  1122346699999999999999 8999999999887


Q ss_pred             C--CCcEEEeCcEEEEecCCCCCCeEEEEEEecC--CCCcc---eeeEEEEEE
Q psy15738        140 P--GGEYSYSGNSLTVRHTNRHSAGIYLCVANNM--VGSSA---AASIALHVL  185 (187)
Q Consensus       140 ~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~--~g~~~---s~~~~l~v~  185 (187)
                      .  ..++......|.|.++..+|.|.|.|.|.|.  .|...   +..+.|.|.
T Consensus       171 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~  223 (329)
T 3oq3_B          171 IIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVI  223 (329)
T ss_dssp             CCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEE
T ss_pred             CCCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEE
Confidence            4  2334445789999999999999999999997  66542   222556664

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.75  E-value=2.8e-17  Score=112.32  Aligned_cols=119  Identities=14%  Similarity=0.117  Sum_probs=76.9

Q ss_pred             eeEEEEEecccceeEEeeccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEecc-CCCCcEEEEeCCeeC-C
Q psy15738         63 SYILAMEKEEEERKKKKKRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADG-NPVPNITWTRKNNNL-P  140 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~-~  140 (187)
                      ..|.+++.+|.|.|+|.+..........+.+..++...  .......+.+|..+.+.|.+.| .|.|.+.|++++... .
T Consensus        85 L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~--~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~  162 (226)
T 4f80_A           85 LRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGS--DLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP  162 (226)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCC--CCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCC
T ss_pred             EEEeeCchHHCeeEEEEEECCCcEEEEEEEEeecccee--cccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcC
Confidence            44778899999999996655444555555554433321  1222456778999999999988 489999999966433 2


Q ss_pred             CCcE--EE-eCc---EEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        141 GGEY--SY-SGN---SLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       141 ~~~~--~~-~~~---~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      ....  .. ..+   .+.+.++..+|.|.|+|.|.|..|.. ...+.|.|
T Consensus       163 ~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~-~~~~~v~v  211 (226)
T 4f80_A          163 TVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGL-EKTASISI  211 (226)
T ss_dssp             CEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTE-EEEEEECC
T ss_pred             CCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCe-EEEEEEEE
Confidence            2211  11 112   23455678899999999999999988 47777665

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.75  E-value=3.1e-17  Score=115.80  Aligned_cols=151  Identities=19%  Similarity=0.225  Sum_probs=106.7

Q ss_pred             ceEEccCCCCe-eEEE-eC-eEee-eccEEEeeccccccceeEEEEEecccceeEEeec---cceeeEEEEEEEE----c
Q psy15738         27 AIMFADSRPES-TFWI-FG-KLIT-SCSYIILATSLLHYLSYILAMEKEEEERKKKKKR---KKRKKKKKKKEKR----I   95 (187)
Q Consensus        27 ~~~~~~~~~~~-~~w~-~~-~~~~-~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v~----~   95 (187)
                      .|.+.+..... ..|+ .+ ..+. ..++.+...+.    ..|..+..+|.|.|+|.+.   ....+..+.|.|.    .
T Consensus       110 ~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~----L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~  185 (289)
T 3ejj_X          110 PCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG----FIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPE  185 (289)
T ss_dssp             CEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTE----EEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCC
T ss_pred             EEEccCCCcceEEEEEecCCeecCCCccEEECCCCC----EEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCC
Confidence            35544444443 6675 23 4333 22333333222    3478889999999999544   4455677888887    5


Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEecc-CCCCcEEEEeCCeeCCCCcEE-------EeCcEEEEecCCCCCCeEEEEE
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADG-NPVPNITWTRKNNNLPGGEYS-------YSGNSLTVRHTNRHSAGIYLCV  167 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~  167 (187)
                      +|.+...  +....+.+|+.+.|.|.+.+ .|.+.+.|++++..+......       ...+.|.|.++..+|.|.|.|.
T Consensus       186 ~p~i~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  263 (289)
T 3ejj_X          186 PPQIKLE--PSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCV  263 (289)
T ss_dssp             CCEEEEE--SSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEE
T ss_pred             CCeEEec--CCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEE
Confidence            6666533  33345678999999999998 688999999999887654221       2356899999999999999999


Q ss_pred             EecCCCCcceeeEEEEE
Q psy15738        168 ANNMVGSSAAASIALHV  184 (187)
Q Consensus       168 ~~n~~g~~~s~~~~l~v  184 (187)
                      |.|..|.. +.++.|.+
T Consensus       264 a~N~~G~~-~~s~~L~~  279 (289)
T 3ejj_X          264 ASNDVGTR-TATMNFQV  279 (289)
T ss_dssp             EECSSCEE-EEEEEEEC
T ss_pred             EEcCCCCc-cccEEEEE
Confidence            99999988 57888765

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.75  E-value=1e-17  Score=112.54  Aligned_cols=145  Identities=14%  Similarity=0.084  Sum_probs=95.3

Q ss_pred             CeeEEEe-Ce--EeeeccEEEeeccc--cccceeEEEEEecccceeEEeec--cceeeEEEEEEEEcCCeeEEecCCceE
Q psy15738         36 ESTFWIF-GK--LITSCSYIILATSL--LHYLSYILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIPPRIIYVSGAGKV  108 (187)
Q Consensus        36 ~~~~w~~-~~--~~~~~~~~~~~~~~--~~~~~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~p~~~~~~~~~~~  108 (187)
                      ....|++ +.  ..+..+..+.....  ......|..++.+|.|.|+|...  ....+..+.|.|..++......   ..
T Consensus        37 ~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~p~~~---~~  113 (202)
T 3bp6_B           37 IRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTR---IL  113 (202)
T ss_dssp             EEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEE---EE
T ss_pred             eEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCCCcceEEEEEEecCCCCcccEE---EE
Confidence            4566776 32  22334444433211  12334477899999999999443  3445677788887655322111   12


Q ss_pred             EEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeC---cEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSG---NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      ...+|+.+.|.|.+.|.|.|.+.|++++..+.........   ..+.+.++...|.|.|.|.|.|..|.. +..+.|.|
T Consensus       114 ~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~v  191 (202)
T 3bp6_B          114 EVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKE-LTSAIIDP  191 (202)
T ss_dssp             ECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEEEEEECTTSCEEEEEEEEECCCTTCCEEEEEEETTTTE-EEEEEECC
T ss_pred             ecCCCCeEEEEEEccccCCceEEEEeCCCCccCceeeCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCccc-ccEEEEEe
Confidence            3467999999999999999999999988654221111111   345677888999999999999999987 57777665

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.74  E-value=1.2e-17  Score=101.15  Aligned_cols=89  Identities=29%  Similarity=0.525  Sum_probs=72.6

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-EE--e--CcEEEEecCCCCCCeEEEEEEec
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-SY--S--GNSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~--~--~~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      ||.+.  ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ..  .  ...|.|.++..+|+|.|.|.|.|
T Consensus        13 pP~f~--~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   90 (107)
T 3knb_B           13 PPCFL--RFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN   90 (107)
T ss_dssp             EEEEE--ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEE--eCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEE
Confidence            56663  345567889999999999999999999999999998865532 21  1  24799999999999999999999


Q ss_pred             CCCCcceeeEEEEEEeC
Q psy15738        171 MVGSSAAASIALHVLCK  187 (187)
Q Consensus       171 ~~g~~~s~~~~l~v~~~  187 (187)
                      ..|.. +..+.|.|..+
T Consensus        91 ~~G~~-~~~~~l~V~~p  106 (107)
T 3knb_B           91 AAGEA-YAAAAVTVLEP  106 (107)
T ss_dssp             TTEEE-EEEEEEEEEC-
T ss_pred             CCCEE-EEEEEEEEEcC
Confidence            99988 57889988753

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.74  E-value=1.1e-16  Score=105.96  Aligned_cols=144  Identities=15%  Similarity=0.170  Sum_probs=93.1

Q ss_pred             CCCCeeEEEE--cCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738          4 DSRPESTFWI--FGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus         4 ~p~p~i~w~~--~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      .|.|.|.|++  +|.+|.....+.  ..+               .+..++.+..++.+.    |..++.+|+|.|+|...
T Consensus        28 ~~~~~i~W~k~~~~~~i~~~~~~~--~~~---------------~~~~R~~~~~ngsL~----I~~v~~~DsG~Y~c~~~   86 (182)
T 1hnf_A           28 DDIDDIKWEKTSDKKKIAQFRKEK--ETF---------------KEKDTYKLFKNGTLK----IKHLKTDDQDIYKVSIY   86 (182)
T ss_dssp             SSEEEEEEEEGGGCCEEEEECGGG--CEE---------------ESCTTEEECTTSCEE----ECSCCGGGCEEEEEEEE
T ss_pred             CcCCEEEEEECCCCcEEEEEeCcc--CCC---------------CCCCeEEECCCCCEE----ECCCChhhCEEEEEEEE
Confidence            4567888988  887764321111  000               123566666555555    89999999999999543


Q ss_pred             c--ce--eeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCC
Q psy15738         82 K--KR--KKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTN  157 (187)
Q Consensus        82 ~--~~--~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~  157 (187)
                      .  +.  ....+.|.|..+...     | ... ..+..+.|.|.+.+.|.|.+.|++++..+ .    .....+.+.. .
T Consensus        87 n~~g~~~~~~~~~L~V~~~~~~-----P-~i~-~~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~----~~~~~i~~~~-~  153 (182)
T 1hnf_A           87 DTKGKNVLEKIFDLKIQERVSK-----P-KIS-WTCINTTLTCEVMNGTDPELNLYQDGKHL-K----LSQRVITHKW-T  153 (182)
T ss_dssp             ETTSCEEEEEEEEEEEECCCCC-----C-EEE-EETTTTEEEEECSSCSSCEEEEEESSCEE-E----EESSCEEEEC-C
T ss_pred             eCCCceeEEEEEEEEEcCcCCC-----C-EEE-EccCcEEEEeEccCCCCCEEEEEECCEEC-C----CCCcEEEEec-c
Confidence            2  22  235667888754211     1 111 13347899999999999999999999876 1    1233444433 4


Q ss_pred             CCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        158 RHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       158 ~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      ..|.|.|.|.|.|.++... ....+
T Consensus       154 ~~d~G~Y~C~a~N~~~~~~-s~~~~  177 (182)
T 1hnf_A          154 TSLSAKFKCTAGNKVSKES-SVEPV  177 (182)
T ss_dssp             SCEEEEEEEEEECSSCEEE-EEEEE
T ss_pred             cCCCcEEEEEEEeCCCCcE-Eccee
Confidence            6889999999999999873 44433

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.74  E-value=5.5e-18  Score=118.49  Aligned_cols=136  Identities=15%  Similarity=0.157  Sum_probs=97.2

Q ss_pred             CCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeecc---cee---eEEEEEEEEcCCeeEEecCCce
Q psy15738         34 RPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRK---KRK---KKKKKKEKRIPPRIIYVSGAGK  107 (187)
Q Consensus        34 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~---~~~---~~~~~l~v~~~p~~~~~~~~~~  107 (187)
                      ......| +|..+...       + ......+..+...|.|.|+|.+..   +..   +..+.|.|..+|.+.....+..
T Consensus       124 p~~~i~W-~g~~~~~~-------~-~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~  194 (265)
T 2oz4_A          124 PRAKVTL-NGVPAQPL-------G-PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGN  194 (265)
T ss_dssp             TTSEEEE-SSCSSSCC-------S-SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSE
T ss_pred             CCCEEEE-CCEEccCC-------C-CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCc
Confidence            6677888 66544211       1 111222556666777889995531   222   3678899998888754444556


Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEeC
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK  187 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~~  187 (187)
                      ..+.+|+.+.|.|.+.|.|.|.+.|++++....      ..+.+  ..+..+|+|.|.|.|.|..|.. +..+.|.|.++
T Consensus       195 ~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~------~~g~~--~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~p  265 (265)
T 2oz4_A          195 WTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL------PIGES--VTVTRDLEGTYLCRARSTQGEV-TREVTVNVLSP  265 (265)
T ss_dssp             EEEETTCEECCCCCCEEESCCEEEEEETTTEEC------CTTSC--EECCGGGCEEEEEEEEETTEEE-EEEEEEEEECC
T ss_pred             cEEcCCCeEEEEeECccCCCCeEEEEECCcccC------CCCcE--EEeehhhCeEEEEEEECCCCcE-EEEEEEEEecC
Confidence            778999999999999999999999999997221      11222  2478899999999999999988 68999999864

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.74  E-value=9.4e-17  Score=123.74  Aligned_cols=122  Identities=12%  Similarity=0.068  Sum_probs=90.7

Q ss_pred             eeEEEEEecccceeEEee-ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEec----cCCCCcEEEEeCCe
Q psy15738         63 SYILAMEKEEEERKKKKK-RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKAD----GNPVPNITWTRKNN  137 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~-~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~----g~p~p~~~W~~~~~  137 (187)
                      +.|..+..+|.|.|+|.+ ..+..+..+.|.|..+|.....  +....+..|+.+.|.|.+.    +.|.|.+.|+++|.
T Consensus       408 L~I~~v~~~D~G~Y~C~an~~g~~~~~~~l~V~~~~p~~~~--~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~  485 (585)
T 2ocw_A          408 VILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKV--PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGC  485 (585)
T ss_pred             EEECCCChhhCEEEEEcccCCCccceeEEEEEecCcccccc--CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCc
Confidence            446788899999999954 3344556778888764433212  4456788999999999986    66788999999997


Q ss_pred             eCCCCc-------EEE-----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        138 NLPGGE-------YSY-----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       138 ~~~~~~-------~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .+....       ...     ....|.|.++..+|+|.|.|.|.|..|...+..+.|.|..
T Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~  546 (585)
T 2ocw_A          486 QALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEE  546 (585)
T ss_pred             eeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEe
Confidence            653221       111     1148999999999999999999999997755557888764

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.74  E-value=1.9e-17  Score=111.45  Aligned_cols=123  Identities=12%  Similarity=0.101  Sum_probs=86.9

Q ss_pred             eeEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCC---CcEEEEeCCe
Q psy15738         63 SYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPV---PNITWTRKNN  137 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~---p~~~W~~~~~  137 (187)
                      ..|..++.+|.|.|+|.+  .....+..+.|.|..+|........  ..+.+|+.+.|.|.+.|.++   +.+.|++++.
T Consensus        56 L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~~~~~~--~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~  133 (202)
T 1vca_A           56 LTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLS--GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDH  133 (202)
T ss_dssp             EEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBCCSCCEEEES--SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTE
T ss_pred             EEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEeCCCCCEeCCc--eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCe
Confidence            346778899999999944  3445567889999887754322222  35789999999999988643   3689999998


Q ss_pred             eCCCCcE---------EEeCcEEEEecCCCCCCeEEEEEEecCCCCc------ceeeEEEEEEeC
Q psy15738        138 NLPGGEY---------SYSGNSLTVRHTNRHSAGIYLCVANNMVGSS------AAASIALHVLCK  187 (187)
Q Consensus       138 ~~~~~~~---------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~------~s~~~~l~v~~~  187 (187)
                      .+.....         ......|.+..+...|.|.|.|.|.|..+..      .+.++.|.|+|+
T Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~  198 (202)
T 1vca_A          134 LMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYIS  198 (202)
T ss_dssp             EEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECC
T ss_pred             ECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecC
Confidence            6532110         1122345677777778999999999988763      246778888774

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.74  E-value=1.8e-16  Score=116.55  Aligned_cols=120  Identities=19%  Similarity=0.309  Sum_probs=85.1

Q ss_pred             eeEEEEEecccc---eeEEeeccceeeEEEEEEE-----Ec----------CCeeEEecCCceEEEecCCcEEEEeEecc
Q psy15738         63 SYILAMEKEEEE---RKKKKKRKKRKKKKKKKEK-----RI----------PPRIIYVSGAGKVEVKKGYSVTLECKADG  124 (187)
Q Consensus        63 ~~~~~v~~~d~g---~y~c~~~~~~~~~~~~l~v-----~~----------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g  124 (187)
                      ..|..+...|.|   .|+|.+..........+.+     ..          +|.+    .+....+.+|+.+.|.|.+.|
T Consensus       163 L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~G~~v~l~C~~~g  238 (395)
T 1bih_A          163 LYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY----VSKDMMAKAGDVTMIYCMYGS  238 (395)
T ss_dssp             EEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE----ECCSEEEETTSCEEEEEEEEC
T ss_pred             EEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee----cCCceEEECCCcEEEEEEecc
Confidence            447788889999   9999554333222222111     11          1111    133467889999999999999


Q ss_pred             CCCCcEEEEeCCeeCCCC---cEEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        125 NPVPNITWTRKNNNLPGG---EYSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       125 ~p~p~~~W~~~~~~~~~~---~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .|.|.+.|++++..+...   +...    ....|.|.++..+|.|.|.|.|.|..|...+..+.|.|..
T Consensus       239 ~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~  307 (395)
T 1bih_A          239 NPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS  307 (395)
T ss_dssp             SSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEE
T ss_pred             CCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEc
Confidence            999999999999877543   1111    1237999999999999999999999998754477887753

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.73  E-value=6.8e-17  Score=108.27  Aligned_cols=119  Identities=15%  Similarity=0.101  Sum_probs=83.8

Q ss_pred             eeEEEEEecccceeEEeeccc-----eeeEEEEEEEEc---CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEe
Q psy15738         63 SYILAMEKEEEERKKKKKRKK-----RKKKKKKKEKRI---PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTR  134 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~-----~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~  134 (187)
                      ..|..+..+|+|.|+|.+...     ..+..+.|.|..   +|.+...  + ...+.+|+.+.|.|.+.+. .+.+.|++
T Consensus        60 L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~--~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k  135 (198)
T 1ugn_A           60 FPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQ--P-SPVVNSGGNVTLQCDSQVA-FDGFILCK  135 (198)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEE--S-CSEEETTCCEEEEEECSSC-CSEEEEEE
T ss_pred             EEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccC--C-ccccCCCCcEEEEEecCCC-CcEEEEEE
Confidence            447789999999999955432     335678888886   3444322  2 2467899999999999988 78999999


Q ss_pred             CCeeCCCCcEE----E---eCcEEEEecCCCCCCeEEEEEEecCCCCc----ceeeEEEEEE
Q psy15738        135 KNNNLPGGEYS----Y---SGNSLTVRHTNRHSAGIYLCVANNMVGSS----AAASIALHVL  185 (187)
Q Consensus       135 ~~~~~~~~~~~----~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~----~s~~~~l~v~  185 (187)
                      ++..+......    .   ....|.|.++..+|+|.|.|.|.|..+..    .|..+.|.|.
T Consensus       136 ~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          136 EGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             C------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             CCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            99876433211    1   13689999999999999999999987632    2677777774

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.73  E-value=2.5e-17  Score=112.20  Aligned_cols=121  Identities=15%  Similarity=0.139  Sum_probs=87.2

Q ss_pred             eeEEEEEecccceeEEeeccc----eeeEEEEEEEEc---CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeC
Q psy15738         63 SYILAMEKEEEERKKKKKRKK----RKKKKKKKEKRI---PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRK  135 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~----~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~  135 (187)
                      ..|..++.+|+|.|+|.+...    ..+..+.|.|..   +|.+..  .+ ...+.+|+.+.|.|.+.+.|.+.+.|+++
T Consensus        66 L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~--~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~  142 (218)
T 1uct_A           66 FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSA--DR-GLVLMPGENISLTCSSAHIPFDRFSLAKE  142 (218)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEE--SS-CSEECTTCCCEEEEECSSSCCSEEEEEET
T ss_pred             EEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEe--CC-CCccCCCCCEEEEEeCCCCCCCEEEEEEC
Confidence            447789999999999955432    334567888865   344432  22 24678999999999777778889999999


Q ss_pred             CeeCCCCcEE-EeCcEEEEecCCCCCCeEEEEEEecCCC----CcceeeEEEEEEe
Q psy15738        136 NNNLPGGEYS-YSGNSLTVRHTNRHSAGIYLCVANNMVG----SSAAASIALHVLC  186 (187)
Q Consensus       136 ~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g----~~~s~~~~l~v~~  186 (187)
                      |..+...... .....|.|.+++.+|+|.|.|.|.|...    +..|..+.|.|..
T Consensus       143 g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  198 (218)
T 1uct_A          143 GELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTD  198 (218)
T ss_dssp             TCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred             CCcccccccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence            9876543221 1357899999999999999999998642    2336777777753

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.73  E-value=6.2e-17  Score=108.76  Aligned_cols=116  Identities=14%  Similarity=0.084  Sum_probs=81.2

Q ss_pred             eeEEEEEecccceeEEeecc-------ceeeEEEEEEEEcC---CeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEE
Q psy15738         63 SYILAMEKEEEERKKKKKRK-------KRKKKKKKKEKRIP---PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITW  132 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~-------~~~~~~~~l~v~~~---p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W  132 (187)
                      ..|..++.+|+|.|+|.+..       ...+..+.|.|...   |.+.....   ..+.+|+.+.|.|.+.+ +.+.+.|
T Consensus        65 l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~---~~v~~G~~v~L~C~~~~-~~~~~~w  140 (201)
T 1nkr_A           65 FSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG---PTVLAGENVTLSCSSRS-SYDMYHL  140 (201)
T ss_dssp             EEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC---SEECTTCEEEEEEEESS-CCSEEEE
T ss_pred             EEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCC---CccCCCCeEEEEEeCCC-CCceEEE
Confidence            34778899999999996532       23356678888753   44443222   35789999999999986 5678999


Q ss_pred             EeCCeeCCCCc--EEE----eCcEEEEecCCCCCCeEEEEEEecCC----CCcceeeEEEEE
Q psy15738        133 TRKNNNLPGGE--YSY----SGNSLTVRHTNRHSAGIYLCVANNMV----GSSAAASIALHV  184 (187)
Q Consensus       133 ~~~~~~~~~~~--~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~----g~~~s~~~~l~v  184 (187)
                      +++|..+....  ...    ....|.|.+++  |+|.|.|.|.+..    .+..|..+.|.|
T Consensus       141 ~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~~~~~~s~~S~~~~l~V  200 (201)
T 1nkr_A          141 SREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHDSPYEWSKSSDPLLVSV  200 (201)
T ss_dssp             EETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEETTEEEEECCCCCCEEEEE
T ss_pred             EECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcCCCCCcCCCCCCCEEEEe
Confidence            99997664321  111    14679999998  9999999999653    223366777765

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.72  E-value=2.4e-16  Score=113.28  Aligned_cols=125  Identities=14%  Similarity=0.157  Sum_probs=93.3

Q ss_pred             cceeEEEEEecccceeEEe-ec--cceeeEEEEEEEEcCCeeEEecCCceEEEecC---CcEEEEeE-eccCCCCcEEEE
Q psy15738         61 YLSYILAMEKEEEERKKKK-KR--KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKG---YSVTLECK-ADGNPVPNITWT  133 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~-~~--~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g---~~~~l~C~-~~g~p~p~~~W~  133 (187)
                      ....|..++.+|.|.|+|. ..  ....+..+.|.|..+|.+.....+....+.+|   +.+.|.|. +.+.|.|.+.|+
T Consensus        92 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~  171 (331)
T 3u83_A           92 GTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWE  171 (331)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEE
T ss_pred             ceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEE
Confidence            4455889999999999995 32  45677888999999998765545556677888   77999998 889999999999


Q ss_pred             eCCeeCC-------CCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        134 RKNNNLP-------GGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       134 ~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      +++....       ..........|.|.++...|.|.|.|.|.|..|.. +..+.|.|.+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~l~V~~  230 (331)
T 3u83_A          172 TRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRF-KESLTLNVQY  230 (331)
T ss_dssp             ESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEE-EEEEECCEEE
T ss_pred             cCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcc-eeeEEEEEec
Confidence            9632111       11111223568888889999999999999998876 5777776653

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.72  E-value=4.8e-17  Score=110.08  Aligned_cols=116  Identities=16%  Similarity=0.189  Sum_probs=82.9

Q ss_pred             ceeEEEEEecccceeEEeeccc-----eeeEEEEEEEE----cCCeeEEecCCceEEEecCCcEEEEeEeccC-CC-CcE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK-----RKKKKKKKEKR----IPPRIIYVSGAGKVEVKKGYSVTLECKADGN-PV-PNI  130 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~-----~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-p~~  130 (187)
                      ...|.+++.+|.|.|+|.+...     .......|.|.    .+|.+......  ..+..|+.+.|.|.+.|. |+ +.+
T Consensus        71 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~--~~~~~g~~v~l~C~~~g~~p~~~~v  148 (213)
T 3mj8_L           71 TLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPS--SEELKTNQATLVCMINGFYPADVAV  148 (213)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCC--HHHHTTTEEEEEEEEEEEBSSCCEE
T ss_pred             EEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCC--cccccCCcEEEEEEeeceeCCCeEE
Confidence            3447889999999999954432     44667788888    56666533221  223379999999999986 33 389


Q ss_pred             EEEeCCeeCCCCc----------EEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeE
Q psy15738        131 TWTRKNNNLPGGE----------YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASI  180 (187)
Q Consensus       131 ~W~~~~~~~~~~~----------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~  180 (187)
                      .|+++|..+....          .....+.|.|.++..+|.|.|.|.|.|..+.. ...+
T Consensus       149 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~  207 (213)
T 3mj8_L          149 TWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTV-EKSL  207 (213)
T ss_dssp             EEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEE-EEEE
T ss_pred             EEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccE-Eeee
Confidence            9999998875431          11123568899999999999999999987655 3443

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.72  E-value=1.3e-16  Score=107.92  Aligned_cols=120  Identities=15%  Similarity=0.148  Sum_probs=80.3

Q ss_pred             ceeEEEEEecccceeEEeeccce------eeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccC----CCCcEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKKR------KKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGN----PVPNIT  131 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~~------~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~----p~p~~~  131 (187)
                      ...|..++.+|.|.|+|......      .+..+.|.|..++.......+.  .+.+|+.+.|.|.+.+.    |.|.+.
T Consensus        83 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~  160 (214)
T 2zg1_A           83 SLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE--PLESGRPTRLSCSLPGSCEAGPPLTFS  160 (214)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--C--CCCTTCCEEEEEECTTCCSCSSCCEEE
T ss_pred             EEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCc--cccCCCeEEEEEEeccCCCCCCCceEE
Confidence            45588999999999999443221      1246788887644221111121  25689999999999874    788999


Q ss_pred             EEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcc-eeeEEEEE
Q psy15738        132 WTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSA-AASIALHV  184 (187)
Q Consensus       132 W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-s~~~~l~v  184 (187)
                      |++++....... ....+.|.|..+..+|.|.|.|.|.|..+... +..+.|.|
T Consensus       161 W~~~~~~~~~~~-~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V  213 (214)
T 2zg1_A          161 WTGNALSPLDPE-TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV  213 (214)
T ss_dssp             EESSTTSSSCSS-CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred             EeCCCCccCCCC-ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence            999986543222 13457899999988999999999999865431 34554443

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.72  E-value=1.8e-16  Score=120.74  Aligned_cols=152  Identities=17%  Similarity=0.211  Sum_probs=105.4

Q ss_pred             eEEccCCCCeeEEEe--CeEeee-ccEEEeeccccccceeEEEEEecccc-eeEEeecc---ceeeEEEEEEEE----cC
Q psy15738         28 IMFADSRPESTFWIF--GKLITS-CSYIILATSLLHYLSYILAMEKEEEE-RKKKKKRK---KRKKKKKKKEKR----IP   96 (187)
Q Consensus        28 ~~~~~~~~~~~~w~~--~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~d~g-~y~c~~~~---~~~~~~~~l~v~----~~   96 (187)
                      |.+.+.......|++  +..+.. .++.+...+    ...|..+..+|.| .|+|.+..   ...+..+.|.|.    .+
T Consensus       136 C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~----~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~  211 (524)
T 2ec8_A          136 CPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKA----GIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAV  211 (524)
T ss_dssp             CCBSCCCCSCEEEECSSSCCCCSSCEEEEETTT----EEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSC
T ss_pred             CcCCCCccceEEEEccCCcCcCCCCceeECCCc----cEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCC
Confidence            333344445666753  344432 223333222    3458899999999 99995542   223457888886    56


Q ss_pred             CeeEEecCCceEEEecCCcEEEEeEeccCCCCc-EEEEeCCeeC--CCCcE--------EEeCcEEEEecCCCCCCeEEE
Q psy15738         97 PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPN-ITWTRKNNNL--PGGEY--------SYSGNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus        97 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~--~~~~~--------~~~~~~l~i~~~~~~d~g~y~  165 (187)
                      |.+.  ..+....+.+|+.+.|.|.+.|.|.|. +.|++++..+  .....        ....+.|.|.++..+|.|.|.
T Consensus       212 p~i~--~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~  289 (524)
T 2ec8_A          212 PVVS--VSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFM  289 (524)
T ss_dssp             CEEE--CSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEE
T ss_pred             CcEE--ecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEE
Confidence            6664  334456789999999999999999887 9999999773  22111        123468999999999999999


Q ss_pred             EEEecCCCCcceeeEEEEEEe
Q psy15738        166 CVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       166 C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      |.|.|..|.. +..+.|.|..
T Consensus       290 C~a~n~~g~~-~~~~~l~V~~  309 (524)
T 2ec8_A          290 CYANNTFGSA-NVTTTLEVVD  309 (524)
T ss_dssp             EEEECSSCEE-EEEEEEEEES
T ss_pred             EEEEecCCce-EEEEEEEEec
Confidence            9999999988 4688887753

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.72  E-value=6.6e-16  Score=119.04  Aligned_cols=122  Identities=20%  Similarity=0.260  Sum_probs=92.3

Q ss_pred             ceeEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCC-CCcEEEEeCCee
Q psy15738         62 LSYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNP-VPNITWTRKNNN  138 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p-~p~~~W~~~~~~  138 (187)
                      .+.|..++.+|.|.|+|.+  .....+..+.|.|..+|.+.  ..+....+.+|+.+.|.|.+.+.+ ++.+.|++++..
T Consensus        76 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~--~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~  153 (585)
T 2ocw_A           76 VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLL--NDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGL  153 (585)
T ss_pred             EEEECCCCcccCEEEEEEcccCCCCceEEEEEEEecCcccc--CCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCC
Confidence            3447789999999999954  33445677899999888774  345567789999999999998765 567999998753


Q ss_pred             CC--------------CCcEEE-e-C-----cEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        139 LP--------------GGEYSY-S-G-----NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       139 ~~--------------~~~~~~-~-~-----~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      ..              ..+... . .     ..|.|.++...|.|.|.|.|.|..|.. +..+.|.|..
T Consensus       154 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~  221 (585)
T 2ocw_A          154 YPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSN-KKNADLQVLK  221 (585)
T ss_pred             CceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccc-cceEEEEEcc
Confidence            21              112221 1 1     179999999999999999999999887 5788887753

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.72  E-value=5.1e-16  Score=106.77  Aligned_cols=124  Identities=11%  Similarity=0.094  Sum_probs=82.1

Q ss_pred             ccEEEeeccccccceeEEEEEecccceeEEeeccce-------eeEEEEEEEEcCCe----------eEEecCCceEEEe
Q psy15738         49 CSYIILATSLLHYLSYILAMEKEEEERKKKKKRKKR-------KKKKKKKEKRIPPR----------IIYVSGAGKVEVK  111 (187)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~~~-------~~~~~~l~v~~~p~----------~~~~~~~~~~~~~  111 (187)
                      .++.+.........+.|..++.+|+|.|+|.+....       ......|.|...+.          ......+....+.
T Consensus        61 ~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~  140 (238)
T 2p1y_A           61 DGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVW  140 (238)
T ss_dssp             TTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEE
T ss_pred             ceEEEEccCCceEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEe
Confidence            344444322223345588899999999999554321       12345777765542          0112234456788


Q ss_pred             cCCcEEEEeEeccCCCCcEEEEeCCe--eC-------------CCCcEEEe------CcEEEEecCCCCCCeEEEEEEec
Q psy15738        112 KGYSVTLECKADGNPVPNITWTRKNN--NL-------------PGGEYSYS------GNSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-------------~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      +|+.+.|.|.+.+.|.|.+.|++++.  ..             ...+....      ...|.|.++..+|+|.|.|.|.|
T Consensus       141 ~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  220 (238)
T 2p1y_A          141 EGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAID  220 (238)
T ss_dssp             TTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             CCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEee
Confidence            99999999999999999999999642  10             01122211      24799999999999999999999


Q ss_pred             CC
Q psy15738        171 MV  172 (187)
Q Consensus       171 ~~  172 (187)
                      ..
T Consensus       221 ~~  222 (238)
T 2p1y_A          221 TN  222 (238)
T ss_dssp             TT
T ss_pred             CC
Confidence            74

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.72  E-value=1e-16  Score=112.05  Aligned_cols=117  Identities=18%  Similarity=0.244  Sum_probs=83.4

Q ss_pred             cceeEEEEEecccceeEEeecc----ceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEe---ccCCCCcEEEE
Q psy15738         61 YLSYILAMEKEEEERKKKKKRK----KRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKA---DGNPVPNITWT  133 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~~~~----~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~---~g~p~p~~~W~  133 (187)
                      ..+.|..++.+|.|.|+|....    ......+.|.|.  +     ..+....+..|+.+.|.|.+   .+.|.|.+.|+
T Consensus        84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~-----~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~  156 (268)
T 3mj6_A           84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--P-----EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWM  156 (268)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--C-----CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEE
T ss_pred             EEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--c-----cCCCccccccCCcEEEEEEecCCCCCCccceEEE
Confidence            3445889999999999995532    223445555554  2     12345678899999999999   67789999999


Q ss_pred             eCCeeC-CCC----------------------cEE------EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        134 RKNNNL-PGG----------------------EYS------YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       134 ~~~~~~-~~~----------------------~~~------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      +++... ...                      +..      .....|.|.++..+|+|.|.|.|.|..|.. +..+.|.|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V  235 (268)
T 3mj6_A          157 FSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLES-RKTIVLHV  235 (268)
T ss_dssp             EECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             ecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceE-EEEEEEEE
Confidence            943211 100                      000      124679999999999999999999988876 57888877


Q ss_pred             E
Q psy15738        185 L  185 (187)
Q Consensus       185 ~  185 (187)
                      .
T Consensus       236 ~  236 (268)
T 3mj6_A          236 V  236 (268)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.71  E-value=7.3e-17  Score=106.98  Aligned_cols=117  Identities=15%  Similarity=0.198  Sum_probs=82.9

Q ss_pred             eEEEEEecccceeEEeeccc----eeeEEEEEEEEc---CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCC
Q psy15738         64 YILAMEKEEEERKKKKKRKK----RKKKKKKKEKRI---PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKN  136 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~~~----~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~  136 (187)
                      .|..++.+|.|.|+|.+...    ..+..+.|.|..   +|.+....   ...+.+|+.+.|.|.+.+.| +.+.|++++
T Consensus        55 ~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p---~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g  130 (184)
T 2gi7_A           55 FIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP---GPAVSSGGDVTLQCQTRYGF-DQFALYKEG  130 (184)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEEC---CCSSCCTTCEEEEEECSSCC-CEEEEEECC
T ss_pred             EECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCC---CceecCCCcEEEEEEcCCCC-cEEEEEECC
Confidence            37788999999999955432    334567788853   34443222   23467899999999987654 699999999


Q ss_pred             eeCCCCcE-EEeCcEEEEecCCCCCCeEEEEEEecCCCC----cceeeEEEEE
Q psy15738        137 NNLPGGEY-SYSGNSLTVRHTNRHSAGIYLCVANNMVGS----SAAASIALHV  184 (187)
Q Consensus       137 ~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~----~~s~~~~l~v  184 (187)
                      ..+..... ......|.|.++..+|+|.|.|.|.|..+.    ..|..+.|.|
T Consensus       131 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  183 (184)
T 2gi7_A          131 DPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELVV  183 (184)
T ss_dssp             CCTTSCCCCEEEEESSSEEEETTCCSEEEEEEEECTTSTTBCCCCCCCEEEEC
T ss_pred             CcCcceecCCCceEEEEEccCCccCCeEEEEEEEeCCCCcccCCCCCcEEEEe
Confidence            87654321 223467899999999999999999997543    2355666654

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.71  E-value=5.2e-17  Score=114.76  Aligned_cols=121  Identities=19%  Similarity=0.235  Sum_probs=89.9

Q ss_pred             eeEEEEEecccceeEEeec---cceeeEEEEEEEEc----CCeeEEecCCceEEEecCCcEEEEeEeccCCC-CcEEEEe
Q psy15738         63 SYILAMEKEEEERKKKKKR---KKRKKKKKKKEKRI----PPRIIYVSGAGKVEVKKGYSVTLECKADGNPV-PNITWTR  134 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~~~W~~  134 (187)
                      ..|..+...|.|.|+|.+.   +...+..+.|.|..    +|.+.....  ...+..|+.+.|.|.+.+.|+ +.+.|++
T Consensus       146 L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~--~~~~~~g~~v~l~C~~~~~~~~~~~~w~~  223 (292)
T 4dkd_C          146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPA--ELVRIRGEAAQIVCSASSVDVNFDVFLQH  223 (292)
T ss_dssp             CEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESS--CBCCCSSSCEEEEEEEEESSSCCEEECCB
T ss_pred             EEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCC--ceeEecCCCEEEEEEecCCCCceEEEEeC
Confidence            4477889999999999554   22345578888886    777754332  344568999999999998775 4578888


Q ss_pred             CCeeCCCCcEE-------EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        135 KNNNLPGGEYS-------YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       135 ~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      ++..+......       .....|.|.++..+|.|.|.|.|.|..|.. +..+.|.|..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~  281 (292)
T 4dkd_C          224 NNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKH-STSMFFRVVE  281 (292)
T ss_dssp             SSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEE-EEEEEECC--
T ss_pred             CCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCc-eeEEEEEEee
Confidence            88765433221       123579999999999999999999999987 6888887754

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.71  E-value=1.2e-16  Score=95.65  Aligned_cols=87  Identities=23%  Similarity=0.562  Sum_probs=70.6

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc---EEE----eCcEEEEecCCCCCCeEEEEEE
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---YSY----SGNSLTVRHTNRHSAGIYLCVA  168 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~---~~~----~~~~l~i~~~~~~d~g~y~C~~  168 (187)
                      ||.+  ...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....   ...    ....|.|.++..+|+|.|.|.|
T Consensus         5 PP~i--~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 3knb_A            5 PPKI--EALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL   82 (100)
T ss_dssp             EEEE--CCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEE--EeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEE
Confidence            4444  344556788999999999999999999999999999885442   222    1247999999999999999999


Q ss_pred             ecCCCCcceeeEEEEEE
Q psy15738        169 NNMVGSSAAASIALHVL  185 (187)
Q Consensus       169 ~n~~g~~~s~~~~l~v~  185 (187)
                      .|..|.. +..+.|.|.
T Consensus        83 ~N~~G~~-~~~~~l~V~   98 (100)
T 3knb_A           83 GNEFGSD-SATVNIHIR   98 (100)
T ss_dssp             EETTEEE-EEEEEEEEE
T ss_pred             EECCCEE-EEEEEEEEE
Confidence            9999988 678888874

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.71  E-value=3.1e-17  Score=112.20  Aligned_cols=124  Identities=16%  Similarity=0.236  Sum_probs=87.1

Q ss_pred             eeEEEEEecccceeEEee--cc-ceeeEEEEEEEEcCCeeEE-ecCCceEEEecCCcE-EEEeEe-ccCCCCcEEEEeCC
Q psy15738         63 SYILAMEKEEEERKKKKK--RK-KRKKKKKKKEKRIPPRIIY-VSGAGKVEVKKGYSV-TLECKA-DGNPVPNITWTRKN  136 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~--~~-~~~~~~~~l~v~~~p~~~~-~~~~~~~~~~~g~~~-~l~C~~-~g~p~p~~~W~~~~  136 (187)
                      ..|..++.+|.|.|+|..  .. ...+..+.|.|..+|.... ...+....+.+|+.+ .|.|.+ .|.|.|.+.|++++
T Consensus        79 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~  158 (231)
T 2pet_A           79 LVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNG  158 (231)
T ss_dssp             EEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETT
T ss_pred             EEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECC
Confidence            447899999999999953  32 5667788999987765321 222333445678877 999999 89999999999999


Q ss_pred             eeCCCCc-----EEEe-------------CcEEEEecCCCCCCeEEEEEEec-----CCCCcceeeEEEEEEe
Q psy15738        137 NNLPGGE-----YSYS-------------GNSLTVRHTNRHSAGIYLCVANN-----MVGSSAAASIALHVLC  186 (187)
Q Consensus       137 ~~~~~~~-----~~~~-------------~~~l~i~~~~~~d~g~y~C~~~n-----~~g~~~s~~~~l~v~~  186 (187)
                      ..+....     ....             .+.|.+......|.|.|.|.|.|     ..|...+..+.|.|+|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V~y  231 (231)
T 2pet_A          159 QRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLHY  231 (231)
T ss_dssp             EECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCCCC
T ss_pred             ccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEEeC
Confidence            8875443     1111             14577764445569999999999     4455235677777654

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.71  E-value=6.2e-16  Score=107.55  Aligned_cols=114  Identities=18%  Similarity=0.205  Sum_probs=91.4

Q ss_pred             EEEEEecccceeEEeeccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEe-ccCCCCcEEEEeCCeeCCCCc
Q psy15738         65 ILAMEKEEEERKKKKKRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKA-DGNPVPNITWTRKNNNLPGGE  143 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~  143 (187)
                      |..+..+|.|.|+|.+.....+..+.|.|..++......   ...+.+|+.+.|.|.+ .+.|.+.+.|++++..+..  
T Consensus        52 i~~~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~~~~~~~---~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~--  126 (262)
T 3rjd_A           52 ITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVS---SRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKF--  126 (262)
T ss_dssp             ESSCCGGGCEEEEEEESSSCCCCCEEEEEECSSEEEEES---CSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEE--
T ss_pred             EecCCcccCeEEEEEEecCCccccEEEEEeccceEecCC---CeEEecCCeEEEEEEccCCCCCceEEEEECCccccc--
Confidence            677888999999998777777788899998777543222   3467899999999999 7778889999999976532  


Q ss_pred             EEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        144 YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       144 ~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                       ......|.|.++...|.|.|.|.+.|..+.. +..+.|.|.
T Consensus       127 -~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~-~~~~~l~V~  166 (262)
T 3rjd_A          127 -FHWNSNLTILKTNISHNGTYHCSGMGKHRYT-SAGISVTVK  166 (262)
T ss_dssp             -EEECCCEEESSCCGGGCEEEEEEEESSSEEE-EECEEEEEE
T ss_pred             -cCCCCeEEEEECChhhCEEEEEEEeCCCCcc-ccceEEEec
Confidence             1235789999999999999999999998665 577777775

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.71  E-value=2.4e-16  Score=104.85  Aligned_cols=119  Identities=15%  Similarity=0.104  Sum_probs=85.1

Q ss_pred             eeEEEEEecccceeEEeeccc----eeeEEEEEEEEc---CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeC
Q psy15738         63 SYILAMEKEEEERKKKKKRKK----RKKKKKKKEKRI---PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRK  135 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~----~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~  135 (187)
                      ..|..++.+|+|.|+|.+...    ..+..+.|.|..   +|.+....   ...+.+|+.+.|.|.+.+ +++.+.|+++
T Consensus        59 L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p---~~~v~~G~~v~L~C~~~~-~~~~~~w~k~  134 (188)
T 1oll_A           59 FYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP---GPEVISGEKVTFYCRLDT-ATSMFLLLKE  134 (188)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEES---CSEEETTCEEEEEEECSS-SCSEEEEEEE
T ss_pred             EEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECC---CCccccCCEEEEEEEcCC-CCCEEEEEEC
Confidence            346788999999999965422    235667888874   45554222   245789999999999876 4578999999


Q ss_pred             CeeCCCCcEE-EeCcEEEEecCCCCCCeEEEEEEecCCC--CcceeeEEEEEE
Q psy15738        136 NNNLPGGEYS-YSGNSLTVRHTNRHSAGIYLCVANNMVG--SSAAASIALHVL  185 (187)
Q Consensus       136 ~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g--~~~s~~~~l~v~  185 (187)
                      +..+...... .....|.|.+++.+|+|.|.|.|.|...  ...|..+.|.|.
T Consensus       135 g~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          135 GRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             SSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             CccccccccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            9765431111 1246899999999999999999998642  334778888775

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.71  E-value=2e-16  Score=126.21  Aligned_cols=121  Identities=22%  Similarity=0.356  Sum_probs=94.2

Q ss_pred             eeEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCC
Q psy15738         63 SYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLP  140 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~  140 (187)
                      ..|..+..+|.|.|+|.+  ..+.....+.|.|..+|.+.   ......+..|+.+.|.|.+.|.|.+.+.|++++..+.
T Consensus       492 L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~---~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~  568 (816)
T 3dmk_A          492 LNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIR---QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALP  568 (816)
T ss_dssp             EEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEEC---CCCCEEEETTCCEEEECCEECSSEEEEEEEETTEESC
T ss_pred             EEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeE---ccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcc
Confidence            336678888999999944  34556778889998888553   2334567899999999999999999999999999876


Q ss_pred             CCcE--EEeCcEEEEecCC-CCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        141 GGEY--SYSGNSLTVRHTN-RHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       141 ~~~~--~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      ....  ...++.|.|.++. ..|.|.|.|.|.|..|...+..+.+.|.+
T Consensus       569 ~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~  617 (816)
T 3dmk_A          569 INRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV  617 (816)
T ss_dssp             CSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEEC
T ss_pred             cCCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEec
Confidence            5432  2346789999998 58999999999999987645566666643

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.70  E-value=7.9e-19  Score=139.06  Aligned_cols=121  Identities=20%  Similarity=0.349  Sum_probs=0.0

Q ss_pred             eeEEEEEecccceeEEeeccc----eeeEEEEEEE--EcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCC
Q psy15738         63 SYILAMEKEEEERKKKKKRKK----RKKKKKKKEK--RIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKN  136 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~----~~~~~~~l~v--~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~  136 (187)
                      ..|..+..+|.|.|+|.+...    ..+....|.|  ..+|.+..  .+....+.+|+.+.|.|.+.|.|.|.+.|++++
T Consensus       627 L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~--~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g  704 (772)
T 3v2a_R          627 MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITG--NLENQTTSIGESIEVSCTASGNPPPQIMWFKDN  704 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeec--CCCceEEeCCCCEEEEEEeCccCCCeEEEEECC
Confidence            337889999999999955432    1123344554  56777642  233466888999999999999999999999999


Q ss_pred             eeCCCCcE-E--EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        137 NNLPGGEY-S--YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       137 ~~~~~~~~-~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      ..+..... .  ...+.|.|.++..+|+|.|.|.|.|..|.. +..+.|.|..
T Consensus       705 ~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~  756 (772)
T 3v2a_R          705 ETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCA-KVEAFFIIEG  756 (772)
T ss_dssp             -----------------------------------------------------
T ss_pred             eECcCCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcce-eEEEEEEEEC
Confidence            87755422 1  125789999999999999999999999998 5788888754

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.70  E-value=1.3e-16  Score=113.63  Aligned_cols=124  Identities=14%  Similarity=0.135  Sum_probs=90.3

Q ss_pred             cceeEEEEEecccceeEEeec---cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEe-ccCCCCcEEEEeCC
Q psy15738         61 YLSYILAMEKEEEERKKKKKR---KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKA-DGNPVPNITWTRKN  136 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~  136 (187)
                      ..+.|..++.+|.|.|+|.+.   .+..+....+.+..+|.......+.......|+.+.|.|.+ .|.|.|.+.|++++
T Consensus        74 ~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~  153 (308)
T 4fom_A           74 ATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDL  153 (308)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCS
T ss_pred             eEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECC
Confidence            445588999999999999442   45566777888888887665554444455568899999975 68899999999999


Q ss_pred             eeCCCCcEE------EeCcEEEEecCCCCCCeEEEEEEecCCCCcc-eeeEEEEE
Q psy15738        137 NNLPGGEYS------YSGNSLTVRHTNRHSAGIYLCVANNMVGSSA-AASIALHV  184 (187)
Q Consensus       137 ~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-s~~~~l~v  184 (187)
                      ..+......      ...+.|.|..+...|.|.|.|.|.|..+... +..+.|.|
T Consensus       154 ~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V  208 (308)
T 4fom_A          154 GEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDI  208 (308)
T ss_dssp             SBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCC
T ss_pred             cccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEE
Confidence            876433221      1235689999999999999999999877653 23344433

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.70  E-value=2.5e-16  Score=113.65  Aligned_cols=121  Identities=17%  Similarity=0.119  Sum_probs=89.5

Q ss_pred             EEEEEecccceeEEeec--cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeE-----eccCCCCcEEEEeCCe
Q psy15738         65 ILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECK-----ADGNPVPNITWTRKNN  137 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~-----~~g~p~p~~~W~~~~~  137 (187)
                      |..++.+|.|.|+|.+.  .......+.|.|..++............+..|+.+.|.|.     +.|.|.+.+.|++++.
T Consensus        85 i~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~  164 (339)
T 3o4o_C           85 LLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSL  164 (339)
T ss_dssp             ESSBCTTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSC
T ss_pred             ECCCCcccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCe
Confidence            77788888999999443  3445677788888766532111222346789999999999     7888999999999998


Q ss_pred             eCCCC--cEEEe--CcEEEEecCCCCCCeEEEEEEecCCCCc---ceeeEEEEEE
Q psy15738        138 NLPGG--EYSYS--GNSLTVRHTNRHSAGIYLCVANNMVGSS---AAASIALHVL  185 (187)
Q Consensus       138 ~~~~~--~~~~~--~~~l~i~~~~~~d~g~y~C~~~n~~g~~---~s~~~~l~v~  185 (187)
                      .+...  ++...  .+.|.|.++...|.|.|.|.+.|..|..   .+..+.|.|.
T Consensus       165 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~  219 (339)
T 3o4o_C          165 LLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIK  219 (339)
T ss_dssp             BCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEE
T ss_pred             eCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEE
Confidence            87544  23322  2579999999999999999999988752   2456677664

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.70  E-value=4e-16  Score=110.16  Aligned_cols=155  Identities=15%  Similarity=0.245  Sum_probs=103.2

Q ss_pred             ceEEccCCCCeeEEEe--CeEee-eccEEEeeccccccceeEEEEEecccceeEEeecc---ceeeEEEEEEEEcCCeeE
Q psy15738         27 AIMFADSRPESTFWIF--GKLIT-SCSYIILATSLLHYLSYILAMEKEEEERKKKKKRK---KRKKKKKKKEKRIPPRII  100 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~--~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~---~~~~~~~~l~v~~~p~~~  100 (187)
                      .|.+.+... ...|++  +..+. ..++.+...+ ......|..+..+|.|.|+|.+..   ...+..+.|.|..+|.+.
T Consensus        25 ~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~  102 (291)
T 2wim_A           25 TCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEG-VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFR  102 (291)
T ss_dssp             EEEEESCCS-EEECBCTTCCBCCCBTTEEEEEET-TEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCC
T ss_pred             EEEEeCCCC-ceEEECCCCcCccCCCcEEEecCC-CEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceE
Confidence            455554443 677774  34333 3444443322 223444778899999999995542   333567788888887763


Q ss_pred             EecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCC---CcEE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcc
Q psy15738        101 YVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG---GEYS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSA  176 (187)
Q Consensus       101 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~---~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  176 (187)
                        ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..   .+.. ...+.|.|.++...|.|.|.|.+.|..+...
T Consensus       103 --~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~  180 (291)
T 2wim_A          103 --EVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEI  180 (291)
T ss_dssp             --SCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEE
T ss_pred             --eCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEECCCCee
Confidence              334456788999999999999999999999999876642   2222 2456899999999999999999999875532


Q ss_pred             -eeeEEEEEE
Q psy15738        177 -AASIALHVL  185 (187)
Q Consensus       177 -s~~~~l~v~  185 (187)
                       +..+.+.|.
T Consensus       181 ~~~~~~~~v~  190 (291)
T 2wim_A          181 DFRDIIVIVN  190 (291)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEeeEEEEec
Confidence             345555554

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.69  E-value=1.7e-16  Score=113.05  Aligned_cols=111  Identities=9%  Similarity=0.042  Sum_probs=78.5

Q ss_pred             eeEEEEEecccceeEEeeccce-eeEEEEEEEEc------------CCeeEEecCCceEEEecCCcEEEEeEec-cCCCC
Q psy15738         63 SYILAMEKEEEERKKKKKRKKR-KKKKKKKEKRI------------PPRIIYVSGAGKVEVKKGYSVTLECKAD-GNPVP  128 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~-~~~~~~l~v~~------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~-g~p~p  128 (187)
                      ..|..+..+|.|.|+|.+.... ......|.|..            +|.+.... .....+.+|+.+.|.|.+. +.|.+
T Consensus        60 L~I~~~~~~D~G~Y~C~~~n~~g~~~s~~l~v~~~~~~~~~~~~~~~p~~~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~  138 (312)
T 2y23_A           60 MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKS-ELAVEILEKGQVRFWMQAEKLSGNA  138 (312)
T ss_dssp             EEESSCCGGGCEEEEEEESSSCCCCEEEEECHHHHHHHHHHHHHHHSCBCCEEE-EEEEEECSSSCEEEEEEESCCCSSC
T ss_pred             EEECcCCccCCEEEEEEEEeCCCcEEEEEEEEeeeeeeecccccCCCCcccccc-CCceEEeeCCCEEEEEEEEeCCCCC
Confidence            3367888899999999554321 22245555542            55543221 1256788899999999998 88999


Q ss_pred             cEEEEeCCeeCCCCc-EEEe----C--cEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        129 NITWTRKNNNLPGGE-YSYS----G--NSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       129 ~~~W~~~~~~~~~~~-~~~~----~--~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      .+.|++++..+.... +...    .  ..|.|.++...|+|.|.|.+.|..+.
T Consensus       139 ~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  191 (312)
T 2y23_A          139 KVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT  191 (312)
T ss_dssp             EEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCE
T ss_pred             EEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCce
Confidence            999999998876542 2211    1  23999999999999999999875443

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.69  E-value=6.2e-16  Score=103.68  Aligned_cols=114  Identities=13%  Similarity=0.143  Sum_probs=77.0

Q ss_pred             ceeEEEEEecccceeEEeecc---cee----eEEEEEEEEcCC---eeEEecCCceEEEecCCcEEEEeEe-ccCCCCcE
Q psy15738         62 LSYILAMEKEEEERKKKKKRK---KRK----KKKKKKEKRIPP---RIIYVSGAGKVEVKKGYSVTLECKA-DGNPVPNI  130 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~---~~~----~~~~~l~v~~~p---~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~  130 (187)
                      .+.|..++.+|.|.|+|.+..   ...    ...+.|.|..++   .+..      .....|+.+.|.|.+ .|.|.|.+
T Consensus        66 ~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~------~~~~~g~~~~l~C~~~~g~P~p~i  139 (201)
T 1dr9_A           66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISD------FEIPTSNIRRIICSTSGGFPEPHL  139 (201)
T ss_dssp             EEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEE------EECSSTTEEEEEEEEEEESSCEEE
T ss_pred             EEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEe------ccCCCCCeEEEEEecCCccCCCEE
Confidence            344889999999999994442   211    356777777652   2221      112458889999999 49999999


Q ss_pred             EEEeCCeeCCCCcEE--Ee-C-cEE---EEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        131 TWTRKNNNLPGGEYS--YS-G-NSL---TVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       131 ~W~~~~~~~~~~~~~--~~-~-~~l---~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      .|+++|..+......  .. . +.+   .+..+...|.|.|.|.|.|..|.. +..+.+
T Consensus       140 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~-s~~~~~  197 (201)
T 1dr9_A          140 SWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRV-NQTFNW  197 (201)
T ss_dssp             EEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCE-EEEEEE
T ss_pred             EEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCccee-eeEEec
Confidence            999999877644221  11 1 211   234455689999999999999977 555543

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.69  E-value=8.1e-16  Score=110.55  Aligned_cols=112  Identities=15%  Similarity=0.189  Sum_probs=79.4

Q ss_pred             ceeEEEEEecccceeEEeeccc-------eeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCC--cEEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK-------RKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP--NITW  132 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~-------~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~~~W  132 (187)
                      .+.|..++.+|.|.|+|.+...       ..+..+.|.|..+|.......+ ...+.+|+.+.|.|.+.|.|+|  .+.|
T Consensus        75 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~-~~~~~~g~~~~l~C~~~g~p~~~~~v~W  153 (327)
T 2wng_A           75 SISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGP-AARATPQHTVSFTCESHGFSPRDITLKW  153 (327)
T ss_dssp             CEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECC-SSCBCTTCEEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeecc-ccccCCCCEEEEEEEEeCccCCCcEEEE
Confidence            3448889999999999954322       1224568888876654322222 2456789999999999998776  8999


Q ss_pred             EeCCeeCCCCcEE----------EeCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        133 TRKNNNLPGGEYS----------YSGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       133 ~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      ++++..+......          ...+.|.+......|.|.|.|.|.|..+.
T Consensus       154 ~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~  205 (327)
T 2wng_A          154 FKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQ  205 (327)
T ss_dssp             EETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSC
T ss_pred             EECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccC
Confidence            9999887644321          11235667666666689999999998775

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.69  E-value=9.1e-17  Score=114.79  Aligned_cols=113  Identities=18%  Similarity=0.235  Sum_probs=80.9

Q ss_pred             eeEEEEEecccceeEEeeccceeeE--EEEEEEE-cCCeeEEecC-CceEEEecCCcEEEEeEe------ccCCCCcEEE
Q psy15738         63 SYILAMEKEEEERKKKKKRKKRKKK--KKKKEKR-IPPRIIYVSG-AGKVEVKKGYSVTLECKA------DGNPVPNITW  132 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~~~~--~~~l~v~-~~p~~~~~~~-~~~~~~~~g~~~~l~C~~------~g~p~p~~~W  132 (187)
                      ..|..+..+|.|.|+|.+.......  .+.+.+. .+|.+..... .....+..|+.+.|.|.+      .|.|.|.+.|
T Consensus        64 L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W  143 (315)
T 1itb_B           64 LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQW  143 (315)
T ss_dssp             EECTTCCGGGCSCCEECCCSSSCCCCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEE
T ss_pred             EEECCCChhhCEEEEEEEeCCceEEEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEE
Confidence            3367788899999999555443333  3333332 3443321111 113467889999999998      8899999999


Q ss_pred             EeCCeeCCCC--cEEEeCcEEEEecCCCCCCeEEEEEEe-cCCCCc
Q psy15738        133 TRKNNNLPGG--EYSYSGNSLTVRHTNRHSAGIYLCVAN-NMVGSS  175 (187)
Q Consensus       133 ~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~-n~~g~~  175 (187)
                      ++++..+...  ......+.|.|.++...|.|.|.|.|. |..|..
T Consensus       144 ~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~  189 (315)
T 1itb_B          144 YKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQ  189 (315)
T ss_dssp             EETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             EECCEECCCccceEeecCceEEEEeceehhCcEEEEEEEcCCCCcE
Confidence            9999987533  334456899999999999999999999 777765

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.68  E-value=7.8e-16  Score=100.93  Aligned_cols=105  Identities=10%  Similarity=0.023  Sum_probs=73.2

Q ss_pred             eeEEEEEecccceeEEeeccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC
Q psy15738         63 SYILAMEKEEEERKKKKKRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG  142 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~  142 (187)
                      ..|.+++.+|+|.|+|..........+.|.|..++...      ...... ....|.|.+.+.|.|.+.|++++..+...
T Consensus        62 L~I~~v~~~DsG~Y~C~~~n~~~~~~~~L~V~~~~~~p------~i~~~~-~~~~L~C~~~~~p~p~i~W~~~~~~l~~~  134 (171)
T 1ccz_A           62 LTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKP------MIYWEC-SNATLTCEVLEGTDVELKLYQGKEHLRSL  134 (171)
T ss_dssp             EEECSCCGGGCEEEEEECTTCCSCEEEEEEEECCCCCC------EEEEET-TTTEEEEECSSCSSCEEEEEETTEEEEEE
T ss_pred             EEECCCChhhCceEEEEEeCCCCcEEEEEEEECcCCCC------EEEEec-CCcEEEEEeCCCCCcEEEEEECCEECcCC
Confidence            34889999999999996654444788899998654321      011111 11379999999999999999999766421


Q ss_pred             cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738        143 EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA  181 (187)
Q Consensus       143 ~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~  181 (187)
                          ....|.+.  ...|.|.|.|.|.|..+.. +..+.
T Consensus       135 ----~~~~l~~~--~~~~~g~Y~C~a~N~~~~~-~~~~~  166 (171)
T 1ccz_A          135 ----RQKTMSYQ--WTNLRAPFKCKAVNRVSQE-SEMEV  166 (171)
T ss_dssp             ----SSSEEEEE--CSCCSSCEEEEEEETTEEE-EEEEC
T ss_pred             ----cceEEEEe--ccCCCceEEEEEEcccCcc-cceeE
Confidence                22344443  3678899999999999876 44444

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.68  E-value=2.9e-16  Score=95.12  Aligned_cols=95  Identities=24%  Similarity=0.484  Sum_probs=64.0

Q ss_pred             EEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE--eCcEEEEecCCCCCCeEEE
Q psy15738         89 KKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY--SGNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus        89 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~--~~~~l~i~~~~~~d~g~y~  165 (187)
                      +.|.+..+|.+.  ..+....+..|+.+.|.|.+.|.|.|.+.|++++..+.... ...  ....|.|.++..+|+|.|.
T Consensus         3 ~~v~~~~~P~~~--~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   80 (108)
T 3kvq_A            3 LTVLERVAPTIT--GNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYT   80 (108)
T ss_dssp             --------CCCB--SCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEE
T ss_pred             eeECccCCCcee--cCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEE
Confidence            355666778774  34456788999999999999999999999999998775432 222  3468999999999999999


Q ss_pred             EEEecCCCCcceeeEEEEEEe
Q psy15738        166 CVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       166 C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      |.|.|..|.. +..+.|.|..
T Consensus        81 C~a~n~~g~~-~~~~~l~V~~  100 (108)
T 3kvq_A           81 CQACSVLGCA-KVEAFFIIEG  100 (108)
T ss_dssp             EEEC----CE-EEEEEEEEEC
T ss_pred             EEEEeCCCce-EEEEEEEEeC
Confidence            9999999988 5788888764

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.67  E-value=2e-15  Score=99.77  Aligned_cols=99  Identities=15%  Similarity=0.145  Sum_probs=71.7

Q ss_pred             eeEEEEEecccceeEEeeccc-eeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEe-ccCCCCcEEEEeCCeeCC
Q psy15738         63 SYILAMEKEEEERKKKKKRKK-RKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKA-DGNPVPNITWTRKNNNLP  140 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~  140 (187)
                      ..|..++.+|.|.|+|..... .....+.|.|..++..     +  .....+..+.|.|.+ .| |.|.+.|++++..+.
T Consensus        71 L~I~~v~~~D~G~Y~C~v~~~~~~~~~~~L~V~~~~~~-----P--~i~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~  142 (180)
T 2dru_A           71 LRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSK-----P--MIYWECSNATLTCEVLEG-TDVELKLYQGKEHLR  142 (180)
T ss_dssp             EEECSCCGGGCEEEEEEEESSSEEEEEEEEEEECCCCC-----C--EEEEEGGGTEEEEECSSC-TTCEEEEEETTEEEE
T ss_pred             EEEcCCCHHHCeEEEEEEEcCCeEEEEEEEEEECCCCC-----C--EEEecCCCEEEEEEeCCC-CCCEEEEEECCeECc
Confidence            348899999999999953222 5567788888765321     1  112245679999999 56 899999999998764


Q ss_pred             CCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        141 GGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       141 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                          .....+|.+..  ..|.|.|.|.|.|..+..
T Consensus       143 ----~~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~  171 (180)
T 2dru_A          143 ----SLRQKTMSYQW--TNLRAPFKCKAVNRVSQE  171 (180)
T ss_dssp             ----EESSSEEEEEC--SCCSSCEEEEEEETTEEE
T ss_pred             ----CCCCCEEEEEE--hhcCccEEEEEecCcCcc
Confidence                12345566533  678999999999998876

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.67  E-value=1.2e-15  Score=103.10  Aligned_cols=112  Identities=17%  Similarity=0.210  Sum_probs=78.6

Q ss_pred             ceeEEEEEecccceeEEeeccce---eeEEEEEEEEc---CCeeEEecCCceEEEecCCcEEEEeEecc-CCCC-cEEEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKKR---KKKKKKKEKRI---PPRIIYVSGAGKVEVKKGYSVTLECKADG-NPVP-NITWT  133 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~~---~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p-~~~W~  133 (187)
                      ...|..++.+|.|.|+|.+....   ......|.|..   +|.+......  .....|+.+.|.|.+.| .|++ .+.|+
T Consensus        72 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~--~~~~~g~~~~l~C~~~g~~p~~~~v~W~  149 (213)
T 3d9a_L           72 TLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPS--SEQLTSGGASVVCFLNNFYPKDINVKWK  149 (213)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCC--HHHHHTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCC--hhhcCCCcEEEEEEEeeecCCceEEEEE
Confidence            34477889999999999554332   23345677764   5655432222  12336889999999987 5555 79999


Q ss_pred             eCCeeCCCC-cEEE-----------eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        134 RKNNNLPGG-EYSY-----------SGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       134 ~~~~~~~~~-~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ++|..+... ....           ..+.|.|.++..+|.|.|.|.|.|.....
T Consensus       150 k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          150 IDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             ETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             cCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            999887655 1111           12489999999999999999999986654

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.67  E-value=1.1e-15  Score=105.67  Aligned_cols=119  Identities=15%  Similarity=0.229  Sum_probs=78.5

Q ss_pred             eeEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEecc-CCCC-cEEEEeCCee
Q psy15738         63 SYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADG-NPVP-NITWTRKNNN  138 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p-~~~W~~~~~~  138 (187)
                      ..|..++.+|.|.|+|..  ........+.|.|..+|.+.....   .....|..+.|.|.+.| .|.| .+.|++++..
T Consensus        84 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~---~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~  160 (248)
T 3pv7_A           84 LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLD---QVGMKENEDKYMCESSGFYPEAINITWEKQTQK  160 (248)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC-----------CEEEEEEEEEBSSCCEEEEEEECSS
T ss_pred             EEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecC---CccccCCCcEEEEEEccEECCCeEEEEEECCcc
Confidence            557889999999999943  344556778899999888764433   23456777889999998 7888 9999999864


Q ss_pred             CCCCc-----------------EEEeCcEEEEecCCCCCCeEEEEEEecCCCCcc-eeeEEEEE
Q psy15738        139 LPGGE-----------------YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSA-AASIALHV  184 (187)
Q Consensus       139 ~~~~~-----------------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-s~~~~l~v  184 (187)
                      +....                 .......|.+......|.|.|+|.|.|..+... +..+.|.|
T Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          161 FPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             SCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             CCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            43210                 011224677778888899999999999887642 34555554

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.67  E-value=2.1e-16  Score=94.99  Aligned_cols=89  Identities=19%  Similarity=0.313  Sum_probs=71.3

Q ss_pred             cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEEe----CcEEEEecCCCCCCeEEEEEEe
Q psy15738         95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSYS----GNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus        95 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~~----~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      .+|.+.  ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ....    ...|.|.++..+|+|.|.|.|.
T Consensus         7 ~~P~~~--~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   84 (103)
T 3qp3_A            7 HAPRIT--LRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCT   84 (103)
T ss_dssp             EEEEEE--ECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCEEE--eCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEE
Confidence            455553  23445678899999999999999999999999998876543 2221    2469999999999999999999


Q ss_pred             cCCCCcceeeEEEEEEe
Q psy15738        170 NMVGSSAAASIALHVLC  186 (187)
Q Consensus       170 n~~g~~~s~~~~l~v~~  186 (187)
                      |..|.. +..+.|.|..
T Consensus        85 N~~G~~-~~~~~l~V~~  100 (103)
T 3qp3_A           85 NYKGEA-SDYATLDVTG  100 (103)
T ss_dssp             ETTEEE-EEEEEEEEEC
T ss_pred             eCCCcE-EEEEEEEEEC
Confidence            999988 6888888864

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=6.3e-16  Score=95.22  Aligned_cols=91  Identities=23%  Similarity=0.301  Sum_probs=72.1

Q ss_pred             cCCeeEEec-CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEE--e--CcEEEEecCCCCCCeEEEEEEe
Q psy15738         95 IPPRIIYVS-GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSY--S--GNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus        95 ~~p~~~~~~-~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~--~--~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      .+|.+.... ......+.+|+.+.|.|.+.|.|.|.+.|++++..+...+...  .  ...|.|.++...|+|.|.|.|.
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   99 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQ   99 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEEEE
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEEEE
Confidence            455553221 2345778899999999999999999999999999886443322  2  2459999999999999999999


Q ss_pred             cCCCCcceeeEEEEEEe
Q psy15738        170 NMVGSSAAASIALHVLC  186 (187)
Q Consensus       170 n~~g~~~s~~~~l~v~~  186 (187)
                      |..|.. +..+.|.|..
T Consensus       100 N~~G~~-~~~~~l~V~~  115 (118)
T 2e7c_A          100 IENMKD-TATIRIRVVE  115 (118)
T ss_dssp             CSSCEE-CCEEEEEEEC
T ss_pred             eCCCeE-EEEEEEEEEc
Confidence            999977 5888888864

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.66  E-value=5.3e-16  Score=91.49  Aligned_cols=86  Identities=27%  Similarity=0.427  Sum_probs=69.0

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeCCCCcEEE---eCcEEEEecCCCCCCeEEEEEEec
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNLPGGEYSY---SGNSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      +|.+.  ..+....+..|+.+.|.|.+.|.|.|.+.|++++  ..+.......   ....|.|.++..+|+|.|.|.|.|
T Consensus         2 ~P~i~--~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   79 (93)
T 1wit_A            2 KPKIL--TASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CCEEC--CCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             CCeEE--cCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEc
Confidence            45553  3345677899999999999999999999999999  7775543221   235799999999999999999999


Q ss_pred             CCCCcceeeEEEEE
Q psy15738        171 MVGSSAAASIALHV  184 (187)
Q Consensus       171 ~~g~~~s~~~~l~v  184 (187)
                      ..|.. +..+.|.|
T Consensus        80 ~~G~~-~~~~~l~V   92 (93)
T 1wit_A           80 ELGED-EAIFEVIV   92 (93)
T ss_dssp             TTEEE-EEEEEEEE
T ss_pred             CCCeE-EEEEEEEE
Confidence            99977 57777766

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.66  E-value=1.6e-15  Score=102.76  Aligned_cols=123  Identities=11%  Similarity=0.069  Sum_probs=82.0

Q ss_pred             ceeEEEEEecccceeEEeec---cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEe-ccCCCCcEEEEeCCe
Q psy15738         62 LSYILAMEKEEEERKKKKKR---KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKA-DGNPVPNITWTRKNN  137 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~~  137 (187)
                      .+.|..++.+|.|.|+|...   +........+.+..+|........  .....++...+.|.+ .+.|++.+.|++++.
T Consensus        84 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~  161 (225)
T 4fmk_A           84 TLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQE--VTIGPQSVAVARCVSTGGRPPARITWISSLG  161 (225)
T ss_dssp             CEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECC--BCCSSSCEEEEEEEEEEEBSCCEEEEECSSC
T ss_pred             EEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccc--eeecceeeeeeeeeecCCCCCCEEEEEECCc
Confidence            34488899999999999432   344445556667777765433322  234456666666665 566788899998875


Q ss_pred             eCCCCcE--------EEeCcEEEEecCCCCCCeEEEEEEecCCCCcc-eeeEEEEEEe
Q psy15738        138 NLPGGEY--------SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSA-AASIALHVLC  186 (187)
Q Consensus       138 ~~~~~~~--------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-s~~~~l~v~~  186 (187)
                      .......        ....+.|.|.++..+|.|.|+|.|.|..+... +.+++|.|+|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y  219 (225)
T 4fmk_A          162 GEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRY  219 (225)
T ss_dssp             CEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred             cccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence            4322111        11234699999999999999999999987753 4456666654

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.66  E-value=2.1e-15  Score=92.25  Aligned_cols=89  Identities=26%  Similarity=0.376  Sum_probs=72.3

Q ss_pred             cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEEe----CcEEEEecCCCCCCeEEEEEEe
Q psy15738         95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSYS----GNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus        95 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~~----~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      .+|.+.  ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... +....    ...|.|.++..+|+|.|.|.|.
T Consensus         6 ~pp~i~--~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   83 (114)
T 2cqv_A            6 SGPQII--QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVE   83 (114)
T ss_dssp             CCCEES--CCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEE
T ss_pred             CCCEEE--eCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEE
Confidence            355553  3455678899999999999999999999999999887544 33322    4679999999999999999999


Q ss_pred             cCCCCcceeeEEEEEEe
Q psy15738        170 NMVGSSAAASIALHVLC  186 (187)
Q Consensus       170 n~~g~~~s~~~~l~v~~  186 (187)
                      |..|.. +..+.|.|..
T Consensus        84 N~~g~~-~~~~~l~V~~   99 (114)
T 2cqv_A           84 NKLGSR-QAQVNLTVVD   99 (114)
T ss_dssp             CSSCEE-ECCEEEEEEC
T ss_pred             ECCCcE-EEEEEEEEEC
Confidence            999987 5788888864

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.66  E-value=1.2e-15  Score=90.85  Aligned_cols=83  Identities=17%  Similarity=0.315  Sum_probs=68.5

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-EE---eC--cEEEEecCCCCCCeEEEEEEecCCCCcce
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-SY---SG--NSLTVRHTNRHSAGIYLCVANNMVGSSAA  177 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~---~~--~~l~i~~~~~~d~g~y~C~~~n~~g~~~s  177 (187)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ..   ..  ..|.|.++..+|+|.|.|.|.|..|.. +
T Consensus        11 ~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~-~   89 (99)
T 1g1c_A           11 RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGET-S   89 (99)
T ss_dssp             CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             cCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcE-E
Confidence            34456789999999999999999999999999998765432 21   22  379999999999999999999999988 5


Q ss_pred             eeEEEEEEeC
Q psy15738        178 ASIALHVLCK  187 (187)
Q Consensus       178 ~~~~l~v~~~  187 (187)
                      ..+.|.|..|
T Consensus        90 ~~~~l~V~~~   99 (99)
T 1g1c_A           90 SHAFLLVQAK   99 (99)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEecC
Confidence            7888888754

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.66  E-value=1.3e-15  Score=116.06  Aligned_cols=109  Identities=13%  Similarity=0.128  Sum_probs=76.0

Q ss_pred             EEEEEecccceeEEeecc--ceeeEEEEEEEEcCCeeEEecCCceEE-EecCCcEEEEeEeccCCC----CcEEEEeCCe
Q psy15738         65 ILAMEKEEEERKKKKKRK--KRKKKKKKKEKRIPPRIIYVSGAGKVE-VKKGYSVTLECKADGNPV----PNITWTRKNN  137 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~-~~~g~~~~l~C~~~g~p~----p~~~W~~~~~  137 (187)
                      |..+...| |.|+|.+..  +.....+.|.|...|.+.... +.... +.+|+.+.|.|.+.|.|+    +.+.|++++.
T Consensus       285 i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~-p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~  362 (523)
T 2rcj_C          285 VPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFP-PKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGV  362 (523)
T ss_pred             echhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEEecC-CCchhhcccCCceEEEEEEecccCCCCceEEEEEECCe
Confidence            66777789 999995543  333445556555556543222 22222 678999999999998754    4899999998


Q ss_pred             eCCCCcEE----------EeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        138 NLPGGEYS----------YSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       138 ~~~~~~~~----------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      .+......          ...+.|.|.++...|.|.|.|.|.|..+..
T Consensus       363 ~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  410 (523)
T 2rcj_C          363 QVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA  410 (523)
T ss_pred             EccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCC
Confidence            77543210          112458888888999999999999987765

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.66  E-value=1.4e-15  Score=105.86  Aligned_cols=124  Identities=13%  Similarity=0.127  Sum_probs=82.9

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEEeeccce-----------eeEEEEEEEEcCC-------------eeEEec
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKKKKRKKR-----------KKKKKKKEKRIPP-------------RIIYVS  103 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~~~-----------~~~~~~l~v~~~p-------------~~~~~~  103 (187)
                      .++.+.... .....+.|..++.+|+|.|+|.+....           ......|.|..++             ......
T Consensus        65 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~  144 (257)
T 1f3r_B           65 SRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQ  144 (257)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCE
T ss_pred             CcEEEEEECCCCEEEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEc
Confidence            455544321 222345588999999999999654331           1244578887654             111122


Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEe--CCeeCC-------------CCcEEE----eCcEEEEecCCCCCCeEE
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTR--KNNNLP-------------GGEYSY----SGNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~--~~~~~~-------------~~~~~~----~~~~l~i~~~~~~d~g~y  164 (187)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++  ++..+.             ..++..    ....|.|.++..+|+|.|
T Consensus       145 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y  224 (257)
T 1f3r_B          145 SPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATY  224 (257)
T ss_dssp             ETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEE
T ss_pred             cCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEE
Confidence            2335567889999999999999888999999  554321             122221    124799999999999999


Q ss_pred             EEEEecCC
Q psy15738        165 LCVANNMV  172 (187)
Q Consensus       165 ~C~~~n~~  172 (187)
                      .|.|.|..
T Consensus       225 ~C~a~n~~  232 (257)
T 1f3r_B          225 FCYQYNNG  232 (257)
T ss_dssp             EEEEESSS
T ss_pred             EEEEeCCC
Confidence            99999964

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.66  E-value=7.2e-16  Score=108.84  Aligned_cols=115  Identities=17%  Similarity=0.201  Sum_probs=84.3

Q ss_pred             EecccceeEEeec---cceeeEEEEEEEEc--CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc
Q psy15738         69 EKEEEERKKKKKR---KKRKKKKKKKEKRI--PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE  143 (187)
Q Consensus        69 ~~~d~g~y~c~~~---~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~  143 (187)
                      ...|.|.|+|.+.   +...+....|.|..  +|.+.....  ...+.+|+.+.|.|.+.|.|.|.+.|++++.......
T Consensus       149 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~--~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~  226 (289)
T 3mjg_X          149 GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAV--QTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLV  226 (289)
T ss_dssp             ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEES--CSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCC
T ss_pred             eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCC--cceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcc
Confidence            3568899999554   23334445677665  555543322  2467899999999999999999999998776433211


Q ss_pred             --E-EE-------eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        144 --Y-SY-------SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       144 --~-~~-------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                        . ..       ....|.|.++..+|+|.|.|.|.|..|.. +..+.|.|..
T Consensus       227 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~v~~  278 (289)
T 3mjg_X          227 EPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDH-QDEKAINITV  278 (289)
T ss_dssp             CCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTE-EEEEEEEEEE
T ss_pred             cccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCc-eeEEEEEEEE
Confidence              1 11       23689999999999999999999999998 5888888764

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.66  E-value=9e-17  Score=115.71  Aligned_cols=122  Identities=23%  Similarity=0.332  Sum_probs=66.1

Q ss_pred             eEEEEEecccceeEEeecc-ceeeEEEEEEEEcCC----------------------eeEEec--CCceEEEecCCcEEE
Q psy15738         64 YILAMEKEEEERKKKKKRK-KRKKKKKKKEKRIPP----------------------RIIYVS--GAGKVEVKKGYSVTL  118 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~~-~~~~~~~~l~v~~~p----------------------~~~~~~--~~~~~~~~~g~~~~l  118 (187)
                      .|..++.+|.|.|+|.+.. +..+..+.|.|..++                      .+....  ......+.+|+.+.|
T Consensus        64 ~i~~v~~~D~G~Y~C~a~n~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l  143 (334)
T 1ry7_B           64 QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRF  143 (334)
T ss_dssp             -------------------------------------------------------CCCCSCCTTCCCCEEEEETTCCEEE
T ss_pred             EEeecccccCEEEEEEEEeCCeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEE
Confidence            3788899999999994433 344556667666433                      221110  112356788999999


Q ss_pred             EeEeccCCCCcEEEEeCCeeCCCCcE------EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        119 ECKADGNPVPNITWTRKNNNLPGGEY------SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       119 ~C~~~g~p~p~~~W~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .|.+.|.|.+.+.|++++..+.....      ......|.|.++...|.|.|.|.+.|..|.. +..+.|.|..
T Consensus       144 ~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~  216 (334)
T 1ry7_B          144 RCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-RQTYTLDVLE  216 (334)
T ss_dssp             ECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             EEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCE-EEEEEEEEec
Confidence            99999999999999999987654321      1124589999999999999999999999877 5777887754

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=2.4e-16  Score=94.00  Aligned_cols=88  Identities=25%  Similarity=0.462  Sum_probs=70.4

Q ss_pred             EcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEe--CcEEEEecCCCCCCeEEEEEEecC
Q psy15738         94 RIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYS--GNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus        94 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      ..+|.+.  ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+........  ...|.|.++..+|+|.|.|.|.|.
T Consensus         9 ~~~P~~~--~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   86 (99)
T 2yr3_A            9 EVAPSFS--SVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENA   86 (99)
T ss_dssp             CEEEEEE--ECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEECS
T ss_pred             ccCCcee--ecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEEC
Confidence            4556654  234456788999999999999999999999999988765443322  357999999999999999999999


Q ss_pred             CCCcceeeEEEEE
Q psy15738        172 VGSSAAASIALHV  184 (187)
Q Consensus       172 ~g~~~s~~~~l~v  184 (187)
                      .|.. +..+.|.|
T Consensus        87 ~g~~-~~~~~l~V   98 (99)
T 2yr3_A           87 LGQV-SCSAWVTV   98 (99)
T ss_dssp             SCEE-EEECCEEE
T ss_pred             CCeE-EEEEEEEE
Confidence            9987 57777766

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.66  E-value=9.4e-16  Score=109.76  Aligned_cols=120  Identities=13%  Similarity=0.091  Sum_probs=84.4

Q ss_pred             ceeEEEEEecccceeEEeec-------cceeeEEEEEEEEcC---CeeEEecCCceEEEecCCcEEEEeEeccCCCCcEE
Q psy15738         62 LSYILAMEKEEEERKKKKKR-------KKRKKKKKKKEKRIP---PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNIT  131 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~-------~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~  131 (187)
                      ...|..++.+|+|.|+|.+.       ....+..+.|.|...   |.+...  +.. .+.+|+.+.|.|.+. .+++.+.
T Consensus        75 ~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~--~~~-~v~~G~~v~L~C~~~-~~~~~~~  150 (316)
T 3vh8_G           75 SFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAH--PGP-LVKSGERVILQCWSD-IMFEHFF  150 (316)
T ss_dssp             CEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEE--SCS-EEETTCCEEEEEEES-SCCSEEE
T ss_pred             EEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEec--CCC-ccCCCCeEEEEEcCC-CCCcEEE
Confidence            34478899999999999543       233456677888643   344322  222 378999999999995 4567899


Q ss_pred             EEeCCeeCCCCcEE------EeCcEEEEecCCCCCCeEEEEEEecCCCCc----ceeeEEEEEE
Q psy15738        132 WTRKNNNLPGGEYS------YSGNSLTVRHTNRHSAGIYLCVANNMVGSS----AAASIALHVL  185 (187)
Q Consensus       132 W~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~----~s~~~~l~v~  185 (187)
                      |++++..+......      .....|.|.++..+|+|.|.|.|.|..|..    .+..+.|.|.
T Consensus       151 w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~  214 (316)
T 3vh8_G          151 LHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVT  214 (316)
T ss_dssp             EEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEE
T ss_pred             EEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEec
Confidence            99999876433211      134679999999999999999999988742    1455666654

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.65  E-value=1.4e-15  Score=105.08  Aligned_cols=120  Identities=15%  Similarity=0.092  Sum_probs=85.6

Q ss_pred             eeEEEEEecccceeEEeecc----ceeeEEEEEEEEc---CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeC
Q psy15738         63 SYILAMEKEEEERKKKKKRK----KRKKKKKKKEKRI---PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRK  135 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~  135 (187)
                      ..|..|+.+|+|.|+|....    ...+..+.|.|..   +|.+....   ...+.+|+.+.|.|.+.+. .+.+.|+++
T Consensus        62 L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p---~~~v~~G~~vtL~C~~~~~-~~~~~w~k~  137 (242)
T 1p6f_A           62 FYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP---GPEVISGEKVTFYCRLDTA-TSMFLLLKE  137 (242)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEES---CSEEETTCEEEEEEECTTS-CSEEEEEEC
T ss_pred             EEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccC---CCccCCCCcEEEEEecCCC-CCEEEEEEC
Confidence            44778999999999996532    2235667888874   45544222   2357899999999998764 468999999


Q ss_pred             CeeCCCCcEE-EeCcEEEEecCCCCCCeEEEEEEecCC--CCcceeeEEEEEEe
Q psy15738        136 NNNLPGGEYS-YSGNSLTVRHTNRHSAGIYLCVANNMV--GSSAAASIALHVLC  186 (187)
Q Consensus       136 ~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~--g~~~s~~~~l~v~~  186 (187)
                      |..+...... .....|.|.+++..|+|.|.|.+.|..  ....|..+.|.|..
T Consensus       138 g~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~  191 (242)
T 1p6f_A          138 GRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG  191 (242)
T ss_dssp             SSSCEEEEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             CCccCccccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence            9765431111 124679999999999999999999864  23336788887753

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.65  E-value=3.7e-15  Score=88.68  Aligned_cols=83  Identities=29%  Similarity=0.464  Sum_probs=67.9

Q ss_pred             ecCCceEEEecCCcEEEEeEec-cCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeE
Q psy15738        102 VSGAGKVEVKKGYSVTLECKAD-GNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASI  180 (187)
Q Consensus       102 ~~~~~~~~~~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~  180 (187)
                      ...+....+.+|+.+.|.|.+. +.|.+.+.|++++............+.|.|.++..+|+|.|.|.+.|..|.. +..+
T Consensus        14 ~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~   92 (98)
T 1gl4_B           14 VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMD-QGTA   92 (98)
T ss_dssp             ECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCEE-EEEE
T ss_pred             EeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCceeecCCCEEEEeCCChhhCEEEEEEecCCCCcc-ccEE
Confidence            3344566788999999999998 6889999999986554444444567899999999999999999999999987 5788


Q ss_pred             EEEEE
Q psy15738        181 ALHVL  185 (187)
Q Consensus       181 ~l~v~  185 (187)
                      .|.|.
T Consensus        93 ~l~V~   97 (98)
T 1gl4_B           93 TLHVQ   97 (98)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            88774

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.65  E-value=9e-16  Score=103.66  Aligned_cols=112  Identities=12%  Similarity=0.112  Sum_probs=79.8

Q ss_pred             ceeEEEEEecccceeEEeeccc----eeeEEEEEEEE----cCCeeEEecCCceEEEecCCcEEEEeEeccCC--CCcEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK----RKKKKKKKEKR----IPPRIIYVSGAGKVEVKKGYSVTLECKADGNP--VPNIT  131 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~----~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p--~p~~~  131 (187)
                      ...|.+++.+|.|.|+|.+...    .......|.|.    .+|.+......  .....|+.+.|.|.+.|.+  .+.+.
T Consensus        69 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~--~~~~~g~~v~l~C~~~g~~p~~~~v~  146 (211)
T 3tv3_L           69 SLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPS--SEELQANKATLVCLISDFYPGAVTVA  146 (211)
T ss_dssp             EEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCC--HHHHHTTCEEEEEEEEEEBSSCCEEE
T ss_pred             EEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCc--hhhhcCCCeEEEEEeeeecCCCeEEE
Confidence            4458899999999999954432    34566788887    56665433221  2233699999999999863  47899


Q ss_pred             EEeCCeeCCCCcEE-----------EeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        132 WTRKNNNLPGGEYS-----------YSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       132 W~~~~~~~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      |+++|..+......           .....|.|.++...|.|.|.|.|.|..+..
T Consensus       147 W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~  201 (211)
T 3tv3_L          147 WKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV  201 (211)
T ss_dssp             EEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEE
T ss_pred             EEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCE
Confidence            99999877542111           112468888888888999999999987655

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.64  E-value=1.3e-14  Score=100.22  Aligned_cols=123  Identities=11%  Similarity=0.165  Sum_probs=82.6

Q ss_pred             ceeEEEEEecccceeEEeeccc----eeeEEEEEEEEcCCe-------------eEEecCCceEEEecCCcEEEEeEecc
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK----RKKKKKKKEKRIPPR-------------IIYVSGAGKVEVKKGYSVTLECKADG  124 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~----~~~~~~~l~v~~~p~-------------~~~~~~~~~~~~~~g~~~~l~C~~~g  124 (187)
                      .+.|.+++.+|+|.|+|.+...    .......|.|..++.             ......+....+.+|+.+.|.|.+.+
T Consensus        82 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~  161 (247)
T 2ghw_B           82 YLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQ  161 (247)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESS
T ss_pred             EEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCC
Confidence            3558889999999999955433    122345777775421             11122344566889999999999999


Q ss_pred             CCCCcEEEEe--CCeeCC-------------CCcEEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        125 NPVPNITWTR--KNNNLP-------------GGEYSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       125 ~p~p~~~W~~--~~~~~~-------------~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      .|++.+.|++  ++..+.             ..+...    ....|.|.++..+|+|.|.|.|.|..+........|.|
T Consensus       162 ~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V  240 (247)
T 2ghw_B          162 SVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEV  240 (247)
T ss_dssp             CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             CccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEE
Confidence            9989999999  444320             122221    12469999999999999999999864333233445555

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.64  E-value=8.9e-16  Score=110.34  Aligned_cols=109  Identities=13%  Similarity=0.127  Sum_probs=67.6

Q ss_pred             ecccceeEEeeccce-----eeEEEEE--EEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCC-C-cEEEEeCCeeCC
Q psy15738         70 KEEEERKKKKKRKKR-----KKKKKKK--EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPV-P-NITWTRKNNNLP  140 (187)
Q Consensus        70 ~~d~g~y~c~~~~~~-----~~~~~~l--~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p-~~~W~~~~~~~~  140 (187)
                      ..|.|.|+|.+....     ....+.+  .+..+|.+......    +.+|+.+.|.|.+.|.|+ + .+.|+++|..+.
T Consensus       189 ~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~----~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  264 (327)
T 2wng_A          189 EDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP----VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSR  264 (327)
T ss_dssp             TGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC----CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEE
T ss_pred             cCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC----cCCCCcEEEEEEEccccCCCcEEEEEECCeEcc
Confidence            345699999554321     2233333  45677776533221    678999999999999644 4 799999998763


Q ss_pred             CC---cEEE-------eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        141 GG---EYSY-------SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       141 ~~---~~~~-------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      ..   ....       ....|.|.++..+|.|.|.|.|.|..+...++++.+
T Consensus       265 ~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~  316 (327)
T 2wng_A          265 TETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDL  316 (327)
T ss_dssp             EEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEEC
T ss_pred             CcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheEE
Confidence            21   1111       114578888889999999999999998876666544

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.64  E-value=5.6e-15  Score=112.54  Aligned_cols=117  Identities=15%  Similarity=0.153  Sum_probs=83.6

Q ss_pred             ceeEEEEEecccceeEEeeccce-----eeEEEEEEEE----cCCeeEEecCCceEEEecCCcEEEEeEeccCCCC--cE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKKR-----KKKKKKKEKR----IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP--NI  130 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~~-----~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~~  130 (187)
                      ...|.+++.+|.|.|+|.+....     ....+.|.|.    .+|.+...  +......+|+.+.|.|.+.|.|++  .+
T Consensus        71 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~--~~~~~~~~g~~v~l~C~~~g~~p~~~~v  148 (523)
T 2rcj_C           71 SLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLF--PPSSEELQANKATLVCLISDFYPGAVTV  148 (523)
T ss_pred             EEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEec--CCcccccCCCceEEEEEeccccCCceEE
Confidence            45588999999999999655422     2345678883    45555422  223345678999999999998765  89


Q ss_pred             EEEeCCeeCCCCcEEE-----------eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738        131 TWTRKNNNLPGGEYSY-----------SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA  181 (187)
Q Consensus       131 ~W~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~  181 (187)
                      .|+++|..+.......           ..+.|.|.++..+|.|.|.|.|.|..+... ..+.
T Consensus       149 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~-~~~~  209 (523)
T 2rcj_C          149 AWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE-KTVA  209 (523)
T ss_pred             EEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccc-ccee
Confidence            9999998775432211           123699999999999999999999987653 4443

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=4.4e-15  Score=88.64  Aligned_cols=89  Identities=28%  Similarity=0.537  Sum_probs=71.6

Q ss_pred             cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC--cE-EEeCcEEEEecCCCCCCeEEEEEEecC
Q psy15738         95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG--EY-SYSGNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus        95 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      .+|.+.  ..+....+..|+.+.|.|.+.|.|.|.+.|++++..+...  +. ....+.|.|.++...|.|.|.|.|.|.
T Consensus         7 ~~P~i~--~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~   84 (100)
T 2edj_A            7 GPPIIL--QGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSS   84 (100)
T ss_dssp             SSCEEE--ECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECS
T ss_pred             CCCEEE--eCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcC
Confidence            355553  3345567889999999999999999999999999876522  22 224568999999999999999999999


Q ss_pred             CCCcceeeEEEEEEe
Q psy15738        172 VGSSAAASIALHVLC  186 (187)
Q Consensus       172 ~g~~~s~~~~l~v~~  186 (187)
                      .|.. +..+.|.|..
T Consensus        85 ~g~~-~~~~~l~V~~   98 (100)
T 2edj_A           85 SGET-SWSAVLDVTE   98 (100)
T ss_dssp             SCCC-BCCEEEEEES
T ss_pred             CCCE-EEEEEEEEec
Confidence            9988 6888888864

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.64  E-value=2.3e-15  Score=106.16  Aligned_cols=123  Identities=13%  Similarity=0.087  Sum_probs=89.4

Q ss_pred             cceeEEEEEecccceeEEeec--cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCc-EEEEe-CC
Q psy15738         61 YLSYILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPN-ITWTR-KN  136 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-~~W~~-~~  136 (187)
                      ....|..++.+|.|.|+|.+.  ....+..+.|.|..+|... ...+....+.+|+.+.|.|.+.+.+.+. +.|++ ++
T Consensus        51 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~-~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~  129 (289)
T 3ejj_X           51 STLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSW-NLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGG  129 (289)
T ss_dssp             CEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSCSE-EESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGG
T ss_pred             cEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCcce-ecccceEEEecCCceEeEEEccCCCcceEEEEEecCC
Confidence            344477899999999999543  3446778888888877643 3334567889999999999999877765 99986 56


Q ss_pred             eeCCCCc-EE-EeCcEEEEecCCCCCCeEEEEEEec-CCCCcceeeEEEEEE
Q psy15738        137 NNLPGGE-YS-YSGNSLTVRHTNRHSAGIYLCVANN-MVGSSAAASIALHVL  185 (187)
Q Consensus       137 ~~~~~~~-~~-~~~~~l~i~~~~~~d~g~y~C~~~n-~~g~~~s~~~~l~v~  185 (187)
                      ..+.... .. ...+.|.|.++...|.|.|.|.+.| ..+.. +..+.|.|.
T Consensus       130 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~-~~~~~l~V~  180 (289)
T 3ejj_X          130 RQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGREST-STGIWLKVN  180 (289)
T ss_dssp             EECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEE-CCCEEEEEE
T ss_pred             eecCCCccEEECCCCCEEEeecccccCEEEEEEEEeCCCccc-cccEEEEEE
Confidence            5554332 22 3457899999999999999999994 44433 567777775

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.64  E-value=2.8e-15  Score=101.22  Aligned_cols=112  Identities=15%  Similarity=0.177  Sum_probs=77.0

Q ss_pred             ceeEEEEEecccceeEEeeccce---eeEEEEEEEEc---CCeeEEecCCceEEEecCCcEEEEeEeccC-CCC-cEEEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKKR---KKKKKKKEKRI---PPRIIYVSGAGKVEVKKGYSVTLECKADGN-PVP-NITWT  133 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~~---~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~~~W~  133 (187)
                      ...|..++.+|.|.|+|.+....   ......|.|..   +|.+......  .....|+.+.|.|.+.|. |++ .+.|+
T Consensus        71 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~v~l~C~~~g~~p~~~~v~W~  148 (210)
T 1lk3_L           71 TLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPS--TEQLATGGASVVCLMNNFYPRDISVKWK  148 (210)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCC--HHHHTTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCc--hhhccCCcEEEEEEEEeEeCCceEEEEE
Confidence            34477889999999999554322   22344677764   4555432221  123368999999999874 444 79999


Q ss_pred             eCCeeCCCC-cEE-----------EeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        134 RKNNNLPGG-EYS-----------YSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       134 ~~~~~~~~~-~~~-----------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ++|..+... ...           ...+.|.|.++..+|.|.|.|.|.|.....
T Consensus       149 k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          149 IDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             ETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             eCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence            999887655 111           012368999999999999999999976543

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.64  E-value=2.1e-16  Score=114.10  Aligned_cols=116  Identities=17%  Similarity=0.290  Sum_probs=83.8

Q ss_pred             EEEEEecccceeEEeecc--c----eeeEEEEEEEEc-----CCeeEEecCCceEEEecCCcEEEEeEe---ccCC-CCc
Q psy15738         65 ILAMEKEEEERKKKKKRK--K----RKKKKKKKEKRI-----PPRIIYVSGAGKVEVKKGYSVTLECKA---DGNP-VPN  129 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~--~----~~~~~~~l~v~~-----~p~~~~~~~~~~~~~~~g~~~~l~C~~---~g~p-~p~  129 (187)
                      |..+...|.|.|+|.+..  .    ..+..+.|.|..     +|.+.  ..+....+..|+.+.|.|.+   .|.| .+.
T Consensus       184 i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~--~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~  261 (339)
T 3o4o_C          184 VHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVII--SPLKTISASLGSRLTIPCKVFLGTGTPLTTM  261 (339)
T ss_dssp             ESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEEC--CCSCCCCCCCCSCCCCCCCEEESSSCCSSCE
T ss_pred             EcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEe--cCCceeEeccCCCEEEEEEEECCCCCCCCce
Confidence            667788899999995432  1    346677888874     34443  22444567889999999999   8999 788


Q ss_pred             EEEEeCCeeCCCC----------cEEE-eCc------EEEEecCCCCCC-eEEEEEEecCCCCcceeeEEEE
Q psy15738        130 ITWTRKNNNLPGG----------EYSY-SGN------SLTVRHTNRHSA-GIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       130 ~~W~~~~~~~~~~----------~~~~-~~~------~l~i~~~~~~d~-g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      +.|++++..+...          .... ..+      .|.|.++..+|. |.|.|.|.|..|.. +..+.+.
T Consensus       262 v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~-~~~~~~~  332 (339)
T 3o4o_C          262 LWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQ-TLRTTVK  332 (339)
T ss_dssp             EEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEE-CCBCCCC
T ss_pred             EEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCce-EEEEEhh
Confidence            9999998765321          1111 122      799999999997 99999999999987 4655543

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.64  E-value=1.5e-15  Score=90.64  Aligned_cols=82  Identities=24%  Similarity=0.498  Sum_probs=67.8

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc---EEE-eC--cEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---YSY-SG--NSLTVRHTNRHSAGIYLCVANNMVGSSAAA  178 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~---~~~-~~--~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~  178 (187)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+....   ... ..  ..|.|.++...|+|.|.|.|.|..|.. +.
T Consensus        12 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~   90 (100)
T 2kdg_A           12 PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEA-TF   90 (100)
T ss_dssp             CCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEE-EE
T ss_pred             CCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeE-EE
Confidence            445678899999999999999999999999998775442   111 22  379999999999999999999999987 68


Q ss_pred             eEEEEEEeC
Q psy15738        179 SIALHVLCK  187 (187)
Q Consensus       179 ~~~l~v~~~  187 (187)
                      .+.|.|..+
T Consensus        91 ~~~l~V~~~   99 (100)
T 2kdg_A           91 TVQLDVLAK   99 (100)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEEec
Confidence            888888653

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.64  E-value=2.6e-15  Score=111.85  Aligned_cols=107  Identities=22%  Similarity=0.302  Sum_probs=72.2

Q ss_pred             EEEEEecccceeEEeeccceeeEEEEEEEEc--CCeeEEecCCceEEEecCCcEEEEeEeccCC--CCcEEEEeC--Cee
Q psy15738         65 ILAMEKEEEERKKKKKRKKRKKKKKKKEKRI--PPRIIYVSGAGKVEVKKGYSVTLECKADGNP--VPNITWTRK--NNN  138 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~--~~~  138 (187)
                      |..+..+|.|.|+|.+........+.+.+..  ++... . .+....+.+|+.+.|.|.+.|.|  .+.+.|+++  +..
T Consensus       185 i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~-~-~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~  262 (438)
T 1qgc_4          185 LTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVML-V-ESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKR  262 (438)
T ss_dssp             EEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEE-E-EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTE
T ss_pred             EeCcccCCCCeEEEEEEecccCCceecccccccceeEE-e-cCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCC
Confidence            6677778999999965544333334444442  12221 1 12345688999999999999988  678999996  432


Q ss_pred             CC------------------CCcEEEe------CcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        139 LP------------------GGEYSYS------GNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       139 ~~------------------~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      +.                  ..+....      ...|.|.++..+|+|.|.|.|.|..+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  321 (438)
T 1qgc_4          263 LEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGG  321 (438)
T ss_dssp             EEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSS
T ss_pred             cEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCC
Confidence            21                  1222211      23799999999999999999998544

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.63  E-value=9.9e-16  Score=103.86  Aligned_cols=112  Identities=14%  Similarity=0.145  Sum_probs=76.0

Q ss_pred             ceeEEEEEecccceeEEeeccc-------eeeEEEEEEEE----cCCeeEEecCCceEEEecCCcEEEEeEecc-CCCC-
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK-------RKKKKKKKEKR----IPPRIIYVSGAGKVEVKKGYSVTLECKADG-NPVP-  128 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~-------~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p-  128 (187)
                      .+.|..++.+|.|.|+|.....       .......|.|.    .+|.+.....  ......|+.+.|.|.+.| .|.| 
T Consensus        76 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~--~~~~~~~~~v~L~C~~~g~~p~~~  153 (218)
T 3s96_B           76 YLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPP--SSEELKENKATLVCLISNFSPSGV  153 (218)
T ss_dssp             EEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECC--CHHHHHTTEEEEEEEEEEEBSSCC
T ss_pred             EEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCC--CcccccCCcEEEEEEECcccCCCe
Confidence            3447889999999999954322       33446688887    4455542221  122345789999999988 4666 


Q ss_pred             cEEEEeCCeeCCCCcE----------EEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        129 NITWTRKNNNLPGGEY----------SYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       129 ~~~W~~~~~~~~~~~~----------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      .+.|+++|..+.....          ....+.|.+......|.|.|.|.|.|..+..
T Consensus       154 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~  210 (218)
T 3s96_B          154 TVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTV  210 (218)
T ss_dssp             EEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEE
T ss_pred             EEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcc
Confidence            8999999988754211          1112447788888888999999999987655

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.63  E-value=4.3e-15  Score=87.17  Aligned_cols=77  Identities=19%  Similarity=0.379  Sum_probs=65.3

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+...    ....|.|.++..+|+|.|.|.|.|..|...+..+.|.|
T Consensus        10 p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V   85 (91)
T 3bfo_A           10 PTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE----TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII   85 (91)
T ss_dssp             CCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTC----CSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEE
T ss_pred             CCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC----CCCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEEEEE
Confidence            33456889999999999999999999999999887654    24689999999999999999999999976566777776


Q ss_pred             E
Q psy15738        185 L  185 (187)
Q Consensus       185 ~  185 (187)
                      .
T Consensus        86 ~   86 (91)
T 3bfo_A           86 D   86 (91)
T ss_dssp             C
T ss_pred             e
Confidence            3

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.63  E-value=3.9e-15  Score=113.65  Aligned_cols=110  Identities=18%  Similarity=0.234  Sum_probs=82.9

Q ss_pred             EEecccceeEEeecc---ceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEec-cCCCCcEEEEeCCeeCCCCc
Q psy15738         68 MEKEEEERKKKKKRK---KRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKAD-GNPVPNITWTRKNNNLPGGE  143 (187)
Q Consensus        68 v~~~d~g~y~c~~~~---~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~  143 (187)
                      +...|.|.|+|.+..   ......+.|.|..+|.+    .+....+.+|+.+.|.|.+. |.|.|.+.|++++..+....
T Consensus       198 ~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~----~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~  273 (527)
T 3qs9_E          198 LHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT----TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGN  273 (527)
T ss_dssp             ECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCC----SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGG
T ss_pred             ccccCCEEEEEEEEeCCCcccceEEEEEEeccCcc----CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCc
Confidence            447799999996652   22233467777777765    23456788999999999996 89999999999998765442


Q ss_pred             EE-----------EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        144 YS-----------YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       144 ~~-----------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      ..           .....|.|.++..+|+|.|.|.|.|.   . +..+.|.|.
T Consensus       274 ~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~-~~~~~L~V~  322 (527)
T 3qs9_E          274 YFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---P-SQSALVTIV  322 (527)
T ss_dssp             EEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---E-EEEEEEEEC
T ss_pred             eeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---C-CceEEEEEE
Confidence            11           12346999999999999999999998   3 567777764

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.63  E-value=2.4e-15  Score=89.57  Aligned_cols=81  Identities=23%  Similarity=0.441  Sum_probs=66.6

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc--EEE-eC---cEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE--YSY-SG---NSLTVRHTNRHSAGIYLCVANNMVGSSAAA  178 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~--~~~-~~---~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~  178 (187)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+....  ... ..   ..|.|.++..+|+|.|.|.|.|..|.. +.
T Consensus        12 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~-~~   90 (99)
T 1u2h_A           12 LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGAR-QC   90 (99)
T ss_dssp             CCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEE-EE
T ss_pred             CCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCce-eE
Confidence            445678899999999999999999999999998875442  211 12   269999999999999999999999988 57


Q ss_pred             eEEEEEEe
Q psy15738        179 SIALHVLC  186 (187)
Q Consensus       179 ~~~l~v~~  186 (187)
                      .+.|.|..
T Consensus        91 ~~~l~V~~   98 (99)
T 1u2h_A           91 EARLEVRG   98 (99)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEC
Confidence            88888864

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.63  E-value=3.5e-15  Score=115.00  Aligned_cols=153  Identities=12%  Similarity=0.106  Sum_probs=94.6

Q ss_pred             CCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeecc
Q psy15738          3 ADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRK   82 (187)
Q Consensus         3 ~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~   82 (187)
                      +.|.|.++|+++|+++.....         .......      .+.++..+..++.+.    |.+++.+|.|.|+|....
T Consensus       393 ~~~~~~v~W~k~~~~~~~~~~---------~~~~~~~------~~~~r~~~~~~~~L~----i~~v~~~D~G~Y~C~~~n  453 (581)
T 3o3u_N          393 KKPPQRLEWKLNTGRTEAWKV---------LSPQGGG------PWDSVARVLPNGSLF----LPAVGIQDEGIFRCQAMN  453 (581)
T ss_dssp             SSSSCEEEEEEEETTSSSCEE---------CCSCCSS------GGGGTSEECTTSCEE----ESSCCGGGCEEEEEEEEC
T ss_pred             CCCCceEEEEEcCCeeEEEEe---------cccCCCC------CcCCcEEEcCCceEE----EeccccccCeEEEEEEEc
Confidence            567888888888764321100         0000000      123444444434344    889999999999995432


Q ss_pred             --ce-eeEEEEEEEEcCCeeEEecCCceEEEecCCc-EEEEeEecc-CCCCcEEEEeCCeeCCCC--cEEE---------
Q psy15738         83 --KR-KKKKKKKEKRIPPRIIYVSGAGKVEVKKGYS-VTLECKADG-NPVPNITWTRKNNNLPGG--EYSY---------  146 (187)
Q Consensus        83 --~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~-~~l~C~~~g-~p~p~~~W~~~~~~~~~~--~~~~---------  146 (187)
                        .. ....+.|.|..+|.......... .+..+.. +.|.|.+.+ .|.|.+.|++++..+...  ....         
T Consensus       454 ~~~~~~~~~~~l~V~~~~~~p~i~~~~~-~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~  532 (581)
T 3o3u_N          454 RNGKETKSNYRVRVYQIPGKPEIVDSAS-ELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPE  532 (581)
T ss_dssp             TTSCEEEEEEEEEEEBCCCCCEEESCCS-EECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTT
T ss_pred             CCCceeEEEEEEEEEcCCCCCEEEcCCc-ccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCC
Confidence              22 25678999987654332222222 2445544 467999988 599999999999887532  1111         


Q ss_pred             -----eCcEEEEecCCCCC-CeEEEEEEecCCCCc
Q psy15738        147 -----SGNSLTVRHTNRHS-AGIYLCVANNMVGSS  175 (187)
Q Consensus       147 -----~~~~l~i~~~~~~d-~g~y~C~~~n~~g~~  175 (187)
                           ..+.|.+..+..+| .|.|+|.+.|..+..
T Consensus       533 ~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~  567 (581)
T 3o3u_N          533 TGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH  567 (581)
T ss_dssp             TCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred             CceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence                 12468888888555 789999999987543

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.63  E-value=2.1e-16  Score=106.87  Aligned_cols=112  Identities=13%  Similarity=0.138  Sum_probs=76.9

Q ss_pred             ceeEEEEEecccceeEEeec---cc--eeeEEEEEEEE----cCCeeEEecCCceEEEecCCcEEEEeEeccC-CC-CcE
Q psy15738         62 LSYILAMEKEEEERKKKKKR---KK--RKKKKKKKEKR----IPPRIIYVSGAGKVEVKKGYSVTLECKADGN-PV-PNI  130 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~---~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-p~~  130 (187)
                      ...|..++.+|+|.|+|.+.   ..  .......|.|.    .+|.+...  +.......|+.+.|.|.+.|. |+ +.+
T Consensus        70 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~--~~~~~~~~g~~v~L~C~~~g~~p~~~~v  147 (212)
T 1nfd_E           70 TLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVF--PPSPEELRTNKATLVCLVNDFYPGSATV  147 (212)
T ss_dssp             EEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECC--CCCHHHHHTTEECCCEEEEEEBSSCCEE
T ss_pred             EEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEee--CCchHhccCCceEEEEEEEeeECCccEE
Confidence            34477889999999999555   21  11334566774    34544321  111223568999999999987 54 789


Q ss_pred             EEEeCCeeCCCCcE----------EEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        131 TWTRKNNNLPGGEY----------SYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       131 ~W~~~~~~~~~~~~----------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      .|+++|..+.....          ....+.|.|.++..+|.|.|.|.|.|..+..
T Consensus       148 ~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (212)
T 1nfd_E          148 TWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV  202 (212)
T ss_dssp             EEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             EEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceE
Confidence            99999987654321          1112458899999999999999999987764

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.62  E-value=3.7e-14  Score=100.05  Aligned_cols=123  Identities=13%  Similarity=0.169  Sum_probs=81.2

Q ss_pred             cceeEEEEEecccceeEEeeccce-------eeEEEEEEEEcCCe-------------eEEecCCceEEEecCCcEEEEe
Q psy15738         61 YLSYILAMEKEEEERKKKKKRKKR-------KKKKKKKEKRIPPR-------------IIYVSGAGKVEVKKGYSVTLEC  120 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~~~~~~-------~~~~~~l~v~~~p~-------------~~~~~~~~~~~~~~g~~~~l~C  120 (187)
                      ....|..++.+|+|.|+|......       ......|.|..+|.             ......+....+.+|+.+.|.|
T Consensus       105 ~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C  184 (282)
T 1qok_A          105 AYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITC  184 (282)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEE
T ss_pred             EEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEE
Confidence            345588999999999999554321       12345788876541             1112234456788999999999


Q ss_pred             EeccCCCCcEEEEe--CCeeCC-------------CCcEEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738        121 KADGNPVPNITWTR--KNNNLP-------------GGEYSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA  181 (187)
Q Consensus       121 ~~~g~p~p~~~W~~--~~~~~~-------------~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~  181 (187)
                      .+.+.| +.+.|++  ++..+.             ..++..    ....|.|.++..+|+|.|.|.+.|..+..-.....
T Consensus       185 ~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~  263 (282)
T 1qok_A          185 SASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTK  263 (282)
T ss_dssp             EESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEE
T ss_pred             EecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEE
Confidence            999998 8999999  554331             122221    12479999999999999999999854322223445


Q ss_pred             EEE
Q psy15738        182 LHV  184 (187)
Q Consensus       182 l~v  184 (187)
                      |.|
T Consensus       264 l~V  266 (282)
T 1qok_A          264 LEL  266 (282)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.62  E-value=2.4e-14  Score=99.67  Aligned_cols=121  Identities=11%  Similarity=0.176  Sum_probs=83.6

Q ss_pred             ceeEEEEEecccceeEEeeccc-------eeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCC-----c
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK-------RKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP-----N  129 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~-------~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-----~  129 (187)
                      .+.|..++.+|+|.|+|.+...       .....+.|.|..+|.+.  ..+....+.+|+.+.|.|.+.+.|++     .
T Consensus        80 ~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~--~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~  157 (256)
T 1nqb_A           80 YMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELT--QTPLSLPVSLGDQASISCRSSQSIVHSNGNTY  157 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEE--EECSEEEECTTCCEEEEEEESSCCBCTTSCBC
T ss_pred             EEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEE--ecCcEEEEecCCcEEEEeEecCcccccccceE
Confidence            4457889999999999955433       12345678887776653  23445678899999999999998865     8


Q ss_pred             EEEEe--CCeeCC-------------CCcEEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        130 ITWTR--KNNNLP-------------GGEYSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       130 ~~W~~--~~~~~~-------------~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      +.|++  ++..+.             ..++..    ....|.|.++..+|+|.|.|.+.|.....-.....|.|
T Consensus       158 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V  231 (256)
T 1nqb_A          158 LEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEI  231 (256)
T ss_dssp             EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             EEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEE
Confidence            99999  554321             122221    12479999999999999999999854332223444554

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.62  E-value=1e-14  Score=103.04  Aligned_cols=121  Identities=12%  Similarity=0.034  Sum_probs=92.6

Q ss_pred             cceeEEEEEecccceeEEeeccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCC-CcEEEE-eCCee
Q psy15738         61 YLSYILAMEKEEEERKKKKKRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPV-PNITWT-RKNNN  138 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~~~W~-~~~~~  138 (187)
                      ....|..+..+|.|.|+|.+..+ .+..+.|.|..+|...  ..+....+.+|+.+.|.|.+.+ |. +.+.|+ +++..
T Consensus        57 ~~L~i~~~~~~d~G~Y~C~~~ng-~~~~~~l~V~~~~~~~--~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~  132 (290)
T 2o26_X           57 NEWIQEKAEATRTGTYTCSNSNG-LTSSIYVFVRDPAKLF--LVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKS  132 (290)
T ss_dssp             SEEEETTCCGGGCEEEEEEESSS-CEEEEEEEEECSSCCB--CCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCC
T ss_pred             ceEEEeccCHHhCeEEEEEeeCC-ccEEEEEEEeCCCccc--ccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcC
Confidence            33447788999999999966653 3788899999887764  3344567889999999999986 77 899995 67777


Q ss_pred             CCCCcEE--EeCcEEEEecCCCCCCe-EEEEEEecCCCCcceeeEEEEEE
Q psy15738        139 LPGGEYS--YSGNSLTVRHTNRHSAG-IYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       139 ~~~~~~~--~~~~~l~i~~~~~~d~g-~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      +......  .....|.|.++..+|.| .|.|.|.|..+...+..+.|.|.
T Consensus       133 l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~  182 (290)
T 2o26_X          133 LPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVR  182 (290)
T ss_dssp             CCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEE
Confidence            6554332  23478999999999999 99999999866544456777764

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.62  E-value=1.1e-15  Score=91.91  Aligned_cols=74  Identities=20%  Similarity=0.361  Sum_probs=61.3

Q ss_pred             ecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE---E-------eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeE
Q psy15738        111 KKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS---Y-------SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASI  180 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~---~-------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~  180 (187)
                      ..+..+.+.|.+.|.|.|.+.|+++|..+......   .       ..+.|.|.++..+|+|.|.|.|.|..|.. +.++
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~   92 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD-EKQI   92 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcE-eEEE
Confidence            35778899999999999999999999987655321   1       12349999999999999999999999988 5888


Q ss_pred             EEEEE
Q psy15738        181 ALHVL  185 (187)
Q Consensus       181 ~l~v~  185 (187)
                      .|.|.
T Consensus        93 ~l~V~   97 (103)
T 1wwb_X           93 SAHFM   97 (103)
T ss_dssp             EECCS
T ss_pred             EEEEC
Confidence            88764

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.61  E-value=1.1e-16  Score=114.33  Aligned_cols=150  Identities=11%  Similarity=0.116  Sum_probs=87.9

Q ss_pred             eEEccC-CCCeeEEEeC-eEeee-ccEEEeeccccccceeEEEEEecccceeEEeecc--ceeeEEEEEEEEcCCeeEEe
Q psy15738         28 IMFADS-RPESTFWIFG-KLITS-CSYIILATSLLHYLSYILAMEKEEEERKKKKKRK--KRKKKKKKKEKRIPPRIIYV  102 (187)
Q Consensus        28 ~~~~~~-~~~~~~w~~~-~~~~~-~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~--~~~~~~~~l~v~~~p~~~~~  102 (187)
                      |.+.+. +.....|+++ ..+.. .++.+..   ......|..++.+|.|.|+|.+..  +.....+.|.|..+|.+.  
T Consensus        28 C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~--  102 (317)
T 2y25_A           28 CKVANIKKETHIVWYKDEREISVDEKHDFKD---GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELM--  102 (317)
T ss_dssp             EEEESCCTTCEEEEEETTEEECCSCC--------CCEEEEETTCCSTTCSCEEEEEESSSCEEEEEECCSTHHHHHHH--
T ss_pred             EEEcCCCCCCEEEEEECCeEcCCCCcEEEEC---CeEEEEEccCCcccCeEEEEEEECCCCcEEEEEEEEEecCcccc--
Confidence            444444 4456677644 44432 2222211   112344678899999999996543  333344444443333221  


Q ss_pred             cCCceEEEecCCcEEEEeEecc----------CCCCcEEEEeCCeeCCCCc-EEE--eC--cEEEEecCCCCCCeEEEEE
Q psy15738        103 SGAGKVEVKKGYSVTLECKADG----------NPVPNITWTRKNNNLPGGE-YSY--SG--NSLTVRHTNRHSAGIYLCV  167 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g----------~p~p~~~W~~~~~~~~~~~-~~~--~~--~~l~i~~~~~~d~g~y~C~  167 (187)
                      ..+....+..|+.+.|.|.+.+          .|.+.+.|++++..+.... ...  ..  ..|.|.++...|.|.|.|.
T Consensus       103 ~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  182 (317)
T 2y25_A          103 MEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVME  182 (317)
T ss_dssp             HHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEE
T ss_pred             ccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEE
Confidence            0011122334555555555555          6889999999998876543 221  11  3499999999999999999


Q ss_pred             EecCCCCcceeeEEEE
Q psy15738        168 ANNMVGSSAAASIALH  183 (187)
Q Consensus       168 ~~n~~g~~~s~~~~l~  183 (187)
                      |.|..|.. +..+.|.
T Consensus       183 a~n~~g~~-~~~~~l~  197 (317)
T 2y25_A          183 LFDGKTGH-QKTVDLS  197 (317)
T ss_dssp             EECSSCEE-EEEEEEC
T ss_pred             EEeCCceE-EEEEEEe
Confidence            99988876 4565554

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.61  E-value=9.7e-15  Score=89.60  Aligned_cols=90  Identities=27%  Similarity=0.448  Sum_probs=72.5

Q ss_pred             EcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCC--CcEEE-e-C-c--EEEEecCCCCCCeEEEE
Q psy15738         94 RIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG--GEYSY-S-G-N--SLTVRHTNRHSAGIYLC  166 (187)
Q Consensus        94 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~--~~~~~-~-~-~--~l~i~~~~~~d~g~y~C  166 (187)
                      ..+|.+  ...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..  .+... . . +  .|.|.++..+|+|.|.|
T Consensus        13 ~~~p~f--~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (116)
T 2kkq_A           13 KRAPMF--IYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTV   90 (116)
T ss_dssp             CBCCCB--SSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCCeE--EeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEE
Confidence            345666  3445567899999999999999999999999999988754  23322 1 1 1  79999999999999999


Q ss_pred             EEecCCCCcceeeEEEEEEe
Q psy15738        167 VANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       167 ~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .|.|..|.. +..+.|.|..
T Consensus        91 ~a~N~~G~~-~~~~~l~V~~  109 (116)
T 2kkq_A           91 SAVNEAGVT-TCNTRLDVTA  109 (116)
T ss_dssp             EEEETTEEE-EEEEEEEEEC
T ss_pred             EEEcCCCeE-EEEEEEEEeC
Confidence            999999987 6788888864

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.61  E-value=2.8e-14  Score=99.28  Aligned_cols=111  Identities=14%  Similarity=0.199  Sum_probs=76.0

Q ss_pred             ceeEEEEEecccceeEEeeccc------eeeEEEEEEEEc--------------------CCeeEEecCCceEEEecCCc
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK------RKKKKKKKEKRI--------------------PPRIIYVSGAGKVEVKKGYS  115 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~------~~~~~~~l~v~~--------------------~p~~~~~~~~~~~~~~~g~~  115 (187)
                      .+.|..++.+|+|.|+|.+...      .......|.|..                    +|.+  ...+....+.+|+.
T Consensus        77 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~p~~~~v~~G~~  154 (256)
T 3tf7_C           77 HLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAV--TQSPRNKVTVTGEN  154 (256)
T ss_dssp             EEEESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCE--EESCSEEEEETTCC
T ss_pred             EEEECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEE--EecCCEEEEeCCCc
Confidence            3457888999999999955432      223345677764                    2333  34455667789999


Q ss_pred             EEEEeEeccCCCCcEEEEeCCeeCC------------------CCcEEE-----eCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        116 VTLECKADGNPVPNITWTRKNNNLP------------------GGEYSY-----SGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       116 ~~l~C~~~g~p~p~~~W~~~~~~~~------------------~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      +.|.|.+.+. .+.+.|++......                  ..++..     ....|.|.++..+|+|.|.|.|.|..
T Consensus       155 v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~  233 (256)
T 3tf7_C          155 VTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAP  233 (256)
T ss_dssp             EEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEET
T ss_pred             EEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCC
Confidence            9999999886 67899998431100                  011111     12479999999999999999999976


Q ss_pred             CCc
Q psy15738        173 GSS  175 (187)
Q Consensus       173 g~~  175 (187)
                      |..
T Consensus       234 g~~  236 (256)
T 3tf7_C          234 GQL  236 (256)
T ss_dssp             TEE
T ss_pred             Ccc
Confidence            643

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.61  E-value=4.1e-16  Score=123.59  Aligned_cols=123  Identities=20%  Similarity=0.244  Sum_probs=27.7

Q ss_pred             eeEEEEEecccceeEEeec--cceeeEEEEEEEEcCCeeEEec-CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeC
Q psy15738         63 SYILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIPPRIIYVS-GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNL  139 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~  139 (187)
                      ..|..++.+|.|.|+|...  ....+..+.|.|..+|.+.... .+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+
T Consensus       292 L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l  371 (772)
T 3v2a_R          292 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPL  371 (772)
T ss_dssp             EEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC------------------------------------------
T ss_pred             EEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeC
Confidence            3467888899999999544  3445677889998888764332 122456788999999999999999999999999877


Q ss_pred             CCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcc-eeeEEEEEE
Q psy15738        140 PGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSA-AASIALHVL  185 (187)
Q Consensus       140 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-s~~~~l~v~  185 (187)
                      ...........|.|.++...|.|.|.|.|.|..|... +..+.|.|.
T Consensus       372 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~  418 (772)
T 3v2a_R          372 ESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVY  418 (772)
T ss_dssp             -----------------------------------------------
T ss_pred             CCCceEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEe
Confidence            6543222447899999999999999999999988653 344555543

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.61  E-value=2.4e-15  Score=96.90  Aligned_cols=94  Identities=22%  Similarity=0.452  Sum_probs=74.7

Q ss_pred             EEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEEe-----CcEEEEecCCCCCCeE
Q psy15738         90 KKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSYS-----GNSLTVRHTNRHSAGI  163 (187)
Q Consensus        90 ~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~~-----~~~l~i~~~~~~d~g~  163 (187)
                      .+.+..+|.+..  .+....+..|+.+.|.|.+.|.|.|.+.|++++..+.... +...     ...|.|.++...|.|.
T Consensus        35 ~~~v~~~P~~~~--~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  112 (154)
T 1fhg_A           35 EEKPHVKPYFTK--TILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAK  112 (154)
T ss_dssp             CCCCCEEEEEEE--CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEE
T ss_pred             cccCCCCCeEEc--cCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEE
Confidence            445556676643  3445788999999999999999999999999998876543 2221     2489999999999999


Q ss_pred             EEEEEecCCCCcceeeEEEEEEe
Q psy15738        164 YLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       164 y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      |.|.|.|..|.. +..+.|.|..
T Consensus       113 Y~C~a~N~~G~~-~~~~~l~V~~  134 (154)
T 1fhg_A          113 YTCKAVNSLGEA-TCTAELLVET  134 (154)
T ss_dssp             EEEEEEETTEEE-EEEEEEEEEC
T ss_pred             EEEEEEECCCeE-EEEEEEEEeC
Confidence            999999999987 5788888764

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.61  E-value=5.2e-15  Score=88.10  Aligned_cols=81  Identities=25%  Similarity=0.484  Sum_probs=66.9

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE--eC--cEEEEecCCCCCCeEEEEEEecCCCCcceee
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY--SG--NSLTVRHTNRHSAGIYLCVANNMVGSSAAAS  179 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~--~~--~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~  179 (187)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ...  ..  ..|.|.++..+|+|.|.|.|.|..|.. +..
T Consensus        13 ~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~   91 (99)
T 3puc_A           13 LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSV-SSS   91 (99)
T ss_dssp             CCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEE-EEE
T ss_pred             CccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCcE-eEE
Confidence            445678899999999999999999999999998875442 222  11  279999999999999999999999987 688


Q ss_pred             EEEEEEe
Q psy15738        180 IALHVLC  186 (187)
Q Consensus       180 ~~l~v~~  186 (187)
                      +.|.|..
T Consensus        92 ~~l~V~~   98 (99)
T 3puc_A           92 CKLTIKA   98 (99)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            8888753

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=8.1e-15  Score=89.02  Aligned_cols=89  Identities=24%  Similarity=0.390  Sum_probs=70.4

Q ss_pred             cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC--cEEEe---Cc--EEEEecCCCCCCeEEEEE
Q psy15738         95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG--EYSYS---GN--SLTVRHTNRHSAGIYLCV  167 (187)
Q Consensus        95 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~~~~---~~--~l~i~~~~~~d~g~y~C~  167 (187)
                      .+|.+.  ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...  ++...   .+  .|.|.++...|.|.|.|.
T Consensus         7 ~~P~~~--~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   84 (110)
T 2dm2_A            7 GAPFFE--MKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIM   84 (110)
T ss_dssp             CCCCBS--SCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEE
T ss_pred             CCCEEE--ecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEE
Confidence            355553  3345577899999999999999999999999999887542  33221   22  699999999999999999


Q ss_pred             EecCCCCcceeeEEEEEEe
Q psy15738        168 ANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       168 ~~n~~g~~~s~~~~l~v~~  186 (187)
                      |.|..|.. +..+.|.|..
T Consensus        85 a~N~~g~~-~~~~~l~V~~  102 (110)
T 2dm2_A           85 AANPQGRI-SCTGRLMVQA  102 (110)
T ss_dssp             EECTTCCE-EECCCEEEEC
T ss_pred             EEECCCeE-EEEEEEEEEC
Confidence            99999988 5788888754

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.60  E-value=5.4e-15  Score=87.48  Aligned_cols=78  Identities=23%  Similarity=0.469  Sum_probs=65.6

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      +....+.+|+.+.|.|.+.|.| |.+.|++++..+... +.......|.|.++..+|+|.|.|.|.|..|.. +..+.|.
T Consensus        16 ~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~   93 (95)
T 2ckn_A           16 VESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSD-TTYFSVN   93 (95)
T ss_dssp             BCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTEEE-EEEEEEE
T ss_pred             cceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCCcE-EEEEEEE
Confidence            4456788999999999999987 799999999877543 344457899999999999999999999999987 5777776


Q ss_pred             E
Q psy15738        184 V  184 (187)
Q Consensus       184 v  184 (187)
                      |
T Consensus        94 V   94 (95)
T 2ckn_A           94 V   94 (95)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.60  E-value=6.1e-14  Score=97.92  Aligned_cols=111  Identities=20%  Similarity=0.216  Sum_probs=76.8

Q ss_pred             EEEecccce--eEEeec--cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC
Q psy15738         67 AMEKEEEER--KKKKKR--KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG  142 (187)
Q Consensus        67 ~v~~~d~g~--y~c~~~--~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~  142 (187)
                      .+...|.|.  |+|.+.  ....+..+.|.|...|.......  ...+.+|+.+.|.|.+.  |.|.+.|  +|..+...
T Consensus        65 ~~~~~d~g~g~Y~C~a~n~~~~~~~~~~l~V~~~p~p~~~~~--~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~  138 (265)
T 2oz4_A           65 SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT--KPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPL  138 (265)
T ss_dssp             EECGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEES--CSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCC
T ss_pred             ccccccCCcceEEEEEecCCCCcEEEEEEEEeCCCCceeecC--CceecCCCcEEEEEEcc--CCCEEEE--CCEEccCC
Confidence            336678774  999443  34556778888876443322222  34577899999999998  8899999  77666332


Q ss_pred             cEEEeCcEEEEecCCCCCCeEEEEEEecCC-CCcc--eeeEEEEEEe
Q psy15738        143 EYSYSGNSLTVRHTNRHSAGIYLCVANNMV-GSSA--AASIALHVLC  186 (187)
Q Consensus       143 ~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~-g~~~--s~~~~l~v~~  186 (187)
                      .   ..+.|.+..+...|.|.|.|.|.|.. |...  +..+.|.|.+
T Consensus       139 ~---~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~  182 (265)
T 2oz4_A          139 G---PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY  182 (265)
T ss_dssp             S---SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             C---CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEe
Confidence            2   22567888888889999999998654 6542  2566777754

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.60  E-value=4.9e-14  Score=95.45  Aligned_cols=112  Identities=17%  Similarity=0.201  Sum_probs=76.9

Q ss_pred             ceeEEEEEecccceeEEeeccce----eeEEEEEEEE---cCCeeEEecCCceEEEecCCcEEEEeEeccC-CCC-cEEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKKR----KKKKKKKEKR---IPPRIIYVSGAGKVEVKKGYSVTLECKADGN-PVP-NITW  132 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~~----~~~~~~l~v~---~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~~~W  132 (187)
                      .+.|..++.+|.|.|+|.+....    ......|.|.   .+|.+......  .....|+.+.|.|.+.|. |+| .+.|
T Consensus        73 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~v~L~C~~~g~~P~~~~v~W  150 (216)
T 2xzc_L           73 TLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPS--DEQLKSGTASVVCLLNNFYPREAKVQW  150 (216)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCC--HHHHHTTEEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCC--hhhccCCcEEEEEEEEeEcCCceEEEE
Confidence            34478899999999999554322    2344567775   34555422221  112358899999999884 554 8999


Q ss_pred             EeCCeeCCCC-cEEE-----------eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        133 TRKNNNLPGG-EYSY-----------SGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       133 ~~~~~~~~~~-~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +++|..+... ....           ..+.|.|..+..+|.|.|.|.|.|.....
T Consensus       151 ~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  205 (216)
T 2xzc_L          151 KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  205 (216)
T ss_dssp             EETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             EECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence            9999887655 1110           12368899999999999999999987544

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.60  E-value=1.8e-14  Score=100.25  Aligned_cols=135  Identities=12%  Similarity=0.159  Sum_probs=88.1

Q ss_pred             ccEEEeeccc-cccceeEEEEEecccceeEEeeccc------eeeEEEEEEEEc----------------CCeeEEecCC
Q psy15738         49 CSYIILATSL-LHYLSYILAMEKEEEERKKKKKRKK------RKKKKKKKEKRI----------------PPRIIYVSGA  105 (187)
Q Consensus        49 ~~~~~~~~~~-~~~~~~~~~v~~~d~g~y~c~~~~~------~~~~~~~l~v~~----------------~p~~~~~~~~  105 (187)
                      .++.+..... ....+.|..++.+|+|.|+|.....      .......|.|..                ++.+.  ..+
T Consensus        68 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~--~~p  145 (256)
T 3umt_A           68 GKAILTVDKSSSTAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLT--QSP  145 (256)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEE--EEC
T ss_pred             ceEEEEEecCCCEEEEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEE--cCC
Confidence            4555443322 2223458889999999999955432      234456777764                33332  334


Q ss_pred             ceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeCC-------------CCcEEE----eCcEEEEecCCCCCCeEEEE
Q psy15738        106 GKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNLP-------------GGEYSY----SGNSLTVRHTNRHSAGIYLC  166 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~~-------------~~~~~~----~~~~l~i~~~~~~d~g~y~C  166 (187)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++..  ....             ..+...    ....|.|.++..+|+|.|.|
T Consensus       146 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C  225 (256)
T 3umt_A          146 SSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYC  225 (256)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEE
T ss_pred             CeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEE
Confidence            4567889999999999999988899999842  1110             122211    12359999999999999999


Q ss_pred             EEecCCCCcceeeEEEEEE
Q psy15738        167 VANNMVGSSAAASIALHVL  185 (187)
Q Consensus       167 ~~~n~~g~~~s~~~~l~v~  185 (187)
                      .+.|..+..-.....|.|.
T Consensus       226 ~~~~~~~~~fg~gt~L~V~  244 (256)
T 3umt_A          226 LQYASSPPTFGGGTKLEIK  244 (256)
T ss_dssp             EECSSSSCEECCCEEEEEC
T ss_pred             EEeeCCCcEECCCEEEEEE
Confidence            9998654332345566653

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.59  E-value=3.7e-15  Score=101.26  Aligned_cols=111  Identities=15%  Similarity=0.161  Sum_probs=74.0

Q ss_pred             ceeEEEEEecccceeEEeeccc------eeeEEEEEEEEcC----CeeEEecCCceEEEecCCcEEEEeEecc-CCCC-c
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK------RKKKKKKKEKRIP----PRIIYVSGAGKVEVKKGYSVTLECKADG-NPVP-N  129 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~------~~~~~~~l~v~~~----p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p-~  129 (187)
                      ...|.+++.+|.|.|+|.....      .......|.|...    |.+.....  ...+..|+.+.|.|.+.| .|.| .
T Consensus        80 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~--~~~~~~g~~v~L~C~~~g~~P~p~~  157 (219)
T 1c1e_H           80 YLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAP--GSAAQTNSMVTLGCLVKGYFPEPVT  157 (219)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECC--CSSSCCSSEEEEEEEEEEEBSSCCE
T ss_pred             EEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecC--ccccccCCeEEEEEEcccccCCCeE
Confidence            4458899999999999955432      2234567777653    44432221  123467999999999998 7888 9


Q ss_pred             EEEEeCCeeCCCC---c-----EEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        130 ITWTRKNNNLPGG---E-----YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       130 ~~W~~~~~~~~~~---~-----~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +.|++++..+...   .     .....+.|.|.. ...|.|.|.|.|.|..+..
T Consensus       158 v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~-~~~d~g~Y~C~a~n~~~~~  210 (219)
T 1c1e_H          158 VTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPS-SPRPSETVTCNVAHPASST  210 (219)
T ss_dssp             EEEGGGTBCTTEEECCCEESSSCEEEEEEEEEES-SSTTTSCCEEEEEEGGGTE
T ss_pred             EEEEeCCcccceEecCCcccCCeEEEEEEEEEec-ccCCCCEEEEEEEeCCCCc
Confidence            9999998754210   0     011224678844 4446699999999987754

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.59  E-value=3.5e-15  Score=106.80  Aligned_cols=118  Identities=14%  Similarity=0.092  Sum_probs=75.9

Q ss_pred             eeEEEEEecccceeEEeeccce-------eeEEEEEEEEc---CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEE
Q psy15738         63 SYILAMEKEEEERKKKKKRKKR-------KKKKKKKEKRI---PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITW  132 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~-------~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W  132 (187)
                      ..|..++.+|.|.|+|.+....       .+..+.|.|..   +|.+.....   ..+.+|+.+.|.|.+. .|.+.+.|
T Consensus       176 L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~---~~v~~G~~v~L~C~~~-~~~~~~~W  251 (316)
T 3vh8_G          176 FSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG---PKVQAGESVTLSCSSR-SSYDMYHL  251 (316)
T ss_dssp             EEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESC---SCCCTTSCCEEEEEES-SCCSEEEE
T ss_pred             EEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCC---CeecCCCcEEEEEECC-CCCcEEEE
Confidence            4477889999999999655321       25667777763   344433221   2467899999999997 47789999


Q ss_pred             EeCCeeCCCCcEE--E----eCcEEEEecCCCCCCeEEEEEEecCCCC----cceeeEEEEEEe
Q psy15738        133 TRKNNNLPGGEYS--Y----SGNSLTVRHTNRHSAGIYLCVANNMVGS----SAAASIALHVLC  186 (187)
Q Consensus       133 ~~~~~~~~~~~~~--~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~----~~s~~~~l~v~~  186 (187)
                      +++|..+......  .    ....|.|.+++  |+|.|.|.+.|..+.    ..|..+.|.|..
T Consensus       252 ~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  313 (316)
T 3vh8_G          252 SREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTG  313 (316)
T ss_dssp             EETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC----
T ss_pred             EECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeC
Confidence            9999766432111  1    12578899998  999999999997654    336777777754

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.59  E-value=6.9e-14  Score=97.26  Aligned_cols=111  Identities=14%  Similarity=0.194  Sum_probs=76.4

Q ss_pred             ceeEEEEEecccceeEEeeccc------eeeEEEEEEEEcC------------CeeEEecCCceEEEecCCcEEEEeEec
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK------RKKKKKKKEKRIP------------PRIIYVSGAGKVEVKKGYSVTLECKAD  123 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~------~~~~~~~l~v~~~------------p~~~~~~~~~~~~~~~g~~~~l~C~~~  123 (187)
                      .+.|..++.+|+|.|+|.+...      .......|.|..+            +.......+....+.+|+.+.|.|.+.
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~  166 (257)
T 3gkz_A           87 YLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSAS  166 (257)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEES
T ss_pred             EEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEc
Confidence            4558889999999999955432      2234567777754            122224445567788999999999999


Q ss_pred             cCCCC-cEEEEeCC--eeCC-------------CCcEEE----eCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        124 GNPVP-NITWTRKN--NNLP-------------GGEYSY----SGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       124 g~p~p-~~~W~~~~--~~~~-------------~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      +.|.+ .+.|++..  ....             ..+...    ....|.|.++..+|+|.|.|.+.+..
T Consensus       167 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  235 (257)
T 3gkz_A          167 SSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSF  235 (257)
T ss_dssp             SCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             cCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCC
Confidence            98877 89999842  2111             112211    12359999999999999999999754

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=9.7e-15  Score=89.81  Aligned_cols=88  Identities=26%  Similarity=0.437  Sum_probs=70.9

Q ss_pred             cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCC--CcE-EEeCcEEEEecCCCCCCeEEEEEEecC
Q psy15738         95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG--GEY-SYSGNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus        95 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~--~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      .+|.+.  ..+....+..|+.+.|.|.+.|.|.+.+.|++++..+..  .+. ....+.|.|.++..+|+|.|.|.|.|.
T Consensus         7 ~pP~i~--~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   84 (118)
T 2eo9_A            7 GPPVIR--QGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTP   84 (118)
T ss_dssp             CSCCCS--BCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECS
T ss_pred             CCCEEE--cCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcC
Confidence            355553  334557789999999999999999999999999987753  222 235678999999999999999999999


Q ss_pred             CCCcceeeEEEEEE
Q psy15738        172 VGSSAAASIALHVL  185 (187)
Q Consensus       172 ~g~~~s~~~~l~v~  185 (187)
                      .|.. +..+.|.|.
T Consensus        85 ~g~~-~~~~~l~V~   97 (118)
T 2eo9_A           85 SGEA-TWSAYIEVQ   97 (118)
T ss_dssp             SCEE-EEECCEEEE
T ss_pred             CCcE-EEEEEEEEE
Confidence            9987 567777775

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.59  E-value=1.1e-14  Score=100.61  Aligned_cols=125  Identities=14%  Similarity=0.146  Sum_probs=82.0

Q ss_pred             ccEEEeeccccccceeEEEEEecccceeEEeec------cceeeEEEEEEEE------cCCeeEEecCCceEEEecCCcE
Q psy15738         49 CSYIILATSLLHYLSYILAMEKEEEERKKKKKR------KKRKKKKKKKEKR------IPPRIIYVSGAGKVEVKKGYSV  116 (187)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~------~~~~~~~~~l~v~------~~p~~~~~~~~~~~~~~~g~~~  116 (187)
                      .++.+...+.....+.|.+++.+|.|.|.|...      .........|.|.      .+|.+... .+....+..|+.+
T Consensus        64 ~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~-~~~~~~~~~g~~v  142 (245)
T 4ei6_B           64 DQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVF-EPSEAEISHTQKA  142 (245)
T ss_dssp             TTEEEECCTTSCEEEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEE-CCCHHHHHHHSEE
T ss_pred             CCEEEEeccCceEEEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEe-CCCcccccCCCce
Confidence            455554433333455588999999999999554      2334455677776      34544322 2222234568999


Q ss_pred             EEEeEeccC-CCC-cEEEEeCCeeCCCCcEE----------------EeCcEEEEecCCCCC-CeEEEEEEecCCCC
Q psy15738        117 TLECKADGN-PVP-NITWTRKNNNLPGGEYS----------------YSGNSLTVRHTNRHS-AGIYLCVANNMVGS  174 (187)
Q Consensus       117 ~l~C~~~g~-p~p-~~~W~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~d-~g~y~C~~~n~~g~  174 (187)
                      .|.|.+.|. |.+ .+.|+++|..+......                .....|.+......| .|.|.|.+.|....
T Consensus       143 ~l~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~  219 (245)
T 4ei6_B          143 TLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (245)
T ss_dssp             EEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EEEEEEeeEeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence            999999885 444 79999999877543211                112347888877777 89999999987543

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.58  E-value=5.9e-15  Score=91.08  Aligned_cols=73  Identities=21%  Similarity=0.375  Sum_probs=61.1

Q ss_pred             cCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE---E---------eCcEEEEecCCCCCCeEEEEEEecCCCCcceee
Q psy15738        112 KGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS---Y---------SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAAS  179 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~---~---------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~  179 (187)
                      .+..+.|.|.+.|.|.|.++|+++|..+......   .         ..+.|.|.++...|+|.|+|.|.|..|.. +.+
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~~t   92 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA-SAS   92 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEE-EEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeE-EEE
Confidence            5678899999999999999999999988665321   1         13579999999999999999999999988 578


Q ss_pred             EEEEEE
Q psy15738        180 IALHVL  185 (187)
Q Consensus       180 ~~l~v~  185 (187)
                      +.|.|.
T Consensus        93 ~~l~v~   98 (126)
T 1he7_A           93 IMAAFM   98 (126)
T ss_dssp             EEECCC
T ss_pred             EEEEEE
Confidence            777664

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.58  E-value=5.8e-14  Score=96.55  Aligned_cols=109  Identities=17%  Similarity=0.269  Sum_probs=75.3

Q ss_pred             ceeEEEEEecccceeEEeeccc---eeeEEEEEEEEcCC-----eeEEecCCceEEEecCCcEEEEeEeccCCC--CcEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK---RKKKKKKKEKRIPP-----RIIYVSGAGKVEVKKGYSVTLECKADGNPV--PNIT  131 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~---~~~~~~~l~v~~~p-----~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~~~  131 (187)
                      .+.|..++.+|+|.|+|.+...   .......|.|..++     ... ...+....+.+|+.+.|.|.+.+.|.  +.+.
T Consensus        76 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~-~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~  154 (240)
T 1moe_A           76 TLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQ-LQQSGAELVEPGASVKLSCTASGFNIKDTYMH  154 (240)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCE-EEECCCEEECTTCCEEEEEEEESSCGGGSCEE
T ss_pred             EEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEE-EeCCCceEEeCCCcEEEEEEEcCccCCCCEEE
Confidence            3447889999999999955433   23455678887643     222 22234467889999999999999874  5899


Q ss_pred             EEeCC--eeC------------------CCCcEEEe------CcEEEEecCCCCCCeEEEEEEecC
Q psy15738        132 WTRKN--NNL------------------PGGEYSYS------GNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       132 W~~~~--~~~------------------~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      |+++.  ..+                  ...+....      ...|.|.++..+|+|.|.|.|.+.
T Consensus       155 W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  220 (240)
T 1moe_A          155 WVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY  220 (240)
T ss_dssp             EEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred             EEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence            99962  211                  01122211      146999999999999999999953

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.58  E-value=8e-15  Score=104.74  Aligned_cols=121  Identities=12%  Similarity=0.115  Sum_probs=84.4

Q ss_pred             ceeEEEEEecccceeEEee---ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEec-cCCCCcEEEEeCCe
Q psy15738         62 LSYILAMEKEEEERKKKKK---RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKAD-GNPVPNITWTRKNN  137 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~---~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~~~W~~~~~  137 (187)
                      .+.|..++.+|.|.|+|..   .....+..+.|.+..+|.......  ...+..++.+.+.|.+. +.|.|.+.|++++.
T Consensus        80 sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~--~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~  157 (313)
T 4fqp_A           80 SLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ--KVQLTGEPVPMARCVSTGGRPPAQITWHSDLG  157 (313)
T ss_dssp             CEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEEC--CBCCCSSCEEEEEEEEEEEBSCCEEEEEETTC
T ss_pred             EEEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceeccc--ceEeecCceEEEEEEccCccCCcEEEeecCCc
Confidence            3448889999999999943   345566677788888887654332  23456678888999865 77899999999987


Q ss_pred             eCCCCcEE--------EeCcEEEEecCCCCCCeEEEEEEecCCCCcc-eeeEEEEE
Q psy15738        138 NLPGGEYS--------YSGNSLTVRHTNRHSAGIYLCVANNMVGSSA-AASIALHV  184 (187)
Q Consensus       138 ~~~~~~~~--------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-s~~~~l~v  184 (187)
                      .+......        ...+.|.+..+...|.|.|.|.|.|..+... +..+.|.|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V  213 (313)
T 4fqp_A          158 GMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTV  213 (313)
T ss_dssp             CEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCB
T ss_pred             cccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeeccc
Confidence            55322111        1124588888888999999999999876642 33444433

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.58  E-value=9e-15  Score=101.87  Aligned_cols=117  Identities=15%  Similarity=0.100  Sum_probs=80.7

Q ss_pred             eeEEEEEecccceeEEeecc-------ceeeEEEEEEEEcC---CeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEE
Q psy15738         63 SYILAMEKEEEERKKKKKRK-------KRKKKKKKKEKRIP---PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITW  132 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~-------~~~~~~~~l~v~~~---p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W  132 (187)
                      ..|..++.+|+|.|+|.+..       ...+..+.|.|...   |.+..  .+. ..+.+|+.++|.|.+.+. ++.+.|
T Consensus        64 L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~--~p~-~~V~~G~~vtL~C~~~~~-~~~~~w  139 (257)
T 1b6u_A           64 FSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSA--QPG-PTVLAGESVTLSCSSRSS-YDMYHL  139 (257)
T ss_dssp             EEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEEC--SSC-TTCBTTCEEEEEEECSSC-CSEEEE
T ss_pred             EEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEc--cCC-CccCCCCEEEEEEeCCCC-CcEEEE
Confidence            34678899999999996532       23456778888753   34432  222 246889999999999875 468999


Q ss_pred             EeCCeeCCCCcE--E----EeCcEEEEecCCCCCCeEEEEEEecCCC----CcceeeEEEEEE
Q psy15738        133 TRKNNNLPGGEY--S----YSGNSLTVRHTNRHSAGIYLCVANNMVG----SSAAASIALHVL  185 (187)
Q Consensus       133 ~~~~~~~~~~~~--~----~~~~~l~i~~~~~~d~g~y~C~~~n~~g----~~~s~~~~l~v~  185 (187)
                      +|+|..+.....  .    .....|.|.+++  |+|.|.|.+.+...    ...|..+.|.|.
T Consensus       140 ~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~  200 (257)
T 1b6u_A          140 SREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVT  200 (257)
T ss_dssp             EETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCB
T ss_pred             EECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEe
Confidence            999976532211  0    124679999998  99999999997532    233566777664

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.58  E-value=4.2e-15  Score=89.78  Aligned_cols=88  Identities=26%  Similarity=0.514  Sum_probs=70.4

Q ss_pred             cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEEe----CcEEEEecCCCCCCeEEEEEEe
Q psy15738         95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSYS----GNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus        95 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~~----~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      .+|.+.  ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... +....    ...|.|.++...|+|.|.|.|.
T Consensus        13 ~~~~i~--~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   90 (106)
T 1nct_A           13 LAARIL--TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE   90 (106)
T ss_dssp             CCCEEE--ECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCB
T ss_pred             CCCEEE--ECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEE
Confidence            344443  3445678899999999999999999999999999877544 22221    3689999999999999999999


Q ss_pred             cCCCCcceeeEEEEEE
Q psy15738        170 NMVGSSAAASIALHVL  185 (187)
Q Consensus       170 n~~g~~~s~~~~l~v~  185 (187)
                      |..|.. +..+.|.|.
T Consensus        91 N~~G~~-~~~~~l~V~  105 (106)
T 1nct_A           91 NSEGKQ-EAEFTLTIQ  105 (106)
T ss_dssp             CSSCBC-CEEEEEEEC
T ss_pred             eCCCeE-EEEEEEEEE
Confidence            999987 578888774

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.58  E-value=4.1e-15  Score=91.51  Aligned_cols=90  Identities=22%  Similarity=0.381  Sum_probs=67.2

Q ss_pred             EEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE--------eCcEEEEecCCCCC
Q psy15738         90 KKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY--------SGNSLTVRHTNRHS  160 (187)
Q Consensus        90 ~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~--------~~~~l~i~~~~~~d  160 (187)
                      .|+|..+|.+.....   .  .......|.|.+.|.|.|.+.|+++|..+.... ...        ..+.|.|.++...|
T Consensus         2 ~L~V~~pP~i~~~~~---~--~~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   76 (118)
T 1wwc_A            2 ALTVYYPPRVVSLEE---P--ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYN   76 (118)
T ss_dssp             --CCCCCCCCCCCCC---C--CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGG
T ss_pred             EEEEecCCceeccCC---C--eeccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhc
Confidence            577788888642211   1  122567889999999999999999999886553 211        24579999999999


Q ss_pred             CeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        161 AGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       161 ~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      +|.|.|.|.|..|.. +..+.|.|.
T Consensus        77 ~G~Y~C~a~N~~G~~-~~~~~l~v~  100 (118)
T 1wwc_A           77 NGNYTLIAKNPLGTA-NQTINGHFL  100 (118)
T ss_dssp             CEEEEEEEEETTEEE-EEEEEECCS
T ss_pred             CEEEEEEEECCCCeE-eeEEEEEEc
Confidence            999999999999987 577776553

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.58  E-value=2e-14  Score=98.91  Aligned_cols=124  Identities=17%  Similarity=0.191  Sum_probs=81.5

Q ss_pred             ccEEEeeccccccceeEEEEEecccceeEEeec-----cceeeEEEEEEEE------cCCeeEEecCCceEEEecCCcEE
Q psy15738         49 CSYIILATSLLHYLSYILAMEKEEEERKKKKKR-----KKRKKKKKKKEKR------IPPRIIYVSGAGKVEVKKGYSVT  117 (187)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~-----~~~~~~~~~l~v~------~~p~~~~~~~~~~~~~~~g~~~~  117 (187)
                      .++.+...........|.+++.+|+|.|.|...     .........|.|.      .+|.+... .+....+..|+.+.
T Consensus        63 ~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~-~~~~~~~~~g~~v~  141 (240)
T 3q5y_A           63 SRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLF-EPSKAEIANKQKAT  141 (240)
T ss_dssp             TTEEEEECTTSCEEEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEE-CCCHHHHHHHSEEE
T ss_pred             CeEEEEeCCCCEEEEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEe-CCchhhcccCCceE
Confidence            455555433333445588999999999999664     2233445567776      34444322 22222344689999


Q ss_pred             EEeEecc-CCCC-cEEEEeCCeeCCCCcEE------E------eCcEEEEecCCCCC-CeEEEEEEecCCC
Q psy15738        118 LECKADG-NPVP-NITWTRKNNNLPGGEYS------Y------SGNSLTVRHTNRHS-AGIYLCVANNMVG  173 (187)
Q Consensus       118 l~C~~~g-~p~p-~~~W~~~~~~~~~~~~~------~------~~~~l~i~~~~~~d-~g~y~C~~~n~~g  173 (187)
                      |.|.+.| .|.+ .+.|+++|..+......      .      ..+.|.+......| .|.|.|.+.|...
T Consensus       142 L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~  212 (240)
T 3q5y_A          142 LVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGL  212 (240)
T ss_dssp             EEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             EEEEEeeEECCCeEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence            9999998 4555 68999999887543221      1      12348888888888 6799999998754

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.58  E-value=9.9e-15  Score=100.81  Aligned_cols=126  Identities=16%  Similarity=0.153  Sum_probs=82.6

Q ss_pred             ccEEEeeccccccceeEEEEEecccceeEEeecc------ceeeEEEEEEEEc------CCeeEEecCCceEEEecCCcE
Q psy15738         49 CSYIILATSLLHYLSYILAMEKEEEERKKKKKRK------KRKKKKKKKEKRI------PPRIIYVSGAGKVEVKKGYSV  116 (187)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~------~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~  116 (187)
                      .++.+...+.....+.|..++.+|.|.|.|....      ........|.|..      +|.+... .+....+..|+.+
T Consensus        65 ~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~-~~~~~~~~~g~~v  143 (246)
T 4dzb_B           65 DKFLINHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVF-EPSEAEISHTQKA  143 (246)
T ss_dssp             GGEEEEEEETTEEEEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEE-CCCHHHHHHHSEE
T ss_pred             CcEEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEee-cCCchhccCCCcE
Confidence            4555544222233455889999999999995542      2333455777763      4544322 2222234568999


Q ss_pred             EEEeEeccCCCC--cEEEEeCCeeCCCCcEE----------------EeCcEEEEecCCCCC-CeEEEEEEecCCCCc
Q psy15738        117 TLECKADGNPVP--NITWTRKNNNLPGGEYS----------------YSGNSLTVRHTNRHS-AGIYLCVANNMVGSS  175 (187)
Q Consensus       117 ~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~d-~g~y~C~~~n~~g~~  175 (187)
                      .|.|.+.|.|++  .+.|+++|..+......                ...+.|.+......| .|.|.|.|.|.....
T Consensus       144 ~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~  221 (246)
T 4dzb_B          144 TLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE  221 (246)
T ss_dssp             EEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred             EEEEEEccCcCCceEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCC
Confidence            999999987665  89999999877543221                112347888887777 999999999976543

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.58  E-value=4.9e-14  Score=83.57  Aligned_cols=80  Identities=23%  Similarity=0.334  Sum_probs=65.8

Q ss_pred             CceEEEecCCcEEEEeEeccC-CCCcEEEEeCCeeCCCCc-EEE--eCc--EEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738        105 AGKVEVKKGYSVTLECKADGN-PVPNITWTRKNNNLPGGE-YSY--SGN--SLTVRHTNRHSAGIYLCVANNMVGSSAAA  178 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~-p~p~~~W~~~~~~~~~~~-~~~--~~~--~l~i~~~~~~d~g~y~C~~~n~~g~~~s~  178 (187)
                      +....+.+|+.+.|.|.+.|. |.|.+.|++++..+.... ...  ..+  .|.|.++..+|.|.|.|.|.|..|.. +.
T Consensus         8 ~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~   86 (97)
T 2bk8_A            8 IMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGED-SS   86 (97)
T ss_dssp             CCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE-EE
T ss_pred             CcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeE-eE
Confidence            445678899999999999997 889999999998875543 222  333  89999999999999999999999988 56


Q ss_pred             eEEEEEE
Q psy15738        179 SIALHVL  185 (187)
Q Consensus       179 ~~~l~v~  185 (187)
                      .+.|.|.
T Consensus        87 ~~~l~V~   93 (97)
T 2bk8_A           87 YAELFVK   93 (97)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEE
Confidence            7777763

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.58  E-value=2.4e-14  Score=86.69  Aligned_cols=83  Identities=19%  Similarity=0.260  Sum_probs=64.4

Q ss_pred             ecCCceEEEecCCcEEEEeEeccCCC---CcEEEEeCCeeC-C---CCcEEE----------eCcEEEEecCCCCCCeEE
Q psy15738        102 VSGAGKVEVKKGYSVTLECKADGNPV---PNITWTRKNNNL-P---GGEYSY----------SGNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       102 ~~~~~~~~~~~g~~~~l~C~~~g~p~---p~~~W~~~~~~~-~---~~~~~~----------~~~~l~i~~~~~~d~g~y  164 (187)
                      ...+....+..|+.+.|.|.+.|.|.   |.+.|++++... .   ..+...          ....|.|.++..+|+|.|
T Consensus         8 ~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   87 (108)
T 3cx2_A            8 VMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSY   87 (108)
T ss_dssp             SBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEE
T ss_pred             EeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEE
Confidence            34455678899999999999999998   999999987221 1   112211          135799999999999999


Q ss_pred             EEEEecCCCCcceeeEEEEEE
Q psy15738        165 LCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       165 ~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      .|.|.|..|.. +..+.|.|.
T Consensus        88 ~C~a~N~~G~~-~~~~~L~V~  107 (108)
T 3cx2_A           88 RCEVSTKDKFD-CSNFNLTVH  107 (108)
T ss_dssp             EEEEECSSCEE-EEEEEEEEE
T ss_pred             EEEEecCCCce-EEEEEEEEe
Confidence            99999999988 688888874

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.58  E-value=8.2e-15  Score=102.54  Aligned_cols=125  Identities=14%  Similarity=0.103  Sum_probs=81.9

Q ss_pred             ccEEEeeccccccceeEEEEEecccceeEEeecc----ceeeEEEEEEEEc------CCeeEEecCCceEEEecCCcEEE
Q psy15738         49 CSYIILATSLLHYLSYILAMEKEEEERKKKKKRK----KRKKKKKKKEKRI------PPRIIYVSGAGKVEVKKGYSVTL  118 (187)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~----~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l  118 (187)
                      .++.+...........|.+++.+|+|.|+|....    ........|.|..      +|.+... .+....+..|+.+.|
T Consensus        88 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~-~~~~~~~~~g~~v~L  166 (268)
T 3pl6_D           88 DRFFAVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVF-EPSEAEISHTQKATL  166 (268)
T ss_dssp             TTEEEECTTSSSEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEE-CCCHHHHHHHSEEEE
T ss_pred             CcEEEEecCCCEEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEe-CCCcccccCCCceEE
Confidence            4555554333334455889999999999995542    2334455677765      4544322 222223446899999


Q ss_pred             EeEeccCCCC--cEEEEeCCeeCCCCcE----------------EEeCcEEEEecCCCCC-CeEEEEEEecCCCC
Q psy15738        119 ECKADGNPVP--NITWTRKNNNLPGGEY----------------SYSGNSLTVRHTNRHS-AGIYLCVANNMVGS  174 (187)
Q Consensus       119 ~C~~~g~p~p--~~~W~~~~~~~~~~~~----------------~~~~~~l~i~~~~~~d-~g~y~C~~~n~~g~  174 (187)
                      .|.+.|.+++  .+.|+++|..+.....                ....+.|.+......| .|.|+|.+.|....
T Consensus       167 ~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          167 VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             EEEEEEEBSSCEEEEEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EEEECcccCCCeEEEEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence            9999986654  8999999987744321                1122456777777676 99999999987543

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.57  E-value=2.7e-14  Score=104.01  Aligned_cols=110  Identities=14%  Similarity=0.179  Sum_probs=83.3

Q ss_pred             ceeEEEEEecccceeEEeeccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCC
Q psy15738         62 LSYILAMEKEEEERKKKKKRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG  141 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~  141 (187)
                      ...|..+..+|.|.|+|.+....  ..+.|.|..   +. . .+ ...+.+|+.+.|.|.+.+.|.|.+.|++++...  
T Consensus        68 ~L~I~~v~~~D~G~Y~C~~~n~~--~~~~l~V~~---~~-~-~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~--  137 (363)
T 1wio_A           68 PLIIKNLKIEDSDTYICEVEDQK--EEVQLLVFG---LT-A-NS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN--  137 (363)
T ss_dssp             CEEECSCCGGGCEEEEEEETTEE--EEEEEEEEE---EE-E-SS-CSSEESBSCEEEEEECCTTCCCCEEEECSSSCE--
T ss_pred             EEEECCCCHHHCEEEEEEEEECC--CcEEEEEEe---CC-C-CC-ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc--
Confidence            34488899999999999766553  467777764   21 1 11 135689999999999999999999999987542  


Q ss_pred             CcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        142 GEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       142 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                         ......|.|.++..+|+|.|.|.|.|..+.. +..+.|.|.
T Consensus       138 ---~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~-~~~~~l~v~  177 (363)
T 1wio_A          138 ---IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV-EFKIDIVVL  177 (363)
T ss_dssp             ---EEESSEEEECSBCGGGCEECEEEEEETTEEE-EECCEECEE
T ss_pred             ---cccceEEEEeeCChhcCCEEEEEEecCCCeE-EEEEEEEEe
Confidence               3356889999999999999999999876554 455555554

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.57  E-value=2.8e-14  Score=99.04  Aligned_cols=134  Identities=13%  Similarity=0.131  Sum_probs=86.6

Q ss_pred             ccEEEeeccc-cccceeEEEEEecccceeEEeeccc---eeeEEEEEEEEcC---------------CeeEEecCCceEE
Q psy15738         49 CSYIILATSL-LHYLSYILAMEKEEEERKKKKKRKK---RKKKKKKKEKRIP---------------PRIIYVSGAGKVE  109 (187)
Q Consensus        49 ~~~~~~~~~~-~~~~~~~~~v~~~d~g~y~c~~~~~---~~~~~~~l~v~~~---------------p~~~~~~~~~~~~  109 (187)
                      .++.+..... ....+.|..++.+|+|.|+|.+...   .......|.|...               +.+  ...+....
T Consensus        67 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v--~~~p~~~~  144 (253)
T 3uzq_A           67 GKATITADTSSNTAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVM--TQTPASLA  144 (253)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCE--EEECSEEE
T ss_pred             CcEEEEeecCCCeEEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceE--ECcCCeEE
Confidence            4554443222 1223458889999999999955431   2234567777642               333  23344577


Q ss_pred             EecCCcEEEEeEeccCCCC----cEEEEeCC--eeCC-------------CCcEEE--e--CcEEEEecCCCCCCeEEEE
Q psy15738        110 VKKGYSVTLECKADGNPVP----NITWTRKN--NNLP-------------GGEYSY--S--GNSLTVRHTNRHSAGIYLC  166 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~p~p----~~~W~~~~--~~~~-------------~~~~~~--~--~~~l~i~~~~~~d~g~y~C  166 (187)
                      +.+|+++.|.|.+.+.|.+    .+.|+++.  ....             ..+...  .  ...|.|.++..+|+|.|.|
T Consensus       145 v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C  224 (253)
T 3uzq_A          145 VSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFC  224 (253)
T ss_dssp             ECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEE
Confidence            8899999999999998876    89999852  2111             112211  1  2369999999999999999


Q ss_pred             EEecCCCCcceeeEEEEE
Q psy15738        167 VANNMVGSSAAASIALHV  184 (187)
Q Consensus       167 ~~~n~~g~~~s~~~~l~v  184 (187)
                      .+.|..+..-.....|.|
T Consensus       225 ~~~n~~~~~fg~gt~l~v  242 (253)
T 3uzq_A          225 QRSNEVPWTFGGGTKLEI  242 (253)
T ss_dssp             EECSSSSCCBCCCEEEEE
T ss_pred             EEccCCCcEECCCEEEEE
Confidence            999865443333445555

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=4.9e-15  Score=89.98  Aligned_cols=89  Identities=26%  Similarity=0.559  Sum_probs=71.6

Q ss_pred             cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EE-E-e---CcEEEEecCCCCCCeEEEEEE
Q psy15738         95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YS-Y-S---GNSLTVRHTNRHSAGIYLCVA  168 (187)
Q Consensus        95 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~-~-~---~~~l~i~~~~~~d~g~y~C~~  168 (187)
                      .+|.+.  ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.... .. . .   ...|.|.++..+|.|.|.|.|
T Consensus         8 ~~P~i~--~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm3_A            8 FRPHFL--QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIA   85 (110)
T ss_dssp             CCCEEE--ECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEE
T ss_pred             CCCcEE--eCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEE
Confidence            456664  33556788999999999999999999999999998775442 21 1 1   237999999999999999999


Q ss_pred             ecCCCCcceeeEEEEEEe
Q psy15738        169 NNMVGSSAAASIALHVLC  186 (187)
Q Consensus       169 ~n~~g~~~s~~~~l~v~~  186 (187)
                      .|..|.. +..+.|.|..
T Consensus        86 ~n~~g~~-~~~~~l~V~~  102 (110)
T 2dm3_A           86 TNRAGQN-SFSLELVVAA  102 (110)
T ss_dssp             ECSSCEE-EECCEEEEEC
T ss_pred             ECCCCEE-EEEEEEEEeC
Confidence            9999987 6888888864

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.56  E-value=4e-13  Score=93.34  Aligned_cols=136  Identities=10%  Similarity=0.113  Sum_probs=86.6

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEEeeccc--------------eeeEEEEEEEEcCCee-------------E
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKKKKRKK--------------RKKKKKKKEKRIPPRI-------------I  100 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~~--------------~~~~~~~l~v~~~p~~-------------~  100 (187)
                      .++.+.... .....+.|..++.+|+|.|+|.....              .......|.|..++..             .
T Consensus        72 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~  151 (256)
T 3juy_B           72 DRVTFTADTSANTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIV  151 (256)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCC
T ss_pred             ceEEEEEecCCCEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeE
Confidence            355554322 12233458889999999999954432              2344567888764221             1


Q ss_pred             EecCCceEEEecCCcEEEEeEeccCCC-CcEEEEeC--CeeCC-------------CCcEEE----eCcEEEEecCCCCC
Q psy15738        101 YVSGAGKVEVKKGYSVTLECKADGNPV-PNITWTRK--NNNLP-------------GGEYSY----SGNSLTVRHTNRHS  160 (187)
Q Consensus       101 ~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~~~W~~~--~~~~~-------------~~~~~~----~~~~l~i~~~~~~d  160 (187)
                      ....+....+.+|+.+.|.|.+.+.|. +.+.|++.  +....             ..+...    ....|.|.++..+|
T Consensus       152 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  231 (256)
T 3juy_B          152 LTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPED  231 (256)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhH
Confidence            123345677889999999999998876 89999983  22111             122211    12359999999999


Q ss_pred             CeEEEEEEecCCCCcceeeEEEEE
Q psy15738        161 AGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       161 ~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      +|.|.|.+.|..+..-.....|.|
T Consensus       232 sG~Y~C~~~~~~~~~~g~gt~l~V  255 (256)
T 3juy_B          232 FALYYCQVYGASSYTFGQGTKLER  255 (256)
T ss_dssp             CSEEEEEECCSSCCEECCCEEEEE
T ss_pred             CEEEEEEEeeCCCceEcCCEEEEE
Confidence            999999999865443234445544

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.56  E-value=7.6e-15  Score=87.57  Aligned_cols=78  Identities=27%  Similarity=0.482  Sum_probs=64.7

Q ss_pred             ceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc----EEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceee
Q psy15738        106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE----YSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAAS  179 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~----~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~  179 (187)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++++..+....    ...  ....|.|.++...|+|.|.|.|.|..|.. +..
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~-~~~   94 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHT   94 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EEE
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEE-EEE
Confidence            35678899999999999999999999999998775432    111  23589999999999999999999999987 578


Q ss_pred             EEEEE
Q psy15738        180 IALHV  184 (187)
Q Consensus       180 ~~l~v  184 (187)
                      +.|.|
T Consensus        95 ~~l~V   99 (100)
T 3caf_A           95 YHLDV   99 (100)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77776

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.56  E-value=3.7e-14  Score=95.71  Aligned_cols=111  Identities=16%  Similarity=0.187  Sum_probs=76.3

Q ss_pred             ceeEEEEEecccceeEEeeccce-eeEEEEEEEEc----CCeeEEecCCceEEEecCCcEEEEeEeccC-CCC-cEEEEe
Q psy15738         62 LSYILAMEKEEEERKKKKKRKKR-KKKKKKKEKRI----PPRIIYVSGAGKVEVKKGYSVTLECKADGN-PVP-NITWTR  134 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~~-~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~~~W~~  134 (187)
                      ...|.+++.+|.|.|+|...... ......|.|..    +|.+......  ..+..|+.+.|.|.+.|. |.| .+.|++
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~--~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  156 (210)
T 3d9a_H           79 YLDLNSVTTEDTATYYCANWDGDYWGQGTLVTVSAAKTTPPSVYPLAPG--SAAQTNSMVTLGCLVKGYFPEPVTVTWNS  156 (210)
T ss_dssp             EEEECSCCGGGCEEEEEEETTSSCBCCCEEEEECCCCCBCCEEEEECCT--TSCCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             EEEECCCCcccCEEEEEEEecCcccccceEEEeccCCCCCCEEEEecCC--cccccCCcEEEEEEEeeEecCCcEEEEee
Confidence            45588999999999999655431 22345677753    3444322211  234679999999999987 877 999999


Q ss_pred             CCeeCCC---C-----cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        135 KNNNLPG---G-----EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       135 ~~~~~~~---~-----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ++..+..   .     ......+.|.|.++..+| |.|.|.|.|..|..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  204 (210)
T 3d9a_H          157 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST  204 (210)
T ss_dssp             GTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTE
T ss_pred             CCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence            9875321   0     111123568888888866 99999999998765

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.56  E-value=7.6e-14  Score=98.15  Aligned_cols=110  Identities=20%  Similarity=0.227  Sum_probs=73.1

Q ss_pred             ceeEEEEEecccceeEEeeccce---eeEEEEEEEEcCCe-------------eEEecCCceEEEecCCcEEEEeEeccC
Q psy15738         62 LSYILAMEKEEEERKKKKKRKKR---KKKKKKKEKRIPPR-------------IIYVSGAGKVEVKKGYSVTLECKADGN  125 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~~---~~~~~~l~v~~~p~-------------~~~~~~~~~~~~~~g~~~~l~C~~~g~  125 (187)
                      ...|..++.+|.|.|+|......   ......|.|..+|.             +... .+....+.+|+.+.|.|.+.+.
T Consensus        83 ~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~-~p~~~~v~~G~~v~L~C~~~g~  161 (276)
T 3auv_A           83 TLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLV-ESGGGLVQPGGSLRLSCAASGF  161 (276)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEE-EECCEEECTTCCEEEEEEEESS
T ss_pred             EEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEE-CCCceEecCCCeEEEEEEecCc
Confidence            34478899999999999554321   23345677765432             2111 1234678889999999999987


Q ss_pred             C--CCcEEEEeCC--eeC------------------CCCcEEEe------CcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        126 P--VPNITWTRKN--NNL------------------PGGEYSYS------GNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       126 p--~p~~~W~~~~--~~~------------------~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      |  .+.+.|++++  ...                  ...++...      ...|.|.++..+|+|.|.|.|.|..
T Consensus       162 ~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~  236 (276)
T 3auv_A          162 TISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFF  236 (276)
T ss_dssp             CGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             cCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCc
Confidence            6  4789999963  111                  11222221      1279999999999999999999973

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.56  E-value=1.3e-14  Score=89.10  Aligned_cols=91  Identities=32%  Similarity=0.630  Sum_probs=67.8

Q ss_pred             EcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc------E-EEeCcEEEEe-----cCCCCCC
Q psy15738         94 RIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE------Y-SYSGNSLTVR-----HTNRHSA  161 (187)
Q Consensus        94 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~------~-~~~~~~l~i~-----~~~~~d~  161 (187)
                      ..+|.+.  ..+....+..|+.+.|.|.+.|.|.|.+.|++++..+....      . ....+.+.+.     ++..+|.
T Consensus         7 ~~pP~i~--~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~   84 (117)
T 2v9t_A            7 DFPPRIV--EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDE   84 (117)
T ss_dssp             CEEEEEE--ECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSC
T ss_pred             cCCCeeE--cCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcC
Confidence            3456654  23445678899999999999999999999999998775431      1 1223444443     4578999


Q ss_pred             eEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        162 GIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       162 g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      |.|.|.|.|..|...+..+.|.+.+
T Consensus        85 G~Y~C~a~N~~G~~~s~~~~l~~~~  109 (117)
T 2v9t_A           85 GVYVCVARNYLGEAVSHDASLEVAA  109 (117)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEC-
T ss_pred             EEEEEEEEeCccceEeeeEEEEhhh
Confidence            9999999999999877788887754

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.55  E-value=4.6e-14  Score=81.43  Aligned_cols=75  Identities=21%  Similarity=0.334  Sum_probs=59.0

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-EE--e--CcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-SY--S--GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA  181 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~--~--~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~  181 (187)
                      ...+.+|+.+.|.|.+.+ |.|.+.|+++|..+..... ..  .  ...|.|.++..+|+|.|.|.|.|    . +..+.
T Consensus         5 ~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~-~~~a~   78 (84)
T 2lu7_A            5 RVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----D-SRIFL   78 (84)
T ss_dssp             CEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----T-CEEEE
T ss_pred             EEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----E-EEEEE
Confidence            467889999999999866 8899999999998865532 22  1  24799999999999999998754    4 46777


Q ss_pred             EEEEeC
Q psy15738        182 LHVLCK  187 (187)
Q Consensus       182 l~v~~~  187 (187)
                      |.|..|
T Consensus        79 l~V~eP   84 (84)
T 2lu7_A           79 VSVEEP   84 (84)
T ss_dssp             EEECCC
T ss_pred             EEEECC
Confidence            777543

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.55  E-value=3.9e-14  Score=95.66  Aligned_cols=112  Identities=16%  Similarity=0.162  Sum_probs=77.4

Q ss_pred             ceeEEEEEecccceeEEeeccc---eeeEEEEEEE---EcCCeeEEecCCceEEEecCCcEEEEeEeccCCC--CcEEEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK---RKKKKKKKEK---RIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPV--PNITWT  133 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~---~~~~~~~l~v---~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~~~W~  133 (187)
                      ...|..++.+|+|.|+|.+...   .......|.|   ..+|.+.....  ......|+.+.|.|.+.|.++  +.+.|+
T Consensus        72 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~--~~~~~~~~~v~l~C~~~g~~p~~~~v~W~  149 (213)
T 3r06_A           72 SFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPP--SSEQLGTGSATLVCFVNNFYPKDINVKWK  149 (213)
T ss_dssp             EEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECC--CHHHHTTTEEEEEEEEEEEBSSCEEEEEE
T ss_pred             EEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCC--CceecCCCCcEEEEEEeeecCCceEEEEE
Confidence            4447889999999999965432   3445567777   45565543222  122345778999999988754  379999


Q ss_pred             eCCeeCCCCc-EE-----------EeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        134 RKNNNLPGGE-YS-----------YSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       134 ~~~~~~~~~~-~~-----------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ++|..+.... ..           .....|.+......|.|.|+|.|.|.....
T Consensus       150 k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~  203 (213)
T 3r06_A          150 VDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA  203 (213)
T ss_dssp             ETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             ECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence            9998776542 11           112357788888888999999999986543

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.55  E-value=1.1e-14  Score=99.73  Aligned_cols=112  Identities=13%  Similarity=0.121  Sum_probs=75.8

Q ss_pred             ceeEEEEEecccceeEEeeccc-----eeeEEEEEEEE----cCCeeEEecCCceEEEecCCcEEEEeEeccCCCC--cE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK-----RKKKKKKKEKR----IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP--NI  130 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~-----~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~~  130 (187)
                      ...|..++.+|.|.|+|.....     .......|.|.    .+|.+......  .....|+.+.|.|.+.|.+++  .+
T Consensus        92 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~--~~~~~g~~v~L~C~~~g~~p~~~~v  169 (234)
T 2j6e_L           92 SLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPS--SEELQANKATLVCLISDFFPGAVTV  169 (234)
T ss_dssp             EEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCC--HHHHTTSCCCEEECCCBCSSCCCEE
T ss_pred             EEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCC--hhHhcCCceEEEEEEEEEcCCceEE
Confidence            4458889999999999954422     12234566663    34444322111  112358899999999986443  89


Q ss_pred             EEEeCCeeCCCCcEE-----------EeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        131 TWTRKNNNLPGGEYS-----------YSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       131 ~W~~~~~~~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      .|+++|..+......           ...+.|.|.++..+|.|.|+|.|.|..+..
T Consensus       170 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  225 (234)
T 2j6e_L          170 AWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV  225 (234)
T ss_dssp             EEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCC
T ss_pred             EEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCce
Confidence            999999887544221           012468888888999999999999987765

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.54  E-value=5.4e-14  Score=96.38  Aligned_cols=112  Identities=16%  Similarity=0.194  Sum_probs=76.8

Q ss_pred             ceeEEEEEecccceeEEeeccc---eeeEEEEEEEE---cCCeeEEecCCceEEEecCCcEEEEeEeccC-C-CCcEEEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK---RKKKKKKKEKR---IPPRIIYVSGAGKVEVKKGYSVTLECKADGN-P-VPNITWT  133 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~---~~~~~~~l~v~---~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~p~~~W~  133 (187)
                      ...|.+++.+|.|.|+|.....   .......|.|.   .+|.+.....  ......|+.+.|.|.+.|. | .+.+.|+
T Consensus        95 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~--~~~~~~g~~v~l~C~~~~~~p~~~~v~W~  172 (237)
T 3sob_L           95 TLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPP--SDEQLKSGTASVVCLLNNFYPREAKVQWK  172 (237)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECC--CHHHHHHTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCC--ChhhccCCceEEEEEEcccCCCceEEEEE
Confidence            3447889999999999955432   23344567764   3444432221  1123358889999999884 4 4799999


Q ss_pred             eCCeeCCCCc-E-----------EEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        134 RKNNNLPGGE-Y-----------SYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       134 ~~~~~~~~~~-~-----------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +++..+.... .           ......|.+.....+|.|.|.|.|.|.....
T Consensus       173 k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  226 (237)
T 3sob_L          173 VDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  226 (237)
T ss_dssp             ETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             ECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCC
Confidence            9998876532 1           1113468888888899999999999987654

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.54  E-value=3.8e-14  Score=95.71  Aligned_cols=111  Identities=14%  Similarity=0.107  Sum_probs=75.6

Q ss_pred             ceeEEEEEecccceeEEeeccce---eeEEEEEEEE----cCCeeEEecCCceEEEecCCcEEEEeEeccCCCC--cEEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKKR---KKKKKKKEKR----IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP--NITW  132 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~~---~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~~~W  132 (187)
                      .+.|..++.+|.|.|+|.+....   ......|.|.    .+|.+......  .....|+.+.|.|.+.|.+++  .+.|
T Consensus        74 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~--~~~~~g~~v~L~C~~~g~~p~~~~v~W  151 (212)
T 1q0x_L           74 ALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPS--SEELSTAKATLVCTITDFYPGVVTVDW  151 (212)
T ss_dssp             EEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCC--HHHHTTTEEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCC--HHHccCCcEEEEEEEEEEeCCCeEEEE
Confidence            34477889999999999554322   2344567774    45555432221  123468899999999986443  7999


Q ss_pred             EeCCeeCCCCcEE-----------EeCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        133 TRKNNNLPGGEYS-----------YSGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       133 ~~~~~~~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      +++|..+......           .....|.|..+..+|.|.|.|.|.|....
T Consensus       152 ~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (212)
T 1q0x_L          152 KVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS  204 (212)
T ss_dssp             EETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred             EECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence            9999877544221           11236888888889999999999997654

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.54  E-value=1.7e-14  Score=101.78  Aligned_cols=123  Identities=17%  Similarity=0.084  Sum_probs=90.0

Q ss_pred             ceeEEEEEecccceeEEeec--cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCC--CcEEEEeC-C
Q psy15738         62 LSYILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPV--PNITWTRK-N  136 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~~~W~~~-~  136 (187)
                      ...|..++.+|.|.|+|.+.  ....+..+.|.|..+|... ...+....+.+|+.+.|.|.+.+ |.  +.+.|+++ +
T Consensus        52 ~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~-~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~  129 (292)
T 4dkd_C           52 ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPW-NVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRG  129 (292)
T ss_dssp             EEEESSCCGGGCSCEEECCCC----CCEEECCEECCSSCCE-EESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGG
T ss_pred             EEEEcccccccCEEEEEEEccCCCCcceEEEEEEcCccccc-cccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCC
Confidence            44477889999999999544  3445778888888877643 22344677889999999999988 54  68999997 4


Q ss_pred             eeCCCCc-EE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        137 NNLPGGE-YS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       137 ~~~~~~~-~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      ..+.... .. .....|.|.++...|.|.|.|.+.|..+...+..+.|.|..
T Consensus       130 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  181 (292)
T 4dkd_C          130 RPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQK  181 (292)
T ss_dssp             CCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEEC
T ss_pred             CccccCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeC
Confidence            4443332 22 12456999999999999999999998776655677777753

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.54  E-value=1.5e-14  Score=101.28  Aligned_cols=124  Identities=15%  Similarity=0.135  Sum_probs=80.3

Q ss_pred             cEEEeeccccccceeEEEEEecccceeEEeec------cceeeEEEEEEEEc------CCeeEEecCCceEEEecCCcEE
Q psy15738         50 SYIILATSLLHYLSYILAMEKEEEERKKKKKR------KKRKKKKKKKEKRI------PPRIIYVSGAGKVEVKKGYSVT  117 (187)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~------~~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~  117 (187)
                      ++.+...........|.+++.+|.|.|.|...      .........|.|..      +|.+.... +....+..|+.+.
T Consensus        90 r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~-~~~~~~~~g~~v~  168 (270)
T 3qib_D           90 RFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFE-PSEAEISHTQKAT  168 (270)
T ss_dssp             HEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEE-CCHHHHHHHSEEE
T ss_pred             cEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEEC-CCccccccCCceE
Confidence            55444322223445588999999999999554      22333455777765      45443222 1112234589999


Q ss_pred             EEeEecc-CCCC-cEEEEeCCeeCCCCcEE----------------EeCcEEEEecCCCCC-CeEEEEEEecCCCC
Q psy15738        118 LECKADG-NPVP-NITWTRKNNNLPGGEYS----------------YSGNSLTVRHTNRHS-AGIYLCVANNMVGS  174 (187)
Q Consensus       118 l~C~~~g-~p~p-~~~W~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~d-~g~y~C~~~n~~g~  174 (187)
                      |.|.+.| .|.| .+.|+++|..+......                .....|.+.....+| .|.|+|.+.|....
T Consensus       169 L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~  244 (270)
T 3qib_D          169 LVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  244 (270)
T ss_dssp             EEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBC
T ss_pred             EEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCC
Confidence            9999998 5656 79999999877543211                112456777777667 99999999987543

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.54  E-value=2.5e-13  Score=94.28  Aligned_cols=110  Identities=20%  Similarity=0.234  Sum_probs=72.4

Q ss_pred             ceeEEEEEecccceeEEeeccc-----eeeEEEEEEEEcCCee-------------------EEecCCceEEEecCCcEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK-----RKKKKKKKEKRIPPRI-------------------IYVSGAGKVEVKKGYSVT  117 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~-----~~~~~~~l~v~~~p~~-------------------~~~~~~~~~~~~~g~~~~  117 (187)
                      ...|..++.+|+|.|+|.....     .......|.|..++..                   .... +....+.+|+.+.
T Consensus        75 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~  153 (256)
T 3ux9_B           75 SLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVE-SGGGLVQPGGSLR  153 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEE-ECCEEECTTCCEE
T ss_pred             EEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEc-CCCeEEcCCCeEE
Confidence            4458889999999999954421     3334567888765421                   1111 2234578899999


Q ss_pred             EEeEeccCC--CCcEEEEeCC--eeC-------C-----------CCcEEEe------CcEEEEecCCCCCCeEEEEEEe
Q psy15738        118 LECKADGNP--VPNITWTRKN--NNL-------P-----------GGEYSYS------GNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus       118 l~C~~~g~p--~p~~~W~~~~--~~~-------~-----------~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      |.|.+.+.+  .+.+.|+++.  ..+       .           ..+....      ...|.|.++..+|+|.|.|.+.
T Consensus       154 L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~  233 (256)
T 3ux9_B          154 LSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARY  233 (256)
T ss_dssp             EEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEE
Confidence            999998876  6789999863  211       0           0122111      1259999999999999999999


Q ss_pred             cCC
Q psy15738        170 NMV  172 (187)
Q Consensus       170 n~~  172 (187)
                      |..
T Consensus       234 ~~~  236 (256)
T 3ux9_B          234 IDF  236 (256)
T ss_dssp             ETT
T ss_pred             cCC
Confidence            963

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=6e-14  Score=83.72  Aligned_cols=79  Identities=14%  Similarity=0.278  Sum_probs=63.0

Q ss_pred             cCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE-eC---cEEEEecCCCCCCeEEEEEEecCCCCcce
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY-SG---NSLTVRHTNRHSAGIYLCVANNMVGSSAA  177 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~-~~---~~l~i~~~~~~d~g~y~C~~~n~~g~~~s  177 (187)
                      ..+....+.+|+.+.|.|.+  .|.|.+.|+++|..+.... +.. ..   ..|.|.++..+|+|.|.|.|.|.  .. +
T Consensus        12 ~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~-~   86 (100)
T 2yuz_A           12 TPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY--NV-T   86 (100)
T ss_dssp             BCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS--CC-C
T ss_pred             ccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC--Ce-e
Confidence            44556788999999999999  7889999999999886543 222 12   37999999999999999999998  33 5


Q ss_pred             eeEEEEEEe
Q psy15738        178 ASIALHVLC  186 (187)
Q Consensus       178 ~~~~l~v~~  186 (187)
                      .++.|.|..
T Consensus        87 ~~a~L~V~~   95 (100)
T 2yuz_A           87 LPAKVHVIS   95 (100)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEeC
Confidence            677787764

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.54  E-value=6.6e-14  Score=97.10  Aligned_cols=112  Identities=16%  Similarity=0.134  Sum_probs=76.3

Q ss_pred             ceeEEEEEecccceeEEeeccce---eeEEEEEEEEc---CCeeEEecCCceEEEecCCcEEEEeEeccCCC--CcEEEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKKR---KKKKKKKEKRI---PPRIIYVSGAGKVEVKKGYSVTLECKADGNPV--PNITWT  133 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~~---~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~~~W~  133 (187)
                      ...|.+++.+|.|.|+|.+....   ......|.|..   +|.+......  .....|+.+.|.|.+.|.++  +.+.|+
T Consensus       114 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~v~l~C~~~g~~p~~~~v~W~  191 (254)
T 2c1o_A          114 TLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPS--SEQLTSGGASVVCFLNNFYPKDINVKWK  191 (254)
T ss_dssp             EEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCC--HHHHHTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCC--hhhccCCcEEEEEEEecccCCCcEEEEE
Confidence            34477899999999999654332   22334666653   4555432221  11235789999999988543  359999


Q ss_pred             eCCeeCCCC-cEE-----------EeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        134 RKNNNLPGG-EYS-----------YSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       134 ~~~~~~~~~-~~~-----------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ++|..+... ...           ...+.|.|.++..+|.|.|.|.|.|.....
T Consensus       192 k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          192 IDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             ESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             ECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            999877554 111           123579999999999999999999987643

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.53  E-value=9.7e-14  Score=81.98  Aligned_cols=78  Identities=23%  Similarity=0.401  Sum_probs=65.0

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      +....+.+|+.+.|.|.+.+  .|.+.|++++..+... +.......|.|.++..+|+|.|.|.|.|..|.. +..+.|.
T Consensus         8 p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~   84 (95)
T 4hwu_A            8 PEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTAARTVDSE-TWIFMVN   84 (95)
T ss_dssp             CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEE
T ss_pred             CCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEeCCEEEECcCCcccCEEEEEEEccCCCcE-EEEEEEE
Confidence            44567889999999999987  5799999999887544 344567899999999999999999999999977 5788877


Q ss_pred             EE
Q psy15738        184 VL  185 (187)
Q Consensus       184 v~  185 (187)
                      |.
T Consensus        85 V~   86 (95)
T 4hwu_A           85 VT   86 (95)
T ss_dssp             EC
T ss_pred             Ee
Confidence            74

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.53  E-value=1.2e-13  Score=83.67  Aligned_cols=90  Identities=24%  Similarity=0.368  Sum_probs=69.0

Q ss_pred             EcCCeeEEecCCceEEEecCCcEEEEeEeccCC--CCcEEEEeCCeeCCCCcEE----E---------eCcEEEEecCCC
Q psy15738         94 RIPPRIIYVSGAGKVEVKKGYSVTLECKADGNP--VPNITWTRKNNNLPGGEYS----Y---------SGNSLTVRHTNR  158 (187)
Q Consensus        94 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~~~~~~~~~~----~---------~~~~l~i~~~~~  158 (187)
                      ..+|.+.  ..+....+.+|+.+.|.|.+.+.|  .+.+.|++++..+......    .         ....|.|.++..
T Consensus         8 ~~~P~i~--~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   85 (112)
T 3so5_A            8 FPXPQIT--VQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEF   85 (112)
T ss_dssp             CCSCEEE--ECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCG
T ss_pred             CCCCeEE--eCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecccc
Confidence            3456554  334456788999999999998654  5789999999887654311    0         136899999999


Q ss_pred             CCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        159 HSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       159 ~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      .|.|.|.|.|.|..|...+..+.|.|+
T Consensus        86 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~  112 (112)
T 3so5_A           86 TSEGXYQCVISNHFGSSYSVXAXLTIN  112 (112)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             ccCCeEEEEEEeCCCcEEEeEEEEEeC
Confidence            999999999999999854678888773

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.53  E-value=4.6e-14  Score=87.16  Aligned_cols=84  Identities=19%  Similarity=0.222  Sum_probs=65.1

Q ss_pred             ecCCceEEEecCCcEEEEeEeccC---CCCcEEEEeCCeeC----CCCcEEE----------eCcEEEEecCCCCCCeEE
Q psy15738        102 VSGAGKVEVKKGYSVTLECKADGN---PVPNITWTRKNNNL----PGGEYSY----------SGNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       102 ~~~~~~~~~~~g~~~~l~C~~~g~---p~p~~~W~~~~~~~----~~~~~~~----------~~~~l~i~~~~~~d~g~y  164 (187)
                      ...+....+.+|+.+.|.|.+.|.   |.|.|.|+|+....    .......          ....|.|.++...|+|.|
T Consensus        11 ~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y   90 (126)
T 2dav_A           11 IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNY   90 (126)
T ss_dssp             CSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEE
T ss_pred             EEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEE
Confidence            344566789999999999999774   88999999974110    0111111          136799999999999999


Q ss_pred             EEEEecCCCCcceeeEEEEEEe
Q psy15738        165 LCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       165 ~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .|.+.|..|.. +..+.|.|..
T Consensus        91 ~Cevsn~~g~~-~~~~~L~V~~  111 (126)
T 2dav_A           91 RCEVTYKDKFD-SCSFDLEVHE  111 (126)
T ss_dssp             EEEEECSSCEE-EECCEEEEEC
T ss_pred             EEEEEeCCCcE-EEEEEEEEEe
Confidence            99999998877 6899999876

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.53  E-value=1.4e-13  Score=93.59  Aligned_cols=124  Identities=15%  Similarity=0.171  Sum_probs=82.2

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEEeeccc-------eeeEEEEEEEEc----CCeeEEecCCceEEEecCCcE
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKKKKRKK-------RKKKKKKKEKRI----PPRIIYVSGAGKVEVKKGYSV  116 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~~-------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~  116 (187)
                      .++.+.... .....+.|..++.+|.|.|.|.....       .......|.|..    +|.+......  ..+..|+.+
T Consensus        68 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~--~~~~~g~~v  145 (222)
T 1q9r_B           68 GRFTISRDNSQSILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPG--SAAQTNSMV  145 (222)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCC--SCCCCSSEE
T ss_pred             CceEEEEECCCCeEEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEcccc--ccccCCCcE
Confidence            455554322 12234558899999999999955432       222445777764    3444322211  124579999


Q ss_pred             EEEeEeccC-CCC-cEEEEeCCeeCCCCc--------EEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        117 TLECKADGN-PVP-NITWTRKNNNLPGGE--------YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       117 ~l~C~~~g~-p~p-~~~W~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      .|.|.+.|. |.| .+.|++++..+....        .....+.|.|.++...| |.|.|.|.|..|..
T Consensus       146 ~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~  213 (222)
T 1q9r_B          146 TLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST  213 (222)
T ss_dssp             EEEEEEEEEBSSCCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred             EEEEEEccEECCCCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCC
Confidence            999999986 888 999999987653211        11122468899998889 99999999998865

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.52  E-value=5.3e-14  Score=104.75  Aligned_cols=112  Identities=15%  Similarity=0.203  Sum_probs=79.0

Q ss_pred             ceeEEEEEecccceeEEeeccce---eeEEEEEEEEc---CCeeEEecCCceEEEecCCcEEEEeEecc-CCCC-cEEEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKKR---KKKKKKKEKRI---PPRIIYVSGAGKVEVKKGYSVTLECKADG-NPVP-NITWT  133 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~~---~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p-~~~W~  133 (187)
                      .+.|..++.+|.|.|+|.+....   ......|.|..   +|.+......  ....+|+.+.|.|.+.| .|.| .+.|+
T Consensus        76 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~~~l~C~~~g~~p~~~~v~W~  153 (438)
T 1qgc_4           76 TLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPS--SEQLTSGGASVVCFLNNFYPKDINVKWK  153 (438)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCC--HHHHHTTEEEEEEEEEEEBSSCEEEEEE
T ss_pred             EEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCC--hhhccCCceEEEEEEccccCCCcEEEEE
Confidence            34478889999999999655332   24456677753   5555422221  12235789999999987 5667 89999


Q ss_pred             eCCeeCCCCc-EE-----------EeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        134 RKNNNLPGGE-YS-----------YSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       134 ~~~~~~~~~~-~~-----------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ++|..+.... ..           ...+.|.|.++..+|.|.|.|.|.|..+..
T Consensus       154 k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  207 (438)
T 1qgc_4          154 IDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  207 (438)
T ss_dssp             ETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             ECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC
Confidence            9998776541 10           113479999999999999999999988764

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.52  E-value=2.3e-14  Score=83.99  Aligned_cols=71  Identities=20%  Similarity=0.441  Sum_probs=54.4

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-EE--eC--cEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-SY--SG--NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~--~~--~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      ..+.+|+.+.|.|.+.+ |.|.+.|+++|..+..... ..  .+  ..|.|.++..+|+|.|.|.|.|.     +..+.|
T Consensus        16 v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~-----~~~~~l   89 (91)
T 2lvc_A           16 VHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE-----CAYFTV   89 (91)
T ss_dssp             EECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC-----EEEEEE
T ss_pred             EEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce-----EEEEEE
Confidence            44568999999999865 8889999999998865432 21  22  36999999999999999998663     455566


Q ss_pred             EE
Q psy15738        183 HV  184 (187)
Q Consensus       183 ~v  184 (187)
                      .|
T Consensus        90 tV   91 (91)
T 2lvc_A           90 TI   91 (91)
T ss_dssp             EC
T ss_pred             EC
Confidence            54

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.52  E-value=1.2e-12  Score=97.91  Aligned_cols=117  Identities=11%  Similarity=0.181  Sum_probs=80.7

Q ss_pred             eeEEEEEecccceeEEeeccc----------eeeEEEEEEEEcC----CeeEEecCCceEEEecCCcEEEEeEeccC-C-
Q psy15738         63 SYILAMEKEEEERKKKKKRKK----------RKKKKKKKEKRIP----PRIIYVSGAGKVEVKKGYSVTLECKADGN-P-  126 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~----------~~~~~~~l~v~~~----p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p-  126 (187)
                      ..|..+...|.|.|+|.+...          ..+....|.|...    |.+.   .  ...+.+|+.+.|.|.+.|. | 
T Consensus       144 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~---~--~~~v~~G~~v~l~C~~~g~~P~  218 (450)
T 1z7z_I          144 TTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLV---S--PRVLEVDTQGTVVCSLDGLFPV  218 (450)
T ss_dssp             EEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEE---C--CSEEETTSEEEEEEEEESCTTG
T ss_pred             EEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEec---C--ceeEEeCCcEEEEEEeeCCCCC
Confidence            336677778899999954422          1123455666533    2221   1  1467899999999999998 6 


Q ss_pred             -CCcEEEEeCCeeCCCCcEEEeCcEEEEe---cCCCCCCe--EEEEEEecCCCCcceeeEEEEEEe
Q psy15738        127 -VPNITWTRKNNNLPGGEYSYSGNSLTVR---HTNRHSAG--IYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       127 -~p~~~W~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~g--~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                       .+.+.|++++..+... .......+.+.   ++..+|.|  .|.|.+.|..|.. +..+.|.|..
T Consensus       219 ~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~-~~~~~l~V~~  282 (450)
T 1z7z_I          219 SEAQVHLALGDQRLNPT-VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ-ETLQTVTIYS  282 (450)
T ss_dssp             GGCEEEEEETTEECCCE-EEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             CceEEEEeCCCEeCCce-EEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccE-EEEEEEEEec
Confidence             6789999999887662 32233333222   77899999  9999999998877 4677777754

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.52  E-value=4.9e-16  Score=96.28  Aligned_cols=96  Identities=27%  Similarity=0.399  Sum_probs=75.9

Q ss_pred             eEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCc-EEEEeCCeeCCC---CcEEE----e----CcEEEE
Q psy15738         86 KKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPN-ITWTRKNNNLPG---GEYSY----S----GNSLTV  153 (187)
Q Consensus        86 ~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~~~---~~~~~----~----~~~l~i  153 (187)
                      +..+.|.|..+|.+..   +....+.+|+.+.|.|.+.|.|.|. +.|++++..+..   .++..    .    ...|.|
T Consensus         4 ~~~~~l~V~~~P~i~~---~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I   80 (122)
T 2cry_A            4 GSSGTLTVNGPPIISS---TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTI   80 (122)
T ss_dssp             SCCCCCCCCSSCCEEE---ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEEC
T ss_pred             ceEEEEEEecCCCccC---CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEE
Confidence            3556788889998864   3345678999999999999999987 999999987754   22222    1    237999


Q ss_pred             ecCCCCCC-eEEEEEEecCCCCcceeeEEEEEE
Q psy15738        154 RHTNRHSA-GIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       154 ~~~~~~d~-g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      .++..+|. |.|.|.|.|..|.. +..+.|.|.
T Consensus        81 ~~v~~~D~~G~Y~C~a~N~~G~~-~~~~~l~V~  112 (122)
T 2cry_A           81 SNIVRADFQTIYNCTAWNSFGSD-TEIIRLKEQ  112 (122)
T ss_dssp             TTCCHHHHHSCEEEEEECSSCEE-EEEECCCCS
T ss_pred             cCCChhhCCceEEEEEECCCCeE-EEEEEEEEC
Confidence            99999998 99999999999988 577776653

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.52  E-value=6.7e-14  Score=95.07  Aligned_cols=116  Identities=14%  Similarity=0.145  Sum_probs=78.4

Q ss_pred             ceeEEEEEecccceeEEeeccc-----eeeEEEEEEEEc----CCeeEEecCCceEEEecCCcEEEEeEeccC-CCC-cE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK-----RKKKKKKKEKRI----PPRIIYVSGAGKVEVKKGYSVTLECKADGN-PVP-NI  130 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~~  130 (187)
                      .+.|.+++.+|.|.|+|.....     .......|.|..    +|.+......  ..+.+|+.+.|.|.+.|. |.| .+
T Consensus        82 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~--~~~~~g~~v~L~C~~~g~~P~p~~v  159 (220)
T 1pz5_B           82 YLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPG--CSDTSGSSVTLGCLVKGYFPEPVTV  159 (220)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCC--SCCSCSSSEEEEEEEEEEBSSCCEE
T ss_pred             EEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccc--cccCCCCcEEEEEEEEEEeCCCeEE
Confidence            4558899999999999955432     122456777763    4444322211  234679999999999987 888 99


Q ss_pred             EEEeCCeeC----CCC----cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738        131 TWTRKNNNL----PGG----EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA  181 (187)
Q Consensus       131 ~W~~~~~~~----~~~----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~  181 (187)
                      .|++++...    ...    ......+.|.|.++...| |.|.|.|.|..|.. ...+.
T Consensus       160 ~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~-~~~~~  216 (220)
T 1pz5_B          160 KWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKV-DLIKE  216 (220)
T ss_dssp             EEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTE-EEEEE
T ss_pred             EEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccE-eeeec
Confidence            999988631    111    111234678888888766 99999999999865 34443

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=2.6e-14  Score=84.62  Aligned_cols=75  Identities=24%  Similarity=0.488  Sum_probs=61.9

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCc-ceeeEEEEEE
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS-AAASIALHVL  185 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~s~~~~l~v~  185 (187)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++..+...    ....|.|.++...|+|.|.|.+.|..+.. .+..+.|.|.
T Consensus        19 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~~v~V~   94 (96)
T 2ens_A           19 GGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP----PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISII   94 (96)
T ss_dssp             TSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSC----CCSEEEEESCCTTTCEEEECEECCSSCCCEECCCEEEEEC
T ss_pred             CCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCC----CCCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEEEEEEe
Confidence            346789999999999999999999999999877544    34789999999999999999999975543 3566666664

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=5.1e-14  Score=83.88  Aligned_cols=77  Identities=22%  Similarity=0.459  Sum_probs=63.6

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      ...+.+|+.+.|.|.+.|.| |.+.|++++..+... +.......|.|.++...|.|.|.|.|.|..|.. +..+.|.|.
T Consensus        12 ~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~   89 (99)
T 2cr3_A           12 SFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSD-TTYFSVNVS   89 (99)
T ss_dssp             ECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEECSSEEEETTCCTTTCEEEEEEEEETTEEE-EEEEEECBC
T ss_pred             CeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEECCEEEEccCCHHHCEEEEEEEEeCCceE-EEEEEEEEe
Confidence            34577899999999999976 799999999877543 334456799999999999999999999999877 577777664

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.51  E-value=7.5e-14  Score=101.09  Aligned_cols=124  Identities=10%  Similarity=0.112  Sum_probs=81.2

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEEeeccc--eeeEEEEEEEEc----CCeeEEecCCceEEEecCCcEEEEeE
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKKKKRKK--RKKKKKKKEKRI----PPRIIYVSGAGKVEVKKGYSVTLECK  121 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~  121 (187)
                      .++.+.... .....+.|..++.+|.|.|+|.+...  .......|.|..    +|.+.....  ...+.+|+.+.|.|.
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~--~~~~~~g~~v~L~C~  143 (344)
T 1za6_B           66 GKATLTADTSASTAYVELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAP--SSKSTSGGTAALGCL  143 (344)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECC--SCTTTSSSEEEEEEE
T ss_pred             CcEEEEEecCCCEEEEEECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccc--cccccCCCcEEEEEE
Confidence            455554322 12234558899999999999965542  233456788873    344432221  123468999999999


Q ss_pred             eccC-CC-CcEEEEeCCeeCCC---------CcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        122 ADGN-PV-PNITWTRKNNNLPG---------GEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       122 ~~g~-p~-p~~~W~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +.|. |. +.+.|++++..+..         .......+.|.|.++..+| |.|.|.|.|..+..
T Consensus       144 ~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~  207 (344)
T 1za6_B          144 VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  207 (344)
T ss_dssp             EEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTE
T ss_pred             EeeEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence            9987 54 69999999875321         1111123478898888778 99999999988753

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.50  E-value=1.2e-12  Score=89.69  Aligned_cols=125  Identities=9%  Similarity=0.112  Sum_probs=77.9

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEEeec--cc------eeeEEEEEEEEc----CCeeEEecCCceEEEecC-C
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKKKKR--KK------RKKKKKKKEKRI----PPRIIYVSGAGKVEVKKG-Y  114 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~--~~------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g-~  114 (187)
                      .++.+.... .....+.|.+++.+|+|.|.|...  ..      .......|.|..    +|.+.... +. ..+..| +
T Consensus        65 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-p~-~~~~~g~~  142 (232)
T 1dn0_B           65 SRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLV-SC-ENSPSDTS  142 (232)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEE-CC-------CC
T ss_pred             CeEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEec-cc-cccCCCCC
Confidence            455554321 122345588999999999999554  21      223456888865    24333222 11 123467 8


Q ss_pred             cEEEEeEeccC-CCC-cEEEEe-CCeeCCCC---------cEEEeCcEEEEecCCC--CCCeEEEEEEecCCCCc
Q psy15738        115 SVTLECKADGN-PVP-NITWTR-KNNNLPGG---------EYSYSGNSLTVRHTNR--HSAGIYLCVANNMVGSS  175 (187)
Q Consensus       115 ~~~l~C~~~g~-p~p-~~~W~~-~~~~~~~~---------~~~~~~~~l~i~~~~~--~d~g~y~C~~~n~~g~~  175 (187)
                      .+.|.|.+.|. |.| .+.|++ +|..+...         ......+.|.|.....  .|.|.|.|.+.|..+..
T Consensus       143 ~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~  217 (232)
T 1dn0_B          143 SVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNK  217 (232)
T ss_dssp             SEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCE
T ss_pred             cEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCc
Confidence            99999999886 766 899999 88765430         1111235678887776  78999999999998865

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.50  E-value=5.2e-13  Score=92.92  Aligned_cols=110  Identities=13%  Similarity=0.112  Sum_probs=74.9

Q ss_pred             ceeEEEEEecccceeEEeeccc-----eeeEEEEEEEEcCC---------------eeEEecCCceEEEecCCcEEEEeE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK-----RKKKKKKKEKRIPP---------------RIIYVSGAGKVEVKKGYSVTLECK  121 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~-----~~~~~~~l~v~~~p---------------~~~~~~~~~~~~~~~g~~~~l~C~  121 (187)
                      .+.|..++.+|+|.|+|.....     .......|.|..++               .......+....+.+|+++.|.|.
T Consensus        80 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~  159 (259)
T 3omz_A           80 RMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCL  159 (259)
T ss_dssp             EEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCE
T ss_pred             EEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEE
Confidence            3458889999999999955422     34455677777532               112234455677899999999999


Q ss_pred             eccC-CCCcEEEEeCCeeCC---------------CCcEEEe------CcEEEEecCCCCCCeEEEEEEecC
Q psy15738        122 ADGN-PVPNITWTRKNNNLP---------------GGEYSYS------GNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       122 ~~g~-p~p~~~W~~~~~~~~---------------~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      +.+. |.+.+.|++......               ..+....      ...|.|.++..+|+|.|.|.+.+.
T Consensus       160 ~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          160 YETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             EECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             CCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence            8875 778999998542100               1112111      245999999999999999999853

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.50  E-value=7.5e-13  Score=91.43  Aligned_cols=109  Identities=17%  Similarity=0.243  Sum_probs=73.0

Q ss_pred             ceeEEEEEecccceeEEeeccc---eeeEEEEEEEEcCC------------eeEEecCCceEEEecCCcEEEEeEeccCC
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK---RKKKKKKKEKRIPP------------RIIYVSGAGKVEVKKGYSVTLECKADGNP  126 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~---~~~~~~~l~v~~~p------------~~~~~~~~~~~~~~~g~~~~l~C~~~g~p  126 (187)
                      .+.|..++.+|+|.|+|.....   .......|.|..++            .......+ ...+.+|+.+.|.|.+.+.+
T Consensus        77 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~G~~v~L~C~~~~~~  155 (247)
T 1svz_A           77 TLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSG-PELKKPGETVKISCKATNYA  155 (247)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECC-CEEECTTCCEEEEEEEESSC
T ss_pred             EEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCC-ceeecCCCcEEEEEEEcCcc
Confidence            3457889999999999955432   12344678887643            22222222 34588899999999998875


Q ss_pred             --CCcEEEEeCC--eeC------C------------CCcEEEe------CcEEEEecCCCCCCeEEEEEEecC
Q psy15738        127 --VPNITWTRKN--NNL------P------------GGEYSYS------GNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       127 --~p~~~W~~~~--~~~------~------------~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                        .+.+.|++++  ..+      .            ..+....      ...|.|.++..+|+|.|.|.+.|.
T Consensus       156 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          156 FTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             GGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             cCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence              4689999963  110      0            1222221      147999999999999999999985

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.50  E-value=4.9e-13  Score=90.93  Aligned_cols=125  Identities=12%  Similarity=0.088  Sum_probs=81.7

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEEeeccc-----eeeEEEEEEEEc----CCeeEEecCCceEEEecCCcEEE
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKKKKRKK-----RKKKKKKKEKRI----PPRIIYVSGAGKVEVKKGYSVTL  118 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~~-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l  118 (187)
                      .++.+.... .....+.|..++.+|+|.|.|.....     .......|.|..    +|.+.... .  ..+..|+.+.|
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~--~~~~~g~~v~L  142 (220)
T 2fbj_H           66 DKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-L--PPALSSDPVII  142 (220)
T ss_dssp             TTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-C--CSSSCCSSEEE
T ss_pred             CcEEEEeeCCCCEEEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-c--ccccCCCcEEE
Confidence            455544321 12234558899999999999944322     122345788864    34443222 1  22467999999


Q ss_pred             EeEeccC-CC--CcEEEEeCCeeCC---CC------cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcc
Q psy15738        119 ECKADGN-PV--PNITWTRKNNNLP---GG------EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSA  176 (187)
Q Consensus       119 ~C~~~g~-p~--p~~~W~~~~~~~~---~~------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  176 (187)
                      .|.+.+. |.  +.+.|++++..+.   ..      ......+.|.|......|.|.|.|.|.|..+..+
T Consensus       143 ~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          143 GCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             EEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             EEEEEeEECCCcEEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            9999887 65  6899999986541   00      0011123588888888899999999999998774

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.49  E-value=6e-13  Score=92.03  Aligned_cols=109  Identities=17%  Similarity=0.264  Sum_probs=72.0

Q ss_pred             ceeEEEEEecccceeEEeeccc---eeeEEEEEEEEcCC-----------------eeEEecCCceEEEecCCcEEEEeE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK---RKKKKKKKEKRIPP-----------------RIIYVSGAGKVEVKKGYSVTLECK  121 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~---~~~~~~~l~v~~~p-----------------~~~~~~~~~~~~~~~g~~~~l~C~  121 (187)
                      ...|..+..+|+|.|+|.+...   .......|.|..++                 .......+....+.+|+.+.|.|.
T Consensus        75 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~  154 (250)
T 3esu_F           75 SLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCK  154 (250)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEE
T ss_pred             EEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEE
Confidence            3447889999999999955432   22344567776531                 011112233466889999999999


Q ss_pred             eccCC--CCcEEEEeC--CeeCC------------------CCcEEEe------CcEEEEecCCCCCCeEEEEEEec
Q psy15738        122 ADGNP--VPNITWTRK--NNNLP------------------GGEYSYS------GNSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus       122 ~~g~p--~p~~~W~~~--~~~~~------------------~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      +.+.|  .+.+.|+++  +..+.                  ..+....      ...|.|.++..+|+|.|.|.+.+
T Consensus       155 ~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          155 DSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             CCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            98877  778999997  33220                  0122111      12699999999999999999997

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.49  E-value=3.7e-13  Score=79.18  Aligned_cols=82  Identities=20%  Similarity=0.186  Sum_probs=61.9

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEE--eC--cEEEEecCCCCCCeEEEEEEec
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSY--SG--NSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~--~~--~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      ++.+  ...+....+.+|+.+.|.|.+.+ ++|.+.|+++|..+... ++..  ..  ..|.|.++..+|+|.|.|.|.|
T Consensus         5 ~~~~--~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T 1waa_A            5 LIEV--EKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN   81 (93)
T ss_dssp             CCCE--EECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             CcEe--eccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence            4444  33445678899999999999976 55789999999988654 3322  12  3799999999999999999988


Q ss_pred             CCCCcceeeEEEEEE
Q psy15738        171 MVGSSAAASIALHVL  185 (187)
Q Consensus       171 ~~g~~~s~~~~l~v~  185 (187)
                      .     ..++.|.|.
T Consensus        82 ~-----~~sa~L~V~   91 (93)
T 1waa_A           82 T-----KSAANLKVK   91 (93)
T ss_dssp             E-----EEEEEEEEE
T ss_pred             C-----cEEEEEEEE
Confidence            4     356667765

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.49  E-value=6.6e-13  Score=91.57  Aligned_cols=109  Identities=18%  Similarity=0.157  Sum_probs=72.0

Q ss_pred             ceeEEEEEecccceeEEeeccc---eeeEEEEEEEEcCCe------------eEEecCCceEEEecCCcEEEEeEeccCC
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK---RKKKKKKKEKRIPPR------------IIYVSGAGKVEVKKGYSVTLECKADGNP  126 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~---~~~~~~~l~v~~~p~------------~~~~~~~~~~~~~~g~~~~l~C~~~g~p  126 (187)
                      .+.|..++.+|+|.|+|.+...   .......|.|..+|.            ..... +....+.+|+.+.|.|.+.+.|
T Consensus        72 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~g~~  150 (242)
T 2znx_A           72 TLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQE-SGPSLVKPSQTLSLTCSVTGDS  150 (242)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEE-ECCSEECTTSCEEEEEEEESSC
T ss_pred             EEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeec-CCcceecCCCeEEEEEEEEccc
Confidence            3447889999999999955433   123456788876553            11111 1123578899999999999876


Q ss_pred             --CCcEEEEeCC--eeC-----------------CCCcEEEe------CcEEEEecCCCCCCeEEEEEEecC
Q psy15738        127 --VPNITWTRKN--NNL-----------------PGGEYSYS------GNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       127 --~p~~~W~~~~--~~~-----------------~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                        .+.+.|+++.  ..+                 ...+....      ...|.|.++..+|+|.|.|.|.|.
T Consensus       151 ~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          151 ITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             GGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             cCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence              4789999853  211                 01222211      137999999999999999999984

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.49  E-value=2.7e-14  Score=102.49  Aligned_cols=108  Identities=15%  Similarity=0.202  Sum_probs=73.5

Q ss_pred             EEEEEecccceeEEeeccceeeEEEEEEEE------cCCeeEEecCCceEEEecCCcEEEEeEeccC-CCC-cEEEEeCC
Q psy15738         65 ILAMEKEEEERKKKKKRKKRKKKKKKKEKR------IPPRIIYVSGAGKVEVKKGYSVTLECKADGN-PVP-NITWTRKN  136 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~~~W~~~~  136 (187)
                      |..+..+|.|.|+|.+..........+.|.      .+|.+.....+.  ....|+.+.|.|.+.|. |++ .+.|+++|
T Consensus       182 I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~--~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g  259 (323)
T 2wqr_A          182 VGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPE--WPGSRDKRTLACLIQNFMPEDISVQWLHNE  259 (323)
T ss_dssp             CCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCC--CTTCTTEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             ECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCCh--HHhcCCcEEEEEEeeeeeCCCcEEEEEECC
Confidence            667778899999996554332233344442      456554333221  11239999999999985 433 79999999


Q ss_pred             eeCCCCcEE------------EeCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        137 NNLPGGEYS------------YSGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       137 ~~~~~~~~~------------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      ..+....+.            ...+.|.|..+..+|.|.|.|.|.|....
T Consensus       260 ~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          260 VQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             EECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             EECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            987654221            11246889998889999999999998776

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.9e-14  Score=87.08  Aligned_cols=85  Identities=16%  Similarity=0.282  Sum_probs=65.5

Q ss_pred             ecCCceEEEecCCcEEEEeEeccC---CCCcEEEEeCCe-eCCC---CcEEE----------eCcEEEEecCCCCCCeEE
Q psy15738        102 VSGAGKVEVKKGYSVTLECKADGN---PVPNITWTRKNN-NLPG---GEYSY----------SGNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       102 ~~~~~~~~~~~g~~~~l~C~~~g~---p~p~~~W~~~~~-~~~~---~~~~~----------~~~~l~i~~~~~~d~g~y  164 (187)
                      ...+....+.+|+.+.|.|.+.|.   |.|.|.|+|+.- .+..   .....          ....|.|.++...|+|.|
T Consensus        16 ~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   95 (118)
T 2edn_A           16 LKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYY   95 (118)
T ss_dssp             SBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCE
T ss_pred             EECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEE
Confidence            344566789999999999999875   789999999741 1111   11111          136799999999999999


Q ss_pred             EEEEecCCCCcceeeEEEEEEeC
Q psy15738        165 LCVANNMVGSSAAASIALHVLCK  187 (187)
Q Consensus       165 ~C~~~n~~g~~~s~~~~l~v~~~  187 (187)
                      .|.+.|..|.. +..+.|.|..+
T Consensus        96 ~Cevsn~~g~~-s~~~~L~V~~~  117 (118)
T 2edn_A           96 RLEVKAKDTCD-SCGFNIDVEAP  117 (118)
T ss_dssp             EEEEECSSCEE-EEEECCEEECC
T ss_pred             EEEEEEcCCcE-EEEEEEEEEcC
Confidence            99999999976 78999988753

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.49  E-value=9.6e-13  Score=91.32  Aligned_cols=120  Identities=14%  Similarity=0.182  Sum_probs=75.7

Q ss_pred             cEEEeeccccccceeEEEEEecccceeEEeeccc--------eeeEEEEEEEE------cCCeeEEecCCceEEEecCCc
Q psy15738         50 SYIILATSLLHYLSYILAMEKEEEERKKKKKRKK--------RKKKKKKKEKR------IPPRIIYVSGAGKVEVKKGYS  115 (187)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~~--------~~~~~~~l~v~------~~p~~~~~~~~~~~~~~~g~~  115 (187)
                      ++.+.......  +.|.+++.+|+|.|.|.....        .......|.|.      .+|.+..... ....+..|+.
T Consensus        65 R~~~~~~~~~~--L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~-~~~~~~~g~~  141 (253)
T 3to4_D           65 DYLATRVTDTE--LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEP-SEAEISHTQK  141 (253)
T ss_dssp             EEEEECCSSSC--CEEEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEEC-CHHHHHHHSE
T ss_pred             cEEEEeCCCCe--EEEccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCC-ChhhcccCCc
Confidence            55554433322  559999999999999955321        22334466665      3444432211 1112224689


Q ss_pred             EEEEeEecc-CCCC-cEEEEeCCeeCCCCcEE----------------EeCcEEEEecCCCCC-CeEEEEEEecCC
Q psy15738        116 VTLECKADG-NPVP-NITWTRKNNNLPGGEYS----------------YSGNSLTVRHTNRHS-AGIYLCVANNMV  172 (187)
Q Consensus       116 ~~l~C~~~g-~p~p-~~~W~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~d-~g~y~C~~~n~~  172 (187)
                      +.|.|.+.| .|++ .+.|+++|..+......                ...+.|.+......| .|.|+|.+.+..
T Consensus       142 ~~L~C~~~g~~P~~i~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          142 ATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             EEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             eEEEEEEceEECCcEEEEEEECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            999999998 5656 79999999876543211                112467777776666 779999999874

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.48  E-value=3.4e-13  Score=90.89  Aligned_cols=109  Identities=13%  Similarity=0.167  Sum_probs=69.6

Q ss_pred             EEEEEecccceeEEeecccee----eEEEEE--EEEcCCeeEEecCCceEEEecCCcEEEEeEeccC-CC-CcEEEEeCC
Q psy15738         65 ILAMEKEEEERKKKKKRKKRK----KKKKKK--EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGN-PV-PNITWTRKN  136 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~~~----~~~~~l--~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-p~~~W~~~~  136 (187)
                      |..++.+|.|.|+|.+.....    ...+.+  .+..+|.+........  ...|+.+.|.|.+.|. |+ +.+.|+++|
T Consensus        72 I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~--~~~g~~~~L~C~~~g~~P~~~~v~W~k~g  149 (207)
T 2vol_A           72 IMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKE--QMAKDKVSLTCMITDFFPEDITVEWESNG  149 (207)
T ss_dssp             CCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTG--GGSSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             EehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHH--HhcCCceEEEEEEeeEECCCCEEEEEECC
Confidence            567777899999995543322    223333  4456777653333221  2358999999999985 44 389999999


Q ss_pred             eeCCCCcE---E-EeC------cEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        137 NNLPGGEY---S-YSG------NSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       137 ~~~~~~~~---~-~~~------~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ..+.....   . ...      +.|.+......|.|.|.|.|.|.....
T Consensus       150 ~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~~  198 (207)
T 2vol_A          150 QPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLHN  198 (207)
T ss_dssp             EECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSGG
T ss_pred             EeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCCC
Confidence            87643211   1 111      235555555567999999999986543

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.48  E-value=5.1e-14  Score=95.70  Aligned_cols=109  Identities=16%  Similarity=0.192  Sum_probs=67.5

Q ss_pred             EEEEEecccceeEEeecccee----eEEEEE--EEEcCCeeEEecCCceEEEecCCcEEEEeEecc-CCCC-cEEEEeCC
Q psy15738         65 ILAMEKEEEERKKKKKRKKRK----KKKKKK--EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADG-NPVP-NITWTRKN  136 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~~~----~~~~~l--~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p-~~~W~~~~  136 (187)
                      |..++.+|.|.|+|.+.....    ...+.+  .+..+|.+........  ...|+.+.|.|.+.| .|.+ .+.|+++|
T Consensus        80 I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~--~~~g~~~~L~C~~~g~~P~~~~v~W~k~g  157 (218)
T 2rgs_A           80 IQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAE--QLSRKDVSLTCLVVGFNPGDISVEWTSNG  157 (218)
T ss_dssp             CCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGG--GTTSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             EcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChH--HhcCCceEEEEEEEeeeCCCcEEEEEECC
Confidence            567777899999995443211    222222  4456776653332211  125899999999998 5665 89999999


Q ss_pred             eeCCCCcE---E-EeC------cEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        137 NNLPGGEY---S-YSG------NSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       137 ~~~~~~~~---~-~~~------~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ..+.....   . ...      +.|.+......|.|.|.|.|.|.....
T Consensus       158 ~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~~  206 (218)
T 2rgs_A          158 HTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLKN  206 (218)
T ss_dssp             EEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSGG
T ss_pred             EeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCCC
Confidence            87643211   0 112      234444444456899999999986543

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=7.7e-14  Score=85.40  Aligned_cols=93  Identities=22%  Similarity=0.260  Sum_probs=69.0

Q ss_pred             EEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-EE-----eCcEEEEecCCCCCC
Q psy15738         88 KKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-SY-----SGNSLTVRHTNRHSA  161 (187)
Q Consensus        88 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~-----~~~~l~i~~~~~~d~  161 (187)
                      .+.|.|..+|... ...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ..     ....|.|.++..+|+
T Consensus         4 ~a~l~V~~~p~~~-~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~   82 (115)
T 2cr6_A            4 GSSGLVQGRRVHI-IEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDS   82 (115)
T ss_dssp             CCCCCCCSSCCEE-EECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTC
T ss_pred             cEEEEEcCCCCeE-eccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhC
Confidence            3456676665221 3445677899999999999999999999999999987754421 11     124799999999999


Q ss_pred             eEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        162 GIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       162 g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      |.|.|.    +|.. +..+.|.|..
T Consensus        83 G~Y~C~----~g~~-~~~~~L~V~~  102 (115)
T 2cr6_A           83 GTIYFE----AGDQ-RASAALRVTE  102 (115)
T ss_dssp             EEEEEE----ETTE-ECCEEEEEEC
T ss_pred             EEEEEE----ECCe-eEEEEEEEEC
Confidence            999999    3445 4667777753

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.48  E-value=6.8e-13  Score=83.64  Aligned_cols=80  Identities=21%  Similarity=0.326  Sum_probs=62.7

Q ss_pred             EcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-----------cEEE-------eCcEEEEec
Q psy15738         94 RIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-----------EYSY-------SGNSLTVRH  155 (187)
Q Consensus        94 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-----------~~~~-------~~~~l~i~~  155 (187)
                      ..+|.+.  ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...           +...       ..+.|.|.+
T Consensus        19 ~~pP~~~--~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   96 (137)
T 3qr2_A           19 SHMAGFV--QAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDT   96 (137)
T ss_dssp             --CCEEE--ECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECS
T ss_pred             CCCCeEE--cCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECC
Confidence            4677774  3455678889999999999999999999999987655321           1111       236899999


Q ss_pred             CCCCCCeEEEEEEecCCCCc
Q psy15738        156 TNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       156 ~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +..+|+|.|.|.|.|..|..
T Consensus        97 v~~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           97 LVEEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             CCGGGCEEEEEEEECCTTSS
T ss_pred             CCcccCEEEEEEEEecCCcc
Confidence            99999999999999999875

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.48  E-value=1.3e-12  Score=91.26  Aligned_cols=109  Identities=17%  Similarity=0.226  Sum_probs=75.1

Q ss_pred             ceeEEEEEecccceeEEeeccc---eeeEEEEEEEEcCC------------------eeEEecCCceEEEecCCcEEEEe
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK---RKKKKKKKEKRIPP------------------RIIYVSGAGKVEVKKGYSVTLEC  120 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~---~~~~~~~l~v~~~p------------------~~~~~~~~~~~~~~~g~~~~l~C  120 (187)
                      .+.|..++.+|+|.|.|.....   .......|.|..+|                  .+.....+ ...+.+|+.+.|.|
T Consensus        82 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~G~~v~L~C  160 (264)
T 2gjj_A           82 TLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSG-PEVVKTGASVKISC  160 (264)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECC-CEEECTTCCEEEEE
T ss_pred             EEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCC-CEEEcCCCcEEEEE
Confidence            4458889999999999955432   12344678887653                  22222222 24688899999999


Q ss_pred             EeccCCC--CcEEEEeCC--eeCC------------------CCcEEEe------CcEEEEecCCCCCCeEEEEEEecC
Q psy15738        121 KADGNPV--PNITWTRKN--NNLP------------------GGEYSYS------GNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       121 ~~~g~p~--p~~~W~~~~--~~~~------------------~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      .+.+.+.  +.+.|+++.  ....                  ..+....      ...|.|.++..+|+|.|.|.+.|.
T Consensus       161 ~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          161 KASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             EEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            9998874  789999863  1110                  1222211      247999999999999999999995

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.47  E-value=4.4e-13  Score=82.78  Aligned_cols=78  Identities=19%  Similarity=0.308  Sum_probs=61.0

Q ss_pred             EEEecCCcEEEEeEeccC--CCCcEEEEeCCeeCC------CC-cEE------EeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        108 VEVKKGYSVTLECKADGN--PVPNITWTRKNNNLP------GG-EYS------YSGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~--p~p~~~W~~~~~~~~------~~-~~~------~~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      ..+.+|+.+.|.|.+.|.  |.+.+.|++++..+.      .. ...      ...+.|.|.++..+|+|.|.|.|.|..
T Consensus        18 v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~   97 (122)
T 3s35_X           18 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL   97 (122)
T ss_dssp             EEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSS
T ss_pred             EEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCC
Confidence            467899999999999984  456899999887432      11 111      134579999999999999999999999


Q ss_pred             CCcceeeEEEEEEe
Q psy15738        173 GSSAAASIALHVLC  186 (187)
Q Consensus       173 g~~~s~~~~l~v~~  186 (187)
                      |.. +..+.|.|..
T Consensus        98 g~~-~~~~~l~V~~  110 (122)
T 3s35_X           98 MTK-KNSTFVRVHE  110 (122)
T ss_dssp             CEE-EEEEEEEEEE
T ss_pred             Cce-EEEEEEEEec
Confidence            988 5788888764

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.47  E-value=1.3e-13  Score=98.95  Aligned_cols=103  Identities=13%  Similarity=0.123  Sum_probs=64.8

Q ss_pred             cccceeEEeeccceeeEEEEEEE-----EcCCeeEEecCCceEEEecCCcEEEEeEeccC-CCC---cEEEEeCC-eeCC
Q psy15738         71 EEEERKKKKKRKKRKKKKKKKEK-----RIPPRIIYVSGAGKVEVKKGYSVTLECKADGN-PVP---NITWTRKN-NNLP  140 (187)
Q Consensus        71 ~d~g~y~c~~~~~~~~~~~~l~v-----~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p---~~~W~~~~-~~~~  140 (187)
                      .|.|.|+|.+..........+.+     ..+|.+. ...+....+.+|+.+.|.|.+.|. |.|   .+.|++++ ..+.
T Consensus        82 ~d~g~Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~-~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~  160 (323)
T 2wqr_A           82 LSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAY-LSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVN  160 (323)
T ss_dssp             HTTCCEEEEEEETTEEEEEEECCCCCSSGGGCEEE-ECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCC
T ss_pred             CCCCcEEEEEEeCCCCcceeeecCCCCCCCCCEEE-EcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccc
Confidence            38899999665433332222221     1123222 222323346679999999999886 456   89999975 4332


Q ss_pred             CCcE---------EEeCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        141 GGEY---------SYSGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       141 ~~~~---------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      ....         ....+.|.|.++..+|.|.|.|.|.|..+.
T Consensus       161 ~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~  203 (323)
T 2wqr_A          161 HSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLP  203 (323)
T ss_dssp             CCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred             cccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCC
Confidence            2111         112347999999999999999999998643

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.47  E-value=4.2e-13  Score=91.75  Aligned_cols=124  Identities=17%  Similarity=0.170  Sum_probs=78.3

Q ss_pred             ccEEEeeccc-cccceeEEEEEecccceeEEeeccc-----------eeeEEEEEEEEc----CCeeEEecCCceEEEec
Q psy15738         49 CSYIILATSL-LHYLSYILAMEKEEEERKKKKKRKK-----------RKKKKKKKEKRI----PPRIIYVSGAGKVEVKK  112 (187)
Q Consensus        49 ~~~~~~~~~~-~~~~~~~~~v~~~d~g~y~c~~~~~-----------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~  112 (187)
                      .++.+..... ....+.|.+++.+|+|.|.|.....           .......|.|..    +|.+.... + ...+..
T Consensus        67 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~-~-~~~~~~  144 (228)
T 3bae_H           67 SRLTISKDTSRDMVFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLA-P-VCGDTT  144 (228)
T ss_dssp             GGEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEEC-C------C
T ss_pred             CcEEEEEcCCCCeEEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEec-c-cccccC
Confidence            4555543221 2234558899999999999944322           112346788873    44443222 1 123567


Q ss_pred             CCcEEEEeEeccC-CCC-cEEEEeCCeeCCCC--------cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        113 GYSVTLECKADGN-PVP-NITWTRKNNNLPGG--------EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       113 g~~~~l~C~~~g~-p~p-~~~W~~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      |+.+.|.|.+.|. |.| .+.|++++..+...        ......+.|.|.++..++ |.|.|.|.|..+..
T Consensus       145 g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~  216 (228)
T 3bae_H          145 GSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASST  216 (228)
T ss_dssp             CSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred             CCCEEEEEEEccEeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCC
Confidence            9999999999986 777 89999988653211        011123568888888756 99999999988765

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.47  E-value=8.5e-13  Score=79.05  Aligned_cols=78  Identities=19%  Similarity=0.313  Sum_probs=61.3

Q ss_pred             cCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc---EEEe----CcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---YSYS----GNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~---~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ..+....+.+|+.+.|.|.+.+ |.+.+.|++++..+....   +...    ...|.|.++..+|+|.|.|.|.|    .
T Consensus        12 ~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~   86 (103)
T 1x44_A           12 KQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----G   86 (103)
T ss_dssp             BCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----E
T ss_pred             ccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC----C
Confidence            3445577889999999999987 778999999998875442   2221    15799999999999999999988    3


Q ss_pred             ceeeEEEEEEe
Q psy15738        176 AAASIALHVLC  186 (187)
Q Consensus       176 ~s~~~~l~v~~  186 (187)
                       +..+.|.|..
T Consensus        87 -~~~~~l~V~~   96 (103)
T 1x44_A           87 -QSSAKLSVDL   96 (103)
T ss_dssp             -EEEEEEEEEC
T ss_pred             -cEEEEEEEeC
Confidence             4677777764

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.47  E-value=6.4e-13  Score=80.09  Aligned_cols=81  Identities=21%  Similarity=0.351  Sum_probs=63.8

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe-eC--------CCCcEEE-----eCcEEEEecCCCCCCeEEEEEEec
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN-NL--------PGGEYSY-----SGNSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~-~~--------~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++. .+        ...+...     ....|.|.++..+|+|.|.|.+.|
T Consensus        13 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n   92 (108)
T 3m45_A           13 TQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFT   92 (108)
T ss_dssp             CCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeEEEEEEEc
Confidence            445788999999999999999999999998764 11        1223322     245799999999999999999999


Q ss_pred             CCCCcceeeEEEEEEeC
Q psy15738        171 MVGSSAAASIALHVLCK  187 (187)
Q Consensus       171 ~~g~~~s~~~~l~v~~~  187 (187)
                       .+.. +..+.|.|..+
T Consensus        93 -~~~~-~~~~~L~V~~~  107 (108)
T 3m45_A           93 -MPVK-TSKAYLTVLGV  107 (108)
T ss_dssp             -SSCE-EEEEEEEEECC
T ss_pred             -CCCc-EEEEEEEEEcC
Confidence             7766 68888888753

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.47  E-value=2.9e-12  Score=87.29  Aligned_cols=125  Identities=10%  Similarity=0.122  Sum_probs=81.7

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEEeeccc--------eeeEEEEEEEEc----CCeeEEecCCceEEEecCCc
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKKKKRKK--------RKKKKKKKEKRI----PPRIIYVSGAGKVEVKKGYS  115 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~~--------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~  115 (187)
                      .++.+.... .....+.|..++.+|+|.|.|.....        .......|.|..    +|.+......  ..+..|+.
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~--~~~~~g~~  143 (223)
T 1dee_B           66 GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSC--ENSNPSST  143 (223)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECT--TCCCSSSE
T ss_pred             CeEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCC--cccCCCCc
Confidence            455554322 12234558899999999999955432        122345788873    3444322211  12357899


Q ss_pred             EEEEeEeccC-CCC-cEEEEe-CCeeCCCC---------cEEEeCcEEEEecCCC--CCCeEEEEEEecCCCCc
Q psy15738        116 VTLECKADGN-PVP-NITWTR-KNNNLPGG---------EYSYSGNSLTVRHTNR--HSAGIYLCVANNMVGSS  175 (187)
Q Consensus       116 ~~l~C~~~g~-p~p-~~~W~~-~~~~~~~~---------~~~~~~~~l~i~~~~~--~d~g~y~C~~~n~~g~~  175 (187)
                      +.|.|.+.|. |.| .+.|++ +|..+...         ......+.|.|.....  .|.|.|.|.|.|..+..
T Consensus       144 v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~  217 (223)
T 1dee_B          144 VAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNK  217 (223)
T ss_dssp             EEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCE
T ss_pred             EEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCC
Confidence            9999999987 766 899999 88776430         1111234678877765  78899999999998866

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.47  E-value=3.6e-13  Score=93.35  Aligned_cols=112  Identities=17%  Similarity=0.166  Sum_probs=75.6

Q ss_pred             ceeEEEEEecccceeEEeeccce---eeEEEEEEEEc---CCeeEEecCCceEEEecCCcEEEEeEeccC-CCC-cEEEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKKR---KKKKKKKEKRI---PPRIIYVSGAGKVEVKKGYSVTLECKADGN-PVP-NITWT  133 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~~---~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~~~W~  133 (187)
                      ...|.+++.+|.|.|+|......   ......|.|..   +|.+......  .....|+.+.|.|.+.|. |++ .+.|+
T Consensus       110 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~v~L~C~~~g~~p~~~~v~W~  187 (252)
T 3bkj_L          110 TLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPS--SEQLTSGGASVVCFLNNFYPKDINVKWK  187 (252)
T ss_dssp             EEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCC--HHHHHHTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCC--hhhcCCCcEEEEEEEeeEeCCCcEEEEE
Confidence            34477889999999999554331   22335677754   4544422221  112368899999999885 443 69999


Q ss_pred             eCCeeCCCC-cEE-----------EeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        134 RKNNNLPGG-EYS-----------YSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       134 ~~~~~~~~~-~~~-----------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ++|..+... ...           .....|.|.++..+|.|.|.|.|.|.....
T Consensus       188 k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          188 IDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             ETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             ECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            999876544 111           112358899999899999999999976543

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.45  E-value=7.6e-14  Score=104.29  Aligned_cols=66  Identities=17%  Similarity=0.217  Sum_probs=52.3

Q ss_pred             EecCCcEEEEeEeccCC----CCcEEEEeCCeeCCCCc----EE------EeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        110 VKKGYSVTLECKADGNP----VPNITWTRKNNNLPGGE----YS------YSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~p----~p~~~W~~~~~~~~~~~----~~------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +..|+.+.|.|.+.|.|    .+.+.|++++..+....    ..      ...+.|.|.++...|.|.|.|.|.|..+..
T Consensus       252 ~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~  331 (444)
T 1igt_B          252 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA  331 (444)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSS
T ss_pred             eecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCC
Confidence            46799999999999884    35899999998764321    11      123479999999999999999999998866

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.45  E-value=2.3e-12  Score=91.31  Aligned_cols=111  Identities=12%  Similarity=0.214  Sum_probs=75.3

Q ss_pred             ceeEEEEEecccceeEEeeccce-------eeEEEEEEEEcC-----------C---eeEEecCCceEEEecCCcEEEEe
Q psy15738         62 LSYILAMEKEEEERKKKKKRKKR-------KKKKKKKEKRIP-----------P---RIIYVSGAGKVEVKKGYSVTLEC  120 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~~-------~~~~~~l~v~~~-----------p---~~~~~~~~~~~~~~~g~~~~l~C  120 (187)
                      ...|..++.+|+|.|+|......       ......|.|..+           +   .......+....+.+|+++.|.|
T Consensus       102 sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C  181 (291)
T 2gki_A          102 YMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSC  181 (291)
T ss_dssp             EEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEE
T ss_pred             EEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEE
Confidence            45578899999999999554321       123457777651           1   11113334466789999999999


Q ss_pred             EeccCCCC------cEEEEeCC--eeCC-------------CCcEEE--e--CcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        121 KADGNPVP------NITWTRKN--NNLP-------------GGEYSY--S--GNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       121 ~~~g~p~p------~~~W~~~~--~~~~-------------~~~~~~--~--~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      .+.+.|.+      .+.|+++.  ....             ..+...  .  ...|.|.++..+|+|.|.|.+.|..
T Consensus       182 ~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          182 KSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             EESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             EcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            99988765      89999963  2110             122221  1  2479999999999999999999853

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.44  E-value=2.2e-12  Score=87.65  Aligned_cols=124  Identities=14%  Similarity=0.210  Sum_probs=80.6

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEEeeccc----eeeEEEEEEEE----cCCeeEEecCCceEEEecCCcEEEE
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKKKKRKK----RKKKKKKKEKR----IPPRIIYVSGAGKVEVKKGYSVTLE  119 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~~----~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~  119 (187)
                      .++.+.... .....+.|..++.+|+|.|.|.....    .......|.|.    .+|.+.......  . ..|+.+.|.
T Consensus        68 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~--~-~~g~~v~L~  144 (221)
T 3m8o_H           68 GRLTISRDDSKNTAFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCS--T-QPDGNVVIA  144 (221)
T ss_dssp             TSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCS--C-CCTTEEEEE
T ss_pred             ccEEEEecCCCCEEEEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCcc--c-ccCCCEEEE
Confidence            455554432 22233557889999999999954322    23444567775    233332122111  1 578999999


Q ss_pred             eEecc-CCC-C-cEEEEeCCeeCC----------CCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        120 CKADG-NPV-P-NITWTRKNNNLP----------GGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       120 C~~~g-~p~-p-~~~W~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      |.+.+ .|. + .+.|++++..+.          ........+.|.|..+...|.|.|.|.|.+..+..
T Consensus       145 C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          145 CLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             EEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             EEEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            99998 665 3 899999987551          11111223468899999999999999999987654

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.44  E-value=7e-13  Score=80.78  Aligned_cols=93  Identities=24%  Similarity=0.418  Sum_probs=68.6

Q ss_pred             eeEEEEEEEEcCC-eeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEE-eCc---EEEEecCCC
Q psy15738         85 KKKKKKKEKRIPP-RIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSY-SGN---SLTVRHTNR  158 (187)
Q Consensus        85 ~~~~~~l~v~~~p-~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~-~~~---~l~i~~~~~  158 (187)
                      .+..+.|.|..+| .+.  ..+....+.+|+.+.|.|.+.+.  |.+.|++++..+... ++.. ..+   .|.|.++..
T Consensus         7 ~~~~~~l~V~~~pp~~~--~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~   82 (113)
T 2edh_A            7 GRTSAMLTVRALPIKFT--EGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVA   82 (113)
T ss_dssp             CCCCCCCCCCCSCCCEE--ECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCS
T ss_pred             CcEEEEEEEEcCCCccc--ccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCCh
Confidence            3456677777444 553  33445678999999999999764  789999999887644 3322 223   799999999


Q ss_pred             CCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        159 HSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       159 ~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      +|.|.|.|.|    +.. +..+.|.|..
T Consensus        83 ~D~G~Y~C~a----~~~-~~~~~l~V~~  105 (113)
T 2edh_A           83 EDAGEYLCMC----GKE-RTSAMLTVRA  105 (113)
T ss_dssp             TTCEEEEEEE----TTE-EEEEEEEECC
T ss_pred             hhCEEEEEEe----CCC-CEEEEEEEeC
Confidence            9999999999    445 5677777753

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.44  E-value=6.3e-13  Score=93.56  Aligned_cols=125  Identities=16%  Similarity=0.147  Sum_probs=78.2

Q ss_pred             ccEEEeeccccccceeEEEEEecccceeEEeeccc--------eeeEEEEEEEEc------CCeeEEecCCceEEEecCC
Q psy15738         49 CSYIILATSLLHYLSYILAMEKEEEERKKKKKRKK--------RKKKKKKKEKRI------PPRIIYVSGAGKVEVKKGY  114 (187)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~~--------~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~  114 (187)
                      .++.+...........|..++.+|+|.|+|.....        .......|.|..      +|.+.... +....+..|+
T Consensus        88 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~-~~~~~~~~g~  166 (279)
T 2wbj_D           88 DKFLINHASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFE-PSEAEISHTQ  166 (279)
T ss_dssp             SSEEEEECSSSEEEEEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEE-CCHHHHHHHS
T ss_pred             CcEEEEeCCCCEEEEEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEEC-CCcccccCCC
Confidence            45555432222334558889999999999955431        112345677764      44443221 1111233689


Q ss_pred             cEEEEeEeccCCC--CcEEEEeCCeeCCCCcEE----------------EeCcEEEEecCCCCC-CeEEEEEEecCCCC
Q psy15738        115 SVTLECKADGNPV--PNITWTRKNNNLPGGEYS----------------YSGNSLTVRHTNRHS-AGIYLCVANNMVGS  174 (187)
Q Consensus       115 ~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~d-~g~y~C~~~n~~g~  174 (187)
                      .+.|.|.+.|.++  +.+.|++++..+......                ...+.|.|......| .|.|+|.|.|....
T Consensus       167 ~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~  245 (279)
T 2wbj_D          167 KATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  245 (279)
T ss_dssp             CCEEEEEEEEEBSSCEEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred             ceEEEEEEeeEcCCCcEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence            9999999998743  689999999877543221                111346676666654 67899999997654

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.44  E-value=5.6e-13  Score=91.10  Aligned_cols=124  Identities=15%  Similarity=0.134  Sum_probs=76.1

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEEeeccc---eeeEEEEEEEEc----CCeeEEecCCceEEEecCCcEEEEe
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKKKKRKK---RKKKKKKKEKRI----PPRIIYVSGAGKVEVKKGYSVTLEC  120 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~~---~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C  120 (187)
                      .++.+.... .....+.|.+++.+|+|.|.|.....   .......|.|..    +|.+..... . ..+..|+.+.|.|
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~-~-~~~~~g~~v~L~C  143 (227)
T 1mju_H           66 NKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAP-V-CGDTSGSSVTLGC  143 (227)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECC-C-C------CEEEEE
T ss_pred             CcEEEEEeCCCCeEEEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecC-C-ccccCCCcEEEEE
Confidence            455544321 12234558899999999999954432   122345788864    344432221 1 2356799999999


Q ss_pred             EeccC-CCC-cEEEEeCCeeCCC---C-----cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        121 KADGN-PVP-NITWTRKNNNLPG---G-----EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       121 ~~~g~-p~p-~~~W~~~~~~~~~---~-----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      .+.|. |.+ .+.|++++..+..   .     ......+.|.|.++..+| |.|.|.|.|..+..
T Consensus       144 ~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  207 (227)
T 1mju_H          144 LVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST  207 (227)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTE
T ss_pred             EeecEeCCCeEEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCc
Confidence            99986 766 8999999875421   1     111123578888888877 99999999976554

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.43  E-value=6.7e-13  Score=91.30  Aligned_cols=124  Identities=17%  Similarity=0.145  Sum_probs=74.5

Q ss_pred             ccEEEeeccccccceeEEEEEecccceeEEeeccc-------eeeEEEEEEEEc------CCeeEEecCCceEEEecCCc
Q psy15738         49 CSYIILATSLLHYLSYILAMEKEEEERKKKKKRKK-------RKKKKKKKEKRI------PPRIIYVSGAGKVEVKKGYS  115 (187)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~~-------~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~  115 (187)
                      .++.+.........+.|..++.+|+|.|.|.....       .......|.|..      +|.+.... +....+..|+.
T Consensus        60 ~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~-~~~~~~~~g~~  138 (238)
T 1bec_A           60 DGYKASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFE-PSKAEIANKQK  138 (238)
T ss_dssp             TTCEEECCSSSEEEEEESSCCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEEC-CCSTTCSSSCS
T ss_pred             ceEEEEecCCCEEEEEEecCCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEEC-CChHHcccCCc
Confidence            45544432222234457889999999999955432       122345677764      45443222 22223457899


Q ss_pred             EEEEeEeccC-CCC-cEEEEeCCeeCCCCcEE------EeCcE------EEEecCCCCC-CeEEEEEEecCCC
Q psy15738        116 VTLECKADGN-PVP-NITWTRKNNNLPGGEYS------YSGNS------LTVRHTNRHS-AGIYLCVANNMVG  173 (187)
Q Consensus       116 ~~l~C~~~g~-p~p-~~~W~~~~~~~~~~~~~------~~~~~------l~i~~~~~~d-~g~y~C~~~n~~g  173 (187)
                      +.|.|.+.|. |.+ .+.|+++|..+......      ...+.      |.+......| .|.|.|.|.|...
T Consensus       139 ~~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  211 (238)
T 1bec_A          139 ATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL  211 (238)
T ss_dssp             CSEEEEEEEEBSCCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred             eEEEEEEeeEeCCCcEEEEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence            9999999986 654 89999999877544211      12232      2333323333 6789999999753

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.43  E-value=7.7e-13  Score=91.70  Aligned_cols=114  Identities=12%  Similarity=0.179  Sum_probs=59.2

Q ss_pred             EEecccceeEEeeccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCC-----CCcEEEEeCC--eeC-
Q psy15738         68 MEKEEEERKKKKKRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNP-----VPNITWTRKN--NNL-  139 (187)
Q Consensus        68 v~~~d~g~y~c~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p-----~p~~~W~~~~--~~~-  139 (187)
                      ++..|+|.|+|.+.+. ......+.+..++.+.  ..+....+.+|+.+.|.|.+.+.|     .+.+.|++++  ..+ 
T Consensus        11 v~~~dsg~Y~C~a~g~-~~~~~~~~~~~~~~~~--~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~   87 (254)
T 2c1o_A           11 VRPGTSVKLSCKASGY-SFTNYWMNWLRELVMT--QSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPK   87 (254)
T ss_dssp             ----------------------------CCCEE--EECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCE
T ss_pred             ecCCccEEEEEcCchh-hhhhhhhheeeceeEE--eCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCce
Confidence            7888999999977733 2333444444455543  334567889999999999999987     3889999843  211 


Q ss_pred             ---------C---CCcEEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        140 ---------P---GGEYSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       140 ---------~---~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                               .   ..+...    ....|.|.++..+|.|.|.|.+.|..+........|.|
T Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V  148 (254)
T 2c1o_A           88 RLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLEL  148 (254)
T ss_dssp             EEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEE
T ss_pred             EEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEE
Confidence                     0   122221    12379999999999999999999986543222334444

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.43  E-value=1.7e-13  Score=93.96  Aligned_cols=109  Identities=19%  Similarity=0.245  Sum_probs=69.1

Q ss_pred             EEEEEecccceeEEeeccceeeEEEEEEEE------cCCeeEEecCCceEEEecCCcEEEEeEeccC-C-CCcEEEEeCC
Q psy15738         65 ILAMEKEEEERKKKKKRKKRKKKKKKKEKR------IPPRIIYVSGAGKVEVKKGYSVTLECKADGN-P-VPNITWTRKN  136 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~p~~~W~~~~  136 (187)
                      |..++.+|.|.|+|.+........+.+.|.      .+|.+........ . ..+..+.|.|.+.|. | .+.+.|+++|
T Consensus        81 I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~-~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g  158 (231)
T 2w59_A           81 VSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPE-E-LSLSRVTLSCLVRGFRPRDIEIRWLRDH  158 (231)
T ss_dssp             CCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCSCCBCCEEEEECCCGG-G-GGSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             ecchhccCCCEEEEEEEcCCCCCceEEEEecCCCCCcCCEEEEeCCCHH-H-hccCceEEEEEEEeccCCCcEEEEEECC
Confidence            455666789999996554433334455553      3455432222111 1 235679999999986 4 3689999999


Q ss_pred             eeCCCCcE-----EE----------------eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        137 NNLPGGEY-----SY----------------SGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       137 ~~~~~~~~-----~~----------------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ..+.....     ..                ..+.|.+......|.|.|.|.|.|.....
T Consensus       159 ~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~~  218 (231)
T 2w59_A          159 RAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALPM  218 (231)
T ss_dssp             EECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred             EECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence            87754321     11                11346777777778999999999987543

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.42  E-value=1.8e-12  Score=89.87  Aligned_cols=125  Identities=14%  Similarity=0.162  Sum_probs=77.3

Q ss_pred             ccEEEeeccccccceeEEEEEecccceeEEeeccc-----eeeEEEEEEEEc------CCeeEEecCCceEEEecCCcEE
Q psy15738         49 CSYIILATSLLHYLSYILAMEKEEEERKKKKKRKK-----RKKKKKKKEKRI------PPRIIYVSGAGKVEVKKGYSVT  117 (187)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~~-----~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~  117 (187)
                      .++.+...........|..++.+|.|.|.|.....     .......|.|..      +|.+.... +....+..|+.+.
T Consensus        64 ~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~-~~~~~~~~g~~~~  142 (252)
T 1oga_E           64 EGYSVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFE-PSEAEISHTQKAT  142 (252)
T ss_dssp             TTEEECCSSTTBCCEEECSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEEC-CCHHHHHHHSEEE
T ss_pred             CcEEEEecCCCEEEEEECcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEEC-CChhhhccCCceE
Confidence            45555432222334558899999999999954432     112334577753      45443221 2112234689999


Q ss_pred             EEeEeccC-CCC-cEEEEeCCeeCCCCcEE----------------EeCcEEEEecCCCC-CCeEEEEEEecCCCC
Q psy15738        118 LECKADGN-PVP-NITWTRKNNNLPGGEYS----------------YSGNSLTVRHTNRH-SAGIYLCVANNMVGS  174 (187)
Q Consensus       118 l~C~~~g~-p~p-~~~W~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~-d~g~y~C~~~n~~g~  174 (187)
                      |.|.+.|. |.+ .+.|+++|..+......                ...+.|.+...... +.|.|+|.+.|....
T Consensus       143 L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  218 (252)
T 1oga_E          143 LVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  218 (252)
T ss_dssp             EEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             EEEEEeeEcCCCcEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            99999986 644 89999999876543211                01134667665543 578999999997644

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=8.9e-13  Score=78.93  Aligned_cols=83  Identities=24%  Similarity=0.398  Sum_probs=62.9

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEE--e--CcEEEEecCCCCCCeEEEEEEec
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSY--S--GNSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~--~--~~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      ||.+.  ..+....+.+|+.+.|.|.+.+ |.+.+.|++++..+... ++..  .  ...|.|.++..+|+|.|.|.|.|
T Consensus         8 pp~~~--~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (103)
T 2edf_A            8 PAAII--KPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA   84 (103)
T ss_dssp             CCCEE--ECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS
T ss_pred             CcEEE--ecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc
Confidence            44443  3344577889999999999997 78899999999887544 2222  1  23699999999999999999999


Q ss_pred             CCCCcceeeEEEEEEe
Q psy15738        171 MVGSSAAASIALHVLC  186 (187)
Q Consensus       171 ~~g~~~s~~~~l~v~~  186 (187)
                          . +..+.|.|..
T Consensus        85 ----~-~~~~~l~V~~   95 (103)
T 2edf_A           85 ----S-KSTASLHVEE   95 (103)
T ss_dssp             ----C-EEEEEEEECC
T ss_pred             ----C-CcEEEEEEeC
Confidence                2 4677777754

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.42  E-value=3.9e-12  Score=85.54  Aligned_cols=109  Identities=11%  Similarity=0.054  Sum_probs=75.8

Q ss_pred             eeEEEEEecccceeEEe--eccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccC-CC----CcEEEEeC
Q psy15738         63 SYILAMEKEEEERKKKK--KRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGN-PV----PNITWTRK  135 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~--~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~----p~~~W~~~  135 (187)
                      ..|.+|+.+|.|.|.|.  +........+.|+|+.+|....... .  ....|+.. |.|.+.|. |.    +.+.|+++
T Consensus        61 L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~~~P~~~~i~~-~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~  136 (210)
T 1gsm_A           61 LTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSP-A--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVG  136 (210)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCSEEEEES-S--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEET
T ss_pred             EEECccCcccCceEEEEEEeCCCceEEEEEEEEEecCCCcEEcc-c--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEEC
Confidence            34778999999999994  4455566789999999998754332 1  45677888 99999885 64    37999999


Q ss_pred             CeeCCCCcE---EE----------------eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        136 NNNLPGGEY---SY----------------SGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       136 ~~~~~~~~~---~~----------------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +..+.....   ..                ..+.|.+......|.+.|+|.|.+.+...
T Consensus       137 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~  195 (210)
T 1gsm_A          137 GQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGL  195 (210)
T ss_dssp             TEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTE
T ss_pred             CEEcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCC
Confidence            998854321   01                01223333444455689999999876443

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.42  E-value=3.5e-12  Score=89.25  Aligned_cols=110  Identities=19%  Similarity=0.252  Sum_probs=70.4

Q ss_pred             ceeEEEEEecccceeEEeeccc---eeeEEEEEEEEcCCeeE---------------------EecCCceEEEecCCcEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK---RKKKKKKKEKRIPPRII---------------------YVSGAGKVEVKKGYSVT  117 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~---~~~~~~~l~v~~~p~~~---------------------~~~~~~~~~~~~g~~~~  117 (187)
                      .+.|..++.+|+|.|+|.....   .......|.|..++...                     ....+....+.+|+.+.
T Consensus        91 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~  170 (268)
T 1x9q_A           91 TLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMK  170 (268)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEE
T ss_pred             EEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEE
Confidence            4457889999999999955433   12344567776543200                     01112235688899999


Q ss_pred             EEeEeccCCC--CcEEEEeCC--eeC--------------------CCCcEEEe------CcEEEEecCCCCCCeEEEEE
Q psy15738        118 LECKADGNPV--PNITWTRKN--NNL--------------------PGGEYSYS------GNSLTVRHTNRHSAGIYLCV  167 (187)
Q Consensus       118 l~C~~~g~p~--p~~~W~~~~--~~~--------------------~~~~~~~~------~~~l~i~~~~~~d~g~y~C~  167 (187)
                      |.|.+.+.++  +.+.|+++.  ..+                    ...+....      ...|.|.++..+|+|.|.|.
T Consensus       171 L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  250 (268)
T 1x9q_A          171 LSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCT  250 (268)
T ss_dssp             EEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEE
Confidence            9999988764  789999853  111                    11222221      24799999999999999999


Q ss_pred             EecC
Q psy15738        168 ANNM  171 (187)
Q Consensus       168 ~~n~  171 (187)
                      +.+.
T Consensus       251 a~~~  254 (268)
T 1x9q_A          251 GASY  254 (268)
T ss_dssp             EEET
T ss_pred             EccC
Confidence            9974

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.42  E-value=1.8e-12  Score=87.45  Aligned_cols=88  Identities=31%  Similarity=0.566  Sum_probs=70.0

Q ss_pred             cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEE------eCcEEEEecC-CCCCCeEEEEE
Q psy15738         95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSY------SGNSLTVRHT-NRHSAGIYLCV  167 (187)
Q Consensus        95 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~------~~~~l~i~~~-~~~d~g~y~C~  167 (187)
                      .+|.+.  ..+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.......      ....|.|.++ +..|.|.|.|.
T Consensus         5 ~~P~~~--~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~   82 (212)
T 2yd6_A            5 TPPRFT--RTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECV   82 (212)
T ss_dssp             EEEEEE--ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEE
T ss_pred             CCCeEE--eCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEE
Confidence            455554  33445678899999999999999999999999999887665432      1346999999 59999999999


Q ss_pred             EecCCCCcceeeEEEEEE
Q psy15738        168 ANNMVGSSAAASIALHVL  185 (187)
Q Consensus       168 ~~n~~g~~~s~~~~l~v~  185 (187)
                      +.|..|.. +..+.|.|.
T Consensus        83 a~n~~g~~-~~~~~l~V~   99 (212)
T 2yd6_A           83 ASNNVGEI-SVSTRLTVL   99 (212)
T ss_dssp             EEETTEEE-EEEEEEEEE
T ss_pred             EEcCCCcE-EEEEEEEEe
Confidence            99998876 577777775

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.42  E-value=7.8e-13  Score=79.65  Aligned_cols=83  Identities=14%  Similarity=0.298  Sum_probs=61.7

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE-e-C--cEEEEecCCCCCCeEEEEEEec
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY-S-G--NSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~-~-~--~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      +|.+.  ..+....+.+|+.+.|.|.+.+.|.+ +.|++++..+.... ... . .  ..|.|.++..+|.|.|.|.|.|
T Consensus         8 ~p~~~--~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (106)
T 2dlt_A            8 QLEVL--QDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDG   84 (106)
T ss_dssp             CCCEE--ECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEET
T ss_pred             CCEEe--cCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEcc
Confidence            44443  33455788999999999999998877 99999998775432 222 1 2  4799999999999999999999


Q ss_pred             CCCCcceeeEEEEE
Q psy15738        171 MVGSSAAASIALHV  184 (187)
Q Consensus       171 ~~g~~~s~~~~l~v  184 (187)
                      ...   +..+.|.|
T Consensus        85 ~~~---~~~~~l~V   95 (106)
T 2dlt_A           85 YAL---SLSAKLNF   95 (106)
T ss_dssp             SCC---CCCBCEEE
T ss_pred             CCc---eEEEEEEE
Confidence            833   23444544

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.41  E-value=1.9e-12  Score=88.24  Aligned_cols=111  Identities=13%  Similarity=0.172  Sum_probs=74.4

Q ss_pred             ceeEEEEEecccceeEEeeccce----------eeEEEEEEEEc----CCeeEEecCCceEEEecCCcEEEEeEeccC-C
Q psy15738         62 LSYILAMEKEEEERKKKKKRKKR----------KKKKKKKEKRI----PPRIIYVSGAGKVEVKKGYSVTLECKADGN-P  126 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~~----------~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p  126 (187)
                      .+.|..++.+|.|.|.|......          ......|.|..    +|.+.......  .+..|+.+.|.|.+.|. |
T Consensus        80 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~--~~~~g~~v~L~C~~~g~~P  157 (225)
T 1op3_H           80 YLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS--KSTSGGTAALGCLVKDYFP  157 (225)
T ss_dssp             EEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT--TCCCCCEEEEEEEEEEEBS
T ss_pred             EEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc--cccCCCcEEEEEEEEeEEC
Confidence            44478899999999999544321          12356888875    24443222111  24579999999999987 7


Q ss_pred             CC-cEEEEeCCeeCCCC---------cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        127 VP-NITWTRKNNNLPGG---------EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       127 ~p-~~~W~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      .| .+.|++++..+...         ......+.|.|.++...| |.|+|.|.|..+..
T Consensus       158 ~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  215 (225)
T 1op3_H          158 EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  215 (225)
T ss_dssp             SCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTE
T ss_pred             CCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCc
Confidence            66 89999998653210         001122468898888888 99999999976543

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.41  E-value=1.7e-12  Score=89.47  Aligned_cols=125  Identities=15%  Similarity=0.067  Sum_probs=77.4

Q ss_pred             eccEEEeeccc-cccceeEEEEEecccceeEEeeccc---------eeeEEEEEEEEcC-------CeeEEecCCceEEE
Q psy15738         48 SCSYIILATSL-LHYLSYILAMEKEEEERKKKKKRKK---------RKKKKKKKEKRIP-------PRIIYVSGAGKVEV  110 (187)
Q Consensus        48 ~~~~~~~~~~~-~~~~~~~~~v~~~d~g~y~c~~~~~---------~~~~~~~l~v~~~-------p~~~~~~~~~~~~~  110 (187)
                      ..++.+..... ......|.+++.+|.|.|.|.....         .......|.|...       |...... +....+
T Consensus        66 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~-p~~~~~  144 (242)
T 1hxm_B           66 SGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFL-PSIAET  144 (242)
T ss_dssp             TTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCC-CCGGGG
T ss_pred             CCeEEEEecCCCcEEEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEEC-CChhhc
Confidence            34555543221 2334457789999999999944322         1223568888753       3322111 221224


Q ss_pred             ecCCcEEEEeEeccC-CC-CcEEEEeCCe-eCCCCc----EE-----EeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        111 KKGYSVTLECKADGN-PV-PNITWTRKNN-NLPGGE----YS-----YSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~-p~-p~~~W~~~~~-~~~~~~----~~-----~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ..|+.+.|.|.+.|. |. +.+.|++++. .+....    ..     ...+.|.|.++.. + |.|.|.+.|..+..
T Consensus       145 ~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~  219 (242)
T 1hxm_B          145 KLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKN  219 (242)
T ss_dssp             GSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGG
T ss_pred             ccCCCceEEEEEeeEECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCC
Confidence            468999999999987 54 6899999987 443221    00     1124677776664 4 99999999998865

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.40  E-value=1.4e-13  Score=94.26  Aligned_cols=110  Identities=15%  Similarity=0.136  Sum_probs=62.7

Q ss_pred             eeEEEEEecccceeEEeeccce---eeEEEEEEEEc---CCeeEEecCCceEEEecCCcEEEEeEeccCCCC--cEEEEe
Q psy15738         63 SYILAMEKEEEERKKKKKRKKR---KKKKKKKEKRI---PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP--NITWTR  134 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~---~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~~~W~~  134 (187)
                      ..|..++.+|.|.|+|......   ......|.|..   +|.+......  .....|+.+.|.|.+.|.+++  .+.|++
T Consensus        95 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~--~~~~~g~~v~L~C~~~g~~p~~~~v~W~k  172 (233)
T 3bqu_C           95 FTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPS--SEQLTSGGASVVCFLNNFYPKDINVKWKI  172 (233)
T ss_dssp             EC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCC--HHHHHTTEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             EEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCC--HHhhcCCceEEEEEEccccCCceEEEEEE
Confidence            4488899999999999554321   22234566654   4555422221  122368999999999986443  699999


Q ss_pred             CCeeCCCC-cEE-----------EeCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        135 KNNNLPGG-EYS-----------YSGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       135 ~~~~~~~~-~~~-----------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      +|..+... ...           ...+.|.|..+..+|.|.|.|.|.|....
T Consensus       173 ~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          173 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             C-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             CCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            99876544 111           11246888888888999999999997544

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.40  E-value=6.2e-12  Score=99.52  Aligned_cols=109  Identities=22%  Similarity=0.249  Sum_probs=77.4

Q ss_pred             EEEecccceeEEeeccceeeEEEEEE---EEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEE-EE--eCCeeCC
Q psy15738         67 AMEKEEEERKKKKKRKKRKKKKKKKE---KRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNIT-WT--RKNNNLP  140 (187)
Q Consensus        67 ~v~~~d~g~y~c~~~~~~~~~~~~l~---v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~-W~--~~~~~~~  140 (187)
                      .+...+.|.|.|...        .+.   +..+|.+.   .+....+..|+.+.|.|.+.|.|.|.+. |+  +++..+.
T Consensus       141 ~va~~~~G~~~~~~v--------~~~~~~~~~~p~~~---~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~  209 (731)
T 2v5y_A          141 VITSGHQGYLAIDEV--------KVLGHPCTRTPHFL---RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAP  209 (731)
T ss_dssp             EEECSSCCEEEECCB--------EEESSCCSSSCEEC---CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEE
T ss_pred             EEecCCceEEEEeeE--------Eeeecccccccccc---cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCcccc
Confidence            367778888887221        121   22456653   3345788999999999999999999988 77  6776543


Q ss_pred             CCcEEE-----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        141 GGEYSY-----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       141 ~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      ......     ..+.|.|.++...|.|.|.|.|.|..|...+..+.|.|..
T Consensus       210 ~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~  260 (731)
T 2v5y_A          210 LKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKE  260 (731)
T ss_dssp             EEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEec
Confidence            222111     1358999999999999999999999997335677777653

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.40  E-value=2.6e-12  Score=86.47  Aligned_cols=105  Identities=15%  Similarity=0.194  Sum_probs=62.1

Q ss_pred             EEecc---cceeEEeeccceee--EEEEE----EEEcCCeeEEecCCceEEEecCCcEEEEeEeccC-CC-CcEEEEeCC
Q psy15738         68 MEKEE---EERKKKKKRKKRKK--KKKKK----EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGN-PV-PNITWTRKN  136 (187)
Q Consensus        68 v~~~d---~g~y~c~~~~~~~~--~~~~l----~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-p~~~W~~~~  136 (187)
                      +...|   .|.|+|.+......  .+..+    .+..+|.+....... . ...|..+.|.|.+.|. |+ +.+.|+++|
T Consensus        72 i~~~d~~d~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~-~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g  149 (207)
T 1l6x_A           72 VLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSR-D-ELTKNQVSLTCLVKGFYPSDIAVEWESNG  149 (207)
T ss_dssp             CCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCG-G-GGGSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             EEHHHccCCceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCCh-H-HhcCCcEEEEEEEeCeECCCeEEEEEECC
Confidence            44555   99999955433222  12222    334566654333221 1 1246679999999985 44 389999999


Q ss_pred             eeCCCCcE---E-EeC------cEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        137 NNLPGGEY---S-YSG------NSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       137 ~~~~~~~~---~-~~~------~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      ..+.....   . ...      +.|.+......|.|.|.|.|.|....
T Consensus       150 ~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          150 QPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             EEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             eeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence            87643211   1 112      23445444445789999999998654

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.40  E-value=2.7e-12  Score=87.87  Aligned_cols=125  Identities=13%  Similarity=0.051  Sum_probs=77.1

Q ss_pred             eccEEEeecc-ccccceeEEEEEecccceeEEeeccc------eeeEEEEEEEEc---------CCeeEEecCCceEEEe
Q psy15738         48 SCSYIILATS-LLHYLSYILAMEKEEEERKKKKKRKK------RKKKKKKKEKRI---------PPRIIYVSGAGKVEVK  111 (187)
Q Consensus        48 ~~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~~------~~~~~~~l~v~~---------~p~~~~~~~~~~~~~~  111 (187)
                      ..++.+.... .....+.|..++.+|+|.|.|.....      .......|.|..         +|...... +....+.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~-p~~~~v~  143 (230)
T 1ypz_F           65 YKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFL-PSVAETN  143 (230)
T ss_dssp             SSEEEEEECCTTTEEEEEECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEEC-CCHHHHH
T ss_pred             CCeEEEEEcCCCCEEEEEECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEEC-CCchhhc
Confidence            4555554322 12334558889999999999955432      223445788862         23322121 2212234


Q ss_pred             cCCcEEEEeEeccC-CC-CcEEEEe-CCeeCCCCc----E-----EEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        112 KGYSVTLECKADGN-PV-PNITWTR-KNNNLPGGE----Y-----SYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       112 ~g~~~~l~C~~~g~-p~-p~~~W~~-~~~~~~~~~----~-----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      .|+.+.|.|.+.|. |. +.+.|++ +|..+....    .     ....+.|.|..... + |.|.|.+.|..+..
T Consensus       144 ~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~  217 (230)
T 1ypz_F          144 LHKTGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKG  217 (230)
T ss_dssp             HHSCEEEEEEEEEESSCCCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTT
T ss_pred             cCCcceEEEEEeeecCCCeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCC
Confidence            58899999999886 65 5899999 776553221    0     11224678877765 4 99999999987653

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.39  E-value=1.1e-11  Score=93.42  Aligned_cols=111  Identities=14%  Similarity=0.219  Sum_probs=74.3

Q ss_pred             ceeEEEEEecccceeEEeeccc--------eeeEEEEEEEEc----CCeeEEecCCceEEEecCCcEEEEeEeccC-CC-
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK--------RKKKKKKKEKRI----PPRIIYVSGAGKVEVKKGYSVTLECKADGN-PV-  127 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~--------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-  127 (187)
                      .+.|.+++.+|.|.|.|.....        .....+.|.|..    +|.+.... +  ....+|+.+.|.|.+.|. |. 
T Consensus        81 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~-~--~~~~~g~~v~L~C~~~g~~P~~  157 (475)
T 1iga_A           81 YMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLS-L--CSTQPDGNVVIACLVQGFFPQE  157 (475)
T ss_pred             EEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecC-c--cccCCCCeEEEEEEEeeecCCC
Confidence            4558899999999999955432        123456777763    34332111 1  123689999999999997 55 


Q ss_pred             C-cEEEEeCCeeCCCC----------cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        128 P-NITWTRKNNNLPGG----------EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       128 p-~~~W~~~~~~~~~~----------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      | .+.|++++......          ......+.|.|..+...|.|.|.|.|.|..+..
T Consensus       158 p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  216 (475)
T 1iga_A          158 PLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS  216 (475)
T ss_pred             ceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCc
Confidence            4 89999987532110          011122457888888889999999999988743

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.39  E-value=1.2e-11  Score=83.36  Aligned_cols=90  Identities=28%  Similarity=0.550  Sum_probs=70.8

Q ss_pred             cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCC--CCcEEE---eC--cEEEEecCCC-CCCeEEEE
Q psy15738         95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLP--GGEYSY---SG--NSLTVRHTNR-HSAGIYLC  166 (187)
Q Consensus        95 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~--~~~~~~---~~--~~l~i~~~~~-~d~g~y~C  166 (187)
                      .+|.+.  ..+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.  ..+...   ..  ..|.|.++.. .|.|.|.|
T Consensus         5 ~pP~~~--~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C   82 (212)
T 2yd1_A            5 HPPEII--RKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYEC   82 (212)
T ss_dssp             CCCEEE--ECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEE
T ss_pred             CCCEEE--cCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEE
Confidence            466664  33455778999999999999999999999999998875  223322   12  4799999999 99999999


Q ss_pred             EEecCCCCcceeeEEEEEEe
Q psy15738        167 VANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       167 ~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .+.|..|...+..+.|.|..
T Consensus        83 ~~~n~~g~~~~~~~~l~V~~  102 (212)
T 2yd1_A           83 VAENGVGDAVSADATLTIYE  102 (212)
T ss_dssp             EEECSSSCEEEEEEEEEEEC
T ss_pred             EEEeCCCCeEEeeEEEEEec
Confidence            99999988336778887754

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.39  E-value=2.5e-12  Score=90.67  Aligned_cols=118  Identities=9%  Similarity=0.077  Sum_probs=71.5

Q ss_pred             ceeEEEEEecccceeEEeeccce-----eeEEEEEEEEcCCeeEEecCCce---EEEecCCcEEEEeEeccCCCCcEEEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKKR-----KKKKKKKEKRIPPRIIYVSGAGK---VEVKKGYSVTLECKADGNPVPNITWT  133 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~~-----~~~~~~l~v~~~p~~~~~~~~~~---~~~~~g~~~~l~C~~~g~p~p~~~W~  133 (187)
                      ...|..++.+|+|.|+|.+....     .+..+.|.|..+.... ......   ..+.+|+.+.|.|.+. .|.|.+.|+
T Consensus        52 ~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~-~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~  129 (289)
T 3mjg_X           52 VLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGF-LPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLH  129 (289)
T ss_dssp             EEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCB-CCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEE
T ss_pred             EEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCc-ccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEE
Confidence            34477889999999999665433     2233444443222221 111211   5688899999999998 688899999


Q ss_pred             eCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        134 RKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       134 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      +++..............+.    ...|.|.|.|.|.|..+...+..+.|.|.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~  177 (289)
T 3mjg_X          130 EKKGDVALPVPYDHQRGFS----GIFEDRSYICKTTIGDREVDSDAYYVYRL  177 (289)
T ss_dssp             ESSCCSCCCCCEETTTEEE----ECCCSSEEEEEEEETTEEEECCCEEEEEC
T ss_pred             eCCCCCccceeecCCcCee----eeccCcEEEEEEEeCCceeeeeeEEEEec
Confidence            8752221111111112222    25689999999998776655555666654

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.39  E-value=1.5e-12  Score=97.08  Aligned_cols=110  Identities=17%  Similarity=0.235  Sum_probs=77.2

Q ss_pred             ceeEEEEEecccceeEEeeccc--eeeEEEEEEEEc----CCeeEEecCCceEEEecCCcEEEEeEeccC-CCC-cEEEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK--RKKKKKKKEKRI----PPRIIYVSGAGKVEVKKGYSVTLECKADGN-PVP-NITWT  133 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~~~W~  133 (187)
                      .+.|..++.+|+|.|+|.+...  .......|.|..    +|.+......  ..+.+|+.+.|.|.+.|. |.| .+.|+
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~--~~~~~G~~v~L~C~~~g~~P~p~~v~W~  156 (434)
T 1igy_B           79 NIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPG--SAAQTNSMVTLGCLVKGYFPEPVTVTWN  156 (434)
T ss_dssp             CEEECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCC--CCCCCTTEEEEEEEEEEEBSSCCEEEET
T ss_pred             EEEECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCc--cccCCCCcEEEEEEEeeecCCCeEEEEe
Confidence            4558899999999999955432  233456777763    3444322211  234689999999999986 666 89999


Q ss_pred             eCCeeCC---------CCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        134 RKNNNLP---------GGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       134 ~~~~~~~---------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +++....         .+.+ ...+.|.|.++..+| |.|.|.|.|..|..
T Consensus       157 k~~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~  205 (434)
T 1igy_B          157 SGSLSSGVHTFPAVLQSDLY-TLSSSVTVPSSPRPS-ETVTCNVAHPASST  205 (434)
T ss_dssp             TTTBCSSEEECCCEECSSCE-EEEEEEEEETTTTTS-SCCEEEEECTTTTC
T ss_pred             eCCcCCCeEecCceecCCcE-EEEEEEEEcchhcCC-CcEEEEEEeCCCCc
Confidence            9986431         1111 123568999999888 99999999998874

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.39  E-value=3e-12  Score=79.30  Aligned_cols=79  Identities=20%  Similarity=0.390  Sum_probs=62.2

Q ss_pred             ceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeC---------CCCcEEEe-----CcEEEEecCCCCCCeEEEEEEecC
Q psy15738        106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNNNL---------PGGEYSYS-----GNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~---------~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      ....+.+|+++.|.|.+.+.|.+.+.|++.+..+         ...+....     ...|.|.++..+|+|.|.|.+.|.
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~   88 (124)
T 3rbg_A            9 ETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSD   88 (124)
T ss_dssp             EEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEESS
T ss_pred             ccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEcC
Confidence            3567889999999999999999999999765431         22222211     368999999999999999999999


Q ss_pred             CCCcceeeEEEEEEe
Q psy15738        172 VGSSAAASIALHVLC  186 (187)
Q Consensus       172 ~g~~~s~~~~l~v~~  186 (187)
                       |.. +..+.|.|.+
T Consensus        89 -g~~-~~~~~l~V~~  101 (124)
T 3rbg_A           89 -SVS-TKEVKVIVLA  101 (124)
T ss_dssp             -SEE-EEEEEEEEEC
T ss_pred             -CCC-cEEEEEEEEe
Confidence             766 6888888864

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.39  E-value=4.3e-12  Score=85.91  Aligned_cols=124  Identities=13%  Similarity=0.120  Sum_probs=75.0

Q ss_pred             ccEEEeeccc-cccceeEEEEEecccceeEEeeccc-----eeeEEEEEEEEc----CCeeEEecCCceEEEecCCcEEE
Q psy15738         49 CSYIILATSL-LHYLSYILAMEKEEEERKKKKKRKK-----RKKKKKKKEKRI----PPRIIYVSGAGKVEVKKGYSVTL  118 (187)
Q Consensus        49 ~~~~~~~~~~-~~~~~~~~~v~~~d~g~y~c~~~~~-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l  118 (187)
                      .++.+..... ....+.|..++.+|+|.|.|.....     .......|.|..    +|.+......  ..+..|+.+.|
T Consensus        65 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~--~~~~~g~~v~L  142 (215)
T 1c5d_H           65 SRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPG--CGDTTSSTVTL  142 (215)
T ss_dssp             GGEEEEEETTTTEEEEEESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCC--SSCCCCSSEEE
T ss_pred             CcEEEEeeCCCceEEEEECCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCC--hhhccCCcEEE
Confidence            4555543221 1234558889999999999955432     223446788863    3444322211  12467999999


Q ss_pred             EeEeccC-CCC-cEEEEeCCeeCCCC--cEEEeCcEE----EEecCCCCCCeEEEEEEecCCCCc
Q psy15738        119 ECKADGN-PVP-NITWTRKNNNLPGG--EYSYSGNSL----TVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       119 ~C~~~g~-p~p-~~~W~~~~~~~~~~--~~~~~~~~l----~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      .|.+.|. |.| .+.|++++..+...  ......+..    .+......| |.|.|.+.|..+..
T Consensus       143 ~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~  206 (215)
T 1c5d_H          143 GCLVKGYFPEPVTVTWNSGALSSDVHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASST  206 (215)
T ss_dssp             EEEEEEEBSSCCEEEEGGGTTCCSCCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTE
T ss_pred             EEEEeeeEcCCcEEEEccCCccCceEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCc
Confidence            9999987 777 89999998654211  111111111    122444456 99999999988765

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1.8e-12  Score=77.73  Aligned_cols=73  Identities=14%  Similarity=0.287  Sum_probs=57.6

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEE--e--CcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSY--S--GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~--~--~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      ..+.+|+.+.|.|.+.+.|.+ +.|++++..+... +...  .  ...|.|.++..+|+|.|.|.+.|..+     .+.|
T Consensus        20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~-----~~~l   93 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSA-----FFGV   93 (104)
T ss_dssp             EEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSCCC-----CEEE
T ss_pred             EEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCceE-----EEEE
Confidence            678899999999999999988 9999999887543 2221  1  24799999999999999999998633     4556


Q ss_pred             EEEe
Q psy15738        183 HVLC  186 (187)
Q Consensus       183 ~v~~  186 (187)
                      .|..
T Consensus        94 ~V~~   97 (104)
T 2e6p_A           94 TVQD   97 (104)
T ss_dssp             EEEC
T ss_pred             EEcC
Confidence            5543

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.38  E-value=6.4e-12  Score=87.67  Aligned_cols=123  Identities=15%  Similarity=0.128  Sum_probs=78.1

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEEeeccc-----eeeEEEEEEEEc----CCeeEEecCCceEEEecCCcEEE
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKKKKRKK-----RKKKKKKKEKRI----PPRIIYVSGAGKVEVKKGYSVTL  118 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~~-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l  118 (187)
                      .++.+.... .....+.|..++.+|+|.|.|.....     .......|.|..    +|.+.... +. ..+..|+.+.|
T Consensus        72 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-p~-~~v~~g~~v~L  149 (261)
T 2xqy_G           72 DKVTLTVDKSSSTVYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLA-PV-CGDTTGSSVTL  149 (261)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEEC-CC-CC--CCSEEEE
T ss_pred             CcEEEEecCCCCEEEEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeC-CC-ccccCCCcEEE
Confidence            455544321 12234558889999999999954432     122345788864    34443222 11 13467999999


Q ss_pred             EeEeccC-CCC-cEEEEeCCeeCCC---C-----cEEEeCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        119 ECKADGN-PVP-NITWTRKNNNLPG---G-----EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       119 ~C~~~g~-p~p-~~~W~~~~~~~~~---~-----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      .|.+.+. |.+ .+.|++++..+..   .     ......+.|.|..+...| |.|.|.|.|....
T Consensus       150 ~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~  214 (261)
T 2xqy_G          150 GCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  214 (261)
T ss_dssp             EEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             EEEEEeEeCCCCEEEEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence            9999885 666 8999999865421   1     111123578898888878 9999999996543

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1e-12  Score=78.43  Aligned_cols=77  Identities=16%  Similarity=0.243  Sum_probs=59.1

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-----EE-E-e--CcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-----YS-Y-S--GNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-----~~-~-~--~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      .+....+.+|+.+.|.|.+.+.| +.+.|++++..+....     +. . .  ...|.|.++..+|+|.|.|.|.|    
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----   88 (101)
T 2edk_A           14 PLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNG----   88 (101)
T ss_dssp             CCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEECSS----
T ss_pred             cCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEEcC----
Confidence            34457889999999999999988 9999999998875442     12 1 1  13699999999999999999987    


Q ss_pred             cceeeEEEEEEe
Q psy15738        175 SAAASIALHVLC  186 (187)
Q Consensus       175 ~~s~~~~l~v~~  186 (187)
                      . +..+.|.|..
T Consensus        89 ~-~~~~~l~V~~   99 (101)
T 2edk_A           89 G-QCEAELIVEE   99 (101)
T ss_dssp             C-EECCBEEEEC
T ss_pred             C-cEEEEEEEeC
Confidence            2 3455566654

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.38  E-value=9.2e-12  Score=74.07  Aligned_cols=73  Identities=19%  Similarity=0.359  Sum_probs=57.7

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEE--e--CcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSY--S--GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~--~--~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      ..+.+|+.+.|.|.+. .|.|.+.|++++..+... ++..  .  ...|.|.++..+|+|.|.|.|    |.. +..+.|
T Consensus        18 ~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----g~~-~~~~~l   91 (100)
T 2yuv_A           18 YQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDE-KCSTEL   91 (100)
T ss_dssp             EEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE----TTE-EEEEEE
T ss_pred             cEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE----CCc-eEEEEE
Confidence            5678999999999998 688999999999887543 2322  1  136999999999999999999    555 567777


Q ss_pred             EEEe
Q psy15738        183 HVLC  186 (187)
Q Consensus       183 ~v~~  186 (187)
                      .|..
T Consensus        92 ~V~~   95 (100)
T 2yuv_A           92 FVRS   95 (100)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            7754

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.38  E-value=5.7e-12  Score=83.81  Aligned_cols=88  Identities=15%  Similarity=0.265  Sum_probs=68.7

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEec-cCCCCcEEEEeCCeeCCCCcE---EEe-----------CcEEEEecCCCCC
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKAD-GNPVPNITWTRKNNNLPGGEY---SYS-----------GNSLTVRHTNRHS  160 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~---~~~-----------~~~l~i~~~~~~d  160 (187)
                      +|.+.  ..+....+.+|+.+.|.|.+. |.|.+.+.|++++..+.....   ...           .+.|.|.++...|
T Consensus         2 ~~~~~--~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   79 (195)
T 2c5d_C            2 ESPFV--GNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSD   79 (195)
T ss_dssp             CCSEE--ECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTT
T ss_pred             CCeec--cChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccC
Confidence            44553  335567889999999999999 999999999999998866521   111           3579999999999


Q ss_pred             CeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        161 AGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       161 ~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      .|.|.|.+.|..|...+..+.|.|.
T Consensus        80 ~G~Y~C~~~~~~~~~~~~~~~l~V~  104 (195)
T 2c5d_C           80 TGQYQCLVFLGHQTFVSQPGYVGLE  104 (195)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             CcEEEEEEEeCCCceecccEEEEEe
Confidence            9999999999877654455777764

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.37  E-value=1.2e-12  Score=90.93  Aligned_cols=123  Identities=15%  Similarity=0.183  Sum_probs=78.8

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEEeeccc------eeeEEEEEEEE----cCCeeEEecCCceEEEecCCcEE
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKKKKRKK------RKKKKKKKEKR----IPPRIIYVSGAGKVEVKKGYSVT  117 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~~------~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~  117 (187)
                      .++.+.... .......|.+++.+|+|.|.|.....      .......|.|.    .+|.+....  ....+..|+.+.
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~--~~~~~~~g~~v~  143 (253)
T 3liz_H           66 GRFTISRDNAKNTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLA--PGSAAQTNSMVT  143 (253)
T ss_dssp             TTCEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEEC--C------CCEEE
T ss_pred             CcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEec--CCcccCCCCcEE
Confidence            455554432 22233558889999999999955432      22344577776    344443222  123455799999


Q ss_pred             EEeEecc-CCCC-cEEEEeCCeeCC---------CCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        118 LECKADG-NPVP-NITWTRKNNNLP---------GGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       118 l~C~~~g-~p~p-~~~W~~~~~~~~---------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      |.|.+.| .|.+ .+.|++++....         .+ .....+.|.+......| |.|+|.+.|..+..
T Consensus       144 L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g-~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~  210 (253)
T 3liz_H          144 LGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD-LYTLSSSVTVPSSTWPS-ETVTCNVAHPASST  210 (253)
T ss_dssp             EEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETT-EEEEEEEEEEETTSTTT-SCCEEEEEEGGGTE
T ss_pred             EEEEEeeEeCCCeEEEEEeCCeecceEeCCccccCC-eEEEEEEEEEcHHHCCC-ceEEEEEEECCCCc
Confidence            9999998 6666 799999986321         11 11223678999999889 99999999987754

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.37  E-value=3.6e-12  Score=84.46  Aligned_cols=86  Identities=21%  Similarity=0.366  Sum_probs=67.5

Q ss_pred             CCeeEEecCCceEEEec-CCcEEEEeEeccCCC--CcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738         96 PPRIIYVSGAGKVEVKK-GYSVTLECKADGNPV--PNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~-g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      +|.+..   +....+.+ |+.+.|.|.+.+.|.  +.+.|++++..+...........|.|.++..+|.|.|.|.+.|. 
T Consensus         3 ~P~i~~---~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~-   78 (190)
T 2wv3_A            3 EPRIVT---SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFV-   78 (190)
T ss_dssp             CCEEEE---CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCCSEEEEEESSCCGGGCEEEEEEEEET-
T ss_pred             CCcccc---cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEeccEEEEEecCCcccCEEEEEEEEeC-
Confidence            565542   22345556 999999999999887  78999999998876544335578999999999999999999998 


Q ss_pred             CCcceeeEEEEEEe
Q psy15738        173 GSSAAASIALHVLC  186 (187)
Q Consensus       173 g~~~s~~~~l~v~~  186 (187)
                      +.. +..+.|.|.+
T Consensus        79 ~~~-~~~~~l~V~~   91 (190)
T 2wv3_A           79 SAP-KANATIEVKA   91 (190)
T ss_dssp             TEE-EEEEEEEEEC
T ss_pred             Ccc-cccEEEEEec
Confidence            665 6788887754

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.37  E-value=7.7e-12  Score=82.21  Aligned_cols=84  Identities=24%  Similarity=0.420  Sum_probs=67.6

Q ss_pred             cCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEE---e----CcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSY---S----GNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~---~----~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......   .    ...|.|.++...|.|.|.|.+.|..|..
T Consensus         7 ~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~   86 (182)
T 1rhf_A            7 GAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETE   86 (182)
T ss_dssp             CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCE
T ss_pred             eCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcE
Confidence            33455678999999999999999999999999998876653221   1    2679999999999999999999987765


Q ss_pred             ceeeEEEEEEe
Q psy15738        176 AAASIALHVLC  186 (187)
Q Consensus       176 ~s~~~~l~v~~  186 (187)
                      .+..+.|.|.+
T Consensus        87 ~~~~~~l~V~~   97 (182)
T 1rhf_A           87 ISQPVWLTVEG   97 (182)
T ss_dssp             ECCCEEEEEEC
T ss_pred             EEEEEEEEEec
Confidence            45677777753

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.37  E-value=8.6e-12  Score=74.82  Aligned_cols=84  Identities=18%  Similarity=0.307  Sum_probs=61.0

Q ss_pred             cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC--cEEE-eCc---EEEEecCCCCCCeEEEEEE
Q psy15738         95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG--EYSY-SGN---SLTVRHTNRHSAGIYLCVA  168 (187)
Q Consensus        95 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~~~-~~~---~l~i~~~~~~d~g~y~C~~  168 (187)
                      .+|.+.. ..+....+.+|+.+.|.|.+ +.|.+.+.|++++..+...  ++.. ..+   .|.|.++..+|+|.|.|.+
T Consensus        14 ~~p~f~~-~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   91 (104)
T 1pd6_A           14 KSTAFQK-KLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV   91 (104)
T ss_dssp             TTSSCSE-ECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEE
T ss_pred             CCCEEEE-cCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEE
Confidence            3455542 22334678999999999999 7888999999999887554  2222 223   8999999999999999999


Q ss_pred             ecCCCCcceeeEEEEEE
Q psy15738        169 NNMVGSSAAASIALHVL  185 (187)
Q Consensus       169 ~n~~g~~~s~~~~l~v~  185 (187)
                      .+    . +..+.|.|.
T Consensus        92 ~~----~-~~~~~l~V~  103 (104)
T 1pd6_A           92 GG----E-KCSTELFVK  103 (104)
T ss_dssp             TT----E-EECCEEEEE
T ss_pred             CC----C-cEEEEEEEe
Confidence            44    3 345556553

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.37  E-value=4.8e-12  Score=74.60  Aligned_cols=77  Identities=27%  Similarity=0.507  Sum_probs=59.4

Q ss_pred             cCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEE--eC--cEEEEecCCCCCCeEEEEEEecCCCCcce
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSY--SG--NSLTVRHTNRHSAGIYLCVANNMVGSSAA  177 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~--~~--~~l~i~~~~~~d~g~y~C~~~n~~g~~~s  177 (187)
                      ..+....+.+|+.+.|.|.+ +.|.+.+.|++++..+... ++..  ..  ..|.|.++...|+|.|.|.+    |.. +
T Consensus        13 ~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g~~-~   86 (95)
T 2k1m_A           13 KKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSS-K   86 (95)
T ss_dssp             BCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----TTE-E
T ss_pred             eCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----CCc-e
Confidence            33456788999999999999 7888999999999876543 2221  11  36999999999999999999    444 4


Q ss_pred             eeEEEEEE
Q psy15738        178 ASIALHVL  185 (187)
Q Consensus       178 ~~~~l~v~  185 (187)
                      ..+.|.|.
T Consensus        87 ~~~~l~V~   94 (95)
T 2k1m_A           87 VKFDLKVI   94 (95)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            66777764

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.37  E-value=1.2e-11  Score=83.60  Aligned_cols=80  Identities=25%  Similarity=0.397  Sum_probs=66.6

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc---EEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcce
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---YSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAA  177 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~---~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s  177 (187)
                      +....+..|+.+.|.|.+.|.|.|.+.|++++..+....   ...    ....|.|.++...|.|.|.|.|.|..|.. +
T Consensus        25 p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~  103 (215)
T 3mtr_A           25 PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQE-S  103 (215)
T ss_dssp             CSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEE-E
T ss_pred             CceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCce-E
Confidence            445778899999999999999999999999999886542   222    14689999999999999999999999988 5


Q ss_pred             eeEEEEEE
Q psy15738        178 ASIALHVL  185 (187)
Q Consensus       178 ~~~~l~v~  185 (187)
                      ..+.|.|.
T Consensus       104 ~~~~l~v~  111 (215)
T 3mtr_A          104 LEFILVQA  111 (215)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEC
Confidence            77777764

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.36  E-value=5.4e-12  Score=83.96  Aligned_cols=89  Identities=25%  Similarity=0.468  Sum_probs=69.9

Q ss_pred             cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC--cEEE---eCc--EEEEecCCCCCCeEEEEE
Q psy15738         95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG--EYSY---SGN--SLTVRHTNRHSAGIYLCV  167 (187)
Q Consensus        95 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~~~---~~~--~l~i~~~~~~d~g~y~C~  167 (187)
                      .+|.+.  ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...  +...   ..+  .|.|.++...|.|.|.|.
T Consensus         3 ~~P~~~--~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (197)
T 2j8h_A            3 MAPHFK--EELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (197)
T ss_dssp             CCCEEE--ECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEE
T ss_pred             CCCEEE--EcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEE
Confidence            356664  3345578899999999999999999999999999887543  2221   122  899999999999999999


Q ss_pred             EecCCCCcceeeEEEEEEe
Q psy15738        168 ANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       168 ~~n~~g~~~s~~~~l~v~~  186 (187)
                      +.|..|.. +..+.|.|.+
T Consensus        81 ~~n~~g~~-~~~~~l~V~~   98 (197)
T 2j8h_A           81 ATNQGGSV-SGTASLEVEV   98 (197)
T ss_dssp             EEETTEEE-EEEEEEEEEE
T ss_pred             EEECCCce-eEEEEEEEcC
Confidence            99998876 5777777753

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=2.5e-11  Score=73.52  Aligned_cols=79  Identities=18%  Similarity=0.238  Sum_probs=60.7

Q ss_pred             ecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc----------E-EEeC----cEEEEecCCCCCCeEEEE
Q psy15738        102 VSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE----------Y-SYSG----NSLTVRHTNRHSAGIYLC  166 (187)
Q Consensus       102 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~----------~-~~~~----~~l~i~~~~~~d~g~y~C  166 (187)
                      ...+....+.+|+.+.|.|.+.+  .|.+.|++||..+....          . ....    ..|.|.++..+|+|.|.|
T Consensus        12 ~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~   89 (112)
T 2e6q_A           12 VAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVG   89 (112)
T ss_dssp             EECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEE
T ss_pred             ecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEE
Confidence            45556788999999999999987  77899999999986653          3 3321    279999999999999977


Q ss_pred             EEecCCCCcceeeEEEEEEe
Q psy15738        167 VANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       167 ~~~n~~g~~~s~~~~l~v~~  186 (187)
                      ...+   .. ..++.|.|..
T Consensus        90 ~~~~---~~-~ssA~L~V~~  105 (112)
T 2e6q_A           90 FSCP---GV-QDSAALTIQE  105 (112)
T ss_dssp             EEET---TE-EEEEEEEEEC
T ss_pred             EEEC---Ce-eEEEEEEEeC
Confidence            5544   23 3577788764

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=1.6e-11  Score=73.38  Aligned_cols=83  Identities=17%  Similarity=0.331  Sum_probs=63.1

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEE-eCc---EEEEecCCCCCCeEEEEEEec
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSY-SGN---SLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~-~~~---~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      +|.+  ...+....+.+|+.+.|.|. .+.|.+.+.|++++..+... ++.. ..+   .|.|.++..+|+|.|.|.   
T Consensus         8 pp~~--~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~---   81 (103)
T 2dku_A            8 ANCF--TEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD---   81 (103)
T ss_dssp             CCCC--SSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE---
T ss_pred             CCEe--EecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE---
Confidence            4444  33445678899999999999 58899999999999887644 3322 223   799999999999999998   


Q ss_pred             CCCCcceeeEEEEEEe
Q psy15738        171 MVGSSAAASIALHVLC  186 (187)
Q Consensus       171 ~~g~~~s~~~~l~v~~  186 (187)
                       .|.. +..+.|.|..
T Consensus        82 -~g~~-~~~~~l~V~~   95 (103)
T 2dku_A           82 -IGQA-QSRAQLLVQG   95 (103)
T ss_dssp             -CSSC-BCCEEEEEEC
T ss_pred             -eCCc-eEEEEEEEeC
Confidence             5555 4677887754

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.36  E-value=2.4e-12  Score=96.58  Aligned_cols=124  Identities=10%  Similarity=0.089  Sum_probs=81.4

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEEeeccc--------------eeeEEEEEEEEc----CCeeEEecCCceEE
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKKKKRKK--------------RKKKKKKKEKRI----PPRIIYVSGAGKVE  109 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~~--------------~~~~~~~l~v~~----~p~~~~~~~~~~~~  109 (187)
                      .++.+.... .....+.|.+++.+|+|.|+|.+...              .......|.|..    +|.+.....  ...
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~--~~~  143 (457)
T 1hzh_H           66 DRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAP--SSK  143 (457)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECC--CSC
T ss_pred             CceEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCc--ccc
Confidence            455544322 12234558899999999999955433              123456778765    454432221  123


Q ss_pred             EecCCcEEEEeEeccC-CC-CcEEEEeCCeeCCCCc---------EEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        110 VKKGYSVTLECKADGN-PV-PNITWTRKNNNLPGGE---------YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +.+|+.+.|.|.+.|. |. +.+.|++++..+....         .....+.|.|.++..+| |.|.|.|.|..+..
T Consensus       144 ~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~  219 (457)
T 1hzh_H          144 STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  219 (457)
T ss_dssp             CCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTE
T ss_pred             ccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCc
Confidence            5789999999999987 64 7899999986532111         01112468999999889 99999999977653

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=1.2e-11  Score=75.15  Aligned_cols=74  Identities=20%  Similarity=0.367  Sum_probs=58.4

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE-e-C--cEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY-S-G--NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA  181 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~-~-~--~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~  181 (187)
                      ...+..|+.+.|.|.+. .|.+.+.|++++..+.... ... . .  ..|.|.++..+|+|.|.|.+.|    . +..+.
T Consensus        22 ~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~-~~~~~   95 (113)
T 2cpc_A           22 YVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD----E-SASFT   95 (113)
T ss_dssp             EEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS----C-EEEEE
T ss_pred             eEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec----C-cEEEE
Confidence            35678899999999995 7888999999998875432 222 1 2  5799999999999999999998    3 46777


Q ss_pred             EEEEe
Q psy15738        182 LHVLC  186 (187)
Q Consensus       182 l~v~~  186 (187)
                      |.|..
T Consensus        96 l~V~~  100 (113)
T 2cpc_A           96 VTVTE  100 (113)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            77754

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.35  E-value=6.7e-12  Score=75.04  Aligned_cols=83  Identities=31%  Similarity=0.533  Sum_probs=61.3

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEE-eCc---EEEEecCCCCCCeEEEEEEec
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSY-SGN---SLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~-~~~---~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      +|.+.  ..+....+.+|+.+.|.|.+.+.|.+ +.|++++..+... ++.. ..+   .|.|.++..+|+|.|.|.   
T Consensus         8 pp~~~--~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~---   81 (103)
T 2e7b_A            8 PVRFQ--EALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS---   81 (103)
T ss_dssp             CCCCT--BCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE---
T ss_pred             CCEEE--ecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE---
Confidence            45442  33445788999999999999999988 9999999877543 2322 222   599999999999999998   


Q ss_pred             CCCCcceeeEEEEEEe
Q psy15738        171 MVGSSAAASIALHVLC  186 (187)
Q Consensus       171 ~~g~~~s~~~~l~v~~  186 (187)
                       .|.. +..+.|.|..
T Consensus        82 -~g~~-~~~~~l~V~~   95 (103)
T 2e7b_A           82 -FGDQ-TTSATLTVTA   95 (103)
T ss_dssp             -CSSC-BCCBCEEEEC
T ss_pred             -ECCc-EEEEEEEEEe
Confidence             4444 4566666643

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.35  E-value=1e-11  Score=78.98  Aligned_cols=80  Identities=19%  Similarity=0.328  Sum_probs=63.7

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEE---------eCCeeCCCCcEEEe-----CcEEEEecCCCCCCeEEEEEEec
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWT---------RKNNNLPGGEYSYS-----GNSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~---------~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      +....+..|+++.|.|.+.+.|.+.+.|+         +++..+...+....     ...|.|.++..+|+|.|.|.+.|
T Consensus        45 p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n  124 (145)
T 1z9m_A           45 TSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFT  124 (145)
T ss_dssp             CCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecCCCCeEEEEECCCChhhCEEEEEEEEc
Confidence            44578899999999999999988899999         44444444443321     36799999999999999999999


Q ss_pred             CCCCcceeeEEEEEEe
Q psy15738        171 MVGSSAAASIALHVLC  186 (187)
Q Consensus       171 ~~g~~~s~~~~l~v~~  186 (187)
                      . |.. +..+.|.|..
T Consensus       125 ~-~~~-~~~~~L~V~~  138 (145)
T 1z9m_A          125 M-PVR-TAKSLVTVLG  138 (145)
T ss_dssp             S-SCE-EEEEEEEEEC
T ss_pred             C-CCc-eEEEEEEEEe
Confidence            9 766 6888888864

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.34  E-value=6.3e-12  Score=83.48  Aligned_cols=88  Identities=32%  Similarity=0.551  Sum_probs=68.0

Q ss_pred             cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE-eC---cEEEEecCCCCCCeEEEEEEe
Q psy15738         95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY-SG---NSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus        95 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~-~~---~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      .+|.+.  ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ... ..   ..|.|.++..+|.|.|.|.+.
T Consensus         6 ~~P~~~--~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (197)
T 3lcy_A            6 EAPGIR--KEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIAT   83 (197)
T ss_dssp             EEEEEE--ECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEE
T ss_pred             CCCccc--ccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEE
Confidence            345443  33445678999999999999999999999999998775442 222 22   279999999999999999999


Q ss_pred             cCCCCcceeeEEEEEE
Q psy15738        170 NMVGSSAAASIALHVL  185 (187)
Q Consensus       170 n~~g~~~s~~~~l~v~  185 (187)
                      |..|.. ...+.|.|.
T Consensus        84 n~~~~~-~~~~~l~v~   98 (197)
T 3lcy_A           84 NEVGEV-ETSSKLLLQ   98 (197)
T ss_dssp             CSSCEE-EEEEEEEEE
T ss_pred             CCCCce-eEEEEEEEE
Confidence            998876 467777664

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.34  E-value=2e-11  Score=91.20  Aligned_cols=124  Identities=16%  Similarity=0.167  Sum_probs=81.5

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEEeeccc-----eeeEEEEEEEEc----CCeeEEecCCceEEEecCCcEEE
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKKKKRKK-----RKKKKKKKEKRI----PPRIIYVSGAGKVEVKKGYSVTL  118 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~~-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l  118 (187)
                      .++.+.... .....+.|..++.+|.|.|.|.+...     .......|.|..    +|.+......  ..+.+|+.+.|
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~--~~~~~g~~v~L  143 (444)
T 1igt_B           66 GRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPV--CGDTTGSSVTL  143 (444)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCC--SSCCCSSCEEE
T ss_pred             CceEEEEeCCCCeEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEeccc--ccCCCCCcEEE
Confidence            455554322 12234558889999999999955432     223446777763    3444322211  12468999999


Q ss_pred             EeEeccC-CCC-cEEEEeCCeeCCC---C-----cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        119 ECKADGN-PVP-NITWTRKNNNLPG---G-----EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       119 ~C~~~g~-p~p-~~~W~~~~~~~~~---~-----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      .|.+.|. |.| .+.|++++.....   .     ......+.|.|.++...| |.|.|.|.|..+..
T Consensus       144 ~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~  209 (444)
T 1igt_B          144 GCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST  209 (444)
T ss_dssp             EEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTE
T ss_pred             EEEEcceeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCc
Confidence            9999885 766 8999999875310   0     111123568899999889 99999999998864

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=2.9e-12  Score=76.88  Aligned_cols=79  Identities=19%  Similarity=0.246  Sum_probs=60.2

Q ss_pred             cCCceEEEecCCcEEEEeEeccCCC-CcEEEEeCCeeCCCC-cEEE--e--CcEEEEecCCCCCCeEEEEEEecCCCCcc
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNPV-PNITWTRKNNNLPGG-EYSY--S--GNSLTVRHTNRHSAGIYLCVANNMVGSSA  176 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p~-p~~~W~~~~~~~~~~-~~~~--~--~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  176 (187)
                      ..+....+.+|+.+.|.|.+.+.|. +.+.|+++|..+... ++..  .  ...|.|.++..+|+|.|.|.|.|    . 
T Consensus        13 ~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~----~-   87 (104)
T 2eny_A           13 KRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRG----L-   87 (104)
T ss_dssp             BCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETT----E-
T ss_pred             ecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECC----e-
Confidence            4455678899999999999998875 479999999887543 2222  1  23799999999999999998865    3 


Q ss_pred             eeeEEEEEEe
Q psy15738        177 AASIALHVLC  186 (187)
Q Consensus       177 s~~~~l~v~~  186 (187)
                      +..+.|.|..
T Consensus        88 ~~~a~L~V~~   97 (104)
T 2eny_A           88 TSKASLIVRE   97 (104)
T ss_dssp             EEEECEEEEC
T ss_pred             eEEEEEEEeC
Confidence            3566777754

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.33  E-value=3.4e-11  Score=81.32  Aligned_cols=110  Identities=8%  Similarity=-0.001  Sum_probs=71.9

Q ss_pred             eeEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEec----cCCCC--cEEEEe
Q psy15738         63 SYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKAD----GNPVP--NITWTR  134 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~----g~p~p--~~~W~~  134 (187)
                      ..|..+..+|.|.|+|.+  ..+..+..+.|.|..+|.....    ......+..+.+.|...    +.|..  .+.|.+
T Consensus        78 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~----~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~  153 (215)
T 3mtr_A           78 LEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSI----DQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRA  153 (215)
T ss_dssp             EEECCCSGGGCEEEEEEEECSSCEEEEEEEEEECCCCCCCEE----EEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEE
T ss_pred             EEEecCChhhCeEEEEEEEECCCceEEEEEEEECCCCCCCcc----eEEEEecceEEEEEecCCccCCCceEEEEEEEEE
Confidence            337788889999999944  4555667778888766654211    11123467788888632    22333  367887


Q ss_pred             CCeeCCCCcEEE-----eCcEEEEecCCCCCCeEEEEEEecCCCCcc
Q psy15738        135 KNNNLPGGEYSY-----SGNSLTVRHTNRHSAGIYLCVANNMVGSSA  176 (187)
Q Consensus       135 ~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  176 (187)
                      ++...-......     ....|.|.++...+.|.|.|.|.|..|...
T Consensus       154 ~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~  200 (215)
T 3mtr_A          154 VGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGE  200 (215)
T ss_dssp             TTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCC
T ss_pred             CCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccC
Confidence            764311110000     126799999999999999999999998864

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.33  E-value=5.1e-12  Score=91.46  Aligned_cols=64  Identities=16%  Similarity=0.212  Sum_probs=43.6

Q ss_pred             cCCcEEEEeEeccCCC--CcEEEEeCCeeCCCCcE---E-Ee------CcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        112 KGYSVTLECKADGNPV--PNITWTRKNNNLPGGEY---S-YS------GNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~---~-~~------~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      .|..+.|.|.+.|.++  +.+.|+++|..+.....   . ..      ...|.+......|.|.|.|.|.|.....
T Consensus       256 ~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~~  331 (344)
T 1za6_B          256 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN  331 (344)
T ss_dssp             GSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTSTT
T ss_pred             cCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCCCC
Confidence            4667999999998533  57999999987643211   0 11      1235555555567999999999976543

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.33  E-value=2.4e-12  Score=88.72  Aligned_cols=108  Identities=14%  Similarity=0.156  Sum_probs=65.6

Q ss_pred             EEEEEecccceeEEeecccee----eEEEEE--EEEcCCeeEEecCCceEEEecCCcEEEEeEeccC-CC-CcEEEEeCC
Q psy15738         65 ILAMEKEEEERKKKKKRKKRK----KKKKKK--EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGN-PV-PNITWTRKN  136 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~~~----~~~~~l--~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-p~~~W~~~~  136 (187)
                      |..++.+|.|.|+|.......    ..++.+  .+..+|.+.......  ....|+.+.|.|.+.|. |+ ..+.|+++|
T Consensus        86 I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~--~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g  163 (239)
T 1i1c_A           86 IVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPK--EEMTQSQVSITCMVKGFYPPDIYTEWKMNG  163 (239)
T ss_dssp             CCHHHHHTTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCG--GGGGSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             EEhhHccCCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCCh--HHhcCCcEEEEEEEeeeECCCeEEEEEECC
Confidence            556677799999995543322    122222  344667665333221  11347889999999985 44 379999999


Q ss_pred             eeCCCCcE---E-EeC------cEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        137 NNLPGGEY---S-YSG------NSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       137 ~~~~~~~~---~-~~~------~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      ..+.....   . ...      ..|.+......|.|.|+|.|.|....
T Consensus       164 ~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          164 QPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             EECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence            87743211   1 111      23444444445689999999997644

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.33  E-value=1.2e-11  Score=81.87  Aligned_cols=84  Identities=31%  Similarity=0.478  Sum_probs=66.2

Q ss_pred             cCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCC--CcEEE--eCcEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG--GEYSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAA  178 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~--~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~  178 (187)
                      ..+....+.+|+.+.|.|.+.|.|.+.+.|++++..+..  .+...  ....|.|.++...|.|.|.|.+.|..|...+.
T Consensus        12 ~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~   91 (192)
T 2iep_A           12 TPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVES   91 (192)
T ss_dssp             SCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEE
T ss_pred             cCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEe
Confidence            334457789999999999999999999999999988753  23322  34579999999999999999999998875455


Q ss_pred             eEEEEEEe
Q psy15738        179 SIALHVLC  186 (187)
Q Consensus       179 ~~~l~v~~  186 (187)
                      .+.|.|.+
T Consensus        92 ~~~l~v~~   99 (192)
T 2iep_A           92 CGALQVKM   99 (192)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            66666543

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.32  E-value=9.4e-12  Score=93.31  Aligned_cols=106  Identities=16%  Similarity=0.203  Sum_probs=64.1

Q ss_pred             EEecc---cceeEEeeccc--eeeEEEEE----EEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCC--cEEEEeCC
Q psy15738         68 MEKEE---EERKKKKKRKK--RKKKKKKK----EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP--NITWTRKN  136 (187)
Q Consensus        68 v~~~d---~g~y~c~~~~~--~~~~~~~l----~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~  136 (187)
                      +...|   .|.|+|.+...  .......+    .+..+|.+....... ..+..|+ +.|.|.+.|.+++  .+.|+++|
T Consensus       318 i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~-~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g  395 (457)
T 1hzh_H          318 VLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSR-DELTKNQ-VSLTCLVKGFYPSDIAVEWESNG  395 (457)
T ss_dssp             CCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCG-GGGGSSE-EEEEEEEEEEBSSCCEEEEEETT
T ss_pred             ECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCc-cccCCCc-EEEEEEEEeEECCCCEEEEEECC
Confidence            44556   89999955522  11222223    234667665333221 1233444 9999999997544  89999999


Q ss_pred             eeCCCCcE---E-Ee------CcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        137 NNLPGGEY---S-YS------GNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       137 ~~~~~~~~---~-~~------~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ..+.....   . ..      ...|.+......|.|.|.|.|.|.....
T Consensus       396 ~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~~  444 (457)
T 1hzh_H          396 QPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN  444 (457)
T ss_dssp             EECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             EECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCCCC
Confidence            88753211   0 11      1345555555567999999999976543

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.32  E-value=9e-12  Score=82.62  Aligned_cols=80  Identities=26%  Similarity=0.431  Sum_probs=64.3

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc---EE--Ee--CcEEEEecCCCCCCeEEEEEEecCCCCcce
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---YS--YS--GNSLTVRHTNRHSAGIYLCVANNMVGSSAA  177 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~---~~--~~--~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s  177 (187)
                      +....+.+|+.+.|.|.+.|.|.+.+.|++++..+....   ..  ..  ...|.|.++...|.|.|.|.+.|..|.. .
T Consensus        12 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~   90 (194)
T 2a38_A           12 LQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQA-T   90 (194)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             CCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceE-e
Confidence            445678899999999999999999999999998775442   11  12  3479999999999999999999988876 4


Q ss_pred             eeEEEEEE
Q psy15738        178 ASIALHVL  185 (187)
Q Consensus       178 ~~~~l~v~  185 (187)
                      ..+.|.|.
T Consensus        91 ~~~~l~v~   98 (194)
T 2a38_A           91 STAELLVK   98 (194)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEc
Confidence            66666664

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.32  E-value=2.4e-11  Score=82.37  Aligned_cols=78  Identities=27%  Similarity=0.459  Sum_probs=65.8

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...    ....|.|.++...|+|.|.|.+.|..|...+..+.|.
T Consensus        24 ~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~   99 (218)
T 3k0w_A           24 NPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG----NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLD   99 (218)
T ss_dssp             CCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC----CSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEE
T ss_pred             CCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC----CCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEE
Confidence            344577899999999999999999999999999887654    3478999999999999999999999886545667776


Q ss_pred             EE
Q psy15738        184 VL  185 (187)
Q Consensus       184 v~  185 (187)
                      |.
T Consensus       100 V~  101 (218)
T 3k0w_A          100 VC  101 (218)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.30  E-value=3.8e-11  Score=87.94  Aligned_cols=79  Identities=28%  Similarity=0.527  Sum_probs=65.4

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeC--CeeCCC------CcEEE----eCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRK--NNNLPG------GEYSY----SGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~--~~~~~~------~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      ...+.+|+.+.|.|.+.|.|.|.+.|+++  +..+..      .+...    ..+.|.|.++..+|+|.|.|.|.|..|.
T Consensus         9 ~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   88 (389)
T 2jll_A            9 NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG   88 (389)
T ss_dssp             CEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCE
T ss_pred             ceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCC
Confidence            45678899999999999999999999999  776543      23322    2358999999999999999999999998


Q ss_pred             cceeeEEEEEEe
Q psy15738        175 SAAASIALHVLC  186 (187)
Q Consensus       175 ~~s~~~~l~v~~  186 (187)
                      . +..+.|.|.+
T Consensus        89 ~-~~~~~l~V~~   99 (389)
T 2jll_A           89 H-QKSMYLDIEY   99 (389)
T ss_dssp             E-EEEEEEEEEE
T ss_pred             c-ceEEEEEEEe
Confidence            7 6888888864

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.28  E-value=2.1e-11  Score=85.84  Aligned_cols=108  Identities=14%  Similarity=0.179  Sum_probs=73.8

Q ss_pred             ceeEEEEEecccceeEEeeccc-----------eeeEEEEEEEEc---------------CCeeEEecCCceEEEecCCc
Q psy15738         62 LSYILAMEKEEEERKKKKKRKK-----------RKKKKKKKEKRI---------------PPRIIYVSGAGKVEVKKGYS  115 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~-----------~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~~~g~~  115 (187)
                      .+.|..++.+|+|.|+|.....           .......|.|..               ++.+  ...+. ..+.+|++
T Consensus        80 sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v--~~~p~-~~v~~G~~  156 (280)
T 3fku_X           80 YMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGL--TQPPS-VSKGLRQT  156 (280)
T ss_dssp             EEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSB--BCCSE-EEECTTCC
T ss_pred             EEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEE--EeCCc-EEEecCCC
Confidence            4558889999999999955432           233455777765               2222  23333 67889999


Q ss_pred             EEEEeEecc-CC-CCcEEEEeCC--eeCC-------------CCcEEE--e--CcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        116 VTLECKADG-NP-VPNITWTRKN--NNLP-------------GGEYSY--S--GNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       116 ~~l~C~~~g-~p-~p~~~W~~~~--~~~~-------------~~~~~~--~--~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      +.|.|.+.+ .+ .+.+.|++..  ..+.             ..+...  .  ...|.|.++..+|+|.|.|.+.|..
T Consensus       157 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          157 ATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             EEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             EEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            999999988 44 4789999832  2111             112211  1  1359999999999999999999876

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.28  E-value=1.7e-11  Score=86.98  Aligned_cols=88  Identities=25%  Similarity=0.466  Sum_probs=69.6

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC--cEEE---eC--cEEEEecCCCCCCeEEEEEE
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG--EYSY---SG--NSLTVRHTNRHSAGIYLCVA  168 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~~~---~~--~~l~i~~~~~~d~g~y~C~~  168 (187)
                      +|.+.  ..+....+.+|+.+.|.|.+.|.|.+.+.|++++..+...  +...   ..  ..|.|.++..+|.|.|.|.|
T Consensus         4 ~P~~~--~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a   81 (305)
T 2nzi_A            4 APHFK--EELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA   81 (305)
T ss_dssp             CCEEE--ECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEE
T ss_pred             CCeee--ecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEE
Confidence            56664  3344578899999999999999999999999999887543  2221   12  28999999999999999999


Q ss_pred             ecCCCCcceeeEEEEEEe
Q psy15738        169 NNMVGSSAAASIALHVLC  186 (187)
Q Consensus       169 ~n~~g~~~s~~~~l~v~~  186 (187)
                      .|..|.. +..+.|.|.+
T Consensus        82 ~n~~g~~-~~~~~l~V~~   98 (305)
T 2nzi_A           82 TNQGGSV-SGTASLEVEV   98 (305)
T ss_dssp             EETTEEE-EEEEEEEECE
T ss_pred             EcCCCCc-cceEEEEEec
Confidence            9998876 5777777743

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.28  E-value=2e-11  Score=91.99  Aligned_cols=110  Identities=15%  Similarity=0.157  Sum_probs=73.0

Q ss_pred             eEEEEEecccceeEEeeccceee--EEEEEE---EEcCCeeEEecCCceEEEecCCcEEEEeEeccCCC--CcEEEEeCC
Q psy15738         64 YILAMEKEEEERKKKKKRKKRKK--KKKKKE---KRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPV--PNITWTRKN  136 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~~~~~~--~~~~l~---v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~  136 (187)
                      .|..+...|.|.|+|.+......  ....|.   +..+|.+..... ....+..|+.+.|.|.+.|.++  +.+.|+++|
T Consensus       312 ~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~-~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g  390 (475)
T 1iga_A          312 PGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPP-PSEELALNELVTLTCLARGFSPKDVLVRWLQGS  390 (475)
T ss_pred             EEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECC-ChHHhccCCceEEEEEEeeeECCCCEEEEEECC
Confidence            36778888999999955533332  233342   256676653332 2223567899999999998643  489999999


Q ss_pred             eeCCCCcEE------E---------eCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        137 NNLPGGEYS------Y---------SGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       137 ~~~~~~~~~------~---------~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      ..+....+.      .         ..+.|.+......|.|.|.|.|.|....
T Consensus       391 ~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          391 QELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             EECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence            887544210      1         1134666666677899999999997643

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.27  E-value=4.2e-12  Score=72.17  Aligned_cols=59  Identities=22%  Similarity=0.470  Sum_probs=49.6

Q ss_pred             ceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecC-CCCCCeEEEEEEec
Q psy15738        106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHT-NRHSAGIYLCVANN  170 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~n  170 (187)
                      +...+..|+++.|.|.+.|.|+  |.|+++|..+...    .++.|.|.++ ..+|+|.|.|.|.+
T Consensus         7 ~~~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~~~----~~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E            7 EYKVSISGTSVELTCPLDSDEN--LKWEKNGQELPQK----HDKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             CCEEEEETTEEEEECSSCCCSS--CEEEETTEECTTC----CSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             ceeEEEcCCeEEEEEECCCCCc--EEEEECCEECcCC----CCCEEEECccCccCcCEEEEEEEcc
Confidence            3456778999999999999873  9999999988654    4578999996 67999999999976

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.27  E-value=1.2e-11  Score=86.11  Aligned_cols=122  Identities=11%  Similarity=0.128  Sum_probs=63.8

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEEeeccce---------------eeEEEEEEEEc----CCeeEEecCCceE
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKKKKRKKR---------------KKKKKKKEKRI----PPRIIYVSGAGKV  108 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~~~---------------~~~~~~l~v~~----~p~~~~~~~~~~~  108 (187)
                      .++.+.... .....+.|..++.+|.|.|.|......               ......|.|..    +|.+.. ..+ ..
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~-~~p-~~  143 (257)
T 3bn9_D           66 GRFTISRDNSKNTLYLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFP-LAP-SS  143 (257)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECC-CCC---
T ss_pred             CceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEE-ecC-cc
Confidence            455544321 122345588999999999999543321               12345788864    344321 111 22


Q ss_pred             EEecCCcEEEEeEeccC-CCC-cEEEEeCCeeCCCC---------cEEEeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        109 EVKKGYSVTLECKADGN-PVP-NITWTRKNNNLPGG---------EYSYSGNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~-p~p-~~~W~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      .+..|+.+.|.|.+.|. |.| .+.|++++..+...         ......+.|.|.++...| |.|+|.+.|...
T Consensus       144 ~~~~g~~v~L~C~~~g~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~  218 (257)
T 3bn9_D          144 KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  218 (257)
T ss_dssp             ---------CCCEEEEEBSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGG
T ss_pred             cccCCCcEEEEEEEeeEECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCC
Confidence            35678999999999986 766 89999998753211         001112456777777667 999999999654

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.26  E-value=3.3e-11  Score=80.29  Aligned_cols=76  Identities=18%  Similarity=0.279  Sum_probs=60.1

Q ss_pred             EEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE----EeCcEEEEecCCCCCCeEEEEEEecCCC-CcceeeEEEE
Q psy15738        109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS----YSGNSLTVRHTNRHSAGIYLCVANNMVG-SSAAASIALH  183 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~n~~g-~~~s~~~~l~  183 (187)
                      .+.+|+.+.|.|.+.+ +.+.+.|++++..+......    .....|.|.++..+|+|.|.|.+.|..| ...+..+.|.
T Consensus        15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~   93 (196)
T 3p2t_A           15 VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELV   93 (196)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEE
T ss_pred             cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEE
Confidence            6789999999999988 77899999999876542211    1236799999999999999999999987 2335667776


Q ss_pred             EE
Q psy15738        184 VL  185 (187)
Q Consensus       184 v~  185 (187)
                      |.
T Consensus        94 V~   95 (196)
T 3p2t_A           94 MT   95 (196)
T ss_dssp             EE
T ss_pred             ec
Confidence            64

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.26  E-value=4.9e-11  Score=71.85  Aligned_cols=83  Identities=24%  Similarity=0.452  Sum_probs=60.5

Q ss_pred             cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEE-eCc---EEEEecCCCCCCeEEEEEEe
Q psy15738         95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSY-SGN---SLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus        95 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~-~~~---~l~i~~~~~~d~g~y~C~~~  169 (187)
                      .+|.+.  ..+....+.+|+.+.|.|.+.+.  |.+.|++++..+... ++.. ..+   .|.|.++..+|+|.|.|.+.
T Consensus         7 ~pp~~~--~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   82 (108)
T 2dm7_A            7 GPARFT--QDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCG   82 (108)
T ss_dssp             CCCCBC--SCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEET
T ss_pred             CCCeee--ecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEc
Confidence            455553  33455678999999999999765  689999999877543 2221 222   59999999999999999995


Q ss_pred             cCCCCcceeeEEEEEEe
Q psy15738        170 NMVGSSAAASIALHVLC  186 (187)
Q Consensus       170 n~~g~~~s~~~~l~v~~  186 (187)
                      |    . +..+.|.|..
T Consensus        83 n----~-~~~~~l~V~~   94 (108)
T 2dm7_A           83 Q----E-RTSATLTVRA   94 (108)
T ss_dssp             T----E-EEEEECEEEC
T ss_pred             C----C-EEEEEEEEec
Confidence            4    3 4566666653

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=4.1e-11  Score=71.42  Aligned_cols=74  Identities=27%  Similarity=0.492  Sum_probs=58.0

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE--eC--cEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY--SG--NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA  181 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~--~~--~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~  181 (187)
                      ...+.+|+.+.|.|.+. .|.+.+.|++++..+.... ...  ..  ..|.|.++...|+|.|.|.+.|    . +..+.
T Consensus        20 ~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~----~-~~~~~   93 (102)
T 2eo1_A           20 EVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG----Q-QLSFR   93 (102)
T ss_dssp             EEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCSSEEEEEETTEEEEEETTCCTTTCSCEEEEETT----E-ECCEE
T ss_pred             cEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcCC----C-cEEEE
Confidence            45788999999999998 7889999999998875442 222  22  4799999999999999999854    3 35667


Q ss_pred             EEEEe
Q psy15738        182 LHVLC  186 (187)
Q Consensus       182 l~v~~  186 (187)
                      |.|..
T Consensus        94 l~V~~   98 (102)
T 2eo1_A           94 LQVAG   98 (102)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            77754

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.25  E-value=5.1e-11  Score=78.66  Aligned_cols=82  Identities=18%  Similarity=0.145  Sum_probs=62.4

Q ss_pred             cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738         95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus        95 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      .+|.+.....   ..+.+|+.+.|.|.+.+ |.+.+.|++++..     .......|.|.++...|+|.|.|.+.|..|.
T Consensus         7 ~~P~i~~~p~---~~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~-----~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   77 (184)
T 2gi7_A            7 PKPSLQALPS---SLVPLEKPVTLRCQGPP-GVDLYRLEKLSSS-----RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLW   77 (184)
T ss_dssp             CCCEEEEESC---SEEETTCCEEEEEECST-TCSEEEEEETTTC-----CEESSSEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCeEEeCCC---ccccCCCcEEEEEeCCC-CCCEEEEEECCcc-----ccCcccEEEECcCChhhCceEEEEEEcCCCc
Confidence            4555543322   26789999999999987 7789999999865     2235678999999999999999999998763


Q ss_pred             -cceeeEEEEEE
Q psy15738        175 -SAAASIALHVL  185 (187)
Q Consensus       175 -~~s~~~~l~v~  185 (187)
                       ..+..+.|.|.
T Consensus        78 ~~~s~~~~l~V~   89 (184)
T 2gi7_A           78 SLPSDQLELVAT   89 (184)
T ss_dssp             BCCCCCEEEEEE
T ss_pred             cCCCCCEEEEec
Confidence             22456666663

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.24  E-value=4.5e-10  Score=73.96  Aligned_cols=105  Identities=15%  Similarity=0.187  Sum_probs=72.2

Q ss_pred             EEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccC-CCC--cEEEEeCCeeC
Q psy15738         65 ILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGN-PVP--NITWTRKNNNL  139 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p--~~~W~~~~~~~  139 (187)
                      +..|.  +.|.|.|..  .+...+..+.|+|+.+|....+... ...+.+|+.++|.|.+.|. |.+  .+.|++++..+
T Consensus        54 l~~vs--~~g~y~C~~~c~~~~~~~~~~l~V~~~P~~v~i~~~-~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l  130 (185)
T 1iam_A           54 LSNVQ--EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPL-PSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKEL  130 (185)
T ss_dssp             EEEEC--SCBCCEEEEECSSCEEEEECEEEEEBCCSEEEECCC-CSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEE
T ss_pred             EEecC--cCCEEEEEEECCCCceEEEEEEEEeCCCCCCEEccC-CccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEc
Confidence            55665  349999933  3457788999999998887644433 2347899999999999885 443  48999999876


Q ss_pred             CCCcEE--EeCcEEEEecCCCCCCe-EEEEEEecCCC
Q psy15738        140 PGGEYS--YSGNSLTVRHTNRHSAG-IYLCVANNMVG  173 (187)
Q Consensus       140 ~~~~~~--~~~~~l~i~~~~~~d~g-~y~C~~~n~~g  173 (187)
                      ......  ..+.+|.+. +.++|.| .|.|.|.|.++
T Consensus       131 ~~~~~~~~~~~~tl~~~-~~reD~g~~~sC~A~~~l~  166 (185)
T 1iam_A          131 KREPAVGEPAEVTTTVL-VRRDHHGAQFSCRTELDLR  166 (185)
T ss_dssp             EEEECCTTTEEEEEEEE-CCSSCSSCEEEEEEEEECG
T ss_pred             ccccCCCccccEEEEEe-ceeccCCCeEEEEEEecCc
Confidence            431100  011245554 4455555 99999999876

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.24  E-value=1.2e-10  Score=78.18  Aligned_cols=78  Identities=21%  Similarity=0.355  Sum_probs=59.6

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      ..+.+|+.+.|.|.+.|.|.|.+.|++.......+....  ....|.|.++..+|.|.|.|.|.|..|.. +..+.|.|.
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~-~~~~~l~V~   89 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKL-EKGIQVEIY   89 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceE-eeEEEEEEE
Confidence            345589999999999999999999998432211121111  23469999999999999999999998876 678888886


Q ss_pred             e
Q psy15738        186 C  186 (187)
Q Consensus       186 ~  186 (187)
                      .
T Consensus        90 ~   90 (202)
T 1vca_A           90 S   90 (202)
T ss_dssp             B
T ss_pred             e
Confidence            4

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.24  E-value=1.5e-11  Score=84.24  Aligned_cols=130  Identities=9%  Similarity=0.089  Sum_probs=77.2

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEEeecc----------ceeeEEEEEEEE----cCCeeEEecCCceEEEecC
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKKKKRK----------KRKKKKKKKEKR----IPPRIIYVSGAGKVEVKKG  113 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~----------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g  113 (187)
                      .++.+.... .....+.|.+++.+|.|.|.|....          ........|.|.    .+|.+....  ....+..|
T Consensus        70 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~--~~~~~~~g  147 (232)
T 3qhz_H           70 TRLTISKDTSKSQVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLA--PSSKSTSG  147 (232)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEEC--C-------
T ss_pred             CceEEEeccCCCEEEEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEec--ccccccCC
Confidence            455554432 2223455788999999999995542          223344567775    334443121  12344569


Q ss_pred             CcEEEEeEeccCCCC--cEEEEeCCeeCCC---------CcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        114 YSVTLECKADGNPVP--NITWTRKNNNLPG---------GEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       114 ~~~~l~C~~~g~p~p--~~~W~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      +.+.|.|.+.+.+++  .+.|++++..+..         .......+.|.+......| |.|+|.+.|..+.. .....|
T Consensus       148 ~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~-~~~~~l  225 (232)
T 3qhz_H          148 GTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT-KVDKRV  225 (232)
T ss_dssp             CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTE-EEEEEC
T ss_pred             CcEEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCc-cEEEEe
Confidence            999999999886543  4779998853211         1111123568888888888 99999999987655 344444

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.24  E-value=5.1e-11  Score=80.06  Aligned_cols=70  Identities=20%  Similarity=0.321  Sum_probs=58.1

Q ss_pred             EEEecCCcEEEEeEeccCCCCc-EEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPN-ITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      ..+.+|+.+.|.|.+.+.|.+. +.|++++..+....     ..|.|.++..+|+|.|.|.+.|...   +..+.|.|.
T Consensus        17 ~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~-----~~L~i~~v~~~D~G~Y~C~a~n~~~---s~~~~l~V~   87 (204)
T 3sgj_C           17 YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA-----SSYFIDAATVDDSGEYRCQTQLSTL---SDPVQLEVH   87 (204)
T ss_dssp             SEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS-----SEEEESSCCGGGCEEEEEEETTSBC---CCCEEEEEE
T ss_pred             eEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc-----cEEEEecccccCCEEEEEEeCCCcc---cccEEEEEe
Confidence            5688999999999999988775 99999998775542     7899999999999999999998533   456666664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.24  E-value=2.3e-11  Score=91.74  Aligned_cols=80  Identities=34%  Similarity=0.637  Sum_probs=65.9

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC----cEE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceee
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG----EYS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAAS  179 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~----~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~  179 (187)
                      +....+.+|+.+.+.|.+.|.|.|.+.|++++..+...    +.. ...+.|.|.++..+|+|.|.|.|.|..|.. +..
T Consensus       392 ~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~  470 (477)
T 2id5_A          392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGND-SMP  470 (477)
T ss_dssp             CEEEEEETTCCEEECCCEEEESCCEEEEECTTSCBC-------CEECTTSCEEESSCCSTTCEEEEEEEEETTEEE-EEE
T ss_pred             cccEEEeCCCeEEEEEeccccCCCEEEEEECCccccccCCCceEEeCCCCEEEEeeCChHHCEEEEEEEEeCCCcE-EEE
Confidence            34677899999999999999999999999998766421    111 235789999999999999999999999988 688


Q ss_pred             EEEEEE
Q psy15738        180 IALHVL  185 (187)
Q Consensus       180 ~~l~v~  185 (187)
                      +.|.|.
T Consensus       471 ~~l~V~  476 (477)
T 2id5_A          471 AHLHVR  476 (477)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            888874

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.23  E-value=7.6e-11  Score=69.27  Aligned_cols=81  Identities=23%  Similarity=0.332  Sum_probs=61.5

Q ss_pred             CCceEEEecCCcEEEEeEecc-CCCCcEEEEeCCe----eCCCCcE-----EEeC----cEEEEecCCCCCCeEEEEEEe
Q psy15738        104 GAGKVEVKKGYSVTLECKADG-NPVPNITWTRKNN----NLPGGEY-----SYSG----NSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g-~p~p~~~W~~~~~----~~~~~~~-----~~~~----~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      ......+..|+.+.|.|.+.+ .|.|.++|.|-+.    ++.....     ....    ..|.+.++...|+|.|.|.|.
T Consensus        20 R~S~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn   99 (122)
T 1xau_A           20 RNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTN   99 (122)
T ss_dssp             TTEEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEE
T ss_pred             eeccEEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEee
Confidence            344567889999999999965 5799999998653    3322211     1111    378999999999999999999


Q ss_pred             cCCCCcceeeEEEEE
Q psy15738        170 NMVGSSAAASIALHV  184 (187)
Q Consensus       170 n~~g~~~s~~~~l~v  184 (187)
                      |..|...+...+|.|
T Consensus       100 ~~~g~ieSHs~ti~V  114 (122)
T 1xau_A          100 FNSQVINSHSVTIHV  114 (122)
T ss_dssp             ETTEEEECCCEEEEE
T ss_pred             CCCCceeeeEEEEEE
Confidence            999888777777776

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.23  E-value=5.1e-11  Score=86.88  Aligned_cols=78  Identities=19%  Similarity=0.290  Sum_probs=63.9

Q ss_pred             ceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCC-C----cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeE
Q psy15738        106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG-G----EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASI  180 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~-~----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~  180 (187)
                      ....+.+|+.+.|.|.+.| |+|.+.|++++..... .    +.....+.|.|.+++.+|+|.|+|.|.|..|.. +..+
T Consensus       254 ~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~  331 (361)
T 2xot_A          254 SAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNE-TLSV  331 (361)
T ss_dssp             CCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEEETTEEEESSCCTTSCEEEEEEEECSSCEE-EEEE
T ss_pred             cCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEeecCeEEEeecCcccCEEEEEEEecCCCcc-EEEE
Confidence            3467899999999999999 9999999997764321 1    233356789999999999999999999998887 5788


Q ss_pred             EEEEE
Q psy15738        181 ALHVL  185 (187)
Q Consensus       181 ~l~v~  185 (187)
                      .|.|.
T Consensus       332 ~l~V~  336 (361)
T 2xot_A          332 ELKVY  336 (361)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88774

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.23  E-value=2.2e-10  Score=76.09  Aligned_cols=139  Identities=15%  Similarity=0.079  Sum_probs=84.6

Q ss_pred             ceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecC
Q psy15738         27 AIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSG  104 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~  104 (187)
                      +|.+....+...+|...-.     ......+.......+..|. +|.+.|.|..  .+...+.++.|+|+.+|....+..
T Consensus        23 ~Cs~~c~~p~~~~~~t~l~-----~~~~~~g~~~~~~~ls~vs-~d~~~~~C~~~c~~~~~~~~v~l~Vy~~P~~v~i~~   96 (196)
T 3bn3_B           23 NCSTNCPRPERGGLETSLR-----RNGTQRGLRWLARQLVDIR-EPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMP   96 (196)
T ss_dssp             EEEECCSSCSEEEEECSSE-----EEEEEEETTEEEEEEEEEC-SSEECCEEEEEETTEEEEEECEEEEEBCCCCCEECC
T ss_pred             EEeCCCCCCCccEEEEccC-----CeeEccccCceEEEEEEEc-cCCCceEEEEECCCCceEEEEEEEEecCCCcCEEcc
Confidence            4666555555677764310     0111112222223466777 7888898933  356778899999999887653433


Q ss_pred             CceEEEecCCcEEEEeEeccC-CCCc--EEEEeCCeeCCCCcEE--E-----eCcEEEEecCCCCCC-eEEEEEEecCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGN-PVPN--ITWTRKNNNLPGGEYS--Y-----SGNSLTVRHTNRHSA-GIYLCVANNMVG  173 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~-p~p~--~~W~~~~~~~~~~~~~--~-----~~~~l~i~~~~~~d~-g~y~C~~~n~~g  173 (187)
                      .. ..+.+|+.++|.|.+.+. |...  +.|++++..+......  .     ....+.+. +.++|. ..|.|.|.+..+
T Consensus        97 ~~-~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~~~~~~~~~~t~~~~~~-~~r~D~g~~~sC~A~l~l~  174 (196)
T 3bn3_B           97 LP-PWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVL-ARREDHGANFSCRAELDLR  174 (196)
T ss_dssp             CC-SSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECTTSCTTCCCEEEEEEEE-CCGGGTTCEEEEEEEEECG
T ss_pred             CC-ccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccccccccccceeEEEEEe-eeeccCCCeEEEEEEccCC
Confidence            22 236899999999999886 4444  7999999765321100  0     11334444 344555 599999998776

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.23  E-value=4.8e-11  Score=80.55  Aligned_cols=89  Identities=31%  Similarity=0.611  Sum_probs=65.8

Q ss_pred             cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc----E-EEeCcEE----EEecCCCCCCeEEE
Q psy15738         95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE----Y-SYSGNSL----TVRHTNRHSAGIYL  165 (187)
Q Consensus        95 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~----~-~~~~~~l----~i~~~~~~d~g~y~  165 (187)
                      .+|.+.  ..+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....    . ....+.+    .|.++...|+|.|.
T Consensus         8 ~~P~i~--~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~   85 (217)
T 2vr9_A            8 QSPRII--EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYW   85 (217)
T ss_dssp             CCCEEE--ECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEE
T ss_pred             CCCEEe--cCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEE
Confidence            466664  33445778999999999999999999999999998875431    1 1222333    57788999999999


Q ss_pred             EEEecCCCCcceeeEEEEEE
Q psy15738        166 CVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       166 C~~~n~~g~~~s~~~~l~v~  185 (187)
                      |.+.|..|...+..+.|.|.
T Consensus        86 C~~~n~~g~~~~~~~~l~v~  105 (217)
T 2vr9_A           86 CVAKNRVGQAVSRHASLQIA  105 (217)
T ss_dssp             EEEEETTEEEECCCEEEEEC
T ss_pred             EEEecCCCccccccceEEEE
Confidence            99999888664445566554

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.23  E-value=4.1e-11  Score=81.44  Aligned_cols=80  Identities=25%  Similarity=0.421  Sum_probs=65.1

Q ss_pred             ceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-----E-EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceee
Q psy15738        106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-----Y-SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAAS  179 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-----~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~  179 (187)
                      ....+.+|+.+.|.|.+.|.|.+.+.|++++..+....     . ......|.|.++...|.|.|.|.+.|..|.. +..
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~  105 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHT  105 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcc-ccc
Confidence            35678899999999999999999999999998775332     1 1134579999999999999999999998877 577


Q ss_pred             EEEEEEe
Q psy15738        180 IALHVLC  186 (187)
Q Consensus       180 ~~l~v~~  186 (187)
                      +.|.|..
T Consensus       106 ~~l~V~~  112 (231)
T 3ojm_B          106 YHLDVVE  112 (231)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEc
Confidence            7777753

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.23  E-value=2.7e-13  Score=101.09  Aligned_cols=66  Identities=11%  Similarity=0.143  Sum_probs=51.1

Q ss_pred             EecCCcEEEEeEeccCC----CCcEEEEeCCeeCCCCcE----------EEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        110 VKKGYSVTLECKADGNP----VPNITWTRKNNNLPGGEY----------SYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~p----~p~~~W~~~~~~~~~~~~----------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +..|+.+.|.|.+.|.+    .+.+.|++++..+.....          ....+.|.|.++...|.|.|.|.|.|..|..
T Consensus       242 v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  321 (434)
T 1igy_B          242 LLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPA  321 (434)
T ss_dssp             HSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSS
T ss_pred             cccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCC
Confidence            67899999999999884    347999999876532210          0123468999999999999999999988864

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.22  E-value=4.1e-10  Score=85.75  Aligned_cols=116  Identities=14%  Similarity=0.197  Sum_probs=69.5

Q ss_pred             EEEEEecccceeEEeecccee---eEEEEEEE----EcCCeeEEecCCceEEEecCCcEE-EEeEeccCCCC--cEEEEe
Q psy15738         65 ILAMEKEEEERKKKKKRKKRK---KKKKKKEK----RIPPRIIYVSGAGKVEVKKGYSVT-LECKADGNPVP--NITWTR  134 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~~~---~~~~~l~v----~~~p~~~~~~~~~~~~~~~g~~~~-l~C~~~g~p~p--~~~W~~  134 (187)
                      |..+...|.|.|+|.+.....   ...+.+..    ..+|.+...... .    .|+.+. |.|.+.|.+++  .+.|++
T Consensus       365 i~~~~~~d~g~y~C~a~n~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~-~----~~~~~~~L~C~~~g~~P~~i~v~W~k  439 (512)
T 1zvo_C          365 LPRSLWNAGTSVTCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASS-D----PPEAASWLLCEVSGFSPPNILLMWLE  439 (512)
T ss_pred             EchHHhcCCCeEEEEEEeCCCCCCceeEEeecCCCCCCCCEEEEEccC-c----CCCCceEEEEEEeeeCCCCcEEEEEE
Confidence            445556688999995543322   12222111    235555433221 1    688899 99999996554  588999


Q ss_pred             CCeeCCCCcEE-----E-eC-------cEEEEecCCCCCCeEEEEEEecCCCCc-ceeeEEEEEE
Q psy15738        135 KNNNLPGGEYS-----Y-SG-------NSLTVRHTNRHSAGIYLCVANNMVGSS-AAASIALHVL  185 (187)
Q Consensus       135 ~~~~~~~~~~~-----~-~~-------~~l~i~~~~~~d~g~y~C~~~n~~g~~-~s~~~~l~v~  185 (187)
                      +|..+....+.     . ..       ..|.+......|.|.|.|.|.|..... ....+.|.|.
T Consensus       440 ~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~  504 (512)
T 1zvo_C          440 DQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVS  504 (512)
T ss_pred             CCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEec
Confidence            99887543211     1 11       235555555666999999999986543 2445555554

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.22  E-value=1e-10  Score=78.40  Aligned_cols=83  Identities=24%  Similarity=0.449  Sum_probs=64.4

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeC-------------CCCcEEEeCcEEEEecCCCCCCeEEEEEEec
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNL-------------PGGEYSYSGNSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~-------------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+             ...+.......|.|.++...|.|.|.|.+.|
T Consensus         7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~~~   86 (212)
T 1f97_A            7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSE   86 (212)
T ss_dssp             SCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEE
T ss_pred             cCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEEEEEEc
Confidence            345677899999999999999899999999987542             1223444558899999999999999999999


Q ss_pred             CCCCcc-eeeEEEEEEe
Q psy15738        171 MVGSSA-AASIALHVLC  186 (187)
Q Consensus       171 ~~g~~~-s~~~~l~v~~  186 (187)
                      ..|... +..+.|.|.+
T Consensus        87 ~~g~~~~~~~~~l~V~~  103 (212)
T 1f97_A           87 EGGQNYGEVSIHLTVLV  103 (212)
T ss_dssp             TTSSSEEEEEEEEEEEB
T ss_pred             cCCCcccEEEEEEEEEc
Confidence            877321 4566776654

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.21  E-value=1.1e-10  Score=78.45  Aligned_cols=77  Identities=23%  Similarity=0.330  Sum_probs=61.4

Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      ..+..|+++.|.|.+ +.|.|  .|.|++.+..+...........|.|.+++.+|.|.|.|.+.|..+.. +..+.|.|+
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~-~~~~~ltV~   94 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTF-QHTVQLLVY   94 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeecccccCcEEecCCccEEEECccCcccCceEEEEEEeCCCce-EEEEEEEEE
Confidence            578899999999999 88888  99999866554211112234679999999999999999999988776 578888886


Q ss_pred             e
Q psy15738        186 C  186 (187)
Q Consensus       186 ~  186 (187)
                      .
T Consensus        95 ~   95 (210)
T 1gsm_A           95 A   95 (210)
T ss_dssp             B
T ss_pred             e
Confidence            5

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.20  E-value=9.9e-11  Score=90.17  Aligned_cols=87  Identities=25%  Similarity=0.423  Sum_probs=69.8

Q ss_pred             cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE----eCcEEEEecCCCCCCeEEEEEEe
Q psy15738         95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY----SGNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus        95 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      ..|.+.  ..+....+.+|.++.+.|.+.|.|.|.+.|++++..+..+. +..    ....|.|.++.+.|+|.|+|.|.
T Consensus       481 ~~P~~~--~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~  558 (573)
T 3uto_A          481 AQPRFI--VKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK  558 (573)
T ss_dssp             GSCEEE--ECCCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCCccc--cCCCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEE
Confidence            345553  33445678899999999999999999999999999886553 222    23479999999999999999999


Q ss_pred             cCCCCcceeeEEEEE
Q psy15738        170 NMVGSSAAASIALHV  184 (187)
Q Consensus       170 n~~g~~~s~~~~l~v  184 (187)
                      |..|.. +..+.|.|
T Consensus       559 N~~G~~-~~~v~l~V  572 (573)
T 3uto_A          559 NSYGTK-EEIVFLNV  572 (573)
T ss_dssp             ETTEEE-EEEEEEEE
T ss_pred             eCCCcE-EEEEEEEE
Confidence            999988 57777766

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.20  E-value=1.7e-10  Score=69.86  Aligned_cols=78  Identities=18%  Similarity=0.173  Sum_probs=57.9

Q ss_pred             EEecCCcEEEEeEeccCCCCcEEEEeCCeeCC--------------------CCcEE-EeCcEEEEecCCCCCCeEEEEE
Q psy15738        109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLP--------------------GGEYS-YSGNSLTVRHTNRHSAGIYLCV  167 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~--------------------~~~~~-~~~~~l~i~~~~~~d~g~y~C~  167 (187)
                      .+.+|+++.|.|.....+.+.+.|+++.....                    .++.. ..+++|.|.+++.+|+|.|+|.
T Consensus        11 ~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~nvt~~D~G~Ytc~   90 (111)
T 2qsq_A           11 NVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDAGFYTLH   90 (111)
T ss_dssp             EEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEEECSCCGGGCEEEEEE
T ss_pred             eeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEEEccCcccCCeEEEEE
Confidence            57899999999985333345699999763220                    22222 3468899999999999999999


Q ss_pred             EecCCCCcceeeEEEEEEe
Q psy15738        168 ANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       168 ~~n~~g~~~s~~~~l~v~~  186 (187)
                      +.+..+......+.|.|..
T Consensus        91 v~~~~~~~~~~~~~L~V~~  109 (111)
T 2qsq_A           91 VIKSDLVNEEATGQFRVYP  109 (111)
T ss_dssp             EEETTSCCEEEEEEEEEEC
T ss_pred             EEeCCCcEEEEEEEEEEec
Confidence            9998775446788888864

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.20  E-value=9.4e-11  Score=80.32  Aligned_cols=81  Identities=28%  Similarity=0.495  Sum_probs=65.7

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc------EEEeCcEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE------YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAA  178 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~  178 (187)
                      +....+.+|+.+.|.|.+.|.|.+.+.|++++..+....      .......|.|.++...|.|.|.|.+.|..|.. +.
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~-~~  100 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-RQ  100 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EE
T ss_pred             CcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCce-EE
Confidence            335778899999999999999999999999998775332      11234689999999999999999999988877 56


Q ss_pred             eEEEEEEe
Q psy15738        179 SIALHVLC  186 (187)
Q Consensus       179 ~~~l~v~~  186 (187)
                      .+.|.|..
T Consensus       101 ~~~l~V~~  108 (241)
T 3grw_A          101 TYTLDVLE  108 (241)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence            77777753

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.20  E-value=1.1e-10  Score=77.23  Aligned_cols=81  Identities=25%  Similarity=0.486  Sum_probs=62.6

Q ss_pred             CceEEEecCCcEEEEeEeccCC-CCcEEEEe-CCeeCCCC--cEEE-----eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP-VPNITWTR-KNNNLPGG--EYSY-----SGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p-~p~~~W~~-~~~~~~~~--~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +....+.+|+.+.|.|.+.+.| .+.+.|++ ++..+...  +...     ....|.|.++...|+|.|.|.+.|..+..
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~   88 (191)
T 1epf_A            9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ   88 (191)
T ss_dssp             SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred             CCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcc
Confidence            3346788999999999999977 78999999 77765422  2221     23689999999999999999999998544


Q ss_pred             ceeeEEEEEE
Q psy15738        176 AAASIALHVL  185 (187)
Q Consensus       176 ~s~~~~l~v~  185 (187)
                      .+..+.|.|.
T Consensus        89 ~~~~~~l~v~   98 (191)
T 1epf_A           89 SEATVNVKIF   98 (191)
T ss_dssp             EEEEEEEEEE
T ss_pred             eEEEEEEEee
Confidence            4667777764

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.19  E-value=6.6e-11  Score=86.77  Aligned_cols=108  Identities=13%  Similarity=0.139  Sum_probs=68.7

Q ss_pred             EEEEEecccceeEEeecccee----eEEEEE--EEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCC--CcEEEEeCC
Q psy15738         65 ILAMEKEEEERKKKKKRKKRK----KKKKKK--EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPV--PNITWTRKN  136 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~~~----~~~~~l--~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~  136 (187)
                      |..++.+|.|.|+|.+.....    ..++.+  .+..+|.+......  .....|+.+.|.|.+.|.++  +.|.|+++|
T Consensus       237 I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~--~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g  314 (376)
T 2aty_A          237 IMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPP--KEQMAKDKVSLTCMITDFFPEDITVEWQWNG  314 (376)
T ss_pred             echHhccCCCEEEEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCCC--HHHhcCCceEEEEEEEEeECCCcEEEEEECC
Confidence            556677799999995543322    122222  44567766533322  22345889999999998643  479999999


Q ss_pred             eeCCCCcE---E-------EeCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        137 NNLPGGEY---S-------YSGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       137 ~~~~~~~~---~-------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      ..+.....   .       .....|.+......|.|.|.|.|.|..-.
T Consensus       315 ~~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l~  362 (376)
T 2aty_A          315 QPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  362 (376)
T ss_pred             EECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCCC
Confidence            87643211   0       11234666666667789999999997643

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.19  E-value=2.4e-11  Score=81.65  Aligned_cols=78  Identities=22%  Similarity=0.216  Sum_probs=59.4

Q ss_pred             EEEecCCcEEEEeE---eccCCCCcEEEEeCCeeCCC------------------CcEEE----eCcEEEEecCCCCCCe
Q psy15738        108 VEVKKGYSVTLECK---ADGNPVPNITWTRKNNNLPG------------------GEYSY----SGNSLTVRHTNRHSAG  162 (187)
Q Consensus       108 ~~~~~g~~~~l~C~---~~g~p~p~~~W~~~~~~~~~------------------~~~~~----~~~~l~i~~~~~~d~g  162 (187)
                      ..+..|+.+.|.|.   +.+.|.|.+.|+++|.....                  .....    ....|.|.++..+|+|
T Consensus         3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   82 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG   82 (203)
T ss_dssp             CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCe
Confidence            46788999999995   56789999999998743211                  00110    1246999999999999


Q ss_pred             EEEEEEecCCCCcceeeEEEEEEe
Q psy15738        163 IYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       163 ~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .|.|.|.|..|.. +..+.|.|..
T Consensus        83 ~Y~C~a~n~~g~~-~~~~~l~V~~  105 (203)
T 4fa8_A           83 NYLCRMKLGETEV-TKQEHLSVVK  105 (203)
T ss_dssp             EEEEEEEETTEEE-EEEEEEEEEE
T ss_pred             EEEEEEEcCCCcE-EEEEEEEecC
Confidence            9999999999887 5777887753

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.18  E-value=1.7e-10  Score=76.05  Aligned_cols=80  Identities=21%  Similarity=0.482  Sum_probs=57.6

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCC---CcEE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcc-eee
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG---GEYS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSA-AAS  179 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~---~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-s~~  179 (187)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+..   .+.. ...+.|.|.++...|.|.|.|.+.|..+... +..
T Consensus         9 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   88 (189)
T 2v5t_A            9 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRD   88 (189)
T ss_dssp             CSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEE
T ss_pred             CCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEE
Confidence            4456789999999999999999999999999876542   2222 2356799999999999999999999875432 234


Q ss_pred             EEEEE
Q psy15738        180 IALHV  184 (187)
Q Consensus       180 ~~l~v  184 (187)
                      +.+.|
T Consensus        89 ~~l~v   93 (189)
T 2v5t_A           89 IIVIV   93 (189)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            44444

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.18  E-value=1e-10  Score=77.95  Aligned_cols=87  Identities=18%  Similarity=0.282  Sum_probs=63.2

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE----EEeCcEEEEecCCCCCCeEEEEEEecC
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY----SYSGNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      +|.+....  . ..+.+|+.+.|.|.+.+.|. .+.|++++..+.....    ......|.|.+++.+|+|.|.|.+.|.
T Consensus         5 ~P~i~~~p--~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 2d3v_A            5 KATLWAEP--G-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSP   80 (196)
T ss_dssp             BCEEEEES--C-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEeCC--C-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCC
Confidence            45554332  2 26789999999999988765 9999999986643211    012467999999999999999999998


Q ss_pred             CCCc-ceeeEEEEEEe
Q psy15738        172 VGSS-AAASIALHVLC  186 (187)
Q Consensus       172 ~g~~-~s~~~~l~v~~  186 (187)
                      .|.. .+..+.|.|..
T Consensus        81 ~g~~~~s~~~~l~V~~   96 (196)
T 2d3v_A           81 AGWSEPSDPLELVVTG   96 (196)
T ss_dssp             TEECBCCCCEEEEEEC
T ss_pred             CCcCCcCccEEEEecC
Confidence            7643 24567777653

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.17  E-value=7.5e-11  Score=71.17  Aligned_cols=74  Identities=14%  Similarity=0.255  Sum_probs=53.5

Q ss_pred             EEecCCcEEEEeEeccCCCC-----cEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCC--cceeeEE
Q psy15738        109 EVKKGYSVTLECKADGNPVP-----NITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGS--SAAASIA  181 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p-----~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~--~~s~~~~  181 (187)
                      .+.+|+.++|.|.+.+.+..     .+.|++++..+..   ......|.|.+++..|+|.|.|.+.+..+.  ..|..+.
T Consensus        18 ~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~---~~~~~~l~i~~v~~~dsG~Y~C~~~~~~~~~~~~S~~l~   94 (108)
T 4hwn_A           18 EPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQS---RGLSSEFQIPTASEDHSGSYWCEAATEDNQVWKQSPQLE   94 (108)
T ss_dssp             SCBTTCCEEEEEEC---------CCEEEEEETTEEEEE---EESCCEEEESSCCGGGCEEEEEEEECTTSSSEEECCCEE
T ss_pred             cCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccC---CCcccEEEeCccCcccCeEEEEEEEeCCCceeccCCCEE
Confidence            46789999999998765544     3999999986532   224578999999999999999999997653  2356777


Q ss_pred             EEEE
Q psy15738        182 LHVL  185 (187)
Q Consensus       182 l~v~  185 (187)
                      |.|.
T Consensus        95 L~V~   98 (108)
T 4hwn_A           95 IRVQ   98 (108)
T ss_dssp             ECCB
T ss_pred             EEEE
Confidence            7664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.17  E-value=7.6e-11  Score=88.11  Aligned_cols=87  Identities=25%  Similarity=0.576  Sum_probs=66.0

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCee-CCCC----cEE-EeCcEEEEecCCCCCCeEEEEEEe
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNN-LPGG----EYS-YSGNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~-~~~~----~~~-~~~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      +|.+.  ..+....+.+|+.+.|.|.+ +.|.|.+.|++++.. ....    +.. ...++|.|.+++.+|+|.|.|.|.
T Consensus       341 ~P~i~--~~~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  417 (440)
T 3zyj_A          341 APVIV--EPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVS  417 (440)
T ss_dssp             CCCEE--ECCCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEECTTCCEEESSCCSTTCEEEEEEEE
T ss_pred             CCccc--ccccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEEEccCCeEEEccCChhhCEEEEEEEE
Confidence            45553  23456788999999999999 568899999995543 2211    222 235789999999999999999999


Q ss_pred             cCCCCcceeeEEEEEEe
Q psy15738        170 NMVGSSAAASIALHVLC  186 (187)
Q Consensus       170 n~~g~~~s~~~~l~v~~  186 (187)
                      |..|.. +.++.+.|.+
T Consensus       418 N~~G~~-~~~~~~~v~~  433 (440)
T 3zyj_A          418 NSVGNT-TASATLNVTG  433 (440)
T ss_dssp             CSSCEE-EEEEEEEEC-
T ss_pred             cCCCcE-EEEEEEEEec
Confidence            999988 5888888754

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.17  E-value=1.6e-10  Score=77.16  Aligned_cols=80  Identities=16%  Similarity=0.206  Sum_probs=59.6

Q ss_pred             ceEEEecCCcEEEEeEeccCCC-----CcEEEEeCCeeC-CC-CcEEE-------eCcEEEEecCCCCCCeEEEEEEecC
Q psy15738        106 GKVEVKKGYSVTLECKADGNPV-----PNITWTRKNNNL-PG-GEYSY-------SGNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~-----p~~~W~~~~~~~-~~-~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      ....+.+|+.+.|.|.+.+.|.     +.+.|++++... .. .+...       ....|.|.++..+|.|.|.|.+.|.
T Consensus        10 ~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   89 (202)
T 3bp6_B           10 EVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICG   89 (202)
T ss_dssp             SEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             cCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeC
Confidence            3467889999999999999886     789999943332 21 12221       1257999999999999999999999


Q ss_pred             CCCcceeeEEEEEEe
Q psy15738        172 VGSSAAASIALHVLC  186 (187)
Q Consensus       172 ~g~~~s~~~~l~v~~  186 (187)
                      .+.. +..+.|.|..
T Consensus        90 ~~~~-~~~~~l~V~~  103 (202)
T 3bp6_B           90 AAWD-YKYLTVKVKA  103 (202)
T ss_dssp             TEEE-EEEEEEEEEB
T ss_pred             CCcc-eEEEEEEecC
Confidence            8866 5777777753

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.16  E-value=1.4e-10  Score=79.84  Aligned_cols=104  Identities=15%  Similarity=0.208  Sum_probs=61.6

Q ss_pred             EEecccceeEEeecccee----eEEEEE--EEEcCCeeEEecCCceEEEecCCcEEEEeEeccC-CCC-cEEEEeCCeeC
Q psy15738         68 MEKEEEERKKKKKRKKRK----KKKKKK--EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGN-PVP-NITWTRKNNNL  139 (187)
Q Consensus        68 v~~~d~g~y~c~~~~~~~----~~~~~l--~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~~~W~~~~~~~  139 (187)
                      ....|.|.|+|.......    ...+.+  .+..+|.+.......  ....|+.+.|.|.+.|. |.+ .+.|+++|..+
T Consensus        96 ~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~--~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~  173 (240)
T 4acp_A           96 QDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSR--DELTKNQVSLTCLVKGFYPSDIAVEWESNGQPE  173 (240)
T ss_dssp             HHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCG--GGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             hhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCCh--HHhcCCceEEEEEEeEEeCCCcEEEEEECCEEC
Confidence            333467899995554332    222221  233566665333221  11248899999999995 543 79999999876


Q ss_pred             CCCcE----------EEeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        140 PGGEY----------SYSGNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       140 ~~~~~----------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      .....          ....+.|.+......+.+.|.|.+.+..-
T Consensus       174 ~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          174 NNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             SSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence            42210          01124556655544568999999998754

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.16  E-value=1.8e-10  Score=70.94  Aligned_cols=81  Identities=26%  Similarity=0.429  Sum_probs=59.4

Q ss_pred             ceEEEecCCcEEEEeEeccCCC----CcEEEEeCCee-------C---------------CCCcEEEe-------CcEEE
Q psy15738        106 GKVEVKKGYSVTLECKADGNPV----PNITWTRKNNN-------L---------------PGGEYSYS-------GNSLT  152 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~----p~~~W~~~~~~-------~---------------~~~~~~~~-------~~~l~  152 (187)
                      ....+..|+++.|.|.+.+.+.    +.+.|++.+..       +               ...+....       ...|.
T Consensus        13 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~   92 (126)
T 1eaj_A           13 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN   92 (126)
T ss_dssp             EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred             ceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeEEEE
Confidence            3467889999999999987654    34999986521       0               01122221       15699


Q ss_pred             EecCCCCCCeEEEEEEecCCCCcceeeEEEEEEeC
Q psy15738        153 VRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK  187 (187)
Q Consensus       153 i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~~  187 (187)
                      |.++..+|+|.|.|.+.|..+.. ...+.|.|..+
T Consensus        93 I~~v~~~D~G~Y~C~v~~~~~~~-~~~~~L~V~~p  126 (126)
T 1eaj_A           93 VTNLQLSDIGTYQCKVKKAPGVA-NKKIHLVVLVK  126 (126)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEC-
T ss_pred             ECcCChHHCeEEEEEEEcCCccC-CcEEEEEEEcC
Confidence            99999999999999999988766 58888988764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.16  E-value=3e-11  Score=90.63  Aligned_cols=80  Identities=24%  Similarity=0.499  Sum_probs=62.2

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCe-eCCCC----cE-EEeCcEEEEecCCCCCCeEEEEEEecCCCCcce
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNN-NLPGG----EY-SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAA  177 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~-~~~~~----~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s  177 (187)
                      .+....+.+|+.+.+.|.+.  |.|.+.|++++. .....    +. ....++|.|.+++.+|+|.|.|.|.|..|.. +
T Consensus       358 ~~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~~~~~~g~L~i~~v~~~D~G~Y~C~a~N~~G~~-~  434 (452)
T 3zyi_A          358 APRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNS-N  434 (452)
T ss_dssp             CCCCEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCCCSSCEECTTSCEECSSCCTTCCEEEEEEEECSSCEE-E
T ss_pred             ccccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCCCCEEECCCCeEEEeecCHHHCEEEEEEEEcCCCcE-E
Confidence            34457788999999999988  899999999543 33221    11 2245789999999999999999999999988 5


Q ss_pred             eeEEEEEEe
Q psy15738        178 ASIALHVLC  186 (187)
Q Consensus       178 ~~~~l~v~~  186 (187)
                      .++.|.|..
T Consensus       435 ~~~~l~v~~  443 (452)
T 3zyi_A          435 ASAYLNVST  443 (452)
T ss_dssp             EEEEEEC--
T ss_pred             EEEEEEEEc
Confidence            888888753

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=99.16  E-value=3.8e-11  Score=72.10  Aligned_cols=77  Identities=19%  Similarity=0.176  Sum_probs=56.3

Q ss_pred             EEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE--EeCcEEEEecCCCCCCeEEEEEEecCC---CCcceeeEEEE
Q psy15738        109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS--YSGNSLTVRHTNRHSAGIYLCVANNMV---GSSAAASIALH  183 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~---g~~~s~~~~l~  183 (187)
                      .+.+|+.++|.|.+.+. .+.+.|++++.........  .....|.|.+++.+|+|.|.|.+.|..   .+..|..+.|.
T Consensus        15 ~v~~G~~VtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~~~~~~s~~Sdpl~L~   93 (105)
T 2vsd_A           15 GVSLGDTVTLRCHLPRM-AAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQCRYQVSEPLWTSNQSDPVELV   93 (105)
T ss_dssp             SCCTTCEEEEEEECCSS-CEEEEEEETTEEEEEEEECTTCSEEEEEEECCSGGGCEEEEEEEEEETTEEECCCCCCEEEC
T ss_pred             CcCcCCCEEEEEEcCCC-CcEEEEEECCccceeeeccCCCCEEEEEECCCCHHHCeEEEEEEEcCCCCcccCCCCCEEEE
Confidence            57889999999998765 4678999998754211100  123579999999999999999999864   23446778887


Q ss_pred             EEe
Q psy15738        184 VLC  186 (187)
Q Consensus       184 v~~  186 (187)
                      |.+
T Consensus        94 V~~   96 (105)
T 2vsd_A           94 LTI   96 (105)
T ss_dssp             CC-
T ss_pred             EEE
Confidence            643

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.15  E-value=9e-11  Score=77.68  Aligned_cols=67  Identities=21%  Similarity=0.439  Sum_probs=54.3

Q ss_pred             EEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEec-CCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRH-TNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      ....|+.+.|.|.+.+ | +.+.|+++|..+...    .++.|.|.+ +..+|+|.|.|.|.|..|.. +..+.+
T Consensus        10 v~~~G~~v~L~C~~~~-~-~~i~W~k~g~~l~~~----~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~-~~~~~~   77 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-D-ENLKWEKNGQELPQK----HDKHLVLQDFSEVEDSGYYVCYTPASNKNT-YLYLKA   77 (186)
T ss_dssp             EEEETTEEEEECSSCC-C-TTCEEEETTEEECSC----CCSEEEEESCCTTTSCEEEEEECSSCCCCC-CEEECC
T ss_pred             EEeCCcEEEEEEeCCC-C-CceEEEECCEECCCC----CCCEEEECCCCccccCEEEEEEEEeCCCcE-EEEEEE
Confidence            4577999999999987 4 359999999887653    346899999 99999999999999998874 344443

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.15  E-value=3.2e-10  Score=73.56  Aligned_cols=73  Identities=25%  Similarity=0.396  Sum_probs=57.3

Q ss_pred             CceEEEecCCcEEEEeEeccCC-CCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP-VPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p-~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      +....+.+|+.+.|.|.+.+.| .+.+.|++++..+...     ...+.+.++...|.|.|.|.+.|...   +..+.|.
T Consensus        11 p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~-----~~~~~~~~~~~~d~G~Y~C~~~~~~~---s~~~~l~   82 (170)
T 3ry4_A           11 PPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH-----TQPSYRFKANNNDSGEYTCQTGQTSL---SDPVHLT   82 (170)
T ss_dssp             SCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC-----CSSEEEEECCGGGCEEEEEEETTSBC---CCCEEEE
T ss_pred             CCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC-----ccceEEEecccccCeEEEEEEeCCCc---eEeEEEE
Confidence            3334678999999999999987 5789999999887654     25567889999999999999998544   3455666


Q ss_pred             EE
Q psy15738        184 VL  185 (187)
Q Consensus       184 v~  185 (187)
                      |.
T Consensus        83 v~   84 (170)
T 3ry4_A           83 VL   84 (170)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.15  E-value=1.7e-10  Score=75.43  Aligned_cols=71  Identities=23%  Similarity=0.340  Sum_probs=57.5

Q ss_pred             eEEEecCCcEEEEeEeccCCCCc-EEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPN-ITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      ...+.+|+.+.|.|.+.+.|.+. +.|++++..+..     ....|.|.+++.+|+|.|.|.+.|..+   +..+.|.|.
T Consensus        16 ~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~n~~~---s~~~~l~V~   87 (175)
T 1fnl_A           16 WYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS-----QASSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLEVH   87 (175)
T ss_dssp             CSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES-----SCSEEEESSCCGGGCEEEEEECSSSCC---CCCEEEEEE
T ss_pred             ceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC-----CceEEEEeCCCcccCEEEEEEeeCCcc---cccEEEEEe
Confidence            34688999999999999988776 889999976543     347899999999999999999998655   345556554

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.13  E-value=2.2e-10  Score=76.86  Aligned_cols=88  Identities=32%  Similarity=0.648  Sum_probs=63.3

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc------E-EEeCcE-----EEEecCCCCCCeE
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE------Y-SYSGNS-----LTVRHTNRHSAGI  163 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~------~-~~~~~~-----l~i~~~~~~d~g~  163 (187)
                      +|.+.  ..+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....      . ....+.     |.+.++...|.|.
T Consensus         9 pp~i~--~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   86 (212)
T 2v9r_A            9 PPRIV--EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (212)
T ss_dssp             EEEEE--ECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE
T ss_pred             Cccee--cCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE
Confidence            45553  33445678899999999999999999999999998764331      1 112233     3345668899999


Q ss_pred             EEEEEecCCCCcceeeEEEEEE
Q psy15738        164 YLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       164 y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      |.|.+.|..|...+..+.|.|.
T Consensus        87 Y~C~~~n~~g~~~~~~~~l~V~  108 (212)
T 2v9r_A           87 YVCVARNYLGEAVSHDASLEVA  108 (212)
T ss_dssp             EEEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEEECCCCceeecceEEEEE
Confidence            9999999887654456666664

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.13  E-value=1.1e-09  Score=65.98  Aligned_cols=68  Identities=19%  Similarity=0.401  Sum_probs=51.5

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--e---C----------CCCcEEEe----CcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--N---L----------PGGEYSYS----GNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~---~----------~~~~~~~~----~~~l~i~~~~~~d~g~y~  165 (187)
                      +....+.+|+++.|.|.+.+.|.+.+.|++...  .   +          ...+....    ...|.|.++..+|+|.|.
T Consensus         8 p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~   87 (108)
T 1jhl_L            8 PSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYI   87 (108)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEE
T ss_pred             CCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHHCEEEE
Confidence            345678899999999999998888999998641  1   0          01222211    247999999999999999


Q ss_pred             EEEecCC
Q psy15738        166 CVANNMV  172 (187)
Q Consensus       166 C~~~n~~  172 (187)
                      |.+.|..
T Consensus        88 C~~~n~~   94 (108)
T 1jhl_L           88 CQQHNEY   94 (108)
T ss_dssp             EEECSSS
T ss_pred             EEEccCC
Confidence            9999864

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.12  E-value=2.4e-10  Score=76.23  Aligned_cols=87  Identities=17%  Similarity=0.271  Sum_probs=63.0

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc----EEEeCcEEEEecCCCCCCeEEEEEEecC
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE----YSYSGNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      +|.+...+  . ..+.+|+.+.|.|.+.+.|. .+.|++++..+....    .......|.|.++...|+|.|.|.+.|.
T Consensus         5 ~P~i~~~p--~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (198)
T 1ugn_A            5 KPTLWAEP--G-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD   80 (198)
T ss_dssp             CCEEEEES--C-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCeEeccC--C-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECC
Confidence            45554332  2 36789999999999998775 799999997652110    0123578999999999999999999998


Q ss_pred             C-CC-cceeeEEEEEEe
Q psy15738        172 V-GS-SAAASIALHVLC  186 (187)
Q Consensus       172 ~-g~-~~s~~~~l~v~~  186 (187)
                      . |. ..+..+.|.|..
T Consensus        81 ~~g~~~~s~~~~l~V~~   97 (198)
T 1ugn_A           81 TAGRSESSDPLELVVTG   97 (198)
T ss_dssp             TTEECCCCCCEEEEEEC
T ss_pred             CCCcccCCccEEEEEcc
Confidence            7 52 225667777653

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.12  E-value=1.2e-10  Score=80.10  Aligned_cols=130  Identities=9%  Similarity=0.109  Sum_probs=77.7

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEEeeccc---------------eeeEEEEEEEE----cCCeeEEecCCceE
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKKKKRKK---------------RKKKKKKKEKR----IPPRIIYVSGAGKV  108 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~~---------------~~~~~~~l~v~----~~p~~~~~~~~~~~  108 (187)
                      .++.+.... .....+.|.+++.+|.|.|.|.....               .......|.|.    .+|.+.....  ..
T Consensus        73 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~--~~  150 (239)
T 3tv3_H           73 SRLTLALDTPKNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAP--SS  150 (239)
T ss_dssp             GGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECC--CC
T ss_pred             CCEEEEEECCCCEEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECC--Ch
Confidence            455554432 22234558889999999999954322               12233466664    2333332221  12


Q ss_pred             EEecCCcEEEEeEeccC-CCC-cEEEEeCCeeCCC---------CcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcce
Q psy15738        109 EVKKGYSVTLECKADGN-PVP-NITWTRKNNNLPG---------GEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAA  177 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~-p~p-~~~W~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s  177 (187)
                      .+..|+.+.|.|.+.+. |.+ .+.|++++..+..         .......+.|.+......| |.|.|.+.|..+.. .
T Consensus       151 ~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~-~  228 (239)
T 3tv3_H          151 KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT-K  228 (239)
T ss_dssp             CC--TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTE-E
T ss_pred             hhccCCcEEEEEEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCc-e
Confidence            34569999999999885 434 4789998863311         1111123568888888888 99999999987654 2


Q ss_pred             eeEEE
Q psy15738        178 ASIAL  182 (187)
Q Consensus       178 ~~~~l  182 (187)
                      ....|
T Consensus       229 ~~~~l  233 (239)
T 3tv3_H          229 VDKRV  233 (239)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            34443

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.12  E-value=1.1e-09  Score=83.39  Aligned_cols=66  Identities=17%  Similarity=0.230  Sum_probs=49.6

Q ss_pred             EecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCc----EE-------EeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        110 VKKGYSVTLECKADGNPVP--NITWTRKNNNLPGGE----YS-------YSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~----~~-------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +..|+.+.|.|.+.|.+++  .+.|+++|..+....    ..       ...+.|.|..+...|.|.|.|.|.|..+..
T Consensus       309 ~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~  387 (512)
T 1zvo_C          309 LWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPP  387 (512)
T ss_pred             hccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCC
Confidence            4579999999999987443  899999998754211    11       112458888888889999999999987654

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.11  E-value=3.2e-10  Score=74.38  Aligned_cols=79  Identities=16%  Similarity=0.343  Sum_probs=58.7

Q ss_pred             EEEecCCcEEEEeEecc--CCCCcEEEEeCCeeC-----------CCCcEEE-eCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        108 VEVKKGYSVTLECKADG--NPVPNITWTRKNNNL-----------PGGEYSY-SGNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g--~p~p~~~W~~~~~~~-----------~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      ....+|+.+.|.|...+  .|.+.+.|++++..+           ...+... .++.|.|.++..+|+|.|.|.+.|..|
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g   85 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   85 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCC
Confidence            45788999999995433  456789999998532           1223322 356799999999999999999999988


Q ss_pred             Cc-ceeeEEEEEEe
Q psy15738        174 SS-AAASIALHVLC  186 (187)
Q Consensus       174 ~~-~s~~~~l~v~~  186 (187)
                      .. .+..+.|.|..
T Consensus        86 ~~~~~~~~~l~V~~   99 (176)
T 1hng_A           86 TRILNKALDLRILE   99 (176)
T ss_dssp             CEEEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEEeC
Confidence            75 24667777653

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.11  E-value=2.1e-10  Score=79.40  Aligned_cols=124  Identities=11%  Similarity=0.110  Sum_probs=73.7

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEEeecc------------------------ceeeEEEEEEEE----cCCee
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKKKKRK------------------------KRKKKKKKKEKR----IPPRI   99 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~------------------------~~~~~~~~l~v~----~~p~~   99 (187)
                      .|+.+.... .....+.|.+++.+|+|.|.|....                        ........|.|.    .+|.+
T Consensus        65 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v  144 (248)
T 3u2s_H           65 GRLSISRDNSKDTLYLQMNSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSV  144 (248)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEE
T ss_pred             CcEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEE
Confidence            455554432 2233455788999999999995432                        122334567775    23333


Q ss_pred             EEecCCceEEEecCCcEEEEeEeccC-C-CCcEEEEeCCeeCCC---------CcEEEeCcEEEEecCCCCCCeEEEEEE
Q psy15738        100 IYVSGAGKVEVKKGYSVTLECKADGN-P-VPNITWTRKNNNLPG---------GEYSYSGNSLTVRHTNRHSAGIYLCVA  168 (187)
Q Consensus       100 ~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~p~~~W~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~g~y~C~~  168 (187)
                      .....  ...+..|+.+.|.|.+.+. | ++.+.|++++.....         .......+.|.+......| |.|.|.+
T Consensus       145 ~~~~~--~~~~~~g~~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v  221 (248)
T 3u2s_H          145 FPLAP--SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNV  221 (248)
T ss_dssp             EEECC--C------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEE
T ss_pred             EEeCC--CccccCCCcEEEEEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEE
Confidence            32221  2234568999999999885 4 346889998853211         1111123568888888778 9999999


Q ss_pred             ecCCCCc
Q psy15738        169 NNMVGSS  175 (187)
Q Consensus       169 ~n~~g~~  175 (187)
                      .|..+..
T Consensus       222 ~h~~~~~  228 (248)
T 3u2s_H          222 NHKPSNT  228 (248)
T ss_dssp             EEGGGTE
T ss_pred             EECCCCc
Confidence            9986554

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.09  E-value=6.9e-10  Score=74.65  Aligned_cols=81  Identities=21%  Similarity=0.388  Sum_probs=58.4

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC----------C---CCcEEEe----CcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL----------P---GGEYSYS----GNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~----------~---~~~~~~~----~~~l~i~~~~~~d~g~y~  165 (187)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++.  .+          .   ..+....    ...|.|.++..+|.|.|.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   87 (213)
T 3d9a_L            8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF   87 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEE
Confidence            445678899999999999999989999998542  11          0   1222211    237999999999999999


Q ss_pred             EEEecCCCCcceeeEEEEEE
Q psy15738        166 CVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       166 C~~~n~~g~~~s~~~~l~v~  185 (187)
                      |.+.|..+........|.|.
T Consensus        88 C~~~~~~~~~~~~~~~l~V~  107 (213)
T 3d9a_L           88 CQQSNSWPYTFGGGTKLEIK  107 (213)
T ss_dssp             EEECSSSSCEECCCEEEEEC
T ss_pred             EeeecCCcceeCCCEEEEEe
Confidence            99999877543334455553

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.09  E-value=2.8e-09  Score=67.06  Aligned_cols=79  Identities=18%  Similarity=0.299  Sum_probs=57.4

Q ss_pred             eEEEecCCcEEEEeEeccCCC---CcEEEEeCCee--C--------------C--CCcEEEe-------CcEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPV---PNITWTRKNNN--L--------------P--GGEYSYS-------GNSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~---p~~~W~~~~~~--~--------------~--~~~~~~~-------~~~l~i~~~~~  158 (187)
                      ...+..|+++.|.|.+.+.+.   +.+.|++.+..  +              .  .++....       ...|.|.++..
T Consensus        15 ~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~   94 (139)
T 1pko_A           15 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   94 (139)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEccCCH
Confidence            467889999999999876543   67999997631  0              0  1222211       24799999999


Q ss_pred             CCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        159 HSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       159 ~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      +|+|.|.|.+.+..|.. +..+.|.|..
T Consensus        95 ~D~G~Y~C~v~~~~~~~-~~~~~L~V~~  121 (139)
T 1pko_A           95 SDEGGYTCFFRDHSYQE-EAAVELKVED  121 (139)
T ss_dssp             GGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             HHCEEEEEEEEcCCCce-EEEEEEEEec
Confidence            99999999999988765 5778888753

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.09  E-value=2.9e-10  Score=76.04  Aligned_cols=83  Identities=20%  Similarity=0.442  Sum_probs=62.2

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeC-------------CCCcEEEeCcEEEEecCCCCCCeEEEEEEec
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNL-------------PGGEYSYSGNSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~-------------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+             ...+.......|.|.++...|.|.|.|.+.|
T Consensus        10 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y~C~~~~   89 (209)
T 1nbq_A           10 SEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE   89 (209)
T ss_dssp             SCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEE
T ss_pred             CCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEEEEEEec
Confidence            344567889999999999999999999999987541             1122333458899999999999999999999


Q ss_pred             CCCCc-ceeeEEEEEEe
Q psy15738        171 MVGSS-AAASIALHVLC  186 (187)
Q Consensus       171 ~~g~~-~s~~~~l~v~~  186 (187)
                      ..|.. .+..+.|.|.+
T Consensus        90 ~~g~~~~~~~~~l~V~~  106 (209)
T 1nbq_A           90 EGGNSYGEVKVKLIVLV  106 (209)
T ss_dssp             TTSSCEECCEEECCEEB
T ss_pred             CCCCccceEEEEEEEec
Confidence            86632 13455666543

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=99.09  E-value=2.5e-09  Score=62.11  Aligned_cols=82  Identities=24%  Similarity=0.306  Sum_probs=65.2

Q ss_pred             CCceEEEecCCcEEEEeEecc-CCCCcEEEEeCC----eeCCCCcEE--EeCc----EEEEecCCCCCCeEEEEEEecCC
Q psy15738        104 GAGKVEVKKGYSVTLECKADG-NPVPNITWTRKN----NNLPGGEYS--YSGN----SLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g-~p~p~~~W~~~~----~~~~~~~~~--~~~~----~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      +.....+..|+.+.|.|.+.+ .+.|.++|-|-+    .+++.....  ...+    .|.+.++-..|+|.|.|.|.+..
T Consensus        17 R~S~hsv~~G~~f~leCpv~yc~~rP~VtWcKln~~~c~~L~~~~q~w~E~~N~s~fvLhf~~V~~sDsGsYRCsAn~~s   96 (120)
T 2aw2_A           17 RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQS   96 (120)
T ss_dssp             TTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             ecccceEecCCeEEEEccEEeccCCCceEEEecCCceEEECccccccceecCCeeEEEEEEeeeeEcCCcceEEEeeCCC
Confidence            344567889999999999998 489999998755    456555432  2334    68899999999999999999999


Q ss_pred             CCcceeeEEEEEE
Q psy15738        173 GSSAAASIALHVL  185 (187)
Q Consensus       173 g~~~s~~~~l~v~  185 (187)
                      |...|.++++.|-
T Consensus        97 g~ieSHsvtI~Vt  109 (120)
T 2aw2_A           97 NLIESHSTTLYVT  109 (120)
T ss_dssp             EEEECCCEEEEEE
T ss_pred             CcEEeeEEEEEEE
Confidence            9888888887763

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.09  E-value=3e-10  Score=74.31  Aligned_cols=80  Identities=20%  Similarity=0.313  Sum_probs=59.3

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCC-cEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP-NITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      +|.+...  +....+.+|+.+.|.|.+.+.|.+ .+.|++++..+...     ...|.|.+++.+|.|.|.|.+.|..+.
T Consensus         4 ~P~i~~~--p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~~~~~~~s   76 (176)
T 1f2q_A            4 KPKVSLN--PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-----NSSLNIVNAKFEDSGEYKCQHQQVNES   76 (176)
T ss_dssp             CCCCEEE--SSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC-----SSEEEECSCCGGGCEEEEEECTTSSCC
T ss_pred             CCEEEcC--CCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC-----ceEEEEeccceecCEEEEEEcCCcccc
Confidence            4444322  333568899999999999998875 69999999877643     478999999999999999999986653


Q ss_pred             cceeeEEEEEE
Q psy15738        175 SAAASIALHVL  185 (187)
Q Consensus       175 ~~s~~~~l~v~  185 (187)
                         ..+.|.|.
T Consensus        77 ---~~~~l~V~   84 (176)
T 1f2q_A           77 ---EPVYLEVF   84 (176)
T ss_dssp             ---CCEEEEEE
T ss_pred             ---ccEEEEEe
Confidence               34555553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.09  E-value=4.4e-12  Score=91.92  Aligned_cols=108  Identities=17%  Similarity=0.214  Sum_probs=76.7

Q ss_pred             ccceeEEeeccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc---EEEeC
Q psy15738         72 EEERKKKKKRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---YSYSG  148 (187)
Q Consensus        72 d~g~y~c~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~---~~~~~  148 (187)
                      +.+.|+|.....  ...+.+.+..+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++++..+....   .....
T Consensus       136 ~~~~~~C~~~~~--l~~l~~~~c~~P~i~~~--~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~  211 (347)
T 2ifg_A          136 PEQKLQCHGQGP--LAHMPNASCGVPTLKVQ--VPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPS  211 (347)
T ss_dssp             GGGCCCCSSSSC--SSCCCCTTCCCCEEEEE--CCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSE
T ss_pred             cccCCCCCCChH--HhcCCcccCCCCceecc--CCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceeccc
Confidence            468899955442  12222333456766533  334567899999999999999999999999986543211   11134


Q ss_pred             cEEEEecCCCCCCe-EEEEEEecCCCCcceeeEEEEE
Q psy15738        149 NSLTVRHTNRHSAG-IYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       149 ~~l~i~~~~~~d~g-~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      +.|.|.++...|.| .|.|.|.|..|.. +..+.|.|
T Consensus       212 ~~L~i~~v~~~D~G~~Y~C~a~n~~g~~-~~~~~l~V  247 (347)
T 2ifg_A          212 LGLTLANVTSDLNRKNVTCWAENDVGRA-EVSVQVNV  247 (347)
T ss_dssp             EEEEEESCCSTTTTCCEEECCEETTEEC-CEEECCCC
T ss_pred             ceEEEeeCChHHCCCeEEEEEEcCCCCE-EEEEEEEE
Confidence            68999999999999 9999999998877 46665554

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=99.07  E-value=1.2e-09  Score=65.66  Aligned_cols=80  Identities=16%  Similarity=0.219  Sum_probs=57.9

Q ss_pred             eEEEecCCcEEEEeEeccCCCC---cEEEEeCCeeC----------C--------CCcEEEe------CcEEEEecCCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVP---NITWTRKNNNL----------P--------GGEYSYS------GNSLTVRHTNRH  159 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p---~~~W~~~~~~~----------~--------~~~~~~~------~~~l~i~~~~~~  159 (187)
                      ...+..|+++.|.|...+.+.+   .+.|++.....          .        ..+....      ...|.|.++..+
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~   82 (109)
T 2oyp_A            3 GYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLD   82 (109)
T ss_dssp             EEEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGG
T ss_pred             CEEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCCh
Confidence            3567889999999998776433   48999965310          0        1122211      247999999999


Q ss_pred             CCeEEEEEEecCCCCcceeeEEEEEEeC
Q psy15738        160 SAGIYLCVANNMVGSSAAASIALHVLCK  187 (187)
Q Consensus       160 d~g~y~C~~~n~~g~~~s~~~~l~v~~~  187 (187)
                      |+|.|.|.+.+..+.. ...+.|.|.+|
T Consensus        83 D~G~Y~C~v~~~~~~~-~~~~~l~V~V~  109 (109)
T 2oyp_A           83 DHGTYCCRIQFPGLMN-DKKLELKLDIK  109 (109)
T ss_dssp             GCEEEEEEECCSSTTC-CEEEEEEEEEC
T ss_pred             hCeEEEEEEEcCCccc-ceEEEEEEEeC
Confidence            9999999999987666 46888888765

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.07  E-value=2.1e-10  Score=77.90  Aligned_cols=77  Identities=16%  Similarity=0.111  Sum_probs=56.5

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cE---EEeCc--EEEEecCCCCCCeEEEEEEecCCCCc-ceeeE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EY---SYSGN--SLTVRHTNRHSAGIYLCVANNMVGSS-AAASI  180 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~---~~~~~--~l~i~~~~~~d~g~y~C~~~n~~g~~-~s~~~  180 (187)
                      ..+.+|+.++|.|.+.+ +.+.+.|+++|..+... ..   .....  .|.|.+++.+|+|.|.|.+.|..|.. .+..+
T Consensus        18 ~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~   96 (218)
T 1uct_A           18 PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTL   96 (218)
T ss_dssp             SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCE
T ss_pred             CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCCE
Confidence            36789999999999987 67899999998654211 11   11234  89999999999999999999986532 24566


Q ss_pred             EEEEE
Q psy15738        181 ALHVL  185 (187)
Q Consensus       181 ~l~v~  185 (187)
                      .|.|.
T Consensus        97 ~l~V~  101 (218)
T 1uct_A           97 ELVVT  101 (218)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            66664

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.06  E-value=1.4e-09  Score=66.20  Aligned_cols=80  Identities=29%  Similarity=0.359  Sum_probs=57.4

Q ss_pred             eEEEecCCcEEEEeEe-ccCCCCc----EEEEeCCeeCC--------------CCcEEE-e--------CcEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKA-DGNPVPN----ITWTRKNNNLP--------------GGEYSY-S--------GNSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~-~g~p~p~----~~W~~~~~~~~--------------~~~~~~-~--------~~~l~i~~~~~  158 (187)
                      ...+..|+++.|.|.. .+.+.+.    +.|++++....              ..+... .        ...|.|.++..
T Consensus         9 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~   88 (118)
T 3udw_C            9 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRV   88 (118)
T ss_dssp             EEEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCCG
T ss_pred             eEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecCh
Confidence            3567899999999998 4444444    89999853210              112211 1        45799999999


Q ss_pred             CCCeEEEEEEec-CCCCcceeeEEEEEEeC
Q psy15738        159 HSAGIYLCVANN-MVGSSAAASIALHVLCK  187 (187)
Q Consensus       159 ~d~g~y~C~~~n-~~g~~~s~~~~l~v~~~  187 (187)
                      +|+|.|.|.+.+ ..|.. +..+.|.|..+
T Consensus        89 ~D~G~Y~C~v~~~~~~~~-~~~~~L~V~~~  117 (118)
T 3udw_C           89 EDEGNYTCLFVTFPQGSR-SVDIWLRVLAK  117 (118)
T ss_dssp             GGCEEEEEEEEEETTEEE-EEEEEEEEEC-
T ss_pred             HHCeEEEEEEEECCCCCc-cceEEEEEEeC
Confidence            999999999998 66655 57888888753

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.05  E-value=2.8e-10  Score=80.39  Aligned_cols=113  Identities=13%  Similarity=0.142  Sum_probs=71.8

Q ss_pred             cceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCC---cEEEEeCCeeCCCCcEEE-
Q psy15738         73 EERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP---NITWTRKNNNLPGGEYSY-  146 (187)
Q Consensus        73 ~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p---~~~W~~~~~~~~~~~~~~-  146 (187)
                      .+.|.|..  .+...+..+.|+|+.+|....+... ...+.+|+.++|.|.+.|.+++   .++|++++..+....... 
T Consensus        60 ~~~y~C~~~~~~~~~~~~v~l~V~~~P~~v~I~~~-~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~  138 (291)
T 1mq8_A           60 DSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPL-PSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGE  138 (291)
T ss_dssp             CCCCEEEEECSSCEEEEECEEEECBCCSCCCBCCC-CSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBT
T ss_pred             CCeEEEEEEcCCccEEEEEEEEEecCCCCCEEecC-CccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCC
Confidence            35799933  3346677889999988876433322 2337789999999999886443   489999997653221000 


Q ss_pred             -eCcEEEEecCCCCCCeEEEEEEecCCCC-------cceeeEEEEEEe
Q psy15738        147 -SGNSLTVRHTNRHSAGIYLCVANNMVGS-------SAAASIALHVLC  186 (187)
Q Consensus       147 -~~~~l~i~~~~~~d~g~y~C~~~n~~g~-------~~s~~~~l~v~~  186 (187)
                       ....+.+......+.+.|.|.|.|..+.       ..+.+..|.|+|
T Consensus       139 ~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~  186 (291)
T 1mq8_A          139 PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFV  186 (291)
T ss_dssp             TEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC--
T ss_pred             CceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEe
Confidence             1234555444455566999999987552       124566777765

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.05  E-value=2e-09  Score=72.38  Aligned_cols=64  Identities=13%  Similarity=0.204  Sum_probs=52.3

Q ss_pred             eEEEecCCcEEEEeEecc-CCCCcEEEEeCCeeCCCCc-EEE--eC----cEEEEecCCCCCCeEEEEEEec
Q psy15738        107 KVEVKKGYSVTLECKADG-NPVPNITWTRKNNNLPGGE-YSY--SG----NSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~-~~~--~~----~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      ...+.+|..+.|.|.+.+ .|.|.+.|+++|..+.... +..  ..    ..|.|.++..+|+|.|+|.|.|
T Consensus        11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N   82 (207)
T 3rbs_A           11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD   82 (207)
T ss_dssp             EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE
T ss_pred             ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC
Confidence            467889999999999864 6999999999999885442 221  11    2699999999999999999999

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.05  E-value=5.2e-10  Score=76.44  Aligned_cols=129  Identities=10%  Similarity=0.117  Sum_probs=78.3

Q ss_pred             ccEEEeeccc-cccceeEEEEEecccceeEEeeccc----------eeeEEEEEEEE----cCCeeEEecCCceEEEecC
Q psy15738         49 CSYIILATSL-LHYLSYILAMEKEEEERKKKKKRKK----------RKKKKKKKEKR----IPPRIIYVSGAGKVEVKKG  113 (187)
Q Consensus        49 ~~~~~~~~~~-~~~~~~~~~v~~~d~g~y~c~~~~~----------~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g  113 (187)
                      .|+.+..... ....+.|.+++.+|+|.|.|.....          .......|.|.    .+|.+......  ..+..|
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~--~~~~~g  143 (230)
T 3n9g_H           66 GRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPS--SKSTSG  143 (230)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCC--CCCCTT
T ss_pred             CcEEEEecCCCCEEEEEECCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCC--ccccCC
Confidence            4555544332 2233558889999999999954322          12244567774    23333222221  234579


Q ss_pred             CcEEEEeEeccCCC--CcEEEEeCCeeCCCCcE-----------EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeE
Q psy15738        114 YSVTLECKADGNPV--PNITWTRKNNNLPGGEY-----------SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASI  180 (187)
Q Consensus       114 ~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~-----------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~  180 (187)
                      +.+.|.|.+.+.++  +.+.|  ++..+.....           ....+.|.+......| |.|.|.+.+..+.. ....
T Consensus       144 ~~v~L~C~~~~~~P~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~-~~~~  219 (230)
T 3n9g_H          144 GTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT-KVDK  219 (230)
T ss_dssp             CEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTE-EEEE
T ss_pred             CCEEEEEEEEeEECCCEEEEE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCc-ceEE
Confidence            99999999988543  45889  5544322111           1122478899888889 99999999987654 3444


Q ss_pred             EEE
Q psy15738        181 ALH  183 (187)
Q Consensus       181 ~l~  183 (187)
                      .+.
T Consensus       220 ~~~  222 (230)
T 3n9g_H          220 RVE  222 (230)
T ss_dssp             ECC
T ss_pred             Ecc
Confidence            443

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.04  E-value=1.1e-09  Score=73.34  Aligned_cols=79  Identities=24%  Similarity=0.427  Sum_probs=60.2

Q ss_pred             eEEEecCCcEEEEeEeccCC----CCcEEEEeC----------------CeeCC------CCcEEE-------eCcEEEE
Q psy15738        107 KVEVKKGYSVTLECKADGNP----VPNITWTRK----------------NNNLP------GGEYSY-------SGNSLTV  153 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p----~p~~~W~~~----------------~~~~~------~~~~~~-------~~~~l~i  153 (187)
                      ...+.+|+.+.|.|.+.+.|    .+.+.|++.                +....      ..+...       ....|.|
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i   88 (214)
T 3jz7_A            9 RIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINV   88 (214)
T ss_dssp             EEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEE
T ss_pred             eEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEE
Confidence            46788999999999998877    468999983                33222      122222       1357999


Q ss_pred             ecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        154 RHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       154 ~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .++..+|+|.|.|.+.|..|.. +..+.|.|..
T Consensus        89 ~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~  120 (214)
T 3jz7_A           89 TNLQLSDIGTYQCKVKKAPGVA-NKKFLLTVLV  120 (214)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             ccCChhhCeEEEEEEEeCCCcc-ccEEEEEEEc
Confidence            9999999999999999998876 6788888764

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.04  E-value=1.3e-09  Score=75.02  Aligned_cols=81  Identities=26%  Similarity=0.387  Sum_probs=59.5

Q ss_pred             CceEEEecCCcEEEEeEecc---CCCCcEEEEeCCeeCC-------------------------------CCcEEEe---
Q psy15738        105 AGKVEVKKGYSVTLECKADG---NPVPNITWTRKNNNLP-------------------------------GGEYSYS---  147 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g---~p~p~~~W~~~~~~~~-------------------------------~~~~~~~---  147 (187)
                      +....+.+|+.+.|.|.+.+   .|.+.+.|++++....                               ..+....   
T Consensus         9 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   88 (250)
T 2fbo_J            9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLA   88 (250)
T ss_dssp             CSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTT
T ss_pred             CCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCC
Confidence            33567889999999999987   7888999999874320                               0111111   


Q ss_pred             CcEEEEecCCCCCCeEEEEEEecCCCCcc----eeeEEEEEE
Q psy15738        148 GNSLTVRHTNRHSAGIYLCVANNMVGSSA----AASIALHVL  185 (187)
Q Consensus       148 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~----s~~~~l~v~  185 (187)
                      ...|.|.++..+|+|.|.|.+.|..+...    +..+.|.|.
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~  130 (250)
T 2fbo_J           89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVT  130 (250)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEET
T ss_pred             cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEe
Confidence            24799999999999999999999877542    246666664

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.03  E-value=3.6e-09  Score=71.16  Aligned_cols=124  Identities=6%  Similarity=-0.045  Sum_probs=72.1

Q ss_pred             eeccEEEeec--cccccceeEEEEEecccceeEEeeccce-------------eeEEEEEEEEcCCeeEEecCCceEEEe
Q psy15738         47 TSCSYIILAT--SLLHYLSYILAMEKEEEERKKKKKRKKR-------------KKKKKKKEKRIPPRIIYVSGAGKVEVK  111 (187)
Q Consensus        47 ~~~~~~~~~~--~~~~~~~~~~~v~~~d~g~y~c~~~~~~-------------~~~~~~l~v~~~p~~~~~~~~~~~~~~  111 (187)
                      +..|+.+...  ......+.|..++.+|.|.|.|......             ......|.|...+..  ...+ ...+.
T Consensus        55 ~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~--~~~P-~v~~~  131 (207)
T 1ypz_E           55 ENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQP--PAKP-SVFIM  131 (207)
T ss_dssp             EETTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCC--CCCC-EEEEE
T ss_pred             cCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCC--CCCC-eEEEe
Confidence            3466666543  1222345588899999999999543321             123457888643211  1111 12222


Q ss_pred             cCCcEEEEeEeccC-CC-CcEEEEeCCeeCCCC-cE-E-EeCcEEEEecCCC-CCCeEEEEEEecCCCCc
Q psy15738        112 KGYSVTLECKADGN-PV-PNITWTRKNNNLPGG-EY-S-YSGNSLTVRHTNR-HSAGIYLCVANNMVGSS  175 (187)
Q Consensus       112 ~g~~~~l~C~~~g~-p~-p~~~W~~~~~~~~~~-~~-~-~~~~~l~i~~~~~-~d~g~y~C~~~n~~g~~  175 (187)
                      .+ .+.|.|.+.|. |. +.+.|+++ ..+... .. . ...+.+.+..... .|.|.|.|.+.|..+..
T Consensus       132 ~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~~  199 (207)
T 1ypz_E          132 KN-GTNVACLVKDFYPKEVTISLRSS-KKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSETV  199 (207)
T ss_dssp             EE-TTEEEEEEEEESSSCCEEEEECS-SEEEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTEEE
T ss_pred             CC-CCeEEEEEeeEeCCCeEEEEecC-CcccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCccE
Confidence            22 36899999876 43 68999999 554322 11 1 1234455544444 56899999999987644

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.03  E-value=1.7e-09  Score=66.11  Aligned_cols=80  Identities=24%  Similarity=0.471  Sum_probs=58.5

Q ss_pred             eEEEecCCcEEEEeEeccC--CCCcEEEEeCCeeCC--------------CCcEEE-eCcEEEEecCCCCCCeEEEEEEe
Q psy15738        107 KVEVKKGYSVTLECKADGN--PVPNITWTRKNNNLP--------------GGEYSY-SGNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~--p~p~~~W~~~~~~~~--------------~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      ...+..|+++.|.|...+.  +.+.+.|++++..+.              .++... .+..|.|.++..+|.|.|.|.+.
T Consensus        12 ~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~v~   91 (117)
T 3q0h_A           12 NISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCIYH   91 (117)
T ss_dssp             CEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEECSTTCEEECSCCGGGCEEEEEEEE
T ss_pred             CEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeCCceEEEEeeCChhhCEEEEEEEE
Confidence            4678899999999998763  234689999764321              112222 24579999999999999999976


Q ss_pred             c-CCCCcceeeEEEEEEeC
Q psy15738        170 N-MVGSSAAASIALHVLCK  187 (187)
Q Consensus       170 n-~~g~~~s~~~~l~v~~~  187 (187)
                      + ..|.. +..+.|.|..+
T Consensus        92 ~~~~g~~-~~~~~L~V~~p  109 (117)
T 3q0h_A           92 TYPDGTY-TGRIFLEVLES  109 (117)
T ss_dssp             EETTCCE-EEEEEEEEECC
T ss_pred             ECCCCCe-EEEEEEEEEcc
Confidence            5 55666 67888988764

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.02  E-value=2.6e-09  Score=71.37  Aligned_cols=87  Identities=17%  Similarity=0.232  Sum_probs=60.1

Q ss_pred             cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE----E--EeCcEEEEecCCCCCCeEEEEEE
Q psy15738         95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY----S--YSGNSLTVRHTNRHSAGIYLCVA  168 (187)
Q Consensus        95 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~----~--~~~~~l~i~~~~~~d~g~y~C~~  168 (187)
                      .+|.+....  . ..+.+|+.+.|.|.+.+ +.+.+.|+|+|..+.....    .  .....|.|.+++.+|+|.|.|.+
T Consensus         7 ~~P~i~~~p--~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a   82 (201)
T 1nkr_A            7 RKPSLLAHP--G-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYG   82 (201)
T ss_dssp             CCCEEEEES--C-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCeEEEEc--C-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeE
Confidence            455554322  2 46789999999999974 7789999999875532110    0  13467999999999999999999


Q ss_pred             ecCC----CCcceeeEEEEEE
Q psy15738        169 NNMV----GSSAAASIALHVL  185 (187)
Q Consensus       169 ~n~~----g~~~s~~~~l~v~  185 (187)
                      .|..    ....+..+.|.|.
T Consensus        83 ~~~~~~~~~~~~s~~~~l~V~  103 (201)
T 1nkr_A           83 SVTHSPYQVSAPSDPLDIVII  103 (201)
T ss_dssp             EBTTBTTCCCCCCCCEEEEEE
T ss_pred             ecCCCCccccCCCCCEEEEee
Confidence            8652    1222456666664

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.02  E-value=2.4e-09  Score=71.93  Aligned_cols=80  Identities=20%  Similarity=0.333  Sum_probs=57.5

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC-------------CCCcEEEe----CcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL-------------PGGEYSYS----GNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~-------------~~~~~~~~----~~~l~i~~~~~~d~g~y~  165 (187)
                      +....+.+|+.+.|.|.+.+.|.+.+.|+++.  ..+             ...+....    ...|.|.++..+|.|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            45567889999999999999988899999853  211             01222211    237999999999999999


Q ss_pred             EEEecCCCCcceeeEEEEE
Q psy15738        166 CVANNMVGSSAAASIALHV  184 (187)
Q Consensus       166 C~~~n~~g~~~s~~~~l~v  184 (187)
                      |.+.|..+........|.|
T Consensus        87 C~~~~~~~~~~~~~~~l~V  105 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLEL  105 (210)
T ss_dssp             EEECSSSSCEECCCEEEEE
T ss_pred             EEEEcCCCceeCCCEEEEE
Confidence            9999987654223344554

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.02  E-value=1.3e-09  Score=72.12  Aligned_cols=76  Identities=17%  Similarity=0.113  Sum_probs=56.0

Q ss_pred             EEecCCcEEEEeEeccCCCCcEEEEeCCeeCCC---Cc-EEEeCcEEEEecCCCCCCeEEEEEEecCCCCc-ceeeEEEE
Q psy15738        109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPG---GE-YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS-AAASIALH  183 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~---~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~s~~~~l~  183 (187)
                      .+.+|+.++|.|.+.+ +++.+.|++++..+..   .. .......|.|.+++..|+|.|.|.+.|..+.. .+..+.|.
T Consensus        14 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~   92 (188)
T 1oll_A           14 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV   92 (188)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred             cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEE
Confidence            6789999999999875 4568999999976431   00 01134679999999999999999999865432 24566666


Q ss_pred             EE
Q psy15738        184 VL  185 (187)
Q Consensus       184 v~  185 (187)
                      |.
T Consensus        93 V~   94 (188)
T 1oll_A           93 VT   94 (188)
T ss_dssp             EE
T ss_pred             ec
Confidence            64

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=99.01  E-value=6.2e-09  Score=65.00  Aligned_cols=81  Identities=26%  Similarity=0.404  Sum_probs=56.6

Q ss_pred             CceEEEecCCcEEEEeEecc---CCCCcEEEEeCCeeCC-----------------------------C--CcEEEe---
Q psy15738        105 AGKVEVKKGYSVTLECKADG---NPVPNITWTRKNNNLP-----------------------------G--GEYSYS---  147 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g---~p~p~~~W~~~~~~~~-----------------------------~--~~~~~~---  147 (187)
                      +....+..|+++.|.|....   .+.+.+.|++.+....                             .  .+....   
T Consensus        11 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~   90 (135)
T 1xt5_A           11 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLA   90 (135)
T ss_dssp             CSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEESCTT
T ss_pred             CceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEecCC
Confidence            34467889999999999753   5677899998754210                             0  122221   


Q ss_pred             CcEEEEecCCCCCCeEEEEEEecCCCCc----ceeeEEEEEE
Q psy15738        148 GNSLTVRHTNRHSAGIYLCVANNMVGSS----AAASIALHVL  185 (187)
Q Consensus       148 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~----~s~~~~l~v~  185 (187)
                      ...|.|.++..+|+|.|.|.+.+..+..    ....+.|.|.
T Consensus        91 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V~  132 (135)
T 1xt5_A           91 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVT  132 (135)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECSSCCSGGGEEEEEEEEEEE
T ss_pred             CCeEEECCCChhhCcEEEEEEEcCCccccccccceeEEEEEe
Confidence            2579999999999999999999864422    1356677664

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.01  E-value=1.3e-09  Score=74.00  Aligned_cols=77  Identities=18%  Similarity=0.263  Sum_probs=55.2

Q ss_pred             eEEEecCCcEEEEeEeccCCCC---cEEEEeCCeeCC------------------CCcEEE-------eCcEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVP---NITWTRKNNNLP------------------GGEYSY-------SGNSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p---~~~W~~~~~~~~------------------~~~~~~-------~~~~l~i~~~~~  158 (187)
                      ...+..|+++.|.|.+.+.+.+   .+.|++++....                  ..+...       ....|.|.++..
T Consensus        13 pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~   92 (226)
T 4f80_A           13 PILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTA   92 (226)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCch
Confidence            4678899999999999876654   589998764210                  001111       124799999999


Q ss_pred             CCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        159 HSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       159 ~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      +|.|.|.|.|.|..|.. ...+.+.+
T Consensus        93 ~D~G~Y~C~a~n~~~~~-~~~v~~~~  117 (226)
T 4f80_A           93 SDSGKYLCYFQDGDFYE-KALVELKV  117 (226)
T ss_dssp             GGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             HHCeeEEEEEECCCcEE-EEEEEEee
Confidence            99999999999988766 35555544

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.00  E-value=1.7e-09  Score=72.74  Aligned_cols=80  Identities=16%  Similarity=0.290  Sum_probs=57.1

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-------------CCCcEEE----eCcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-------------PGGEYSY----SGNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-------------~~~~~~~----~~~~l~i~~~~~~d~g~y~  165 (187)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++...  ..             ...++..    ....|.|.++..+|+|.|.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   87 (213)
T 3r06_A            8 PSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYY   87 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEE
Confidence            445678899999999999999889999998431  00             0112221    1237999999999999999


Q ss_pred             EEEecCCCCcceeeEEEEE
Q psy15738        166 CVANNMVGSSAAASIALHV  184 (187)
Q Consensus       166 C~~~n~~g~~~s~~~~l~v  184 (187)
                      |.+.|..+........|.|
T Consensus        88 C~~~~~~~~~~~~~~~l~V  106 (213)
T 3r06_A           88 CQQYYNYPWTFGPGTKLEI  106 (213)
T ss_dssp             EEECSSSSCEECCCEEEEE
T ss_pred             EecccCCceEEcCCceEEE
Confidence            9999876543334445555

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.00  E-value=1.2e-09  Score=73.67  Aligned_cols=78  Identities=21%  Similarity=0.248  Sum_probs=55.8

Q ss_pred             ceEEEecC--CcEEEEeEeccCCCCcEEEEeC---CeeCCCCc-EE-EeCcEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738        106 GKVEVKKG--YSVTLECKADGNPVPNITWTRK---NNNLPGGE-YS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAA  178 (187)
Q Consensus       106 ~~~~~~~g--~~~~l~C~~~g~p~p~~~W~~~---~~~~~~~~-~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~  178 (187)
                      ....+.+|  +.+.|.|.+.+ |.+.+.|++.   +..+.... .. .....|.|.++..+|+|.|.|.|.|..+...+.
T Consensus        15 ~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~   93 (213)
T 2x1w_L           15 GVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSI   93 (213)
T ss_dssp             EEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEECC
T ss_pred             eEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEEEE
Confidence            45678889  99999999976 7789999884   65554432 22 235689999999999999999999865544344


Q ss_pred             eEEEEE
Q psy15738        179 SIALHV  184 (187)
Q Consensus       179 ~~~l~v  184 (187)
                      .+.|.|
T Consensus        94 ~~~l~v   99 (213)
T 2x1w_L           94 MYIVVV   99 (213)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            456655

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=98.99  E-value=4.9e-09  Score=63.22  Aligned_cols=79  Identities=20%  Similarity=0.332  Sum_probs=57.3

Q ss_pred             ceEEEecCCcEEEEeEe-ccCCCCcEEEEeCCee-CC---------------CCcEEE--eCcEEEEecCCCCCCeEEEE
Q psy15738        106 GKVEVKKGYSVTLECKA-DGNPVPNITWTRKNNN-LP---------------GGEYSY--SGNSLTVRHTNRHSAGIYLC  166 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~~~-~~---------------~~~~~~--~~~~l~i~~~~~~d~g~y~C  166 (187)
                      ....+..|+++.|.|.. .+.+.+.+.|++.... +.               .++...  ....|.|.++..+|+|.|.|
T Consensus        11 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C   90 (110)
T 2ptt_A           11 PDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTYYM   90 (110)
T ss_dssp             CSEEEETTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECTTTCCEEESSCCGGGCEEEEE
T ss_pred             CCEEEecCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeCCCccEEECCCCcccCeEEEE
Confidence            34678899999999998 6667778999994321 10               012222  24679999999999999999


Q ss_pred             EEecCCCCcceeeEEEEEEe
Q psy15738        167 VANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       167 ~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .+.+.. .. ...+.|.|..
T Consensus        91 ~v~~~~-~~-~~~~~L~V~d  108 (110)
T 2ptt_A           91 RVLRET-EN-ELKITLEVFD  108 (110)
T ss_dssp             EEESSS-BC-CEEEEEEEEC
T ss_pred             EEEcCC-Cc-EEEEEEEEEc
Confidence            998765 23 4577787764

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.99  E-value=2.4e-09  Score=71.13  Aligned_cols=80  Identities=23%  Similarity=0.233  Sum_probs=59.8

Q ss_pred             CceEEEecCCcEEEEeEecc-CCCCcEEEEeCCeeCC---C----------------CcEE-EeCcEEEEecCCCCCCeE
Q psy15738        105 AGKVEVKKGYSVTLECKADG-NPVPNITWTRKNNNLP---G----------------GEYS-YSGNSLTVRHTNRHSAGI  163 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~---~----------------~~~~-~~~~~l~i~~~~~~d~g~  163 (187)
                      +....+..|+++.|.|.+.+ .+.+.+.|++++..+.   .                .+.. ..+..|.|.+++.+|.|.
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~   84 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGS   84 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEE
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCce
Confidence            44567889999999999875 3457899999875331   0                0111 124679999999999999


Q ss_pred             EEEEEecCCCCcceeeEEEEEE
Q psy15738        164 YLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       164 y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      |.|.+.|..+.. ...+.|.|.
T Consensus        85 Y~C~~~~~~~~~-~~~~~L~V~  105 (193)
T 2if7_A           85 YRAQISTKTSAK-LSSYTLRIL  105 (193)
T ss_dssp             EEEEEECSSCEE-EEEEEEEEE
T ss_pred             EEEEEEecCCCe-EEEEEEEEE
Confidence            999999988866 457777774

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.98  E-value=1.9e-10  Score=81.23  Aligned_cols=150  Identities=9%  Similarity=0.085  Sum_probs=32.9

Q ss_pred             ceEEccCCCC---eeEEEeC-eEeeeccEEEeeccccccceeEEEEEecccc-eeEEeecc----------ceeeEEEEE
Q psy15738         27 AIMFADSRPE---STFWIFG-KLITSCSYIILATSLLHYLSYILAMEKEEEE-RKKKKKRK----------KRKKKKKKK   91 (187)
Q Consensus        27 ~~~~~~~~~~---~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g-~y~c~~~~----------~~~~~~~~l   91 (187)
                      +|.+.++.+.   ...|++| +++.....    ........+...+...|.| .|+|.+..          ...+..+.|
T Consensus       107 tC~v~g~~P~~~l~itW~kg~~~l~~~~~----~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L  182 (291)
T 1mq8_A          107 RCQVEGGAPRANLTVVLLRGEKELKREPA----VGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQL  182 (291)
T ss_dssp             EEEECCCBSTTTEEEEEESSSSEEEEEEC----CBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEEC
T ss_pred             EEEecCccCCCCcEEEEEECCEEeecccC----CCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEE
Confidence            5666666554   3577755 44443221    0111122234445555654 99995442          134567899


Q ss_pred             EEEcCCeeE-EecCCceEEEecCCcEEEEeEeccCCCC---cEEEEeCCeeCCCCcEEEeCcEEEEecC---CCCC--Ce
Q psy15738         92 EKRIPPRII-YVSGAGKVEVKKGYSVTLECKADGNPVP---NITWTRKNNNLPGGEYSYSGNSLTVRHT---NRHS--AG  162 (187)
Q Consensus        92 ~v~~~p~~~-~~~~~~~~~~~~g~~~~l~C~~~g~p~p---~~~W~~~~~~~~~~~~~~~~~~l~i~~~---~~~d--~g  162 (187)
                      +|+++|... ....+  ..+.+|+.+.|.|.+.|.|++   .+.|+++|+.+.... ...+..+.+...   ...+  .+
T Consensus       183 ~V~~~P~~~~~~~~p--~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~-~~~g~~~~~~~~~~~~~~~~~~~  259 (291)
T 1mq8_A          183 QTFVLPATPPQLVSP--RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV-TYGNDSFSAKASVSVTAEDEGTQ  259 (291)
T ss_dssp             BC------------------------------------------------------------------------------
T ss_pred             EEEecCCCCceecCC--cCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCcee-eecCCeEEEEEecceeEcCCCCE
Confidence            999886432 12222  257789999999999998654   589999998876432 112233333322   2333  67


Q ss_pred             EEEEEEecCCCCcceeeEEEEE
Q psy15738        163 IYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       163 ~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      .|.|.|.+..... .....|.|
T Consensus       260 ~~~C~~~~~~~~~-~~~~~l~v  280 (291)
T 1mq8_A          260 RLTCAVILGNQSQ-ETLQTVTI  280 (291)
T ss_dssp             ----------------------
T ss_pred             EEEEEEEeCCcce-EEEEEEEE
Confidence            7889988754444 24444554

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.98  E-value=1.8e-09  Score=70.96  Aligned_cols=73  Identities=14%  Similarity=0.219  Sum_probs=52.3

Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      ..+.+|+.+.|.|.+.+.|.|  .+.|++++..+...........|.+.  ...|.|.|.|.+.|.   . +..+.|.|.
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~~~~~l~i~--~~~d~G~Y~C~~~n~---~-~~~~~l~V~   81 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVD--SDDQWGEYSCVFLPE---P-MGTANIQLH   81 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEEC--GGGCCEEEEEEEEST---T-SCEEEEEEC
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccCCcEEEEEe--chhhCeEEEEEEECC---c-CcEEEEEEe
Confidence            457889999999999988777  89999999876544321122344444  578999999999982   2 345566664


Q ss_pred             e
Q psy15738        186 C  186 (187)
Q Consensus       186 ~  186 (187)
                      +
T Consensus        82 ~   82 (184)
T 3b5h_A           82 G   82 (184)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=98.98  E-value=1.9e-09  Score=74.87  Aligned_cols=122  Identities=13%  Similarity=0.185  Sum_probs=72.3

Q ss_pred             ccEEEeecc-ccccceeEEEEEecccceeEEeeccc-------------eeeEEEEEEEEc----CCeeEEecCCceEEE
Q psy15738         49 CSYIILATS-LLHYLSYILAMEKEEEERKKKKKRKK-------------RKKKKKKKEKRI----PPRIIYVSGAGKVEV  110 (187)
Q Consensus        49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~~-------------~~~~~~~l~v~~----~p~~~~~~~~~~~~~  110 (187)
                      .|+.+.... .......|.+++.+|.|.|.|.....             .......|.|..    +|.+.....  ...+
T Consensus        89 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~--~~~~  166 (256)
T 3sob_H           89 GRFTISADTSKNTAYLQMNSLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAP--SSKS  166 (256)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECC--C---
T ss_pred             CcEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECC--Cccc
Confidence            455544332 12233557889999999999954421             233445677752    333321121  2235


Q ss_pred             ecCCcEEEEeEeccC-C-CCcEEEEeCCeeCCCCc-----------EEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        111 KKGYSVTLECKADGN-P-VPNITWTRKNNNLPGGE-----------YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~-p-~p~~~W~~~~~~~~~~~-----------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      .+|+.+.|.|.+.+. | ++.+.|  ++..+....           .....+.|.+......| |.|.|.+.+..+..
T Consensus       167 ~~g~~v~L~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~  241 (256)
T 3sob_H          167 TSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  241 (256)
T ss_dssp             --TTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTE
T ss_pred             ccCCcEEEEEEEEEEECCCeEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCc
Confidence            679999999999885 4 346889  544332211           01122468889888889 99999999987654

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.97  E-value=4.8e-09  Score=72.24  Aligned_cols=81  Identities=21%  Similarity=0.241  Sum_probs=59.4

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCc-----EEEEeCCeeCCCCc---------E-EE-------------eCcEEEEecC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPN-----ITWTRKNNNLPGGE---------Y-SY-------------SGNSLTVRHT  156 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~-----~~W~~~~~~~~~~~---------~-~~-------------~~~~l~i~~~  156 (187)
                      +....+..|+.+.|.|.+.|.|++.     +.|++++.......         . ..             ....|.|.++
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v   89 (248)
T 3pv7_A           10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI   89 (248)
T ss_dssp             TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred             CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence            3456788999999999999988776     99999753321100         0 00             1234999999


Q ss_pred             CCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        157 NRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       157 ~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      +.+|.|.|.|.+.|..+.. ...+.|.|..
T Consensus        90 ~~~D~G~Y~C~~~~~~~~~-~~~~~L~V~~  118 (248)
T 3pv7_A           90 QLEEAGEYRCEVVVTPLKA-QGTVQLEVVA  118 (248)
T ss_dssp             CGGGCEEEEEEEEETTEEE-EEEEEEEEEB
T ss_pred             CHHHCeEEEEEEEeCCccc-eeEEEEEEec
Confidence            9999999999999987765 4677777753

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.97  E-value=2.3e-09  Score=69.96  Aligned_cols=76  Identities=16%  Similarity=0.225  Sum_probs=57.7

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCC-------------CCcEEE--eCcEEEEecCCCCCCeEEEEEEecC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLP-------------GGEYSY--SGNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~-------------~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      ...+..|+++.|.|.+. .|.+.+.|++++..+.             ..+...  .++.|.|.+++..|+|.|.|.+.|.
T Consensus         4 ~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~   82 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (171)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence            35678899999999984 4788999999875321             012222  3478999999999999999999998


Q ss_pred             CCCcceeeEEEEEEe
Q psy15738        172 VGSSAAASIALHVLC  186 (187)
Q Consensus       172 ~g~~~s~~~~l~v~~  186 (187)
                      .|   +..+.|.|..
T Consensus        83 ~~---~~~~~L~V~~   94 (171)
T 1ccz_A           83 TD---TMKFFLYVLE   94 (171)
T ss_dssp             CS---CEEEEEEEEC
T ss_pred             CC---cEEEEEEEEC
Confidence            77   3567777753

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.97  E-value=3.7e-09  Score=72.85  Aligned_cols=81  Identities=20%  Similarity=0.374  Sum_probs=57.6

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeC---------------CCCcEEEe----CcEEEEecCCCCCCeEE
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNL---------------PGGEYSYS----GNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~---------------~~~~~~~~----~~~l~i~~~~~~d~g~y  164 (187)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++.....               ...++...    ...|.|.++..+|+|.|
T Consensus        10 ~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   89 (250)
T 3esu_F           10 STSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTY   89 (250)
T ss_dssp             SCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEE
Confidence            344567889999999999999999999999853100               01222111    12799999999999999


Q ss_pred             EEEEecCCCCcceeeEEEEE
Q psy15738        165 LCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       165 ~C~~~n~~g~~~s~~~~l~v  184 (187)
                      .|.+.|..+........|.|
T Consensus        90 ~C~~~n~~~~~~~~~~~l~V  109 (250)
T 3esu_F           90 FCQQGNTLPWTFGGGTKLEI  109 (250)
T ss_dssp             EEEECSSSSCEECCCEEEEE
T ss_pred             EEEEeeCCCceECCCEEEEE
Confidence            99999976653333444554

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.96  E-value=4.9e-09  Score=65.54  Aligned_cols=78  Identities=21%  Similarity=0.350  Sum_probs=54.5

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC-----CCCcEEE--e--CcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL-----PGGEYSY--S--GNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~-----~~~~~~~--~--~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      +....+.+|+.+.|.|.+.+.  +.+.|+++.  ..+     ...++..  .  ...|.|.++..+|+|.|.|.+.|..|
T Consensus        24 p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g  101 (133)
T 3khq_A           24 PRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCKQKCDSA  101 (133)
T ss_dssp             CSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCTTTTEEEEEETTEEEEEECSCCGGGCEEEEEEESSCC-
T ss_pred             CceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEcCCCEEEEEECCCChHHCEEEEEEEEeCCC
Confidence            455678899999999999887  889999873  211     1233322  1  13699999999999999999999875


Q ss_pred             Cc---ceeeEEEEE
Q psy15738        174 SS---AAASIALHV  184 (187)
Q Consensus       174 ~~---~s~~~~l~v  184 (187)
                      ..   ......|.|
T Consensus       102 ~~~~~~g~gt~L~V  115 (133)
T 3khq_A          102 NHNVTDSCGTELLV  115 (133)
T ss_dssp             ------CCCEEEEE
T ss_pred             CcceeECCCEEEEE
Confidence            21   123455555

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.96  E-value=1.4e-09  Score=73.92  Aligned_cols=81  Identities=23%  Similarity=0.336  Sum_probs=60.9

Q ss_pred             CceEEEecCCcEEEEeEeccCCC-CcEEEEeCCeeCC--------------CCcE-----------EEeCcEEEEecCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPV-PNITWTRKNNNLP--------------GGEY-----------SYSGNSLTVRHTNR  158 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~-p~~~W~~~~~~~~--------------~~~~-----------~~~~~~l~i~~~~~  158 (187)
                      +....+.+|+.+.|.|.+.+.|. +.+.|++++....              ..+.           ....+.|.|.++..
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~   86 (231)
T 2pet_A            7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQV   86 (231)
T ss_dssp             CSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCG
T ss_pred             CCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCc
Confidence            44567899999999999999885 8999998654321              0111           11235599999999


Q ss_pred             CCCeEEEEEEecCC-CCcceeeEEEEEEe
Q psy15738        159 HSAGIYLCVANNMV-GSSAAASIALHVLC  186 (187)
Q Consensus       159 ~d~g~y~C~~~n~~-g~~~s~~~~l~v~~  186 (187)
                      +|.|.|.|.+.+.. +.. +..+.|.|..
T Consensus        87 ~D~G~Y~C~~~~~~~~~~-~~~~~l~V~~  114 (231)
T 2pet_A           87 GDERDYVCVVRAGAAGTA-EATARLNVFA  114 (231)
T ss_dssp             GGCEEEEEEEECGGGCEE-EEEEEEEEEB
T ss_pred             ccCceEEEEEEecCCCce-EEEEEEEEEe
Confidence            99999999999987 555 6777887764

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=98.96  E-value=1e-08  Score=62.90  Aligned_cols=68  Identities=21%  Similarity=0.324  Sum_probs=50.9

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC-------------CCCcEEEe----CcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL-------------PGGEYSYS----GNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~-------------~~~~~~~~----~~~l~i~~~~~~d~g~y~  165 (187)
                      +....+.+|+++.|.|.+.+.+.+.+.|++..  ...             ...+....    ...|.|.++..+|+|.|.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~   87 (120)
T 1mqk_L            8 PVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYY   87 (120)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEEcCCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEEEEECCCCHHHCEEEE
Confidence            34567889999999999988888899999853  111             01222221    246999999999999999


Q ss_pred             EEEecCC
Q psy15738        166 CVANNMV  172 (187)
Q Consensus       166 C~~~n~~  172 (187)
                      |.+.|..
T Consensus        88 C~~~~~~   94 (120)
T 1mqk_L           88 CQHHYGT   94 (120)
T ss_dssp             EEECSSS
T ss_pred             EEEEeCC
Confidence            9999853

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.95  E-value=2.7e-09  Score=70.37  Aligned_cols=80  Identities=14%  Similarity=0.330  Sum_probs=59.2

Q ss_pred             ceEEEecCCcEEEEeEec--cCCCCcEEEEe--CCeeC-----------CCCcEE-EeCcEEEEecCCCCCCeEEEEEEe
Q psy15738        106 GKVEVKKGYSVTLECKAD--GNPVPNITWTR--KNNNL-----------PGGEYS-YSGNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~--g~p~p~~~W~~--~~~~~-----------~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      .......|+++.|.|...  +.+.+.|.|++  ++..+           ...+.. ..+++|.|.+++..|+|.|.|.+.
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~   86 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIY   86 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEE
Confidence            345678899999999543  24567899999  87654           122332 346789999999999999999999


Q ss_pred             cCCCCcc-eeeEEEEEE
Q psy15738        170 NMVGSSA-AASIALHVL  185 (187)
Q Consensus       170 n~~g~~~-s~~~~l~v~  185 (187)
                      |..|... +..+.|.|.
T Consensus        87 n~~g~~~~~~~~~L~V~  103 (182)
T 1hnf_A           87 DTKGKNVLEKIFDLKIQ  103 (182)
T ss_dssp             ETTSCEEEEEEEEEEEE
T ss_pred             eCCCceeEEEEEEEEEc
Confidence            9888753 246667765

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.95  E-value=1.2e-08  Score=61.50  Aligned_cols=67  Identities=18%  Similarity=0.351  Sum_probs=50.4

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--e---C----------CCCcEEEe----CcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--N---L----------PGGEYSYS----GNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~---~----------~~~~~~~~----~~~l~i~~~~~~d~g~y~  165 (187)
                      +....+.+|+++.|.|.+.+.+.+.+.|++...  .   +          ...+....    ...|.|.++..+|+|.|.
T Consensus        10 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~   89 (109)
T 2q20_A           10 PSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYY   89 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChhhCEEEE
Confidence            345678899999999999888888899998641  0   1          01222211    247999999999999999


Q ss_pred             EEEecC
Q psy15738        166 CVANNM  171 (187)
Q Consensus       166 C~~~n~  171 (187)
                      |.+.+.
T Consensus        90 C~~~~~   95 (109)
T 2q20_A           90 CQQYDN   95 (109)
T ss_dssp             EEECSS
T ss_pred             EEEeeC
Confidence            999985

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.95  E-value=4.9e-09  Score=70.09  Aligned_cols=78  Identities=19%  Similarity=0.233  Sum_probs=58.7

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCC--------------------CcEE-EeCcEEEEecCCCCCCeEEEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG--------------------GEYS-YSGNSLTVRHTNRHSAGIYLC  166 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~--------------------~~~~-~~~~~l~i~~~~~~d~g~y~C  166 (187)
                      ..+.+|+.+.|.|...+.+.+.+.|++++.....                    .+.. ..++.|.|.+++..|.|.|.|
T Consensus         9 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C   88 (208)
T 3r4d_A            9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTL   88 (208)
T ss_dssp             SEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred             ceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEEE
Confidence            4678999999999988888889999987542211                    1111 123579999999999999999


Q ss_pred             EEecCCCCcceeeEEEEEE
Q psy15738        167 VANNMVGSSAAASIALHVL  185 (187)
Q Consensus       167 ~~~n~~g~~~s~~~~l~v~  185 (187)
                      .+.|..+...+..+.|.|.
T Consensus        89 ~~~~~~~~~~~~~~~l~V~  107 (208)
T 3r4d_A           89 DMTDENYRRTQATVRFHVH  107 (208)
T ss_dssp             EEECSSCEEEEEEEEEEEE
T ss_pred             EEEcccCceeEEEEEEEec
Confidence            9999865444567777775

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.94  E-value=8.8e-09  Score=69.16  Aligned_cols=79  Identities=19%  Similarity=0.273  Sum_probs=58.1

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeC--CeeC-------------CCCcEEE----eCcEEEEecCCCCCCeEEEEE
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRK--NNNL-------------PGGEYSY----SGNSLTVRHTNRHSAGIYLCV  167 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~--~~~~-------------~~~~~~~----~~~~l~i~~~~~~d~g~y~C~  167 (187)
                      ...+.+|+.+.|.|.+.+.|.+.+.|++.  +...             ...++..    ....|.|.++..+|+|.|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   88 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQ   88 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEE
Confidence            56788999999999999999999999983  2111             1112221    134699999999999999999


Q ss_pred             EecCCCC--cceeeEEEEEE
Q psy15738        168 ANNMVGS--SAAASIALHVL  185 (187)
Q Consensus       168 ~~n~~g~--~~s~~~~l~v~  185 (187)
                      +.|..+.  ..+..+.|.|.
T Consensus        89 ~~~~~~~~~~~~~~~~l~V~  108 (213)
T 3mj8_L           89 SWDGTNSAWVFGSGTKVTVL  108 (213)
T ss_dssp             EEETTTTEEEEBCCEEEEEE
T ss_pred             eccCCcceeEEcCceEEEEe
Confidence            9998872  22455666664

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.94  E-value=4.1e-09  Score=72.20  Aligned_cols=81  Identities=16%  Similarity=0.270  Sum_probs=57.7

Q ss_pred             CceEEEecCCcEEEEeEeccCC----CCcEEEEeCC--eeC-------------CCCcEEEe----CcEEEEecCCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP----VPNITWTRKN--NNL-------------PGGEYSYS----GNSLTVRHTNRHSA  161 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p----~p~~~W~~~~--~~~-------------~~~~~~~~----~~~l~i~~~~~~d~  161 (187)
                      +....+.+|+.+.|.|.+.+.|    .+.+.|+++.  ..+             ...+....    ...|.|.++..+|+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   87 (240)
T 1moe_A            8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV   87 (240)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhC
Confidence            4456788999999999999988    7889999863  111             01122211    12799999999999


Q ss_pred             eEEEEEEecCCCCcceeeEEEEEE
Q psy15738        162 GIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       162 g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      |.|.|.+.|..+...+....|.|.
T Consensus        88 G~Y~C~~~n~~~~~~~~~~~l~V~  111 (240)
T 1moe_A           88 ATYYCQQTNEDPYTFGGGTKLEIK  111 (240)
T ss_dssp             EEEEEEECSSSSCCBCCCEEEEEC
T ss_pred             EEEEEEEccCCceeecCCEEEEEe
Confidence            999999999866532345556554

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.94  E-value=2.9e-09  Score=71.72  Aligned_cols=77  Identities=21%  Similarity=0.315  Sum_probs=54.5

Q ss_pred             EEEecCCcEEEEeEeccCCCCc---EEEEeCCeeCC-----------------CCcEE-----------EeCcEEEEecC
Q psy15738        108 VEVKKGYSVTLECKADGNPVPN---ITWTRKNNNLP-----------------GGEYS-----------YSGNSLTVRHT  156 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~---~~W~~~~~~~~-----------------~~~~~-----------~~~~~l~i~~~  156 (187)
                      ..+..|+++.|.|.+.+.|.+.   +.|+|++....                 ..+..           ....+|.|.++
T Consensus        11 V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v   90 (225)
T 4fmk_A           11 VRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGL   90 (225)
T ss_dssp             EEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECSC
T ss_pred             EEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEccC
Confidence            4567899999999999887664   78999764320                 00000           02356999999


Q ss_pred             CCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        157 NRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       157 ~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      ..+|.|.|.|.+.|..+........+.+
T Consensus        91 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~  118 (225)
T 4fmk_A           91 RVEDEGNYTCEFATFPNGTRRGVTWLRV  118 (225)
T ss_dssp             CGGGCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CHHHCcceEEEEEeCCCcceeeeeeeee
Confidence            9999999999999987765434444433

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=98.94  E-value=9.1e-08  Score=66.00  Aligned_cols=112  Identities=13%  Similarity=0.167  Sum_probs=69.1

Q ss_pred             EEEEecccceeEEee--ccceeeEEEEEEEEcCCe-eEEecCCceEEEecCCcEEEEeEe--cc-CC-----CCcEEEEe
Q psy15738         66 LAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPR-IIYVSGAGKVEVKKGYSVTLECKA--DG-NP-----VPNITWTR  134 (187)
Q Consensus        66 ~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~~~g~~~~l~C~~--~g-~p-----~p~~~W~~  134 (187)
                      ..+...|.|.|+|..  ..+.......+.|..++. ......+....+..+..+.|.+.+  .| .|     ...++|++
T Consensus        57 ~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyK  136 (304)
T 3shs_A           57 ADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSK  136 (304)
T ss_dssp             SSCCGGGCEEEEEEEEETTTCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEE
T ss_pred             eeccccCCeEEEEEEEECCCCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEee
Confidence            356677888888833  233333333334443332 222334555566678889998887  44 34     35899999


Q ss_pred             CCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcc-eeeEEEE
Q psy15738        135 KNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSA-AASIALH  183 (187)
Q Consensus       135 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-s~~~~l~  183 (187)
                      ++..+...      ..+.+......++|.|.|.+.|..+... +..+.+.
T Consensus       137 ngt~IsgA------q~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~  180 (304)
T 3shs_A          137 GEDVIDTT------QDITIQEFTADKNGVYTVKVWGESEDSAASASTKIM  180 (304)
T ss_dssp             TTEEEESS------SEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEE
T ss_pred             CCeEccCc------cccceeeEEecCCeEEEEEEEcCCCCcccccceEEE
Confidence            99765332      3556666777889999999999877442 4444443

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=98.94  E-value=1e-08  Score=63.40  Aligned_cols=76  Identities=18%  Similarity=0.260  Sum_probs=55.0

Q ss_pred             EEEecCCcEEEEeEeccCCCC---cEEEEeCCeeC-----------C-------CCcEEE-------eCcEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPVP---NITWTRKNNNL-----------P-------GGEYSY-------SGNSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p---~~~W~~~~~~~-----------~-------~~~~~~-------~~~~l~i~~~~~~  159 (187)
                      .....|+++.|.|.....+.+   .+.|++.+...           .       ..+...       ...+|.|.+++.+
T Consensus        15 v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~v~~~   94 (125)
T 4gos_A           15 SAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNVQLT   94 (125)
T ss_dssp             EEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESSCCGG
T ss_pred             EEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECCCChH
Confidence            456789999999998644332   58999865311           0       011111       1247999999999


Q ss_pred             CCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        160 SAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       160 d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      |+|.|.|.+.|..|.. ...+.|.|
T Consensus        95 D~G~Y~C~v~~~~g~~-~~~v~LkV  118 (125)
T 4gos_A           95 DAGTYKCYIITSKGKG-NANLEYKT  118 (125)
T ss_dssp             GCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             HCEEEEEEEEeCCCeE-EEEEEEEE
Confidence            9999999999998887 58888877

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.94  E-value=3.6e-09  Score=70.93  Aligned_cols=72  Identities=10%  Similarity=0.144  Sum_probs=55.7

Q ss_pred             ecCCcEEEEeEeccC-CCCcEEEEeCCeeCCCCc-EEE--eC--cEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        111 KKGYSVTLECKADGN-PVPNITWTRKNNNLPGGE-YSY--SG--NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~-p~p~~~W~~~~~~~~~~~-~~~--~~--~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      ..++.+.|.|.+.+. |.+.+.|++++..+.... ...  ..  ..|.|.++..+|.|.|.|.+.|..|.. ...+.|.
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~-~~~~~l~   92 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH-QKTVDLS   92 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEEC
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcce-EEEEEEE
Confidence            367888999999886 478999999998876542 221  22  359999999999999999999988766 3555553

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=98.93  E-value=1e-09  Score=74.19  Aligned_cols=109  Identities=15%  Similarity=0.172  Sum_probs=65.6

Q ss_pred             EEEEEecccceeEEeecccee--eEEEEE---EEEcCCeeEEecCCceEEEecCCcEEEEeEeccC-CC-CcEEEEeCCe
Q psy15738         65 ILAMEKEEEERKKKKKRKKRK--KKKKKK---EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGN-PV-PNITWTRKNN  137 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~~~--~~~~~l---~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-p~~~W~~~~~  137 (187)
                      |..++..|.|.|+|.+.....  .....+   .+..+|.+...... ...+..|+.+.|.|.+.|. |+ +.+.|+++|.
T Consensus        70 I~~~~~~D~g~Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~-~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~  148 (214)
T 1ow0_A           70 GCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPP-SEELALNELVTLTCLARGFSPKDVLVRWLQGSQ  148 (214)
T ss_dssp             TTHHHHHHTCEEEEEECCSSCSSCEEEEEECCSSCCCCEEEEECCC-TTTTTSSSEEEEEEEEEEESSSCCEEEEEETTE
T ss_pred             EeHHHcCCCCeEEEEEecCCCCCceeEeeccCCCCCCCEEEecCCC-HHHhccCCceEEEEEEeeeECCCcEEEEEECCE
Confidence            455666799999995543322  122233   23456665433221 1124568889999999986 43 4899999998


Q ss_pred             eCCCCc------EEE---eCcE------EEEecCCCCCCeEEEEEEecCCCC
Q psy15738        138 NLPGGE------YSY---SGNS------LTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       138 ~~~~~~------~~~---~~~~------l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      .+....      ...   ..++      |.+......+.|.|.|.|.|....
T Consensus       149 ~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~  200 (214)
T 1ow0_A          149 ELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  200 (214)
T ss_dssp             ECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred             ECCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence            875442      111   2222      333333334479999999997654

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=98.93  E-value=1.6e-08  Score=62.28  Aligned_cols=80  Identities=25%  Similarity=0.400  Sum_probs=55.2

Q ss_pred             CceEEEecCCcEEEEeEeccCCCC---cEEEEeCCeeCCC-------------------CcEEE-------eCcEEEEec
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVP---NITWTRKNNNLPG-------------------GEYSY-------SGNSLTVRH  155 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p---~~~W~~~~~~~~~-------------------~~~~~-------~~~~l~i~~  155 (187)
                      +..+.+..|+++.|.|...+.+..   .+.|++.......                   ++...       ...+|.|.+
T Consensus         7 p~~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~   86 (123)
T 4gjt_B            7 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN   86 (123)
T ss_dssp             CSEEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEES
T ss_pred             CCEEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEECC
Confidence            345678899999999998766543   4789986431110                   11111       123699999


Q ss_pred             CCCCCCeEEEEEEec-CCCCcceeeEEEEEE
Q psy15738        156 TNRHSAGIYLCVANN-MVGSSAAASIALHVL  185 (187)
Q Consensus       156 ~~~~d~g~y~C~~~n-~~g~~~s~~~~l~v~  185 (187)
                      ++.+|+|.|.|.+.+ +.|.. ...+.|.|+
T Consensus        87 v~~~DsG~Y~C~v~t~~~g~~-~~~~~L~Vl  116 (123)
T 4gjt_B           87 AVQADEGEYECRVSTFPAGSF-QARLRLRVL  116 (123)
T ss_dssp             CCSSSCSEEEEEEEESSSCEE-EEEEEEEC-
T ss_pred             CChHHCEEEEEEEEECCCCeE-EeEEEEEEE
Confidence            999999999999876 45655 577888874

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.91  E-value=3e-09  Score=70.57  Aligned_cols=71  Identities=17%  Similarity=0.244  Sum_probs=57.1

Q ss_pred             CceEEEecCCcEEEEeE-eccCCC-CcEEEEeCCeeCC---CCcEEE--eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        105 AGKVEVKKGYSVTLECK-ADGNPV-PNITWTRKNNNLP---GGEYSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~-~~g~p~-p~~~W~~~~~~~~---~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +....+.+|+.+.|.|. +.+.|. +.+.|++++..+.   ......  ..+.|.|.++..+|.|.|.|.+.|..+..
T Consensus        15 ~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~   92 (201)
T 3s97_C           15 RPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITK   92 (201)
T ss_dssp             CCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTE
T ss_pred             CceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCc
Confidence            34577899999999999 888898 9999999987653   222222  35689999999999999999999976554

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.91  E-value=1.1e-08  Score=61.91  Aligned_cols=68  Identities=22%  Similarity=0.517  Sum_probs=49.9

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-----------CCCcEEE-eC------cEEEEecCCCCCCeEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-----------PGGEYSY-SG------NSLTVRHTNRHSAGIY  164 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-----------~~~~~~~-~~------~~l~i~~~~~~d~g~y  164 (187)
                      +....+.+|+++.|.|.+.+.+ +.+.|++...  ..           ..++... ..      ..|.|.++..+|+|.|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~DsG~Y   86 (113)
T 1h5b_A            8 PSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTY   86 (113)
T ss_dssp             CSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEE
T ss_pred             CCEEEEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChhhCEEE
Confidence            4456788999999999998754 6899998541  11           1122221 11      2799999999999999


Q ss_pred             EEEEecCCC
Q psy15738        165 LCVANNMVG  173 (187)
Q Consensus       165 ~C~~~n~~g  173 (187)
                      .|.+.|..|
T Consensus        87 ~C~~~n~~~   95 (113)
T 1h5b_A           87 FCAAEASSG   95 (113)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEecCCC
Confidence            999999765

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.90  E-value=1e-08  Score=69.08  Aligned_cols=79  Identities=16%  Similarity=0.343  Sum_probs=55.9

Q ss_pred             eEEEecCCcEEEEeEeccC-CCCcEEEEeCCe--eC------C-----------CCcEEE----eCcEEEEecCCCCCCe
Q psy15738        107 KVEVKKGYSVTLECKADGN-PVPNITWTRKNN--NL------P-----------GGEYSY----SGNSLTVRHTNRHSAG  162 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~-p~p~~~W~~~~~--~~------~-----------~~~~~~----~~~~l~i~~~~~~d~g  162 (187)
                      ...+.+|+.+.|.|.+.+. |.+.+.|++...  ..      .           ..+...    ....|.|.++..+|+|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   88 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEA   88 (218)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCE
Confidence            5678899999999999998 889999998321  00      0           012211    1246999999999999


Q ss_pred             EEEEEEecCCCC----cceeeEEEEEE
Q psy15738        163 IYLCVANNMVGS----SAAASIALHVL  185 (187)
Q Consensus       163 ~y~C~~~n~~g~----~~s~~~~l~v~  185 (187)
                      .|.|.+.|..|.    .....+.|.|.
T Consensus        89 ~Y~C~~~~~~~~~~~~~~~~~~~l~V~  115 (218)
T 3s96_B           89 IYICGVGDTIKEQFVYVFGGGTKVTVL  115 (218)
T ss_dssp             EEEEEEEEEETTEEEEEECCCEEEEEE
T ss_pred             EEEEEEecCCCCceeEEEcCcEEEEEe
Confidence            999999998761    11334555554

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=98.90  E-value=1.3e-08  Score=61.06  Aligned_cols=67  Identities=21%  Similarity=0.401  Sum_probs=49.9

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCC--ee---C----------CCCcEEEe----CcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NN---L----------PGGEYSYS----GNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~---~----------~~~~~~~~----~~~l~i~~~~~~d~g~y~  165 (187)
                      +....+.+|+++.|.|.+.+.+.+.+.|++..  ..   +          ...+....    ...|.|.++..+|+|.|.
T Consensus         8 p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~   87 (107)
T 1i8k_A            8 PASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYY   87 (107)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEecCCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEE
Confidence            34567889999999999988888889999853  11   1          01222211    136999999999999999


Q ss_pred             EEEecC
Q psy15738        166 CVANNM  171 (187)
Q Consensus       166 C~~~n~  171 (187)
                      |.+.+.
T Consensus        88 C~~~~~   93 (107)
T 1i8k_A           88 CLQSFN   93 (107)
T ss_dssp             EEECSS
T ss_pred             EEEeeC
Confidence            999875

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=98.89  E-value=1.5e-08  Score=60.87  Aligned_cols=67  Identities=21%  Similarity=0.326  Sum_probs=49.6

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--e---C----------CCCcEEEe----CcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--N---L----------PGGEYSYS----GNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~---~----------~~~~~~~~----~~~l~i~~~~~~d~g~y~  165 (187)
                      +....+.+|+++.|.|.+.+.+.+.+.|++...  .   +          ...+....    ...|.|.++..+|+|.|.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~   87 (108)
T 1qfw_M            8 PKSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSATDFTLTISSVQAEDFADYH   87 (108)
T ss_dssp             CSCEECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSSEEEEEESSCCTTCCSEEE
T ss_pred             CCeEEEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCCEEEEEECCCChhhCEEEE
Confidence            334678899999999999888878899998541  1   0          01122211    236999999999999999


Q ss_pred             EEEecC
Q psy15738        166 CVANNM  171 (187)
Q Consensus       166 C~~~n~  171 (187)
                      |.+.+.
T Consensus        88 C~~~~~   93 (108)
T 1qfw_M           88 CGQTYN   93 (108)
T ss_dssp             EEECSS
T ss_pred             EEEccC
Confidence            999985

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.89  E-value=1.2e-08  Score=70.12  Aligned_cols=80  Identities=20%  Similarity=0.345  Sum_probs=56.5

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-------------CCCcEEE--e--CcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-------------PGGEYSY--S--GNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-------------~~~~~~~--~--~~~l~i~~~~~~d~g~y~  165 (187)
                      +....+.+|+++.|.|.+.+.|.+.+.|+++..  ..             ...+...  .  ...|.|.++..+|+|.|.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   87 (242)
T 2znx_A            8 PATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF   87 (242)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEE
Confidence            445678899999999999999989999998531  11             0122221  1  237999999999999999


Q ss_pred             EEEecCCCCcceeeEEEEE
Q psy15738        166 CVANNMVGSSAAASIALHV  184 (187)
Q Consensus       166 C~~~n~~g~~~s~~~~l~v  184 (187)
                      |.+.|..+........|.|
T Consensus        88 C~~~n~~~~~~~~~~~L~V  106 (242)
T 2znx_A           88 CQQSNSXPYTFGGGTKLEI  106 (242)
T ss_dssp             EEECSSSSCEECCCEEEEE
T ss_pred             EeEecCCceEECCCEEEEE
Confidence            9999975432223344544

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.89  E-value=9.7e-09  Score=68.95  Aligned_cols=80  Identities=19%  Similarity=0.324  Sum_probs=56.1

Q ss_pred             CceEEEecCCcEEEEeEeccCC---CCcEEEEeCC--eeC-------------CCCcEEEe----CcEEEEecCCCCCCe
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP---VPNITWTRKN--NNL-------------PGGEYSYS----GNSLTVRHTNRHSAG  162 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p---~p~~~W~~~~--~~~-------------~~~~~~~~----~~~l~i~~~~~~d~g  162 (187)
                      +....+.+|+.+.|.|.+.+.|   .+.+.|++++  ..+             ...+....    ...|.|.++..+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            4456788999999999999887   4789999863  211             01222211    237999999999999


Q ss_pred             EEEEEEecCCCCcceeeEEEEE
Q psy15738        163 IYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       163 ~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      .|.|.+.|..+........|.|
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V  108 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTV  108 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEE
T ss_pred             EEEEEEecCchhhcCCCeEEEE
Confidence            9999999987643223344444

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.88  E-value=3.1e-09  Score=81.91  Aligned_cols=80  Identities=19%  Similarity=0.354  Sum_probs=62.7

Q ss_pred             eEEEecCCcEEEEeEe-ccCCCCcEEEEeCCeeCC-------------C-CcEEEeCcEEEEecCCCCCCeEEEEEEecC
Q psy15738        107 KVEVKKGYSVTLECKA-DGNPVPNITWTRKNNNLP-------------G-GEYSYSGNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~-------------~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      ...+..|+++.|.|.+ .+.|.+.+.|++++..+.             . .......++|.|.+++.+|+|.|.|.+.|.
T Consensus       375 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~  454 (581)
T 3o3u_N          375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNR  454 (581)
T ss_dssp             EEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEECT
T ss_pred             ccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEcC
Confidence            3567889999999998 788889999999875321             1 112223468999999999999999999999


Q ss_pred             CCCcceeeEEEEEEe
Q psy15738        172 VGSSAAASIALHVLC  186 (187)
Q Consensus       172 ~g~~~s~~~~l~v~~  186 (187)
                      .|...+..+.|.|..
T Consensus       455 ~~~~~~~~~~l~V~~  469 (581)
T 3o3u_N          455 NGKETKSNYRVRVYQ  469 (581)
T ss_dssp             TSCEEEEEEEEEEEB
T ss_pred             CCceeEEEEEEEEEc
Confidence            887745677887754

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=98.88  E-value=2.7e-08  Score=60.91  Aligned_cols=67  Identities=22%  Similarity=0.428  Sum_probs=50.2

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--e---C----------CCCcEEEe----CcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--N---L----------PGGEYSYS----GNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~---~----------~~~~~~~~----~~~l~i~~~~~~d~g~y~  165 (187)
                      +....+.+|+++.|.|.+.+.+.+.+.|++...  .   +          ...+....    ...|.|.++..+|+|.|.
T Consensus        10 p~~v~v~~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~   89 (119)
T 2e27_L           10 PSSLSASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYSFSISNLEPEDAATYY   89 (119)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred             CCeEEEeCCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEEEEECCCChHHCEEEE
Confidence            445678899999999999888888999998531  1   0          01222211    237999999999999999


Q ss_pred             EEEecC
Q psy15738        166 CVANNM  171 (187)
Q Consensus       166 C~~~n~  171 (187)
                      |.+.|.
T Consensus        90 C~~~~~   95 (119)
T 2e27_L           90 CLQYDN   95 (119)
T ss_dssp             EEECGG
T ss_pred             EEEccC
Confidence            999875

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.88  E-value=4.3e-09  Score=70.12  Aligned_cols=78  Identities=18%  Similarity=0.268  Sum_probs=57.6

Q ss_pred             EEEecCCcEEEEeEec----cCCCCcEEEEeCCeeCC-------------CCcEEE---eCcEEEEecCCCCCCeEEEEE
Q psy15738        108 VEVKKGYSVTLECKAD----GNPVPNITWTRKNNNLP-------------GGEYSY---SGNSLTVRHTNRHSAGIYLCV  167 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~----g~p~p~~~W~~~~~~~~-------------~~~~~~---~~~~l~i~~~~~~d~g~y~C~  167 (187)
                      +.+..|+.+.|.|.+.    +.|.+.+.|++++..+.             ..+...   ....|.|.++..+|.|.|.|.
T Consensus         4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~   83 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (201)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEEE
Confidence            5678999999999985    34667899999987641             111111   236899999999999999999


Q ss_pred             EecCCCCcc----eeeEEEEEE
Q psy15738        168 ANNMVGSSA----AASIALHVL  185 (187)
Q Consensus       168 ~~n~~g~~~----s~~~~l~v~  185 (187)
                      +.|..|...    ...+.|.|.
T Consensus        84 ~~~~~g~~~~~~~~~~~~l~V~  105 (201)
T 1dr9_A           84 VLKYEKDAFKREHLAEVTLSVK  105 (201)
T ss_dssp             EEECCTTSCEEEEEEEEEEEEE
T ss_pred             EEcCCCCccccccccEEEEEEc
Confidence            999877653    245566654

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.88  E-value=1e-08  Score=71.91  Aligned_cols=80  Identities=16%  Similarity=0.336  Sum_probs=56.8

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCee-----C----------CCCcEEEe----CcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNN-----L----------PGGEYSYS----GNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~-----~----------~~~~~~~~----~~~l~i~~~~~~d~g~y~  165 (187)
                      +....+.+|+++.|.|.+.+.|.+.+.|++++..     +          ...++...    ...|.|.++..+|+|.|.
T Consensus        19 p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~   98 (276)
T 3auv_A           19 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY   98 (276)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEE
Confidence            4456788999999999999999899999986421     0          01222211    137999999999999999


Q ss_pred             EEEecCCCCcceeeEEEEE
Q psy15738        166 CVANNMVGSSAAASIALHV  184 (187)
Q Consensus       166 C~~~n~~g~~~s~~~~l~v  184 (187)
                      |.+.|..+...+....|.|
T Consensus        99 C~~~n~~~~~~~~~~~l~V  117 (276)
T 3auv_A           99 CQQHYTTPPTFGCGTKVEI  117 (276)
T ss_dssp             EEECSSSSCCCCCCEEEEC
T ss_pred             EEEecCCcccccCCEEEEE
Confidence            9999976542223344444

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.87  E-value=1.3e-08  Score=63.07  Aligned_cols=77  Identities=23%  Similarity=0.343  Sum_probs=53.7

Q ss_pred             eEEEecCCcEEEEeEeccCCCC----cEEEEeCC----------------eeCCC-----CcEEEe--------------
Q psy15738        107 KVEVKKGYSVTLECKADGNPVP----NITWTRKN----------------NNLPG-----GEYSYS--------------  147 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p----~~~W~~~~----------------~~~~~-----~~~~~~--------------  147 (187)
                      ...+..|+++.|.|...+.+.+    .+.|++..                .....     ++....              
T Consensus        11 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~~~~   90 (128)
T 3r0n_A           11 EVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAEL   90 (128)
T ss_dssp             EEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCCCBC
T ss_pred             eEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccccCC
Confidence            4567889999999999876655    78999962                12211     122111              


Q ss_pred             -CcEEEEecCCCCCCeEEEEEEec-CCCCcceeeEEEEE
Q psy15738        148 -GNSLTVRHTNRHSAGIYLCVANN-MVGSSAAASIALHV  184 (187)
Q Consensus       148 -~~~l~i~~~~~~d~g~y~C~~~n-~~g~~~s~~~~l~v  184 (187)
                       ...|.|.++..+|+|.|.|.+.+ ..|.. +..+.|.|
T Consensus        91 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~-~~~~~L~V  128 (128)
T 3r0n_A           91 QDATLALHGLTVEDEGNYTCEFATFPKGSV-RGMTWLRV  128 (128)
T ss_dssp             SBCCEEECSCCGGGCEEEEEEEEEETTEEE-EEEEEEEC
T ss_pred             CCeEEEEccCCchhCeEEEEEEEeCCCCCc-ccEEEEEC
Confidence             23899999999999999998775 44655 56666654

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=98.86  E-value=1.6e-08  Score=60.96  Aligned_cols=66  Identities=21%  Similarity=0.334  Sum_probs=48.0

Q ss_pred             eEEEecCCcEEEEeEeccCC-CCcEEEEeCCee--CC------------CCcEEEe------CcEEEEecCCCCCCeEEE
Q psy15738        107 KVEVKKGYSVTLECKADGNP-VPNITWTRKNNN--LP------------GGEYSYS------GNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p-~p~~~W~~~~~~--~~------------~~~~~~~------~~~l~i~~~~~~d~g~y~  165 (187)
                      ...+.+|++++|.|...+.. .+.+.|++....  ..            .++....      ...|.|.++..+|+|.|.
T Consensus         5 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~   84 (110)
T 2q87_A            5 TVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTYW   84 (110)
T ss_dssp             EEEECTTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGGCEEEE
T ss_pred             EEEEeCCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHHCEEEE
Confidence            45688999999999987653 367999986421  10            1122211      137999999999999999


Q ss_pred             EEEecCC
Q psy15738        166 CVANNMV  172 (187)
Q Consensus       166 C~~~n~~  172 (187)
                      |.+.+..
T Consensus        85 C~~~~~~   91 (110)
T 2q87_A           85 CGVDTPW   91 (110)
T ss_dssp             EEEECTT
T ss_pred             EEEecCc
Confidence            9999885

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.86  E-value=3e-08  Score=66.86  Aligned_cols=79  Identities=20%  Similarity=0.339  Sum_probs=56.4

Q ss_pred             ceEEEecCCcEEEEeEeccCCC-----CcEEEEeCCeeC---------C-------CCcEEEe-------CcEEEEecCC
Q psy15738        106 GKVEVKKGYSVTLECKADGNPV-----PNITWTRKNNNL---------P-------GGEYSYS-------GNSLTVRHTN  157 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~-----p~~~W~~~~~~~---------~-------~~~~~~~-------~~~l~i~~~~  157 (187)
                      ....+..|+.+.|.|.+.+.|.     +.+.|++++..+         .       ..+....       ...|.|.++.
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   88 (222)
T 3sbw_C            9 DLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVK   88 (222)
T ss_dssp             SEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCC
T ss_pred             ccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcc
Confidence            3467889999999999887763     379999975211         0       0121111       1379999999


Q ss_pred             CCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        158 RHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       158 ~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .+|.|.|.|.+.| .|.. +..+.|.|..
T Consensus        89 ~~D~G~Y~C~~~~-~~~~-~~~~~l~V~~  115 (222)
T 3sbw_C           89 LQDAGVYRCMISY-GGAD-YKRITVKVNA  115 (222)
T ss_dssp             GGGCEEEEEEEES-SSEE-EEEEEEEEEB
T ss_pred             cccCeEEEEEEEe-CCCc-eeEEEEEEEC
Confidence            9999999999999 4444 5677777753

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.85  E-value=3e-08  Score=60.86  Aligned_cols=82  Identities=17%  Similarity=0.272  Sum_probs=54.8

Q ss_pred             CceEEEecCCcEEEEeEeccC----CCCcEEEEeCCee------C----C-----------CCcEEEe------CcEEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGN----PVPNITWTRKNNN------L----P-----------GGEYSYS------GNSLTV  153 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~----p~p~~~W~~~~~~------~----~-----------~~~~~~~------~~~l~i  153 (187)
                      +....+..|+++.|.|.....    +.+.+.|++.+..      +    .           .++....      ..+|.|
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (124)
T 1neu_A            6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVI   85 (124)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEE
T ss_pred             CCeEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEEE
Confidence            345678899999999998543    4567999985420      0    0           1122221      257999


Q ss_pred             ecCCCCCCeEEEEEEecCCCCc-ceeeEEEEEEe
Q psy15738        154 RHTNRHSAGIYLCVANNMVGSS-AAASIALHVLC  186 (187)
Q Consensus       154 ~~~~~~d~g~y~C~~~n~~g~~-~s~~~~l~v~~  186 (187)
                      .++..+|+|.|.|.+.+..+.. .+..+.|.|..
T Consensus        86 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~  119 (124)
T 1neu_A           86 HNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFE  119 (124)
T ss_dssp             CSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC
T ss_pred             ccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEec
Confidence            9999999999999999987652 24677887754

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=98.85  E-value=4.1e-08  Score=59.37  Aligned_cols=80  Identities=16%  Similarity=0.179  Sum_probs=56.4

Q ss_pred             CceEEEecCCcEEEEeEeccCCC-CcEEEEeCCee-----C---C-------CCcEEEe------CcEEEEecCCCCCCe
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPV-PNITWTRKNNN-----L---P-------GGEYSYS------GNSLTVRHTNRHSAG  162 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~-p~~~W~~~~~~-----~---~-------~~~~~~~------~~~l~i~~~~~~d~g  162 (187)
                      +....+.+|+++.|.|...+... ..+.|++....     +   .       .++....      ...|.|.++..+|+|
T Consensus         8 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~DsG   87 (113)
T 1zox_A            8 PEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAG   87 (113)
T ss_dssp             CSEEEEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             CCEEEEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHHCE
Confidence            34567889999999999876543 35999996521     1   0       1112111      137999999999999


Q ss_pred             EEEEEEecCCCCcceeeEEEEEE
Q psy15738        163 IYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       163 ~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      .|.|.+.+..... ...+.|.|.
T Consensus        88 ~Y~C~v~~~~~~~-~~~v~L~V~  109 (113)
T 1zox_A           88 IYWCGITKGGLDP-MFKVTVNIG  109 (113)
T ss_dssp             EEEEEECCSSSCC-EEEEEEEEE
T ss_pred             EEEEeeEcCCCCc-cEEEEEEEE
Confidence            9999999874333 577888775

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.85  E-value=2.1e-08  Score=68.39  Aligned_cols=80  Identities=14%  Similarity=0.299  Sum_probs=57.1

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-------------CCCcEEE----eCcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-------------PGGEYSY----SGNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-------------~~~~~~~----~~~~l~i~~~~~~d~g~y~  165 (187)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++...  ..             ...++..    ....|.|.+++.+|+|.|.
T Consensus        31 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~  110 (237)
T 3sob_L           31 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY  110 (237)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEE
Confidence            445678899999999999998889999998431  00             0122221    2346999999999999999


Q ss_pred             EEEecCCCCcceeeEEEEE
Q psy15738        166 CVANNMVGSSAAASIALHV  184 (187)
Q Consensus       166 C~~~n~~g~~~s~~~~l~v  184 (187)
                      |.+.|..+........|.|
T Consensus       111 C~~~~~~~~~~~~~~~l~V  129 (237)
T 3sob_L          111 CQQSYTTPPTFGQGTKVEI  129 (237)
T ss_dssp             EEECSSSSCEECCCEEEEE
T ss_pred             EeeccCCceEEcCcEEEEE
Confidence            9999877543233445554

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=98.85  E-value=4.3e-09  Score=64.71  Aligned_cols=80  Identities=19%  Similarity=0.270  Sum_probs=56.7

Q ss_pred             eEEEecCCcEEEEeEe-ccCCCCcEEEEeCCe-eC----------C----CCcEEE--eCcEEEEecCCCCCCeEEEEEE
Q psy15738        107 KVEVKKGYSVTLECKA-DGNPVPNITWTRKNN-NL----------P----GGEYSY--SGNSLTVRHTNRHSAGIYLCVA  168 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~~-~~----------~----~~~~~~--~~~~l~i~~~~~~d~g~y~C~~  168 (187)
                      ...+.+|++++|.|.. .......+.|++... .+          .    .++...  .+..|.|.+++.+|+|.|.|.+
T Consensus        13 pv~~~~G~~VtL~c~~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~~~~sL~I~nv~~~DsG~Y~c~v   92 (121)
T 2edo_A           13 HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRV   92 (121)
T ss_dssp             CCEEETTSCEEECCSSCCCSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECTTTCCEEESSCCGGGCSEEEEEE
T ss_pred             EEEEEeCCCEEEeCCCCCCCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeCCCceEEEeCCCHHHCeEEEEEE
Confidence            4578899999999986 333345799998753 10          0    011122  3468999999999999999999


Q ss_pred             ecCCCCcceeeEEEEEEe
Q psy15738        169 NNMVGSSAAASIALHVLC  186 (187)
Q Consensus       169 ~n~~g~~~s~~~~l~v~~  186 (187)
                      .+..+......+.|.|..
T Consensus        93 ~~~~~~~~~~~~~L~V~~  110 (121)
T 2edo_A           93 LKKTGNEQEWKIKLQVLD  110 (121)
T ss_dssp             EETTTEEEECCEECEEEC
T ss_pred             EcCCCcEEEEEEEEEEEC
Confidence            977654445677887753

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.84  E-value=1.6e-08  Score=69.69  Aligned_cols=76  Identities=16%  Similarity=0.104  Sum_probs=55.6

Q ss_pred             EEecCCcEEEEeEeccCCCCcEEEEeCCeeCCC---Cc-EEEeCcEEEEecCCCCCCeEEEEEEecCCCC-cceeeEEEE
Q psy15738        109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPG---GE-YSYSGNSLTVRHTNRHSAGIYLCVANNMVGS-SAAASIALH  183 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~---~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~-~~s~~~~l~  183 (187)
                      .+.+|+.++|.|.+.+ +.+.+.|+|++..+..   .. .......|.|.+++.+|+|.|.|.+.|..+. ..+..+.|.
T Consensus        17 ~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~   95 (242)
T 1p6f_A           17 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV   95 (242)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred             ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEE
Confidence            6789999999999875 4568999999976421   00 0113467999999999999999999886432 225666776


Q ss_pred             EE
Q psy15738        184 VL  185 (187)
Q Consensus       184 v~  185 (187)
                      |.
T Consensus        96 V~   97 (242)
T 1p6f_A           96 VT   97 (242)
T ss_dssp             EE
T ss_pred             ee
Confidence            64

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.84  E-value=5.8e-09  Score=68.54  Aligned_cols=67  Identities=21%  Similarity=0.342  Sum_probs=51.4

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCee--CC-------------CCcEEEe-------CcEEEEecCCCCCCeEE
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNN--LP-------------GGEYSYS-------GNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~--~~-------------~~~~~~~-------~~~l~i~~~~~~d~g~y  164 (187)
                      ...+.+|+.+.|.|.+.+.|.+.+.|++++..  +.             ..+....       ...|.|.++..+|+|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            35678999999999999989999999999852  11             1111111       23599999999999999


Q ss_pred             EEEEecCCC
Q psy15738        165 LCVANNMVG  173 (187)
Q Consensus       165 ~C~~~n~~g  173 (187)
                      .|.+.|..+
T Consensus        84 ~C~~~~~~~   92 (184)
T 2ny1_B           84 ICEVEDQKE   92 (184)
T ss_dssp             EEEETTEEE
T ss_pred             EEEEEcCCC
Confidence            999998643

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=98.84  E-value=4.1e-09  Score=63.34  Aligned_cols=35  Identities=9%  Similarity=-0.041  Sum_probs=25.9

Q ss_pred             eeEEEEEecccceeEEe--eccceeeEEEEEEEEcCC
Q psy15738         63 SYILAMEKEEEERKKKK--KRKKRKKKKKKKEKRIPP   97 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~--~~~~~~~~~~~l~v~~~p   97 (187)
                      +.|..+..+|.|.|+|.  +..+..+.++.|.|..+|
T Consensus        71 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           71 LLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred             EEEecCChhhCEEEEEEEEECCCEEEEEEEEEEEcCC
Confidence            44778889999999994  445667778888888765

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.83  E-value=2.4e-08  Score=68.98  Aligned_cols=80  Identities=16%  Similarity=0.328  Sum_probs=56.0

Q ss_pred             CceEEEecCCcEEEEeEeccCC-----CCcEEEEeCCe--eC-------------CCCcEEEe----CcEEEEecCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP-----VPNITWTRKNN--NL-------------PGGEYSYS----GNSLTVRHTNRHS  160 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p-----~p~~~W~~~~~--~~-------------~~~~~~~~----~~~l~i~~~~~~d  160 (187)
                      +....+.+|+++.|.|.+.+.|     .+.+.|++++.  ..             ...++...    ...|.|.++..+|
T Consensus        41 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  120 (252)
T 3bkj_L           41 PLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAED  120 (252)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCccc
Confidence            4456788999999999999887     58899998641  10             01222211    1379999999999


Q ss_pred             CeEEEEEEecCCCCcceeeEEEEE
Q psy15738        161 AGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       161 ~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      .|.|.|.+.|..+........|.|
T Consensus       121 ~G~Y~C~~~~~~~~~~~~~~~l~V  144 (252)
T 3bkj_L          121 LGVYYCFQASLVPLTFGAGTKLEL  144 (252)
T ss_dssp             CEEEEEEECSBSSCEECCCEEEEE
T ss_pred             CEEEEEEEEcCCccEECCCEEEEE
Confidence            999999999876533223344544

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.83  E-value=4e-08  Score=59.62  Aligned_cols=79  Identities=22%  Similarity=0.331  Sum_probs=54.1

Q ss_pred             ceEEEecCCcEEEEeEecc-CCCCcEEEEeCCeeC------------------CCCcEEE------eCcEEEEecCCCCC
Q psy15738        106 GKVEVKKGYSVTLECKADG-NPVPNITWTRKNNNL------------------PGGEYSY------SGNSLTVRHTNRHS  160 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~------------------~~~~~~~------~~~~l~i~~~~~~d  160 (187)
                      ....+.+|+++.|.|...+ .....+.|++.....                  ...+...      ....|.|.++..+|
T Consensus         5 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D   84 (116)
T 2or8_A            5 VEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESD   84 (116)
T ss_dssp             EEEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGG
T ss_pred             ceEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCccc
Confidence            3567889999999999865 345679999976210                  0111211      12479999999999


Q ss_pred             CeEEEEEEecCCCCcc-eeeEEEEE
Q psy15738        161 AGIYLCVANNMVGSSA-AASIALHV  184 (187)
Q Consensus       161 ~g~y~C~~~n~~g~~~-s~~~~l~v  184 (187)
                      +|.|.|.+.+..+... ...+.|.|
T Consensus        85 sG~Y~C~v~~~~~~~~~~~~~~l~V  109 (116)
T 2or8_A           85 SGLYCCRVEIPGWFNDQKVTFSLQV  109 (116)
T ss_dssp             CEEEEEEECCSSTTCCEEEEEEEEE
T ss_pred             CEEEEEEEEcCCcccccEEEEEEEE
Confidence            9999999998754431 34555555

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.83  E-value=7.2e-08  Score=60.35  Aligned_cols=81  Identities=26%  Similarity=0.359  Sum_probs=55.3

Q ss_pred             CceEEEecCCcEEEEeEeccC-CCCcEEEEeCCee----C---CC---CcEEE---------eCcEEEEecCCCCCCeEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGN-PVPNITWTRKNNN----L---PG---GEYSY---------SGNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~-p~p~~~W~~~~~~----~---~~---~~~~~---------~~~~l~i~~~~~~d~g~y  164 (187)
                      +....+.+|+++.|.|.+.+. +.+.+.|++.+..    +   ..   .+...         ....|.|.++..+|+|.|
T Consensus        15 p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y   94 (136)
T 2d9c_A           15 EKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTY   94 (136)
T ss_dssp             CSEEEEETTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTTTCEEE
T ss_pred             CcEEEEcCCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHHHCEEE
Confidence            445678899999999999776 5678999997621    0   00   01100         135799999999999999


Q ss_pred             EEEEecCCCC--cc---eeeEEEEEE
Q psy15738        165 LCVANNMVGS--SA---AASIALHVL  185 (187)
Q Consensus       165 ~C~~~n~~g~--~~---s~~~~l~v~  185 (187)
                      .|.+.+..+.  ..   .....|.|.
T Consensus        95 ~C~~~~~~~~~~~~~~~g~~t~L~V~  120 (136)
T 2d9c_A           95 YCVKFRKGSPDDVEFKSGAGTELSVR  120 (136)
T ss_dssp             EEEEEECCSSSCEEEEECCCEEEEEE
T ss_pred             EEEEEeCCCCcccceeeCCCeEEEEE
Confidence            9999875431  11   134566664

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.83  E-value=1.7e-08  Score=67.59  Aligned_cols=78  Identities=22%  Similarity=0.345  Sum_probs=55.9

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCc---EEEEeCCeeCCCCc-------------------EEE-------eCcEEEEec
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPN---ITWTRKNNNLPGGE-------------------YSY-------SGNSLTVRH  155 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~---~~W~~~~~~~~~~~-------------------~~~-------~~~~l~i~~  155 (187)
                      +..+.+..|+.+.|.|.+.+.|.+.   +.|++++.......                   ...       ...+|.|.+
T Consensus         6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   85 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN   85 (218)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred             CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence            4457788999999999999887664   89999875432111                   000       124699999


Q ss_pred             CCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        156 TNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       156 ~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      ++.+|.|.|.|.+.+..+........+
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~  112 (218)
T 4frw_A           86 AVQADEGEYECRVSTFPAGSFQARLRL  112 (218)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEE
T ss_pred             ccHHHCCceeEEEEeccCceeeeEEEE
Confidence            999999999999998766553333333

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=98.83  E-value=3.1e-08  Score=59.60  Aligned_cols=68  Identities=16%  Similarity=0.348  Sum_probs=50.3

Q ss_pred             EEEecCCcEEEEeEeccCCCC-----cEEEEeCCee-C----C------------CCcEEE--eCcEEEEecCCCCCCeE
Q psy15738        108 VEVKKGYSVTLECKADGNPVP-----NITWTRKNNN-L----P------------GGEYSY--SGNSLTVRHTNRHSAGI  163 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p-----~~~W~~~~~~-~----~------------~~~~~~--~~~~l~i~~~~~~d~g~  163 (187)
                      ..+..|+++.|.|...+.|.+     .+.|++.+.. +    .            .++...  .+..|.|.++..+|+|.
T Consensus         4 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T 1ncn_A            4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEECCCEEEEEcCCChHHCEE
Confidence            567889999999998765543     3899997531 0    0            012221  24689999999999999


Q ss_pred             EEEEEecCCCCc
Q psy15738        164 YLCVANNMVGSS  175 (187)
Q Consensus       164 y~C~~~n~~g~~  175 (187)
                      |.|.+.+..+..
T Consensus        84 Y~C~v~~~~~~~   95 (110)
T 1ncn_A           84 YQCIIHHKKPTG   95 (110)
T ss_dssp             EEEEEEEECSSS
T ss_pred             EEEEEEcCCCCc
Confidence            999999987765

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.83  E-value=3.6e-08  Score=67.33  Aligned_cols=68  Identities=21%  Similarity=0.368  Sum_probs=49.1

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCC--ee----------------CCCCcEEE-----eCcEEEEecCCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NN----------------LPGGEYSY-----SGNSLTVRHTNRHSA  161 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~----------------~~~~~~~~-----~~~~l~i~~~~~~d~  161 (187)
                      +....+.+|+++.|.|. .+.|.+.+.|+++.  ..                ....+...     ....|.|.++..+|+
T Consensus         7 p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds   85 (238)
T 2p1y_A            7 PRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQT   85 (238)
T ss_dssp             CSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGC
T ss_pred             ccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccC
Confidence            44567899999999999 78888999999952  10                00122221     134799999999999


Q ss_pred             eEEEEEEecCCC
Q psy15738        162 GIYLCVANNMVG  173 (187)
Q Consensus       162 g~y~C~~~n~~g  173 (187)
                      |.|.|.+.|..|
T Consensus        86 G~Y~C~~~~~~g   97 (238)
T 2p1y_A           86 SVYFCASGDLGQ   97 (238)
T ss_dssp             EEEEEEEEC---
T ss_pred             eeEEEEEEeCCC
Confidence            999999999865

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.82  E-value=7.9e-09  Score=59.23  Aligned_cols=64  Identities=3%  Similarity=-0.016  Sum_probs=39.9

Q ss_pred             CCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeecc
Q psy15738          3 ADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRK   82 (187)
Q Consensus         3 ~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~   82 (187)
                      +.|.|.|+|++||++|..   .+                        ++.+...+. ...+.|..+..+|.|.|+|.+..
T Consensus        21 s~p~p~v~W~k~g~~l~~---~~------------------------~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~n   72 (84)
T 2lu7_A           21 SGPGGPVRWYKDGERLAS---QG------------------------RVQLEQAGA-RQVLRVQGARSGDAGEYLCDAPQ   72 (84)
T ss_dssp             SCCSTTCEEEETTEECCC---CS------------------------SEEEEECSS-CEEEEESSCSSTTCEEEEEECTT
T ss_pred             CCCCcEEEEEECCEEccc---cc------------------------cEEEeecCC-eEEEEecCCCCcccEEEEEEECC
Confidence            568888999999887741   01                        111111111 11233778888999999997644


Q ss_pred             ceeeEEEEEEEEcC
Q psy15738         83 KRKKKKKKKEKRIP   96 (187)
Q Consensus        83 ~~~~~~~~l~v~~~   96 (187)
                        .+..+.|+|..|
T Consensus        73 --~~~~a~l~V~eP   84 (84)
T 2lu7_A           73 --DSRIFLVSVEEP   84 (84)
T ss_dssp             --TCEEEEEEECCC
T ss_pred             --EEEEEEEEEECC
Confidence              456777887654

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=98.82  E-value=8.6e-09  Score=70.18  Aligned_cols=122  Identities=11%  Similarity=0.133  Sum_probs=72.6

Q ss_pred             ccEEEeeccc-cccceeEEEEEecccceeEEeeccce-----------eeEEEEEEEEc----CCeeEEecCCceEEEec
Q psy15738         49 CSYIILATSL-LHYLSYILAMEKEEEERKKKKKRKKR-----------KKKKKKKEKRI----PPRIIYVSGAGKVEVKK  112 (187)
Q Consensus        49 ~~~~~~~~~~-~~~~~~~~~v~~~d~g~y~c~~~~~~-----------~~~~~~l~v~~----~p~~~~~~~~~~~~~~~  112 (187)
                      .|+.+..... ....+.|.+++.+|+|.|.|......           -.....|.|..    +|.+...  +.......
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~--~~~~~~~~  143 (226)
T 3mlr_H           66 GQVTMSVDKSISTAYLQWTTLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPL--APSSKSTS  143 (226)
T ss_dssp             TTBEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEE--EEEECSTT
T ss_pred             CcEEEEecCCCCEEEEEECCCCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEe--cCcccccC
Confidence            4555543321 22335578899999999999543221           12334566642    3333211  11122357


Q ss_pred             CCcEEEEeEeccC-C-CCcEEEEeCCeeCCCCc-----------EEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        113 GYSVTLECKADGN-P-VPNITWTRKNNNLPGGE-----------YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       113 g~~~~l~C~~~g~-p-~p~~~W~~~~~~~~~~~-----------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      |..+.|.|.+.+. | ++.+.|  ++.......           .....+.|.+......| |.|.|.+.|..+..
T Consensus       144 g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~  216 (226)
T 3mlr_H          144 GGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  216 (226)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTE
T ss_pred             CCCEEEEEEEEEEECCCeEEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCc
Confidence            8999999999885 3 346889  443322111           01122478898888888 99999999987654

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=1.2e-08  Score=60.43  Aligned_cols=36  Identities=14%  Similarity=-0.079  Sum_probs=29.8

Q ss_pred             eeEEEEEecccceeEEeeccceeeEEEEEEEEcCCe
Q psy15738         63 SYILAMEKEEEERKKKKKRKKRKKKKKKKEKRIPPR   98 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~~~p~   98 (187)
                      +.|..+..+|.|.|+|.+.....+..+.|.|..+|.
T Consensus        63 L~I~~v~~~D~G~Y~C~a~N~~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           63 LVIANALTEDEGDYVFAPDAYNVTLPAKVHVISGPS   98 (100)
T ss_dssp             EEESSCCGGGCSEEEEEESSSCCCEEEEEEEECCSC
T ss_pred             EEECCCChhhCEEEEEEEcCCCeeEEEEEEEeCCCC
Confidence            347788899999999977766667889999998774

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.81  E-value=4.6e-08  Score=65.65  Aligned_cols=81  Identities=19%  Similarity=0.296  Sum_probs=57.1

Q ss_pred             CceEEEecCCcEEEEeEeccC-------CCCcEEEEeCCeeC------------------CCCcEEEe------CcEEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGN-------PVPNITWTRKNNNL------------------PGGEYSYS------GNSLTV  153 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~-------p~p~~~W~~~~~~~------------------~~~~~~~~------~~~l~i  153 (187)
                      +....+.+|+.+.|.|.+.+.       +.+.+.|++++...                  ..++....      ...|.|
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I   86 (214)
T 2zg1_A            7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSI   86 (214)
T ss_dssp             CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEE
Confidence            445678899999999998754       46789999986421                  01222221      237999


Q ss_pred             ecCCCCCCeEEEEEEecCCCCcc---eeeEEEEEE
Q psy15738        154 RHTNRHSAGIYLCVANNMVGSSA---AASIALHVL  185 (187)
Q Consensus       154 ~~~~~~d~g~y~C~~~n~~g~~~---s~~~~l~v~  185 (187)
                      .++..+|.|.|.|.+.+..+...   +..+.|.|.
T Consensus        87 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~  121 (214)
T 2zg1_A           87 GDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVT  121 (214)
T ss_dssp             CSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEE
T ss_pred             ccCCHhhCceEEEEEEcCCCceeeecCCceEEEEe
Confidence            99999999999999998763221   245666664

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.81  E-value=2.7e-08  Score=68.40  Aligned_cols=80  Identities=15%  Similarity=0.306  Sum_probs=55.9

Q ss_pred             CceEEEecCCcEEEEeEeccCC-----CCcEEEEeCC--eeC-------------CCCcEEEe----CcEEEEecCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP-----VPNITWTRKN--NNL-------------PGGEYSYS----GNSLTVRHTNRHS  160 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p-----~p~~~W~~~~--~~~-------------~~~~~~~~----~~~l~i~~~~~~d  160 (187)
                      +....+.+|+++.|.|.+.+.|     .+.+.|++..  ..+             ...+....    ...|.|.++..+|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   87 (247)
T 1svz_A            8 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAED   87 (247)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHH
Confidence            4456788999999999999887     6889999853  110             01222211    2379999999999


Q ss_pred             CeEEEEEEecCCCCcceeeEEEEE
Q psy15738        161 AGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       161 ~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      +|.|.|.+.|..+........|.|
T Consensus        88 ~G~Y~C~~~n~~~~~~~~~~~l~V  111 (247)
T 1svz_A           88 LGIYYCFQGSHFPPTFGGGTKLEI  111 (247)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEE
T ss_pred             CEEEEEEEccCCccEECCCEEEEE
Confidence            999999999976542223345554

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=98.81  E-value=2.3e-08  Score=61.94  Aligned_cols=70  Identities=26%  Similarity=0.375  Sum_probs=50.8

Q ss_pred             cCCceEEEecCCcEEEEeEeccC-CCCcEEEEeCCee----C--C-C---CcEEE---------eCcEEEEecCCCCCCe
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGN-PVPNITWTRKNNN----L--P-G---GEYSY---------SGNSLTVRHTNRHSAG  162 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~-p~p~~~W~~~~~~----~--~-~---~~~~~---------~~~~l~i~~~~~~d~g  162 (187)
                      ..+....+.+|+++.|.|.+.+. +.+.+.|++.+..    +  . .   .+...         ....|.|.++..+|+|
T Consensus         8 q~p~~~~v~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG   87 (127)
T 2jju_A            8 QPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAG   87 (127)
T ss_dssp             CCCSEEEEETTSCEEECCEESCCCSCCCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCGGGCE
T ss_pred             eeCCeEEEeCCCCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCHHHCE
Confidence            33445778999999999999776 5678999997621    0  0 0   11110         1357999999999999


Q ss_pred             EEEEEEecCC
Q psy15738        163 IYLCVANNMV  172 (187)
Q Consensus       163 ~y~C~~~n~~  172 (187)
                      .|.|.+.+..
T Consensus        88 ~Y~C~~~~~~   97 (127)
T 2jju_A           88 TYYCVKFRKG   97 (127)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEcCC
Confidence            9999999853

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.81  E-value=3.9e-08  Score=67.52  Aligned_cols=69  Identities=22%  Similarity=0.382  Sum_probs=51.6

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEe----------------CCeeCCC----CcEEEe-----CcEEEEecCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTR----------------KNNNLPG----GEYSYS-----GNSLTVRHTNRH  159 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~----------------~~~~~~~----~~~~~~-----~~~l~i~~~~~~  159 (187)
                      +....+.+|+.+.|.|.+.+.+.+.+.|++                ++.....    .+....     ...|.|.++..+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~   87 (246)
T 4dzb_B            8 PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPE   87 (246)
T ss_dssp             CSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGG
T ss_pred             CcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHH
Confidence            345678899999999999999999999998                2222211    122211     237999999999


Q ss_pred             CCeEEEEEEecCCC
Q psy15738        160 SAGIYLCVANNMVG  173 (187)
Q Consensus       160 d~g~y~C~~~n~~g  173 (187)
                      |+|.|.|.+.|..+
T Consensus        88 D~G~Y~C~~~~~~~  101 (246)
T 4dzb_B           88 DSSFYICSARTSGD  101 (246)
T ss_dssp             GCEEEEEEECCSSG
T ss_pred             HCEEEEEEEecCCC
Confidence            99999999997643

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=98.81  E-value=2.7e-08  Score=60.08  Aligned_cols=67  Identities=24%  Similarity=0.489  Sum_probs=49.4

Q ss_pred             CceEEEecCCcEEEEeEeccC--CCCcEEEEeCC--ee----C-CCCcEEE------eCcEEEEecCCCCCCeEEEEEEe
Q psy15738        105 AGKVEVKKGYSVTLECKADGN--PVPNITWTRKN--NN----L-PGGEYSY------SGNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~--p~p~~~W~~~~--~~----~-~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      +....+.+|+++.|.|.+.+.  +.+.+.|++..  ..    + ...+...      ....|.|.++..+|+|.|.|.+.
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~   86 (111)
T 2ywz_A            7 PRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQAD   86 (111)
T ss_dssp             CSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCSBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCcEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEeeEeCCCEEEEEeCCCCEEEEEECCCChhcCEEEEEEEE
Confidence            445678899999999999876  56789999852  11    1 1123321      12479999999999999999999


Q ss_pred             cC
Q psy15738        170 NM  171 (187)
Q Consensus       170 n~  171 (187)
                      |.
T Consensus        87 ~~   88 (111)
T 2ywz_A           87 YS   88 (111)
T ss_dssp             EC
T ss_pred             cC
Confidence            83

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.81  E-value=2.6e-08  Score=67.25  Aligned_cols=67  Identities=19%  Similarity=0.441  Sum_probs=50.3

Q ss_pred             eEEEecCCcEEEEeEeccCC--CCcEEEEeCC--eeCC------------------CCcEEEe------CcEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNP--VPNITWTRKN--NNLP------------------GGEYSYS------GNSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~--~~~~------------------~~~~~~~------~~~l~i~~~~~  158 (187)
                      ...+.+|+++.|.|.+.+.|  .+.+.|+++.  ..+.                  ..+....      ...|.|.++..
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (219)
T 1c1e_H            9 PELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKN   88 (219)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             CeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCc
Confidence            45678999999999999875  6789999873  2110                  1222211      24799999999


Q ss_pred             CCCeEEEEEEecCCC
Q psy15738        159 HSAGIYLCVANNMVG  173 (187)
Q Consensus       159 ~d~g~y~C~~~n~~g  173 (187)
                      +|+|.|.|.+.|..+
T Consensus        89 ~D~G~Y~C~~~~~~~  103 (219)
T 1c1e_H           89 EDMATYFCARGTTIV  103 (219)
T ss_dssp             GGCEEEEEEEEETTT
T ss_pred             ccCEEEEEEEeccCc
Confidence            999999999999764

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=98.80  E-value=3.9e-08  Score=60.80  Aligned_cols=81  Identities=20%  Similarity=0.313  Sum_probs=54.6

Q ss_pred             CceEEEecCCcEEEEeEeccCC----CCcEEEEeCCe--eCC-------------CCcEEE----eCcEEEEecCCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP----VPNITWTRKNN--NLP-------------GGEYSY----SGNSLTVRHTNRHSA  161 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p----~p~~~W~~~~~--~~~-------------~~~~~~----~~~~l~i~~~~~~d~  161 (187)
                      +....+.+|+++.|.|.+.+.+    .+.+.|++...  ...             ..+...    ....|.|.++..+|+
T Consensus         8 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~sL~I~~v~~~Ds   87 (126)
T 4ffy_L            8 PASLAVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSVETDDA   87 (126)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEEEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCCCEEEEEECCCCHHHC
Confidence            4456789999999999998876    56799998531  110             112211    123699999999999


Q ss_pred             eEEEEEEecCCCCcceeeEEEEEE
Q psy15738        162 GIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       162 g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      |.|.|.+.+.....-.....|.|.
T Consensus        88 G~Y~C~~~~~~~~~fg~gT~L~V~  111 (126)
T 4ffy_L           88 ATYYCQQNNEDPYTFGGGTKLEIK  111 (126)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEEE
T ss_pred             EEEEEEEecCCCcEECCCEEEEEe
Confidence            999999998643322234455553

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.80  E-value=3.2e-08  Score=68.79  Aligned_cols=77  Identities=17%  Similarity=0.209  Sum_probs=55.8

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE------EEeCcEEEEecCCCCCCeEEEEEEecCCC----Ccce
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY------SYSGNSLTVRHTNRHSAGIYLCVANNMVG----SSAA  177 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g----~~~s  177 (187)
                      ..+.+|+.++|.|.+.+ +.+.+.|+|++..+.....      ......|.|.+++.+|+|.|.|.+.|..+    ...+
T Consensus        16 ~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S   94 (257)
T 1b6u_A           16 PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPS   94 (257)
T ss_dssp             SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCC
T ss_pred             CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccC
Confidence            46789999999999974 5678999999865421100      01246799999999999999999986432    2235


Q ss_pred             eeEEEEEE
Q psy15738        178 ASIALHVL  185 (187)
Q Consensus       178 ~~~~l~v~  185 (187)
                      ..+.|.|.
T Consensus        95 ~~~~L~V~  102 (257)
T 1b6u_A           95 DPLDIVIT  102 (257)
T ss_dssp             CCEEEEEE
T ss_pred             CCEEEecc
Confidence            66777764

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.80  E-value=3.2e-08  Score=68.76  Aligned_cols=80  Identities=20%  Similarity=0.331  Sum_probs=57.4

Q ss_pred             CceEEEecCCcEEEEeEec---cCCCCcEEEEeCCeeCCC-------------------CcEEEe------CcEEEEecC
Q psy15738        105 AGKVEVKKGYSVTLECKAD---GNPVPNITWTRKNNNLPG-------------------GEYSYS------GNSLTVRHT  156 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~---g~p~p~~~W~~~~~~~~~-------------------~~~~~~------~~~l~i~~~  156 (187)
                      +....+.+|+.+.|.|.+.   +.|.+.+.|++++.....                   .+....      ...|.|.++
T Consensus        12 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   91 (268)
T 3mj6_A           12 SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDV   91 (268)
T ss_dssp             CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSC
T ss_pred             CCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCC
Confidence            3356788999999999987   667778999996643221                   111111      267999999


Q ss_pred             CCCCCeEEEEEEecCCCCc-ceeeEEEEE
Q psy15738        157 NRHSAGIYLCVANNMVGSS-AAASIALHV  184 (187)
Q Consensus       157 ~~~d~g~y~C~~~n~~g~~-~s~~~~l~v  184 (187)
                      ..+|+|.|.|.+.|..+.. .+..+.|.|
T Consensus        92 ~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V  120 (268)
T 3mj6_A           92 QKADEGIYTCEIRLKNESMVMKKPVELWV  120 (268)
T ss_dssp             CGGGCEEEEEEEEETTCCCEEEEEEEEEE
T ss_pred             CHhHCEEEEEEEEecCCcceEEEEEEEEE
Confidence            9999999999999876554 234555554

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.79  E-value=3.5e-08  Score=68.73  Aligned_cols=81  Identities=16%  Similarity=0.293  Sum_probs=56.5

Q ss_pred             CceEEEecCCcEEEEeEeccCC------CCcEEEEeCC--eeC-------------CCCcEEEe----CcEEEEecCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP------VPNITWTRKN--NNL-------------PGGEYSYS----GNSLTVRHTNRH  159 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p------~p~~~W~~~~--~~~-------------~~~~~~~~----~~~l~i~~~~~~  159 (187)
                      +..+.+.+|+++.|.|.+.+.|      .+.+.|++..  ..+             ...+....    ...|.|.++..+
T Consensus        12 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   91 (264)
T 2gjj_A           12 PSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAE   91 (264)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHH
Confidence            4456788999999999998887      6789999852  211             01232221    247999999999


Q ss_pred             CCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        160 SAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       160 d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      |+|.|.|.+.|..+........|.|.
T Consensus        92 DsG~Y~C~~~~~~~~~~~~~~~L~V~  117 (264)
T 2gjj_A           92 DLAVYYCQQYSNYPWTFGGGTRLEIK  117 (264)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEE
T ss_pred             HCEEEEEEEecCCccEecCCEEEEEE
Confidence            99999999998754322233455553

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.78  E-value=1.9e-08  Score=69.80  Aligned_cols=81  Identities=17%  Similarity=0.292  Sum_probs=50.5

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC------C--C-----------CcEE-----EeCcEEEEecCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL------P--G-----------GEYS-----YSGNSLTVRHTNR  158 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~------~--~-----------~~~~-----~~~~~l~i~~~~~  158 (187)
                      +....+.+|+++.|.|.+.+.|.+.+.|++..  ...      .  .           ....     .....|.|.++..
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   88 (259)
T 3omz_A            9 TKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIE   88 (259)
T ss_dssp             --CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCG
T ss_pred             CceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCc
Confidence            34567899999999999999888899999832  110      0  0           0110     0124699999999


Q ss_pred             CCCeEEEEEEecCCCC--cceeeEEEEEE
Q psy15738        159 HSAGIYLCVANNMVGS--SAAASIALHVL  185 (187)
Q Consensus       159 ~d~g~y~C~~~n~~g~--~~s~~~~l~v~  185 (187)
                      +|+|.|.|.+.|..+.  .......|.|.
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~  117 (259)
T 3omz_A           89 NDSGVYYCATWDQNYYKKLFGSGTSLVVT  117 (259)
T ss_dssp             GGCEEEEEEEECTTSSCEEECCCEEEEEE
T ss_pred             ccCEEEEEEEeeCCccccEECCCCEEEEe
Confidence            9999999999987652  11234455553

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=98.78  E-value=3.6e-08  Score=72.13  Aligned_cols=111  Identities=12%  Similarity=0.139  Sum_probs=68.4

Q ss_pred             cceeEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCC-cEEEEeEeccC-CC--CcEEEE-
Q psy15738         61 YLSYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGY-SVTLECKADGN-PV--PNITWT-  133 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~-~~~l~C~~~g~-p~--p~~~W~-  133 (187)
                      ....|.+++.+|.|.|.|..  ........+.|.|..+|.+...... ......|+ .+.|.|.+.|. |.  +.+.|. 
T Consensus       254 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~pP~V~v~p~~-~~~~~~G~~~vtL~C~a~GfyP~~~~~VtW~~  332 (401)
T 3f8u_B          254 GTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT-LARAAPGEAPPELLCLVSHFYPSGGLEVEWEL  332 (401)
T ss_dssp             EEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEESSS-CCCCCTTCCCCCEEEEEEEEBSSTTCEEEEEE
T ss_pred             EEEEECcCCHhhCceEEEEEEecccceeEEEEEeeccCCeEeeccCc-ceeecCCCccEEEEEEecCCcCCCCcEEEEEe
Confidence            33447788899999999943  3344556788899988887643221 11134576 79999999886 54  689995 


Q ss_pred             eCCe-----eCCC-----CcEE------EeCcEEEEecCCC-CCCeEEEEEEecCC
Q psy15738        134 RKNN-----NLPG-----GEYS------YSGNSLTVRHTNR-HSAGIYLCVANNMV  172 (187)
Q Consensus       134 ~~~~-----~~~~-----~~~~------~~~~~l~i~~~~~-~d~g~y~C~~~n~~  172 (187)
                      +++.     ....     ....      ...+.|.+...+. .+.+.|+|.+.+..
T Consensus       333 rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s  388 (401)
T 3f8u_B          333 RGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS  388 (401)
T ss_dssp             ESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred             cCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence            7652     1111     0011      1123444444332 23469999999976

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=98.77  E-value=6.2e-08  Score=58.45  Aligned_cols=67  Identities=18%  Similarity=0.345  Sum_probs=49.8

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--e---C----------CCCcEEEe----CcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--N---L----------PGGEYSYS----GNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~---~----------~~~~~~~~----~~~l~i~~~~~~d~g~y~  165 (187)
                      +....+.+|+++.|.|.+.+.+.+.+.|++...  .   +          ...+....    ...|.|.++..+|+|.|.
T Consensus        11 p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~   90 (111)
T 1i3g_L           11 HKFMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYF   90 (111)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCEEEEcCCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCCCEEEEEECCCCHHHCEEEE
Confidence            445678899999999999887778899998642  0   1          01222211    236999999999999999


Q ss_pred             EEEecC
Q psy15738        166 CVANNM  171 (187)
Q Consensus       166 C~~~n~  171 (187)
                      |.+.+.
T Consensus        91 C~~~~~   96 (111)
T 1i3g_L           91 CQQYSS   96 (111)
T ss_dssp             EEECSS
T ss_pred             EEEecC
Confidence            999875

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.77  E-value=4.6e-08  Score=65.56  Aligned_cols=77  Identities=19%  Similarity=0.261  Sum_probs=55.2

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeC--CeeC-------------CCCcEEE----eCcEEEEecCCCCCCeEEEEE
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRK--NNNL-------------PGGEYSY----SGNSLTVRHTNRHSAGIYLCV  167 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~--~~~~-------------~~~~~~~----~~~~l~i~~~~~~d~g~y~C~  167 (187)
                      ...+.+|+.+.|.|.+.  |.+.+.|+++  +...             ...++..    ....|.|.++..+|+|.|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG   86 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence            56788999999999998  8889999994  2211             1122221    124699999999999999999


Q ss_pred             EecCCC-CcceeeEEEEEE
Q psy15738        168 ANNMVG-SSAAASIALHVL  185 (187)
Q Consensus       168 ~~n~~g-~~~s~~~~l~v~  185 (187)
                      +.|..+ ......+.|.|.
T Consensus        87 ~~~~~~~~~~~~~~~l~V~  105 (211)
T 3tv3_L           87 SLVGNWDVIFGGGTKLTVL  105 (211)
T ss_dssp             EEETTTEEEECCCEEEEEC
T ss_pred             EecCCCceeECCCceEEEe
Confidence            999877 222345556554

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.77  E-value=3.6e-08  Score=68.34  Aligned_cols=66  Identities=20%  Similarity=0.348  Sum_probs=49.8

Q ss_pred             EEEecCCcEEEEeEeccCC--CCcEEEEeCC--eeC-----------------CCCcEEEe------CcEEEEecCCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNP--VPNITWTRKN--NNL-----------------PGGEYSYS------GNSLTVRHTNRHS  160 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~--~~~-----------------~~~~~~~~------~~~l~i~~~~~~d  160 (187)
                      ..+.+|+.+.|.|.+.|.|  .+.+.|++++  ..+                 ...+....      ...|.|.++..+|
T Consensus        10 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (257)
T 1f3r_B           10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (257)
T ss_dssp             SEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTC
T ss_pred             ccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCccc
Confidence            4678999999999999885  6789999862  111                 01233221      2379999999999


Q ss_pred             CeEEEEEEecCCC
Q psy15738        161 AGIYLCVANNMVG  173 (187)
Q Consensus       161 ~g~y~C~~~n~~g  173 (187)
                      +|.|.|.+.|..|
T Consensus        90 sG~Y~C~a~n~~g  102 (257)
T 1f3r_B           90 TGTYYCTRDLYGG  102 (257)
T ss_dssp             CEEEEEEEESSSS
T ss_pred             CEEEEEEEccccc
Confidence            9999999999864

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.77  E-value=5.7e-08  Score=67.29  Aligned_cols=70  Identities=20%  Similarity=0.346  Sum_probs=52.2

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC--------------CCCcEEE------eCcEEEEecCCCCCC
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL--------------PGGEYSY------SGNSLTVRHTNRHSA  161 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~--------------~~~~~~~------~~~~l~i~~~~~~d~  161 (187)
                      .+....+.+|+++.|.|.+.+.|.+.+.|++...  ..              ...++..      ....|.|.++..+|+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Ds   88 (256)
T 3tf7_C            9 PDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDS   88 (256)
T ss_dssp             SCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGC
T ss_pred             cCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccC
Confidence            3445678899999999999999999999998431  10              0111111      123699999999999


Q ss_pred             eEEEEEEecCCC
Q psy15738        162 GIYLCVANNMVG  173 (187)
Q Consensus       162 g~y~C~~~n~~g  173 (187)
                      |.|.|.+.|..+
T Consensus        89 G~Y~C~~~~~~~  100 (256)
T 3tf7_C           89 AVYFCAVSAKGT  100 (256)
T ss_dssp             SEEEEEEECTTC
T ss_pred             EEEEEEEecCCC
Confidence            999999999765

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.77  E-value=3.4e-08  Score=68.88  Aligned_cols=66  Identities=18%  Similarity=0.390  Sum_probs=47.4

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC------CC------C-----cEEE-----eCcEEEEecCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL------PG------G-----EYSY-----SGNSLTVRHTNRHS  160 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~------~~------~-----~~~~-----~~~~l~i~~~~~~d  160 (187)
                      +....+.+|+++.|.|.+.+ +.+.+.|++...  ..      ..      .     +...     ....|.|.++..+|
T Consensus        34 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D  112 (270)
T 3qib_D           34 PRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGD  112 (270)
T ss_dssp             CSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGG
T ss_pred             CCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhH
Confidence            34467889999999999865 678999998321  00      00      0     1111     13479999999999


Q ss_pred             CeEEEEEEecC
Q psy15738        161 AGIYLCVANNM  171 (187)
Q Consensus       161 ~g~y~C~~~n~  171 (187)
                      +|.|.|.+.+.
T Consensus       113 ~G~Y~C~~~~~  123 (270)
T 3qib_D          113 SALYLCASSLN  123 (270)
T ss_dssp             CEEEEEEEESC
T ss_pred             CeEEEEEEecC
Confidence            99999999974

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=98.76  E-value=4.4e-08  Score=58.91  Aligned_cols=67  Identities=21%  Similarity=0.387  Sum_probs=48.6

Q ss_pred             CceEEEecCCcEEEEeE-eccCC-CCcEEEEeCCeeC-------------CCCcEEEe------CcEEEEecCCCCCCeE
Q psy15738        105 AGKVEVKKGYSVTLECK-ADGNP-VPNITWTRKNNNL-------------PGGEYSYS------GNSLTVRHTNRHSAGI  163 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~-~~g~p-~p~~~W~~~~~~~-------------~~~~~~~~------~~~l~i~~~~~~d~g~  163 (187)
                      +....+.+|+++.|.|. ..+.+ .+.+.|++.....             ...+....      ...|.|.++..+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~   86 (109)
T 1pew_A            7 PHSVSESPGKTVTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEAD   86 (109)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCEEEcCCCCEEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhhCEE
Confidence            44567889999999999 77665 4789999876211             01222221      2379999999999999


Q ss_pred             EEEEEecC
Q psy15738        164 YLCVANNM  171 (187)
Q Consensus       164 y~C~~~n~  171 (187)
                      |.|.+.+.
T Consensus        87 Y~C~~~~~   94 (109)
T 1pew_A           87 YYCQSYDA   94 (109)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEeC
Confidence            99999874

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.76  E-value=7.3e-09  Score=69.47  Aligned_cols=55  Identities=22%  Similarity=0.403  Sum_probs=45.1

Q ss_pred             ecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEec
Q psy15738        111 KKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      .+|+.+.|.|.+   |.+.+.|+++|..+...  ....+.|.|.++..+|+|.|.|.+.+
T Consensus        16 ~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~--~~~~~~L~i~~v~~~DsG~Y~C~~~~   70 (204)
T 1sy6_A           16 QEDGSVLLTCDA---EAKNITWFKDGKMIGFL--TEDKKKWNLGSNAKDPRGMYQCKGSQ   70 (204)
T ss_dssp             CSSSEEEEEECS---CSSEEEEEETTEEEEEE--ESSCCCEEEEEGGGCCEEEEEEESSS
T ss_pred             cCCCeEEEEEcC---CCCEEEEEECCEECCCC--CCCCCeEEeCCCCcCCCEEEEEEecC
Confidence            579999999998   78899999999876421  11346799999999999999999755

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.75  E-value=6.1e-09  Score=70.98  Aligned_cols=70  Identities=13%  Similarity=0.290  Sum_probs=40.2

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC----------C---CCcEE----EeCcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL----------P---GGEYS----YSGNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~----------~---~~~~~----~~~~~l~i~~~~~~d~g~y~  165 (187)
                      +....+.+|+++.|.|.+.+.|.+.+.|++++.  ..          .   ..+..    .....|.|.++..+|+|.|.
T Consensus        30 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~  109 (233)
T 3bqu_C           30 PASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYY  109 (233)
T ss_dssp             CSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEE
T ss_pred             CCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEE
Confidence            334567899999999999998888899998542  11          0   11111    11237999999999999999


Q ss_pred             EEEecCCCC
Q psy15738        166 CVANNMVGS  174 (187)
Q Consensus       166 C~~~n~~g~  174 (187)
                      |.+.|..+.
T Consensus       110 C~~~~~~~~  118 (233)
T 3bqu_C          110 CLQSDNLPY  118 (233)
T ss_dssp             EEECSSSSC
T ss_pred             EEEecCCce
Confidence            999987653

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=98.75  E-value=3.8e-08  Score=68.73  Aligned_cols=122  Identities=12%  Similarity=0.153  Sum_probs=72.4

Q ss_pred             ccEEEeeccc-cccceeEEEEEecccceeEEeec---------c------------c------eeeEEEEEEEE----cC
Q psy15738         49 CSYIILATSL-LHYLSYILAMEKEEEERKKKKKR---------K------------K------RKKKKKKKEKR----IP   96 (187)
Q Consensus        49 ~~~~~~~~~~-~~~~~~~~~v~~~d~g~y~c~~~---------~------------~------~~~~~~~l~v~----~~   96 (187)
                      .|+.+..... ......|.+++.+|+|.|.|...         .            .      .......|.|.    .+
T Consensus        89 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~  168 (267)
T 3u1s_H           89 GRVTITRDSGASTVYMELRGLTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKG  168 (267)
T ss_dssp             TTEEEEECGGGCCEEEEECSCCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBC
T ss_pred             CcEEEEEcCCCCEEEEEECCCChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCC
Confidence            4555544332 23345588899999999999553         0            0      11223456664    23


Q ss_pred             CeeEEecCCceEEEecCCcEEEEeEeccC-C-CCcEEEEeCCeeCCCCc-----------EEEeCcEEEEecCCCCCCeE
Q psy15738         97 PRIIYVSGAGKVEVKKGYSVTLECKADGN-P-VPNITWTRKNNNLPGGE-----------YSYSGNSLTVRHTNRHSAGI  163 (187)
Q Consensus        97 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~p~~~W~~~~~~~~~~~-----------~~~~~~~l~i~~~~~~d~g~  163 (187)
                      |.+.......  ....|+.+.|.|.+.+. | ++.+.|  ++..+....           .....+.|.+......| +.
T Consensus       169 P~v~~~~~~~--~~~~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~  243 (267)
T 3u1s_H          169 PSVFPLAPSS--KSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QT  243 (267)
T ss_dssp             CEEEEECCCG--GGEETTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CC
T ss_pred             CEEEEecCCc--ccCCCCcEEEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CE
Confidence            3332112211  12468999999999874 4 357889  554432211           11122468888888778 99


Q ss_pred             EEEEEecCCCCc
Q psy15738        164 YLCVANNMVGSS  175 (187)
Q Consensus       164 y~C~~~n~~g~~  175 (187)
                      |+|.+.+..+..
T Consensus       244 ytC~v~h~~~~~  255 (267)
T 3u1s_H          244 YICNVNHKPSNT  255 (267)
T ss_dssp             CEEEEEEGGGTE
T ss_pred             EEEEEEECCCCc
Confidence            999999976544

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.74  E-value=7.5e-09  Score=69.48  Aligned_cols=66  Identities=11%  Similarity=0.164  Sum_probs=51.0

Q ss_pred             EecCCcEEEEeEeccCC---C-CcEEEEeCCeeCCCCc----------EEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        110 VKKGYSVTLECKADGNP---V-PNITWTRKNNNLPGGE----------YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~p---~-p~~~W~~~~~~~~~~~----------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +..|+++.|.|.+.|.|   . +.+.|++++..+....          .......|.|.++..+|.|.|.|.+.|..+..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            67899999999998884   2 3899999997654221          11123468999999999999999999988754

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.73  E-value=2.6e-08  Score=68.49  Aligned_cols=64  Identities=23%  Similarity=0.449  Sum_probs=48.6

Q ss_pred             EEEecCCcEEEEeEeccCC--CCcEEEEeCCe--eC------------------CCCcEEEe------CcEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNP--VPNITWTRKNN--NL------------------PGGEYSYS------GNSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~~--~~------------------~~~~~~~~------~~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|.|  .+.+.|+++..  ..                  ...+....      ...|.|.++..+
T Consensus        12 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   91 (247)
T 2ghw_B           12 GVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAE   91 (247)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCHH
Confidence            5788999999999999887  57899998431  00                  11232221      136999999999


Q ss_pred             CCeEEEEEEecC
Q psy15738        160 SAGIYLCVANNM  171 (187)
Q Consensus       160 d~g~y~C~~~n~  171 (187)
                      |+|.|.|.+.|.
T Consensus        92 D~G~Y~C~~~n~  103 (247)
T 2ghw_B           92 DTAVYYCARDRS  103 (247)
T ss_dssp             GCEEEEEEEEET
T ss_pred             HCEEEEEeeecc
Confidence            999999999997

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.73  E-value=6.5e-08  Score=65.09  Aligned_cols=69  Identities=17%  Similarity=0.242  Sum_probs=49.8

Q ss_pred             CceEEEecCCcEEEEeEec-cCC-CCcEEEEeCCe--eC-------------CCCcEEEe----CcEEEEecCCCCCCeE
Q psy15738        105 AGKVEVKKGYSVTLECKAD-GNP-VPNITWTRKNN--NL-------------PGGEYSYS----GNSLTVRHTNRHSAGI  163 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~-g~p-~p~~~W~~~~~--~~-------------~~~~~~~~----~~~l~i~~~~~~d~g~  163 (187)
                      +....+.+|+.+.|.|.+. +.+ .+.+.|++++.  ..             ...++...    ...|.|.++..+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            4456788999999999954 443 57899998542  11             01222211    2379999999999999


Q ss_pred             EEEEEecCCC
Q psy15738        164 YLCVANNMVG  173 (187)
Q Consensus       164 y~C~~~n~~g  173 (187)
                      |.|.+.|..+
T Consensus        87 Y~C~~~~~~~   96 (216)
T 2xzc_L           87 YYCGTWDSSL   96 (216)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEEeCCC
Confidence            9999999876

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=98.72  E-value=4.9e-08  Score=58.87  Aligned_cols=67  Identities=19%  Similarity=0.364  Sum_probs=48.8

Q ss_pred             CceEEEecCCcEEEEeEeccCC----CCcEEEEeCC--e-e--C----------CCCcEEEe----CcEEEEecCCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP----VPNITWTRKN--N-N--L----------PGGEYSYS----GNSLTVRHTNRHSA  161 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p----~p~~~W~~~~--~-~--~----------~~~~~~~~----~~~l~i~~~~~~d~  161 (187)
                      +....+.+|+++.|.|.+.+.+    .+.+.|++..  . +  +          ...+....    ...|.|.++..+|+
T Consensus         8 p~~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds   87 (111)
T 1j05_L            8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV   87 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCEEEEeCCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccCCEEEEEECCCCcccC
Confidence            3446778999999999998876    4679999853  1 1  0          01222211    13799999999999


Q ss_pred             eEEEEEEecC
Q psy15738        162 GIYLCVANNM  171 (187)
Q Consensus       162 g~y~C~~~n~  171 (187)
                      |.|.|.+.+.
T Consensus        88 G~Y~C~~~~~   97 (111)
T 1j05_L           88 ATYYCQQTNE   97 (111)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEEEEecC
Confidence            9999999875

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=98.72  E-value=1.8e-08  Score=62.07  Aligned_cols=34  Identities=3%  Similarity=-0.223  Sum_probs=24.5

Q ss_pred             EEEEEecccceeEEee--ccceeeEEEEEEEEcCCe
Q psy15738         65 ILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPR   98 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~   98 (187)
                      |..+...|+|.|+|.+  ..+....++.|.|...|.
T Consensus        67 i~~~~~~D~G~YtC~A~N~~G~~~~t~~l~v~~~P~  102 (126)
T 1he7_A           67 LNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPF  102 (126)
T ss_dssp             EESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCTT
T ss_pred             ECcCCCCCCEEEEEEEEECCCeEEEEEEEEEEcCCC
Confidence            7788889999999944  455556666676665553

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.72  E-value=6.4e-08  Score=66.91  Aligned_cols=68  Identities=18%  Similarity=0.280  Sum_probs=50.4

Q ss_pred             ceEEEecCCcEEEEeEeccC--CCCcEEEEeCCe--eC-------------CCCcEEEe----CcEEEEecCCCCCCeEE
Q psy15738        106 GKVEVKKGYSVTLECKADGN--PVPNITWTRKNN--NL-------------PGGEYSYS----GNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~--p~p~~~W~~~~~--~~-------------~~~~~~~~----~~~l~i~~~~~~d~g~y  164 (187)
                      ....+.+|+++.|.|.+.+.  |.+.+.|++...  ..             ...++...    ...|.|.++..+|+|.|
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y   89 (256)
T 3ux9_B           10 PSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADY   89 (256)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEE
Confidence            34678899999999999887  778999998531  10             01122211    13699999999999999


Q ss_pred             EEEEecCCC
Q psy15738        165 LCVANNMVG  173 (187)
Q Consensus       165 ~C~~~n~~g  173 (187)
                      .|.+.|..+
T Consensus        90 ~C~~~~~~~   98 (256)
T 3ux9_B           90 YCQVRDNNE   98 (256)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEEECCC
Confidence            999998654

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.71  E-value=2.6e-08  Score=66.82  Aligned_cols=67  Identities=21%  Similarity=0.390  Sum_probs=50.6

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeCC-------------CCcEEEe----CcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNLP-------------GGEYSYS----GNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~~-------------~~~~~~~----~~~l~i~~~~~~d~g~y~  165 (187)
                      +....+.+|+.+.|.|.+.+.|.+.+.|+++.  ..+.             ..+....    ...|.|.++..+|+|.|.
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            44567889999999999988888899999853  2110             1222211    237999999999999999


Q ss_pred             EEEecC
Q psy15738        166 CVANNM  171 (187)
Q Consensus       166 C~~~n~  171 (187)
                      |.+.|.
T Consensus        86 C~~~n~   91 (212)
T 1nfd_E           86 CLSSYG   91 (212)
T ss_dssp             EEEEET
T ss_pred             EEEEcc
Confidence            999973

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=98.71  E-value=5.4e-08  Score=58.43  Aligned_cols=66  Identities=27%  Similarity=0.516  Sum_probs=48.6

Q ss_pred             CceEEEecCCcEEEEeEeccCC--CCcEEEEeCC--ee----C-CCCcEEE------eCcEEEEecCCCCCCeEEEEEEe
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP--VPNITWTRKN--NN----L-PGGEYSY------SGNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~--~~----~-~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      +....+.+|+++.|.|.+.+.+  .+.+.|++..  ..    + ...+...      ....|.|.++..+|+|.|.|.+.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~   86 (108)
T 2coq_A            7 PRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKAY   86 (108)
T ss_dssp             CSEEEECTTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CceEEEcCCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEEEEeCCceEEEEcCCCCEEEEEECCCCcccCEEEEEEEE
Confidence            4456788999999999997763  5679999863  21    1 1123321      12479999999999999999999


Q ss_pred             c
Q psy15738        170 N  170 (187)
Q Consensus       170 n  170 (187)
                      +
T Consensus        87 ~   87 (108)
T 2coq_A           87 R   87 (108)
T ss_dssp             E
T ss_pred             e
Confidence            8

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.71  E-value=8.9e-08  Score=65.14  Aligned_cols=68  Identities=24%  Similarity=0.388  Sum_probs=50.4

Q ss_pred             CceEEEecCCcEEEEeEeccCC--CCcEEEEeCC--eeC------C------------CCcEEEe------CcEEEEecC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP--VPNITWTRKN--NNL------P------------GGEYSYS------GNSLTVRHT  156 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~--~~~------~------------~~~~~~~------~~~l~i~~~  156 (187)
                      +....+.+|+++.|.|.+.+.+  .+.+.|+++.  ...      .            .++....      ...|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (227)
T 1mju_H            7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (227)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence            3446788999999999998876  6789999864  110      0            1222221      247999999


Q ss_pred             CCCCCeEEEEEEecCC
Q psy15738        157 NRHSAGIYLCVANNMV  172 (187)
Q Consensus       157 ~~~d~g~y~C~~~n~~  172 (187)
                      ..+|+|.|.|.+.|..
T Consensus        87 ~~~D~G~Y~C~~~~~~  102 (227)
T 1mju_H           87 TSDDSAVYYCANKLGW  102 (227)
T ss_dssp             CGGGCEEEEEEEEETT
T ss_pred             CcccCEEEEEEECCCC
Confidence            9999999999999863

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=98.71  E-value=4.9e-08  Score=59.68  Aligned_cols=68  Identities=25%  Similarity=0.347  Sum_probs=49.2

Q ss_pred             CceEEEecCCcEEEEeEeccC-CCCcEEEEeCCeeCC------C----CcE--EE-------eCcEEEEecCCCCCCeEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGN-PVPNITWTRKNNNLP------G----GEY--SY-------SGNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~-p~p~~~W~~~~~~~~------~----~~~--~~-------~~~~l~i~~~~~~d~g~y  164 (187)
                      +....+.+|+++.|.|.+.+. |.+.+.|++++....      .    .+.  ..       ....|.|.++..+|+|.|
T Consensus        14 p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y   93 (120)
T 2yz1_A           14 EKSVSVAAGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTPEDAGTY   93 (120)
T ss_dssp             SSEEEECTTCCEEECCEESCCCSCCCEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCGGGCEEE
T ss_pred             CceEEEeCCCCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCHHHCEEE
Confidence            445678899999999999775 567899999752100      0    000  00       014699999999999999


Q ss_pred             EEEEecCC
Q psy15738        165 LCVANNMV  172 (187)
Q Consensus       165 ~C~~~n~~  172 (187)
                      .|.+.+..
T Consensus        94 ~C~~~~~~  101 (120)
T 2yz1_A           94 YCVKFQKG  101 (120)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEcCC
Confidence            99999754

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.71  E-value=8.8e-08  Score=66.40  Aligned_cols=67  Identities=22%  Similarity=0.419  Sum_probs=50.5

Q ss_pred             eEEEecCCcEEEEeEeccCC--CCcEEEEeCC--eeC------------------CCCcEEEe------CcEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNP--VPNITWTRKN--NNL------------------PGGEYSYS------GNSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~--~~~------------------~~~~~~~~------~~~l~i~~~~~  158 (187)
                      ...+.+|+++.|.|.+.+.|  .+.+.|++++  ..+                  ...+....      ...|.|.++..
T Consensus         9 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (256)
T 1nqb_A            9 AELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTS   88 (256)
T ss_dssp             CEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCCh
Confidence            45788999999999998875  5789999842  111                  01222221      24799999999


Q ss_pred             CCCeEEEEEEecCCC
Q psy15738        159 HSAGIYLCVANNMVG  173 (187)
Q Consensus       159 ~d~g~y~C~~~n~~g  173 (187)
                      +|+|.|.|.+.|..|
T Consensus        89 ~DsG~Y~C~~~n~~g  103 (256)
T 1nqb_A           89 EDSAVYYCARYDYYG  103 (256)
T ss_dssp             GGCEEEEEEECCTTS
T ss_pred             hhCEEEEEEEeeccC
Confidence            999999999999866

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.71  E-value=1.9e-08  Score=73.26  Aligned_cols=55  Identities=13%  Similarity=0.007  Sum_probs=24.8

Q ss_pred             eEEEEEecccceeEEeec--cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEE
Q psy15738         64 YILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNIT  131 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~  131 (187)
                      .|..|+.+|+|.|+|.+.  .+..+..+.|.|...+             ..|..+.+.|.+.|.|.|.+.
T Consensus       304 ~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~~-------------~~g~~~~l~C~~~g~P~P~i~  360 (361)
T 2xot_A          304 FFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFT-------------LHGHHDTLNAAADPWSHPQFE  360 (361)
T ss_dssp             EESSCCTTSCEEEEEEEECSSCEEEEEEEEEEESSC-------------CC-------------------
T ss_pred             EEeecCcccCEEEEEEEecCCCccEEEEEEEEEeee-------------ccCCceEEEEEeCCCCCCccc
Confidence            378899999999999554  4555566677774322             567789999999999998763

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.70  E-value=2.2e-08  Score=61.07  Aligned_cols=37  Identities=8%  Similarity=-0.189  Sum_probs=27.9

Q ss_pred             eEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeE
Q psy15738         64 YILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRII  100 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~  100 (187)
                      .|..+..+|.|.|+|.+  ..+.....+.|.|..++...
T Consensus        65 ~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~p~  103 (118)
T 2eo9_A           65 QIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPV  103 (118)
T ss_dssp             EEESCCGGGCCCEEEEEECSSCEEEEECCEEEECCSCCC
T ss_pred             EEccCCcCCCEEEEEEEEcCCCcEEEEEEEEEEeCCCCc
Confidence            38899999999999944  44556677888888776543

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=98.70  E-value=1.1e-07  Score=57.62  Aligned_cols=67  Identities=24%  Similarity=0.422  Sum_probs=49.2

Q ss_pred             CceEEEecCCcEEEEeEeccCC--CCcEEEEeCC--eeC-----CCCcEEEe------CcEEEEecCCCCCCeEEEEEEe
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP--VPNITWTRKN--NNL-----PGGEYSYS------GNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~--~~~-----~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      +....+.+|+++.|.|.+.+.+  .+.+.|++..  ...     ...+....      ...|.|.++..+|+|.|.|.+.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~   86 (113)
T 1sq2_N            7 PRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLG   86 (113)
T ss_dssp             CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             CccEEEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceEeEEeCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEE
Confidence            4456788999999999998765  5689999863  211     11233211      2479999999999999999999


Q ss_pred             cC
Q psy15738        170 NM  171 (187)
Q Consensus       170 n~  171 (187)
                      +.
T Consensus        87 ~~   88 (113)
T 1sq2_N           87 VA   88 (113)
T ss_dssp             BT
T ss_pred             eC
Confidence            83

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=98.69  E-value=1.2e-07  Score=57.46  Aligned_cols=67  Identities=19%  Similarity=0.381  Sum_probs=48.8

Q ss_pred             CceEEEecCCcEEEEeEeccCCC------CcEEEEeCCe--e---C----------CCCcEEEe----CcEEEEecCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPV------PNITWTRKNN--N---L----------PGGEYSYS----GNSLTVRHTNRH  159 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~------p~~~W~~~~~--~---~----------~~~~~~~~----~~~l~i~~~~~~  159 (187)
                      +....+.+|+++.|.|.+.+.+.      +.+.|++...  .   +          ...+....    ...|.|.++..+
T Consensus         8 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   87 (114)
T 1eeq_A            8 PDSLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAE   87 (114)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCeEEEcCCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecCCEEEEEECCCCcc
Confidence            44567889999999999987763      6799998541  1   0          01222211    236999999999


Q ss_pred             CCeEEEEEEecC
Q psy15738        160 SAGIYLCVANNM  171 (187)
Q Consensus       160 d~g~y~C~~~n~  171 (187)
                      |+|.|.|.+.+.
T Consensus        88 DsG~Y~C~~~~~   99 (114)
T 1eeq_A           88 DVAVYYCQQYYS   99 (114)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cCEEEEEEEeeC
Confidence            999999999975

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.69  E-value=8.8e-08  Score=62.91  Aligned_cols=77  Identities=17%  Similarity=0.270  Sum_probs=55.8

Q ss_pred             eEEEecCCcEEEEeEecc-CCCCcEEEEeC-CeeC-------------CC--CcEEE--eCcEEEEecCCCCCCeEEEEE
Q psy15738        107 KVEVKKGYSVTLECKADG-NPVPNITWTRK-NNNL-------------PG--GEYSY--SGNSLTVRHTNRHSAGIYLCV  167 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g-~p~p~~~W~~~-~~~~-------------~~--~~~~~--~~~~l~i~~~~~~d~g~y~C~  167 (187)
                      ...+.+|+++.|.|.+.+ .+.+.+.|++. +..+             ..  ++...  .++.|.|.+++..|+|.|.|.
T Consensus         8 ~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C~   87 (180)
T 2dru_A            8 NVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMR   87 (180)
T ss_dssp             EEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEEE
T ss_pred             eEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEEE
Confidence            467889999999999854 34678999994 2211             11  23332  356799999999999999999


Q ss_pred             EecCCCCcceeeEEEEEE
Q psy15738        168 ANNMVGSSAAASIALHVL  185 (187)
Q Consensus       168 ~~n~~g~~~s~~~~l~v~  185 (187)
                      +.+.. .. ...+.|.|.
T Consensus        88 v~~~~-~~-~~~~~L~V~  103 (180)
T 2dru_A           88 MLHET-ED-QWKITMEVY  103 (180)
T ss_dssp             EESSS-EE-EEEEEEEEE
T ss_pred             EEcCC-eE-EEEEEEEEE
Confidence            98765 33 567777775

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.69  E-value=9.8e-08  Score=67.08  Aligned_cols=68  Identities=25%  Similarity=0.481  Sum_probs=51.1

Q ss_pred             ceEEEecCCcEEEEeEeccCC--CCcEEEEeCCe--eC------------------CCCcEEEe------CcEEEEecCC
Q psy15738        106 GKVEVKKGYSVTLECKADGNP--VPNITWTRKNN--NL------------------PGGEYSYS------GNSLTVRHTN  157 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~~--~~------------------~~~~~~~~------~~~l~i~~~~  157 (187)
                      ....+.+|+++.|.|.+.+.|  .+.+.|++++.  ..                  ...+....      ...|.|.++.
T Consensus        34 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  113 (282)
T 1qok_A           34 GAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLT  113 (282)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCC
Confidence            346788999999999998875  57899998641  10                  01222211      1479999999


Q ss_pred             CCCCeEEEEEEecCCC
Q psy15738        158 RHSAGIYLCVANNMVG  173 (187)
Q Consensus       158 ~~d~g~y~C~~~n~~g  173 (187)
                      .+|+|.|.|.+.|..|
T Consensus       114 ~~DsG~Y~C~~~n~~g  129 (282)
T 1qok_A          114 SEDTAVYYCNEGTPTG  129 (282)
T ss_dssp             GGGCEEEEEEEECSSS
T ss_pred             hhhCEEEEEEeccCCC
Confidence            9999999999999876

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.68  E-value=1.4e-07  Score=64.33  Aligned_cols=121  Identities=10%  Similarity=-0.003  Sum_probs=67.0

Q ss_pred             ccEEEeec-cccccceeEEEEEecccceeEEeeccc----------eeeEEEEEEEEcCCeeEEecCCceEEEecCCcEE
Q psy15738         49 CSYIILAT-SLLHYLSYILAMEKEEEERKKKKKRKK----------RKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVT  117 (187)
Q Consensus        49 ~~~~~~~~-~~~~~~~~~~~v~~~d~g~y~c~~~~~----------~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~  117 (187)
                      .++.+... ......+.|..++.+|.|.|.|.....          .-.....|.|......  ...+ ...+.. ....
T Consensus        62 ~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~--~~~P-~v~~~~-~~~~  137 (229)
T 1hxm_A           62 DNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQP--HTKP-SVFVMK-NGTN  137 (229)
T ss_dssp             TTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCC--CBCC-EEEEEE-ETTE
T ss_pred             CeEEEEEcCCCCEEEEEECcCCHhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCC--CcCC-cEEEcC-CCCe
Confidence            45555432 222234557889999999999944322          1123457777642111  0011 111111 2248


Q ss_pred             EEeEeccC-CCC-cEEEEeCCeeCCCCcE--E-EeCcEEEEecCCC-CCCeEEEEEEecCCCC
Q psy15738        118 LECKADGN-PVP-NITWTRKNNNLPGGEY--S-YSGNSLTVRHTNR-HSAGIYLCVANNMVGS  174 (187)
Q Consensus       118 l~C~~~g~-p~p-~~~W~~~~~~~~~~~~--~-~~~~~l~i~~~~~-~d~g~y~C~~~n~~g~  174 (187)
                      |.|.+.|. |.+ .+.|+++ ..+.....  . ...+.+.+..... .+.|.|.|.+.+..+.
T Consensus       138 L~C~~~g~~P~~i~v~W~~~-~~~~~~~~~~~~~~dg~y~~~~~~~~~~~~~ytC~V~h~~~~  199 (229)
T 1hxm_A          138 VACLVKEFYPKDIRINLVSS-KKITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDNKT  199 (229)
T ss_dssp             EEEEEESCBSSCCEEEEECS-SEEEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEETTEE
T ss_pred             EEEEEEEEeCCCEEEEEecC-CEEecCccceEECCCCcEEEEECcccCCCCcEEEEEEeCCCC
Confidence            99999886 443 7999999 65432211  1 1223444433333 5789999999997644

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A

Probab=98.68  E-value=1.2e-07  Score=56.80  Aligned_cols=87  Identities=20%  Similarity=0.224  Sum_probs=60.1

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCC---CCcEE----EeCcEEEEecCCCCCCeEEEEEE
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLP---GGEYS----YSGNSLTVRHTNRHSAGIYLCVA  168 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~---~~~~~----~~~~~l~i~~~~~~d~g~y~C~~  168 (187)
                      +|.+.....   ..+..|+.++|.|..... ...+.|+++|....   .....    .....+.|..++..|+|.|.|..
T Consensus         9 kPsL~a~P~---~vv~~G~~VtL~C~~~~~-~~~f~l~k~g~~~~~~~~~~~~~~~~~~~~~f~i~~vt~~~aG~Y~C~~   84 (106)
T 3kgr_A            9 RPSISAEPG---TVIPLGSHVTFVCRGPVG-VQTFRLERESRSTYNDTEDVSQASPSESEARFRIDSVSEGNAGPYRCIY   84 (106)
T ss_dssp             CCEEEEESC---SEEETTCCEEEEEEECTT-CCEEEEEEGGGTEEEEECCCEEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEEeCC---CccCCCCeEEEEEEccCC-CcEEEEEECCCccccccccccccCCCCcceEEEecCCCcCCCceEEEEe
Confidence            455543332   267899999999997643 35799999986441   11111    12357899999999999999999


Q ss_pred             ecCC-CCcceeeEEEEEEe
Q psy15738        169 NNMV-GSSAAASIALHVLC  186 (187)
Q Consensus       169 ~n~~-g~~~s~~~~l~v~~  186 (187)
                      .+.. .+..|..+.|.|..
T Consensus        85 ~~~~~~S~~Sdpl~L~Vtg  103 (106)
T 3kgr_A           85 YKPPKWSEQSDYLELLVKE  103 (106)
T ss_dssp             EETTEECCCCCCEEEEEEC
T ss_pred             eCCCcccCCCCCEEEEEeC
Confidence            8864 33447788888753

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=98.67  E-value=2.2e-07  Score=58.90  Aligned_cols=67  Identities=21%  Similarity=0.376  Sum_probs=49.6

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe-----eC----------CCCcEEEe----CcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN-----NL----------PGGEYSYS----GNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~-----~~----------~~~~~~~~----~~~l~i~~~~~~d~g~y~  165 (187)
                      +..+.+.+|++++|.|.+.+.+.+.+.|++...     .+          ...+....    ...|.|.++..+|+|.|.
T Consensus        23 p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~v~~~DsG~Y~  102 (146)
T 2yc1_B           23 PATLSVSPGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSGTDFTLTISSLEPEDFAIYY  102 (146)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCEEEEecCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCCCEEEEEECCCCHHHCEEEE
Confidence            345678899999999999887777899998541     11          01222211    236999999999999999


Q ss_pred             EEEecC
Q psy15738        166 CVANNM  171 (187)
Q Consensus       166 C~~~n~  171 (187)
                      |.+.+.
T Consensus       103 C~~~~~  108 (146)
T 2yc1_B          103 CQQYRY  108 (146)
T ss_dssp             EEECSS
T ss_pred             EEEecC
Confidence            999875

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=98.67  E-value=2.4e-07  Score=56.03  Aligned_cols=67  Identities=16%  Similarity=0.380  Sum_probs=48.5

Q ss_pred             CceEEEecCCcEEEEeEeccCC-----CCcEEEEeCCe--e---C----------CCCcEEE--e--CcEEEEecCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP-----VPNITWTRKNN--N---L----------PGGEYSY--S--GNSLTVRHTNRHS  160 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p-----~p~~~W~~~~~--~---~----------~~~~~~~--~--~~~l~i~~~~~~d  160 (187)
                      +....+.+|+++.|.|.+.+.+     .+.+.|++...  .   +          ...+...  .  ...|.|.++..+|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~D   87 (113)
T 1dlf_L            8 PLSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAED   87 (113)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             CCEEEEcCCCCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEccCCEEEEEECCCChHH
Confidence            4456788999999999998765     36799998531  1   0          0122221  1  1369999999999


Q ss_pred             CeEEEEEEecC
Q psy15738        161 AGIYLCVANNM  171 (187)
Q Consensus       161 ~g~y~C~~~n~  171 (187)
                      +|.|.|.+.+.
T Consensus        88 sG~Y~C~~~~~   98 (113)
T 1dlf_L           88 LGVYFCSQSTH   98 (113)
T ss_dssp             CEEEEEEECSS
T ss_pred             CEEEEEEEecC
Confidence            99999999875

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.67  E-value=1.9e-07  Score=56.77  Aligned_cols=72  Identities=8%  Similarity=0.107  Sum_probs=42.8

Q ss_pred             eEEccCCCCeeEEEeC-eEee--eccEEEeeccccccceeEEEEEecccceeEEe--eccceeeEEEEEEEEcCCee
Q psy15738         28 IMFADSRPESTFWIFG-KLIT--SCSYIILATSLLHYLSYILAMEKEEEERKKKK--KRKKRKKKKKKKEKRIPPRI   99 (187)
Q Consensus        28 ~~~~~~~~~~~~w~~~-~~~~--~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~--~~~~~~~~~~~l~v~~~p~~   99 (187)
                      |.+.+.+.....|+++ ..+.  ..++.+...+.......|..+..+|.|.|+|.  +..+..+..+.|.|..+|..
T Consensus        37 C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~  113 (116)
T 2kkq_A           37 CQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQ  113 (116)
T ss_dssp             EEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEECCSCC
T ss_pred             EEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEeCCCCC
Confidence            4444444445555533 3332  23444443332222455889999999999994  44566677888888877654

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=98.67  E-value=6.6e-08  Score=57.52  Aligned_cols=35  Identities=6%  Similarity=-0.144  Sum_probs=25.8

Q ss_pred             eEEEEEecccceeEEe--eccceeeEEEEEEEEcCCe
Q psy15738         64 YILAMEKEEEERKKKK--KRKKRKKKKKKKEKRIPPR   98 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~--~~~~~~~~~~~l~v~~~p~   98 (187)
                      .|..+..+|.|.|+|.  +..+..+.++.|.|..+|.
T Consensus        65 ~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~~~P~  101 (103)
T 1wwb_X           65 QLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG  101 (103)
T ss_dssp             EEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCCCC
T ss_pred             EECCCCcccCEEEEEEEEeCCCcEeEEEEEEECCCCC
Confidence            3778889999999994  4456666777777766553

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.66  E-value=1.5e-07  Score=63.81  Aligned_cols=66  Identities=23%  Similarity=0.365  Sum_probs=50.1

Q ss_pred             EEEecCCcEEEEeEeccCC--CCcEEEEeCC--eeC------------------CCCcEEEe------CcEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNP--VPNITWTRKN--NNL------------------PGGEYSYS------GNSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~--~~~------------------~~~~~~~~------~~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.+.|  .+.+.|++..  ..+                  ..++....      ...|.|.++..+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (225)
T 1op3_H           10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE   89 (225)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCChh
Confidence            5688999999999998876  6789999853  110                  01233221      247999999999


Q ss_pred             CCeEEEEEEecCCC
Q psy15738        160 SAGIYLCVANNMVG  173 (187)
Q Consensus       160 d~g~y~C~~~n~~g  173 (187)
                      |+|.|.|.+.|..|
T Consensus        90 D~G~Y~C~~~~~~~  103 (225)
T 1op3_H           90 DTAIYYCARKGSDR  103 (225)
T ss_dssp             GCEEEEEEEECCSS
T ss_pred             hCEEEEEEEecCCC
Confidence            99999999999765

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.66  E-value=7e-08  Score=67.27  Aligned_cols=69  Identities=16%  Similarity=0.351  Sum_probs=51.0

Q ss_pred             CceEEEecCCcEEEEeEeccCC-----CCcEEEEeCC--eeC-------------CCCcEEEe----CcEEEEecCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP-----VPNITWTRKN--NNL-------------PGGEYSYS----GNSLTVRHTNRHS  160 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p-----~p~~~W~~~~--~~~-------------~~~~~~~~----~~~l~i~~~~~~d  160 (187)
                      +....+.+|+++.|.|.+.+.+     .+.+.|++..  ..+             ...+....    ...|.|.++..+|
T Consensus        22 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  101 (268)
T 1x9q_A           22 PLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAED  101 (268)
T ss_dssp             CSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhH
Confidence            4456678999999999998887     4789999853  111             01222211    2379999999999


Q ss_pred             CeEEEEEEecCCC
Q psy15738        161 AGIYLCVANNMVG  173 (187)
Q Consensus       161 ~g~y~C~~~n~~g  173 (187)
                      +|.|.|.+.|..+
T Consensus       102 sG~Y~C~~~~~~~  114 (268)
T 1x9q_A          102 LGVYFCSQSTHVP  114 (268)
T ss_dssp             CEEEEEEECSSSS
T ss_pred             CEEEEEEEecCCC
Confidence            9999999998754

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.66  E-value=8.2e-09  Score=69.86  Aligned_cols=66  Identities=17%  Similarity=0.214  Sum_probs=51.3

Q ss_pred             EecCCcEEEEeEeccC---CC-CcEEEEeCCeeCCCCcE----------EEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        110 VKKGYSVTLECKADGN---PV-PNITWTRKNNNLPGGEY----------SYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~---p~-p~~~W~~~~~~~~~~~~----------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +.+|+++.|.|.+.|.   |+ +.+.|++++..+.....          ......|.|.++..+|.|.|.|.+.|..+..
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~  102 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS  102 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence            5789999999999887   33 68999999976543211          1123568999999999999999999987643

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.66  E-value=1.7e-07  Score=58.17  Aligned_cols=81  Identities=21%  Similarity=0.387  Sum_probs=56.3

Q ss_pred             CceEEEecCCcEEEEeEeccCC-CCcEEEEeCC--eeC------C--------CCcEEEe------CcEEEEecCCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP-VPNITWTRKN--NNL------P--------GGEYSYS------GNSLTVRHTNRHSA  161 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p-~p~~~W~~~~--~~~------~--------~~~~~~~------~~~l~i~~~~~~d~  161 (187)
                      +..+.+.+|+.+.|.|...+.. ...+.|++..  ...      .        .+++...      ...|.|.++..+|+
T Consensus         8 P~~~~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Ds   87 (129)
T 3rrq_A            8 PALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDS   87 (129)
T ss_dssp             CSEEEEETTSCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCCGGGC
T ss_pred             CCEEEEeCCCCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCChhHC
Confidence            4457788999999999987764 4578999732  110      0        1122221      24699999999999


Q ss_pred             eEEEEEEecCCCCcc---eeeEEEEEE
Q psy15738        162 GIYLCVANNMVGSSA---AASIALHVL  185 (187)
Q Consensus       162 g~y~C~~~n~~g~~~---s~~~~l~v~  185 (187)
                      |.|.|.+.+..+...   +..+.|.|.
T Consensus        88 g~Y~C~~~~~~~~~~~~~s~~~~L~V~  114 (129)
T 3rrq_A           88 GTYLCGAISLAPKLQIKESLRAELRVT  114 (129)
T ss_dssp             EEEEEEEEECGGGCEEEECCCEEEEEE
T ss_pred             EEEEEEEEecCCCceeeEeceEEEEEe
Confidence            999999998766441   346777775

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.65  E-value=5.4e-07  Score=59.39  Aligned_cols=107  Identities=16%  Similarity=0.215  Sum_probs=69.8

Q ss_pred             eeEEEEEecccceeEEeec--cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEecc-CCCCc--EEEEeCCe
Q psy15738         63 SYILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADG-NPVPN--ITWTRKNN  137 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p~--~~W~~~~~  137 (187)
                      ..+..|.  |.|.|.|...  +......+.|+|+.+|........ ...+..|+.++|.|.+.+ .|...  +.|++++.
T Consensus        54 l~l~~vs--~~g~~~C~~~c~~~~~~~~~~itVy~~P~~v~i~~~-p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~  130 (192)
T 1zxq_A           54 YLVSNIS--HDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ-PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNE  130 (192)
T ss_dssp             EEEEEEC--SCEEEEEEEEETTEEEEEEEEEEECBCCCCCEEEEE-SSEECTTSEEEEEEEECSCBCGGGEEEEEEETTE
T ss_pred             EEEeccc--cCCeeEEEEECCCcceEEEEEEEEEeCCCCceEccC-CccccCCCcEEEEEEeCCeECCCCcEEEEEcCCE
Confidence            3356666  7888999443  456678899999988865433211 124788999999999975 56555  79999887


Q ss_pred             eCCCCcEE-----EeCcE-EEEecCCCCCCe-EEEEEEecCC
Q psy15738        138 NLPGGEYS-----YSGNS-LTVRHTNRHSAG-IYLCVANNMV  172 (187)
Q Consensus       138 ~~~~~~~~-----~~~~~-l~i~~~~~~d~g-~y~C~~~n~~  172 (187)
                      .+......     ....+ .....+.++|.| .|.|.|.-..
T Consensus       131 ~l~~~~f~~~~~~~~~~tv~~~~~~~r~D~g~~~sC~A~L~L  172 (192)
T 1zxq_A          131 TLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDL  172 (192)
T ss_dssp             EEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEEC
T ss_pred             EeeecccccccCcCcceEEEEEEecchhhCCceEEEEEEecC
Confidence            65321100     00111 223456667776 9999999665

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.65  E-value=8.8e-08  Score=64.21  Aligned_cols=65  Identities=22%  Similarity=0.350  Sum_probs=48.4

Q ss_pred             EEEecCCcEEEEeEeccCC--CCcEEEEeCC--eeC-----------------CCCcEEEe------CcEEEEecCCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNP--VPNITWTRKN--NNL-----------------PGGEYSYS------GNSLTVRHTNRHS  160 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~--~~~-----------------~~~~~~~~------~~~l~i~~~~~~d  160 (187)
                      ..+.+|+++.|.|.+.+.|  .+.+.|+++.  ...                 ...+....      ...|.|.++..+|
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   89 (210)
T 3d9a_H           10 SLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTED   89 (210)
T ss_dssp             SEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCccc
Confidence            4678999999999999875  4789999853  111                 01233221      1389999999999


Q ss_pred             CeEEEEEEecCC
Q psy15738        161 AGIYLCVANNMV  172 (187)
Q Consensus       161 ~g~y~C~~~n~~  172 (187)
                      +|.|.|.+.|..
T Consensus        90 ~G~Y~C~~~~~~  101 (210)
T 3d9a_H           90 TATYYCANWDGD  101 (210)
T ss_dssp             CEEEEEEETTSS
T ss_pred             CEEEEEEEecCc
Confidence            999999999864

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=98.64  E-value=2.7e-07  Score=56.96  Aligned_cols=70  Identities=21%  Similarity=0.365  Sum_probs=50.5

Q ss_pred             CceEEEecCCcEEEEeEeccC--CCCcEEEEeC--CeeC-----CCCcEEE------eCcEEEEecCCCCCCeEEEEEEe
Q psy15738        105 AGKVEVKKGYSVTLECKADGN--PVPNITWTRK--NNNL-----PGGEYSY------SGNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~--p~p~~~W~~~--~~~~-----~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      +....+.+|+++.|.|...+.  +.+.+.|++.  +...     ..+++..      ....|.|.++..+|+|.|.|.+.
T Consensus         7 p~~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~   86 (126)
T 3moq_A            7 PRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAF   86 (126)
T ss_dssp             CSEEEEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CceEEEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceEEEEeCCcEEEEEeCCCCEEEEEECcCChHhCEEEEEEEE
Confidence            445678999999999999765  4567999984  2211     1122221      12479999999999999999999


Q ss_pred             cCCCC
Q psy15738        170 NMVGS  174 (187)
Q Consensus       170 n~~g~  174 (187)
                      +..+.
T Consensus        87 ~~~~~   91 (126)
T 3moq_A           87 YVFFA   91 (126)
T ss_dssp             EEEET
T ss_pred             EcCCC
Confidence            87653

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.64  E-value=9.8e-08  Score=65.90  Aligned_cols=80  Identities=21%  Similarity=0.296  Sum_probs=54.2

Q ss_pred             ceEEEecCCcEEEEeEeccCC--CCcEEEEeCC--eeC------------------CCCcEEEe------CcEEEEecCC
Q psy15738        106 GKVEVKKGYSVTLECKADGNP--VPNITWTRKN--NNL------------------PGGEYSYS------GNSLTVRHTN  157 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~--~~~------------------~~~~~~~~------~~~l~i~~~~  157 (187)
                      ....+.+|+++.|.|.+.+.+  .+.+.|++..  ..+                  ...+....      ...|.|.++.
T Consensus         9 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   88 (253)
T 3uzq_A            9 GAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLT   88 (253)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCC
Confidence            346788999999999998854  6789999832  110                  01122211      1249999999


Q ss_pred             CCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        158 RHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       158 ~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      .+|+|.|.|.+.|..+........|.|.
T Consensus        89 ~~DsG~Y~C~~~~~~~~~~~~~~~l~V~  116 (253)
T 3uzq_A           89 SGDTAVYYCSRGWEGFAYWGQGTLVTVS  116 (253)
T ss_dssp             GGGCEEEEEEECSSSCCEECCCEEEEEC
T ss_pred             cccCEEEEEEEeeCCccEECCCcEEEEe
Confidence            9999999999999655442344455553

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.64  E-value=2.9e-07  Score=63.10  Aligned_cols=66  Identities=17%  Similarity=0.336  Sum_probs=48.4

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEe--------------CCeeC--C---CCcEEEe-----CcEEEEecCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTR--------------KNNNL--P---GGEYSYS-----GNSLTVRHTNRHS  160 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~--------------~~~~~--~---~~~~~~~-----~~~l~i~~~~~~d  160 (187)
                      +....+.+|+++.|.| ..+.+.+.+.|++              ++...  .   ..+....     ...|.|.++..+|
T Consensus         9 p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D   87 (245)
T 4ei6_B            9 PSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALED   87 (245)
T ss_dssp             CSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGG
T ss_pred             CceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhH
Confidence            4456788999999999 6677888999998              22111  0   1333221     2379999999999


Q ss_pred             CeEEEEEEecC
Q psy15738        161 AGIYLCVANNM  171 (187)
Q Consensus       161 ~g~y~C~~~n~  171 (187)
                      +|.|.|.+.+.
T Consensus        88 ~G~Y~C~~~~~   98 (245)
T 4ei6_B           88 SAVYFCASSFW   98 (245)
T ss_dssp             CEEEEEEEECS
T ss_pred             CEEEEEEEccC
Confidence            99999999963

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=98.64  E-value=3.7e-08  Score=70.29  Aligned_cols=76  Identities=24%  Similarity=0.322  Sum_probs=57.1

Q ss_pred             EEEecCCcEEEEeEeccC-----CCCcEEEEeCCeeCCCCcEE--EeC---cEEEEecCCCCCCeEEEEEEecCCCCcce
Q psy15738        108 VEVKKGYSVTLECKADGN-----PVPNITWTRKNNNLPGGEYS--YSG---NSLTVRHTNRHSAGIYLCVANNMVGSSAA  177 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~-----p~p~~~W~~~~~~~~~~~~~--~~~---~~l~i~~~~~~d~g~y~C~~~n~~g~~~s  177 (187)
                      ..+..|+.+.|.|.+.+.     |.+.+.|++++..+......  ...   +.|.|.++...|+|.|.|.+.+..+.. +
T Consensus        10 ~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~~-~   88 (313)
T 2d9q_B           10 PIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQI-L   88 (313)
T ss_dssp             SEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTCEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEEE-E
T ss_pred             cEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCccceEEEecCeEEEEEEEeccCCCccceEEeeecCCCcee-E
Confidence            467899999999999986     56889999999877554321  111   569999999999999999887654433 3


Q ss_pred             eeEEEEE
Q psy15738        178 ASIALHV  184 (187)
Q Consensus       178 ~~~~l~v  184 (187)
                      ..+.|.|
T Consensus        89 ~~~~l~v   95 (313)
T 2d9q_B           89 DQVELRA   95 (313)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEcc
Confidence            4555554

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=98.64  E-value=9.4e-08  Score=68.58  Aligned_cols=75  Identities=24%  Similarity=0.394  Sum_probs=56.7

Q ss_pred             EEEecCCcEEEEeEeccCC-CCcEEEEeCCeeCCCC--cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        108 VEVKKGYSVTLECKADGNP-VPNITWTRKNNNLPGG--EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p-~p~~~W~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      ..+..|+.+.|.|.+.+.+ .+.+.|++++..+...  +.....+.|.|.++...|+|.|.|.+   .|.. ...+.|.|
T Consensus        16 v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~---~g~~-~~~~~L~V   91 (325)
T 1n26_A           16 LTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYR---AGRP-AGTVHLLV   91 (325)
T ss_dssp             EEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEES---SSSC-SCEEEEEE
T ss_pred             EECCCCCcEEEEeCCCCCCCCceEEEEECCccCCccccccccccceEEecccchhhCeEeEEEe---CCEE-eeeEEEEe
Confidence            3446899999999988765 6799999988764222  22335678999999999999999993   5655 46777777


Q ss_pred             Ee
Q psy15738        185 LC  186 (187)
Q Consensus       185 ~~  186 (187)
                      ..
T Consensus        92 ~~   93 (325)
T 1n26_A           92 DV   93 (325)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=98.64  E-value=4.5e-08  Score=57.96  Aligned_cols=32  Identities=9%  Similarity=0.011  Sum_probs=23.6

Q ss_pred             eeEEEEEecccceeEEee--ccceeeEEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKK--RKKRKKKKKKKEKR   94 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~   94 (187)
                      +.|..++.+|.|.|+|.+  ..+..+..+.|.|.
T Consensus        65 L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           65 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR   98 (100)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEcCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence            347788899999999944  45556667777775

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=98.07  E-value=3.6e-09  Score=63.89  Aligned_cols=67  Identities=16%  Similarity=0.375  Sum_probs=49.4

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-------------CCCcEEE------eCcEEEEecCCCCCCeE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-------------PGGEYSY------SGNSLTVRHTNRHSAGI  163 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-------------~~~~~~~------~~~~l~i~~~~~~d~g~  163 (187)
                      +....+.+|+++.|.|.+.+.+.+.+.|++...  ..             ..++...      ....|.|.++..+|+|.
T Consensus         6 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~   85 (110)
T 1u3h_A            6 PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSAT   85 (110)
Confidence            334568899999999999887778899998642  11             0111111      12479999999999999


Q ss_pred             EEEEEecC
Q psy15738        164 YLCVANNM  171 (187)
Q Consensus       164 y~C~~~n~  171 (187)
                      |.|.+.+.
T Consensus        86 Y~C~~~~~   93 (110)
T 1u3h_A           86 YFCAASAN   93 (110)
Confidence            99999875

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.63  E-value=1.4e-07  Score=63.76  Aligned_cols=66  Identities=21%  Similarity=0.337  Sum_probs=49.1

Q ss_pred             EEEecCCcEEEEeEeccCC--CCcEEEEeCC--eeC--------------------CCCcEEEe------CcEEEEecCC
Q psy15738        108 VEVKKGYSVTLECKADGNP--VPNITWTRKN--NNL--------------------PGGEYSYS------GNSLTVRHTN  157 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~--~~~--------------------~~~~~~~~------~~~l~i~~~~  157 (187)
                      ..+.+|+++.|.|.+.+.|  .+.+.|++..  ...                    ...+....      ...|.|.++.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   89 (222)
T 1q9r_B           10 GLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR   89 (222)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             eeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcCC
Confidence            4678999999999998875  6789999853  110                    01222221      2379999999


Q ss_pred             CCCCeEEEEEEecCCC
Q psy15738        158 RHSAGIYLCVANNMVG  173 (187)
Q Consensus       158 ~~d~g~y~C~~~n~~g  173 (187)
                      .+|+|.|.|.+.|..+
T Consensus        90 ~~D~G~Y~C~~~~~~~  105 (222)
T 1q9r_B           90 AEDSATYYCARDHDGY  105 (222)
T ss_dssp             GGGCEEEEEEECCCSS
T ss_pred             cccCeEEEEEEeccCC
Confidence            9999999999998764

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=98.62  E-value=2.1e-07  Score=66.06  Aligned_cols=65  Identities=15%  Similarity=0.216  Sum_probs=51.7

Q ss_pred             ceEEEecCCcEEEEeEecc-------CCCCcEEEEeCCeeCCCCcEEE-e--CcEEEEecCCCCCCeEEEEEEecC
Q psy15738        106 GKVEVKKGYSVTLECKADG-------NPVPNITWTRKNNNLPGGEYSY-S--GNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g-------~p~p~~~W~~~~~~~~~~~~~~-~--~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      ....+..|+.+.|.|.+.+       .|.|.+.|+++|..+...++.. .  .+.|.|.++...+ |.|.|.|.+.
T Consensus        12 ~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~~~~~~~~~~~~L~i~~~~~~~-g~Y~C~a~~~   86 (303)
T 1i1r_A           12 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLN-IQLTCNILTF   86 (303)
T ss_dssp             SSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGGGCEEEETTEEEEEECSCCCSE-EEEEEEEEET
T ss_pred             CCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChhheeeeCCcEEEEEEcCcCCCc-eEEEEecccC
Confidence            3456889999999999986       4778999999999886554332 2  2479999998874 9999999874

>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.60  E-value=5.3e-08  Score=54.62  Aligned_cols=64  Identities=17%  Similarity=0.266  Sum_probs=42.1

Q ss_pred             EecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      ...|+.+.|.|      .+.+.|++++..+...    ...+|.|.+....++|.|.|.+.+..+...+   .|.|.+
T Consensus         6 ~~~g~~V~LtC------~~~i~W~k~~~~i~~~----~~~tL~L~~~~~d~sG~Y~C~~~~~~~~~~s---~LqV~y   69 (79)
T 1xiw_B            6 EELEDRVFVNC------NTSITWVEGTVGTLLS----DITRLDLGKRILDPRGIYRCNGTDIYKDKES---TVQVHY   69 (79)
T ss_dssp             EEETTEEEEEC------SSCEEEEEECCCEEEG----GGTEEEEEEGGGCCEEEEEEC--------CE---EEEEEE
T ss_pred             EECCCEEEEEc------CCCEEEEECCcccccc----cCCeEEeccCcCCCCeEEEecCCCCCCcccE---EEEEEh
Confidence            36789999999      4569999998654321    3478899888888999999999998876532   455554

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.59  E-value=2e-07  Score=62.89  Aligned_cols=67  Identities=27%  Similarity=0.480  Sum_probs=49.8

Q ss_pred             eEEEecCCcEEEEeEeccCC--CCcEEEEeCC--ee---C----C-------------CCcEEEe------CcEEEEecC
Q psy15738        107 KVEVKKGYSVTLECKADGNP--VPNITWTRKN--NN---L----P-------------GGEYSYS------GNSLTVRHT  156 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~--~~---~----~-------------~~~~~~~------~~~l~i~~~  156 (187)
                      ...+.+|+++.|.|.+.+.+  .+.+.|++++  ..   +    .             ..+....      ...|.|.++
T Consensus         9 ~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   88 (220)
T 1pz5_B            9 GGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNL   88 (220)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccC
Confidence            35678999999999998876  6789999853  11   0    0             1233221      127999999


Q ss_pred             CCCCCeEEEEEEecCCC
Q psy15738        157 NRHSAGIYLCVANNMVG  173 (187)
Q Consensus       157 ~~~d~g~y~C~~~n~~g  173 (187)
                      ..+|+|.|.|.+.|..+
T Consensus        89 ~~~D~G~Y~C~~~~~~~  105 (220)
T 1pz5_B           89 RAEDTGIYYCTRGGAVG  105 (220)
T ss_dssp             CGGGCEEEEEEEECTTS
T ss_pred             CHHHCEEEEEEEecCCc
Confidence            99999999999999754

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.59  E-value=5.3e-07  Score=61.86  Aligned_cols=69  Identities=17%  Similarity=0.407  Sum_probs=50.8

Q ss_pred             CCceEEEecCCcEEEEeEeccC--CCCcEEEEeCC--eeC------------------CCCcEEEe------CcEEEEec
Q psy15738        104 GAGKVEVKKGYSVTLECKADGN--PVPNITWTRKN--NNL------------------PGGEYSYS------GNSLTVRH  155 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~--p~p~~~W~~~~--~~~------------------~~~~~~~~------~~~l~i~~  155 (187)
                      .+....+.+|+++.|.|.+.+.  +.+.+.|++..  ...                  ..++....      ...|.|.+
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (242)
T 1hxm_B            7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHN   86 (242)
T ss_dssp             CCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECS
T ss_pred             CCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECC
Confidence            3445678899999999999875  56789999853  111                  12233221      24799999


Q ss_pred             CCCCCCeEEEEEEecCC
Q psy15738        156 TNRHSAGIYLCVANNMV  172 (187)
Q Consensus       156 ~~~~d~g~y~C~~~n~~  172 (187)
                      +..+|+|.|.|.+.+..
T Consensus        87 v~~~D~G~Y~C~~~~~~  103 (242)
T 1hxm_B           87 VEKQDIATYYCALWEAQ  103 (242)
T ss_dssp             CCGGGCEEEEEEEEEEC
T ss_pred             CCcccCEEEEEeeecCC
Confidence            99999999999999863

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.59  E-value=2.3e-08  Score=67.46  Aligned_cols=64  Identities=19%  Similarity=0.302  Sum_probs=48.5

Q ss_pred             EEEecCCcEEEEeEeccCCC-----CcEEEEeCCeeC--------------CCCcEEEe-------CcEEEEecCCCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPV-----PNITWTRKNNNL--------------PGGEYSYS-------GNSLTVRHTNRHSA  161 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~-----p~~~W~~~~~~~--------------~~~~~~~~-------~~~l~i~~~~~~d~  161 (187)
                      ..+.+|+.+.|.|.+.+.|.     +.+.|++++...              ...+....       ...|.|.+++.+|.
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~   84 (222)
T 4i0k_A            5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE   84 (222)
T ss_dssp             CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred             EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence            45678999999999988754     679999987432              11122111       45799999999999


Q ss_pred             eEEEEEEecC
Q psy15738        162 GIYLCVANNM  171 (187)
Q Consensus       162 g~y~C~~~n~  171 (187)
                      |.|.|.+.+.
T Consensus        85 G~Y~C~~~~~   94 (222)
T 4i0k_A           85 GSYTCFVSIQ   94 (222)
T ss_dssp             SCEEEEEEEC
T ss_pred             EEEEEEEEeC
Confidence            9999999985

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.59  E-value=4.9e-07  Score=61.81  Aligned_cols=65  Identities=14%  Similarity=0.300  Sum_probs=47.2

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCC--------------eeC----CCCcEEE-----eCcEEEEecCCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKN--------------NNL----PGGEYSY-----SGNSLTVRHTNRHSA  161 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--------------~~~----~~~~~~~-----~~~~l~i~~~~~~d~  161 (187)
                      +....+.+|+++.|.|.+.+ +.+.+.|++..              ...    ...+...     ....|.|.++..+|+
T Consensus         9 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   87 (240)
T 3q5y_A            9 PRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDS   87 (240)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred             cceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHC
Confidence            34567889999999999876 77899999822              110    0112221     124799999999999


Q ss_pred             eEEEEEEec
Q psy15738        162 GIYLCVANN  170 (187)
Q Consensus       162 g~y~C~~~n  170 (187)
                      |.|.|.+.+
T Consensus        88 G~Y~C~~~~   96 (240)
T 3q5y_A           88 AMYFCASSL   96 (240)
T ss_dssp             EEEEEEEES
T ss_pred             EEEEEEEcc
Confidence            999999983

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.58  E-value=1.7e-07  Score=64.77  Aligned_cols=67  Identities=19%  Similarity=0.422  Sum_probs=49.2

Q ss_pred             CceEEEecCCcEEEEeEeccC--CCCcEEEEeCC--eeC------------------CCCcEEEe------CcEEEEecC
Q psy15738        105 AGKVEVKKGYSVTLECKADGN--PVPNITWTRKN--NNL------------------PGGEYSYS------GNSLTVRHT  156 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~--p~p~~~W~~~~--~~~------------------~~~~~~~~------~~~l~i~~~  156 (187)
                      +....+.+|+++.|.|.+.+.  +.+.+.|++..  ...                  ...+....      ...|.|.++
T Consensus        13 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   92 (256)
T 3juy_B           13 SGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL   92 (256)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECCC
Confidence            445778999999999999884  56789999743  110                  01122221      135999999


Q ss_pred             CCCCCeEEEEEEecC
Q psy15738        157 NRHSAGIYLCVANNM  171 (187)
Q Consensus       157 ~~~d~g~y~C~~~n~  171 (187)
                      ..+|+|.|.|.+.|.
T Consensus        93 ~~~DsG~Y~C~~~~~  107 (256)
T 3juy_B           93 RSADTAVYYCARVGE  107 (256)
T ss_dssp             CGGGCEEEEEEECCC
T ss_pred             CcccCEEEEEeEEec
Confidence            999999999999986

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.58  E-value=1.1e-07  Score=65.81  Aligned_cols=64  Identities=17%  Similarity=0.335  Sum_probs=46.9

Q ss_pred             EEEecCCcEEEEeEeccC--CCCcEEEEeCCe--e---C--------------CCCcEEEe------CcEEEEecCCCCC
Q psy15738        108 VEVKKGYSVTLECKADGN--PVPNITWTRKNN--N---L--------------PGGEYSYS------GNSLTVRHTNRHS  160 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~--p~p~~~W~~~~~--~---~--------------~~~~~~~~------~~~l~i~~~~~~d  160 (187)
                      ..+.+|+++.|.|.+.+.  +.+.+.|++...  .   +              ...+....      ...|.|.++..+|
T Consensus        18 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   97 (257)
T 3gkz_A           18 SLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSED   97 (257)
T ss_dssp             SEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChhh
Confidence            457899999999999884  467899998431  0   0              01122211      1269999999999


Q ss_pred             CeEEEEEEecC
Q psy15738        161 AGIYLCVANNM  171 (187)
Q Consensus       161 ~g~y~C~~~n~  171 (187)
                      +|.|.|.+.|.
T Consensus        98 sG~Y~C~~~n~  108 (257)
T 3gkz_A           98 TATYYCSYFDS  108 (257)
T ss_dssp             CEEEEEEEECT
T ss_pred             CEEEEEEEecC
Confidence            99999999997

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.57  E-value=3.4e-07  Score=61.89  Aligned_cols=67  Identities=21%  Similarity=0.370  Sum_probs=49.6

Q ss_pred             eEEEecCCcEEEEeEeccCC--CCcEEEEeCCe--e---C---------------CCCcEEEe------CcEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNP--VPNITWTRKNN--N---L---------------PGGEYSYS------GNSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~~--~---~---------------~~~~~~~~------~~~l~i~~~~~  158 (187)
                      ...+.+|+++.|.|.+.+.+  .+.+.|++...  .   +               ..++....      ...|.|.++..
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (220)
T 2fbj_H            9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (220)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCCh
Confidence            35788999999999998876  57899998531  1   0               01233221      13799999999


Q ss_pred             CCCeEEEEEEecCCC
Q psy15738        159 HSAGIYLCVANNMVG  173 (187)
Q Consensus       159 ~d~g~y~C~~~n~~g  173 (187)
                      +|+|.|.|.+.+..+
T Consensus        89 ~DsG~Y~C~~~~~~~  103 (220)
T 2fbj_H           89 EDTALYYCARLHYYG  103 (220)
T ss_dssp             GGCEEEEEEEEETTT
T ss_pred             hhCEEEEEEEecccc
Confidence            999999999998754

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.57  E-value=4.8e-07  Score=63.43  Aligned_cols=68  Identities=24%  Similarity=0.437  Sum_probs=51.1

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC------------------CCCcEEEe-----CcEEEEecCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL------------------PGGEYSYS-----GNSLTVRHTNRH  159 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~------------------~~~~~~~~-----~~~l~i~~~~~~  159 (187)
                      +....+.+|+++.|.|.+.+.|.+.+.|++++.  ..                  ...+....     ...|.|.++..+
T Consensus        31 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~  110 (279)
T 2wbj_D           31 PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPE  110 (279)
T ss_dssp             CSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGG
T ss_pred             CCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCcc
Confidence            445678999999999999888888999998641  10                  01222221     237999999999


Q ss_pred             CCeEEEEEEecCC
Q psy15738        160 SAGIYLCVANNMV  172 (187)
Q Consensus       160 d~g~y~C~~~n~~  172 (187)
                      |+|.|.|.+.|..
T Consensus       111 D~G~Y~C~~~~~~  123 (279)
T 2wbj_D          111 DSSFYICSARDLT  123 (279)
T ss_dssp             GCEEEEEEEEETT
T ss_pred             CCEEEEEEEcccc
Confidence            9999999999953

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	187
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	4e-17
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	4e-17
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	6e-17
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-15
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-15
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	9e-14
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-13
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	1e-12
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-12
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-12
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	3e-12
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	2e-11
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-11
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-11
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-11
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	9e-11
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	1e-10
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-10
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-10
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	2e-10
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	4e-10
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	5e-10
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	6e-10
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	3e-09
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	5e-09
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	6e-09
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	9e-09
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	1e-08
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	2e-08
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-08
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	1e-07
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	1e-07
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	1e-07
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	3e-07
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	3e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	4e-07
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	6e-07
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	6e-07
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	1e-06
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	2e-06
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	2e-06
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	3e-06
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	4e-06
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	4e-06
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	4e-06
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	4e-06
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	5e-06
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	8e-06
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-05
d2fcba1	85	b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD3	2e-05
d1vcaa2	90	b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1	2e-05
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	2e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	4e-05
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	1e-04
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	5e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	8e-04
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	0.001

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 70.6 bits (172), Expect = 4e-17
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 93  KRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLT 152
           ++  P I             G  VTLEC A GNPVP I W + + +      S     L 
Sbjct: 1   RQYAPSIK-AKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEP-LLH 58

Query: 153 VRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184
           +++ +    G Y C A N+ G        + +
Sbjct: 59  IQNVDFEDEGTYECEAENIKG-RDTYQGRIII 89

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.7 bits (172), Expect = 4e-17
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 95  IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSY-------S 147
           +PP +             G SVTL C ADG P P ++WT+    +   E           
Sbjct: 2   VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 61

Query: 148 GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK 187
            + LT+R+ +++    Y+C+A N  G    ASI L V  K
Sbjct: 62  SSELTIRNVDKNDEAEYVCIAENKAG-EQDASIHLKVFAK 100

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 70.2 bits (171), Expect = 6e-17
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 96  PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRH 155
            P+         + VK+G  VT+ CK  G P PN+ W+     L GG  + + + L ++ 
Sbjct: 2   APKYE-QKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKG 60

Query: 156 TNRHSAGIYLCVANNMVGSSAAASIALHV 184
                 G Y C A N  G        + V
Sbjct: 61  VKNGDKGYYGCRATNEHG-DKYFETLVQV 88

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 1e-15
 Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 7/84 (8%)

Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE------YSYSGNSLTVRHTNRHSA 161
             V    +V   C A GNP+P + W +                     SL +        
Sbjct: 15  HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 74

Query: 162 GIYLCVANNMVGSSAAASIALHVL 185
           G Y CV  N  G S   +  L V+
Sbjct: 75  GNYTCVVENEYG-SINHTYHLDVV 97

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (159), Expect = 4e-15
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 8/96 (8%)

Query: 97  PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-----YSYSGNSL 151
           P+I  +      +V+ G SV L  K  G      TW +    +   E      S +G+ L
Sbjct: 1   PQI--IQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKL 58

Query: 152 TVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK 187
           T+    +   G Y  +  N +G S  A + L V+ K
Sbjct: 59  TILAARQEHCGCYTLLVENKLG-SRQAQVNLTVVDK 93

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 62.2 bits (150), Expect = 9e-14
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG-------GEYSYSGNSLTVRHTNRHS 160
           +  K G    + C    NP+    + +   ++ G            SG  L  + T    
Sbjct: 13  MMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPED 72

Query: 161 AGIYLCVANNMVGSSAAASIALHVL 185
            G+Y C  +N VG     S+ L V+
Sbjct: 73  EGVYTCEVDNGVGKPQKHSLKLTVV 97

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.5 bits (148), Expect = 1e-13
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 97  PRIIYVSGAGKVEVKKGYSVTLECKAD-GNPVPNITWTRKNNNLPGGEYSYSGNSLTVRH 155
           P ++ V       V+ G  VT  C A   +P   + WTR +N             LT+R+
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRN 60

Query: 156 TNRHSAGIYLCVANNMVGSSAAASIALHV 184
                AG Y+C  +NM       +  LHV
Sbjct: 61  VQPSDAGTYVCTGSNMFA-MDQGTATLHV 88

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (141), Expect = 1e-12
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 9/90 (10%)

Query: 96  PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRH 155
            PR+      G     +    T  C+A GNP+P +   +          ++         
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKD--------GTFPLPIGESVT 53

Query: 156 TNRHSAGIYLCVANNMVGSSAAASIALHVL 185
             R   G YLC A +  G      + ++VL
Sbjct: 54  VTRDLEGTYLCRARSTQG-EVTREVTVNVL 82

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 2e-12
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSY-------SGNSLTVRHTNRHS 160
           + V +G  V L C  +G   P+I W +    +   +  Y           L+++   R  
Sbjct: 6   LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSD 65

Query: 161 AGIYLCVANNMVGSSAAASIALHV 184
           AG Y C   +   +  +  + L V
Sbjct: 66  AGRYWCQVEDGGETEISQPVWLTV 89

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 58.0 bits (139), Expect = 2e-12
 Identities = 23/78 (29%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNN-NLPGGEYSYSGNSLTVRHTNRHSAGIYLC 166
            E   G  +   C A G P P + W R             SG  L         +G+Y C
Sbjct: 11  TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQC 70

Query: 167 VANNMVGSSAAASIALHV 184
           VA N  G +  AS  L V
Sbjct: 71  VAENKHG-TVYASAELTV 87

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 3e-12
 Identities = 23/110 (20%), Positives = 32/110 (29%), Gaps = 20/110 (18%)

Query: 94  RIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLP------------- 140
           R  P I+            G  V   CK   +  P+I W +                   
Sbjct: 2   RHRP-ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKV 60

Query: 141 -----GGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185
                          L +R+     AG Y C+A N +G  +  S  L VL
Sbjct: 61  LKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG-ISFHSAWLTVL 109

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.2 bits (134), Expect = 2e-11
 Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 17/104 (16%)

Query: 95  IPPRIIYVSGAGKVEVKKGYSVTLECKA-DGNPVPNITWTRKNNNLPGGEYSY------- 146
           +PP    +S      V  G    L C   DG+P    +W +   ++   +          
Sbjct: 1   VPPSKPTISV--PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS 58

Query: 147 ------SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184
                     L         +G Y C A N  G +A  S A H+
Sbjct: 59  SFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG-TAMRSEAAHM 101

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 3e-11
 Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 6/82 (7%)

Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-----YSYSGNSLTVRHTNRHSAG 162
           + V +G S    C  DG PVP +TW RK   L          +   ++  +        G
Sbjct: 9   MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEG 68

Query: 163 IYLCVANNMVGSSAAASIALHV 184
            Y  V  N  G    A   L +
Sbjct: 69  NYSVVVENSEG-KQEAEFTLTI 89

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 3e-11
 Identities = 19/130 (14%), Positives = 36/130 (27%), Gaps = 38/130 (29%)

Query: 93  KRIPPRIIYVSGAGK---VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG------- 142
           ++ PP+I           + V  G  + L+    G+P P + W +               
Sbjct: 1   RQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPD 60

Query: 143 ---------------------------EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS 175
                                      E +   +  TV    +   G+Y     N VG  
Sbjct: 61  APEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVG-E 119

Query: 176 AAASIALHVL 185
              ++ + V+
Sbjct: 120 DQVNLTVKVI 129

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.3 bits (132), Expect = 3e-11
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG-----GEYSYSGNSLTVRHTNRHSAG 162
            EV +G S    C+   +  P +TW + +  L         Y+ +   LT+        G
Sbjct: 11  TEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKG 70

Query: 163 IYLCVANNMVGSSAAASIALHV 184
            Y   A N  G +    + L+V
Sbjct: 71  EYTVRAKNSYG-TKEEIVFLNV 91

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.1 bits (129), Expect = 9e-11
 Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSY----SGNSLTVRHTNRHSAGI 163
            E      VTL C+A  NP     W      L  G  S     +G+ +         AG 
Sbjct: 17  PEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGS 76

Query: 164 YLCVANNMVGSSAAASIAL 182
           Y CVA N  G+  +   +L
Sbjct: 77  YQCVATNARGTVVSREASL 95

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 1e-10
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 15/101 (14%)

Query: 96  PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY---------SY 146
           PPR++ +      E +      +E    GNP P + W      L   +            
Sbjct: 5   PPRVVSLE-----EPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEI 59

Query: 147 SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK 187
           S   L       ++ G Y  +A N +G +A  +I  H L +
Sbjct: 60  SEGCLLFNKPTHYNNGNYTLIAKNPLG-TANQTINGHFLKE 99

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 2e-10
 Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 9/98 (9%)

Query: 96  PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNS----- 150
            P+I          V +G       +  G P P   W +    +   +  Y         
Sbjct: 4   APKI--FERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVC 61

Query: 151 -LTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK 187
            L +R      +   +  A N+ G   ++   L V  K
Sbjct: 62  ELVIRDVTGEDSASIMVKAINIAG-ETSSHAFLLVQAK 98

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 2e-10
 Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 16/103 (15%)

Query: 95  IPPRIIYVSGAGKVEVKKGYSVTLECKA-DGNPVPNITWTRKNNNLPGGE---------- 143
           +PP    V+         G    L C   DG+P    TW +    +P             
Sbjct: 1   VPPSKPTVNI--PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSS 58

Query: 144 --YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184
              + +   L     +    G Y C A N  G +   S A+ +
Sbjct: 59  YVLNPTTGELVFDPLSASDTGEYSCEARNGYG-TPMTSNAVRM 100

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.1 bits (126), Expect = 2e-10
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 95  IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITW-----TRKNNNLPGGEYSYSGN 149
           + P+I+  + + K+++K G++  LE    G P P  TW               +   S  
Sbjct: 1   LKPKIL--TASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT 58

Query: 150 SLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184
           S+      R  +G Y     N +G    A   + V
Sbjct: 59  SIFFPSAKRADSGNYKLKVKNELG-EDEAIFEVIV 92

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 4e-10
 Identities = 16/104 (15%), Positives = 29/104 (27%), Gaps = 16/104 (15%)

Query: 94  RIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLP----------GGE 143
              P I ++           +   +     GNP P + W      L              
Sbjct: 2   HFAPTITFL-----ESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTN 56

Query: 144 YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK 187
           ++     L + +    + G Y  +A N  G      I+ H +  
Sbjct: 57  HTEYHGCLQLDNPTHMNNGDYTLIAKNEYG-KDEKQISAHFMGW 99

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 5e-10
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 13/91 (14%)

Query: 109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY------------SYSGNSLTVRHT 156
              + +   +    DG P P++ W    + L    +            +     L +   
Sbjct: 11  TAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP 70

Query: 157 NRHSAGIYLCVANNMVGSSAAASIALHVLCK 187
              + G Y  +A N  G  A+ASI    +  
Sbjct: 71  THVNNGNYTLLAANPFG-QASASIMAAFMDN 100

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 6e-10
 Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 8/85 (9%)

Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG--------EYSYSGNSLTVRHTNRH 159
           VEV  G   T +C A G  V       +  ++                  S  V +T + 
Sbjct: 11  VEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKR 70

Query: 160 SAGIYLCVANNMVGSSAAASIALHV 184
            AG Y C+     G   +    L V
Sbjct: 71  DAGKYRCMIRTEGGVGISNYAELVV 95

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 50.3 bits (119), Expect = 3e-09
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 91  KEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWT------RKNNNLPGGEY 144
           ++  + P          +EV +G +   +CK +G P P + W       +++ +      
Sbjct: 3   EKPHVKPYF--TKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD 60

Query: 145 SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184
                SLT+          Y C A N +G  A  +  L V
Sbjct: 61  EEGNCSLTISEVCGDDDAKYTCKAVNSLG-EATCTAELLV 99

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 5e-09
 Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 16/102 (15%)

Query: 96  PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS---------- 145
           PPR+   +      + +G +  L CK++  P        K  +                 
Sbjct: 2   PPRV--KAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVS 59

Query: 146 YSGNSLTVRHTN---RHSAGIYLCVANNMVGSSAAASIALHV 184
            S     +   N       G Y C   +  G S  A I L V
Sbjct: 60  SSQGRSELHIENLNMEADPGQYRCNGTSSKG-SDQAIITLRV 100

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 6e-09
 Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 11/89 (12%)

Query: 110 VKKGYSVTLEC------KADGNPVPNITWTRKNNNLP--GGEYSYSGNSLTVRHTNRHSA 161
           +       L C      K + N +P + W +    L      +S   + L V +      
Sbjct: 11  LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHR 70

Query: 162 GIYLCVANNMVGS---SAAASIALHVLCK 187
           G Y C A+             I    L +
Sbjct: 71  GNYTCHASYTYLGKQYPITRVIEFITLEE 99

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 9e-09
 Identities = 18/85 (21%), Positives = 24/85 (28%), Gaps = 4/85 (4%)

Query: 96  PPRIIYVSGA-GKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG---GEYSYSGNSL 151
           P R      A G +    G SVTL C                    G     ++  G  L
Sbjct: 3   PRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRL 62

Query: 152 TVRHTNRHSAGIYLCVANNMVGSSA 176
            +R    H +G Y C        + 
Sbjct: 63  LLRSVQLHDSGNYSCYRAGRPAGTV 87

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 1e-08
 Identities = 14/77 (18%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 109 EVKKGYSVTLECKADGN-PVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCV 167
           E ++G ++ L C +  + P+  +T+ +   +     +S S  + ++   N   +G Y C 
Sbjct: 11  EFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKK---FSRSDPNFSIPQANHSHSGDYHCT 67

Query: 168 ANNMVGSSAAASIALHV 184
            N      ++  + + V
Sbjct: 68  GNIGYTLYSSKPVTITV 84

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 2e-08
 Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 8/74 (10%)

Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-------YSYSGNSLTVRHTNRHS 160
                G  V LEC+       N+ W +    +  G             + L +    +  
Sbjct: 10  TTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKAD 68

Query: 161 AGIYLCVANNMVGS 174
           A  Y  +      S
Sbjct: 69  AAEYSVMTTGGQSS 82

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.6 bits (112), Expect = 2e-08
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 5/82 (6%)

Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY----SYSGNSLTVRHTNRHSAGI 163
            E K+G    + C    +  P I W  K  ++   +       S N L +R   +   G 
Sbjct: 11  QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGT 70

Query: 164 YLCVANNMVGS-SAAASIALHV 184
           Y C    +         I + V
Sbjct: 71  YRCEGRILARGEINFKDIQVIV 92

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 1e-07
 Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 14/92 (15%)

Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLP-------------GGEYSYSGNSLTVR 154
           V + +   V L C   G   P + W     +                   ++    +T +
Sbjct: 14  VRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFK 73

Query: 155 HTNRHSAGIYLCVANNMVGS-SAAASIALHVL 185
              R   G Y C+ +   G+      + L VL
Sbjct: 74  SVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL 105

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (107), Expect = 1e-07
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 14/92 (15%)

Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNN-------------LPGGEYSYSGNSLTVR 154
           V+V +  S+ L C   G   P + W     +                   ++S + +T  
Sbjct: 11  VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFS 70

Query: 155 HTNRHSAGIYLCVANNMVGS-SAAASIALHVL 185
              R   G Y C+ +   G      SI L VL
Sbjct: 71  SVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 1e-07
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 11/97 (11%)

Query: 100 IYVSGAGKVEVKKGYSVTLECKADGNPV-PNITWTRKNNNLPGGEY-------SYSGNSL 151
           +Y+    +  +  G    LEC        P++TW + N                    S 
Sbjct: 5   LYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISF 64

Query: 152 TVRH---TNRHSAGIYLCVANNMVGSSAAASIALHVL 185
            + H      +  G Y C AN       + S  L+V 
Sbjct: 65  FILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 44.7 bits (104), Expect = 3e-07
 Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 7/94 (7%)

Query: 96  PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRK-----NNNLPGGEYSYSGNS 150
            P +       +V  ++     LEC  +GN        +K     N             S
Sbjct: 2   YPVL--KDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 59

Query: 151 LTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184
           L          G Y C A    G +++  I+   
Sbjct: 60  LVFLRPQASDEGHYQCFAETPAGVASSRVISFRK 93

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 3e-07
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGN--SLTVRHTNRHSAGIYL 165
             VK+  SVTL C ++             +       + S N   L +    R  AG Y 
Sbjct: 13  TTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQ 72

Query: 166 CVANNMVGSSAAASIALHVL 185
           C  +N V    + SI L ++
Sbjct: 73  CEISNPVSVRRSNSIKLDII 92

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 4e-07
 Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 8/89 (8%)

Query: 92  EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSY----- 146
           +++              +V KG+ + L  +   +    + W +    +      Y     
Sbjct: 1   DEKKSTAFQ-KKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESI 58

Query: 147 -SGNSLTVRHTNRHSAGIYLCVANNMVGS 174
            +  +LT+   +      Y CV      S
Sbjct: 59  GAKRTLTISQCSLADDAAYQCVVGGEKCS 87

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 6e-07
 Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 19/94 (20%)

Query: 107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG---------------EYSYSGNSL 151
           ++      +VT    +   P+  + W ++ + +                         SL
Sbjct: 4   QIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 152 TVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185
           T+ +        Y   + N+  +       L+VL
Sbjct: 63  TIYNLTSSDEDEYEMESPNITDT---MKFFLYVL 93

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (102), Expect = 6e-07
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 107 KVEVKKGYSVTLECKAD-GNPVPNITWTRKNNNLPGGEYSY--------SGNSLTVRHTN 157
           + E+  G S    C+        +I+W   N                    ++LT+ + N
Sbjct: 9   QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNAN 68

Query: 158 RHSAGIYLCVANNMVGSSAAASIALHV 184
              AGIY CV     G+ + A++ + +
Sbjct: 69  IDDAGIYKCVVTAEDGTQSEATVNVKI 95

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 1e-06
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 97  PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHT 156
           P+ +         V +  SVTL+C+   +P  N T    N +L   + S       +   
Sbjct: 4   PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSY----FIDAA 59

Query: 157 NRHSAGIYLCVANNMVGSSAA 177
             + +G Y C  N    S   
Sbjct: 60  TVNDSGEYRCQTNLSTLSDPV 80

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 2e-06
 Identities = 17/99 (17%), Positives = 25/99 (25%), Gaps = 19/99 (19%)

Query: 97  PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-------------- 142
           P I+  +    +EV  G  + L C   G       W    + +                 
Sbjct: 2   PVIVSPA-NETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60

Query: 143 ---EYSYSGNSLTVRHTNR-HSAGIYLCVANNMVGSSAA 177
                S     L +           + C A N  G  AA
Sbjct: 61  ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAA 99

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-06
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 95  IPPRIIYVSGAGKVEVKKGYSVTLECK-ADGNPVPNITWTRKNNNLPGGEYSYSGNSLTV 153
           + P  +       V V  G S  L C+ A  +   ++ W   + +L   +     + LTV
Sbjct: 1   VKPLQVEPP-EPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTV 59

Query: 154 RHTNRHSAGIYLCVANNMVGSSAAASIALHV 184
           R+ +  +AG  +CV +     +   ++ L V
Sbjct: 60  RNASLSAAGTRVCVGSCGGR-TFQHTVQLLV 89

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 3e-06
 Identities = 14/87 (16%), Positives = 21/87 (24%), Gaps = 7/87 (8%)

Query: 96  PPRIIYVSGAGKVEVKKGYSVTLECKADG-NPVPNITWTRKNNNLPGGEYSYSGNS---- 150
           P R+             G  +TL C+ +G  P   +T                G      
Sbjct: 4   PERVE--LAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVT 61

Query: 151 LTVRHTNRHSAGIYLCVANNMVGSSAA 177
            TV     H    + C     +     
Sbjct: 62  TTVLVRRDHHGAQFSCRTELDLRPQGL 88

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 4e-06
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCV 167
           + V       L C+A G P P      +     GG    + +   +  T    + ++ C 
Sbjct: 11  LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP---APSPSVLNVTGVTQSTMFSCE 67

Query: 168 ANNMVGSSAAASIALHV 184
           A+N+ G +++ +  +H+
Sbjct: 68  AHNLKGLASSRTATVHL 84

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 4e-06
 Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 6/72 (8%)

Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-----EYSYSGNSLTVRHTNRHSAG 162
           VEV  G +   E +    P  +  W  K   L              + L + +      G
Sbjct: 11  VEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTG 69

Query: 163 IYLCVANNMVGS 174
                A N   +
Sbjct: 70  EVSFQAANAKSA 81

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 4e-06
 Identities = 10/77 (12%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 109 EVKKGYSVTLECKADGN-PVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCV 167
             K+   + L C +  N  +  +T+ +   N    +Y +  +   +       +G Y C 
Sbjct: 13  VFKEEDPIHLRCHSWKNTALHKVTYLQ---NGKDRKYFHHNSDFHIPKATLKDSGSYFCR 69

Query: 168 ANNMVGSSAAASIALHV 184
                 + ++ ++ + +
Sbjct: 70  GLVGSKNVSSETVNITI 86

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 4e-06
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 110 VKKGYSVTLECKADGN-PVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVA 168
           V +G  + L C    N  V  + + +    L    Y Y  +++++ +     +G Y C  
Sbjct: 12  VMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK---YWYENHNISITNATVEDSGTYYCTG 68

Query: 169 NNMVGSSAAASIALHVL 185
                   +  + + V+
Sbjct: 69  KVWQLDYESEPLNITVI 85

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 5e-06
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYS--GNSLTVRHTNRHSAGIYLCV 167
            K G +  L+C    N        +                 +L + + +   +G+Y C+
Sbjct: 9   FKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCL 68

Query: 168 ANNMVGS-SAAASIALHVL 185
           +   V + +    +A HVL
Sbjct: 69  SEERVKNKTVFQVVAKHVL 87

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.8 bits (94), Expect = 8e-06
 Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 6/83 (7%)

Query: 108 VEVKKGYSVTLECKA-DGNPVPNITWTRKNNNLPGGE-----YSYSGNSLTVRHTNRHSA 161
           V++ +G+ V   C      P  +  W                 S +  +L +  T     
Sbjct: 14  VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDL 73

Query: 162 GIYLCVANNMVGSSAAASIALHV 184
           G Y C A + +     +  +   
Sbjct: 74  GNYSCFATSHIDFITKSVFSKFS 96

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 1e-05
 Identities = 16/105 (15%), Positives = 27/105 (25%), Gaps = 18/105 (17%)

Query: 97  PRIIYVSGAGKVEVKKGYSVTLECKADGNPV---PNITWTRKNNNLP------------- 140
           P  ++V      EV  G S+T   +  G  +   P + W +                   
Sbjct: 3   PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62

Query: 141 -GGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184
                      L +        G Y C  +        ++  L V
Sbjct: 63  YDRASKVYLFELHITDAQPAFTGGYRCEVSTKDK-FDCSNFNLTV 106

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 2e-05
 Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 7/90 (7%)

Query: 96  PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRH 155
           PP+ +       + V +  SVTL C+   +P  +      N NL       S        
Sbjct: 2   PPKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPS----YRFK 57

Query: 156 TNRHSAGIYLCVANNMVGSSAAASIALHVL 185
            N + +G Y C       S     + L VL
Sbjct: 58  ANNNDSGEYTCQTGQTSLSD---PVHLTVL 84

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 2e-05
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 100 IYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNLPGGEYSYSGNSLTVRHTN 157
           I  +   +   + G SV+L C   G   P  +W  +             + ++LT+   +
Sbjct: 3   IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVS 62

Query: 158 RHSAGIYLCVANNMVGSSAAASIALHV 184
             +   YLC A           I + +
Sbjct: 63  FGNEHSYLCTATCESR-KLEKGIQVEI 88

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 2e-05
 Identities = 21/104 (20%), Positives = 29/104 (27%), Gaps = 17/104 (16%)

Query: 94  RIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNL------------PG 141
             PP I   S         G    ++C     P P+        N+              
Sbjct: 5   NGPPII---SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETI 61

Query: 142 GEYSYSGNSLTVRHTNR-HSAGIYLCVANNMVGSSAAASIALHV 184
                  ++LT+ +  R     IY C A N  G S    I L  
Sbjct: 62  STEEGVISTLTISNIVRADFQTIYNCTAWNSFG-SDTEIIRLKE 104

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 4e-05
 Identities = 16/103 (15%), Positives = 26/103 (25%), Gaps = 18/103 (17%)

Query: 99  IIYVSGAGKVEVKKGYSVTLECKADGNPV---PNITWTRKNNNLPG-------------- 141
           I+++       VK G  +T   K     +   P I W +                     
Sbjct: 1   ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 60

Query: 142 GEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184
                    + +     + AG Y C          + S  L V
Sbjct: 61  RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDK-FDSCSFDLEV 102

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 1e-04
 Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 5/81 (6%)

Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG---GEYSYSGNSLTVRHTNR-HSAGI 163
             V  G  V L C+ +G  +    W                     LT+ +     +   
Sbjct: 12  ASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKN 71

Query: 164 YLCVANNMVGSSAAASIALHV 184
             C A N VG  A  S+ ++V
Sbjct: 72  VTCWAENDVG-RAEVSVQVNV 91

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (82), Expect = 5e-04
 Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 21/98 (21%)

Query: 108 VEVKKGYSVTLECKADGNPVPNITWTR----------------KNNNLPGGEYS-----Y 146
            +V +  +V L        +    W +                 N N  G  YS     Y
Sbjct: 9   PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY 68

Query: 147 SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184
           S  SL  +       G+Y     +       A++  HV
Sbjct: 69  SNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (81), Expect = 8e-04
 Identities = 11/105 (10%), Positives = 23/105 (21%), Gaps = 29/105 (27%)

Query: 108 VEVKKGYSVTLECKADGNP-VPNITWTRKNNNLPGGEYSYSGN----------------- 149
           +    G    L C+         +      +      + Y                    
Sbjct: 12  IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTEL 71

Query: 150 ----------SLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184
                     +L +++      G Y C   +       A++ L V
Sbjct: 72  LKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSY-QEEAAVELKV 115

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 15/88 (17%)

Query: 113 GYSVTLECK--ADGNPVPNITWTRKNNNL-----------PGGEYSYSGN-SLTVRHTNR 158
           G+ + L        + +  + W R +  +             G +    N  L +++  R
Sbjct: 10  GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 69

Query: 159 HSAGIYLCVANNMVGSSAA-ASIALHVL 185
             +G Y     +  G+     ++ L +L
Sbjct: 70  DDSGTYNVTVYSTNGTRILNKALDLRIL 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.8
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.75
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.75
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.74
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.74
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.71
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.71
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.71
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.7
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.69
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.69
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.68
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.67
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.67
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.67
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.66
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.66
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.65
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.65
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.63
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.62
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.62
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.62
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.61
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.61
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.59
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.59
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.58
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.58
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.58
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.57
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.57
d2avga1	110	Cardiac myosin binding protein C, different domain	99.57
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.57
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.57
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.56
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.54
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.53
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.53
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.53
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.52
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.52
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.51
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.51
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.5
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.49
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.48
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.46
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.44
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.44
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.41
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.41
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.4
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.38
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.34
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.31
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.29
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.19
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.08
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.98
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.94
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.84
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.81
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.77
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.73
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	98.7
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	98.68
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.68
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.61
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	98.61
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.61
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.53
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.52
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.51
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.51
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.5
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.48
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.47
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.46
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.46
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.45
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.45
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.43
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.43
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.42
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.42
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.41
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.39
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.39
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.39
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.38
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.36
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.35
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.34
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.32
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.31
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.31
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.29
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.28
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.27
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.26
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.26
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.26
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.26
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.24
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.24
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.24
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.24
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.23
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.23
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.21
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.19
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.18
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.18
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.18
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.18
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.17
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.17
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.16
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.15
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.15
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.15
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.14
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.13
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.13
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.13
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.13
d2avga1	110	Cardiac myosin binding protein C, different domain	98.13
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.11
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.11
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.09
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.09
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.08
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.08
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.08
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.08
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.07
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.07
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.07
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.06
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.06
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.05
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.05
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.05
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.04
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.04
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.04
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.03
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.03
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.03
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.03
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.02
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.02
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.02
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.02
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.01
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.99
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.97
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.97
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.96
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.96
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.96
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.95
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.95
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.95
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.94
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.94
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.93
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.93
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	97.93
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.92
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.91
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.9
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.89
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.88
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.87
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	97.87
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.87
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.86
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.86
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.86
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.85
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.84
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.82
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.81
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.81
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.8
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.8
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.79
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.79
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.78
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.77
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.76
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.73
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.71
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.71
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.7
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.7
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.7
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	97.68
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.68
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.68
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.66
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	97.65
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.65
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.65
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.63
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.63
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.62
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.59
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.59
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.58
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.58
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.54
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.54
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	97.52
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.48
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.47
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.45
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.44
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.41
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.4
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.39
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	97.37
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.37
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	97.36
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.35
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.32
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	97.3
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	97.22
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.21
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	97.21
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.13
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.08
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.06
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	97.04
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.01
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	97.0
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	96.96
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	96.95
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	96.95
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.94
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.84
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	96.84
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	96.83
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	96.83
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	96.83
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.78
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	96.74
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	96.73
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	96.72
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.71
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.69
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	96.68
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	96.66
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	96.65
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	96.62
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.54
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.5
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	96.48
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.46
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	96.45
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.45
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.45
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.44
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	96.43
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	96.43
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	96.43
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	96.42
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.4
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	96.38
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	96.37
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	96.33
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	96.33
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	96.32
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.3
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.3
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	96.28
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.25
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	96.24
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.21
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.21
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	96.16
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.16
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	96.16
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.15
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	96.11
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.11
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.08
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.08
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	96.07
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.04
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.02
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	96.0
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	96.0
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	95.98
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	95.97
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	95.97
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	95.96
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	95.95
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	95.95
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.93
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	95.91
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	95.9
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	95.89
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	95.88
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.86
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	95.85
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	95.82
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	95.8
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	95.77
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	95.75
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	95.73
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	95.66
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	95.66
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	95.61
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.59
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	95.53
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	95.52
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	95.49
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	95.43
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	95.4
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	95.39
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	95.32
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	95.28
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	95.26
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	95.17
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	95.17
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	95.14
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	95.08
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	95.06
d1xmwa2	66	CD3 epsilon chain ectodomain fragment {Sheep (Ovis	94.99
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	94.7
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	94.67
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	94.58
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	94.49
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	94.49
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	94.29
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	93.89
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	93.82
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	93.69
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	93.45
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	93.35
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	93.33
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	93.23
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	92.98
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	92.51
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	92.49
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	92.06
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	91.82
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	91.39
d2oz4a1	84	Intercellular cell adhesion molecule-1 (ICAM-1) {H	91.24
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	91.03
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	91.03
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	90.97
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	90.64
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	90.26
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	90.04
d1i1ra1	100	Cytokine receptor gp130 cytokine-binding domains {	89.77
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	89.74
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	89.67
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	89.28
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	89.28
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	88.79
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	88.56
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	87.94
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	87.9
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	87.18
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	87.07
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	86.74
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	86.14
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	85.93
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	85.14
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	84.86
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	84.38
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	81.47

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.80  E-value=3.2e-19  Score=103.06  Aligned_cols=79  Identities=29%  Similarity=0.552  Sum_probs=70.8

Q ss_pred             ceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++++..+...+.......|.|.++...|.|.|.|.|.|..|.. +..+.|.|+
T Consensus        11 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~   89 (89)
T d1biha4          11 KVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDK-YFETLVQVN   89 (89)
T ss_dssp             SEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             CCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccccEEEeeeeEEECCCChhhCEEEEEEEEECCCEE-EEEEEEEEC
Confidence            3456788999999999999999999999999999887777777889999999999999999999999988 578888774

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.75  E-value=1.2e-17  Score=96.28  Aligned_cols=82  Identities=29%  Similarity=0.487  Sum_probs=70.6

Q ss_pred             cCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA  181 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~  181 (187)
                      ..+....+..|+.+.|.|.+.|.|.|.+.|+++|..+.... .....+.|.|.++..+|.|.|.|.|.|..|.. +..+.
T Consensus         6 ~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~   84 (89)
T d1cs6a4           6 DVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTV-YASAE   84 (89)
T ss_dssp             ECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEE-EEEEE
T ss_pred             EECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCEE-EEEEE
Confidence            34556778999999999999999999999999999886553 44567899999999999999999999999987 57888


Q ss_pred             EEEE
Q psy15738        182 LHVL  185 (187)
Q Consensus       182 l~v~  185 (187)
                      |.|.
T Consensus        85 l~V~   88 (89)
T d1cs6a4          85 LTVQ   88 (89)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8774

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.9e-18  Score=102.01  Aligned_cols=91  Identities=33%  Similarity=0.625  Sum_probs=71.4

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-----EEE--eCcEEEEecCCCCCCeEEEEEE
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-----YSY--SGNSLTVRHTNRHSAGIYLCVA  168 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-----~~~--~~~~l~i~~~~~~d~g~y~C~~  168 (187)
                      ||.+..........+..|+.+.|.|.+.|.|.|.+.|++++..+....     ...  ..+.|.|.++..+|.|.|.|.|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA   82 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEE
Confidence            555543222223455679999999999999999999999998875432     111  2468999999999999999999


Q ss_pred             ecCCCCcceeeEEEEEEeC
Q psy15738        169 NNMVGSSAAASIALHVLCK  187 (187)
Q Consensus       169 ~n~~g~~~s~~~~l~v~~~  187 (187)
                      .|..|.. +..+.|.|+.|
T Consensus        83 ~N~~G~~-~~~~~l~V~~K  100 (100)
T d1qz1a3          83 ENKAGEQ-DASIHLKVFAK  100 (100)
T ss_dssp             EETTEEE-EEEEEEEEECC
T ss_pred             EECCCEE-EEEEEEEEEEC
Confidence            9999988 68999999876

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.74  E-value=5.9e-18  Score=98.11  Aligned_cols=88  Identities=27%  Similarity=0.425  Sum_probs=70.4

Q ss_pred             cCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738         95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus        95 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      ++|.+. ...+....+.+|+.+.|.|.+.|.|.|.+.|++++...... .....+.|.|.++..+|.|.|.|.|.|..|.
T Consensus         3 ~~P~i~-~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   80 (91)
T d1cs6a3           3 YAPSIK-AKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK-WLSSEPLLHIQNVDFEDEGTYECEAENIKGR   80 (91)
T ss_dssp             EEEEEE-ECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC-CSBSSSEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             cCCeEE-eeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE-eeeeeeEEEeCCCCccCCEEEEEEEEECCCE
Confidence            355554 33455678899999999999999999999999977654322 2234578999999999999999999999998


Q ss_pred             cceeeEEEEEE
Q psy15738        175 SAAASIALHVL  185 (187)
Q Consensus       175 ~~s~~~~l~v~  185 (187)
                      . +..+.|.|+
T Consensus        81 ~-~~~~~l~V~   90 (91)
T d1cs6a3          81 D-TYQGRIIIH   90 (91)
T ss_dssp             E-EEEEEEEEE
T ss_pred             E-EEEEEEEEE
Confidence            7 578888875

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=3.8e-17  Score=94.27  Aligned_cols=82  Identities=29%  Similarity=0.476  Sum_probs=70.0

Q ss_pred             ecCCceEEEecCCcEEEEeEec-cCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeE
Q psy15738        102 VSGAGKVEVKKGYSVTLECKAD-GNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASI  180 (187)
Q Consensus       102 ~~~~~~~~~~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~  180 (187)
                      ...+....+.+|+.+.|.|.+. +.|.|.+.|++++..+.........+.|.|.++...|+|.|.|.|.|..|.. +..+
T Consensus         6 ~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~   84 (89)
T d1gl4b_           6 VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMD-QGTA   84 (89)
T ss_dssp             ECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCEE-EEEE
T ss_pred             EcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEeeceEEEEecCCcccCEEEEEEEEECCCEE-EEEE
Confidence            3345567788999999999997 5678899999999887777666677899999999999999999999999987 5777


Q ss_pred             EEEE
Q psy15738        181 ALHV  184 (187)
Q Consensus       181 ~l~v  184 (187)
                      +|.|
T Consensus        85 ~l~V   88 (89)
T d1gl4b_          85 TLHV   88 (89)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7776

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.71  E-value=3.8e-17  Score=95.96  Aligned_cols=89  Identities=18%  Similarity=0.353  Sum_probs=72.4

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-EE---eC--cEEEEecCCCCCCeEEEEEEe
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-SY---SG--NSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~---~~--~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      +|.+.  ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ..   ..  ..|.|.++...|.|.|.|.|.
T Consensus         4 aP~f~--~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   81 (98)
T d1g1ca_           4 APKIF--ERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   81 (98)
T ss_dssp             EEEEE--ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCeEe--cCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEE
Confidence            45553  334567889999999999999999999999999998865532 21   12  379999999999999999999


Q ss_pred             cCCCCcceeeEEEEEEeC
Q psy15738        170 NMVGSSAAASIALHVLCK  187 (187)
Q Consensus       170 n~~g~~~s~~~~l~v~~~  187 (187)
                      |..|.. +..+.|.|.-|
T Consensus        82 N~~G~~-~~~~~L~V~~k   98 (98)
T d1g1ca_          82 NIAGET-SSHAFLLVQAK   98 (98)
T ss_dssp             ETTEEE-EEEEEEEEECC
T ss_pred             ECCcEE-EEEEEEEEEEC
Confidence            999988 68899988754

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=9.2e-17  Score=93.00  Aligned_cols=81  Identities=22%  Similarity=0.381  Sum_probs=68.2

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE---E----eCcEEEEecCCCCCCeEEEEEEecCCCCcce
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS---Y----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAA  177 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~---~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s  177 (187)
                      |....+.+|+.+.|.|.+.|.|.|.+.|++++..+......   .    ....|.|.++...|.|.|.|.|.|..|...|
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence            45678899999999999999999999999999988655322   1    1246899999999999999999999998667


Q ss_pred             eeEEEEEE
Q psy15738        178 ASIALHVL  185 (187)
Q Consensus       178 ~~~~l~v~  185 (187)
                      ..+.|.|.
T Consensus        83 ~~~~l~V~   90 (91)
T d1rhfa1          83 QPVWLTVE   90 (91)
T ss_dssp             CCEEEEEE
T ss_pred             EEEEEEEE
Confidence            88888885

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.1e-16  Score=91.32  Aligned_cols=77  Identities=22%  Similarity=0.451  Sum_probs=63.6

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCC-cEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVP-NITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL  182 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l  182 (187)
                      .+....+.+|+.+.|.|.+.|.|.| .+.|+++|..+....    .+.+.|......|+|.|.|.|.|..|...|+.++|
T Consensus         7 ~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~----~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v   82 (85)
T d1rhfa2           7 EPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA----PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATV   82 (85)
T ss_dssp             CCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE----ESSEEEEECCCSSCEEEEEEEEETTEEEECCCEEE
T ss_pred             eCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC----CcceEEecCCccccEEEEEEEEcCCCcEEEEEEEE
Confidence            3556778999999999999999988 899999998876542    24456677777899999999999999776778887


Q ss_pred             EE
Q psy15738        183 HV  184 (187)
Q Consensus       183 ~v  184 (187)
                      .|
T Consensus        83 ~V   84 (85)
T d1rhfa2          83 HL   84 (85)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.70  E-value=7.1e-17  Score=95.47  Aligned_cols=87  Identities=24%  Similarity=0.473  Sum_probs=71.0

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE--e---CcEEEEecCCCCCCeEEEEEEe
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY--S---GNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~--~---~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      +|.+.  ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.... +..  .   ...|.|.++...|.|.|.|.|.
T Consensus         8 ~P~f~--~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   85 (102)
T d1fhga_           8 KPYFT--KTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV   85 (102)
T ss_dssp             EEEEE--ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCeEE--cCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEE
Confidence            45553  34556778999999999999999999999999999886553 221  1   2469999999999999999999


Q ss_pred             cCCCCcceeeEEEEEE
Q psy15738        170 NMVGSSAAASIALHVL  185 (187)
Q Consensus       170 n~~g~~~s~~~~l~v~  185 (187)
                      |..|.. +.++.|.|.
T Consensus        86 N~~G~~-~~~~~L~V~  100 (102)
T d1fhga_          86 NSLGEA-TCTAELLVE  100 (102)
T ss_dssp             ETTEEE-EEEEEEEEE
T ss_pred             ECCcEE-EEEEEEEEE
Confidence            999988 578888875

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.3e-16  Score=93.06  Aligned_cols=82  Identities=26%  Similarity=0.367  Sum_probs=68.9

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE----eCcEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAA  178 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~  178 (187)
                      .+....+..|+.+.|.|.+.|.|.|.+.|++++..+.... ...    ....|.|.++..+|+|.|.|.|.|..|.. +.
T Consensus         6 ~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~   84 (101)
T d2cqva1           6 FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSR-QA   84 (101)
T ss_dssp             CCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEE-EC
T ss_pred             eCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEE-EE
Confidence            3456778999999999999999999999999999885543 222    12469999999999999999999999988 68


Q ss_pred             eEEEEEEe
Q psy15738        179 SIALHVLC  186 (187)
Q Consensus       179 ~~~l~v~~  186 (187)
                      .+.|.|..
T Consensus        85 ~~~l~V~~   92 (101)
T d2cqva1          85 QVNLTVVD   92 (101)
T ss_dssp             CEEEEEEC
T ss_pred             EEEEEEEe
Confidence            88888864

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.6e-18  Score=96.30  Aligned_cols=82  Identities=23%  Similarity=0.315  Sum_probs=65.5

Q ss_pred             CeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcc
Q psy15738         97 PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSA  176 (187)
Q Consensus        97 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  176 (187)
                      |++.....+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...        +.+.+++..|+|.|.|.|.|..|.. 
T Consensus         3 P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~--------~~~~~v~~~d~G~Y~C~A~N~~G~~-   73 (84)
T d2oz4a3           3 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI--------GESVTVTRDLEGTYLCRARSTQGEV-   73 (84)
T ss_dssp             EECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT--------TSCEECCGGGCEEEEEEEEETTEEE-
T ss_pred             CceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee--------eeeeccccCCCCEEEEEEEcCCCEE-
Confidence            4443233355678899999999999999999999999998765432        1345788899999999999999988 


Q ss_pred             eeeEEEEEEeC
Q psy15738        177 AASIALHVLCK  187 (187)
Q Consensus       177 s~~~~l~v~~~  187 (187)
                      +..+.|.|..+
T Consensus        74 ~~~~~l~V~~P   84 (84)
T d2oz4a3          74 TREVTVNVLSP   84 (84)
T ss_dssp             EEEEEEEEECC
T ss_pred             EEEEEEEEECC
Confidence            68999998764

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.68  E-value=4.7e-17  Score=94.63  Aligned_cols=86  Identities=26%  Similarity=0.416  Sum_probs=69.2

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EE--E--eCcEEEEecCCCCCCeEEEEEEec
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YS--Y--SGNSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~--~--~~~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      +|.+.  ..+....+..|+.+.|.|.+.|.|.|.+.|++++..+.... ..  .  ....|.|.++...|+|.|.|.|.|
T Consensus         2 ~P~i~--~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   79 (93)
T d1wiua_           2 KPKIL--TASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CCEEC--CCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             CCeEE--eCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEE
Confidence            45553  34556789999999999999999999999999998765432 11  1  235799999999999999999999


Q ss_pred             CCCCcceeeEEEEE
Q psy15738        171 MVGSSAAASIALHV  184 (187)
Q Consensus       171 ~~g~~~s~~~~l~v  184 (187)
                      ..|.. +..+.|.|
T Consensus        80 ~~G~~-~~~~~l~V   92 (93)
T d1wiua_          80 ELGED-EAIFEVIV   92 (93)
T ss_dssp             TTEEE-EEEEEEEE
T ss_pred             CCCEE-EEEEEEEE
Confidence            99988 57777766

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3e-16  Score=90.37  Aligned_cols=79  Identities=23%  Similarity=0.320  Sum_probs=64.9

Q ss_pred             ceEEEecCCcEEEEeEec-cCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        106 GKVEVKKGYSVTLECKAD-GNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      ....+..|+++.|.|.+. |.|.|.+.|++.+.++.........+.|.|.+++.+|+|.|.|.|.|..|.. +.++.|.|
T Consensus        11 ~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~-~~s~~l~V   89 (90)
T d1gsma1          11 PVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTF-QHTVQLLV   89 (90)
T ss_dssp             SEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             CeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeeeeeccCceeeEEcCccChhhCCcEEEEEEeCCCcE-EEEEEEEE
Confidence            346778999999999885 7889999999988766433322345789999999999999999999999987 68888887


Q ss_pred             E
Q psy15738        185 L  185 (187)
Q Consensus       185 ~  185 (187)
                      +
T Consensus        90 y   90 (90)
T d1gsma1          90 Y   90 (90)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.67  E-value=2.5e-16  Score=92.19  Aligned_cols=80  Identities=24%  Similarity=0.421  Sum_probs=66.6

Q ss_pred             ceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc---EEE----eCcEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738        106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---YSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAA  178 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~---~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~  178 (187)
                      ....+..|+++.|.|.+.|.|.|.+.|++++..+....   ...    ....|.|.++..+|+|.|.|.|.|..|...+.
T Consensus        11 ~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   90 (97)
T d1biha3          11 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH   90 (97)
T ss_dssp             CSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEE
T ss_pred             CCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEE
Confidence            35678899999999999999999999999999875331   111    23589999999999999999999999987667


Q ss_pred             eEEEEEE
Q psy15738        179 SIALHVL  185 (187)
Q Consensus       179 ~~~l~v~  185 (187)
                      .+.|.|.
T Consensus        91 s~~L~Vl   97 (97)
T d1biha3          91 SLKLTVV   97 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            8888874

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.67  E-value=8.1e-17  Score=94.34  Aligned_cols=86  Identities=24%  Similarity=0.389  Sum_probs=69.2

Q ss_pred             CeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-EE----eCcEEEEecCCCCCCeEEEEEEecC
Q psy15738         97 PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-SY----SGNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus        97 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~----~~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      |++.  ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ..    ....|.|.++...|.|.|.|.|.|.
T Consensus         2 P~f~--~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   79 (97)
T d1koaa1           2 PRFI--VKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNS   79 (97)
T ss_dssp             CEEE--ECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEET
T ss_pred             CEEE--EeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEEC
Confidence            4553  335556789999999999999999999999999998755422 11    1236999999999999999999999


Q ss_pred             CCCcceeeEEEEEE
Q psy15738        172 VGSSAAASIALHVL  185 (187)
Q Consensus       172 ~g~~~s~~~~l~v~  185 (187)
                      .|.. +..+.|.|.
T Consensus        80 ~G~~-~~~~~l~V~   92 (97)
T d1koaa1          80 YGTK-EEIVFLNVT   92 (97)
T ss_dssp             TEEE-EEEECCEEE
T ss_pred             CCEE-EEEEEEEEe
Confidence            9987 578888774

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.66  E-value=4.3e-17  Score=94.40  Aligned_cols=80  Identities=26%  Similarity=0.487  Sum_probs=66.9

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-E--E--eCcEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-S--Y--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAA  178 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~--~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~  178 (187)
                      .|....+.+|+.+.|.|.+.|.|.|.+.|++++..+..... .  .  ....|.|.++...|+|.|.|.|.|..|.. +.
T Consensus         5 ~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~   83 (91)
T d1tnna_           5 KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ-EA   83 (91)
T ss_dssp             CCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBC-CE
T ss_pred             CCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEE-EE
Confidence            35567889999999999999999999999999988755432 1  1  24679999999999999999999999988 57


Q ss_pred             eEEEEE
Q psy15738        179 SIALHV  184 (187)
Q Consensus       179 ~~~l~v  184 (187)
                      .+.|.|
T Consensus        84 ~~~l~V   89 (91)
T d1tnna_          84 EFTLTI   89 (91)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            777776

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.9e-16  Score=89.01  Aligned_cols=77  Identities=21%  Similarity=0.359  Sum_probs=64.8

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      ..+..|+.+.|.|.+.|.|.|.+.|++++..........  ..+.|.|.++..+|.|.|.|.|.|..|.. +..+.|.|+
T Consensus        11 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~-~~~~~v~V~   89 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKL-EKGIQVEIY   89 (90)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEE-EEEEEEEEE
Confidence            456789999999999999999999999887655443322  34679999999999999999999999988 688888875

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.65  E-value=2e-16  Score=92.58  Aligned_cols=78  Identities=27%  Similarity=0.492  Sum_probs=65.5

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc----EE--EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeE
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE----YS--YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASI  180 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~----~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~  180 (187)
                      ...+..|+.+.|.|.+.|.|.|.+.|+++|..+....    ..  .....|.|.++..+|+|.|.|.|.|..|.. +..+
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~   92 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTY   92 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEE-EEEE
Confidence            3467889999999999999999999999999875432    11  134689999999999999999999999987 6888


Q ss_pred             EEEEE
Q psy15738        181 ALHVL  185 (187)
Q Consensus       181 ~l~v~  185 (187)
                      .|.|+
T Consensus        93 ~l~Vl   97 (97)
T d3dara1          93 HLDVV   97 (97)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88874

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=4.4e-16  Score=90.21  Aligned_cols=83  Identities=19%  Similarity=0.370  Sum_probs=66.4

Q ss_pred             cCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC---cEE-EeCcEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG---EYS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAA  178 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~---~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~  178 (187)
                      ..|....+.+|+.+.|.|.+.|.|.|.+.|++++..+...   ... ...+.|.|.++...|+|.|.|.|.|..+.. ..
T Consensus         6 ~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~-~~   84 (92)
T d1epfa2           6 NAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE-IN   84 (92)
T ss_dssp             ECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTE-EE
T ss_pred             EcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCE-EE
Confidence            3455678899999999999999999999999999876433   122 234689999999999999999999987766 46


Q ss_pred             eEEEEEEe
Q psy15738        179 SIALHVLC  186 (187)
Q Consensus       179 ~~~l~v~~  186 (187)
                      ...+.|.+
T Consensus        85 ~~~i~ViV   92 (92)
T d1epfa2          85 FKDIQVIV   92 (92)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEC
Confidence            66666653

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.63  E-value=5.2e-16  Score=90.31  Aligned_cols=81  Identities=20%  Similarity=0.383  Sum_probs=65.7

Q ss_pred             cCCceEEEecCCcEEEEeEeccCCCC-cEEEEeCCeeCCCCc--EEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcce
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNPVP-NITWTRKNNNLPGGE--YSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAA  177 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~~--~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s  177 (187)
                      ..+....+.+|+.+.|.|.+.|.|.| .+.|+++|..+....  ...  ..++|.|.++..+|.|.|.|.|.|..|...+
T Consensus         7 ~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s   86 (94)
T d1biha1           7 DQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASS   86 (94)
T ss_dssp             CCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             ecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCCCEEEE
Confidence            44556788999999999999999866 699999998875432  222  3468999999999999999999999998656


Q ss_pred             eeEEEE
Q psy15738        178 ASIALH  183 (187)
Q Consensus       178 ~~~~l~  183 (187)
                      ..+.|.
T Consensus        87 ~~v~l~   92 (94)
T d1biha1          87 RVISFR   92 (94)
T ss_dssp             CCEEEE
T ss_pred             EEEEEE
Confidence            666654

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=8.7e-16  Score=87.38  Aligned_cols=72  Identities=18%  Similarity=0.285  Sum_probs=62.2

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      ..+.+|+++.|.|.+.|.|+|.+.|++++...     ......|.|.++..+|+|.|.|.|.|..|.. +..+.|.|.
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~-----~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~-~~~~~v~V~   80 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN-----IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV-EFKIDIVVL   80 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCCEEEEECTTCCE-----EEESSEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEECEE
T ss_pred             eEEECCCeEEEEEEeEcCCchheEEEeecccc-----eeeeeeeeeeecccccccEEEEEEEeCCCEE-EEEEEEEEE
Confidence            35789999999999999999999999976532     3356789999999999999999999999988 578888875

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.62  E-value=1.4e-15  Score=90.92  Aligned_cols=81  Identities=26%  Similarity=0.352  Sum_probs=63.1

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-----c--EE-----------EeCcEEEEecCCCCCCeEEE
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-----E--YS-----------YSGNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-----~--~~-----------~~~~~l~i~~~~~~d~g~y~  165 (187)
                      .|....+..|+++.|.|.+.|.|.|.+.|++++......     .  ..           .....|.|.++...|.|.|.
T Consensus        11 ~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   90 (109)
T d2fdbp2          11 LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT   90 (109)
T ss_dssp             CSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEE
T ss_pred             CCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEE
Confidence            356678999999999999999999999999976432111     0  00           01257999999999999999


Q ss_pred             EEEecCCCCcceeeEEEEEE
Q psy15738        166 CVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       166 C~~~n~~g~~~s~~~~l~v~  185 (187)
                      |.|.|..|.. ..++.|.|+
T Consensus        91 C~a~N~~G~~-~~~~~L~Vl  109 (109)
T d2fdbp2          91 CLAGNSIGIS-FHSAWLTVL  109 (109)
T ss_dssp             EEEECSSCEE-EEEEEEEEC
T ss_pred             EEEEECCCEE-EEEEEEEEC
Confidence            9999999988 588888874

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.62  E-value=4.7e-16  Score=89.23  Aligned_cols=77  Identities=17%  Similarity=0.338  Sum_probs=62.8

Q ss_pred             EEEecCCcEEEEeEeccC-CCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        108 VEVKKGYSVTLECKADGN-PVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~-p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      ..+.+|+.+.|.|.+.+. |.+.+.|++++..+...   ..+..|.|.+++.+|+|.|.|.|.|..|...|..+.|.|.+
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~---~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~~   86 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS---RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQA   86 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE---SSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEECC
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc---ccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEeC
Confidence            357899999999999755 56689999999765321   13468999999999999999999999987657888998876


Q ss_pred             C
Q psy15738        187 K  187 (187)
Q Consensus       187 ~  187 (187)
                      +
T Consensus        87 P   87 (88)
T d2fcba2          87 P   87 (88)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.1e-16  Score=91.56  Aligned_cols=89  Identities=24%  Similarity=0.425  Sum_probs=66.9

Q ss_pred             EEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-E--E------eCcEEEEecCCCCCCe
Q psy15738         92 EKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-S--Y------SGNSLTVRHTNRHSAG  162 (187)
Q Consensus        92 ~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~--~------~~~~l~i~~~~~~d~g  162 (187)
                      +|++||++.....+     ..+....+.|.+.|.|.|.+.|++++..+..... .  .      ....|.|.++...|+|
T Consensus         1 tV~~PP~i~~~~~~-----~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   75 (105)
T d1wwca_           1 TVYYPPRVVSLEEP-----ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNG   75 (105)
T ss_dssp             CCCCCCCCCCCCCC-----CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCE
T ss_pred             CEEcCCeeEEeCCC-----EEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccce
Confidence            35678887432221     2344566888999999999999999998865432 1  1      1246999999999999


Q ss_pred             EEEEEEecCCCCcceeeEEEEEEe
Q psy15738        163 IYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       163 ~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      .|.|.|.|..|.. +.++.|.|..
T Consensus        76 ~Y~C~a~N~~G~~-~~~~~v~V~~   98 (105)
T d1wwca_          76 NYTLIAKNPLGTA-NQTINGHFLK   98 (105)
T ss_dssp             EEEEEEEETTEEE-EEEEEECCSC
T ss_pred             EEEEEEEcCCCEE-EEEEEEEEEe
Confidence            9999999999988 6888887653

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.4e-15  Score=88.80  Aligned_cols=79  Identities=29%  Similarity=0.406  Sum_probs=66.0

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-EE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-SY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      ..+.+|+++.|.|.+.+ +++.+.|++++..+..... ..  ..+.|.|.++..+|.|.|.|.|.|..|...+..+.|.|
T Consensus        13 ~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V   91 (96)
T d1l6za2          13 TTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI   91 (96)
T ss_dssp             SEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEE
T ss_pred             eEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEE
Confidence            46789999999999876 5679999999998865432 22  35689999999999999999999999988677899999


Q ss_pred             EeC
Q psy15738        185 LCK  187 (187)
Q Consensus       185 ~~~  187 (187)
                      +++
T Consensus        92 ~~~   94 (96)
T d1l6za2          92 IFD   94 (96)
T ss_dssp             CCS
T ss_pred             EcC
Confidence            764

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2e-15  Score=89.19  Aligned_cols=87  Identities=20%  Similarity=0.366  Sum_probs=66.8

Q ss_pred             EcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE-E---------eCcEEEEecCCCCCCeE
Q psy15738         94 RIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS-Y---------SGNSLTVRHTNRHSAGI  163 (187)
Q Consensus        94 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~-~---------~~~~l~i~~~~~~d~g~  163 (187)
                      ..||.+.....     ...+....+.|.+.|.|.|.+.|++++..+...... .         ....|.|.+++..|.|.
T Consensus         2 ~~pP~it~~~~-----~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   76 (103)
T d1wwbx_           2 HFAPTITFLES-----PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGD   76 (103)
T ss_dssp             CCCCCCCCCCC-----CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             ccCCeeEEcCC-----CccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCce
Confidence            46776632211     234667789999999999999999999988655321 1         12469999999999999


Q ss_pred             EEEEEecCCCCcceeeEEEEEEe
Q psy15738        164 YLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       164 y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      |.|.|.|..|.. +..+.|.|..
T Consensus        77 Y~C~a~N~~G~~-~~~~~v~V~~   98 (103)
T d1wwbx_          77 YTLIAKNEYGKD-EKQISAHFMG   98 (103)
T ss_dssp             EEEEEECSSCEE-EEEEEECCSC
T ss_pred             EEEEEeccCCEE-EEEEEEEEEe
Confidence            999999999998 6888887753

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-15  Score=93.98  Aligned_cols=90  Identities=20%  Similarity=0.409  Sum_probs=68.9

Q ss_pred             cCCeeEEe---cCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc----------------------------
Q psy15738         95 IPPRIIYV---SGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE----------------------------  143 (187)
Q Consensus        95 ~~p~~~~~---~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~----------------------------  143 (187)
                      .||.+...   ..+..+.+..|+.+.|.|.+.|.|.|.+.|++++..+....                            
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            56665321   23446788899999999999999999999999876432110                            


Q ss_pred             --EE--E--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        144 --YS--Y--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       144 --~~--~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                        ..  .  ....|.|.++..+|+|.|.|.|.|..|.. +..+.|.|+
T Consensus        83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~  129 (130)
T d1gxea_          83 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGED-QVNLTVKVI  129 (130)
T ss_dssp             SSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred             ceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEE-EEEEEEEEE
Confidence              00  0  12469999999999999999999999988 688888875

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.1e-15  Score=84.99  Aligned_cols=77  Identities=14%  Similarity=0.237  Sum_probs=64.0

Q ss_pred             EEEecCCcEEEEeEeccCC-CCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        108 VEVKKGYSVTLECKADGNP-VPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p-~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      ..+.+|+.+.|.|.+.+.+ +..+.|+++|..+....   ....|.|.+++.+|+|.|.|.|.|..+...|..+.|.|.+
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~---~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~   86 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY---ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIK   86 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC---CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc---ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEe
Confidence            4578999999999997764 45799999998775432   3478999999999999999999998887767889998875


Q ss_pred             C
Q psy15738        187 K  187 (187)
Q Consensus       187 ~  187 (187)
                      +
T Consensus        87 ~   87 (89)
T d1f2qa2          87 A   87 (89)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.58  E-value=1.3e-15  Score=89.04  Aligned_cols=86  Identities=27%  Similarity=0.482  Sum_probs=63.2

Q ss_pred             CCeeEEecCCceEEEecC---CcEEEEeEeccCCCCcEEEEeCCeeCCCC---cEEE-eCcEEEEecCCCCCCeEEEEEE
Q psy15738         96 PPRIIYVSGAGKVEVKKG---YSVTLECKADGNPVPNITWTRKNNNLPGG---EYSY-SGNSLTVRHTNRHSAGIYLCVA  168 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g---~~~~l~C~~~g~p~p~~~W~~~~~~~~~~---~~~~-~~~~l~i~~~~~~d~g~y~C~~  168 (187)
                      +|.+.  ..+....+.+|   +.+.|.|.+.|.|.|.+.|++++..+...   .... ....|.+..+..+|.|.|.|.|
T Consensus         4 ~P~f~--~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   81 (97)
T d1cs6a1           4 GPVFE--EQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVA   81 (97)
T ss_dssp             EEEEE--ECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEE
T ss_pred             CCEEE--EeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEE
Confidence            44443  23444455554   78999999999999999999999887433   2222 3345666678888999999999


Q ss_pred             ecCCCCcceeeEEEE
Q psy15738        169 NNMVGSSAAASIALH  183 (187)
Q Consensus       169 ~n~~g~~~s~~~~l~  183 (187)
                      .|..|...|..+.|.
T Consensus        82 ~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          82 TNARGTVVSREASLR   96 (97)
T ss_dssp             EETTEEEECCCEEEE
T ss_pred             EECCCEEEEEEEEEe
Confidence            999998766677764

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=4.6e-15  Score=86.69  Aligned_cols=79  Identities=25%  Similarity=0.495  Sum_probs=61.3

Q ss_pred             eEEEecCCcEEEEeEeccCCC-CcEEEEeC-CeeCCCC--cEEE-----eCcEEEEecCCCCCCeEEEEEEecCCCCcce
Q psy15738        107 KVEVKKGYSVTLECKADGNPV-PNITWTRK-NNNLPGG--EYSY-----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAA  177 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~-p~~~W~~~-~~~~~~~--~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s  177 (187)
                      ...+..|+++.|.|.+.|.|+ |.+.|+++ +..+...  +...     ....|.|.++..+|+|.|.|.|.|..|...+
T Consensus         9 ~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   88 (97)
T d1epfa1           9 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE   88 (97)
T ss_dssp             SEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEE
T ss_pred             CEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEE
Confidence            457789999999999999985 79999984 4443322  2221     1357999999999999999999999997655


Q ss_pred             eeEEEEEE
Q psy15738        178 ASIALHVL  185 (187)
Q Consensus       178 ~~~~l~v~  185 (187)
                      .++.|.|+
T Consensus        89 ~tv~l~V~   96 (97)
T d1epfa1          89 ATVNVKIF   96 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            67888775

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.57  E-value=2.7e-15  Score=86.16  Aligned_cols=75  Identities=11%  Similarity=0.226  Sum_probs=61.2

Q ss_pred             EEEecCCcEEEEeEeccC-CCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        108 VEVKKGYSVTLECKADGN-PVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~-p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      ..+.+|+.+.|.|.+.+. |.+.+.|+++|..+..   ......|.|.+++.+|+|.|.|.|.|..|...|..+.|+|.
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~---~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~   87 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY---FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT   87 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE---EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEcccccce---eccccccEECccceeccceEEEEEEeCCCCeEEeeEEEEEE
Confidence            357899999999998754 5568999999976532   22456899999999999999999999988766778888875

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.7e-14  Score=86.22  Aligned_cols=76  Identities=18%  Similarity=0.408  Sum_probs=59.2

Q ss_pred             EEecCCcEEEEeEec-cCCCCcEEEEeCCeeCCCCcEE-----------E--eCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        109 EVKKGYSVTLECKAD-GNPVPNITWTRKNNNLPGGEYS-----------Y--SGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~~-----------~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      .+..|+.+.|.|.+. |.|.+.+.|++++..+......           .  ....|.|.+++..|+|.|.|.|.|..|.
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   92 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT   92 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence            578899999999985 7899999999999866332110           1  2357999999999999999999999998


Q ss_pred             cc-eeeEEEEE
Q psy15738        175 SA-AASIALHV  184 (187)
Q Consensus       175 ~~-s~~~~l~v  184 (187)
                      .. +..+.|.|
T Consensus        93 ~~~s~~v~l~V  103 (110)
T d1f97a2          93 AMRSEAAHMDA  103 (110)
T ss_dssp             CEECCCEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            74 34566655

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.1e-14  Score=87.10  Aligned_cols=83  Identities=19%  Similarity=0.214  Sum_probs=65.3

Q ss_pred             ecCCceEEEecCCcEEEEeEeccCC---CCcEEEEeCCeeCC---CC-cEEE----------eCcEEEEecCCCCCCeEE
Q psy15738        102 VSGAGKVEVKKGYSVTLECKADGNP---VPNITWTRKNNNLP---GG-EYSY----------SGNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       102 ~~~~~~~~~~~g~~~~l~C~~~g~p---~p~~~W~~~~~~~~---~~-~~~~----------~~~~l~i~~~~~~d~g~y  164 (187)
                      ...+....+..|+++.|.|.+.|.|   .|.+.|++++....   .. ....          ....|.|.++...|+|.|
T Consensus         8 v~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   87 (110)
T d2avga1           8 VMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGY   87 (110)
T ss_dssp             EECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEE
T ss_pred             EECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEE
Confidence            4446667889999999999999998   57899999875321   11 1111          124699999999999999


Q ss_pred             EEEEecCCCCcceeeEEEEEE
Q psy15738        165 LCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       165 ~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      .|.|.|..|.. +..+.|.|.
T Consensus        88 ~C~a~N~~G~~-~~~~~L~V~  107 (110)
T d2avga1          88 RCEVSTKDKFD-CSNFNLTVH  107 (110)
T ss_dssp             EEEEEETTEEE-EEEEEEEEE
T ss_pred             EEEEEECCCeE-EEEEEEEEE
Confidence            99999999998 688898885

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.1e-15  Score=89.28  Aligned_cols=83  Identities=22%  Similarity=0.238  Sum_probs=64.4

Q ss_pred             cCCceEEEecCCcEEEEeEeccCC-CCcEEEEeCCeeCC---CC-cEE-Ee-----CcEEEEecCCCCCCeEEEEEEecC
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNP-VPNITWTRKNNNLP---GG-EYS-YS-----GNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p-~p~~~W~~~~~~~~---~~-~~~-~~-----~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      ..+....+..|+.+.|.|.+.|.| .|.+.|++++..+.   .. ... ..     ...|.|.++..+|.|.|.|.|.|.
T Consensus         8 ~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   87 (104)
T d2aw2a1           8 KRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ   87 (104)
T ss_dssp             CTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             ecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcC
Confidence            445567889999999999999998 58999999886542   11 111 11     135999999999999999999999


Q ss_pred             CCCcceeeEEEEEE
Q psy15738        172 VGSSAAASIALHVL  185 (187)
Q Consensus       172 ~g~~~s~~~~l~v~  185 (187)
                      .|...+.++.|.|.
T Consensus        88 ~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          88 SNLIESHSTTLYVT  101 (104)
T ss_dssp             TEEEECCCEEEEEE
T ss_pred             CCeEEEEEEEEEEE
Confidence            99865667888774

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.5e-16  Score=91.28  Aligned_cols=86  Identities=20%  Similarity=0.307  Sum_probs=66.0

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE---EeCcEEEEecCCCCCCe-EEEEEEecC
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS---YSGNSLTVRHTNRHSAG-IYLCVANNM  171 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g-~y~C~~~n~  171 (187)
                      .|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++++..+......   .....|.|.++..+|.| .|.|.|.|.
T Consensus         2 ~P~i~~~--~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~   79 (92)
T d2ifga1           2 VPTLKVQ--VPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAEND   79 (92)
T ss_dssp             CCEEEEE--CCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             CCEEEEe--CCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcC
Confidence            3555422  23456789999999999999999999999998765432111   12357999999999998 699999999


Q ss_pred             CCCcceeeEEEEE
Q psy15738        172 VGSSAAASIALHV  184 (187)
Q Consensus       172 ~g~~~s~~~~l~v  184 (187)
                      .|.. +.++.|.|
T Consensus        80 ~G~~-~~s~~l~V   91 (92)
T d2ifga1          80 VGRA-EVSVQVNV   91 (92)
T ss_dssp             TEEC-CEEECCCC
T ss_pred             CCEE-EEEEEEEE
Confidence            9988 57777765

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.3e-15  Score=86.47  Aligned_cols=86  Identities=23%  Similarity=0.458  Sum_probs=64.6

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCC-cEEEEeCCeeCC-------CCcEEE----eCcEEEEecCC-CCCCe
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP-NITWTRKNNNLP-------GGEYSY----SGNSLTVRHTN-RHSAG  162 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~-------~~~~~~----~~~~l~i~~~~-~~d~g  162 (187)
                      ||.+.  ..+....+.+|+.+.|.|.+.|.|+| .+.|++++....       ..++..    ....|.|.++. ..|+|
T Consensus         2 PP~i~--~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G   79 (101)
T d3b5ha1           2 PPRVK--AVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPG   79 (101)
T ss_dssp             SCCCE--ESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSE
T ss_pred             CceEE--EcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCE
Confidence            67664  33456778899999999999999987 699999764321       111211    12479999998 47999


Q ss_pred             EEEEEEecCCCCcceeeEEEEE
Q psy15738        163 IYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       163 ~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      .|.|.|.|..|.. +..+.|.|
T Consensus        80 ~Y~C~A~N~~G~~-~~~~~L~V  100 (101)
T d3b5ha1          80 QYRCNGTSSKGSD-QAIITLRV  100 (101)
T ss_dssp             EEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEEEEEEECCCEE-EEEEEEEE
Confidence            9999999999988 57777766

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.54  E-value=2.6e-14  Score=81.25  Aligned_cols=73  Identities=25%  Similarity=0.404  Sum_probs=59.7

Q ss_pred             CceEEEecCCcEEEEeEeccCCCC-cEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVP-NITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      +....+.+|+.+.|.|.+.+.|.+ .+.|+++|..+...     ...|.|.++..+|+|.|.|.+.|..+   |..+.|.
T Consensus        11 P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~-----~~~l~i~~v~~~dsG~Y~C~a~ns~~---S~~v~l~   82 (85)
T d2fcba1          11 PQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH-----TQPSYRFKANNNDSGEYTCQTGQTSL---SDPVHLT   82 (85)
T ss_dssp             SCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC-----CSSEEEEECCGGGCEEEEEECTTSBC---CCCEEEE
T ss_pred             CCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc-----ccceEEeeccccCCcEEEEECCCCcc---cccEEEE
Confidence            444578899999999999998876 58899999887543     36789999999999999999998654   4567777


Q ss_pred             EE
Q psy15738        184 VL  185 (187)
Q Consensus       184 v~  185 (187)
                      |.
T Consensus        83 V~   84 (85)
T d2fcba1          83 VL   84 (85)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.7e-14  Score=83.32  Aligned_cols=68  Identities=22%  Similarity=0.322  Sum_probs=56.4

Q ss_pred             CceEEEecCCcEEEEeEeccCCC-CcEEEEeCCeeCCCCcEE--EeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPV-PNITWTRKNNNLPGGEYS--YSGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~-p~~~W~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      +....+.+|+.+.|.|.+.|.|+ +.+.|++++..+......  ..+..|.|.++..+|+|.|.|.|.|..
T Consensus        13 ~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1          13 RGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             TTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSSC
T ss_pred             CCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCcc
Confidence            44677888999999999998775 589999999887655433  356789999999999999999998754

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.8e-14  Score=83.15  Aligned_cols=75  Identities=17%  Similarity=0.380  Sum_probs=59.6

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc--EE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE--YS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~--~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      ...+.+|+++.|.|.+.| |+|.+.|++++..+....  +. ...+.|.|.++..+|+|.|.|.|.|..|.. +....|.
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~-~~~~~l~   83 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNK-TVFQVVA   83 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSS-EEEEEEE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCE-EEEEEEE
Confidence            467889999999999998 678999999998775432  11 245689999999999999999999998876 3444443

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8e-14  Score=83.60  Aligned_cols=82  Identities=20%  Similarity=0.228  Sum_probs=64.3

Q ss_pred             cCCceEEEecCCcEEEEeEeccCC---CCcEEEEeCCeeC----CCCcEEE----------eCcEEEEecCCCCCCeEEE
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNP---VPNITWTRKNNNL----PGGEYSY----------SGNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p---~p~~~W~~~~~~~----~~~~~~~----------~~~~l~i~~~~~~d~g~y~  165 (187)
                      ..+....+..|+.+.|.|.+.|.|   .|.+.|++++...    .......          ....|.|.++...|+|.|.
T Consensus         5 ~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (113)
T d2dava1           5 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYR   84 (113)
T ss_dssp             SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEE
T ss_pred             ECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEE
Confidence            445567889999999999999998   5789999987432    1111110          1246999999999999999


Q ss_pred             EEEecCCCCcceeeEEEEEE
Q psy15738        166 CVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       166 C~~~n~~g~~~s~~~~l~v~  185 (187)
                      |.|.|..|.. +..+.|.|.
T Consensus        85 C~a~N~~G~~-~~~~~L~V~  103 (113)
T d2dava1          85 CEVTYKDKFD-SCSFDLEVH  103 (113)
T ss_dssp             EEEECSSCEE-EECCEEEEE
T ss_pred             EEEEeCCCEE-EEEEEEEEE
Confidence            9999999988 688888885

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=7.9e-14  Score=82.07  Aligned_cols=81  Identities=20%  Similarity=0.464  Sum_probs=62.3

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCC-------------CCcEEEeCcEEEEecCCCCCCeEEEEEEec
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLP-------------GGEYSYSGNSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~-------------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|++++....             ..+.....++|.|.++..+|.|.|.|.|.|
T Consensus         7 ~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n   86 (102)
T d1f97a1           7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSE   86 (102)
T ss_dssp             SCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEE
T ss_pred             cCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEE
Confidence            3445778999999999999999999999998654211             111223456899999999999999999999


Q ss_pred             CCCCcceeeEEEEEE
Q psy15738        171 MVGSSAAASIALHVL  185 (187)
Q Consensus       171 ~~g~~~s~~~~l~v~  185 (187)
                      ..|.. ...+.+.|.
T Consensus        87 ~~g~~-~~~~~v~v~  100 (102)
T d1f97a1          87 EGGQN-YGEVSIHLT  100 (102)
T ss_dssp             TTSSS-EEEEEEEEE
T ss_pred             CCCCE-EEEEEEEEE
Confidence            99987 356555554

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.3e-14  Score=85.95  Aligned_cols=79  Identities=18%  Similarity=0.457  Sum_probs=61.6

Q ss_pred             ceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCC-------------CcEEEeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG-------------GEYSYSGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~-------------~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      +...+.+|+++.|.|.+.|.|.|.+.|++++..+..             .+.....+.|.|.++..+|+|.|.|.|.|..
T Consensus        12 ~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   91 (105)
T d1nbqa1          12 PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEG   91 (105)
T ss_dssp             SBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETT
T ss_pred             CeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEECC
Confidence            345688999999999999999999999997653211             1112234689999999999999999999999


Q ss_pred             CCcceeeEEEEEE
Q psy15738        173 GSSAAASIALHVL  185 (187)
Q Consensus       173 g~~~s~~~~l~v~  185 (187)
                      |... ..+.|.|.
T Consensus        92 G~~~-~~~~v~v~  103 (105)
T d1nbqa1          92 GNSY-GEVKVKLI  103 (105)
T ss_dssp             SSCE-ECCEEECC
T ss_pred             CCEE-EEEEEEEE
Confidence            9984 66565543

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.8e-14  Score=82.53  Aligned_cols=86  Identities=26%  Similarity=0.296  Sum_probs=62.3

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEe--CCee-CCCCcEE-E----eCcEEEEecCCCCCCeEEEEE
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTR--KNNN-LPGGEYS-Y----SGNSLTVRHTNRHSAGIYLCV  167 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~--~~~~-~~~~~~~-~----~~~~l~i~~~~~~d~g~y~C~  167 (187)
                      +|.|.   ..+...+..|+++.|.|.+.|.|.|.+.|++  .+.. ....... .    ....|.|.++..+|.|.|.|.
T Consensus         2 ~P~f~---~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   78 (96)
T d2c9aa1           2 TPHFL---RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCM   78 (96)
T ss_dssp             SCEEC---CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEE
T ss_pred             cCeec---ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEE
Confidence            45563   2456789999999999999999988765432  2222 2211111 1    125799999999999999999


Q ss_pred             EecCCCCcceeeEEEEE
Q psy15738        168 ANNMVGSSAAASIALHV  184 (187)
Q Consensus       168 ~~n~~g~~~s~~~~l~v  184 (187)
                      |.|..|...+..+.|.|
T Consensus        79 a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          79 IRTEGGVGISNYAELVV   95 (96)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEeCCCeEEEEEEEEEE
Confidence            99999987666678876

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.2e-15  Score=87.99  Aligned_cols=75  Identities=25%  Similarity=0.410  Sum_probs=58.6

Q ss_pred             eEEEecCCcEEEEeEe-ccCCCCcEEEEeCCeeCCCCcEE------------EeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKA-DGNPVPNITWTRKNNNLPGGEYS------------YSGNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~~------------~~~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      ...+..|+.+.|.|.+ .|.|.|.+.|++++..+......            ...+.|.|.++...|.|.|.|.|.|..|
T Consensus        11 ~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   90 (104)
T d1nbqa2          11 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG   90 (104)
T ss_dssp             BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSS
T ss_pred             CCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCC
Confidence            3467889999999998 57899999999999876433110            1235789999999999999999999999


Q ss_pred             CcceeeEEE
Q psy15738        174 SSAAASIAL  182 (187)
Q Consensus       174 ~~~s~~~~l  182 (187)
                      ... .+..+
T Consensus        91 ~~~-~s~~v   98 (104)
T d1nbqa2          91 TPM-TSNAV   98 (104)
T ss_dssp             CCE-ECCCB
T ss_pred             ceE-EEEEE
Confidence            874 44333

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.6e-14  Score=84.34  Aligned_cols=78  Identities=21%  Similarity=0.288  Sum_probs=62.5

Q ss_pred             ceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc--EE-----E----------eCcEEEEecCCCCCCe-EEEEE
Q psy15738        106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE--YS-----Y----------SGNSLTVRHTNRHSAG-IYLCV  167 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~--~~-----~----------~~~~l~i~~~~~~d~g-~y~C~  167 (187)
                      ....+..|+.+.|.|.+.|.|.|.+.|+++|..+....  ..     .          ..+.|.|.+++.+|.| .|.|.
T Consensus        10 ~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~   89 (107)
T d1iray3          10 ETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCF   89 (107)
T ss_dssp             EEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEE
T ss_pred             CEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEE
Confidence            34567789999999999999999999999998764331  10     0          1247999999999999 59999


Q ss_pred             EecCCCCcceeeEEEEE
Q psy15738        168 ANNMVGSSAAASIALHV  184 (187)
Q Consensus       168 ~~n~~g~~~s~~~~l~v  184 (187)
                      |.|..|.. +..+.|..
T Consensus        90 A~N~~G~~-~~~i~L~~  105 (107)
T d1iray3          90 AKNTHGID-AAYIQLIY  105 (107)
T ss_dssp             EECSSCEE-EEEEEEEC
T ss_pred             EEeCCCeE-EEEEEEEC
Confidence            99999988 57777754

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.8e-13  Score=80.32  Aligned_cols=68  Identities=21%  Similarity=0.318  Sum_probs=58.0

Q ss_pred             EEEecCCcEEEEe------EeccCCCCcEEEEeCCeeCCCC--cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        108 VEVKKGYSVTLEC------KADGNPVPNITWTRKNNNLPGG--EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       108 ~~~~~g~~~~l~C------~~~g~p~p~~~W~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +.+..|....|.|      .+.+.|.|.+.|++++.++...  ......+.|.|.++..+|+|.|.|.|.|..|..
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~   84 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGK   84 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCCE
Confidence            5678899999999      5678999999999999988544  234466889999999999999999999988754

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.9e-14  Score=84.65  Aligned_cols=72  Identities=21%  Similarity=0.376  Sum_probs=57.2

Q ss_pred             CcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE---E---------eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738        114 YSVTLECKADGNPVPNITWTRKNNNLPGGEYS---Y---------SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA  181 (187)
Q Consensus       114 ~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~---~---------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~  181 (187)
                      ....+.|.+.|.|.|.+.|++++..+......   .         ....|.|.++...|+|.|.|.|.|..|.. +..+.
T Consensus        16 ~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~-~~~i~   94 (107)
T d1he7a_          16 HHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA-SASIM   94 (107)
T ss_dssp             CEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEE-EEEEE
T ss_pred             EEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEE-EEEEE
Confidence            33446678999999999999999988654321   1         12469999999999999999999999988 68888


Q ss_pred             EEEEe
Q psy15738        182 LHVLC  186 (187)
Q Consensus       182 l~v~~  186 (187)
                      |.|..
T Consensus        95 v~v~~   99 (107)
T d1he7a_          95 AAFMD   99 (107)
T ss_dssp             ECCCS
T ss_pred             EEEEc
Confidence            87754

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.46  E-value=1.5e-13  Score=77.85  Aligned_cols=72  Identities=22%  Similarity=0.341  Sum_probs=57.1

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCc-EEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPN-ITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH  183 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~  183 (187)
                      |....+.+|+.++|.|.+.|.|.+. +.|++++..+..     ....|.|.+++.+|+|.|.|.|.|...   |..+.|.
T Consensus        12 P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~~s~~---S~~v~L~   83 (84)
T d1fnla1          12 PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS-----QASSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLE   83 (84)
T ss_dssp             SCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES-----SCSEEEESSCCGGGCEEEEEECSSSCC---CCCEEEE
T ss_pred             CCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee-----cceeeEecCCcccCCEEEEEEccCCCc---cccEEEE
Confidence            3345788999999999999998875 567888866533     346899999999999999999987644   5567776


Q ss_pred             E
Q psy15738        184 V  184 (187)
Q Consensus       184 v  184 (187)
                      |
T Consensus        84 V   84 (84)
T d1fnla1          84 V   84 (84)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.4e-13  Score=78.09  Aligned_cols=78  Identities=21%  Similarity=0.318  Sum_probs=60.3

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc---EEE--e--CcEEEEecCCCCCCeEEEEEEecCCCCcc
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---YSY--S--GNSLTVRHTNRHSAGIYLCVANNMVGSSA  176 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~---~~~--~--~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  176 (187)
                      ......+..|+.+.|.|.+ +.|.|.+.|++++..+....   ...  .  ...|.|.++..+|+|.|.|.|.|.     
T Consensus         6 ~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~-----   79 (90)
T d1x44a1           6 QLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG-----   79 (90)
T ss_dssp             CCCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE-----
T ss_pred             CCCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc-----
Confidence            3456789999999999998 46888999999998774332   221  1  247999999999999999999773     


Q ss_pred             eeeEEEEEEeC
Q psy15738        177 AASIALHVLCK  187 (187)
Q Consensus       177 s~~~~l~v~~~  187 (187)
                      +.++.|.|..|
T Consensus        80 ~~~a~l~V~~k   90 (90)
T d1x44a1          80 QSSAKLSVDLK   90 (90)
T ss_dssp             EEEEEEEEECC
T ss_pred             eEEEEEEEEEC
Confidence            45677877654

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.8e-13  Score=78.80  Aligned_cols=79  Identities=15%  Similarity=0.199  Sum_probs=64.2

Q ss_pred             eEEEecCCcEEEEeEec-cCCCCcEEEEeCCeeCCC-----CcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeE
Q psy15738        107 KVEVKKGYSVTLECKAD-GNPVPNITWTRKNNNLPG-----GEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASI  180 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~-----~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~  180 (187)
                      .....+|+.+.|.|.+. +.|.+.+.|++++..+..     .+.....+.|.|.++...|+|.|.|.|.|..|.. ...+
T Consensus        11 ~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~   89 (101)
T d1iray1          11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCL-RIKI   89 (101)
T ss_dssp             CEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEE-EEEE
T ss_pred             EEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeE-EEEE
Confidence            45678899999999884 678899999999864421     1233456899999999999999999999999988 5788


Q ss_pred             EEEEEe
Q psy15738        181 ALHVLC  186 (187)
Q Consensus       181 ~l~v~~  186 (187)
                      .|.|.-
T Consensus        90 ~L~V~~   95 (101)
T d1iray1          90 SAKFVE   95 (101)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            888863

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.41  E-value=1.3e-13  Score=81.55  Aligned_cols=69  Identities=19%  Similarity=0.327  Sum_probs=57.0

Q ss_pred             eEEEecCCcEEEEeEe-ccCCCCcEEEEeCCeeCCC---CcEEE--eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        107 KVEVKKGYSVTLECKA-DGNPVPNITWTRKNNNLPG---GEYSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~---~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      ...+.+|+.+.|.|.+ .|.|.|.+.|++++..+..   .+...  ..+.|.|.++..+|.|.|.|.|.|..|..
T Consensus        13 ~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~   87 (105)
T d1cs6a2          13 PVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFI   87 (105)
T ss_dssp             CEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             CEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCE
Confidence            4678999999999997 7889999999999876532   22222  35689999999999999999999998876

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.3e-13  Score=75.53  Aligned_cols=71  Identities=20%  Similarity=0.312  Sum_probs=54.7

Q ss_pred             eEEEecCCcEEEEeEeccCCCCc-EEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPN-ITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      ...+.+|+.+.|.|.+.+.|.+. +.|++++..+...     ...|.|.+++.+|+|.|.|.|.|..+   +..+.|.|.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~v~~~d~G~Y~C~a~~s~~---S~~v~l~V~   81 (82)
T d1f2qa1          10 WNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-----NSSLNIVNAKFEDSGEYKCQHQQVNE---SEPVYLEVF   81 (82)
T ss_dssp             CSEEETTCCEEEECCTTCC----CCEEEETTEECSCC-----SSEEEECSCCGGGCEEEEEECTTSSC---CCCEEEEEE
T ss_pred             CeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc-----cceeEECCCChhhCCcEEEEecCCCC---cccEEEEEE
Confidence            35688999999999999998874 6678888776543     46799999999999999999988644   556777774

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.9e-13  Score=77.01  Aligned_cols=72  Identities=19%  Similarity=0.397  Sum_probs=55.5

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-c-EEE--e--CcEEEEecCCCCCCeEEEEEEecCCCCcceeeE
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-E-YSY--S--GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASI  180 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~-~~~--~--~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~  180 (187)
                      ...+.+|+.+.|.|.+. .|+|.+.|+++|..+... . ...  .  ...|.|.++...|+|.|.|.|.|.     +.++
T Consensus        15 ~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~-----~~s~   88 (94)
T d1pd6a_          15 AYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE-----KCST   88 (94)
T ss_dssp             EEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE-----EECC
T ss_pred             CEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeE-----EEEE
Confidence            45688999999999984 588999999999987543 2 221  2  246999999999999999999774     3455


Q ss_pred             EEEE
Q psy15738        181 ALHV  184 (187)
Q Consensus       181 ~l~v  184 (187)
                      .|.|
T Consensus        89 ~l~V   92 (94)
T d1pd6a_          89 ELFV   92 (94)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5655

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.5e-15  Score=89.08  Aligned_cols=91  Identities=27%  Similarity=0.394  Sum_probs=68.9

Q ss_pred             EEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCC-CCcEEEEeCCeeCCCCc---EEE----e----CcEEEEecCCC
Q psy15738         91 KEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNP-VPNITWTRKNNNLPGGE---YSY----S----GNSLTVRHTNR  158 (187)
Q Consensus        91 l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p-~p~~~W~~~~~~~~~~~---~~~----~----~~~l~i~~~~~  158 (187)
                      |+|..||.+...   ....+.+|+.+.|.|.+.|.| ++.+.|++++..+....   +..    .    ...|.|.++..
T Consensus         2 L~V~~Pp~i~~~---~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~   78 (115)
T d2crya1           2 LTVNGPPIISST---QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR   78 (115)
T ss_dssp             CCCCSSCCEEEE---CCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCH
T ss_pred             eEEecCCEEecC---CCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccch
Confidence            567788877532   234577899999999999965 55799999998765432   111    1    13699999999


Q ss_pred             CC-CeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        159 HS-AGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       159 ~d-~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      .| +|.|.|.|.|..|.. +..+.|.|.
T Consensus        79 ~D~~G~Y~C~A~N~~G~~-~~~~~L~V~  105 (115)
T d2crya1          79 ADFQTIYNCTAWNSFGSD-TEIIRLKEQ  105 (115)
T ss_dssp             HHHHSCEEEEEECSSCEE-EEEECCCCS
T ss_pred             hcCCeEEEEEEEECCCeE-EEEEEEEEE
Confidence            98 699999999999988 688887663

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.1e-12  Score=76.99  Aligned_cols=87  Identities=16%  Similarity=0.211  Sum_probs=60.7

Q ss_pred             cCCeeEEecCCceEEEecCCcEEEEeEecc-CCCC--cEEEEeCCeeCCCCcEE--EeCcEEEEecCCCCCCeEEEEEEe
Q psy15738         95 IPPRIIYVSGAGKVEVKKGYSVTLECKADG-NPVP--NITWTRKNNNLPGGEYS--YSGNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus        95 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p--~~~W~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      .|+.+.....  ...+..|+.++|.|.+.| .|.|  .+.|++++..+......  ...+.|.|..+..+|.|.|+|.|.
T Consensus         3 ~P~~v~i~p~--~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~   80 (103)
T d1iama1           3 TPERVELAPL--PSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTE   80 (103)
T ss_dssp             CCSEEEECCC--CSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEE
T ss_pred             CCCceEEeCC--CceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEE
Confidence            3555543333  345788999999999987 4655  47899999876432111  123578888888899999999999


Q ss_pred             cCCCCcceeeEEEEE
Q psy15738        170 NMVGSSAAASIALHV  184 (187)
Q Consensus       170 n~~g~~~s~~~~l~v  184 (187)
                      |.+|.. +..+.+.+
T Consensus        81 n~~g~~-~~~~~~~~   94 (103)
T d1iama1          81 LDLRPQ-GLELFENT   94 (103)
T ss_dssp             EECGGG-TSCEEEEE
T ss_pred             eCCCCc-cCeEeeeE
Confidence            999876 34444443

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.31  E-value=3.6e-13  Score=77.09  Aligned_cols=76  Identities=20%  Similarity=0.165  Sum_probs=58.4

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE----eCcEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAA  178 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~  178 (187)
                      ......+.+|+++.|.|.+ +.|.|.+.|+++|..+.... +..    ....|.|.++...|+|.|.|.|.|..     .
T Consensus         7 ~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~-----~   80 (89)
T d1tiua_           7 PLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK-----S   80 (89)
T ss_dssp             CCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB-----C
T ss_pred             CCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE-----E
Confidence            3456789999999999997 57889999999998875543 221    23479999999999999999987743     3


Q ss_pred             eEEEEEE
Q psy15738        179 SIALHVL  185 (187)
Q Consensus       179 ~~~l~v~  185 (187)
                      ++.|.|.
T Consensus        81 sa~l~V~   87 (89)
T d1tiua_          81 AANLKVK   87 (89)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEEE
Confidence            4556553

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.29  E-value=5.3e-13  Score=79.48  Aligned_cols=73  Identities=18%  Similarity=0.355  Sum_probs=55.8

Q ss_pred             EEEecCCcEEEEeEe-ccCCCCcEEEEeCCeeCCCC--------cEE-EeCcEEEEecCCCCCCe---EEEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKA-DGNPVPNITWTRKNNNLPGG--------EYS-YSGNSLTVRHTNRHSAG---IYLCVANNMVGS  174 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~--------~~~-~~~~~l~i~~~~~~d~g---~y~C~~~n~~g~  174 (187)
                      ..+.+|+.+.|.|.+ .|.|.|.+.|++++..+...        ... ...+.|.|.+++..|+|   .|.|.|.|..|.
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~   91 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVD   91 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCS
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCC
Confidence            346789999999996 89999999999987654221        111 23568999999988766   799999999998


Q ss_pred             cceeeEE
Q psy15738        175 SAAASIA  181 (187)
Q Consensus       175 ~~s~~~~  181 (187)
                      .. ..+.
T Consensus        92 ~~-~~~~   97 (111)
T d1biha2          92 EE-VVLV   97 (111)
T ss_dssp             SC-EEEE
T ss_pred             ce-EEEE
Confidence            73 4443

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.2e-12  Score=75.48  Aligned_cols=76  Identities=18%  Similarity=0.218  Sum_probs=51.7

Q ss_pred             EEEecCCcEEEEeEecc-CC--CCcEEEEeCCeeCCCCcEE-------EeCcEEEEecCCCCCCeEEEEEEecCCCCcce
Q psy15738        108 VEVKKGYSVTLECKADG-NP--VPNITWTRKNNNLPGGEYS-------YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAA  177 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g-~p--~p~~~W~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s  177 (187)
                      ..+..|+.++|.|.+.| .|  .+.+.|++++..+......       .....|.+.....+|.|.|+|.|.|.++.. .
T Consensus        12 ~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~-~   90 (106)
T d1zxqa1          12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSR-G   90 (106)
T ss_dssp             SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGG-T
T ss_pred             CEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCC-C
Confidence            35778999999999987 34  3478999999876322110       012346666666677889999999998765 3


Q ss_pred             eeEEEEE
Q psy15738        178 ASIALHV  184 (187)
Q Consensus       178 ~~~~l~v  184 (187)
                      ..+.+.+
T Consensus        91 ~~~~~~~   97 (106)
T d1zxqa1          91 GNIFHKH   97 (106)
T ss_dssp             CCEEEEE
T ss_pred             CeeEecc
Confidence            4444443

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.1e-10  Score=67.00  Aligned_cols=74  Identities=15%  Similarity=0.234  Sum_probs=54.4

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCC---CC----------cEEE--eCcEEEEecCCCCCCeEEEEEEecC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLP---GG----------EYSY--SGNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~---~~----------~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      ......|++++|.|... .|.+.+.|++++..+.   ..          +...  .+..|.|.++..+|+|.|.|.+.|.
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            35677899999999864 5888999999886541   10          1111  2357999999999999999999887


Q ss_pred             CCCcceeeEEEEE
Q psy15738        172 VGSSAAASIALHV  184 (187)
Q Consensus       172 ~g~~~s~~~~l~v  184 (187)
                      .+..   .+.|+|
T Consensus        83 ~~t~---~~~l~V   92 (93)
T d1ccza1          83 TDTM---KFFLYV   92 (93)
T ss_dssp             CSCE---EEEEEE
T ss_pred             CcEE---EEEEEE
Confidence            6643   455655

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=1.6e-09  Score=65.55  Aligned_cols=79  Identities=16%  Similarity=0.249  Sum_probs=55.4

Q ss_pred             eEEEecCCcEEEEeEeccCC---CCcEEEEeCCeeCC------------------CCcEEE-------eCcEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNP---VPNITWTRKNNNLP------------------GGEYSY-------SGNSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p---~p~~~W~~~~~~~~------------------~~~~~~-------~~~~l~i~~~~~  158 (187)
                      .+.+..|+++.|.|......   ...+.|++.+....                  ..+...       .+.+|.|.+++.
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence            36778999999999975433   23589998653100                  001111       124799999999


Q ss_pred             CCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        159 HSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       159 ~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      +|.|.|.|.+.+..+.. +..+.|.|..
T Consensus        91 ~D~G~Y~C~v~~~~~~~-~~~v~L~V~~  117 (126)
T d1pkoa_          91 SDEGGYTCFFRDHSYQE-EAAVELKVED  117 (126)
T ss_dssp             GGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             hHCeEEEEEEEECCCEE-EEEEEEEEeC
Confidence            99999999999987766 5788888864

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.94  E-value=1.2e-09  Score=63.15  Aligned_cols=78  Identities=17%  Similarity=0.362  Sum_probs=55.9

Q ss_pred             EEEecCCcEEEEeEecc-C-CCCcEEEEeCCeeCC-----------CCcEE-EeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        108 VEVKKGYSVTLECKADG-N-PVPNITWTRKNNNLP-----------GGEYS-YSGNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g-~-p~p~~~W~~~~~~~~-----------~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      .....|+++.|.|.... . ...+|.|++++..+.           ..+.. ..+++|.|.+++.+|+|.|.|.+.+..|
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g   84 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   84 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCC
Confidence            45667999999996322 2 234799999886541           11111 2357899999999999999999999988


Q ss_pred             Ccc-eeeEEEEEE
Q psy15738        174 SSA-AASIALHVL  185 (187)
Q Consensus       174 ~~~-s~~~~l~v~  185 (187)
                      ... ++.+.|.|.
T Consensus        85 ~~~~~~~~~L~V~   97 (98)
T d1hnga1          85 TRILNKALDLRIL   97 (98)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEE
Confidence            753 467777774

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=2.8e-09  Score=62.54  Aligned_cols=75  Identities=20%  Similarity=0.251  Sum_probs=52.7

Q ss_pred             EecCCcEEEEeEeccCCCCcEEEEeCCeeCCC--------------------CcEE-EeCcEEEEecCCCCCCeEEEEEE
Q psy15738        110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPG--------------------GEYS-YSGNSLTVRHTNRHSAGIYLCVA  168 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~--------------------~~~~-~~~~~l~i~~~~~~d~g~y~C~~  168 (187)
                      +.+|+++.|.|.........+.|++.......                    ++.. ..+++|.|.+++.+|+|.|.|.+
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~v   90 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDM   90 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEEE
Confidence            46899999999743333557999986532110                    1111 24578999999999999999999


Q ss_pred             ecCCCCcceeeEEEEE
Q psy15738        169 NNMVGSSAAASIALHV  184 (187)
Q Consensus       169 ~n~~g~~~s~~~~l~v  184 (187)
                      .+..+......+.|.|
T Consensus        91 ~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          91 TDENYRRTQATVRFHV  106 (107)
T ss_dssp             EETTEEECCCCEEECC
T ss_pred             EECCCCEEEEEEEEEE
Confidence            8876544356777765

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.2e-08  Score=61.21  Aligned_cols=78  Identities=26%  Similarity=0.420  Sum_probs=55.1

Q ss_pred             EEEecCCcEEEEeEeccCCC----CcEEEEeCCeeCC----------------------CCcEEE-------eCcEEEEe
Q psy15738        108 VEVKKGYSVTLECKADGNPV----PNITWTRKNNNLP----------------------GGEYSY-------SGNSLTVR  154 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~----p~~~W~~~~~~~~----------------------~~~~~~-------~~~~l~i~  154 (187)
                      ....+|+++.|.|.....+.    ..+.|++......                      .++...       ....|.|.
T Consensus        14 v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~   93 (124)
T d1eaja_          14 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVT   93 (124)
T ss_dssp             EEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEEC
T ss_pred             EEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEc
Confidence            56789999999999765432    2478986321100                      011111       11369999


Q ss_pred             cCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738        155 HTNRHSAGIYLCVANNMVGSSAAASIALHVLC  186 (187)
Q Consensus       155 ~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~  186 (187)
                      ++...|.|.|.|.+.+..+.. +..+.|.|.+
T Consensus        94 ~v~~~D~G~Y~C~v~~~~~~~-~~~~~L~V~V  124 (124)
T d1eaja_          94 NLQLSDIGTYQCKVKKAPGVA-NKKIHLVVLV  124 (124)
T ss_dssp             SCCGGGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             ccEEccCEEEEEEEEECCCeE-EeEEEEEEEC
Confidence            999999999999999988766 6888888875

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=6.2e-09  Score=60.65  Aligned_cols=36  Identities=6%  Similarity=-0.159  Sum_probs=25.7

Q ss_pred             eeEEEEEecccceeEEe--eccceeeEEEEEEEEcCCe
Q psy15738         63 SYILAMEKEEEERKKKK--KRKKRKKKKKKKEKRIPPR   98 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~--~~~~~~~~~~~l~v~~~p~   98 (187)
                      +.|..++.+|.|.|+|.  +..+..+..+.|.|..+|.
T Consensus        64 L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P~  101 (103)
T d1wwbx_          64 LQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG  101 (103)
T ss_dssp             EEEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCCCC
T ss_pred             EEECCCCHHhCceEEEEEeccCCEEEEEEEEEEEeCCC
Confidence            33778889999999994  4455566666666666554

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=6.1e-09  Score=60.89  Aligned_cols=33  Identities=3%  Similarity=-0.158  Sum_probs=24.8

Q ss_pred             EEEEEecccceeEEe--eccceeeEEEEEEEEcCC
Q psy15738         65 ILAMEKEEEERKKKK--KRKKRKKKKKKKEKRIPP   97 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~--~~~~~~~~~~~l~v~~~p   97 (187)
                      |..+..+|.|.|+|.  +..+..+.++.|.|..+|
T Consensus        66 i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P  100 (105)
T d1wwca_          66 FNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP  100 (105)
T ss_dssp             EESCCGGGCEEEEEEEEETTEEEEEEEEECCSCCC
T ss_pred             EeecccccceEEEEEEEcCCCEEEEEEEEEEEeCC
Confidence            778889999999994  445666677777776655

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=98.70  E-value=1.7e-08  Score=58.65  Aligned_cols=67  Identities=6%  Similarity=-0.029  Sum_probs=38.6

Q ss_pred             eEEccCCCCeeEEEeC-eEeee-ccEEEeeccccccceeEEEEEecccceeEEe--eccceeeEEEEEEEE
Q psy15738         28 IMFADSRPESTFWIFG-KLITS-CSYIILATSLLHYLSYILAMEKEEEERKKKK--KRKKRKKKKKKKEKR   94 (187)
Q Consensus        28 ~~~~~~~~~~~~w~~~-~~~~~-~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~--~~~~~~~~~~~l~v~   94 (187)
                      |.+.+.+.+...|+++ ..+.. .++.+...........|..+..+|.|.|+|.  +..+..+.++.|.|.
T Consensus        30 C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          30 CKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE  100 (102)
T ss_dssp             EEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEEEEEE
Confidence            4444444555566643 44432 2333333232233344778889999999994  455666777777775

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.68  E-value=2.6e-08  Score=57.37  Aligned_cols=33  Identities=6%  Similarity=-0.135  Sum_probs=24.9

Q ss_pred             eeEEEEEecccceeEE--eeccceeeEEEEEEEEc
Q psy15738         63 SYILAMEKEEEERKKK--KKRKKRKKKKKKKEKRI   95 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c--~~~~~~~~~~~~l~v~~   95 (187)
                      +.|..+..+|.|.|+|  .+..+..+..+.|.|..
T Consensus        63 L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          63 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA   97 (98)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEeccCccccCEEEEEEEEECCcEEEEEEEEEEEE
Confidence            3477888899999999  44566667778888763

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.3e-08  Score=59.61  Aligned_cols=75  Identities=8%  Similarity=-0.006  Sum_probs=42.9

Q ss_pred             CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEee-
Q psy15738          2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKK-   80 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~-   80 (187)
                      -++|.|+++|++||++|......  ...+.....              .     .......+.|..+..+|.|.|+|.+ 
T Consensus        25 ~G~P~P~v~W~~ng~~l~~~~~~--~~~~~~~~~--------------~-----~~~~~~~L~i~~~~~~D~G~Y~C~A~   83 (107)
T d1he7a_          25 DGQPAPSLRWLFNGSVLNETSFI--FTEFLEPAA--------------N-----ETVRHGCLRLNQPTHVNNGNYTLLAA   83 (107)
T ss_dssp             CCSSCCEEEEEETTEECCCCSSE--EEEEECCCS--------------S-----CCCEEEEEEEESCCGGGCEEEEEEEE
T ss_pred             EEecCCeEEEEEeeeEccCccce--eeeeeeeee--------------e-----eeccceEEEECcccHHHCcEEEEEEE
Confidence            47899999999999987521000  000000000              0     0000112237778889999999944 


Q ss_pred             -ccceeeEEEEEEEEcCC
Q psy15738         81 -RKKRKKKKKKKEKRIPP   97 (187)
Q Consensus        81 -~~~~~~~~~~l~v~~~p   97 (187)
                       ..+..+..+.|.|..+|
T Consensus        84 N~~G~~~~~i~v~v~~~P  101 (107)
T d1he7a_          84 NPFGQASASIMAAFMDNP  101 (107)
T ss_dssp             ETTEEEEEEEEECCCSCT
T ss_pred             eCCCEEEEEEEEEEEcCC
Confidence             45555666677666666

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.61  E-value=1.1e-08  Score=58.90  Aligned_cols=31  Identities=0%  Similarity=-0.086  Sum_probs=22.3

Q ss_pred             eeEEEEEecccceeEE--eeccceeeEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKK--KKRKKRKKKKKKKEK   93 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c--~~~~~~~~~~~~l~v   93 (187)
                      +.|..+..+|.|.|+|  .+..+..+.++.|+|
T Consensus        64 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   96 (97)
T d3dara1          64 LIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   96 (97)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEECCCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            3477888899999999  444555666667665

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=3.8e-08  Score=56.95  Aligned_cols=36  Identities=14%  Similarity=0.041  Sum_probs=27.3

Q ss_pred             eeEEEEEecccceeEE--eeccceeeEEEEEEEEcCCe
Q psy15738         63 SYILAMEKEEEERKKK--KKRKKRKKKKKKKEKRIPPR   98 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c--~~~~~~~~~~~~l~v~~~p~   98 (187)
                      +.|..+..+|.|.|+|  .+..+..+..+.|.|...|.
T Consensus        58 L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P~   95 (101)
T d2cqva1          58 LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD   95 (101)
T ss_dssp             EEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCS
T ss_pred             EEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEEecCC
Confidence            3477888899999999  44466677788888887664

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=6.1e-08  Score=55.85  Aligned_cols=75  Identities=17%  Similarity=0.158  Sum_probs=52.8

Q ss_pred             EEecCCcEEEEeEeccCCCCcEEEEeCCeeCCC--CcE----EEeCcEEEEecCCCCCCeEEEEEEecCCC-CcceeeEE
Q psy15738        109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPG--GEY----SYSGNSLTVRHTNRHSAGIYLCVANNMVG-SSAAASIA  181 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~--~~~----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g-~~~s~~~~  181 (187)
                      .+..|+.++|.|... .+...+.|++++.....  ...    ......+.|.+++..|+|.|.|...+... +..|..+.
T Consensus        17 ~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sdpl~   95 (99)
T d1ucta1          17 VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLE   95 (99)
T ss_dssp             EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEE
T ss_pred             ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCcccCCCCCEE
Confidence            578899999999864 24557889987742111  100    01235689999999999999999988765 33477777


Q ss_pred             EEE
Q psy15738        182 LHV  184 (187)
Q Consensus       182 l~v  184 (187)
                      |.|
T Consensus        96 L~V   98 (99)
T d1ucta1          96 LVV   98 (99)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            776

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=5.1e-08  Score=56.27  Aligned_cols=33  Identities=9%  Similarity=-0.011  Sum_probs=24.3

Q ss_pred             eeEEEEEecccceeEEee--ccceeeEEEEEEEEc
Q psy15738         63 SYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRI   95 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~   95 (187)
                      +.|..+..+|.|.|+|.+  ..+..+..+.|+|..
T Consensus        65 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          65 LTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEeCCCCcccCEEEEEEEEECCCEEEEEEEEEEEE
Confidence            347788999999999944  455666777777753

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=4.9e-07  Score=51.47  Aligned_cols=75  Identities=17%  Similarity=0.147  Sum_probs=52.9

Q ss_pred             EEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC--cE--EEeCcEEEEecCCCCCCeEEEEEEecCCC-CcceeeEEEE
Q psy15738        109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG--EY--SYSGNSLTVRHTNRHSAGIYLCVANNMVG-SSAAASIALH  183 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~g-~~~s~~~~l~  183 (187)
                      .+..|+.++|.|.... +...+.|+++|......  ..  ......+.|.+++..|+|.|.|...+... +..|..+.|.
T Consensus        14 ~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~leL~   92 (95)
T d1olla1          14 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV   92 (95)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred             cccCCCcEEEEEecCC-CccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCCccCCCCCEEEE
Confidence            5779999999998643 34578899988532110  00  00124689999999999999999887654 3447788877


Q ss_pred             E
Q psy15738        184 V  184 (187)
Q Consensus       184 v  184 (187)
                      |
T Consensus        93 V   93 (95)
T d1olla1          93 V   93 (95)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=5.2e-08  Score=55.92  Aligned_cols=72  Identities=21%  Similarity=0.341  Sum_probs=49.3

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCeeC-----C------C----CcEEE-------eCcEEEEecCCCCCCeEEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNL-----P------G----GEYSY-------SGNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~-----~------~----~~~~~-------~~~~l~i~~~~~~d~g~y~  165 (187)
                      ....+|++++|.|.........+.|++.....     .      .    .+...       .+.+|.|.++..+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            34578999999999877667789999854311     0      0    01110       1236999999999999999


Q ss_pred             EEEecCCCCcceeeEEEEE
Q psy15738        166 CVANNMVGSSAAASIALHV  184 (187)
Q Consensus       166 C~~~n~~g~~~s~~~~l~v  184 (187)
                      |.+.+.     +..+.|.|
T Consensus        84 C~v~~~-----~~~v~L~V   97 (97)
T d2nxyb1          84 CEVEDQ-----KEEVQLLV   97 (97)
T ss_dssp             EEETTE-----EEEEEEEE
T ss_pred             EEEecC-----CeEEEEEC
Confidence            998753     34555554

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.51  E-value=5.3e-08  Score=54.97  Aligned_cols=61  Identities=8%  Similarity=0.017  Sum_probs=35.2

Q ss_pred             eEEccCCCCeeEEEeC-eEeeeccEEEeeccccccceeEEEEEecccceeEEeec--cceeeEEEEEEE
Q psy15738         28 IMFADSRPESTFWIFG-KLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR--KKRKKKKKKKEK   93 (187)
Q Consensus        28 ~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v   93 (187)
                      |.+.+.+.+...|+++ ..+...++.+.. +    ++.|..+..+|.|.|+|.+.  .+.....+.|.|
T Consensus        25 C~~~g~P~p~v~W~~~~~~i~~~~~~~~~-~----~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          25 CKVTGLPAPNVVWSHNAKPLSGGRATVTD-S----GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV   88 (89)
T ss_dssp             CEEEEESCCCCEEEETTEECCSSSEEEET-T----EEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEeCCCEEEEEeCCccCccccEEEee-e----eEEECCCChhhCEEEEEEEEECCCEEEEEEEEEE
Confidence            4444444445555533 445444443332 2    24478889999999999444  455555666655

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.50  E-value=9.8e-08  Score=55.85  Aligned_cols=31  Identities=10%  Similarity=-0.127  Sum_probs=23.2

Q ss_pred             eeEEEEEecccceeEEee--ccceeeEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKK--RKKRKKKKKKKEK   93 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v   93 (187)
                      ..|.++..+|.|.|+|.+  ..+.....+.|+|
T Consensus        76 L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          76 LYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             EEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEECCCCHHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            447788889999999954  4556666777776

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=5.7e-08  Score=58.63  Aligned_cols=91  Identities=11%  Similarity=-0.062  Sum_probs=46.2

Q ss_pred             CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCe--EeeeccEEEeeccccccceeEEEEEecccceeEEe
Q psy15738          2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGK--LITSCSYIILATSLLHYLSYILAMEKEEEERKKKK   79 (187)
Q Consensus         2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~   79 (187)
                      .+.|.|++.|+++|.++.....................|....  .....++.+.... ....+.|..+..+|.|.|+|.
T Consensus        34 ~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~  112 (130)
T d1gxea_          34 SGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTK-DRSIFTVEGAEKEDEGVYTVT  112 (130)
T ss_dssp             CSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEET-TEEEEECSCCCTTTCEEEEEE
T ss_pred             EEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECC-CEEEEEECcCChhcCEEEEEE
Confidence            5789999999999988762111110000011111111111111  0112333333222 223344788999999999995


Q ss_pred             ec--cceeeEEEEEEE
Q psy15738         80 KR--KKRKKKKKKKEK   93 (187)
Q Consensus        80 ~~--~~~~~~~~~l~v   93 (187)
                      +.  .+..+..+.|.|
T Consensus       113 a~N~~G~~~~~~~l~V  128 (130)
T d1gxea_         113 VKNPVGEDQVNLTVKV  128 (130)
T ss_dssp             EECSSCEEEEEEEEEE
T ss_pred             EEECCCEEEEEEEEEE
Confidence            54  555556666665

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.47  E-value=1.3e-06  Score=51.46  Aligned_cols=69  Identities=19%  Similarity=0.432  Sum_probs=48.8

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-------CCC------cEEE------eCcEEEEecCCCCCCeE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-------PGG------EYSY------SGNSLTVRHTNRHSAGI  163 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-------~~~------~~~~------~~~~l~i~~~~~~d~g~  163 (187)
                      |..+.+.+|+.++|.|.....+...+.||+...  ..       ...      +...      ...+|.|.++..+|+|.
T Consensus         7 P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~   86 (114)
T d2cdea1           7 PQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSAS   86 (114)
T ss_dssp             CSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSE
T ss_pred             CCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcc
Confidence            445678899999999998776667899997431  10       000      1111      12369999999999999


Q ss_pred             EEEEEecCCC
Q psy15738        164 YLCVANNMVG  173 (187)
Q Consensus       164 y~C~~~n~~g  173 (187)
                      |.|.+.....
T Consensus        87 Y~Ca~~~~~~   96 (114)
T d2cdea1          87 YICVVSDRGS   96 (114)
T ss_dssp             EEEEEECSCT
T ss_pred             cceeeecCCC
Confidence            9999987543

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.2e-06  Score=49.86  Aligned_cols=76  Identities=16%  Similarity=0.213  Sum_probs=53.2

Q ss_pred             EEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEE-eCcEEEEecCCCCCCeEEEEEEecCC----CCcceeeEEEE
Q psy15738        109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSY-SGNSLTVRHTNRHSAGIYLCVANNMV----GSSAAASIALH  183 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~----g~~~s~~~~l~  183 (187)
                      .+..|+.++|.|.........+.|+|+|.......... ......|.+++..|+|.|.|.-....    .+..|..+.|.
T Consensus        15 ~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~~p~~~S~~Sd~leL~   94 (96)
T d1ucta2          15 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELV   94 (96)
T ss_dssp             EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEE
T ss_pred             ccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcCCCCCCccCCCCCEEEE
Confidence            67899999999986433445688999986443332221 22468889999999999999876443    23447777776


Q ss_pred             E
Q psy15738        184 V  184 (187)
Q Consensus       184 v  184 (187)
                      |
T Consensus        95 V   95 (96)
T d1ucta2          95 V   95 (96)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.6e-07  Score=52.25  Aligned_cols=32  Identities=6%  Similarity=0.055  Sum_probs=22.9

Q ss_pred             EEEEEecccceeEEee--ccceeeEEEEEEEEcC
Q psy15738         65 ILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIP   96 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~   96 (187)
                      +..++.+|.|.|.|.+  ..+..+..+.|+|..|
T Consensus        51 ~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~P   84 (84)
T d2oz4a3          51 SVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP   84 (84)
T ss_dssp             CEECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             eeccccCCCCEEEEEEEcCCCEEEEEEEEEEECC
Confidence            4567788999999944  4555667777777653

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.5e-07  Score=53.23  Aligned_cols=31  Identities=6%  Similarity=-0.028  Sum_probs=22.0

Q ss_pred             eEEEEEecccceeEEeec--cc-eeeEEEEEEEE
Q psy15738         64 YILAMEKEEEERKKKKKR--KK-RKKKKKKKEKR   94 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~--~~-~~~~~~~l~v~   94 (187)
                      .|..++.+|.|.|+|.+.  .+ ..+..+.|+|.
T Consensus        57 ~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          57 SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE   90 (91)
T ss_dssp             EESSCCGGGCEEEEEEESSCTTCEECCCEEEEEE
T ss_pred             EECCCCcccCEEEEEEEEECCCCEEEEEEEEEEE
Confidence            367888899999999553  33 34567777775

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=5.2e-07  Score=50.83  Aligned_cols=31  Identities=10%  Similarity=0.007  Sum_probs=23.6

Q ss_pred             eeEEEEEecccceeEEeeccceeeEEEEEEEEc
Q psy15738         63 SYILAMEKEEEERKKKKKRKKRKKKKKKKEKRI   95 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~~   95 (187)
                      +.|..+..+|+|.|+|.+...  ..++.|+|..
T Consensus        59 L~I~~v~~~D~G~Y~C~a~n~--~~~a~l~V~~   89 (90)
T d1x44a1          59 LIIEGATKADAAEYSVMTTGG--QSSAKLSVDL   89 (90)
T ss_dssp             EEEEEECTTTCSEEEEEETTE--EEEEEEEEEC
T ss_pred             EEECccccccCEEEEEEEecc--eEEEEEEEEE
Confidence            448899999999999977653  4567777753

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.43  E-value=5.7e-08  Score=55.06  Aligned_cols=30  Identities=7%  Similarity=0.057  Sum_probs=21.1

Q ss_pred             EEEEEecccceeEEee--ccceeeEEEEEEEE
Q psy15738         65 ILAMEKEEEERKKKKK--RKKRKKKKKKKEKR   94 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~   94 (187)
                      |..+..+|.|.|+|.+  ..+..+..+.|.|.
T Consensus        59 i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1tnna_          59 ISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ   90 (91)
T ss_dssp             CSSCCSCCCEEEEEECBCSSCBCCEEEEEECC
T ss_pred             ecCCCHHHCEEEEEEEEECCCEEEEEEEEEEE
Confidence            6678888999999944  44455566666653

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=5.7e-07  Score=51.99  Aligned_cols=17  Identities=18%  Similarity=0.354  Sum_probs=14.9

Q ss_pred             CCCCCeeEEEEcCeeee
Q psy15738          3 ADSRPESTFWIFGKPIT   19 (187)
Q Consensus         3 ~~p~p~i~w~~~g~~l~   19 (187)
                      ++|.|+|.|++||++|.
T Consensus        31 ~~p~P~i~W~kdg~~l~   47 (103)
T d1iray2          31 NNELPKLQWYKDCKPLL   47 (103)
T ss_dssp             TTBCCCCEEEETTEECC
T ss_pred             CCCCCEEEEEECCcccc
Confidence            67899999999999874

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.42  E-value=1.3e-06  Score=51.78  Aligned_cols=80  Identities=18%  Similarity=0.262  Sum_probs=49.2

Q ss_pred             CceEEEecCCcEEEEeEeccC----CCCcEEEEeCCeeC-----------------C----CCcEEE------eCcEEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGN----PVPNITWTRKNNNL-----------------P----GGEYSY------SGNSLTV  153 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~----p~p~~~W~~~~~~~-----------------~----~~~~~~------~~~~l~i  153 (187)
                      +....+..|+++.|.|.....    ....+.|++....-                 .    .++...      ....|.|
T Consensus         6 p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (119)
T d1neua_           6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVI   85 (119)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEE
T ss_pred             CCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEE
Confidence            445678889999999986432    23368898632100                 0    011111      1136999


Q ss_pred             ecCCCCCCeEEEEEEecCCCCcc-eeeEEEEE
Q psy15738        154 RHTNRHSAGIYLCVANNMVGSSA-AASIALHV  184 (187)
Q Consensus       154 ~~~~~~d~g~y~C~~~n~~g~~~-s~~~~l~v  184 (187)
                      .++...|+|.|.|.+.+..+... ...++|.|
T Consensus        86 ~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          86 HNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             CSCCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             CCCChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            99999999999999998654331 34566665

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.42  E-value=8.4e-08  Score=54.55  Aligned_cols=29  Identities=7%  Similarity=-0.060  Sum_probs=20.7

Q ss_pred             EEEEEecccceeEEee--ccceeeEEEEEEE
Q psy15738         65 ILAMEKEEEERKKKKK--RKKRKKKKKKKEK   93 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v   93 (187)
                      |..+..+|.|.|+|.+  ..+..+..+.|.|
T Consensus        62 I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          62 FPSAKRADSGNYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             CTTBCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cccccccccEEEEEEEEECCCEEEEEEEEEE
Confidence            6688889999999944  4455555666655

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=7.1e-07  Score=52.72  Aligned_cols=81  Identities=19%  Similarity=0.287  Sum_probs=51.5

Q ss_pred             CCceEEEecCCcEEEEeEeccCC---CCcEEEEeCCeeC---------------CCCcEEE--e----CcEEEEecCCCC
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNP---VPNITWTRKNNNL---------------PGGEYSY--S----GNSLTVRHTNRH  159 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p---~p~~~W~~~~~~~---------------~~~~~~~--~----~~~l~i~~~~~~  159 (187)
                      .|+.+.+.+|++++|.|......   ...+.|++.....               ..++...  .    ...|.|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            45567788999999999864321   2346788743210               0111111  1    136999999999


Q ss_pred             CCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738        160 SAGIYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       160 d~g~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      |+|.|.|.+....... ...+.|.|.
T Consensus        85 DsG~Y~C~v~~~~~~~-~~~v~L~V~  109 (116)
T d1xeda_          85 DSGRYKCGLGINSRGL-SFDVSLEVL  109 (116)
T ss_dssp             GCEEEEEEESCGGGCC-EEEEEEEEE
T ss_pred             CCEEEEEEEEcCCCCc-eEeEEEEEE
Confidence            9999999987543333 456777775

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=1.3e-06  Score=52.07  Aligned_cols=66  Identities=23%  Similarity=0.468  Sum_probs=46.4

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeC--CeeCCC-----------C------------cEEE--e-C--cEEEEe
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRK--NNNLPG-----------G------------EYSY--S-G--NSLTVR  154 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~--~~~~~~-----------~------------~~~~--~-~--~~l~i~  154 (187)
                      |..+.+.+|++++|.|.+.+.....+.|++-  +..+..           .            +...  . .  ..|.|.
T Consensus         8 P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~   87 (122)
T d1nezg_           8 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLN   87 (122)
T ss_dssp             SSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEES
T ss_pred             CCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEc
Confidence            4456788999999999988777778999872  221100           0            0000  0 1  269999


Q ss_pred             cCCCCCCeEEEEEEec
Q psy15738        155 HTNRHSAGIYLCVANN  170 (187)
Q Consensus       155 ~~~~~d~g~y~C~~~n  170 (187)
                      ++..+|+|.|.|.+..
T Consensus        88 ~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          88 KFSKENEGYYFCSVIS  103 (122)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             ccccCCCEEEEeeEeC
Confidence            9999999999998763

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=5.2e-06  Score=48.21  Aligned_cols=80  Identities=13%  Similarity=0.245  Sum_probs=48.9

Q ss_pred             ceEEEecCCcEEEEeEeccCC--CCcEEEEeCCe--e-------------CCCCcEEE------eCcEEEEecCCCCCCe
Q psy15738        106 GKVEVKKGYSVTLECKADGNP--VPNITWTRKNN--N-------------LPGGEYSY------SGNSLTVRHTNRHSAG  162 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~~--~-------------~~~~~~~~------~~~~l~i~~~~~~d~g  162 (187)
                      +.+...+|+++.|.|......  ...+.|++...  .             ....+...      ..-.|.|.+++.+|+|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG   83 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG   83 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence            346778999999999864332  23467987321  1             00111111      1136999999999999


Q ss_pred             EEEEEEecCCCCcceeeEEEEEE
Q psy15738        163 IYLCVANNMVGSSAAASIALHVL  185 (187)
Q Consensus       163 ~y~C~~~n~~g~~~s~~~~l~v~  185 (187)
                      .|.|.+.............+.+.
T Consensus        84 ~Y~C~v~~~~~~~~~~~~~~~l~  106 (108)
T d1hkfa_          84 HYWCRIYRPSDNSVSKSVRFYLV  106 (108)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEEE
T ss_pred             EEEEEEecCCCCcEEEeeEEEEE
Confidence            99999886544332334444443

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.1e-06  Score=51.24  Aligned_cols=77  Identities=16%  Similarity=0.266  Sum_probs=49.6

Q ss_pred             EecCCcEEEEeEecc-CCCC--cEEEEeCCeeCCCCc---------EEEeCcEEEEecCCCCC-CeEEEEEEecCCCCcc
Q psy15738        110 VKKGYSVTLECKADG-NPVP--NITWTRKNNNLPGGE---------YSYSGNSLTVRHTNRHS-AGIYLCVANNMVGSSA  176 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g-~p~p--~~~W~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d-~g~y~C~~~n~~g~~~  176 (187)
                      +.+|+.+.|.|.+.+ .|.+  .+.|++++..+....         .....+.|.+. .++.| ...|.|.|.+.++...
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~-~~~~D~g~~ltC~a~~~~~~~~   91 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFT-PVIEDIGKVLVCRAKLHIDEMD   91 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEEC-CCGGGTTCEEEEEEEECSCCCT
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEcc-CChHHCCcEEEEEEEcCcCCcc
Confidence            678999999999875 5644  588999987642110         01122345554 44445 5589999998875532


Q ss_pred             ------eeeEEEEEEeC
Q psy15738        177 ------AASIALHVLCK  187 (187)
Q Consensus       177 ------s~~~~l~v~~~  187 (187)
                            .....|.|+|.
T Consensus        92 ~~~~~~~t~~~L~V~~~  108 (109)
T d1vcaa1          92 SVPTVRQAVKELQVYIS  108 (109)
T ss_dssp             TSCSEEEEEEECCEECC
T ss_pred             ccccccceeEEeEEEeC
Confidence                  23556777763

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.38  E-value=3e-06  Score=49.91  Aligned_cols=69  Identities=17%  Similarity=0.310  Sum_probs=48.4

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC-------------CCCcEEE------eCcEEEEecCCCCCCeE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL-------------PGGEYSY------SGNSLTVRHTNRHSAGI  163 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~-------------~~~~~~~------~~~~l~i~~~~~~d~g~  163 (187)
                      +..+.+.+|+.++|.|.........+.||+..  ..+             ...+...      ....|.|.++..+|+|.
T Consensus         8 ~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~   87 (115)
T d1lp9e1           8 EGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSAL   87 (115)
T ss_dssp             CSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCcc
Confidence            44567889999999999877777789999742  110             0011111      12359999999999999


Q ss_pred             EEEEEecCCC
Q psy15738        164 YLCVANNMVG  173 (187)
Q Consensus       164 y~C~~~n~~g  173 (187)
                      |.|.+....+
T Consensus        88 YyCa~~~~~~   97 (115)
T d1lp9e1          88 YYCALFLASS   97 (115)
T ss_dssp             EEEEEEECSS
T ss_pred             ceEEEEcCCC
Confidence            9998875433

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.5e-07  Score=52.67  Aligned_cols=31  Identities=6%  Similarity=-0.131  Sum_probs=22.1

Q ss_pred             ceeEEEEEecccceeEEeeccceeeEEEEEEEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKKRKKKKKKKEKR   94 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~   94 (187)
                      .+.|..+...|+|.|+|.+..  .+.++.|.|.
T Consensus        63 ~L~I~~~~~~D~G~Y~c~a~n--~~~s~~l~V~   93 (94)
T d1pd6a_          63 TLTISQCSLADDAAYQCVVGG--EKCSTELFVK   93 (94)
T ss_dssp             EEEECSCSSSSCEEEEEEETT--EEECCEEEEE
T ss_pred             EeecCCCCceecEEEEEEEee--EEEEEEEEEE
Confidence            344778899999999997754  3455566654

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.6e-07  Score=52.10  Aligned_cols=32  Identities=0%  Similarity=-0.212  Sum_probs=23.7

Q ss_pred             eeEEEEEecccceeEEee--ccceeeEEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKK--RKKRKKKKKKKEKR   94 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~   94 (187)
                      +.|.+++.+|+|.|+|.+  ..+..+.++.|.|+
T Consensus        57 L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          57 LTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVY   90 (90)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEcCccChhhCCcEEEEEEeCCCcEEEEEEEEEC
Confidence            337889999999999944  45556677777764

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.34  E-value=1.5e-06  Score=50.58  Aligned_cols=68  Identities=19%  Similarity=0.348  Sum_probs=47.7

Q ss_pred             cCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-------------CCCcEEE----eCcEEEEecCCCCCCeE
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-------------PGGEYSY----SGNSLTVRHTNRHSAGI  163 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-------------~~~~~~~----~~~~l~i~~~~~~d~g~  163 (187)
                      ..|..+.+.+|++++|.|.........+.||+...  ..             ...+...    ....|.|.++..+|+|.
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~   85 (107)
T d1kcvl1           6 QSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDAD   85 (107)
T ss_dssp             ESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCce
Confidence            44556778899999999998766666799997421  10             0111111    12469999999999999


Q ss_pred             EEEEEec
Q psy15738        164 YLCVANN  170 (187)
Q Consensus       164 y~C~~~n  170 (187)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d1kcvl1          86 YYCGQSY   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEEecC
Confidence            9998764

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.32  E-value=4.4e-07  Score=51.86  Aligned_cols=31  Identities=16%  Similarity=0.009  Sum_probs=21.8

Q ss_pred             eeEEEEEecccceeEEeecc---ceeeEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKKRK---KRKKKKKKKEK   93 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~---~~~~~~~~l~v   93 (187)
                      ..|..++.+|.|.|+|.+..   ...+..+.|+|
T Consensus        63 L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~V   96 (97)
T d1biha3          63 LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV   96 (97)
T ss_dssp             EEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEE
T ss_pred             EEEEeccccccEEEEEEEEECCCcEEEEEEEEEE
Confidence            33678889999999995542   33455677776

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=1.8e-06  Score=50.19  Aligned_cols=68  Identities=18%  Similarity=0.354  Sum_probs=47.8

Q ss_pred             cCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-------------CCCcEEE----eCcEEEEecCCCCCCeE
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-------------PGGEYSY----SGNSLTVRHTNRHSAGI  163 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-------------~~~~~~~----~~~~l~i~~~~~~d~g~  163 (187)
                      ..|..+.+.+|++++|.|...+.....+.||+...  .+             ...+...    ....|.|.++..+|+|.
T Consensus         6 QsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1ospl1           6 QSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVAT   85 (107)
T ss_dssp             CCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSE
T ss_pred             eeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCc
Confidence            44556778899999999998766555799998321  10             0111111    12579999999999999


Q ss_pred             EEEEEec
Q psy15738        164 YLCVANN  170 (187)
Q Consensus       164 y~C~~~n  170 (187)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d1ospl1          86 YFCQQYW   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEeecc
Confidence            9998764

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.31  E-value=2.4e-06  Score=50.28  Aligned_cols=66  Identities=12%  Similarity=0.321  Sum_probs=45.5

Q ss_pred             CceEEEecCCcEEEEeEeccC-CCCcEEEEeCCe-----eC------------------CCCcEEE------eCcEEEEe
Q psy15738        105 AGKVEVKKGYSVTLECKADGN-PVPNITWTRKNN-----NL------------------PGGEYSY------SGNSLTVR  154 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~-p~p~~~W~~~~~-----~~------------------~~~~~~~------~~~~l~i~  154 (187)
                      |....+.+|+++.|.|...+. ....+.|++-..     .+                  ...+...      ....|.|.
T Consensus         5 P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   84 (115)
T d2atpb1           5 PSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIM   84 (115)
T ss_dssp             CSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEEC
T ss_pred             CCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeec
Confidence            455678899999999998764 345689987421     00                  0111111      12469999


Q ss_pred             cCCCCCCeEEEEEEec
Q psy15738        155 HTNRHSAGIYLCVANN  170 (187)
Q Consensus       155 ~~~~~d~g~y~C~~~n  170 (187)
                      ++..+|+|.|.|.+..
T Consensus        85 ~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          85 NVKPEDSDFYFCATVG  100 (115)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccCCCCCcEEEEeEcC
Confidence            9999999999998763

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.29  E-value=1.7e-06  Score=50.80  Aligned_cols=70  Identities=19%  Similarity=0.430  Sum_probs=48.4

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC-------CCC------cEEE------eCcEEEEecCCCCCCe
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL-------PGG------EYSY------SGNSLTVRHTNRHSAG  162 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~-------~~~------~~~~------~~~~l~i~~~~~~d~g  162 (187)
                      .|..+.+.+|+++.|.|...+.....+.||+..  ..+       ...      +...      ....|.|.++..+|+|
T Consensus         6 ~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg   85 (113)
T d2bnqd1           6 IPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSA   85 (113)
T ss_dssp             SSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCE
T ss_pred             eCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCc
Confidence            355567889999999999877655678899832  110       000      0100      1237999999999999


Q ss_pred             EEEEEEecCCC
Q psy15738        163 IYLCVANNMVG  173 (187)
Q Consensus       163 ~y~C~~~n~~g  173 (187)
                      .|.|.+....+
T Consensus        86 ~YyCa~~~~~~   96 (113)
T d2bnqd1          86 TYLCAVRPTSG   96 (113)
T ss_dssp             EEEEEEEESSS
T ss_pred             EEeEeEecCCC
Confidence            99999885543

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=5.9e-07  Score=50.41  Aligned_cols=62  Identities=5%  Similarity=-0.114  Sum_probs=35.4

Q ss_pred             ceEEc-cCCCCeeEEEeC-eEeeeccEEEeeccccccceeEEEEEecccceeEEe--eccceeeEEEEEEE
Q psy15738         27 AIMFA-DSRPESTFWIFG-KLITSCSYIILATSLLHYLSYILAMEKEEEERKKKK--KRKKRKKKKKKKEK   93 (187)
Q Consensus        27 ~~~~~-~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~--~~~~~~~~~~~l~v   93 (187)
                      .|.+. +.+.....|+++ ..+...+... ..+.    +.|..+..+|.|.|+|.  +..+..+.++.|.|
T Consensus        23 ~C~~~~~~p~~~v~W~k~~~~~~~~~~~~-~~~~----L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          23 ICTAKSKSPAYTLVWTRLHNGKLPSRAMD-FNGI----LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV   88 (89)
T ss_dssp             EEEEEESSSCCEEEEEEGGGBCCCTTEEE-ETTE----EEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEccCCCCCCEEEEecCCceeeccccEe-eceE----EEEecCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            34444 334456666643 3333333222 2233    33889999999999994  44555566666665

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.27  E-value=2.2e-06  Score=49.74  Aligned_cols=68  Identities=18%  Similarity=0.324  Sum_probs=47.2

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCe---e-C-----------CCCcEEE----eCcEEEEecCCCCCCeEE
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNN---N-L-----------PGGEYSY----SGNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~---~-~-----------~~~~~~~----~~~~l~i~~~~~~d~g~y  164 (187)
                      .|..+.+.+|++++|.|.........+.||+...   + +           ...+...    ....|.|.++..+|++.|
T Consensus         6 sP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~Y   85 (106)
T d1a0ql1           6 SPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATY   85 (106)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEE
T ss_pred             cCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeE
Confidence            3455678899999999998666666799998421   1 0           0111111    124699999999999999


Q ss_pred             EEEEecC
Q psy15738        165 LCVANNM  171 (187)
Q Consensus       165 ~C~~~n~  171 (187)
                      .|.+.+.
T Consensus        86 yCa~~~~   92 (106)
T d1a0ql1          86 YCLQYYN   92 (106)
T ss_dssp             EEEECSS
T ss_pred             EEEEeCC
Confidence            9987653

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=3.4e-06  Score=47.58  Aligned_cols=86  Identities=17%  Similarity=0.195  Sum_probs=55.8

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEE-eCcEEEEecCCCCCCeEEEEEEec-C-C
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSY-SGNSLTVRHTNRHSAGIYLCVANN-M-V  172 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n-~-~  172 (187)
                      +|.+...+.   ..+..|+.++|.|.... +...+.++|+|.......... ....+.|.+++..|+|.|.|.-.. . .
T Consensus         4 kPsLsa~P~---~~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~~~~~~   79 (93)
T d1olla2           4 TPTLSVHPG---PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHA   79 (93)
T ss_dssp             CCEEEEESC---SEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEETTE
T ss_pred             CCEEEEeCC---CcccCCCcEEEEECCCC-CCCEEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEeECCCCC
Confidence            455543332   35788999999998643 445788999885432111111 224688999999999999997432 2 2


Q ss_pred             CCcceeeEEEEEE
Q psy15738        173 GSSAAASIALHVL  185 (187)
Q Consensus       173 g~~~s~~~~l~v~  185 (187)
                      -+..|..+.|.|-
T Consensus        80 wS~~SdpLeL~Vt   92 (93)
T d1olla2          80 WSFPSEPVKLLVT   92 (93)
T ss_dssp             ECCCCCCEEEEEE
T ss_pred             cCCCCCCEEEEee
Confidence            3344778887774

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.26  E-value=7.3e-06  Score=48.16  Aligned_cols=70  Identities=20%  Similarity=0.343  Sum_probs=48.2

Q ss_pred             cCCceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC-------CCC-------cEEE------eCcEEEEecCCCCC
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL-------PGG-------EYSY------SGNSLTVRHTNRHS  160 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~-------~~~-------~~~~------~~~~l~i~~~~~~d  160 (187)
                      ..+..+.+.+|+.+.|.|.........+.||+-.  ..+       ...       +...      ....|.|.++..+|
T Consensus         5 Q~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1j8hd1           5 QLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSD   84 (115)
T ss_dssp             CSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGG
T ss_pred             cCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccC
Confidence            3345577899999999999876656679999732  110       000       0110      11369999999999


Q ss_pred             CeEEEEEEecCC
Q psy15738        161 AGIYLCVANNMV  172 (187)
Q Consensus       161 ~g~y~C~~~n~~  172 (187)
                      +|.|.|.+....
T Consensus        85 sa~YyCa~~~~~   96 (115)
T d1j8hd1          85 AAEYFCAVSESP   96 (115)
T ss_dssp             CEEEEEEEESST
T ss_pred             CccceeeecCCC
Confidence            999999997643

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.26  E-value=1.3e-06  Score=50.80  Aligned_cols=67  Identities=18%  Similarity=0.372  Sum_probs=46.7

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC-------------CCCcEEE----eCcEEEEecCCCCCCeEE
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL-------------PGGEYSY----SGNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~-------------~~~~~~~----~~~~l~i~~~~~~d~g~y  164 (187)
                      .|..+.+.+|++++|.|.........+.||+..  ...             ...+...    ....|.|.++..+|+|.|
T Consensus         7 ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   86 (107)
T d1c5cl1           7 SPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADY   86 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             cCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEE
Confidence            344567889999999999876666679999732  210             0001110    124799999999999999


Q ss_pred             EEEEec
Q psy15738        165 LCVANN  170 (187)
Q Consensus       165 ~C~~~n  170 (187)
                      .|.+.+
T Consensus        87 yCa~~~   92 (107)
T d1c5cl1          87 YCLQYA   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEecCc
Confidence            998764

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.26  E-value=1.8e-06  Score=50.07  Aligned_cols=67  Identities=18%  Similarity=0.377  Sum_probs=46.5

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeC--CeeC-------------CCCcEEE----eCcEEEEecCCCCCCeEE
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRK--NNNL-------------PGGEYSY----SGNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~--~~~~-------------~~~~~~~----~~~~l~i~~~~~~d~g~y  164 (187)
                      .|..+.+.+|++++|.|.........+.||+.  |...             ...+...    ....|.|.++..+|+|.|
T Consensus         7 sP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Y   86 (106)
T d1i8ka_           7 SPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDY   86 (106)
T ss_dssp             ECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEE
Confidence            34556788999999999876665667999974  2211             0111111    124699999999999999


Q ss_pred             EEEEec
Q psy15738        165 LCVANN  170 (187)
Q Consensus       165 ~C~~~n  170 (187)
                      .|.+.+
T Consensus        87 yCa~~~   92 (106)
T d1i8ka_          87 YCLQSF   92 (106)
T ss_dssp             EEEECS
T ss_pred             eEecCc
Confidence            998664

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.24  E-value=2.5e-06  Score=49.47  Aligned_cols=68  Identities=15%  Similarity=0.284  Sum_probs=47.4

Q ss_pred             cCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC----------C---CCcEEE----eCcEEEEecCCCCCCeE
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL----------P---GGEYSY----SGNSLTVRHTNRHSAGI  163 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~----------~---~~~~~~----~~~~l~i~~~~~~d~g~  163 (187)
                      ..|..+.+.+|++++|.|...+.....+.||+...  .+          .   ..+...    ....|.|.++..+|++.
T Consensus         5 Q~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   84 (106)
T d1op3k1           5 QSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFAT   84 (106)
T ss_dssp             EECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSE
T ss_pred             CcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCc
Confidence            33556778899999999998766566799997431  10          0   011111    12469999999999999


Q ss_pred             EEEEEec
Q psy15738        164 YLCVANN  170 (187)
Q Consensus       164 y~C~~~n  170 (187)
                      |.|.+..
T Consensus        85 YyCa~~~   91 (106)
T d1op3k1          85 YHCQHYA   91 (106)
T ss_dssp             EEEEEEC
T ss_pred             EeeeeCC
Confidence            9998764

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.24  E-value=3.8e-06  Score=48.79  Aligned_cols=67  Identities=18%  Similarity=0.390  Sum_probs=46.1

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC----------C---CCcEEE--e--CcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL----------P---GGEYSY--S--GNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~----------~---~~~~~~--~--~~~l~i~~~~~~d~g~y~  165 (187)
                      |..+.+.+|++++|.|.........+.||+...  .+          .   ......  .  ...|.|.++..+|+|.|.
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~Yy   87 (108)
T d1jhll_           8 PSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYI   87 (108)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEE
T ss_pred             CCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEE
Confidence            445678899999999998766566799987421  10          0   001111  1  137999999999999999


Q ss_pred             EEEecC
Q psy15738        166 CVANNM  171 (187)
Q Consensus       166 C~~~n~  171 (187)
                      |.+.+.
T Consensus        88 CA~~~~   93 (108)
T d1jhll_          88 CQQHNE   93 (108)
T ss_dssp             EEECSS
T ss_pred             EeeCCC
Confidence            976653

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=1.5e-06  Score=49.59  Aligned_cols=34  Identities=6%  Similarity=-0.131  Sum_probs=24.2

Q ss_pred             cceeEEEEEecccceeEEeec---cceeeEEEEEEEE
Q psy15738         61 YLSYILAMEKEEEERKKKKKR---KKRKKKKKKKEKR   94 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v~   94 (187)
                      ..+.|..++.+|.|.|+|.+.   +...+.++.|+|+
T Consensus        60 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          60 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             eEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEEEE
Confidence            445588999999999999554   2334456777775

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.24  E-value=2.3e-06  Score=49.74  Aligned_cols=67  Identities=22%  Similarity=0.473  Sum_probs=46.7

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-------------CCCcEEE----eCcEEEEecCCCCCCeEE
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-------------PGGEYSY----SGNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-------------~~~~~~~----~~~~l~i~~~~~~d~g~y  164 (187)
                      .|..+.+.+|++++|.|.........+.||+...  .+             ...+...    ....|.|.++..+|+|.|
T Consensus         7 ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~Y   86 (107)
T d1j1pl_           7 SPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMY   86 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEE
Confidence            3455678899999999997665566799997431  11             0111111    124799999999999999


Q ss_pred             EEEEec
Q psy15738        165 LCVANN  170 (187)
Q Consensus       165 ~C~~~n  170 (187)
                      .|.+.+
T Consensus        87 yCa~~~   92 (107)
T d1j1pl_          87 FCQQAN   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEEcCC
Confidence            997664

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.23  E-value=7.3e-07  Score=50.29  Aligned_cols=32  Identities=16%  Similarity=0.049  Sum_probs=23.4

Q ss_pred             eeEEEEEecccceeEEee--ccceeeEEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKK--RKKRKKKKKKKEKR   94 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~   94 (187)
                      +.|..+..+|.|.|+|.+  ..+..+..+.|.|+
T Consensus        57 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          57 LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEeCCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence            447889999999999944  45555666777764

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.23  E-value=2.9e-06  Score=49.24  Aligned_cols=69  Identities=19%  Similarity=0.369  Sum_probs=47.3

Q ss_pred             ecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC-------------CCCcEEE----eCcEEEEecCCCCCCe
Q psy15738        102 VSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL-------------PGGEYSY----SGNSLTVRHTNRHSAG  162 (187)
Q Consensus       102 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~-------------~~~~~~~----~~~~l~i~~~~~~d~g  162 (187)
                      ...|..+.+.+|++++|.|.........+.||+..  ..+             ...+...    ....|.|.++..+|++
T Consensus         5 tQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA   84 (107)
T d1mexl1           5 TQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLA   84 (107)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             EcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecce
Confidence            34455577889999999999765555679999742  110             0111111    1246999999999999


Q ss_pred             EEEEEEec
Q psy15738        163 IYLCVANN  170 (187)
Q Consensus       163 ~y~C~~~n  170 (187)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d1mexl1          85 EYFCQQYN   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             eEEEeECC
Confidence            99998654

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.21  E-value=3e-06  Score=49.37  Aligned_cols=67  Identities=15%  Similarity=0.360  Sum_probs=46.4

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC----------C---CCcEEE----eCcEEEEecCCCCCCeEE
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL----------P---GGEYSY----SGNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~----------~---~~~~~~----~~~~l~i~~~~~~d~g~y  164 (187)
                      .|..+.+.+|+++.|.|...+.....+.||+...  ..          .   ..+...    ....|.|.++..+|++.|
T Consensus         9 sP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~Y   88 (109)
T d1bwwa_           9 SPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATY   88 (109)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceE
Confidence            3445678899999999998766566788997321  10          0   011111    123699999999999999


Q ss_pred             EEEEec
Q psy15738        165 LCVANN  170 (187)
Q Consensus       165 ~C~~~n  170 (187)
                      .|.+..
T Consensus        89 yCA~~~   94 (109)
T d1bwwa_          89 YCQQYQ   94 (109)
T ss_dssp             EEEECS
T ss_pred             EEeecC
Confidence            998764

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.19  E-value=4.6e-06  Score=49.04  Aligned_cols=66  Identities=23%  Similarity=0.453  Sum_probs=45.5

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeC--CeeC-------CCCcE-------EE------eCcEEEEecCCCCCCe
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRK--NNNL-------PGGEY-------SY------SGNSLTVRHTNRHSAG  162 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~--~~~~-------~~~~~-------~~------~~~~l~i~~~~~~d~g  162 (187)
                      +..+.+.+|++++|.|.........+.||+-  +...       .....       ..      ....|.|.++..+|+|
T Consensus         7 ~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg   86 (115)
T d1i9ea_           7 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSA   86 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccc
Confidence            4456789999999999987655667889973  2110       00000       00      1236999999999999


Q ss_pred             EEEEEEec
Q psy15738        163 IYLCVANN  170 (187)
Q Consensus       163 ~y~C~~~n  170 (187)
                      .|.|.+..
T Consensus        87 ~YyCa~~~   94 (115)
T d1i9ea_          87 VYFCAVSG   94 (115)
T ss_dssp             EEEEEEEE
T ss_pred             eecccccC
Confidence            99998764

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.18  E-value=4e-06  Score=48.57  Aligned_cols=64  Identities=20%  Similarity=0.418  Sum_probs=44.9

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-------------CCCcEEE----eCcEEEEecCCCCCCeEEEEE
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-------------PGGEYSY----SGNSLTVRHTNRHSAGIYLCV  167 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-------------~~~~~~~----~~~~l~i~~~~~~d~g~y~C~  167 (187)
                      .+.+.+|++++|.|...+.....+.||+...  ..             ...+...    ....|.|.++..+|+|.|.|.
T Consensus         9 s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   88 (106)
T d1lk3l1           9 ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQ   88 (106)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcccc
Confidence            4678899999999998766666799997421  10             0111111    124799999999999999997


Q ss_pred             Eec
Q psy15738        168 ANN  170 (187)
Q Consensus       168 ~~n  170 (187)
                      +..
T Consensus        89 ~~~   91 (106)
T d1lk3l1          89 QSW   91 (106)
T ss_dssp             ECS
T ss_pred             ccc
Confidence            653

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.18  E-value=3.6e-06  Score=49.08  Aligned_cols=66  Identities=15%  Similarity=0.357  Sum_probs=45.4

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC-------CCC------cEEE------eCcEEEEecCCCCCCeE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL-------PGG------EYSY------SGNSLTVRHTNRHSAGI  163 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~-------~~~------~~~~------~~~~l~i~~~~~~d~g~  163 (187)
                      |..+.+.+|++++|.|.........+.||+..  ...       ...      +...      ....|.|.++..+|+|.
T Consensus         6 P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (110)
T d1u3ha1           6 PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSAT   85 (110)
T ss_dssp             CSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSE
T ss_pred             CCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCcee
Confidence            44567889999999999876555578999742  111       000      0000      12369999999999999


Q ss_pred             EEEEEec
Q psy15738        164 YLCVANN  170 (187)
Q Consensus       164 y~C~~~n  170 (187)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (110)
T d1u3ha1          86 YFCAASA   92 (110)
T ss_dssp             EEECCEE
T ss_pred             EeeeecC
Confidence            9998764

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.18  E-value=3.3e-06  Score=49.20  Aligned_cols=67  Identities=19%  Similarity=0.337  Sum_probs=46.4

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC----------C---CCcEEE----eCcEEEEecCCCCCCeEE
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL----------P---GGEYSY----SGNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~----------~---~~~~~~----~~~~l~i~~~~~~d~g~y  164 (187)
                      .|..+.+.+|++++|.|.........+.||+...  ..          .   ..+...    ....|.|.++..+|+|.|
T Consensus         7 sP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~Y   86 (109)
T d1mqkl_           7 TPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSY   86 (109)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeE
Confidence            3455677889999999998765566799998321  10          0   011111    124699999999999999


Q ss_pred             EEEEec
Q psy15738        165 LCVANN  170 (187)
Q Consensus       165 ~C~~~n  170 (187)
                      .|.+..
T Consensus        87 yCA~~~   92 (109)
T d1mqkl_          87 YCQHHY   92 (109)
T ss_dssp             EEEECS
T ss_pred             EEeeeC
Confidence            998764

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.5e-06  Score=50.68  Aligned_cols=67  Identities=19%  Similarity=0.362  Sum_probs=44.1

Q ss_pred             CceEEEecCCcEEEEeEeccC----C---CCcEEEEeCCeeCC------------------CCcEEE------eCcEEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGN----P---VPNITWTRKNNNLP------------------GGEYSY------SGNSLTV  153 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~----p---~p~~~W~~~~~~~~------------------~~~~~~------~~~~l~i  153 (187)
                      +..+.+.+|.++.|.|.....    .   ...+.|++....-.                  .++...      ...+|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            345678899999999986421    1   12467887643110                  011221      1246999


Q ss_pred             ecCCCCCCeEEEEEEecC
Q psy15738        154 RHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       154 ~~~~~~d~g~y~C~~~n~  171 (187)
                      .++..+|+|.|.|.+...
T Consensus        88 ~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCChHHCEEEEEEEEeC
Confidence            999999999999999754

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.17  E-value=2.6e-07  Score=52.01  Aligned_cols=30  Identities=3%  Similarity=-0.079  Sum_probs=21.0

Q ss_pred             eeEEEEEecccceeEEeeccceeeEEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKKRKKRKKKKKKKEKR   94 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~   94 (187)
                      ..|..+..+|+|.|+|.+...  ..++.|.|.
T Consensus        58 L~I~~~~~~D~G~Y~c~a~n~--~~sa~l~V~   87 (89)
T d1tiua_          58 LILHNCQLGMTGEVSFQAANA--KSAANLKVK   87 (89)
T ss_dssp             EECCSCCSCCCSEECCBCSSC--BCCEEEEEE
T ss_pred             EEEcCCChhcCEEEEEEECce--EEEEEEEEE
Confidence            337788889999999966543  345666664

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.17  E-value=3.3e-06  Score=46.83  Aligned_cols=82  Identities=11%  Similarity=0.020  Sum_probs=48.8

Q ss_pred             CCCCCeeEEEEcCeeeeeeeecCcceEEccCC-CCeeEEEeC-eEeeeccEEEeeccccccceeEEEEEecccceeEEee
Q psy15738          3 ADSRPESTFWIFGKPITRIMFADLAIMFADSR-PESTFWIFG-KLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKK   80 (187)
Q Consensus         3 ~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~-~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~   80 (187)
                      |.|+|.|+-...+..+.....-.+.|...... ....+|+++ ..+...          ....+|..+..+|.|.|+|.+
T Consensus         1 aPpkp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~----------~~~l~i~~v~~~dsG~Y~C~a   70 (85)
T d2fcba1           1 APPKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH----------TQPSYRFKANNNDSGEYTCQT   70 (85)
T ss_dssp             CCCBCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC----------CSSEEEEECCGGGCEEEEEEC
T ss_pred             CCCCCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc----------ccceEEeeccccCCcEEEEEC
Confidence            45788877644443332111111234444333 345666654 443221          223448899999999999988


Q ss_pred             ccceeeEEEEEEEE
Q psy15738         81 RKKRKKKKKKKEKR   94 (187)
Q Consensus        81 ~~~~~~~~~~l~v~   94 (187)
                      .....+..+.|+|.
T Consensus        71 ~ns~~S~~v~l~V~   84 (85)
T d2fcba1          71 GQTSLSDPVHLTVL   84 (85)
T ss_dssp             TTSBCCCCEEEEEE
T ss_pred             CCCcccccEEEEEE
Confidence            87777888888875

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.16  E-value=3.8e-06  Score=48.75  Aligned_cols=67  Identities=18%  Similarity=0.345  Sum_probs=46.3

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-------------CCCcEEE--e--CcEEEEecCCCCCCeEE
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-------------PGGEYSY--S--GNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-------------~~~~~~~--~--~~~l~i~~~~~~d~g~y  164 (187)
                      .|..+.+.+|++++|.|.........+.||+...  .+             ...+...  .  ...|.|.++..+|++.|
T Consensus         7 ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~Y   86 (107)
T d1tjgl1           7 SPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATY   86 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             eCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceE
Confidence            3555678899999999998765566889997431  11             0111111  1  23699999999999999


Q ss_pred             EEEEec
Q psy15738        165 LCVANN  170 (187)
Q Consensus       165 ~C~~~n  170 (187)
                      .|.+.+
T Consensus        87 yCa~~~   92 (107)
T d1tjgl1          87 YCQQLH   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEEECc
Confidence            997654

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.15  E-value=8.1e-06  Score=47.64  Aligned_cols=68  Identities=18%  Similarity=0.366  Sum_probs=47.1

Q ss_pred             cCCceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC-------CC------CcEEE------eCcEEEEecCCCCCC
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL-------PG------GEYSY------SGNSLTVRHTNRHSA  161 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~-------~~------~~~~~------~~~~l~i~~~~~~d~  161 (187)
                      ..+..+.+.+|++++|.|.........+.||+..  ...       ..      .+...      ....|.|.++..+|+
T Consensus         5 Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (111)
T d1bd2d1           5 QNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDS   84 (111)
T ss_dssp             CCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGC
T ss_pred             ccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccccc
Confidence            3355567889999999999776666678898732  111       00      01110      124799999999999


Q ss_pred             eEEEEEEec
Q psy15738        162 GIYLCVANN  170 (187)
Q Consensus       162 g~y~C~~~n  170 (187)
                      |.|.|.+..
T Consensus        85 a~YyCa~~~   93 (111)
T d1bd2d1          85 AVYFCAAME   93 (111)
T ss_dssp             EEEEEEEES
T ss_pred             EEEEeeccC
Confidence            999998874

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.15  E-value=4.5e-06  Score=48.42  Aligned_cols=66  Identities=23%  Similarity=0.416  Sum_probs=46.0

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-------------CCCcEEE----eCcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-------------PGGEYSY----SGNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-------------~~~~~~~----~~~~l~i~~~~~~d~g~y~  165 (187)
                      |..+.+.+|++++|.|.........+.||+...  ..             ...+...    ....|.|.++..+|++.|.
T Consensus         8 P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1d5il1           8 PSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEE
Confidence            445678899999999998666666788997421  10             0111111    1247999999999999999


Q ss_pred             EEEec
Q psy15738        166 CVANN  170 (187)
Q Consensus       166 C~~~n  170 (187)
                      |.+..
T Consensus        88 Ca~~~   92 (107)
T d1d5il1          88 CLQYD   92 (107)
T ss_dssp             EEECS
T ss_pred             eeecc
Confidence            97664

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=1.5e-05  Score=46.69  Aligned_cols=68  Identities=22%  Similarity=0.437  Sum_probs=46.3

Q ss_pred             CceEEEecCCcEEEEeEeccCC-CCcEEEEeCC--e-e-------------CCCCcEEEe------CcEEEEecCCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP-VPNITWTRKN--N-N-------------LPGGEYSYS------GNSLTVRHTNRHSA  161 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p-~p~~~W~~~~--~-~-------------~~~~~~~~~------~~~l~i~~~~~~d~  161 (187)
                      |..+.+.+|+++.|.|...+.. ...+.||+..  . +             ....+....      ...|.|.++..+|+
T Consensus         6 P~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Ds   85 (114)
T d3bp5a1           6 PAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDS   85 (114)
T ss_dssp             SSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCC
Confidence            4567789999999999985543 4468899732  1 1             011122211      13599999999999


Q ss_pred             eEEEEEEecCC
Q psy15738        162 GIYLCVANNMV  172 (187)
Q Consensus       162 g~y~C~~~n~~  172 (187)
                      |.|.|.+....
T Consensus        86 g~YyCa~~~~~   96 (114)
T d3bp5a1          86 GIYLCGAISLH   96 (114)
T ss_dssp             EEEEEEEECSS
T ss_pred             eEEEEEEEeCC
Confidence            99999987544

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=6e-06  Score=46.48  Aligned_cols=73  Identities=5%  Similarity=-0.107  Sum_probs=44.0

Q ss_pred             CCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeecc
Q psy15738          3 ADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRK   82 (187)
Q Consensus         3 ~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~   82 (187)
                      ..|.+.|.|++++..+......+  .....             .+..+..+..   ....+.|.+++.+|+|.|.|.+..
T Consensus        20 ~~p~~~v~W~~~~~~i~~~~~~~--~~~~~-------------~~~~~~~~~~---~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1          20 NVPLKEVLWKKQKDKVAELENSE--FRAFS-------------SFKNRVYLDT---VSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             SSCCSCEEEEETTEEEEEEETTE--EEECG-------------GGTTSEEECT---TTCCEEECSCCGGGCEEEEEECTT
T ss_pred             CCCCcEEEEEEeccccceeeecc--eeeCC-------------CccceEEEcC---CeeEEEEEecChhhCEEEEEEEEC
Confidence            45788999999887765322111  11100             1112222211   122344899999999999998877


Q ss_pred             ceeeEEEEEEE
Q psy15738         83 KRKKKKKKKEK   93 (187)
Q Consensus        83 ~~~~~~~~l~v   93 (187)
                      ...+....|+|
T Consensus        82 ~~~t~~~~l~V   92 (93)
T d1ccza1          82 ITDTMKFFLYV   92 (93)
T ss_dssp             CCSCEEEEEEE
T ss_pred             CCcEEEEEEEE
Confidence            77777777776

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.13  E-value=2.9e-06  Score=48.92  Aligned_cols=65  Identities=20%  Similarity=0.345  Sum_probs=44.8

Q ss_pred             ceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eCC-------------CCcEEE----eCcEEEEecCCCCCCeEEEE
Q psy15738        106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NLP-------------GGEYSY----SGNSLTVRHTNRHSAGIYLC  166 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~~-------------~~~~~~----~~~~l~i~~~~~~d~g~y~C  166 (187)
                      ..+.+.+|++++|.|.........+.||+-..  .+.             ..+...    ....|.|.++..+|+|.|.|
T Consensus         6 ~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   85 (103)
T d8faba1           6 PSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYC   85 (103)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEe
Confidence            35678899999999987665556789997421  100             001110    12469999999999999999


Q ss_pred             EEec
Q psy15738        167 VANN  170 (187)
Q Consensus       167 ~~~n  170 (187)
                      .+..
T Consensus        86 A~~~   89 (103)
T d8faba1          86 QAWD   89 (103)
T ss_dssp             EEEE
T ss_pred             eecC
Confidence            8764

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.6e-06  Score=49.90  Aligned_cols=33  Identities=6%  Similarity=-0.119  Sum_probs=23.4

Q ss_pred             eeEEEEEecccceeEEee--ccceeeEEEEEEEEc
Q psy15738         63 SYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRI   95 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~   95 (187)
                      +.|..++.+|.|.|+|.+  ..+.....+.|+|..
T Consensus        61 L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V~~   95 (101)
T d1iray1          61 LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVE   95 (101)
T ss_dssp             EEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEeccceecCCEEEEEEEECCCCeEEEEEEEEEEe
Confidence            347888899999999944  445555667777753

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=1.7e-05  Score=42.84  Aligned_cols=80  Identities=24%  Similarity=0.407  Sum_probs=56.6

Q ss_pred             CceEEEecCCcEEEEeEeccC-CCCcEEEEe-CCe---eCCCCc--EE-E--e-C---cEEEEecCCCCCCeEEEEEEec
Q psy15738        105 AGKVEVKKGYSVTLECKADGN-PVPNITWTR-KNN---NLPGGE--YS-Y--S-G---NSLTVRHTNRHSAGIYLCVANN  170 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~-p~p~~~W~~-~~~---~~~~~~--~~-~--~-~---~~l~i~~~~~~d~g~y~C~~~n  170 (187)
                      .....+..|+...|.|.+.-- -.|.++|-| +|.   ++..+.  +. .  . +   =.|.+..+-.+|.|.|.|.|.-
T Consensus        10 ~S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf   89 (104)
T d1xaua_          10 NSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNF   89 (104)
T ss_dssp             TEEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             cceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCC
Confidence            345678889999999998543 468999976 443   233221  11 1  1 1   1478888999999999999998


Q ss_pred             CCCCcceeeEEEEE
Q psy15738        171 MVGSSAAASIALHV  184 (187)
Q Consensus       171 ~~g~~~s~~~~l~v  184 (187)
                      ..+...|.++++.|
T Consensus        90 ~s~vieSHSvti~V  103 (104)
T d1xaua_          90 NSQVINSHSVTIHV  103 (104)
T ss_dssp             TTEEEECCCEEEEE
T ss_pred             ChhheecceEEEEe
Confidence            88877777877765

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.13  E-value=2.7e-06  Score=47.92  Aligned_cols=17  Identities=18%  Similarity=0.210  Sum_probs=13.3

Q ss_pred             eEEEEEecccceeEEee
Q psy15738         64 YILAMEKEEEERKKKKK   80 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~   80 (187)
                      .|..+..+|+|.|+|.+
T Consensus        59 ~I~~~~~~D~G~Y~C~a   75 (92)
T d1epfa2          59 QIRGIKKTDEGTYRCEG   75 (92)
T ss_dssp             EETTCCGGGCEEEEEEE
T ss_pred             EECCCCHHhCEEEEEEE
Confidence            37788888889999944

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.4e-06  Score=50.92  Aligned_cols=34  Identities=6%  Similarity=-0.151  Sum_probs=26.8

Q ss_pred             eeEEEEEecccceeEE--eeccceeeEEEEEEEEcC
Q psy15738         63 SYILAMEKEEEERKKK--KKRKKRKKKKKKKEKRIP   96 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c--~~~~~~~~~~~~l~v~~~   96 (187)
                      +.|..++..|.|.|+|  .+..+..+..+.|.|..+
T Consensus        74 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          74 LHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             EEEESCCTTCCEEEEEEEEETTEEEEEEEEEEEESC
T ss_pred             EEEeccCHHHCcEEEEEEEECCCeEEEEEEEEEEec
Confidence            4478899999999999  445677778888888643

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=8.6e-07  Score=51.54  Aligned_cols=32  Identities=6%  Similarity=-0.177  Sum_probs=21.3

Q ss_pred             eeEEEEEecccc-eeEEeeccceeeEEEEEEEE
Q psy15738         63 SYILAMEKEEEE-RKKKKKRKKRKKKKKKKEKR   94 (187)
Q Consensus        63 ~~~~~v~~~d~g-~y~c~~~~~~~~~~~~l~v~   94 (187)
                      +.|..++.+|.| .|+|.+.......+..+.+.
T Consensus        72 L~I~~v~~~D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          72 LNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             EEESSCCGGGGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             EEEeecchHHCCcEEEEEEEeCCCeEEEEEEEE
Confidence            337788899999 59996665555555544443

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.11  E-value=8.3e-06  Score=47.52  Aligned_cols=67  Identities=13%  Similarity=0.334  Sum_probs=44.7

Q ss_pred             CceEEEecCCcEEEEeEeccC-CCCcEEEEeCC--eeCC-------CC------cEEE----eCcEEEEecCCCCCCeEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGN-PVPNITWTRKN--NNLP-------GG------EYSY----SGNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~-p~p~~~W~~~~--~~~~-------~~------~~~~----~~~~l~i~~~~~~d~g~y  164 (187)
                      |..+.+.+|++++|.|...+. ....+.||+..  ..+.       ..      +...    ....|.|.++..+|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            345678899999999987543 34468899732  1110       00      0000    124699999999999999


Q ss_pred             EEEEecC
Q psy15738        165 LCVANNM  171 (187)
Q Consensus       165 ~C~~~n~  171 (187)
                      .|.+...
T Consensus        85 yCa~~~~   91 (110)
T d2esvd1          85 YCIVVRS   91 (110)
T ss_dssp             EEEEEES
T ss_pred             EEEEeCC
Confidence            9988643

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.09  E-value=2.4e-05  Score=44.51  Aligned_cols=75  Identities=16%  Similarity=0.154  Sum_probs=49.4

Q ss_pred             EEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE--EEeC--cEEEEecCCCCCCeEEEEEEecCC----CCcceeeE
Q psy15738        109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY--SYSG--NSLTVRHTNRHSAGIYLCVANNMV----GSSAAASI  180 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~--~~~~--~~l~i~~~~~~d~g~y~C~~~n~~----g~~~s~~~  180 (187)
                      .+..|+.++|.|.... +...+.++|+|........  ....  ....+..+...|+|.|.|.-....    .+..|..+
T Consensus        16 ~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~~~p~~wS~~SdpL   94 (99)
T d1nkra2          16 TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFHDSPYEWSKSSDPL   94 (99)
T ss_dssp             EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEETTEEEEECCCCCCE
T ss_pred             cccCCCeEEEEECCCC-CccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecCCCCCCccCCCCCE
Confidence            6788999999998643 4567899999864332211  1111  235677788889999999755332    23446777


Q ss_pred             EEEE
Q psy15738        181 ALHV  184 (187)
Q Consensus       181 ~l~v  184 (187)
                      .|.|
T Consensus        95 eL~V   98 (99)
T d1nkra2          95 LVSV   98 (99)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7765

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3.1e-06  Score=48.85  Aligned_cols=32  Identities=0%  Similarity=-0.125  Sum_probs=21.4

Q ss_pred             eeEEEEEecccceeEEeec--cc-eeeEEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKKR--KK-RKKKKKKKEKR   94 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~--~~-~~~~~~~l~v~   94 (187)
                      +.|..+..+|.|.|+|.+.  .+ ..+..+.|.|.
T Consensus        67 L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          67 LHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEccccHHHCCeEEEEEEcCCCeEEEEEEEEEEE
Confidence            3366788899999999544  33 23456677664

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.08  E-value=9.9e-06  Score=47.80  Aligned_cols=69  Identities=28%  Similarity=0.481  Sum_probs=47.7

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC------------------CCCcEEE--e---CcEEEEecCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL------------------PGGEYSY--S---GNSLTVRHTNRH  159 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~------------------~~~~~~~--~---~~~l~i~~~~~~  159 (187)
                      |....+.+|++++|.|...+.....+.||+..  ..+                  ...+...  .   ...|.|.++..+
T Consensus         8 P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~   87 (118)
T d2ij0c1           8 PSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPE   87 (118)
T ss_dssp             CSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGG
T ss_pred             CCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccc
Confidence            44567889999999999877666789999832  110                  0111111  1   136999999999


Q ss_pred             CCeEEEEEEecCCC
Q psy15738        160 SAGIYLCVANNMVG  173 (187)
Q Consensus       160 d~g~y~C~~~n~~g  173 (187)
                      |+|.|.|.+....+
T Consensus        88 Dsa~YyCa~~~~~~  101 (118)
T d2ij0c1          88 DSGFYVCSALAGSG  101 (118)
T ss_dssp             GCEEEEEEEECSSC
T ss_pred             cCceEEEEEecCCC
Confidence            99999999875443

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=5.4e-06  Score=47.01  Aligned_cols=35  Identities=14%  Similarity=0.162  Sum_probs=26.4

Q ss_pred             eeEEEEEecccceeEEeecc---ceeeEEEEEEEEcCC
Q psy15738         63 SYILAMEKEEEERKKKKKRK---KRKKKKKKKEKRIPP   97 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~---~~~~~~~~l~v~~~p   97 (187)
                      ..|..++.+|.|.|+|.+..   ...+..+.|+|.++|
T Consensus        58 L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          58 LRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             EEECSCCGGGCEEEEEEEESSSCCEECCCCEEEECCSC
T ss_pred             EEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEEcCC
Confidence            44778899999999995543   334567899998877

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=3.7e-06  Score=46.65  Aligned_cols=29  Identities=0%  Similarity=-0.105  Sum_probs=17.6

Q ss_pred             EEEEEecccceeEEeecc--c-eeeEEEEEEE
Q psy15738         65 ILAMEKEEEERKKKKKRK--K-RKKKKKKKEK   93 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~--~-~~~~~~~l~v   93 (187)
                      +.....+|.|.|+|.+..  + ..+.++.|.|
T Consensus        53 l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          53 LNVTGVTQSTMFSCEAHNLKGLASSRTATVHL   84 (85)
T ss_dssp             EEECCCSSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EecCCccccEEEEEEEEcCCCcEEEEEEEEEE
Confidence            445556788999994442  2 3345566655

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.08  E-value=3.9e-06  Score=46.94  Aligned_cols=30  Identities=3%  Similarity=-0.072  Sum_probs=22.2

Q ss_pred             EEEEEecccceeEEe--eccceeeEEEEEEEE
Q psy15738         65 ILAMEKEEEERKKKK--KRKKRKKKKKKKEKR   94 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~--~~~~~~~~~~~l~v~   94 (187)
                      |..+..+|.|.|+|.  +..+....++.|+|.
T Consensus        57 i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          57 FSKLVLEDSGMYQCVAENKHGTVYASAELTVQ   88 (89)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEeecccCCEEEEEEEEeCCCEEEEEEEEEEE
Confidence            677888899999994  445556667777774

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.07  E-value=1.1e-05  Score=47.35  Aligned_cols=70  Identities=17%  Similarity=0.404  Sum_probs=46.2

Q ss_pred             CCceEEEecCCcEEEEeEeccC-CCCcEEEEeCC--eeC--------CCCc------EEE--e----CcEEEEecCCCCC
Q psy15738        104 GAGKVEVKKGYSVTLECKADGN-PVPNITWTRKN--NNL--------PGGE------YSY--S----GNSLTVRHTNRHS  160 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~-p~p~~~W~~~~--~~~--------~~~~------~~~--~----~~~l~i~~~~~~d  160 (187)
                      .+..+.+.+|++++|.|..... ....+.||+..  ..+        ....      ...  .    ...|.|.++..+|
T Consensus         6 ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (114)
T d2ak4d1           6 AQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVD   85 (114)
T ss_dssp             CCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             cCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccccc
Confidence            3445678999999999986543 34467899832  111        0000      000  0    1369999999999


Q ss_pred             CeEEEEEEecCCC
Q psy15738        161 AGIYLCVANNMVG  173 (187)
Q Consensus       161 ~g~y~C~~~n~~g  173 (187)
                      +|.|.|.+....+
T Consensus        86 sg~YyCa~~~~~~   98 (114)
T d2ak4d1          86 SAVYFCALSGFYN   98 (114)
T ss_dssp             CEEEEEEEECSBT
T ss_pred             CCCceEeCCCCCC
Confidence            9999998876544

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=2.1e-06  Score=50.38  Aligned_cols=35  Identities=9%  Similarity=-0.059  Sum_probs=27.3

Q ss_pred             eEEEEEecccceeEE--eeccceeeEEEEEEEEcCCe
Q psy15738         64 YILAMEKEEEERKKK--KKRKKRKKKKKKKEKRIPPR   98 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c--~~~~~~~~~~~~l~v~~~p~   98 (187)
                      .|..+..+|.|.|+|  .+..+..+..+.|.|..++.
T Consensus        71 ~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~  107 (113)
T d2dava1          71 QIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG  107 (113)
T ss_dssp             EECSCCTTSCEEEEEEEECSSCEEEECCEEEEECCCC
T ss_pred             EEccCCHHHCeEEEEEEEeCCCEEEEEEEEEEEcCCC
Confidence            377888999999999  44566677888999876553

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.07  E-value=4.8e-06  Score=48.40  Aligned_cols=68  Identities=18%  Similarity=0.385  Sum_probs=45.8

Q ss_pred             cCCceEEEecCCcEEEEeEeccC-CCCcEEEEeCC--eeC-------------CCCcEEE----eCcEEEEecCCCCCCe
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGN-PVPNITWTRKN--NNL-------------PGGEYSY----SGNSLTVRHTNRHSAG  162 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~-p~p~~~W~~~~--~~~-------------~~~~~~~----~~~~l~i~~~~~~d~g  162 (187)
                      ..|..+.+.+|++++|.|...+. ....+.||+..  ..+             ...+...    ....|.|.++..+|+|
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa   85 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFA   85 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccE
Confidence            44556778899999999987544 23468899743  110             0011110    1236999999999999


Q ss_pred             EEEEEEec
Q psy15738        163 IYLCVANN  170 (187)
Q Consensus       163 ~y~C~~~n  170 (187)
                      .|.|.+.+
T Consensus        86 ~YyCa~~~   93 (108)
T d2fx7l1          86 VYYCQQYG   93 (108)
T ss_dssp             EEEEEECS
T ss_pred             EEeeecCC
Confidence            99998764

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=3e-07  Score=52.03  Aligned_cols=30  Identities=3%  Similarity=-0.017  Sum_probs=20.6

Q ss_pred             eEEEEEecccc-eeEE--eeccceeeEEEEEEE
Q psy15738         64 YILAMEKEEEE-RKKK--KKRKKRKKKKKKKEK   93 (187)
Q Consensus        64 ~~~~v~~~d~g-~y~c--~~~~~~~~~~~~l~v   93 (187)
                      .|..+..+|.| .|+|  .+..+....++.|.|
T Consensus        59 ~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          59 TLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV   91 (92)
T ss_dssp             EEESCCSTTTTCCEEECCEETTEECCEEECCCC
T ss_pred             EEccccccccceEEEEEEEcCCCEEEEEEEEEE
Confidence            37788899998 6999  444555555555544

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.5e-06  Score=50.24  Aligned_cols=30  Identities=7%  Similarity=-0.052  Sum_probs=19.8

Q ss_pred             eEEEEEecccceeEEee--ccceeeEEEEEEE
Q psy15738         64 YILAMEKEEEERKKKKK--RKKRKKKKKKKEK   93 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v   93 (187)
                      .|.++..+|.|.|+|.+  ..+.....+.|+|
T Consensus        71 ~I~~v~~~D~G~Y~C~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          71 TFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             ECSCCCTTSCSEEEEEEEETTSSCEECCEEEC
T ss_pred             EEecccccceeeEEEEEEECCCCEEEEEEEEE
Confidence            37889999999999944  3444444444443

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.1e-06  Score=48.45  Aligned_cols=19  Identities=5%  Similarity=0.039  Sum_probs=14.5

Q ss_pred             eeEEEEEecccceeEEeec
Q psy15738         63 SYILAMEKEEEERKKKKKR   81 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~   81 (187)
                      +.|.++..+|+|.|+|.+.
T Consensus        52 L~I~~v~~~DsG~Y~C~A~   70 (92)
T d1olza1          52 LLIFNLSEGDSGVYQCLSE   70 (92)
T ss_dssp             EEECSCCGGGCEEEEEEEE
T ss_pred             EEECCCCHHHCcEEEEEEE
Confidence            3478888889999999544

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.05  E-value=9.4e-06  Score=45.85  Aligned_cols=59  Identities=20%  Similarity=0.411  Sum_probs=41.0

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCe--eC------C------CCcEEE------eCcEEEEecCCCCCCeEEEEEEecC
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNN--NL------P------GGEYSY------SGNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~--~~------~------~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      |++++|.|.........+.||+...  ..      .      .++...      ....|.|.++..+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            7889999998776677899997321  10      0      011111      0136999999999999999998754

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=1.8e-06  Score=50.38  Aligned_cols=31  Identities=0%  Similarity=-0.092  Sum_probs=21.1

Q ss_pred             eEEEEEecccceeEEeec--cce--eeEEEEEEEE
Q psy15738         64 YILAMEKEEEERKKKKKR--KKR--KKKKKKKEKR   94 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~--~~~--~~~~~~l~v~   94 (187)
                      .|..++.+|.|.|+|.+.  .+.  .+..+.|+|.
T Consensus        70 ~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~l~V~  104 (110)
T d1f97a2          70 IFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  104 (110)
T ss_dssp             EESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             EECCCCccCCEEEEEEEEECCCcEEEEEEEEEEEE
Confidence            377889999999999554  232  2345666665

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=1e-05  Score=47.35  Aligned_cols=68  Identities=13%  Similarity=0.111  Sum_probs=43.8

Q ss_pred             CceEEEecCCcEEEEeEecc---CC---CCcEEEEeCCeeC----------------CCCcEEE------eCcEEEEecC
Q psy15738        105 AGKVEVKKGYSVTLECKADG---NP---VPNITWTRKNNNL----------------PGGEYSY------SGNSLTVRHT  156 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g---~p---~p~~~W~~~~~~~----------------~~~~~~~------~~~~l~i~~~  156 (187)
                      |..+.+.+|..+.|.|....   .+   ...+.|++.....                ...+...      ...+|.|.++
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   86 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence            44567889999999998642   11   1235677643210                0111111      1246999999


Q ss_pred             CCCCCeEEEEEEecCC
Q psy15738        157 NRHSAGIYLCVANNMV  172 (187)
Q Consensus       157 ~~~d~g~y~C~~~n~~  172 (187)
                      ..+|+|.|.|.+....
T Consensus        87 ~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          87 KPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CGGGCEEEEEEEECC-
T ss_pred             ChhHCEEEEEEEEeCC
Confidence            9999999999997653

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.04  E-value=1.4e-05  Score=46.79  Aligned_cols=68  Identities=22%  Similarity=0.515  Sum_probs=46.0

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC------CCCcE-----E-E------eCcEEEEecCCCCCCeEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL------PGGEY-----S-Y------SGNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~------~~~~~-----~-~------~~~~l~i~~~~~~d~g~y  164 (187)
                      |..+.+.+|+.++|.|...+ ....+.||+..  ..+      .....     . .      ....|.|.++..+|+|.|
T Consensus         8 P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   86 (113)
T d1h5ba_           8 PSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTY   86 (113)
T ss_dssp             CSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEE
T ss_pred             CCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEE
Confidence            44567889999999999765 34578999832  110      00000     0 0      123699999999999999


Q ss_pred             EEEEecCCC
Q psy15738        165 LCVANNMVG  173 (187)
Q Consensus       165 ~C~~~n~~g  173 (187)
                      .|.+....+
T Consensus        87 yCa~~~~~~   95 (113)
T d1h5ba_          87 FCAAEASSG   95 (113)
T ss_dssp             EEEEECSSS
T ss_pred             EEEecCCCC
Confidence            999876544

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.04  E-value=6.7e-06  Score=48.18  Aligned_cols=68  Identities=22%  Similarity=0.381  Sum_probs=46.1

Q ss_pred             CCceEEEecCCcEEEEeEeccC--CCCcEEEEeCC--eeC-----CCCcEEE--e----CcEEEEecCCCCCCeEEEEEE
Q psy15738        104 GAGKVEVKKGYSVTLECKADGN--PVPNITWTRKN--NNL-----PGGEYSY--S----GNSLTVRHTNRHSAGIYLCVA  168 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~--p~p~~~W~~~~--~~~-----~~~~~~~--~----~~~l~i~~~~~~d~g~y~C~~  168 (187)
                      .|..+...+|++++|.|...+.  ....+.||+..  ...     ..++...  .    ...|.|.++..+|+|.|.|.+
T Consensus         6 ~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~   85 (113)
T d1vesa_           6 TPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQA   85 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeee
Confidence            3455678899999999998653  34568899732  211     1112211  1    136999999999999999998


Q ss_pred             ecC
Q psy15738        169 NNM  171 (187)
Q Consensus       169 ~n~  171 (187)
                      ...
T Consensus        86 ~~~   88 (113)
T d1vesa_          86 FYS   88 (113)
T ss_dssp             EEE
T ss_pred             ecc
Confidence            643

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=7.7e-06  Score=47.97  Aligned_cols=66  Identities=20%  Similarity=0.283  Sum_probs=44.3

Q ss_pred             CceEEEecCCcEEEEeEeccCC-CCcEEEEeCCe--eCC-------------------CCcEEE----eCcEEEEecCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP-VPNITWTRKNN--NLP-------------------GGEYSY----SGNSLTVRHTNR  158 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p-~p~~~W~~~~~--~~~-------------------~~~~~~----~~~~l~i~~~~~  158 (187)
                      |....+..|++++|.|...+.. ...+.|++...  .+.                   ..+...    ....|.|.++..
T Consensus         7 P~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~   86 (114)
T d1akjd_           7 PLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRR   86 (114)
T ss_dssp             CCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCG
T ss_pred             CCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCC
Confidence            3345678899999999976543 45689998331  100                   001111    113699999999


Q ss_pred             CCCeEEEEEEec
Q psy15738        159 HSAGIYLCVANN  170 (187)
Q Consensus       159 ~d~g~y~C~~~n  170 (187)
                      +|+|.|.|.+..
T Consensus        87 ~Dsg~YyCa~~~   98 (114)
T d1akjd_          87 ENEGYYFCSALS   98 (114)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCEEEeEeEcC
Confidence            999999999874

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.03  E-value=8.2e-06  Score=47.66  Aligned_cols=68  Identities=24%  Similarity=0.425  Sum_probs=46.4

Q ss_pred             CceEEEecCCcEEEEeEeccC--CCCcEEEEeCC--ee----C-CCCcEEE--e----CcEEEEecCCCCCCeEEEEEEe
Q psy15738        105 AGKVEVKKGYSVTLECKADGN--PVPNITWTRKN--NN----L-PGGEYSY--S----GNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~--p~p~~~W~~~~--~~----~-~~~~~~~--~----~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      |..+...+|++++|.|...+.  ....+.||+..  ..    + ..++...  .    ...|.|.++..+|+|.|.|.+.
T Consensus         6 P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~   85 (112)
T d1sq2n_           6 PRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLG   85 (112)
T ss_dssp             CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEe
Confidence            445677889999999987543  34679999732  11    1 1112211  1    1379999999999999999887


Q ss_pred             cCC
Q psy15738        170 NMV  172 (187)
Q Consensus       170 n~~  172 (187)
                      ...
T Consensus        86 ~~~   88 (112)
T d1sq2n_          86 VAG   88 (112)
T ss_dssp             BTT
T ss_pred             cCC
Confidence            553

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.03  E-value=4.5e-06  Score=47.44  Aligned_cols=34  Identities=6%  Similarity=-0.083  Sum_probs=25.0

Q ss_pred             eeEEEEEecccceeEEee--ccceeeEEEEEEEEcC
Q psy15738         63 SYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIP   96 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~   96 (187)
                      +.|..+...|.|.|+|.+  ..+..+..+.|+|...
T Consensus        59 L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~   94 (97)
T d1koaa1          59 LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRH   94 (97)
T ss_dssp             EEESCCCSGGGSCEEEEEEETTEEEEEEECCEEECS
T ss_pred             EEeCCCceecCEEEEEEEEECCCEEEEEEEEEEeec
Confidence            337788899999999944  4556677778888643

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=7.4e-06  Score=46.93  Aligned_cols=19  Identities=0%  Similarity=-0.053  Sum_probs=15.6

Q ss_pred             eeEEEEEecccceeEEeec
Q psy15738         63 SYILAMEKEEEERKKKKKR   81 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~   81 (187)
                      +.|.++..+|.|.|+|.+.
T Consensus        67 L~I~~v~~~D~G~Y~C~a~   85 (102)
T d1f97a1          67 ITFSSVTRKDNGEYTCMVS   85 (102)
T ss_dssp             EEESCCCGGGCEEEEEEEE
T ss_pred             EEEeECCccCCEEEEEEEE
Confidence            4488999999999999543

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=4.9e-06  Score=46.56  Aligned_cols=36  Identities=11%  Similarity=-0.018  Sum_probs=26.6

Q ss_pred             eeEEEEEecccceeEEeec---cceeeEEEEEEEEcCCe
Q psy15738         63 SYILAMEKEEEERKKKKKR---KKRKKKKKKKEKRIPPR   98 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v~~~p~   98 (187)
                      ..|..++.+|+|.|+|.+.   +...+..+.|+|..+|+
T Consensus        51 l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~~Pr   89 (89)
T d1f2qa2          51 ISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR   89 (89)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             EEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEeCCC
Confidence            3477888899999999543   23346778999998875

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=3.1e-05  Score=44.50  Aligned_cols=68  Identities=18%  Similarity=0.301  Sum_probs=45.6

Q ss_pred             EEEecCCcEEEEeEeccCCC----CcEEEEeCCeeC---CCC----------cEEE---eCcEEEEecCCCCCCeEEEEE
Q psy15738        108 VEVKKGYSVTLECKADGNPV----PNITWTRKNNNL---PGG----------EYSY---SGNSLTVRHTNRHSAGIYLCV  167 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~----p~~~W~~~~~~~---~~~----------~~~~---~~~~l~i~~~~~~d~g~y~C~  167 (187)
                      .+...|+++.|.|.......    ..+.|.+++..+   ..+          +...   .+.+|.|.++..+|.|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~   83 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence            46778999999998653221    246787776432   111          1111   134799999999999999999


Q ss_pred             EecCCCCc
Q psy15738        168 ANNMVGSS  175 (187)
Q Consensus       168 ~~n~~g~~  175 (187)
                      +.+..+..
T Consensus        84 V~~~~~~~   91 (105)
T d1dr9a1          84 VLKYEKDA   91 (105)
T ss_dssp             EEECCTTS
T ss_pred             EEeCCCCC
Confidence            98654433

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1e-05  Score=46.26  Aligned_cols=29  Identities=7%  Similarity=0.026  Sum_probs=19.2

Q ss_pred             EEEEE-ecccceeEEee--ccceeeEEEEEEE
Q psy15738         65 ILAME-KEEEERKKKKK--RKKRKKKKKKKEK   93 (187)
Q Consensus        65 ~~~v~-~~d~g~y~c~~--~~~~~~~~~~l~v   93 (187)
                      |..+. ..|.|.|+|.+  ..+..+..+.|.|
T Consensus        69 I~~v~~~~D~G~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          69 IENLNMEADPGQYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             ECSCCTTTSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EeccccccCCEEEEEEEEECCCEEEEEEEEEE
Confidence            55666 46899999944  4555556666665

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.2e-05  Score=45.52  Aligned_cols=77  Identities=17%  Similarity=0.270  Sum_probs=52.1

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCC----CCcEEEeCcEEEEecCCCCCCeEEEEEEecCC--CCcceeeEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLP----GGEYSYSGNSLTVRHTNRHSAGIYLCVANNMV--GSSAAASIA  181 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~--g~~~s~~~~  181 (187)
                      ..+..|+.++|.|... .+...+..+++|....    ............|.+++..|+|.|.|.-....  .+..|..+.
T Consensus        13 ~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~~S~~Sd~le   91 (96)
T d1ugna1          13 SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLE   91 (96)
T ss_dssp             SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEE
T ss_pred             CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeCCCCCccccCCCEE
Confidence            3578999999999863 3445688888875321    11000123578999999999999999876432  234477777


Q ss_pred             EEEE
Q psy15738        182 LHVL  185 (187)
Q Consensus       182 l~v~  185 (187)
                      |.|-
T Consensus        92 L~Vt   95 (96)
T d1ugna1          92 LVVT   95 (96)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7764

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.01  E-value=1.2e-05  Score=47.25  Aligned_cols=70  Identities=20%  Similarity=0.368  Sum_probs=47.0

Q ss_pred             CCceEEEecCCcEEEEeEeccC-CCCcEEEEeC--CeeC----------------CCCcEEE----e--CcEEEEecCCC
Q psy15738        104 GAGKVEVKKGYSVTLECKADGN-PVPNITWTRK--NNNL----------------PGGEYSY----S--GNSLTVRHTNR  158 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~-p~p~~~W~~~--~~~~----------------~~~~~~~----~--~~~l~i~~~~~  158 (187)
                      .+..+.+.+|++++|.|...+. ....+.||+-  +...                ...+...    .  .-.|.|.++..
T Consensus         6 ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   85 (116)
T d1tvda_           6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRT   85 (116)
T ss_dssp             CSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccc
Confidence            3445678899999999987544 4567899872  2110                0112211    0  12689999999


Q ss_pred             CCCeEEEEEEecCCC
Q psy15738        159 HSAGIYLCVANNMVG  173 (187)
Q Consensus       159 ~d~g~y~C~~~n~~g  173 (187)
                      +|+|.|.|.+....+
T Consensus        86 ~Dsg~YyCa~~~~~~  100 (116)
T d1tvda_          86 EDSATYYCAFTLPPP  100 (116)
T ss_dssp             GGCEEEEEEEECTTT
T ss_pred             cccccceeeEecCCC
Confidence            999999998876544

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=3.8e-05  Score=44.46  Aligned_cols=78  Identities=14%  Similarity=0.227  Sum_probs=46.1

Q ss_pred             EEEecCCcEEEEeEeccCCC---CcEEEE--eCCeeC----------CC---C----cEE--EeCcEEEEecCCCCCCeE
Q psy15738        108 VEVKKGYSVTLECKADGNPV---PNITWT--RKNNNL----------PG---G----EYS--YSGNSLTVRHTNRHSAGI  163 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~---p~~~W~--~~~~~~----------~~---~----~~~--~~~~~l~i~~~~~~d~g~  163 (187)
                      .....|+++.|.|.....+.   ..+.|+  ++....          ..   .    +..  ....+|.|.+++.+|.|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            45678999999998754322   234443  332210          00   0    001  123579999999999999


Q ss_pred             EEEEEecCCCCc----ceeeEEEEEE
Q psy15738        164 YLCVANNMVGSS----AAASIALHVL  185 (187)
Q Consensus       164 y~C~~~n~~g~~----~s~~~~l~v~  185 (187)
                      |.|.+.......    ....+.|.|.
T Consensus        84 Y~C~V~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          84 YQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             EEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             EEEEEEecCCCceEEEEcceEEEEEE
Confidence            999987543322    1345555553

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.97  E-value=2.2e-05  Score=45.76  Aligned_cols=67  Identities=19%  Similarity=0.434  Sum_probs=44.3

Q ss_pred             cCCceEEEecCCcEEEEeEeccC-----CCCcEEEEeCC--eeC----------C---CCcEEE----eCcEEEEecCCC
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGN-----PVPNITWTRKN--NNL----------P---GGEYSY----SGNSLTVRHTNR  158 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~-----p~p~~~W~~~~--~~~----------~---~~~~~~----~~~~l~i~~~~~  158 (187)
                      ..+..+.+.+|++++|.|...+.     ....+.||+..  ...          .   ..+...    ....|.|.++..
T Consensus         6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~   85 (112)
T d1mjul1           6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEA   85 (112)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCG
T ss_pred             ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccc
Confidence            44556778899999999987653     23468898643  110          0   001111    123699999999


Q ss_pred             CCCeEEEEEEe
Q psy15738        159 HSAGIYLCVAN  169 (187)
Q Consensus       159 ~d~g~y~C~~~  169 (187)
                      +|++.|.|...
T Consensus        86 ~DsAvYyCa~~   96 (112)
T d1mjul1          86 EDVGVYYCLQH   96 (112)
T ss_dssp             GGCEEEEEEEC
T ss_pred             cCCceEEEEeC
Confidence            99999999654

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.97  E-value=4.2e-06  Score=48.55  Aligned_cols=66  Identities=18%  Similarity=0.368  Sum_probs=45.0

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC----------C---CCcE--EE--eCcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL----------P---GGEY--SY--SGNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~----------~---~~~~--~~--~~~~l~i~~~~~~d~g~y~  165 (187)
                      |..+.+.+|++++|.|.........+.||+..  ..+          .   ..+.  ..  ....|.|.++..+|+|.|.
T Consensus         8 P~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d3cx5k1           8 PVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYF   87 (107)
T ss_dssp             STTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEE
Confidence            33456788999999999876666679999742  110          0   0000  01  1247999999999999999


Q ss_pred             EEEec
Q psy15738        166 CVANN  170 (187)
Q Consensus       166 C~~~n  170 (187)
                      |.+..
T Consensus        88 Ca~~~   92 (107)
T d3cx5k1          88 CQHHI   92 (107)
T ss_dssp             EEECS
T ss_pred             eeeCC
Confidence            97653

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.96  E-value=1.3e-05  Score=44.71  Aligned_cols=31  Identities=6%  Similarity=-0.116  Sum_probs=22.2

Q ss_pred             EEEEEecccceeEEeec---cceeeEEEEEEEEc
Q psy15738         65 ILAMEKEEEERKKKKKR---KKRKKKKKKKEKRI   95 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v~~   95 (187)
                      |..++.+|+|.|+|.+.   +...+..+.|+|..
T Consensus        55 I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          55 IPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ   88 (89)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ECccceeccceEEEEEEeCCCCeEEeeEEEEEEe
Confidence            77889999999999543   23345667777764

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.96  E-value=1.2e-05  Score=46.68  Aligned_cols=66  Identities=17%  Similarity=0.341  Sum_probs=45.2

Q ss_pred             ceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC----------C---CCcEEE----eCcEEEEecCCCCCCeEEEE
Q psy15738        106 GKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL----------P---GGEYSY----SGNSLTVRHTNRHSAGIYLC  166 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~----------~---~~~~~~----~~~~l~i~~~~~~d~g~y~C  166 (187)
                      +.+.+.+|++++|.|.........+.||+..  ..+          .   ..+...    ....|.|.++..+|++.|.|
T Consensus         8 ~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyC   87 (109)
T d1w72l1           8 PSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYC   87 (109)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEE
Confidence            3567889999999999765445578999743  110          0   111111    12368999999999999999


Q ss_pred             EEecC
Q psy15738        167 VANNM  171 (187)
Q Consensus       167 ~~~n~  171 (187)
                      .+...
T Consensus        88 A~~~~   92 (109)
T d1w72l1          88 QVWDS   92 (109)
T ss_dssp             EEEET
T ss_pred             EecCC
Confidence            98754

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.96  E-value=2e-05  Score=45.97  Aligned_cols=69  Identities=19%  Similarity=0.355  Sum_probs=46.3

Q ss_pred             CceEEEecCCcEEEEeEeccCC---CCcEEEEeCCe--eC----------C---CCcEE--E--eCcEEEEecCCCCCCe
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP---VPNITWTRKNN--NL----------P---GGEYS--Y--SGNSLTVRHTNRHSAG  162 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p---~p~~~W~~~~~--~~----------~---~~~~~--~--~~~~l~i~~~~~~d~g  162 (187)
                      |..+.+.+|++++|.|...+..   ...+.||+...  .+          .   ..+..  .  ....|.|.++..+|++
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            4457788999999999976542   24588997431  10          0   00111  0  1246999999999999


Q ss_pred             EEEEEEecCCC
Q psy15738        163 IYLCVANNMVG  173 (187)
Q Consensus       163 ~y~C~~~n~~g  173 (187)
                      .|.|.+.+..+
T Consensus        87 ~YyCa~~~~~~   97 (112)
T d1lgva1          87 DYYCSSYDGSS   97 (112)
T ss_dssp             EEEEEEECSSS
T ss_pred             EEEEeeecCCC
Confidence            99998875443

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.95  E-value=7.5e-06  Score=45.65  Aligned_cols=32  Identities=9%  Similarity=-0.033  Sum_probs=22.3

Q ss_pred             EEEEEecccceeEEeecc---ceeeEEEEEEEEcC
Q psy15738         65 ILAMEKEEEERKKKKKRK---KRKKKKKKKEKRIP   96 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~---~~~~~~~~l~v~~~   96 (187)
                      |..++.+|+|.|+|.+..   ...+..+.|+|..|
T Consensus        53 i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          53 IPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             ETTCCGGGCEEEEEEEEETTEEEECCCEEEEECCC
T ss_pred             cCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEeCC
Confidence            667888999999994432   22356678888765

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.95  E-value=5.1e-05  Score=44.42  Aligned_cols=67  Identities=19%  Similarity=0.523  Sum_probs=45.4

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-------CCC------cEEE------eCcEEEEecCCCCCCeE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-------PGG------EYSY------SGNSLTVRHTNRHSAGI  163 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-------~~~------~~~~------~~~~l~i~~~~~~d~g~  163 (187)
                      |..+.+.+|+++.|.|...+. ...+.||+-..  .+       ...      +...      ....|.|.++..+|+|.
T Consensus         7 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGL   85 (115)
T ss_dssp             CSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceee
Confidence            445678899999999997653 45789998321  10       000      0000      12469999999999999


Q ss_pred             EEEEEecCC
Q psy15738        164 YLCVANNMV  172 (187)
Q Consensus       164 y~C~~~n~~  172 (187)
                      |.|.+....
T Consensus        86 YyCa~~~~~   94 (115)
T d1ogad1          86 YLCAGAGSQ   94 (115)
T ss_dssp             EEEEEECTT
T ss_pred             EcccccCCC
Confidence            999887543

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.5e-05  Score=46.57  Aligned_cols=65  Identities=15%  Similarity=0.298  Sum_probs=42.6

Q ss_pred             EEEecCCcEEEEeEeccC--CCCcEEEEeCCe--eC------C------C----CcEEE----eC--cEEEEecCCCCCC
Q psy15738        108 VEVKKGYSVTLECKADGN--PVPNITWTRKNN--NL------P------G----GEYSY----SG--NSLTVRHTNRHSA  161 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~--p~p~~~W~~~~~--~~------~------~----~~~~~----~~--~~l~i~~~~~~d~  161 (187)
                      ..+.+|++++|.|...+.  ....+.|++...  .+      .      .    ++...    ..  -.|.|.++..+|+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            456789999999987543  344688997321  10      0      0    01111    11  2589999999999


Q ss_pred             eEEEEEEecCC
Q psy15738        162 GIYLCVANNMV  172 (187)
Q Consensus       162 g~y~C~~~n~~  172 (187)
                      |.|.|.+....
T Consensus        89 g~Y~Cav~~~~   99 (113)
T d1smoa_          89 GLYQCVIYQPP   99 (113)
T ss_dssp             EEEEEEECCTT
T ss_pred             ceEEEEEECCC
Confidence            99999886543

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.94  E-value=3.1e-05  Score=45.16  Aligned_cols=67  Identities=18%  Similarity=0.311  Sum_probs=45.0

Q ss_pred             CceEEEecCCcEEEEeEeccCC-CCcEEEEeCC--eeCC------C-----CcEEE------eCcEEEEecCCCCCCeEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP-VPNITWTRKN--NNLP------G-----GEYSY------SGNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p-~p~~~W~~~~--~~~~------~-----~~~~~------~~~~l~i~~~~~~d~g~y  164 (187)
                      |..+.+.+|++++|.|...+.. ...+.||+..  ..+.      .     .....      ....|.|.++..+|+|.|
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y   84 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVY   84 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeE
Confidence            4456788999999999976544 3458999842  1110      0     00000      123699999999999999


Q ss_pred             EEEEecC
Q psy15738        165 LCVANNM  171 (187)
Q Consensus       165 ~C~~~n~  171 (187)
                      .|.+...
T Consensus        85 yCa~~~~   91 (112)
T d1kgcd1          85 YCILPLA   91 (112)
T ss_dssp             EEECCCC
T ss_pred             eeeEecC
Confidence            9987643

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.94  E-value=6.6e-05  Score=42.38  Aligned_cols=85  Identities=18%  Similarity=0.223  Sum_probs=54.8

Q ss_pred             CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc---EEE---eCcEEEEecCCCCCCeEEEEEEe
Q psy15738         96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---YSY---SGNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus        96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~---~~~---~~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      +|.+...+.   ..+..|..++|.|.... ....+.++|+|.......   ...   ......|.+++..|+|.|.|.-.
T Consensus         2 KPsLsa~P~---~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~   77 (96)
T d1nkra1           2 KPSLLAHPG---PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS   77 (96)
T ss_dssp             CCEEEEESC---SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEeeCC---CccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEE
Confidence            344543332   36789999999998642 345788888875321111   011   12458899999999999999865


Q ss_pred             cC----CCCcceeeEEEEE
Q psy15738        170 NM----VGSSAAASIALHV  184 (187)
Q Consensus       170 n~----~g~~~s~~~~l~v  184 (187)
                      ..    ..+..|..+.|.|
T Consensus        78 ~~~~p~~wS~pSdpLeL~V   96 (96)
T d1nkra1          78 VTHSPYQVSAPSDPLDIVI   96 (96)
T ss_dssp             BTTBTTCCCCCCCCEEEEE
T ss_pred             cCCCCCcccCCCCCEEEEC
Confidence            43    2344477777765

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=2.8e-05  Score=44.23  Aligned_cols=62  Identities=18%  Similarity=0.245  Sum_probs=40.8

Q ss_pred             ecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEEE----eCc---EEEEecCCCCCCeEEEEEEecCC
Q psy15738        111 KKGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYSY----SGN---SLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~----~~~---~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      ..|+.++|.|.+.|..+.  .++|.++|..+.......    ..+   ......+...+...|+|.+....
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDS   86 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCC
Confidence            457888999999997443  689999998775543211    111   12222344556678999999754

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.93  E-value=2.4e-05  Score=45.80  Aligned_cols=70  Identities=19%  Similarity=0.423  Sum_probs=46.3

Q ss_pred             CCceEEEecCCcEEEEeEeccC-CCCcEEEEeCC--eeC---------C-C----CcEEE--e----CcEEEEecCCCCC
Q psy15738        104 GAGKVEVKKGYSVTLECKADGN-PVPNITWTRKN--NNL---------P-G----GEYSY--S----GNSLTVRHTNRHS  160 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~-p~p~~~W~~~~--~~~---------~-~----~~~~~--~----~~~l~i~~~~~~d  160 (187)
                      .+..+.+.+|++++|.|..... ....+.||+..  ..+         . .    ++...  .    ...|.|.++..+|
T Consensus         5 ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1fo0a_           5 TQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIED   84 (115)
T ss_dssp             CCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             cCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccc
Confidence            3456778999999999987543 34458899732  110         0 0    01111  1    1359999999999


Q ss_pred             CeEEEEEEecCCC
Q psy15738        161 AGIYLCVANNMVG  173 (187)
Q Consensus       161 ~g~y~C~~~n~~g  173 (187)
                      +|.|.|.+....+
T Consensus        85 sa~YyCa~~~~~~   97 (115)
T d1fo0a_          85 SAVYFCAMRGDYG   97 (115)
T ss_dssp             CEEEEEEEECCCT
T ss_pred             cccccceeecCCC
Confidence            9999999875543

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.93  E-value=1.7e-05  Score=45.09  Aligned_cols=67  Identities=13%  Similarity=0.072  Sum_probs=39.8

Q ss_pred             CeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEee--ccce
Q psy15738          7 PESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKK--RKKR   84 (187)
Q Consensus         7 p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~--~~~~   84 (187)
                      ..|.|++++..+.....+. .          ..      .+..+..+..++.+.    |.+++.+|+|.|+|..  ..+.
T Consensus        27 ~~I~W~~~~~~i~~~~~~~-~----------~~------~~~~~~~~~~ngSL~----I~nl~~~DsG~Y~c~v~~~~g~   85 (98)
T d1hnga1          27 DEVRWERGSTLVAEFKRKM-K----------PF------LKSGAFEILANGDLK----IKNLTRDDSGTYNVTVYSTNGT   85 (98)
T ss_dssp             EEEEEEETTEEEEEEETTS-C----------CE------ESSTTEEECTTSCEE----ESSCCGGGCEEEEEEEEETTCC
T ss_pred             heeeeeccccceeEEccCC-c----------cc------cCCCeEEECCCccEE----EeCCCHHHCEEEEEEEEeCCCC
Confidence            4688988877654322211 0          00      223344444445555    9999999999999933  3333


Q ss_pred             --eeEEEEEEEE
Q psy15738         85 --KKKKKKKEKR   94 (187)
Q Consensus        85 --~~~~~~l~v~   94 (187)
                        .+.++.|.|+
T Consensus        86 ~~~~~~~~L~V~   97 (98)
T d1hnga1          86 RILNKALDLRIL   97 (98)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             EEEEEEEEEEEE
Confidence              3567777775

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.92  E-value=2.4e-05  Score=45.72  Aligned_cols=64  Identities=20%  Similarity=0.405  Sum_probs=44.6

Q ss_pred             eEEEecCCcEEEEeEeccCC--CCcEEEEeCCeeC------------C---CCcEEE----eCcEEEEecCCCCCCeEEE
Q psy15738        107 KVEVKKGYSVTLECKADGNP--VPNITWTRKNNNL------------P---GGEYSY----SGNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~~~~------------~---~~~~~~----~~~~l~i~~~~~~d~g~y~  165 (187)
                      .+.+.+|++++|.|...+.-  ...+.||+...--            .   ..+...    ....|.|.++..+|++.|.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence            56788999999999976543  4578999743210            0   011111    1247999999999999999


Q ss_pred             EEEec
Q psy15738        166 CVANN  170 (187)
Q Consensus       166 C~~~n  170 (187)
                      |.+..
T Consensus        89 CA~~~   93 (114)
T d2rhea_          89 CAAWN   93 (114)
T ss_dssp             EEEEE
T ss_pred             EeecC
Confidence            98864

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.91  E-value=3.6e-06  Score=49.21  Aligned_cols=31  Identities=10%  Similarity=0.083  Sum_probs=20.9

Q ss_pred             eEEEEEecccc---eeEEeeccceeeEEEEEEEE
Q psy15738         64 YILAMEKEEEE---RKKKKKRKKRKKKKKKKEKR   94 (187)
Q Consensus        64 ~~~~v~~~d~g---~y~c~~~~~~~~~~~~l~v~   94 (187)
                      .|.+++.+|.|   .|.|.+.....+..+.+.+.
T Consensus        66 ~i~~v~~~D~gd~g~Y~C~A~N~~g~~~~~~~~~   99 (111)
T d1biha2          66 YFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEY   99 (111)
T ss_dssp             EEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEE
T ss_pred             EEeeeEeeccCCceEEEEEEEeCCCCceEEEEEE
Confidence            38899999877   69996665544444444443

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.90  E-value=3.6e-05  Score=44.68  Aligned_cols=69  Identities=13%  Similarity=0.311  Sum_probs=46.6

Q ss_pred             cCCceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC-------CC------CcEEE------eCcEEEEecCCCCCC
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL-------PG------GEYSY------SGNSLTVRHTNRHSA  161 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~-------~~------~~~~~------~~~~l~i~~~~~~d~  161 (187)
                      ..+..+.+.+|++++|.|.........+.||+..  ..+       ..      .+...      ....|.|.++..+|+
T Consensus         5 Q~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Ds   84 (110)
T d1ac6a_           5 QTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDS   84 (110)
T ss_dssp             ECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGC
T ss_pred             eCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCC
Confidence            3345567889999999998765555578999842  110       00      01111      124689999999999


Q ss_pred             eEEEEEEecC
Q psy15738        162 GIYLCVANNM  171 (187)
Q Consensus       162 g~y~C~~~n~  171 (187)
                      |.|.|.+...
T Consensus        85 a~YyCA~~~~   94 (110)
T d1ac6a_          85 AVYYCALSGG   94 (110)
T ss_dssp             EEEEEEEEET
T ss_pred             cccceeecCC
Confidence            9999988653

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.89  E-value=5.3e-05  Score=44.24  Aligned_cols=67  Identities=25%  Similarity=0.442  Sum_probs=45.4

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-------CCC---------cEEE-----eCcEEEEecCCCCC
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-------PGG---------EYSY-----SGNSLTVRHTNRHS  160 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-------~~~---------~~~~-----~~~~l~i~~~~~~d  160 (187)
                      .|..+.+.+|++++|.|... .....+.||+...  .+       ...         ....     ....|.|.++..+|
T Consensus         5 sP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (114)
T d1ogae1           5 SPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNP   83 (114)
T ss_dssp             SCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCC
T ss_pred             cCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCC
Confidence            34556788999999999975 3455789997431  00       000         0110     12369999999999


Q ss_pred             CeEEEEEEecC
Q psy15738        161 AGIYLCVANNM  171 (187)
Q Consensus       161 ~g~y~C~~~n~  171 (187)
                      ++.|.|.+...
T Consensus        84 Sa~YyCa~~~~   94 (114)
T d1ogae1          84 TAFYLCASSSR   94 (114)
T ss_dssp             CEEEEEEEESS
T ss_pred             ceeEEEeeccC
Confidence            99999987654

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.88  E-value=2.2e-05  Score=45.71  Aligned_cols=66  Identities=18%  Similarity=0.357  Sum_probs=43.5

Q ss_pred             CceEEEecCCcEEEEeEeccC----CCCcEEEEeC--CeeCC-------------CCcEEE----eCcEEEEecCCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGN----PVPNITWTRK--NNNLP-------------GGEYSY----SGNSLTVRHTNRHSA  161 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~----p~p~~~W~~~--~~~~~-------------~~~~~~----~~~~l~i~~~~~~d~  161 (187)
                      |..+.+.+|++++|.|.....    ....+.||+.  |..+.             ..+...    ....|.|.++..+|+
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   87 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV   87 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccC
Confidence            445667889999999986432    2234889974  22110             001111    124799999999999


Q ss_pred             eEEEEEEec
Q psy15738        162 GIYLCVANN  170 (187)
Q Consensus       162 g~y~C~~~n  170 (187)
                      |.|.|.+.+
T Consensus        88 a~YyCa~~~   96 (111)
T d1j05a_          88 ATYYCQQTN   96 (111)
T ss_dssp             EEEEEEECS
T ss_pred             ccEEEeecC
Confidence            999998764

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2.5e-05  Score=44.57  Aligned_cols=63  Identities=17%  Similarity=0.226  Sum_probs=41.6

Q ss_pred             ecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEE---E-eCc---EEEEecCCCCCCeEEEEEEecCCC
Q psy15738        111 KKGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYS---Y-SGN---SLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~---~-~~~---~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      ..|+...|.|.+.|..++  .+.|.+||..+......   . ..+   ......+...+.+.|.|.+....-
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl   88 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTL   88 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTTC
T ss_pred             cCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeCCC
Confidence            568888999999997444  68999999887543221   1 111   122233445567799999997643

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2.8e-06  Score=48.95  Aligned_cols=18  Identities=6%  Similarity=0.038  Sum_probs=14.4

Q ss_pred             eEEEEEecccceeEEeec
Q psy15738         64 YILAMEKEEEERKKKKKR   81 (187)
Q Consensus        64 ~~~~v~~~d~g~y~c~~~   81 (187)
                      .|..+..+|.|.|+|.+.
T Consensus        69 ~I~~v~~~D~G~Y~C~a~   86 (104)
T d1nbqa2          69 VFDPLSASDTGEYSCEAR   86 (104)
T ss_dssp             EESSCCGGGCCCEEEEEE
T ss_pred             EECCCCcccCcEEEEEEE
Confidence            377888999999999544

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=8.3e-05  Score=41.87  Aligned_cols=61  Identities=13%  Similarity=0.299  Sum_probs=42.1

Q ss_pred             cCCcEEEEeEecc-CCCCcEEEEeCCeeCCCCcEEE----------eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        112 KGYSVTLECKADG-NPVPNITWTRKNNNLPGGEYSY----------SGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       112 ~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      .++.+.|.|.+.| .|.+.+.|++++..+.......          ..+.|.+.   ..+...|.|.+....-..
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~   86 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRV   86 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCE
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCC
Confidence            4677899999987 5888999999998765432211          12345544   345679999999865443

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.86  E-value=3.1e-05  Score=45.07  Aligned_cols=66  Identities=15%  Similarity=0.277  Sum_probs=44.7

Q ss_pred             ceEEEecCCcEEEEeEeccCC--CCcEEEEeCCe--eC-------------CCCcEEE----eCcEEEEecCCCCCCeEE
Q psy15738        106 GKVEVKKGYSVTLECKADGNP--VPNITWTRKNN--NL-------------PGGEYSY----SGNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       106 ~~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~~--~~-------------~~~~~~~----~~~~l~i~~~~~~d~g~y  164 (187)
                      +.+.+.+|++++|.|...+.-  ...+.||+...  .+             ...+...    ....|.|.++..+|+|.|
T Consensus         8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Y   87 (111)
T d1rzfl1           8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADY   87 (111)
T ss_dssp             SEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             cceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcce
Confidence            357788999999999875532  34589997421  10             0011111    124799999999999999


Q ss_pred             EEEEecC
Q psy15738        165 LCVANNM  171 (187)
Q Consensus       165 ~C~~~n~  171 (187)
                      .|.+...
T Consensus        88 yCA~~~~   94 (111)
T d1rzfl1          88 YCGTWDS   94 (111)
T ss_dssp             EEEEEET
T ss_pred             EEeecCC
Confidence            9987653

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.86  E-value=3.1e-05  Score=44.97  Aligned_cols=65  Identities=23%  Similarity=0.465  Sum_probs=44.1

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC--------CC--------CcEEE-----eCcEEEEecCCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL--------PG--------GEYSY-----SGNSLTVRHTNRHSA  161 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~--------~~--------~~~~~-----~~~~l~i~~~~~~d~  161 (187)
                      |....+.+|++++|.|...+ ....+.||+..  ..+        ..        .....     ....|.|.++..+|+
T Consensus         8 P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   86 (110)
T d2aq2a1           8 PRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQT   86 (110)
T ss_dssp             CSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhC
Confidence            44567789999999998754 34678999832  110        00        01100     124688999999999


Q ss_pred             eEEEEEEec
Q psy15738        162 GIYLCVANN  170 (187)
Q Consensus       162 g~y~C~~~n  170 (187)
                      |.|.|.+..
T Consensus        87 a~YyCa~~~   95 (110)
T d2aq2a1          87 SVYFCASGG   95 (110)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEeeCC
Confidence            999998764

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.86  E-value=2.6e-05  Score=44.81  Aligned_cols=67  Identities=21%  Similarity=0.375  Sum_probs=44.5

Q ss_pred             cCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCC---------------CCcEEE----eCcEEEEecCCCCCCeE
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLP---------------GGEYSY----SGNSLTVRHTNRHSAGI  163 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~---------------~~~~~~----~~~~l~i~~~~~~d~g~  163 (187)
                      ..|..+.+.+|++++|.|.... ....+.||+....-.               ......    ....|.|.++..+|+|.
T Consensus         5 QsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   83 (104)
T d1yqvl1           5 QSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAAT   83 (104)
T ss_dssp             EESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCe
Confidence            3355567889999999998643 344688997431100               011110    12469999999999999


Q ss_pred             EEEEEec
Q psy15738        164 YLCVANN  170 (187)
Q Consensus       164 y~C~~~n  170 (187)
                      |.|.+..
T Consensus        84 YyCa~~~   90 (104)
T d1yqvl1          84 YYCQQWG   90 (104)
T ss_dssp             EEEEECS
T ss_pred             EEEEecC
Confidence            9997653

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.85  E-value=1.7e-05  Score=46.74  Aligned_cols=66  Identities=23%  Similarity=0.362  Sum_probs=44.9

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-------------CCCcEE--Ee--CcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-------------PGGEYS--YS--GNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-------------~~~~~~--~~--~~~l~i~~~~~~d~g~y~  165 (187)
                      |..+.+.+|++++|.|...+.-...+.||+...  ..             ...+..  ..  ...|.|.++..+|+|.|.
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYy   87 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYF   87 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEE
Confidence            344567889999999997665556789997431  10             001111  11  136999999999999999


Q ss_pred             EEEec
Q psy15738        166 CVANN  170 (187)
Q Consensus       166 C~~~n  170 (187)
                      |.+..
T Consensus        88 Ca~~~   92 (119)
T d1f3rb2          88 CYQYN   92 (119)
T ss_dssp             EEEES
T ss_pred             eeccC
Confidence            98764

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.84  E-value=4.9e-05  Score=44.17  Aligned_cols=68  Identities=16%  Similarity=0.338  Sum_probs=44.6

Q ss_pred             CCceEEEecCCcEEEEeEeccC----CCCcEEEEeCC--eeC-------------CCCcEEE----eCcEEEEecCCCCC
Q psy15738        104 GAGKVEVKKGYSVTLECKADGN----PVPNITWTRKN--NNL-------------PGGEYSY----SGNSLTVRHTNRHS  160 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~----p~p~~~W~~~~--~~~-------------~~~~~~~----~~~~l~i~~~~~~d  160 (187)
                      .|..+.+.+|++++|.|...+.    ....+.||+..  ...             ...+...    ....|.|.++..+|
T Consensus         7 sP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~D   86 (111)
T d2gsia1           7 SPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEED   86 (111)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccC
Confidence            3455678899999999987532    12348899842  111             0111111    12469999999999


Q ss_pred             CeEEEEEEecC
Q psy15738        161 AGIYLCVANNM  171 (187)
Q Consensus       161 ~g~y~C~~~n~  171 (187)
                      ++.|.|.+...
T Consensus        87 sA~YyCa~~~~   97 (111)
T d2gsia1          87 AATYYCSHIRE   97 (111)
T ss_dssp             CEEEEEEECSS
T ss_pred             CceEEEEECCC
Confidence            99999986643

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.82  E-value=8.4e-05  Score=43.20  Aligned_cols=65  Identities=20%  Similarity=0.432  Sum_probs=43.8

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC-----------------CCCcEEE-----eCcEEEEecCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL-----------------PGGEYSY-----SGNSLTVRHTNRHS  160 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~-----------------~~~~~~~-----~~~~l~i~~~~~~d  160 (187)
                      |..+.+.+|++++|.|...+ ....+.||+..  ..+                 ...+...     ....|.|.++..+|
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (112)
T d1kgce1           6 PRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQED   84 (112)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCC
Confidence            44567789999999998543 34578898832  110                 0111111     12469999999999


Q ss_pred             CeEEEEEEec
Q psy15738        161 AGIYLCVANN  170 (187)
Q Consensus       161 ~g~y~C~~~n  170 (187)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (112)
T d1kgce1          85 SAVYLCASSL   94 (112)
T ss_dssp             CEEEEEEEES
T ss_pred             CEEEEEeeeC
Confidence            9999998864

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.81  E-value=6.4e-05  Score=42.76  Aligned_cols=63  Identities=27%  Similarity=0.335  Sum_probs=40.5

Q ss_pred             EecCCcEEEEeEeccCCC--CcEEEEeCCeeCCCCcEEE-----eCc---EEEEecCCCCCCeEEEEEEecCC
Q psy15738        110 VKKGYSVTLECKADGNPV--PNITWTRKNNNLPGGEYSY-----SGN---SLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~-----~~~---~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      +..|+..+|.|.+.|.-+  ..+.|+++|..+..+....     ..+   ......+...+...|.|.+....
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   86 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHWG   86 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEECC
Confidence            346788899999999744  4689999998775432211     111   11222334456678999999754

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.81  E-value=4e-05  Score=44.58  Aligned_cols=67  Identities=16%  Similarity=0.333  Sum_probs=45.3

Q ss_pred             CceEEEecCCcEEEEeEeccCC--CCcEEEEeCC--eeC-------------CCCcEEE------eCcEEEEecCCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP--VPNITWTRKN--NNL-------------PGGEYSY------SGNSLTVRHTNRHSA  161 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~--~~~-------------~~~~~~~------~~~~l~i~~~~~~d~  161 (187)
                      |..+.+.+|++++|.|...+..  ...+.|++..  ..+             ...+...      ....|.|.++..+|+
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   86 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccC
Confidence            4457788999999999986643  2358898742  110             0111111      123799999999999


Q ss_pred             eEEEEEEecC
Q psy15738        162 GIYLCVANNM  171 (187)
Q Consensus       162 g~y~C~~~n~  171 (187)
                      +.|.|...+.
T Consensus        87 a~YyCA~~~~   96 (111)
T d1cd0a_          87 ADYYCQSYDA   96 (111)
T ss_dssp             EEEEEEEEET
T ss_pred             cEEEEeeccC
Confidence            9999987653

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.80  E-value=0.00012  Score=42.52  Aligned_cols=66  Identities=21%  Similarity=0.418  Sum_probs=44.6

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeC--CeeCC----------------CCcEEE-----eCcEEEEecCCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRK--NNNLP----------------GGEYSY-----SGNSLTVRHTNRHSA  161 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~--~~~~~----------------~~~~~~-----~~~~l~i~~~~~~d~  161 (187)
                      |..+.+.+|++++|.|...+ ....+.||+.  +..+.                ..+...     ....|.|.++..+|+
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (113)
T d2ntsp1           6 PRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDS   84 (113)
T ss_dssp             CSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccc
Confidence            44567889999999998654 3457899982  22110                011111     123699999999999


Q ss_pred             eEEEEEEecC
Q psy15738        162 GIYLCVANNM  171 (187)
Q Consensus       162 g~y~C~~~n~  171 (187)
                      +.|.|.+...
T Consensus        85 a~YyCA~~~~   94 (113)
T d2ntsp1          85 ALYLCASSLA   94 (113)
T ss_dssp             EEEEEEEESS
T ss_pred             eeeeeeeeCC
Confidence            9999988754

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.6e-05  Score=44.34  Aligned_cols=65  Identities=6%  Similarity=-0.147  Sum_probs=38.6

Q ss_pred             ceEEccCCCCeeEEEeC-eEeeeccEEEeeccccccceeEEEEEecccceeEE--eeccceeeEEEEEEEE
Q psy15738         27 AIMFADSRPESTFWIFG-KLITSCSYIILATSLLHYLSYILAMEKEEEERKKK--KKRKKRKKKKKKKEKR   94 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c--~~~~~~~~~~~~l~v~   94 (187)
                      .|.+.+.+.+...|+.+ ..........   ........|..+..+|.|.|+|  .+..+..+.++.|+|+
T Consensus        22 ~C~~~g~p~p~i~W~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          22 TCSTTGCESPFFSWRTQIDSPLNGKVTN---EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY   89 (90)
T ss_dssp             EEEEESCSSCEEEEEETTCCCCSSEEEE---ETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEeccCCCCceEEEEecCccceeeeeee---ecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence            45556666667777643 2222221111   1112234477899999999999  4456666777777775

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.00028  Score=39.83  Aligned_cols=62  Identities=18%  Similarity=0.213  Sum_probs=40.5

Q ss_pred             EEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEE-------eCcEEEEecCCCCCCeEEEEEEecC
Q psy15738        109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSY-------SGNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      .+..|+.++|.|.... ....+..+|+|..........       ......|.+++..|+|.|.|.-...
T Consensus        14 ~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          14 VVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             EEETTCCEEEEEECSS-CCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             ccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcC
Confidence            5789999999998542 345677888876533221110       1135889999999999999987543

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.79  E-value=8.6e-05  Score=43.24  Aligned_cols=66  Identities=17%  Similarity=0.395  Sum_probs=43.5

Q ss_pred             CceEEEecCCcEEEEeEeccC------CCCcEEEEeCC--eeC-------------CCCcEEE----eCcEEEEecCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGN------PVPNITWTRKN--NNL-------------PGGEYSY----SGNSLTVRHTNRH  159 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~------p~p~~~W~~~~--~~~-------------~~~~~~~----~~~~l~i~~~~~~  159 (187)
                      |..+.+.+|++++|.|...+.      ....+.||+..  ..+             .......    ....|.|.++..+
T Consensus         8 P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~   87 (113)
T d1q9ra1           8 PSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAE   87 (113)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccC
Confidence            455678899999999986542      12348899742  110             0111111    1236999999999


Q ss_pred             CCeEEEEEEec
Q psy15738        160 SAGIYLCVANN  170 (187)
Q Consensus       160 d~g~y~C~~~n  170 (187)
                      |+|.|.|.+..
T Consensus        88 Dsa~YyCA~~~   98 (113)
T d1q9ra1          88 DLAVYYCKQSY   98 (113)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCeEEEecccC
Confidence            99999998764

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.78  E-value=4.8e-05  Score=44.29  Aligned_cols=68  Identities=13%  Similarity=0.363  Sum_probs=44.2

Q ss_pred             cCCceEEEecCCcEEEEeEeccCC-----CCcEEEEeCC--eeC----------C---CCcEEE----eCcEEEEecCCC
Q psy15738        103 SGAGKVEVKKGYSVTLECKADGNP-----VPNITWTRKN--NNL----------P---GGEYSY----SGNSLTVRHTNR  158 (187)
Q Consensus       103 ~~~~~~~~~~g~~~~l~C~~~g~p-----~p~~~W~~~~--~~~----------~---~~~~~~----~~~~l~i~~~~~  158 (187)
                      ..|..+.+.+|++++|.|...+..     ...+.||+..  ..+          .   ..+...    ....|.|.++..
T Consensus         6 QsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~   85 (112)
T d1ncwl1           6 QSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEA   85 (112)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             CcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcccc
Confidence            334567789999999999865432     2358898642  110          0   111111    123699999999


Q ss_pred             CCCeEEEEEEec
Q psy15738        159 HSAGIYLCVANN  170 (187)
Q Consensus       159 ~d~g~y~C~~~n  170 (187)
                      +|++.|.|...+
T Consensus        86 eDsAvYYC~~~~   97 (112)
T d1ncwl1          86 EDLGVYYCWQGT   97 (112)
T ss_dssp             GGCEEEEEEECS
T ss_pred             CcCEeEEEEcCC
Confidence            999999996544

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.77  E-value=1.4e-05  Score=44.09  Aligned_cols=31  Identities=10%  Similarity=0.019  Sum_probs=25.6

Q ss_pred             eeEEEEEecccceeEEeeccceeeEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKKRKKRKKKKKKKEK   93 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v   93 (187)
                      ..|..+..+|+|.|+|.+.....+..+.|+|
T Consensus        54 l~i~~~~~~d~G~Y~C~a~~s~~S~~v~L~V   84 (84)
T d1fnla1          54 YFIDAATVNDSGEYRCQTNLSTLSDPVQLEV   84 (84)
T ss_dssp             EEESSCCGGGCEEEEEECSSSCCCCCEEEEE
T ss_pred             eEecCCcccCCEEEEEEccCCCccccEEEEC
Confidence            3478899999999999888777777777776

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.76  E-value=7.4e-05  Score=43.53  Aligned_cols=67  Identities=15%  Similarity=0.338  Sum_probs=44.3

Q ss_pred             CCceEEEecCCcEEEEeEeccC-----CCCcEEEEeCC--eeC-------------CCCcEEE----eCcEEEEecCCCC
Q psy15738        104 GAGKVEVKKGYSVTLECKADGN-----PVPNITWTRKN--NNL-------------PGGEYSY----SGNSLTVRHTNRH  159 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~-----p~p~~~W~~~~--~~~-------------~~~~~~~----~~~~l~i~~~~~~  159 (187)
                      .|..+.+.+|++++|.|...+.     ....+.||+..  ...             ...+...    ....|.|.++..+
T Consensus         8 ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~   87 (113)
T d1n4xl_           8 TPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAE   87 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGG
T ss_pred             cCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcc
Confidence            3445678899999999997543     22468898742  110             0111111    1247999999999


Q ss_pred             CCeEEEEEEec
Q psy15738        160 SAGIYLCVANN  170 (187)
Q Consensus       160 d~g~y~C~~~n  170 (187)
                      |++.|.|...+
T Consensus        88 DsavYyCa~~~   98 (113)
T d1n4xl_          88 DLGIYYCFQGS   98 (113)
T ss_dssp             GCEEEEEEECS
T ss_pred             cCEEEEEEECC
Confidence            99999997654

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.73  E-value=0.00018  Score=40.67  Aligned_cols=62  Identities=19%  Similarity=0.273  Sum_probs=39.1

Q ss_pred             cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEE----E-eC---cEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYS----Y-SG---NSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~----~-~~---~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      .++...|.|.+.|..++  .+.|+++|..+..+...    . ..   ..+....+...+...|+|.+....-
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl   88 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSV   88 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTTC
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECCC
Confidence            35566899999997544  68999999877544221    1 11   1233345566778899999998643

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.71  E-value=2.9e-06  Score=48.22  Aligned_cols=66  Identities=20%  Similarity=0.533  Sum_probs=44.2

Q ss_pred             EEEecCCcEEEEeEeccCCCCcEEEEeC--CeeC-------------CCCcEEE------eCcEEEEecCCCCCCeEEEE
Q psy15738        108 VEVKKGYSVTLECKADGNPVPNITWTRK--NNNL-------------PGGEYSY------SGNSLTVRHTNRHSAGIYLC  166 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~--~~~~-------------~~~~~~~------~~~~l~i~~~~~~d~g~y~C  166 (187)
                      +.+.+|++++|.|.... ....+.||+.  +..+             ..++...      ....|.|.++..+|+|.|.|
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            45778999999998654 3456889973  2211             0111111      11369999999999999999


Q ss_pred             EEecCCCC
Q psy15738        167 VANNMVGS  174 (187)
Q Consensus       167 ~~~n~~g~  174 (187)
                      .+....|.
T Consensus        82 A~~~~~g~   89 (96)
T d1ymmd1          82 ATDTTSGT   89 (96)
T ss_dssp             EEEETTSC
T ss_pred             eEecCCCC
Confidence            98766553

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.71  E-value=6.4e-05  Score=43.71  Aligned_cols=68  Identities=21%  Similarity=0.385  Sum_probs=45.4

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-------CCC---------cEEE-----eCcEEEEecCCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-------PGG---------EYSY-----SGNSLTVRHTNRHSA  161 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-------~~~---------~~~~-----~~~~l~i~~~~~~d~  161 (187)
                      |..+.+.+|++++|.|.... ....+.||+...  .+       ...         ....     ....|.|.++..+|+
T Consensus         5 P~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds   83 (112)
T d2cdeb1           5 PRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHT   83 (112)
T ss_dssp             CSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTC
T ss_pred             CCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccccc
Confidence            44567889999999998653 345789997432  10       000         0000     124689999999999


Q ss_pred             eEEEEEEecCCC
Q psy15738        162 GIYLCVANNMVG  173 (187)
Q Consensus       162 g~y~C~~~n~~g  173 (187)
                      |.|.|.+....+
T Consensus        84 a~YyCA~~~~~~   95 (112)
T d2cdeb1          84 SQYLCASSENIG   95 (112)
T ss_dssp             SEEEEEEECSSS
T ss_pred             ccEEEEEecCCC
Confidence            999998875543

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.70  E-value=0.00011  Score=43.25  Aligned_cols=68  Identities=24%  Similarity=0.437  Sum_probs=46.2

Q ss_pred             CCceEEEecCCcEEEEeEeccCC--CCcEEEEeC--CeeC-------------CCCcEEE------eCcEEEEecCCCCC
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNP--VPNITWTRK--NNNL-------------PGGEYSY------SGNSLTVRHTNRHS  160 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~--~~~~-------------~~~~~~~------~~~~l~i~~~~~~d  160 (187)
                      .++...+.+|++++|.|...+..  ...+.||+.  |..+             ...+...      ....|.|.++..+|
T Consensus         7 ~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~D   86 (120)
T d1hxma1           7 EHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERD   86 (120)
T ss_dssp             SCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGG
T ss_pred             cCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccC
Confidence            34456788999999999987653  346889873  2111             0112211      12479999999999


Q ss_pred             CeEEEEEEecC
Q psy15738        161 AGIYLCVANNM  171 (187)
Q Consensus       161 ~g~y~C~~~n~  171 (187)
                      +|.|.|.....
T Consensus        87 sa~YyCA~~~~   97 (120)
T d1hxma1          87 EGSYYCACDTL   97 (120)
T ss_dssp             CEEEEEEEECC
T ss_pred             CceeecCcccC
Confidence            99999987654

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.0001  Score=39.13  Aligned_cols=57  Identities=18%  Similarity=0.297  Sum_probs=37.9

Q ss_pred             ecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEe
Q psy15738        111 KKGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      ..|..+.|.|.....+.+  .-.|.|+|..+...+.......+.+..  .+++|.|.|.-.
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEECG--GGCCEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCCceEEEEec--CCCCceEEEEEc
Confidence            457788899998765443  467999999886654221112334433  567999999954

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.70  E-value=9.2e-05  Score=42.96  Aligned_cols=65  Identities=23%  Similarity=0.540  Sum_probs=43.8

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC-----------------CCCcEEEe-----CcEEEEecCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL-----------------PGGEYSYS-----GNSLTVRHTNRHS  160 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~-----------------~~~~~~~~-----~~~l~i~~~~~~d  160 (187)
                      |..+.+.+|++++|.|...+ ....+.||+..  ..+                 ...+....     ...|.|.++..+|
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~D   84 (111)
T d2esve1           6 PSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELED   84 (111)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCC
Confidence            44567889999999998544 34578898732  110                 01111111     1469999999999


Q ss_pred             CeEEEEEEec
Q psy15738        161 AGIYLCVANN  170 (187)
Q Consensus       161 ~g~y~C~~~n  170 (187)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (111)
T d2esve1          85 SGVYFCASSQ   94 (111)
T ss_dssp             CEEEEEEEES
T ss_pred             CceEEEeeeC
Confidence            9999998664

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=4.2e-05  Score=42.03  Aligned_cols=61  Identities=8%  Similarity=-0.127  Sum_probs=36.1

Q ss_pred             ceEEccCCCCeeEEEeC-eEeeeccEEEeeccccccceeEEEEEecccceeEE--eeccceeeEEEEEEEEcCC
Q psy15738         27 AIMFADSRPESTFWIFG-KLITSCSYIILATSLLHYLSYILAMEKEEEERKKK--KKRKKRKKKKKKKEKRIPP   97 (187)
Q Consensus        27 ~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c--~~~~~~~~~~~~l~v~~~p   97 (187)
                      .|...+.+.+...|+++ ..+...      ...+    .|..+..+|+|.|+|  .+..+.....+.|.|...|
T Consensus        20 ~C~~~g~p~P~i~W~~~~~~~~~~------~~~l----~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~~~   83 (84)
T d2nxyb2          20 TLESPPGSSPSVQCRSPRGKNIQG------GKTL----SVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ   83 (84)
T ss_dssp             EEECCTTCCCEEEEECTTCCEEEE------SSEE----EESSCCGGGCEEEEEEEEETTEEEEEEEEECEECCC
T ss_pred             EEEeEcCCchheEEEeecccceee------eeee----eeeecccccccEEEEEEEeCCCEEEEEEEEEEEecC
Confidence            35555666666777643 222111      1112    266788899999999  4455666667777776544

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=8.9e-05  Score=43.52  Aligned_cols=64  Identities=17%  Similarity=0.233  Sum_probs=42.4

Q ss_pred             eEEEecCCcEEEEeEeccCCCC---cEEEEeCCeeCCCCcEE-----------------------EeCcEEEEecCCCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVP---NITWTRKNNNLPGGEYS-----------------------YSGNSLTVRHTNRHS  160 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p---~~~W~~~~~~~~~~~~~-----------------------~~~~~l~i~~~~~~d  160 (187)
                      .+.+.+|++++|.|.......+   .+.|++.... ......                       .....|.|.++..+|
T Consensus         8 ~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   86 (118)
T d1i8lc_           8 VVLASSRGIASFVCEYASPGKATEVRVTVLRQADS-QVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMD   86 (118)
T ss_dssp             EEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTT-CCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGG
T ss_pred             EEEEeCCCcEEEEEEccccccccceeEEEEEECCC-CeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCC
Confidence            3456788999999997543322   4889975321 000000                       012369999999999


Q ss_pred             CeEEEEEEecC
Q psy15738        161 AGIYLCVANNM  171 (187)
Q Consensus       161 ~g~y~C~~~n~  171 (187)
                      +|.|.|.+...
T Consensus        87 sa~YyCa~~~~   97 (118)
T d1i8lc_          87 TGLYICKVELM   97 (118)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CEEEEEeEecc
Confidence            99999988753

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.68  E-value=0.00026  Score=41.02  Aligned_cols=65  Identities=22%  Similarity=0.410  Sum_probs=43.6

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeCC----------------CCcEEE-----eCcEEEEecCCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNLP----------------GGEYSY-----SGNSLTVRHTNRHSA  161 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~~----------------~~~~~~-----~~~~l~i~~~~~~d~  161 (187)
                      |....+.+|++++|.|.... -...+.||+..  ..+.                ..+...     ....|.|.++..+|+
T Consensus         6 P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (112)
T d2bnub1           6 PKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQT   84 (112)
T ss_dssp             CSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHC
Confidence            44566889999999998753 34578998732  1100                000010     123699999999999


Q ss_pred             eEEEEEEec
Q psy15738        162 GIYLCVANN  170 (187)
Q Consensus       162 g~y~C~~~n  170 (187)
                      +.|.|.+..
T Consensus        85 avYyCA~~~   93 (112)
T d2bnub1          85 SVYFCASSY   93 (112)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEeecC
Confidence            999998764

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.66  E-value=0.00028  Score=40.94  Aligned_cols=67  Identities=25%  Similarity=0.432  Sum_probs=44.5

Q ss_pred             CCceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC-------C---------CCcEEE-----eCcEEEEecCCCCC
Q psy15738        104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL-------P---------GGEYSY-----SGNSLTVRHTNRHS  160 (187)
Q Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~-------~---------~~~~~~-----~~~~l~i~~~~~~d  160 (187)
                      .|..+.+.+|+++.|.|.... ....+.||+..  ..+       .         ......     ....|.|.++..+|
T Consensus         6 sP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   84 (113)
T d1j8he1           6 SSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQ   84 (113)
T ss_dssp             SCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGG
T ss_pred             cCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCC
Confidence            344567789999999998643 34578898732  110       0         011111     12469999999999


Q ss_pred             CeEEEEEEecC
Q psy15738        161 AGIYLCVANNM  171 (187)
Q Consensus       161 ~g~y~C~~~n~  171 (187)
                      +|.|.|.+...
T Consensus        85 sa~YyCa~~~~   95 (113)
T d1j8he1          85 TSMYLCASSST   95 (113)
T ss_dssp             CEEEEEEEECT
T ss_pred             cccEEeeEccC
Confidence            99999998753

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=6.5e-05  Score=41.03  Aligned_cols=32  Identities=13%  Similarity=0.023  Sum_probs=27.4

Q ss_pred             eeEEEEEecccceeEEeeccceeeEEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKKRKKRKKKKKKKEKR   94 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~   94 (187)
                      ..|..++.+|.|.|+|.+.....+..+.|+|.
T Consensus        50 l~i~~v~~~d~G~Y~C~a~~s~~S~~v~l~V~   81 (82)
T d1f2qa1          50 LNIVNAKFEDSGEYKCQHQQVNESEPVYLEVF   81 (82)
T ss_dssp             EEECSCCGGGCEEEEEECTTSSCCCCEEEEEE
T ss_pred             eEECCCChhhCCcEEEEecCCCCcccEEEEEE
Confidence            34789999999999998888888888888875

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.65  E-value=5.8e-05  Score=43.75  Aligned_cols=64  Identities=20%  Similarity=0.435  Sum_probs=43.2

Q ss_pred             eEEEecCCcEEEEeEeccCCC---CcEEEEeCC--eeC----------C---CCcEEE----eCcEEEEecCCCCCCeEE
Q psy15738        107 KVEVKKGYSVTLECKADGNPV---PNITWTRKN--NNL----------P---GGEYSY----SGNSLTVRHTNRHSAGIY  164 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~---p~~~W~~~~--~~~----------~---~~~~~~----~~~~l~i~~~~~~d~g~y  164 (187)
                      .+.+.+|++++|.|...+...   -.+.||+..  ..+          .   ..+...    ....|.|.++..+|+|.|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence            466789999999999865432   238898732  111          0   111111    124799999999999999


Q ss_pred             EEEEec
Q psy15738        165 LCVANN  170 (187)
Q Consensus       165 ~C~~~n  170 (187)
                      .|.+..
T Consensus        89 yCa~~~   94 (110)
T d1oaql_          89 FCALWY   94 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEccc
Confidence            999774

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.65  E-value=0.00023  Score=42.06  Aligned_cols=65  Identities=18%  Similarity=0.459  Sum_probs=44.1

Q ss_pred             eEEEecCCcEEEEeEeccCC--CCcEEEEeCC--eeC------------------CCCcEEE--e----CcEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNP--VPNITWTRKN--NNL------------------PGGEYSY--S----GNSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~--~~~------------------~~~~~~~--~----~~~l~i~~~~~  158 (187)
                      .+...+|++++|.|.+.|..  ...+.||+..  ..+                  ..++...  .    ...|.|.++..
T Consensus        10 s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~   89 (123)
T d1hxmb1          10 SSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEK   89 (123)
T ss_dssp             EEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCG
T ss_pred             eEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccccc
Confidence            46678899999999987753  3468898732  110                  1112221  1    13599999999


Q ss_pred             CCCeEEEEEEecC
Q psy15738        159 HSAGIYLCVANNM  171 (187)
Q Consensus       159 ~d~g~y~C~~~n~  171 (187)
                      +|++.|.|.....
T Consensus        90 ~Dsa~YyCA~~~~  102 (123)
T d1hxmb1          90 QDIATYYCALWEA  102 (123)
T ss_dssp             GGCEEEEEEEEEE
T ss_pred             ccCcEEEEeeeCC
Confidence            9999999987643

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.63  E-value=0.00012  Score=42.58  Aligned_cols=67  Identities=15%  Similarity=0.344  Sum_probs=44.6

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCCee--C-------C---------CCcEE---E--eCcEEEEecCCCCCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNN--L-------P---------GGEYS---Y--SGNSLTVRHTNRHSA  161 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~--~-------~---------~~~~~---~--~~~~l~i~~~~~~d~  161 (187)
                      |..+.+.+|+++.|.|..... ...+.||+...-  +       .         ..+..   .  ....|.|.++..+|+
T Consensus         8 P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   86 (113)
T d1nfdb1           8 PRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDS   86 (113)
T ss_dssp             CSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGC
T ss_pred             CCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCc
Confidence            445678899999999986443 457899975321  0       0         00110   0  123688999999999


Q ss_pred             eEEEEEEecCC
Q psy15738        162 GIYLCVANNMV  172 (187)
Q Consensus       162 g~y~C~~~n~~  172 (187)
                      |.|.|.+....
T Consensus        87 a~YyCa~~~~~   97 (113)
T d1nfdb1          87 AMYFCASSLRW   97 (113)
T ss_dssp             EEECEEEESSS
T ss_pred             eeEEEEeecCC
Confidence            99999876543

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.63  E-value=3.4e-05  Score=44.64  Aligned_cols=66  Identities=21%  Similarity=0.460  Sum_probs=44.5

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC----------C---CCcEEE----eCcEEEEecCCCCCCeEEE
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL----------P---GGEYSY----SGNSLTVRHTNRHSAGIYL  165 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~----------~---~~~~~~----~~~~l~i~~~~~~d~g~y~  165 (187)
                      |..+.+.+|++++|.|.........+.||+-.  ..+          .   ..+...    ....|.|.++..+|+|.|.
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Yy   85 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEE
Confidence            34567889999999998754444568898732  110          0   011111    1247999999999999999


Q ss_pred             EEEec
Q psy15738        166 CVANN  170 (187)
Q Consensus       166 C~~~n  170 (187)
                      |.+..
T Consensus        86 CA~~~   90 (108)
T d1nfde1          86 CLSSY   90 (108)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            98764

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.62  E-value=2.6e-05  Score=44.92  Aligned_cols=19  Identities=16%  Similarity=0.031  Sum_probs=14.8

Q ss_pred             eeEEEEEecccceeEEeec
Q psy15738         63 SYILAMEKEEEERKKKKKR   81 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~   81 (187)
                      +.|..++.+|.|.|+|.+.
T Consensus        63 L~I~~v~~~D~G~Y~C~a~   81 (105)
T d1cs6a2          63 LYIAKTEASDLGNYSCFAT   81 (105)
T ss_dssp             EEESSCCGGGCEEEEEEEE
T ss_pred             EeecccccccCcEEEEEEE
Confidence            3478888899999999544

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.59  E-value=0.00017  Score=42.46  Aligned_cols=67  Identities=18%  Similarity=0.288  Sum_probs=43.9

Q ss_pred             CceEEEecCCcEEEEeEeccCC--CCcEEEEeCC--eeC-------C-C---------CcEEEe------CcEEEEecCC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNP--VPNITWTRKN--NNL-------P-G---------GEYSYS------GNSLTVRHTN  157 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~--~~~-------~-~---------~~~~~~------~~~l~i~~~~  157 (187)
                      +..+...+|++++|.|.+.+..  ...+.||+..  ..+       . .         .+....      ...|.|.++.
T Consensus         8 ~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~   87 (120)
T d1ypzf1           8 EISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE   87 (120)
T ss_dssp             CSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC
T ss_pred             CCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccc
Confidence            3456677899999999876542  3458898732  110       0 0         111111      1359999999


Q ss_pred             CCCCeEEEEEEecC
Q psy15738        158 RHSAGIYLCVANNM  171 (187)
Q Consensus       158 ~~d~g~y~C~~~n~  171 (187)
                      .+|++.|.|.....
T Consensus        88 ~~Dsa~YyCA~~~~  101 (120)
T d1ypzf1          88 EEDEAIYYCSYGEG  101 (120)
T ss_dssp             GGGCSEEEEEECCT
T ss_pred             cccceeEEEEEcCC
Confidence            99999999987643

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.59  E-value=0.00033  Score=40.40  Aligned_cols=78  Identities=17%  Similarity=0.357  Sum_probs=48.8

Q ss_pred             eEEEecCCcEEEEeEeccC--CCCcEEEEeCC--eeC--------CC--------CcEEEe----C--cEEEEecCCCCC
Q psy15738        107 KVEVKKGYSVTLECKADGN--PVPNITWTRKN--NNL--------PG--------GEYSYS----G--NSLTVRHTNRHS  160 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~--p~p~~~W~~~~--~~~--------~~--------~~~~~~----~--~~l~i~~~~~~d  160 (187)
                      ...+.+|++++|.|...+.  ..-.+.|++..  ...        ..        ++....    .  -.|+|.++..+|
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            4567899999999998654  33457898742  210        00        111111    1  248999999999


Q ss_pred             CeEEEEEEecCCCCcc--eeeEEEEE
Q psy15738        161 AGIYLCVANNMVGSSA--AASIALHV  184 (187)
Q Consensus       161 ~g~y~C~~~n~~g~~~--s~~~~l~v  184 (187)
                      +|.|.|..........  -..+.|.|
T Consensus        84 sa~YyCa~~~~~~~~~~~~~~~~L~V  109 (110)
T d1u9ka_          84 SGLYRCVIYHPPNDPVVLFHPVRLVV  109 (110)
T ss_dssp             CEEEEEEEECTTSCCEECSCCEEEEE
T ss_pred             CEEEEEEEeCCCCCCEEEECCEEEEE
Confidence            9999999865544321  13456655

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00064  Score=37.97  Aligned_cols=63  Identities=17%  Similarity=0.170  Sum_probs=41.1

Q ss_pred             ecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEEE----eCc---EEEEecCCCCCCeEEEEEEecCCC
Q psy15738        111 KKGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYSY----SGN---SLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~----~~~---~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      ..|+.+.|.|.+.|..+.  .+.|.+||..+.......    ..+   ......+...+...|.|.+....-
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~sl   84 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSL   84 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETTC
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECCC
Confidence            357889999999997444  688999998775442211    011   222333445566789999997643

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=9.7e-05  Score=43.28  Aligned_cols=64  Identities=17%  Similarity=0.267  Sum_probs=41.6

Q ss_pred             eEEEecCCcEEEEeEeccCCCC---cEEEEeCC--eeC-------C--------CCcEE---E--eCcEEEEecCCCCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVP---NITWTRKN--NNL-------P--------GGEYS---Y--SGNSLTVRHTNRHSA  161 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p---~~~W~~~~--~~~-------~--------~~~~~---~--~~~~l~i~~~~~~d~  161 (187)
                      .+.+..|+++.|.|.......+   .+.|++..  ...       .        .....   .  ....|.|.++..+|+
T Consensus         8 ~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   87 (117)
T d1dqta_           8 VVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDT   87 (117)
T ss_dssp             EEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             EEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccC
Confidence            4556789999999997543222   37799842  110       0        00000   0  124799999999999


Q ss_pred             eEEEEEEec
Q psy15738        162 GIYLCVANN  170 (187)
Q Consensus       162 g~y~C~~~n  170 (187)
                      |.|.|.+..
T Consensus        88 a~YyCa~~~   96 (117)
T d1dqta_          88 GLYLCKVEL   96 (117)
T ss_dssp             EEEEEEEEE
T ss_pred             EeEEEEEec
Confidence            999998874

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.54  E-value=5.5e-05  Score=42.39  Aligned_cols=19  Identities=11%  Similarity=-0.003  Sum_probs=14.8

Q ss_pred             eeEEEEEecccceeEEeec
Q psy15738         63 SYILAMEKEEEERKKKKKR   81 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~   81 (187)
                      +.|..+..+|.|.|+|.+.
T Consensus        60 L~i~~v~~~D~G~Y~C~a~   78 (94)
T d1biha1          60 LVFLRPQASDEGHYQCFAE   78 (94)
T ss_dssp             EEESSCCGGGCEEEEEEEE
T ss_pred             EEEeccChhcCeEEEEEEE
Confidence            4477888899999999444

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00011  Score=41.17  Aligned_cols=61  Identities=15%  Similarity=0.235  Sum_probs=38.7

Q ss_pred             cCCcEEEEeEeccC-CC-CcEEEEeCCeeCCCCc-----EEEe-C---cEEEEecCCCCCCeEEEEEEecCC
Q psy15738        112 KGYSVTLECKADGN-PV-PNITWTRKNNNLPGGE-----YSYS-G---NSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       112 ~g~~~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~-----~~~~-~---~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      .+..++|.|.+.|. |. ..+.|++||..+....     .... .   .......+...+...|+|.+....
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~s   85 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPG   85 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            45678999999996 43 3789999998764321     1111 1   112222344456678999999863

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=5.8e-05  Score=42.36  Aligned_cols=30  Identities=0%  Similarity=-0.104  Sum_probs=20.3

Q ss_pred             eeEEEEEecccceeEEeeccceeeEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKKRKKRKKKKKKKEK   93 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v   93 (187)
                      ..|.++..+|+|.|+|.+.+.. ..++.|.|
T Consensus        62 L~I~~v~~~D~G~Y~C~a~n~~-~~t~~l~V   91 (93)
T d1n26a1          62 LLLRSVQLHDSGNYSCYRAGRP-AGTVHLLV   91 (93)
T ss_dssp             EEECSCCGGGCEEEEEESSSSC-SCEEEEEE
T ss_pred             EEECCCChhcCEEEEEEECCcc-ccEEEEEE
Confidence            3388999999999999666432 23444444

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.48  E-value=0.0003  Score=39.68  Aligned_cols=63  Identities=17%  Similarity=0.214  Sum_probs=39.7

Q ss_pred             ecCCcEEEEeEeccCCC--CcEEEEeCCeeCCCCcE----EE-eCc---EEEEecCCCCCCeEEEEEEecCCC
Q psy15738        111 KKGYSVTLECKADGNPV--PNITWTRKNNNLPGGEY----SY-SGN---SLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~----~~-~~~---~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      ..++.+.|.|.+.|..+  ..++|.+||..+..+..    .. ..+   ......+...+...|.|.+.....
T Consensus        15 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~sl   87 (98)
T d1hdmb1          15 NTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGA   87 (98)
T ss_dssp             SSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTTS
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCCC
Confidence            45678899999999744  46899999987643311    11 111   111123445556689999998644

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.47  E-value=0.00032  Score=39.82  Aligned_cols=59  Identities=22%  Similarity=0.271  Sum_probs=38.5

Q ss_pred             ecCCcEEEEeEeccCCC--CcEEEEeCCeeCCCCcEE-----E------eCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        111 KKGYSVTLECKADGNPV--PNITWTRKNNNLPGGEYS-----Y------SGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~-----~------~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      ..|+..+|.|.+.|.-+  ..+.|.+||..+..+...     .      ..+.|.+   ...+...|+|.+....
T Consensus        17 ~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~s   88 (101)
T d1fnga1          17 NLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTF---LPSTDDFYDCEVDHWG   88 (101)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEE---CCCTTCCEEEEEECTT
T ss_pred             cCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEE---cCCCCCEEEEEEEECC
Confidence            45677889999999743  378999999876543211     0      1123443   3344568999999764

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.45  E-value=0.00065  Score=39.26  Aligned_cols=66  Identities=20%  Similarity=0.429  Sum_probs=45.2

Q ss_pred             CceEEEecCCcEEEEeEeccCCCCcEEEEeCC--eeC-------CCC----------cEE---EeCcEEEEecCCCCCCe
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKN--NNL-------PGG----------EYS---YSGNSLTVRHTNRHSAG  162 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~-------~~~----------~~~---~~~~~l~i~~~~~~d~g  162 (187)
                      |....+.+|+++.|.|...+.-...+.||+..  ..+       ...          +..   .....|.|.....+|++
T Consensus         8 P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~dsa   87 (112)
T d1fo0b_           8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGR   87 (112)
T ss_dssp             CSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSCE
T ss_pred             CCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCCc
Confidence            44556788999999999866555678999852  211       011          010   12356888899999999


Q ss_pred             EEEEEEec
Q psy15738        163 IYLCVANN  170 (187)
Q Consensus       163 ~y~C~~~n  170 (187)
                      .|.|....
T Consensus        88 ~Y~Ca~~~   95 (112)
T d1fo0b_          88 TLYCTCSA   95 (112)
T ss_dssp             EEEEEEES
T ss_pred             cEEEEEec
Confidence            99998654

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.44  E-value=3.4e-05  Score=43.63  Aligned_cols=27  Identities=0%  Similarity=-0.064  Sum_probs=16.6

Q ss_pred             EEEEEecccceeEEeec--cc-eeeEEEEE
Q psy15738         65 ILAMEKEEEERKKKKKR--KK-RKKKKKKK   91 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~--~~-~~~~~~~l   91 (187)
                      +..+..+|.|.|+|.+.  .+ ..+..+.|
T Consensus        66 i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          66 SNPVKAKDAGSYQCVATNARGTVVSREASL   95 (97)
T ss_dssp             ESCCHHHHCEEEEEEEEETTEEEECCCEEE
T ss_pred             EecccccCCEEEEEEEEECCCEEEEEEEEE
Confidence            44567789999999443  23 22445555

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=0.0005  Score=37.69  Aligned_cols=55  Identities=25%  Similarity=0.585  Sum_probs=41.3

Q ss_pred             EEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCC-CCCeEEEEEEe
Q psy15738        109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNR-HSAGIYLCVAN  169 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~  169 (187)
                      ....|.+|.|.|+..+.  ..|.|.+++..++..    ....|.+.+.+. +++|-|.|...
T Consensus        10 VSISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~----~~~~L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          10 VSISGTSVELTCPLDSD--ENLKWEKNGQELPQK----HDKHLVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             EEEETTEEEEECSSCCC--TTCEEEETTEEECSC----CCSEEEEESCCTTTSCEEEEEECS
T ss_pred             EEEeCCEEEEECCCCCC--CceEEeeccccCCCC----CCcEEEEccccccccCcceEEecC
Confidence            34569999999987643  469999999876543    235688888765 78999999643

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=9.3e-05  Score=42.42  Aligned_cols=61  Identities=20%  Similarity=0.281  Sum_probs=39.8

Q ss_pred             cCCcEEEEeEeccC-CCC-cEEEEeCCeeCCCCcEEE----------eCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        112 KGYSVTLECKADGN-PVP-NITWTRKNNNLPGGEYSY----------SGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       112 ~g~~~~l~C~~~g~-p~p-~~~W~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      .+.++.|.|.+.|. |.. .+.|.++|..+.......          ..+.|.+..-.......|.|.+....
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQG   92 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETT
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence            34678899999985 433 589999998775442211          12345555433334567999999864

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.39  E-value=0.00062  Score=38.28  Aligned_cols=62  Identities=15%  Similarity=0.198  Sum_probs=37.5

Q ss_pred             cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEEE-----eCc---EEEEecCCCCCCeEEEEEEecCCC
Q psy15738        112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYSY-----SGN---SLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~-----~~~---~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      .++...|.|.+.|..+.  .+.|.++|..+..+....     ..+   ......+...+...|.|.+....-
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl   86 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSL   86 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTTC
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCCC
Confidence            35666899999997543  689999997654432211     111   222334556667899999997644

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=0.0013  Score=35.20  Aligned_cols=65  Identities=20%  Similarity=0.356  Sum_probs=43.1

Q ss_pred             cCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEeC
Q psy15738        112 KGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK  187 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~~  187 (187)
                      +..++.|.|..   ....+.|++++..+....  ....+|.+-+....-.|.|.|.+..    .  .+..|.|.|+
T Consensus        21 ~dGsV~L~Cn~---~~k~i~W~kdg~~i~~~~--~~~ktlnLG~~~~DPRGiY~C~g~~----~--~s~~LQVYYR   85 (86)
T d1jbja1          21 GDGSVLLTCGL---TDKTIKWLKDGSIISPLN--ATKNTWNLGNNAKDPRGTYQCQGAK----E--TSNPLQVYYR   85 (86)
T ss_dssp             SSCEEEEECSS---SCSCEEEEETTEECCCSS--CCSSCCEEEETTSCCEEEEEEEESS----C--EEEEEEEECC
T ss_pred             cCCeEEEEeCC---CCcEEEEecCCceecccc--cccceeecCCcccCCCcceEcCCCc----c--cCccEEEEEe
Confidence            34678899954   345899999998754331  1235567777776668999996443    1  3445778775

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.37  E-value=0.00056  Score=38.62  Aligned_cols=62  Identities=24%  Similarity=0.325  Sum_probs=38.9

Q ss_pred             ecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEE----E-eCc---EEEEecCCCCCCeEEEEEEecCC
Q psy15738        111 KKGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYS----Y-SGN---SLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~----~-~~~---~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      ..++...|.|.+.|..+.  .++|.++|..+..+...    . ..+   ......+...+...|.|.+....
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   88 (99)
T d1uvqa1          17 TLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWG   88 (99)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence            456788999999998443  68999999876543211    1 111   11112233445568999999753

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=7.8e-05  Score=42.97  Aligned_cols=44  Identities=11%  Similarity=0.016  Sum_probs=29.8

Q ss_pred             eeeccEEEeeccccccceeEEEEEecccceeEEee--c-cceeeEEEEEEE
Q psy15738         46 ITSCSYIILATSLLHYLSYILAMEKEEEERKKKKK--R-KKRKKKKKKKEK   93 (187)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~--~-~~~~~~~~~l~v   93 (187)
                      .|.+|..+..++.+.    |..|+.+|+|.|+|..  . ......++.|.|
T Consensus        60 ~y~gR~~l~~ngSL~----I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          60 AYSGREIIYSNGSLL----FQMITMKDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             SCCSSEEECTTSCEE----ECSCCGGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             cceeEEEEcccccEE----EcCCCchhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            356777777666555    9999999999999932  2 233444555554

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00029  Score=40.31  Aligned_cols=64  Identities=19%  Similarity=0.257  Sum_probs=41.2

Q ss_pred             cCCcEEEEeEeccCCC--CcEEEEeCCeeCCCCcEEE------------eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        112 KGYSVTLECKADGNPV--PNITWTRKNNNLPGGEYSY------------SGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~------------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      .++.++|.|.+.|.-+  ..+.|.++|..+.......            ..+.|.+..-.......|.|.+.......
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~   95 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAASP   95 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTSTT
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCCC
Confidence            4567899999988633  4799999998765432211            12345554433344568999999865433

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.001  Score=35.99  Aligned_cols=73  Identities=21%  Similarity=0.431  Sum_probs=48.3

Q ss_pred             EecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC----cEEEeCcEEEEecCCC-CCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738        110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPGG----EYSYSGNSLTVRHTNR-HSAGIYLCVANNMVGSSAAASIALHV  184 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~----~~~~~~~~l~i~~~~~-~d~g~y~C~~~n~~g~~~s~~~~l~v  184 (187)
                      ...|.+|.|.|+..  ....+.|.+++..+...    ........|.+.+.+. +++|.|.|.+........+..+.|.+
T Consensus         7 sISGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~~~~~~~~~~LYLKA   84 (91)
T d1xiwa_           7 SISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA   84 (91)
T ss_dssp             EEETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGCCEEEEEEE
T ss_pred             EEeCCEEEEECCCC--CCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCCCCCCCcceEEEEEe
Confidence            45689999999743  34679999998766432    1122346788888776 68999999886543222234455554

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=7.2e-05  Score=43.56  Aligned_cols=33  Identities=3%  Similarity=-0.086  Sum_probs=22.3

Q ss_pred             eeEEEEEecc-cceeEEee--ccceeeEEEEEEEEc
Q psy15738         63 SYILAMEKEE-EERKKKKK--RKKRKKKKKKKEKRI   95 (187)
Q Consensus        63 ~~~~~v~~~d-~g~y~c~~--~~~~~~~~~~l~v~~   95 (187)
                      +.|..+..+| .|.|+|.+  ..+..+..+.|.|..
T Consensus        71 L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~~~L~V~~  106 (115)
T d2crya1          71 LTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG  106 (115)
T ss_dssp             EECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCSC
T ss_pred             EEEeccchhcCCeEEEEEEEECCCeEEEEEEEEEEC
Confidence            3356777888 69999944  455566666666653

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00037  Score=39.71  Aligned_cols=32  Identities=6%  Similarity=0.083  Sum_probs=19.2

Q ss_pred             EEEEEecccceeEEeec--cceeeEEEEEEEEcC
Q psy15738         65 ILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIP   96 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~   96 (187)
                      +..+..+|.|.|+|.+.  .+.....+.+.+..|
T Consensus        64 i~~~~~dd~g~ytC~A~n~~g~~~~~~~~~~s~p   97 (103)
T d1iama1          64 VLVRRDHHGAQFSCRTELDLRPQGLELFENTSAP   97 (103)
T ss_dssp             EECCSSCSSCEEEEEEEEECGGGTSCEEEEECCC
T ss_pred             EeeehhHCCCEEEEEEEeCCCCccCeEeeeEcCC
Confidence            55566667889999554  333344555555433

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.21  E-value=0.0018  Score=35.82  Aligned_cols=57  Identities=23%  Similarity=0.237  Sum_probs=38.1

Q ss_pred             CCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEEE---------eCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        113 GYSVTLECKADGNPVP--NITWTRKNNNLPGGEYSY---------SGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      +..+.|.|.+.|..+.  .++|.++|..+.......         ..+.|.+.   ..+...|.|.+....
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~---~~~~~~ytC~V~H~s   82 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVK---RGDEHHYQCQVEHEG   82 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEEC---CCCCCEEEEEEEeCC
Confidence            4578999999997433  689999998775443221         11334443   345578999999754

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.21  E-value=0.0009  Score=39.27  Aligned_cols=39  Identities=8%  Similarity=-0.140  Sum_probs=28.7

Q ss_pred             cceeEEEEEecccceeEEee--ccceeeEEEEEEEEcCCee
Q psy15738         61 YLSYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRI   99 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~   99 (187)
                      ..+.|.+++.+|+|.|+|..  .....+..+.|.|..|+..
T Consensus        81 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~~  121 (126)
T d1pkoa_          81 VALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYW  121 (126)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECTTTT
T ss_pred             EEEEEEEEchhHCeEEEEEEEECCCEEEEEEEEEEeCCCEE
Confidence            44557889999999999943  3455667788999876544

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00016  Score=41.72  Aligned_cols=62  Identities=21%  Similarity=0.356  Sum_probs=39.9

Q ss_pred             ecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEE---------------EeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        111 KKGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYS---------------YSGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~---------------~~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      ..++.+.|.|.+.|.-+.  .|.|+++|..+......               ...+.|.+..-.......|.|.+....
T Consensus        18 ~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          18 ALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             TSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             ccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCC
Confidence            457789999999886433  69999999876433211               112344444333233568999998754

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.08  E-value=0.0021  Score=37.43  Aligned_cols=62  Identities=21%  Similarity=0.387  Sum_probs=40.9

Q ss_pred             EEecCCcEEEEeEeccCC----CCcEEEEeCC--eeCC-----------------CCcEEEe------CcEEEEecCCCC
Q psy15738        109 EVKKGYSVTLECKADGNP----VPNITWTRKN--NNLP-----------------GGEYSYS------GNSLTVRHTNRH  159 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p----~p~~~W~~~~--~~~~-----------------~~~~~~~------~~~l~i~~~~~~  159 (187)
                      .+.+|+++.|.|.+.|..    ...+.|++..  ..+.                 .++....      .-.|.|.++..+
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~e   90 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPV   90 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGG
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeec
Confidence            467899999999987643    2357799742  1100                 1122211      125899999999


Q ss_pred             CCeEEEEEEec
Q psy15738        160 SAGIYLCVANN  170 (187)
Q Consensus       160 d~g~y~C~~~n  170 (187)
                      |++.|.|....
T Consensus        91 DsAvYyCAr~~  101 (120)
T d2agjh1          91 DTATYYCARTS  101 (120)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEeeEecC
Confidence            99999997554

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0017  Score=36.25  Aligned_cols=58  Identities=19%  Similarity=0.231  Sum_probs=37.4

Q ss_pred             cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEEE-----------eCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYSY-----------SGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      .+..+.|.|.+.|..+.  .++|.++|..+.......           ....|.+   ...+...|+|.+....
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v---~~~~~~~ytC~V~H~~   84 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVV---PSGEEQRYTCHVQHEG   84 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEE---ETTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEE---EcCCCCEEEEEEEECc
Confidence            35678999999998655  579999998764332110           1123333   3344567999999753

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00063  Score=37.98  Aligned_cols=31  Identities=3%  Similarity=-0.102  Sum_probs=22.0

Q ss_pred             eeEEEEEecccceeEEee--ccce-eeEEEEEEE
Q psy15738         63 SYILAMEKEEEERKKKKK--RKKR-KKKKKKKEK   93 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~~--~~~~-~~~~~~l~v   93 (187)
                      +.|..+..+|.|.|+|.+  ..+. .+..+.|.|
T Consensus        62 L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          62 FNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             EEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEE
Confidence            447899999999999944  3333 345567776

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.00086  Score=37.01  Aligned_cols=58  Identities=22%  Similarity=0.197  Sum_probs=37.7

Q ss_pred             cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEEE-----------eCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYSY-----------SGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      .++.+.|.|.+.|..+.  .++|.++|..+..+....           ..+.|.+..   .+...|.|.+....
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~---~~~~~ytC~V~H~~   84 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPL---GKEQYYTCHVYHQG   84 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEES---STTTTCEEEEECSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecC---cCCCEEEEEEEECC
Confidence            45689999999997554  579999998765443211           113344443   33446999998653

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00068  Score=38.74  Aligned_cols=16  Identities=6%  Similarity=-0.068  Sum_probs=9.5

Q ss_pred             EEEEec-ccceeEEeec
Q psy15738         66 LAMEKE-EEERKKKKKR   81 (187)
Q Consensus        66 ~~v~~~-d~g~y~c~~~   81 (187)
                      ..+..+ |.|.|+|.+.
T Consensus        67 ~~~~~~d~g~~ytC~A~   83 (106)
T d1zxqa1          67 STADREDGHRNFSCLAV   83 (106)
T ss_dssp             EECCGGGGGCEEEEEEE
T ss_pred             EeeehhcCCcEEEEEEE
Confidence            334344 5568999554

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.001  Score=37.67  Aligned_cols=60  Identities=15%  Similarity=0.227  Sum_probs=39.5

Q ss_pred             CCcEEEEeEeccCCC--CcEEEEeCCeeCCCCcEE-----------EeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        113 GYSVTLECKADGNPV--PNITWTRKNNNLPGGEYS-----------YSGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       113 g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      +..+.|.|.+.|.-+  ..|.|.++|..+..+...           ...+.|.+..-.......|.|.+....
T Consensus        20 ~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          20 TAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG   92 (102)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred             CCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            467899999988743  369999999765433211           112345555444445679999999753

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.95  E-value=0.0022  Score=36.35  Aligned_cols=59  Identities=19%  Similarity=0.344  Sum_probs=38.8

Q ss_pred             ecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEE----EeC------cEEEEecCCCCCCeEEEEEEecCC
Q psy15738        111 KKGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYS----YSG------NSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~----~~~------~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      ..|+..+|.|.+.|.-++  .+.|.++|.........    ..+      +.|.+   ...+...|.|.+....
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~~   86 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNF---TPEPSDIFSCIVTHEP   86 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEE---CCCTTCCEEEEEEETT
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEE---ecCCCCEEEEEEEeCC
Confidence            457778999999997544  68899999876433221    111      23333   4445567999999863

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=96.95  E-value=0.0029  Score=35.13  Aligned_cols=59  Identities=12%  Similarity=0.249  Sum_probs=35.7

Q ss_pred             CCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEE-----Ee-Cc---EEEEecCCCCCCeEEEEEEecC
Q psy15738        113 GYSVTLECKADGNPVP--NITWTRKNNNLPGGEYS-----YS-GN---SLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~-----~~-~~---~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      +..+.|.|.+.|..+.  .+.|.++|..+......     .. .+   ......+...+...|.|.+...
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~   84 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHS   84 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEET
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEEC
Confidence            4568999999997433  68999999876543211     11 11   1111223334445799999864

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.0025  Score=36.21  Aligned_cols=65  Identities=15%  Similarity=0.198  Sum_probs=38.8

Q ss_pred             ecCCcEEEEeEeccCCC--CcEEEEeCCeeCCCCcE----------EEeCcEEEEecCCCC--CCeEEEEEEecCCCCc
Q psy15738        111 KKGYSVTLECKADGNPV--PNITWTRKNNNLPGGEY----------SYSGNSLTVRHTNRH--SAGIYLCVANNMVGSS  175 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~----------~~~~~~l~i~~~~~~--d~g~y~C~~~n~~g~~  175 (187)
                      .....+.|.|.+.|..+  ..++|.+++........          ....+.|.+......  ....|+|.+....+..
T Consensus        19 ~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~   97 (105)
T d1dn0b2          19 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNK   97 (105)
T ss_dssp             --CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCE
T ss_pred             CCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCE
Confidence            34577899999999643  36899998865432211          111234555443322  1247999999876544

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.84  E-value=0.00049  Score=40.80  Aligned_cols=61  Identities=18%  Similarity=0.231  Sum_probs=39.7

Q ss_pred             ecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcE----------------EEeCcEEEEecCCCCCCe-EEEEEEecC
Q psy15738        111 KKGYSVTLECKADGNPVP--NITWTRKNNNLPGGEY----------------SYSGNSLTVRHTNRHSAG-IYLCVANNM  171 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~----------------~~~~~~l~i~~~~~~d~g-~y~C~~~n~  171 (187)
                      ..+..+.|.|.+.|..+.  .|.|+++|..+..+..                ....+.|.+......+.| .|.|.+...
T Consensus        18 ~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H~   97 (127)
T d1ogae2          18 SHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFY   97 (127)
T ss_dssp             HHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred             ccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEEC
Confidence            446778999999987433  5899999986543211                111245666554444544 799999864

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=96.84  E-value=0.0011  Score=37.12  Aligned_cols=58  Identities=19%  Similarity=0.271  Sum_probs=37.6

Q ss_pred             cCCcEEEEeEeccCCC-C-cEEEEeCCeeCCCCcEE---E-------eCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        112 KGYSVTLECKADGNPV-P-NITWTRKNNNLPGGEYS---Y-------SGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~-p-~~~W~~~~~~~~~~~~~---~-------~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      .++.+.|.|.+.|..+ . .+.|++++.........   .       ..+.|.+..   .+...|.|.+....
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeCC
Confidence            3567899999999744 3 68999998765433211   0       123344443   44567999999764

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.0043  Score=35.93  Aligned_cols=22  Identities=18%  Similarity=0.445  Sum_probs=19.7

Q ss_pred             EEEEecCCCCCCeEEEEEEecC
Q psy15738        150 SLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       150 ~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      .|.|.++..+|+|.|.|.+...
T Consensus        78 ~L~I~~l~~~DsavYyCa~~~~   99 (118)
T d1yjdc1          78 TFYLQNLYVNQTDIYFCKIEVM   99 (118)
T ss_dssp             EEEEESCCGGGCEEEEEEEEEE
T ss_pred             EEEECCCCcccCeEEEEEEecc
Confidence            6999999999999999987654

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.83  E-value=0.0064  Score=35.13  Aligned_cols=63  Identities=22%  Similarity=0.497  Sum_probs=41.9

Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee------C--CC----------CcEEEe----C--cEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKN--NN------L--PG----------GEYSYS----G--NSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~------~--~~----------~~~~~~----~--~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|....  .+.|++.-  ..      +  ..          ++....    .  -.|.|.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~e   89 (119)
T d1rz7h1          10 EVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSE   89 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCcc
Confidence            457889999999999886533  57887632  10      0  11          121111    1  24889999999


Q ss_pred             CCeEEEEEEec
Q psy15738        160 SAGIYLCVANN  170 (187)
Q Consensus       160 d~g~y~C~~~n  170 (187)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (119)
T d1rz7h1          90 DTAVYYCAADP  100 (119)
T ss_dssp             GCEEEEEEECT
T ss_pred             cceEEEEeecC
Confidence            99999997654

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.83  E-value=0.0045  Score=35.66  Aligned_cols=65  Identities=18%  Similarity=0.415  Sum_probs=42.9

Q ss_pred             EEEecCCcEEEEeEeccCCC--CcEEEEeCC--ee------C--C----------CCcEEE--e--C--cEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPV--PNITWTRKN--NN------L--P----------GGEYSY--S--G--NSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~--~~------~--~----------~~~~~~--~--~--~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|..-  -.+.|++..  ..      +  .          .++...  .  .  -.|.|.++..+
T Consensus        10 ~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~e   89 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSD   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcC
Confidence            45788999999999988643  247787632  10      0  0          111111  1  1  24899999999


Q ss_pred             CCeEEEEEEecCC
Q psy15738        160 SAGIYLCVANNMV  172 (187)
Q Consensus       160 d~g~y~C~~~n~~  172 (187)
                      |++.|.|......
T Consensus        90 DtAvYYCA~~~~~  102 (117)
T d1iqdb1          90 DTAVYYCAVPDPD  102 (117)
T ss_dssp             GCEEEEEEECSSS
T ss_pred             cceEEEEeEcCCC
Confidence            9999999876543

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.78  E-value=0.0043  Score=35.77  Aligned_cols=61  Identities=21%  Similarity=0.492  Sum_probs=40.3

Q ss_pred             EEEecCCcEEEEeEeccCCC--CcEEEEeCC--e------eC--CC----------CcEEEe--C----cEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPV--PNITWTRKN--N------NL--PG----------GEYSYS--G----NSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~--~------~~--~~----------~~~~~~--~----~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|..-  -.+.|++.-  .      .+  ..          ++....  +    -.|.+.++..+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~e   89 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccC
Confidence            45788999999999988643  357787632  1      00  01          111111  1    24889999999


Q ss_pred             CCeEEEEEE
Q psy15738        160 SAGIYLCVA  168 (187)
Q Consensus       160 d~g~y~C~~  168 (187)
                      |++.|.|..
T Consensus        90 DtAvYYCAr   98 (118)
T d1nlbh1          90 DTATYFCAR   98 (118)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEee
Confidence            999999954

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.74  E-value=0.0051  Score=35.58  Aligned_cols=64  Identities=22%  Similarity=0.492  Sum_probs=42.6

Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCCe--e------CC-----------CCcEEE--eC----cEEEEecCCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKNN--N------LP-----------GGEYSY--SG----NSLTVRHTNRHS  160 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~~--~------~~-----------~~~~~~--~~----~~l~i~~~~~~d  160 (187)
                      -.+.+|+++.|.|.+.|....  .+.|++.-.  .      +.           .++...  ..    -.|.|.++..+|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            457889999999999886533  477887421  0      00           011211  11    258999999999


Q ss_pred             CeEEEEEEecC
Q psy15738        161 AGIYLCVANNM  171 (187)
Q Consensus       161 ~g~y~C~~~n~  171 (187)
                      ++.|.|.....
T Consensus        89 tA~YYCAr~~~   99 (119)
T d1kxvc_          89 TAMYYCKPSLR   99 (119)
T ss_dssp             CEEEEEEEEES
T ss_pred             cceEeeeeccc
Confidence            99999976643

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0014  Score=37.11  Aligned_cols=62  Identities=16%  Similarity=0.287  Sum_probs=39.1

Q ss_pred             cCCcEEEEeEeccC-CC-CcEEEEeCCeeCCCCcE----------EEeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        112 KGYSVTLECKADGN-PV-PNITWTRKNNNLPGGEY----------SYSGNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       112 ~g~~~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~~----------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      .++.+.|.|.+.|. |. ..+.|.++|........          ....+.|.+..-.....-.|.|.+....-
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l   91 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL   91 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            35678999999986 43 37899999976432210          01123455554333344579999998643

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00064  Score=38.59  Aligned_cols=61  Identities=15%  Similarity=0.244  Sum_probs=38.3

Q ss_pred             cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEE----E-------eCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYS----Y-------SGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~----~-------~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      .+..+.|.|.+.|..+.  .+.|.++|..+..+...    .       ..+.|.+..........|.|.+....
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG   92 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            35678999999986433  68899999877544221    1       11234443322223457999999853

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.71  E-value=0.0039  Score=35.48  Aligned_cols=62  Identities=15%  Similarity=0.255  Sum_probs=39.7

Q ss_pred             cCCcEEEEeEeccCCC--CcEEEEeCCeeCCCCcEE------------EeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        112 KGYSVTLECKADGNPV--PNITWTRKNNNLPGGEYS------------YSGNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~------------~~~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      .+..+.|.|.+.|.-+  ..|.|.++|..+......            ...+.|.+..-.......|.|.+.....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~   94 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS   94 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            3567899999988643  369999999876543211            1123455544433335689999997543

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.69  E-value=0.0042  Score=36.01  Aligned_cols=62  Identities=26%  Similarity=0.483  Sum_probs=40.7

Q ss_pred             EEecCCcEEEEeEeccCC--CCcEEEEeC--CeeC--------C----------CCcEEEe----C--cEEEEecCCCCC
Q psy15738        109 EVKKGYSVTLECKADGNP--VPNITWTRK--NNNL--------P----------GGEYSYS----G--NSLTVRHTNRHS  160 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p--~p~~~W~~~--~~~~--------~----------~~~~~~~----~--~~l~i~~~~~~d  160 (187)
                      .+.+|+++.|.|.+.|..  .-.+.|++.  |..+        .          .++....    .  -.|.|.++..+|
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eD   90 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDD   90 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGG
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccc
Confidence            567899999999987753  234778763  2110        0          1122111    1  248999999999


Q ss_pred             CeEEEEEEec
Q psy15738        161 AGIYLCVANN  170 (187)
Q Consensus       161 ~g~y~C~~~n  170 (187)
                      ++.|.|....
T Consensus        91 sAvYYCA~~~  100 (119)
T d1qnzh_          91 SAVYYCAIHY  100 (119)
T ss_dssp             CEEEEEEECS
T ss_pred             eeEEEEEEec
Confidence            9999997654

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.68  E-value=0.011  Score=34.32  Aligned_cols=64  Identities=22%  Similarity=0.446  Sum_probs=41.9

Q ss_pred             eEEEecCCcEEEEeEeccCC--CCcEEEEeCC--eeC--------CC----------CcEEEe----C--cEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNP--VPNITWTRKN--NNL--------PG----------GEYSYS----G--NSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~--~~~--------~~----------~~~~~~----~--~~l~i~~~~~  158 (187)
                      ...+.+|+++.|.|.+.|..  .-.+.|++..  ..+        ..          ++....    .  -.|.|.+++.
T Consensus         9 ~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~   88 (121)
T d1j05b_           9 AELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS   88 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCc
Confidence            34678899999999988754  2357787632  110        01          111111    1  2488999999


Q ss_pred             CCCeEEEEEEec
Q psy15738        159 HSAGIYLCVANN  170 (187)
Q Consensus       159 ~d~g~y~C~~~n  170 (187)
                      +|++.|.|....
T Consensus        89 eDtAvYYCAr~~  100 (121)
T d1j05b_          89 EDTAVYYCAPFG  100 (121)
T ss_dssp             GGCEEEEEEEEB
T ss_pred             CcceEEEeEeec
Confidence            999999997654

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.66  E-value=0.0077  Score=33.92  Aligned_cols=62  Identities=21%  Similarity=0.447  Sum_probs=36.9

Q ss_pred             cCCcEEEEeEeccCCCC--cEEEEeCC--eeC--------C----------CCcEEEe------CcEEEEecCCCCCCeE
Q psy15738        112 KGYSVTLECKADGNPVP--NITWTRKN--NNL--------P----------GGEYSYS------GNSLTVRHTNRHSAGI  163 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p--~~~W~~~~--~~~--------~----------~~~~~~~------~~~l~i~~~~~~d~g~  163 (187)
                      +|++++|.|.+.|..-.  .+.|++..  ..+        .          .++....      .-.|.|.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            58899999999886433  47787632  110        0          1112111      1258999999999999


Q ss_pred             EEEEEecCCC
Q psy15738        164 YLCVANNMVG  173 (187)
Q Consensus       164 y~C~~~n~~g  173 (187)
                      |.|......+
T Consensus        81 YYCAr~~~~~   90 (103)
T d1oari_          81 YYCARMWYYG   90 (103)
T ss_dssp             EEEEEEECSS
T ss_pred             EEeEEECCCC
Confidence            9998655433

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.001  Score=35.35  Aligned_cols=65  Identities=22%  Similarity=0.397  Sum_probs=40.5

Q ss_pred             cCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEeC
Q psy15738        112 KGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK  187 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~~  187 (187)
                      ...++.|.|..   ....+.|++++..+...  .....+|.+-+....-.|.|.|.+..    ..+.  .|.|.|+
T Consensus        16 ~dg~V~L~Cn~---~~k~i~W~kdg~~i~~~--~~~~ktlnLG~~~~DPRG~Y~C~~~~----~~s~--~LQVyYR   80 (81)
T d1sy6a1          16 EDGSVLLTCDA---EAKNITWFKDGKMIGFL--TEDKKKWNLGSNAKDPRGMYQCKGSQ----NKSK--PLQVYYR   80 (81)
T ss_dssp             SSSEEEEEECS---CSSEEEEEETTEEEEEE--ESSCCCEEEEEGGGCCEEEEEEESSS----SCCC--CEEEEEE
T ss_pred             cCCeEEEEeCC---CCcEEEEecCCeEeecc--cCCcceeecCCcccCCCcceEcCCCC----cCCe--eEEEEEe
Confidence            34678999953   34589999998743211  01235677777666668999996532    2122  3666663

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0085  Score=33.99  Aligned_cols=61  Identities=15%  Similarity=0.298  Sum_probs=40.1

Q ss_pred             CCcEEEEeEeccC-CC-CcEEEEeCCeeCCCCcEE------------EeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        113 GYSVTLECKADGN-PV-PNITWTRKNNNLPGGEYS------------YSGNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       113 g~~~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~~~------------~~~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      .+.+.|.|.+.|. |. ..|.|.+||.........            ...+.|.+..-.......|.|.+.....
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~   94 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL   94 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            5678999999986 43 369999999866543221            1123455554433445689999998643

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.54  E-value=0.0084  Score=33.71  Aligned_cols=64  Identities=16%  Similarity=0.246  Sum_probs=39.2

Q ss_pred             cCCcEEEEeEeccC-CCC--cEEEEeCCeeCCCC---------cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        112 KGYSVTLECKADGN-PVP--NITWTRKNNNLPGG---------EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       112 ~g~~~~l~C~~~g~-p~p--~~~W~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      .++.+.|.|.+.|. |+.  .+.|.+++......         ......+.|.+..........|.|.+.......
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~~   93 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV   93 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCCC
Confidence            46789999999995 543  35677776543210         111122456666555445678999999765443

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.50  E-value=0.014  Score=34.00  Aligned_cols=64  Identities=23%  Similarity=0.479  Sum_probs=41.7

Q ss_pred             EEEecCCcEEEEeEeccCCC--CcEEEEeCC--eeC--------C----------CCcEEE--eC----cEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPV--PNITWTRKN--NNL--------P----------GGEYSY--SG----NSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~--~~~--------~----------~~~~~~--~~----~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|..-  -.+.|++.-  .-+        .          .++...  ..    -.|.|.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~e   89 (127)
T d2fx7h1          10 EVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPE   89 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcc
Confidence            45678999999999988643  247787632  100        0          111111  11    24889999999


Q ss_pred             CCeEEEEEEecC
Q psy15738        160 SAGIYLCVANNM  171 (187)
Q Consensus       160 d~g~y~C~~~n~  171 (187)
                      |++.|.|.....
T Consensus        90 DTavYYCAR~~~  101 (127)
T d2fx7h1          90 DTAVYYCAREGT  101 (127)
T ss_dssp             GCEEEEEEEEEE
T ss_pred             cceEEEEeeccc
Confidence            999999986643

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.48  E-value=0.0076  Score=34.48  Aligned_cols=62  Identities=24%  Similarity=0.546  Sum_probs=40.9

Q ss_pred             EEEecCCcEEEEeEeccCCC--CcEEEEeCC--ee------C-C-----------CCcEEEe--C----cEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPV--PNITWTRKN--NN------L-P-----------GGEYSYS--G----NSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~--~~------~-~-----------~~~~~~~--~----~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|..-  -.+.|++..  .-      + .           .++....  +    -.|.|.++..+
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~e   89 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSE   89 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccC
Confidence            35788999999999988643  357787632  10      1 0           1111111  1    24899999999


Q ss_pred             CCeEEEEEEe
Q psy15738        160 SAGIYLCVAN  169 (187)
Q Consensus       160 d~g~y~C~~~  169 (187)
                      |++.|.|...
T Consensus        90 DtAvYYCA~~   99 (114)
T d1indh1          90 DTALYFCASH   99 (114)
T ss_dssp             GCEEEEEECG
T ss_pred             cccEEEECCC
Confidence            9999999754

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.46  E-value=0.0099  Score=34.66  Aligned_cols=62  Identities=21%  Similarity=0.477  Sum_probs=40.8

Q ss_pred             eEEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee------C--CC----------CcEEEe----C--cEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVP--NITWTRKN--NN------L--PG----------GEYSYS----G--NSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~------~--~~----------~~~~~~----~--~~l~i~~~~~  158 (187)
                      ...+.+|+++.|.|.+.|..-.  .+.|++.-  .-      +  ..          ++....    .  -.|.+.+++.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~   88 (127)
T d1n0xh1           9 AEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRS   88 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCC
Confidence            3567889999999999886433  47787632  11      0  01          111111    1  2488889999


Q ss_pred             CCCeEEEEEE
Q psy15738        159 HSAGIYLCVA  168 (187)
Q Consensus       159 ~d~g~y~C~~  168 (187)
                      +|++.|.|.-
T Consensus        89 eDtAvYYCAR   98 (127)
T d1n0xh1          89 ADTAVYYCAR   98 (127)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCceEEEEEe
Confidence            9999999964

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=96.45  E-value=0.0093  Score=34.27  Aligned_cols=65  Identities=22%  Similarity=0.410  Sum_probs=42.8

Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCC--eeC-------C----------CCcEEEe------CcEEEEecCCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKN--NNL-------P----------GGEYSYS------GNSLTVRHTNRHS  160 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~~-------~----------~~~~~~~------~~~l~i~~~~~~d  160 (187)
                      ..+.+|+++.|.|.+.|..-.  .+.|++..  ..+       .          .++....      .-.|.|.+++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eD   89 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAAD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccccc
Confidence            356789999999999886433  57788732  111       0          1111111      1258999999999


Q ss_pred             CeEEEEEEecCC
Q psy15738        161 AGIYLCVANNMV  172 (187)
Q Consensus       161 ~g~y~C~~~n~~  172 (187)
                      ++.|.|......
T Consensus        90 tAvYyCAr~~~~  101 (116)
T d7fabh1          90 TAVYYCARNLIA  101 (116)
T ss_dssp             CEEEEEEEECSS
T ss_pred             ceEEEeeeecCC
Confidence            999999865443

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.45  E-value=0.015  Score=33.83  Aligned_cols=62  Identities=19%  Similarity=0.403  Sum_probs=39.8

Q ss_pred             EEEecCCcEEEEeEeccCC--CC--cEEEEeC--CeeC--------CC---------CcEEE--e--C--cEEEEecCCC
Q psy15738        108 VEVKKGYSVTLECKADGNP--VP--NITWTRK--NNNL--------PG---------GEYSY--S--G--NSLTVRHTNR  158 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p--~p--~~~W~~~--~~~~--------~~---------~~~~~--~--~--~~l~i~~~~~  158 (187)
                      ..+.+|++++|.|.+.|..  ..  .+.|++.  |..+        ..         ++...  .  .  -.|.|.+++.
T Consensus        10 ~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~   89 (123)
T d1r0ah1          10 GIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVET   89 (123)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeeccc
Confidence            3567899999999988753  22  3578863  1111        00         11111  1  1  2489999999


Q ss_pred             CCCeEEEEEEe
Q psy15738        159 HSAGIYLCVAN  169 (187)
Q Consensus       159 ~d~g~y~C~~~  169 (187)
                      +|++.|.|...
T Consensus        90 eDsAvYyCAr~  100 (123)
T d1r0ah1          90 ADTAIYYCAQS  100 (123)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEeeccc
Confidence            99999999754

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.45  E-value=0.0082  Score=34.64  Aligned_cols=63  Identities=21%  Similarity=0.460  Sum_probs=41.5

Q ss_pred             eEEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee------CC--C----------CcEEEe----C--cEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVP--NITWTRKN--NN------LP--G----------GEYSYS----G--NSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~------~~--~----------~~~~~~----~--~~l~i~~~~~  158 (187)
                      ...+.+|+++.|.|.+.|....  .+.|++..  ..      +.  .          ++....    .  -.|.|.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (119)
T d1eapb1           9 TELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTS   88 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccC
Confidence            3457889999999999887533  57888632  10      11  1          111111    1  2588999999


Q ss_pred             CCCeEEEEEEe
Q psy15738        159 HSAGIYLCVAN  169 (187)
Q Consensus       159 ~d~g~y~C~~~  169 (187)
                      +|++.|.|...
T Consensus        89 eDTAvYYCAr~   99 (119)
T d1eapb1          89 EDSAVYFCKRS   99 (119)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEEEEe
Confidence            99999999643

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.44  E-value=0.0021  Score=36.69  Aligned_cols=62  Identities=21%  Similarity=0.158  Sum_probs=39.2

Q ss_pred             EecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEE----------EeCcEEEEecCCCCC-CeEEEEEEecCCCC
Q psy15738        110 VKKGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYS----------YSGNSLTVRHTNRHS-AGIYLCVANNMVGS  174 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d-~g~y~C~~~n~~g~  174 (187)
                      +..+..+.|.|.+.|.-+.  .+.|.++|.........          ...+.|.+.   .++ ...|.|.+......
T Consensus        21 ~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~---~~~w~~~ytC~V~H~s~~   95 (107)
T d1hxmb2          21 TKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVP---EKSLDKEHRCIVRHENNK   95 (107)
T ss_dssp             GGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEEC---TGGGGSCEEEEEEETTSG
T ss_pred             HccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEe---cccCCCeEEEEEEECCCC
Confidence            3456788999999987544  58899999766443221          112334443   333 23799999976543

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.43  E-value=0.01  Score=33.68  Aligned_cols=62  Identities=24%  Similarity=0.475  Sum_probs=41.1

Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee------C-C-------------CCcEEEe----C--cEEEEecCC
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKN--NN------L-P-------------GGEYSYS----G--NSLTVRHTN  157 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~------~-~-------------~~~~~~~----~--~~l~i~~~~  157 (187)
                      ..+.+|+++.|.|.+.|....  .+.|++..  ..      + .             .++....    .  -.|.|.++.
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~   89 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLK   89 (109)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCC
Confidence            467889999999999886533  57787631  10      0 0             0121111    1  248888999


Q ss_pred             CCCCeEEEEEEe
Q psy15738        158 RHSAGIYLCVAN  169 (187)
Q Consensus       158 ~~d~g~y~C~~~  169 (187)
                      .+|++.|.|.-.
T Consensus        90 ~eDTAvYYCAr~  101 (109)
T d2ck0h1          90 TEDTGIYYCVRG  101 (109)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             HhHCEEEEEEEc
Confidence            999999999754

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.43  E-value=0.007  Score=34.79  Aligned_cols=64  Identities=20%  Similarity=0.383  Sum_probs=42.2

Q ss_pred             EEEecCCcEEEEeEeccCCC--CcEEEEeCC--e------eC--CC----------CcEEEe----C--cEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPV--PNITWTRKN--N------NL--PG----------GEYSYS----G--NSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~--~------~~--~~----------~~~~~~----~--~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|..-  -.+.|++.-  .      .+  ..          ++....    .  -.|.+.++..+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~e   89 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAE   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCC
Confidence            46788999999999998653  357787642  1      00  11          111111    1  24888899999


Q ss_pred             CCeEEEEEEecC
Q psy15738        160 SAGIYLCVANNM  171 (187)
Q Consensus       160 d~g~y~C~~~n~  171 (187)
                      |++.|.|.....
T Consensus        90 DTAvYYCAr~~~  101 (117)
T d1jpth1          90 DTAVYYCARDTA  101 (117)
T ss_dssp             GCEEEEEEEECS
T ss_pred             CceEEEEeecCC
Confidence            999999976543

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.43  E-value=0.015  Score=33.89  Aligned_cols=63  Identities=22%  Similarity=0.481  Sum_probs=41.5

Q ss_pred             EEEecCCcEEEEeEeccCCC--CcEEEEeCC--ee------C--CC----------CcEEE--eC----cEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPV--PNITWTRKN--NN------L--PG----------GEYSY--SG----NSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~--~~------~--~~----------~~~~~--~~----~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|...  -.+.|++..  ..      +  ..          ++...  .+    -.|.|.+++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~e   89 (126)
T d1dfbh1          10 GLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAE   89 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccC
Confidence            45788999999999988653  257787632  10      0  11          11111  11    24889999999


Q ss_pred             CCeEEEEEEec
Q psy15738        160 SAGIYLCVANN  170 (187)
Q Consensus       160 d~g~y~C~~~n  170 (187)
                      |++.|.|....
T Consensus        90 DtavYYCAr~~  100 (126)
T d1dfbh1          90 DMALYYCVKGR  100 (126)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEEEecc
Confidence            99999997654

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.007  Score=32.34  Aligned_cols=49  Identities=33%  Similarity=0.478  Sum_probs=31.0

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEE
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCV  167 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  167 (187)
                      +..+.|.|...  ....|.|.+++..-..    -.+.++++.--...|+|.|+|.
T Consensus        21 ~~~V~L~C~t~--eE~~I~W~kd~~se~~----~~GntltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          21 GEMVVLTCDTP--EEDGITWTLDQSSEVL----GSGKTLTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             CEEEEEECSSS--CCSSCEEEETTCCCCC----EESSEEEEEECSGGGCEEEEEE
T ss_pred             ccEEEEecCCC--cccccEEeeCCccccc----cCCCEEEEEEEeccCCcceeEe
Confidence            45678888532  2246999999754111    1345566554444689999997

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0053  Score=34.08  Aligned_cols=64  Identities=16%  Similarity=0.336  Sum_probs=45.4

Q ss_pred             eEEEecCCcEEEEeEeccCCCCcEE-EEeCCeeCC-CCc-EEE-eCcEEEEecCCCCCCeEEEEEEecC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVPNIT-WTRKNNNLP-GGE-YSY-SGNSLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~~-W~~~~~~~~-~~~-~~~-~~~~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      .+.+.+|+++.+.|.+. .|...+. |...+..+. .+. ... ...-..|.++...+.|.|.|.|.-.
T Consensus        14 ~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          14 IIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             EEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEECCCCCEEEeCCCcccCeEEEEEEEEC
Confidence            46688899999999986 4666654 544555443 222 232 2456889999999999999999754

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.38  E-value=0.0046  Score=35.02  Aligned_cols=60  Identities=25%  Similarity=0.505  Sum_probs=38.3

Q ss_pred             EecCCcEEEEeEeccCC--CCcEEEEeCC--eeC-------C----------CCcEEEe------CcEEEEecCCCCCCe
Q psy15738        110 VKKGYSVTLECKADGNP--VPNITWTRKN--NNL-------P----------GGEYSYS------GNSLTVRHTNRHSAG  162 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~p--~p~~~W~~~~--~~~-------~----------~~~~~~~------~~~l~i~~~~~~d~g  162 (187)
                      +.+|+++.|.|.+.|..  .-.+.|++..  ..+       .          .++....      .-.|.|.++..+|++
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtA   84 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTA   84 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCS
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccce
Confidence            56899999999988753  3357787742  100       0          1121111      125899999999999


Q ss_pred             EEEEEEe
Q psy15738        163 IYLCVAN  169 (187)
Q Consensus       163 ~y~C~~~  169 (187)
                      .|.|...
T Consensus        85 vYyCA~~   91 (107)
T d1sjva_          85 VYYCYTH   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             eeeEecc
Confidence            9999754

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.37  E-value=0.003  Score=35.63  Aligned_cols=60  Identities=13%  Similarity=0.252  Sum_probs=38.4

Q ss_pred             CCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcE----E------EeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        113 GYSVTLECKADGNPVP--NITWTRKNNNLPGGEY----S------YSGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~----~------~~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      .+.+.|.|.+.|..+.  .+.|.++|........    .      ...+.|.+..........|.|.+....
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            4678899999887543  6899999986532211    0      112345555443344567999999853

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.33  E-value=0.0033  Score=35.47  Aligned_cols=61  Identities=20%  Similarity=0.247  Sum_probs=38.4

Q ss_pred             cCCcEEEEeEeccC-CC-CcEEEEeCCeeCCCCcE----------EEeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        112 KGYSVTLECKADGN-PV-PNITWTRKNNNLPGGEY----------SYSGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       112 ~g~~~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~~----------~~~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      .++.+.|.|.+.|. |. ..+.|.++|........          ....+.|.+..-.......|.|.+....
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            46778999999986 43 36999999976432110          1122445555433334568999999754

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.33  E-value=0.0086  Score=34.40  Aligned_cols=63  Identities=21%  Similarity=0.481  Sum_probs=42.1

Q ss_pred             EEEecCCcEEEEeEeccCCC--CcEEEEeCC--eeC-------C----------CCcEEEe----C--cEEEEecCCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPV--PNITWTRKN--NNL-------P----------GGEYSYS----G--NSLTVRHTNRHS  160 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~--~~~-------~----------~~~~~~~----~--~~l~i~~~~~~d  160 (187)
                      ..+.+|++++|.|.+.|...  -.+.|++.-  ..+       .          .++....    .  -.|.|.+++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eD   89 (117)
T d1c5db1          10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED   89 (117)
T ss_dssp             SEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCc
Confidence            35788999999999988753  357888742  111       0          1111111    1  258999999999


Q ss_pred             CeEEEEEEec
Q psy15738        161 AGIYLCVANN  170 (187)
Q Consensus       161 ~g~y~C~~~n  170 (187)
                      ++.|.|....
T Consensus        90 tAvYYCAr~~   99 (117)
T d1c5db1          90 TAIYFCTRED   99 (117)
T ss_dssp             CEEEEEEECC
T ss_pred             ceEEEEeccC
Confidence            9999997554

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.32  E-value=0.011  Score=34.79  Aligned_cols=63  Identities=19%  Similarity=0.372  Sum_probs=41.3

Q ss_pred             EEEecCCcEEEEeEeccCCC----CcEEEEeCC--eeC--------C---------CCcEEE--eC----cEEEEecCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPV----PNITWTRKN--NNL--------P---------GGEYSY--SG----NSLTVRHTNR  158 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~----p~~~W~~~~--~~~--------~---------~~~~~~--~~----~~l~i~~~~~  158 (187)
                      ..+.+|+++.|.|.+.|...    ..+.|++..  ..+        .         .++...  .+    -.|.|.++..
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~   89 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSP   89 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCc
Confidence            35678999999999887542    247898742  110        0         111111  11    2489999999


Q ss_pred             CCCeEEEEEEec
Q psy15738        159 HSAGIYLCVANN  170 (187)
Q Consensus       159 ~d~g~y~C~~~n  170 (187)
                      +|++.|.|....
T Consensus        90 eDtAvYYCAr~~  101 (132)
T d1tjgh1          90 VDTATYFCAHRR  101 (132)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEEEEec
Confidence            999999998654

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.30  E-value=0.0076  Score=34.55  Aligned_cols=65  Identities=23%  Similarity=0.485  Sum_probs=42.7

Q ss_pred             CceEEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee------C--CC----------CcEEE--eC----cEEEEecC
Q psy15738        105 AGKVEVKKGYSVTLECKADGNPVP--NITWTRKN--NN------L--PG----------GEYSY--SG----NSLTVRHT  156 (187)
Q Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~------~--~~----------~~~~~--~~----~~l~i~~~  156 (187)
                      +....+.+|+++.|.|.+.|....  .+.|++.-  ..      +  ..          ++...  ..    -.|.+.++
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL   86 (116)
T d1mjuh1           7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (116)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccccc
Confidence            445678899999999999886533  47787631  10      0  11          11111  11    25888899


Q ss_pred             CCCCCeEEEEEEe
Q psy15738        157 NRHSAGIYLCVAN  169 (187)
Q Consensus       157 ~~~d~g~y~C~~~  169 (187)
                      ..+|++.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (116)
T d1mjuh1          87 TSDDSAVYYCANK   99 (116)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCCceEEEEccc
Confidence            9999999999754

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.30  E-value=0.012  Score=33.85  Aligned_cols=64  Identities=22%  Similarity=0.467  Sum_probs=42.5

Q ss_pred             eEEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee------C--CC----------CcEEE--e--C--cEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVP--NITWTRKN--NN------L--PG----------GEYSY--S--G--NSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~------~--~~----------~~~~~--~--~--~~l~i~~~~~  158 (187)
                      ...+.+|+++.|.|.+.|..-.  .+.|++.-  ..      +  ..          ++...  .  .  -.|.|.+++.
T Consensus         8 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~   87 (117)
T d1um5h1           8 PVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTS   87 (117)
T ss_dssp             CEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCC
Confidence            4567889999999999886533  57787642  10      0  01          11111  1  1  2489999999


Q ss_pred             CCCeEEEEEEec
Q psy15738        159 HSAGIYLCVANN  170 (187)
Q Consensus       159 ~d~g~y~C~~~n  170 (187)
                      +|++.|.|....
T Consensus        88 eDtAvYYCAr~~   99 (117)
T d1um5h1          88 EDSAVYYCARSS   99 (117)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcceEEEEeecc
Confidence            999999997543

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.28  E-value=0.013  Score=33.95  Aligned_cols=64  Identities=20%  Similarity=0.491  Sum_probs=42.5

Q ss_pred             eEEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee------C--C----------CCcEEE--e--C--cEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVP--NITWTRKN--NN------L--P----------GGEYSY--S--G--NSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~------~--~----------~~~~~~--~--~--~~l~i~~~~~  158 (187)
                      ...+.+|+++.|.|.+.|...-  .+.|++.-  ..      +  .          .++...  .  .  -.|.|.++..
T Consensus        10 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~   89 (122)
T d1vgeh1          10 AEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRP   89 (122)
T ss_dssp             CEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCC
Confidence            3567899999999999886533  47787732  10      0  1          111111  1  1  2488999999


Q ss_pred             CCCeEEEEEEec
Q psy15738        159 HSAGIYLCVANN  170 (187)
Q Consensus       159 ~d~g~y~C~~~n  170 (187)
                      +|++.|.|....
T Consensus        90 eDtA~YYCAr~~  101 (122)
T d1vgeh1          90 EDTAVYYCARDP  101 (122)
T ss_dssp             GGCEEEEEEEET
T ss_pred             CcceEEEEeecC
Confidence            999999997664

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.25  E-value=0.013  Score=33.89  Aligned_cols=64  Identities=22%  Similarity=0.490  Sum_probs=41.9

Q ss_pred             EEEecCCcEEEEeEeccCCC--CcEEEEeCC--eeC--------C----------CCcEEE--e--C--cEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPV--PNITWTRKN--NNL--------P----------GGEYSY--S--G--NSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~--~~~--------~----------~~~~~~--~--~--~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|...  -.+.|++.-  ..+        .          .++...  .  .  -.|.|.++..+
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~e   89 (120)
T d1pg7x1          10 ELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSN   89 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCC
Confidence            45788999999999987642  357787632  110        0          111111  1  1  24888999999


Q ss_pred             CCeEEEEEEecC
Q psy15738        160 SAGIYLCVANNM  171 (187)
Q Consensus       160 d~g~y~C~~~n~  171 (187)
                      |++.|.|.....
T Consensus        90 DtA~YYCAr~~~  101 (120)
T d1pg7x1          90 DSAVYYCAREDF  101 (120)
T ss_dssp             GCEEEEEEEECC
T ss_pred             cceEEEeeecCC
Confidence            999999986643

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=96.24  E-value=0.011  Score=34.16  Aligned_cols=62  Identities=19%  Similarity=0.374  Sum_probs=41.3

Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCC--eeC------C-----------CCcEEEe--C----cEEEEecCCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKN--NNL------P-----------GGEYSYS--G----NSLTVRHTNRHS  160 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~~------~-----------~~~~~~~--~----~~l~i~~~~~~d  160 (187)
                      ..+.+|+++.|.|.+.|....  .+.|++..  ..+      .           .++....  .    -.|.|.++..+|
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eD   89 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccc
Confidence            357889999999999886533  57788742  110      0           1122111  1    248999999999


Q ss_pred             CeEEEEEEe
Q psy15738        161 AGIYLCVAN  169 (187)
Q Consensus       161 ~g~y~C~~~  169 (187)
                      ++.|.|...
T Consensus        90 tA~YYCAr~   98 (120)
T d1dn0b1          90 TAVYYCARP   98 (120)
T ss_dssp             CEEEEEEEC
T ss_pred             ccEEEEEee
Confidence            999999543

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.21  E-value=0.0068  Score=34.93  Aligned_cols=63  Identities=19%  Similarity=0.481  Sum_probs=41.3

Q ss_pred             eEEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee------C--CC----------CcEEE--e--C--cEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVP--NITWTRKN--NN------L--PG----------GEYSY--S--G--NSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~------~--~~----------~~~~~--~--~--~~l~i~~~~~  158 (187)
                      ...+.+|+++.|.|.+.|...-  .+.|++.-  ..      +  ..          ++...  .  .  -.|.|.+++.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~   88 (118)
T d2jelh1           9 PELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccccc
Confidence            3567889999999999886533  47787632  10      0  01          11111  1  1  2588999999


Q ss_pred             CCCeEEEEEEe
Q psy15738        159 HSAGIYLCVAN  169 (187)
Q Consensus       159 ~d~g~y~C~~~  169 (187)
                      +|++.|.|...
T Consensus        89 eDTAvYYCAr~   99 (118)
T d2jelh1          89 EDSAIYYCARV   99 (118)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceeeeEEEe
Confidence            99999999543

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.21  E-value=0.016  Score=33.53  Aligned_cols=63  Identities=24%  Similarity=0.491  Sum_probs=41.5

Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee------C--CC----------CcEEE--eC----cEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKN--NN------L--PG----------GEYSY--SG----NSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~------~--~~----------~~~~~--~~----~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|..--  .+.|++.-  +-      +  ..          ++...  .+    -.|.|.+++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~e   89 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSE   89 (122)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeeccc
Confidence            456789999999999886532  47887732  10      0  01          11111  11    25888999999


Q ss_pred             CCeEEEEEEec
Q psy15738        160 SAGIYLCVANN  170 (187)
Q Consensus       160 d~g~y~C~~~n  170 (187)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (122)
T d1bz7b1          90 DTAIYYCTRGG  100 (122)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CceEEEeecCC
Confidence            99999997654

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.16  E-value=0.0043  Score=34.92  Aligned_cols=60  Identities=15%  Similarity=0.259  Sum_probs=37.9

Q ss_pred             CCcEEEEeEeccC-CC-CcEEEEeCCeeCCCCcE----E------EeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        113 GYSVTLECKADGN-PV-PNITWTRKNNNLPGGEY----S------YSGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       113 g~~~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~~----~------~~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      .+.+.|.|.+.|. |. ..+.|.++|........    .      ...+.|.+..-.......|.|.+....
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            4568899999996 43 36899999986543211    0      112345554333334568999999753

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.16  E-value=0.016  Score=33.89  Aligned_cols=64  Identities=22%  Similarity=0.497  Sum_probs=41.9

Q ss_pred             eEEEecCCcEEEEeEeccCCCC--cEEEEeCC--eeC--------C----------CCcEEE--e--C--cEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVP--NITWTRKN--NNL--------P----------GGEYSY--S--G--NSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~~--------~----------~~~~~~--~--~--~~l~i~~~~~  158 (187)
                      ...+.+|+++.|.|.+.|..-.  .+.|++.-  .-+        .          .++...  .  .  -.|.+.+++.
T Consensus         8 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~   87 (130)
T d1rhhb1           8 AEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRS   87 (130)
T ss_dssp             CEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCC
Confidence            3457889999999999886432  47787632  100        0          011111  1  1  2488899999


Q ss_pred             CCCeEEEEEEec
Q psy15738        159 HSAGIYLCVANN  170 (187)
Q Consensus       159 ~d~g~y~C~~~n  170 (187)
                      +|++.|.|....
T Consensus        88 eDtAvYyCAr~~   99 (130)
T d1rhhb1          88 DDTAVYYCARDF   99 (130)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CCcEEEEEEeec
Confidence            999999997654

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.16  E-value=0.028  Score=32.63  Aligned_cols=64  Identities=19%  Similarity=0.389  Sum_probs=41.6

Q ss_pred             eEEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee------C--C----------CCcEEE--eC----cEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVP--NITWTRKN--NN------L--P----------GGEYSY--SG----NSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~------~--~----------~~~~~~--~~----~~l~i~~~~~  158 (187)
                      ...+.+|+++.|.|.+.|...-  .+.|++..  ..      +  .          .++...  ..    -.|.+.+++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~   88 (124)
T d2b1hh1           9 AEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKP   88 (124)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecccc
Confidence            3467889999999999886532  46787621  10      0  0          111111  11    2588999999


Q ss_pred             CCCeEEEEEEec
Q psy15738        159 HSAGIYLCVANN  170 (187)
Q Consensus       159 ~d~g~y~C~~~n  170 (187)
                      +|++.|.|....
T Consensus        89 eDTA~YYCAR~~  100 (124)
T d2b1hh1          89 SDTALYYCARLG  100 (124)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccceEEEEeecC
Confidence            999999996443

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.15  E-value=0.0097  Score=34.28  Aligned_cols=64  Identities=20%  Similarity=0.409  Sum_probs=42.4

Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee------C--C----------CCcEEEe--C----cEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKN--NN------L--P----------GGEYSYS--G----NSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~------~--~----------~~~~~~~--~----~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|..-.  .+.|++.-  ..      +  .          .++....  +    -.|.|.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCC
Confidence            467889999999999886533  46787631  10      0  0          1111111  1    24889999999


Q ss_pred             CCeEEEEEEecC
Q psy15738        160 SAGIYLCVANNM  171 (187)
Q Consensus       160 d~g~y~C~~~n~  171 (187)
                      |++.|.|.....
T Consensus        90 DtAvYYCAr~~~  101 (118)
T d2fbjh1          90 DTALYYCARLHY  101 (118)
T ss_dssp             GCEEEEEEEEET
T ss_pred             cceEEEeeEecC
Confidence            999999986654

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.11  E-value=0.026  Score=32.80  Aligned_cols=63  Identities=21%  Similarity=0.451  Sum_probs=41.4

Q ss_pred             EEEecCCcEEEEeEeccCCC--CcEEEEeCC--ee------C--C----------CCcEEE--eC----cEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPV--PNITWTRKN--NN------L--P----------GGEYSY--SG----NSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~--~~------~--~----------~~~~~~--~~----~~l~i~~~~~~  159 (187)
                      -.+.+|+++.|.|.+.|..-  -.+.|++.-  .-      +  .          .++..+  .+    -.|.|.+++.+
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~e   89 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE   89 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCc
Confidence            45788999999999987542  357787632  10      0  0          111111  11    25889999999


Q ss_pred             CCeEEEEEEec
Q psy15738        160 SAGIYLCVANN  170 (187)
Q Consensus       160 d~g~y~C~~~n  170 (187)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (125)
T d1op3h1          90 DTAIYYCARKG  100 (125)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceeEeEeecc
Confidence            99999998654

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=96.11  E-value=0.017  Score=33.13  Aligned_cols=63  Identities=17%  Similarity=0.381  Sum_probs=41.8

Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCC--eeC-------CC----------CcEEE--eC----cEEEEecCCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKN--NNL-------PG----------GEYSY--SG----NSLTVRHTNRHS  160 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~~-------~~----------~~~~~--~~----~~l~i~~~~~~d  160 (187)
                      ..+.+|+++.|.|.+.|..-.  .+.|++.-  ..+       ..          ++...  .+    -.|.|.+++.+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eD   89 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeecc
Confidence            356889999999999886433  47787742  110       00          11111  11    248999999999


Q ss_pred             CeEEEEEEec
Q psy15738        161 AGIYLCVANN  170 (187)
Q Consensus       161 ~g~y~C~~~n  170 (187)
                      ++.|.|.-..
T Consensus        90 TAvYYCAr~~   99 (116)
T d1a2yb_          90 TARYYCARER   99 (116)
T ss_dssp             CEEEEEEEES
T ss_pred             ceEEEEEEeC
Confidence            9999998654

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.08  E-value=0.014  Score=33.49  Aligned_cols=63  Identities=19%  Similarity=0.440  Sum_probs=41.5

Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee------C--C----------CCcEEE--eC----cEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKN--NN------L--P----------GGEYSY--SG----NSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~------~--~----------~~~~~~--~~----~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|..-.  .+.|++.-  .-      +  .          .++...  ..    -.|.|.+++.+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~e   89 (117)
T d1jnhb1          10 ELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSE   89 (117)
T ss_dssp             EECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCC
Confidence            456789999999999986543  46787631  10      0  0          112211  11    24889999999


Q ss_pred             CCeEEEEEEec
Q psy15738        160 SAGIYLCVANN  170 (187)
Q Consensus       160 d~g~y~C~~~n  170 (187)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (117)
T d1jnhb1          90 DSAVYSCSRGR  100 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEEeecC
Confidence            99999996543

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=96.08  E-value=0.029  Score=32.20  Aligned_cols=63  Identities=27%  Similarity=0.537  Sum_probs=41.5

Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee------C-CC----------CcEEE--eC----cEEEEecCCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKN--NN------L-PG----------GEYSY--SG----NSLTVRHTNRHS  160 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~------~-~~----------~~~~~--~~----~~l~i~~~~~~d  160 (187)
                      ..+.+|+++.|.|.+.|..-.  .+.|++..  ..      + ..          ++...  ..    -.|.|.+++.+|
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eD   89 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSED   89 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCc
Confidence            356789999999999887533  57787742  10      0 00          11111  11    258899999999


Q ss_pred             CeEEEEEEec
Q psy15738        161 AGIYLCVANN  170 (187)
Q Consensus       161 ~g~y~C~~~n  170 (187)
                      ++.|.|....
T Consensus        90 tA~YyCAr~~   99 (118)
T d1lo4h1          90 TAIYYCARGT   99 (118)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEecccC
Confidence            9999997553

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.018  Score=29.82  Aligned_cols=62  Identities=18%  Similarity=0.311  Sum_probs=36.1

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEeC
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK  187 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~~  187 (187)
                      -+.+.|.|.      ..|.|++++...    .......+.+-+....-.|.|.|.+.....   .....|.|.|+
T Consensus         9 e~~V~L~Cn------~si~W~k~~~~~----~~~~~k~lnLG~~~~DPRG~Y~C~~~e~~~---~k~~~lQVyYR   70 (74)
T d1xiwb_           9 EDRVFVNCN------TSITWVEGTVGT----LLSDITRLDLGKRILDPRGIYRCNGTDIYK---DKESTVQVHYR   70 (74)
T ss_dssp             TTEEEEECS------SCEEEEEECCCE----EEGGGTEEEEEEGGGCCEEEEEEC-----------CEEEEEEEE
T ss_pred             CCeEEEEcc------CeeEEecCCccc----ccCCccEeecCCcccCCCcceEeCCccccc---ccCccEEEEEE
Confidence            458899994      469999976321    111335677777666668999996553222   23445777663

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.04  E-value=0.02  Score=33.43  Aligned_cols=63  Identities=27%  Similarity=0.497  Sum_probs=41.4

Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCCe--eC--------C----------CCcEEE--e----CcEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKNN--NL--------P----------GGEYSY--S----GNSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~~--~~--------~----------~~~~~~--~----~~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|..-.  .+.|++.-.  -+        .          .++...  .    .-.|.|.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~e   89 (128)
T d2nxyd1          10 EVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSD   89 (128)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecccc
Confidence            457889999999999886543  366765321  00        0          111111  1    124888899999


Q ss_pred             CCeEEEEEEec
Q psy15738        160 SAGIYLCVANN  170 (187)
Q Consensus       160 d~g~y~C~~~n  170 (187)
                      |++.|.|....
T Consensus        90 DTA~YYCAr~~  100 (128)
T d2nxyd1          90 DTAVYFCAGVY  100 (128)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CceEEEEeEEe
Confidence            99999998654

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=96.02  E-value=0.025  Score=32.63  Aligned_cols=63  Identities=19%  Similarity=0.399  Sum_probs=41.0

Q ss_pred             EEEecCCcEEEEeEeccCCC--C--cEEEEeCC--eeC-------CCC----------cEEE--eC----cEEEEecCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPV--P--NITWTRKN--NNL-------PGG----------EYSY--SG----NSLTVRHTNR  158 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~--p--~~~W~~~~--~~~-------~~~----------~~~~--~~----~~l~i~~~~~  158 (187)
                      ..+.+|+++.|.|.+.|...  .  .+.|++..  ..+       ..+          +...  .+    -.|.|.+++.
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~   89 (120)
T d1ai1h1          10 AVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTN   89 (120)
T ss_dssp             SEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCG
T ss_pred             ceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeec
Confidence            35678999999999987642  2  46787742  110       111          1111  11    2488999999


Q ss_pred             CCCeEEEEEEec
Q psy15738        159 HSAGIYLCVANN  170 (187)
Q Consensus       159 ~d~g~y~C~~~n  170 (187)
                      +|++.|.|....
T Consensus        90 eDtAvYYCAr~~  101 (120)
T d1ai1h1          90 EDTAMYYCSREN  101 (120)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cceeEEEEEecC
Confidence            999999997554

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.00  E-value=0.017  Score=33.55  Aligned_cols=64  Identities=27%  Similarity=0.485  Sum_probs=42.4

Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee------C--CC----------CcEEE--e--C--cEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKN--NN------L--PG----------GEYSY--S--G--NSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~------~--~~----------~~~~~--~--~--~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|....  .+.|++..  ..      +  ..          ++...  .  .  -.|.+.++..+
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~e   88 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSE   88 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCC
Confidence            457789999999999886533  57888742  11      0  11          11111  1  1  24888899999


Q ss_pred             CCeEEEEEEecC
Q psy15738        160 SAGIYLCVANNM  171 (187)
Q Consensus       160 d~g~y~C~~~n~  171 (187)
                      |++.|.|.....
T Consensus        89 DtAvYYCAr~~~  100 (124)
T d1zvya1          89 DTAIYTCGATRK  100 (124)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cceEEEEeeccc
Confidence            999999986543

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.00  E-value=0.0017  Score=37.91  Aligned_cols=62  Identities=18%  Similarity=0.241  Sum_probs=37.7

Q ss_pred             ecCCcEEEEeEeccC-CC---CcEEEEeCCeeCCCCcE----EEeC------cEEEEecCCCCCCeEEEEEEecCC
Q psy15738        111 KKGYSVTLECKADGN-PV---PNITWTRKNNNLPGGEY----SYSG------NSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~-p~---p~~~W~~~~~~~~~~~~----~~~~------~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      ..+..+.|.|.+.|. |.   ..+.|.+++........    ...+      +.|.+..-.......|.|.+....
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTT
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECC
Confidence            346788999999885 42   36789999986643211    1111      233332222223568999999754

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=95.98  E-value=0.028  Score=32.79  Aligned_cols=64  Identities=22%  Similarity=0.484  Sum_probs=41.5

Q ss_pred             EEEecCCcEEEEeEeccCCC--CcEEEEeCCe--e------C--CC----------CcEEE--e--C--cEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPV--PNITWTRKNN--N------L--PG----------GEYSY--S--G--NSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~~--~------~--~~----------~~~~~--~--~--~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|...  -.+.|++...  .      +  ..          ++...  .  .  -.|.|.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~e   89 (127)
T d2fb4h1          10 GVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPE   89 (127)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeec
Confidence            35678999999999987642  3577876321  0      0  01          11111  1  1  24889999999


Q ss_pred             CCeEEEEEEecC
Q psy15738        160 SAGIYLCVANNM  171 (187)
Q Consensus       160 d~g~y~C~~~n~  171 (187)
                      |++.|.|.....
T Consensus        90 DTA~YYCAr~~~  101 (127)
T d2fb4h1          90 DTGVYFCARDGG  101 (127)
T ss_dssp             GCEEEEEEEECS
T ss_pred             ceeEEEEEEecC
Confidence            999999986543

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.97  E-value=0.0085  Score=34.43  Aligned_cols=62  Identities=24%  Similarity=0.495  Sum_probs=40.6

Q ss_pred             EEEecCCcEEEEeEeccCC--CCcEEEEeC--Cee------C--CC----------CcEEEe----C--cEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNP--VPNITWTRK--NNN------L--PG----------GEYSYS----G--NSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p--~p~~~W~~~--~~~------~--~~----------~~~~~~----~--~~l~i~~~~~~  159 (187)
                      ..+.+|++++|.|.+.|..  .-.+.|++.  |..      +  ..          ++....    .  ..|.|.++..+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e   89 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE   89 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC
Confidence            4578899999999988753  235778763  111      0  01          111111    1  24899999999


Q ss_pred             CCeEEEEEEe
Q psy15738        160 SAGIYLCVAN  169 (187)
Q Consensus       160 d~g~y~C~~~  169 (187)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (115)
T d1f3dh1          90 DSAVYYCAND   99 (115)
T ss_dssp             GCEEEEEEEC
T ss_pred             CcEEEEEecc
Confidence            9999999654

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.97  E-value=0.014  Score=33.83  Aligned_cols=65  Identities=22%  Similarity=0.454  Sum_probs=42.1

Q ss_pred             EEEecCCcEEEEeEeccCCC--CcEEEEeCC--eeC--------CC----------CcEEE--e--C--cEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPV--PNITWTRKN--NNL--------PG----------GEYSY--S--G--NSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~--~~~--------~~----------~~~~~--~--~--~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|..-  -.+.|++..  ..+        ..          ++...  .  .  -.|.|.++..+
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence            45688999999999987542  247787632  110        00          11111  1  1  25899999999


Q ss_pred             CCeEEEEEEecCC
Q psy15738        160 SAGIYLCVANNMV  172 (187)
Q Consensus       160 d~g~y~C~~~n~~  172 (187)
                      |++.|.|......
T Consensus        90 DtAvYYCAr~~~~  102 (121)
T d1ol0a_          90 DTAVYYCAREPRI  102 (121)
T ss_dssp             GCEEEEEEECCST
T ss_pred             cceEEEEEEecCc
Confidence            9999999765443

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.96  E-value=0.001  Score=37.89  Aligned_cols=63  Identities=14%  Similarity=0.228  Sum_probs=38.7

Q ss_pred             CCcEEEEeEeccCCC--CcEEEEeCCeeCCCCcEE----------EeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738        113 GYSVTLECKADGNPV--PNITWTRKNNNLPGGEYS----------YSGNSLTVRHTNRHSAGIYLCVANNMVGSS  175 (187)
Q Consensus       113 g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  175 (187)
                      +..+.|.|.+.|..+  ..|.|.++|..+......          ...+.|.+......+...|.|.+.......
T Consensus        20 ~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~~   94 (104)
T d1nfde2          20 TNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV   94 (104)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             CCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCcE
Confidence            566889999988643  369999999865432110          011233343333334567999999875443

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=95.95  E-value=0.0028  Score=35.53  Aligned_cols=57  Identities=14%  Similarity=0.219  Sum_probs=35.0

Q ss_pred             CCcEEEEeEeccCCCC--cEEEEeCCeeCCCC--------c-EE------EeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        113 GYSVTLECKADGNPVP--NITWTRKNNNLPGG--------E-YS------YSGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~--------~-~~------~~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      ...+.|.|.+.|..+.  .+.|.+|+..+...        . ..      ...+.|.+   ...+...|+|.+....
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~ytC~V~H~s   87 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYV---DGGLEHVYSCRVKGIA   87 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEE---CTTCGGGEEEEEEEGG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEE---CCCCCCEEEEEEEeCC
Confidence            3478899999998655  57899988654211        0 00      01123333   4445568999998643

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=95.95  E-value=0.021  Score=33.33  Aligned_cols=61  Identities=21%  Similarity=0.368  Sum_probs=40.4

Q ss_pred             EEecCCcEEEEeEeccCCC---CcEEEEeC--CeeC-------CC----------CcEE--Ee----CcEEEEecCCCCC
Q psy15738        109 EVKKGYSVTLECKADGNPV---PNITWTRK--NNNL-------PG----------GEYS--YS----GNSLTVRHTNRHS  160 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~---p~~~W~~~--~~~~-------~~----------~~~~--~~----~~~l~i~~~~~~d  160 (187)
                      .+.+|+++.|.|.+.|..-   -.+.|++.  |..+       ..          ++..  ..    .-.|.|.+++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eD   90 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTED   90 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccccc
Confidence            5678999999999988643   24789873  2111       00          0110  01    1258999999999


Q ss_pred             CeEEEEEEe
Q psy15738        161 AGIYLCVAN  169 (187)
Q Consensus       161 ~g~y~C~~~  169 (187)
                      ++.|.|...
T Consensus        91 tAvYyCAr~   99 (127)
T d3cx5j1          91 TATYYCARS   99 (127)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeeee
Confidence            999999754

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.93  E-value=0.012  Score=33.77  Aligned_cols=63  Identities=19%  Similarity=0.422  Sum_probs=40.6

Q ss_pred             eEEEecCCcEEEEeEeccCCC--CcEEEEeC--CeeC--------C----------CCcEEE--e--C--cEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPV--PNITWTRK--NNNL--------P----------GGEYSY--S--G--NSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~--p~~~W~~~--~~~~--------~----------~~~~~~--~--~--~~l~i~~~~~  158 (187)
                      ...+.+|+++.|.|.+.|...  -.+.|++.  |..+        .          .++...  .  .  -.|.|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~   88 (117)
T d1mfah1           9 TVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTS   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCC
Confidence            356788999999999987642  24677763  1110        0          111111  1  1  2488999999


Q ss_pred             CCCeEEEEEEe
Q psy15738        159 HSAGIYLCVAN  169 (187)
Q Consensus       159 ~d~g~y~C~~~  169 (187)
                      +|++.|.|...
T Consensus        89 eDtAvYYCAr~   99 (117)
T d1mfah1          89 EDSAVYYCTRG   99 (117)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEecc
Confidence            99999999643

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.91  E-value=0.02  Score=33.34  Aligned_cols=65  Identities=20%  Similarity=0.410  Sum_probs=41.6

Q ss_pred             eEEEecCCcEEEEeEeccCCCC--cEEEEeCC--eeC--------C----------CCcEEE--e--C--cEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVP--NITWTRKN--NNL--------P----------GGEYSY--S--G--NSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~~--------~----------~~~~~~--~--~--~~l~i~~~~~  158 (187)
                      .-.+.+|+++.|.|.+.|....  .+.|++.-  ..+        .          .++...  .  .  -.|.|.+++.
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            3467889999999999876433  46787632  110        1          011111  1  1  2389999999


Q ss_pred             CCCeEEEEEEecC
Q psy15738        159 HSAGIYLCVANNM  171 (187)
Q Consensus       159 ~d~g~y~C~~~n~  171 (187)
                      +|++.|.|.....
T Consensus        88 eDTAvYYCAr~~~  100 (126)
T d1rjca1          88 EDTAMYYCAADTS  100 (126)
T ss_dssp             GGCEEEEEEECCT
T ss_pred             ccCceeEEEeecc
Confidence            9999999986543

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=95.90  E-value=0.038  Score=32.42  Aligned_cols=64  Identities=22%  Similarity=0.430  Sum_probs=42.3

Q ss_pred             EEEecCCcEEEEeEeccCCC--CcEEEEeCC--eeC--------C----------CCcEEEe------CcEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPV--PNITWTRKN--NNL--------P----------GGEYSYS------GNSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~--~~~--------~----------~~~~~~~------~~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|..-  -.+.|++.-  .-+        .          .++....      .-.|.|.+++.+
T Consensus        10 ~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~e   89 (135)
T d1ieha_          10 GLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSE   89 (135)
T ss_dssp             CEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSS
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcc
Confidence            35678999999999988643  347787632  110        0          1111111      125899999999


Q ss_pred             CCeEEEEEEecC
Q psy15738        160 SAGIYLCVANNM  171 (187)
Q Consensus       160 d~g~y~C~~~n~  171 (187)
                      |++.|.|.....
T Consensus        90 DTAvYYCAr~~~  101 (135)
T d1ieha_          90 DTAVYYCAKYSG  101 (135)
T ss_dssp             SCEEEEEEEBSS
T ss_pred             cceeeEEEEecC
Confidence            999999976643

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.89  E-value=0.034  Score=32.60  Aligned_cols=64  Identities=23%  Similarity=0.507  Sum_probs=41.6

Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee------C--C----------CCcEEE--e----CcEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKN--NN------L--P----------GGEYSY--S----GNSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~------~--~----------~~~~~~--~----~~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|...-  .+.|++.-  .-      +  .          .++...  .    .-.|.+.+++.+
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~e   88 (133)
T d1rzfh1           9 EVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSD   88 (133)
T ss_dssp             EEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCC
Confidence            467889999999999886433  46777621  10      0  0          111111  1    124888899999


Q ss_pred             CCeEEEEEEecC
Q psy15738        160 SAGIYLCVANNM  171 (187)
Q Consensus       160 d~g~y~C~~~n~  171 (187)
                      |++.|.|.....
T Consensus        89 DtA~YYCAr~~~  100 (133)
T d1rzfh1          89 DTAVYYCASNSI  100 (133)
T ss_dssp             GCEEEEEEEEEC
T ss_pred             CCEEEEeeeccC
Confidence            999999976543

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.88  E-value=0.011  Score=34.00  Aligned_cols=63  Identities=19%  Similarity=0.426  Sum_probs=40.8

Q ss_pred             EEecCCcEEEEeEeccCCCC--cEEEEeC--CeeC-------CCC----------cEE--Ee--C--cEEEEecCCCCCC
Q psy15738        109 EVKKGYSVTLECKADGNPVP--NITWTRK--NNNL-------PGG----------EYS--YS--G--NSLTVRHTNRHSA  161 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p--~~~W~~~--~~~~-------~~~----------~~~--~~--~--~~l~i~~~~~~d~  161 (187)
                      .+.+|++++|.|.+.|..-.  .+.|++.  |..+       ..+          +..  ..  .  -.|.+.+++.+|+
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDT   90 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDT   90 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCC
T ss_pred             eECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCC
Confidence            45789999999999886533  4778763  2111       111          000  01  1  2488899999999


Q ss_pred             eEEEEEEecC
Q psy15738        162 GIYLCVANNM  171 (187)
Q Consensus       162 g~y~C~~~n~  171 (187)
                      +.|.|.....
T Consensus        91 AvYyCAr~~~  100 (116)
T d1fn4b1          91 GTYYCTRDLY  100 (116)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEEEEeecC
Confidence            9999976543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=95.86  E-value=0.021  Score=32.80  Aligned_cols=64  Identities=23%  Similarity=0.459  Sum_probs=41.2

Q ss_pred             eEEEecCCcEEEEeEeccCCC--CcEEEEeCC--ee------C--CC----------CcEEE--e--C--cEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPV--PNITWTRKN--NN------L--PG----------GEYSY--S--G--NSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~--~~------~--~~----------~~~~~--~--~--~~l~i~~~~~  158 (187)
                      ...+.+|+++.|.|.+.|..-  -.+.|++.-  .-      +  ..          ++...  .  .  -.|.|.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~   88 (118)
T d1ct8b1           9 AVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTT   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCC
Confidence            356788999999999987542  246776631  10      0  01          11111  1  1  2588889999


Q ss_pred             CCCeEEEEEEec
Q psy15738        159 HSAGIYLCVANN  170 (187)
Q Consensus       159 ~d~g~y~C~~~n  170 (187)
                      +|++.|.|....
T Consensus        89 eDtAvYYCAr~~  100 (118)
T d1ct8b1          89 EDSAIYYCARYR  100 (118)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CcceEEEEeeec
Confidence            999999997653

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.85  E-value=0.017  Score=33.70  Aligned_cols=64  Identities=16%  Similarity=0.401  Sum_probs=41.5

Q ss_pred             eEEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee------C--C----------CCcEEE--e--C--cEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVP--NITWTRKN--NN------L--P----------GGEYSY--S--G--NSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~------~--~----------~~~~~~--~--~--~~l~i~~~~~  158 (187)
                      ...+.+|+++.|.|.+.|..--  .+.|++.-  ..      +  .          .++...  .  .  -.|.|.+++.
T Consensus         9 ~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~   88 (125)
T d1rihh1           9 NELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTS   88 (125)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCc
Confidence            3567889999999999876432  46777631  10      0  0          111111  1  1  2488889999


Q ss_pred             CCCeEEEEEEec
Q psy15738        159 HSAGIYLCVANN  170 (187)
Q Consensus       159 ~d~g~y~C~~~n  170 (187)
                      +|++.|.|....
T Consensus        89 eDtAvYYCAR~~  100 (125)
T d1rihh1          89 EDSAVYYCARES  100 (125)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEEeeeC
Confidence            999999998654

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.82  E-value=0.006  Score=34.30  Aligned_cols=61  Identities=15%  Similarity=0.169  Sum_probs=38.1

Q ss_pred             cCCcEEEEeEeccCCC--CcEEEEeCCeeCCC---CcE-----EEeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        112 KGYSVTLECKADGNPV--PNITWTRKNNNLPG---GEY-----SYSGNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~---~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      .+..+.|.|.+.|..+  ..|.|.+++.....   ...     ....+.|.+..-.. ..+.|.|.+.....
T Consensus        19 ~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~   89 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKS   89 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGG
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCC
Confidence            4678899999998633  36899877754211   001     11224566654444 35789999997644

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=95.80  E-value=0.032  Score=32.52  Aligned_cols=61  Identities=15%  Similarity=0.369  Sum_probs=39.5

Q ss_pred             EEecCCcEEEEeEeccCC--CC--cEEEEeC--CeeC-------C----------CCcEEE--e--C--cEEEEecCCCC
Q psy15738        109 EVKKGYSVTLECKADGNP--VP--NITWTRK--NNNL-------P----------GGEYSY--S--G--NSLTVRHTNRH  159 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p--~p--~~~W~~~--~~~~-------~----------~~~~~~--~--~--~~l~i~~~~~~  159 (187)
                      .+.+|+++.|.|.+.|..  ..  .+.|++.  |..+       .          .++...  .  .  -.|.|.++..+
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~e   90 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTS   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccccc
Confidence            567899999999988753  22  3568753  1111       0          112211  1  1  25899999999


Q ss_pred             CCeEEEEEEe
Q psy15738        160 SAGIYLCVAN  169 (187)
Q Consensus       160 d~g~y~C~~~  169 (187)
                      |++.|.|...
T Consensus        91 DtAvYyCAr~  100 (126)
T d1etzb1          91 DTATYHCARR  100 (126)
T ss_dssp             GCEEEEEEEE
T ss_pred             ccceEEEEEe
Confidence            9999999754

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.77  E-value=0.035  Score=32.24  Aligned_cols=63  Identities=19%  Similarity=0.455  Sum_probs=41.5

Q ss_pred             eEEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee-------C-C----------CCcEEE--e----CcEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVP--NITWTRKN--NN-------L-P----------GGEYSY--S----GNSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~-------~-~----------~~~~~~--~----~~~l~i~~~~~  158 (187)
                      ...+.+|+++.|.|.+.|....  .+.|++.-  ..       . .          .++...  .    .-.|.|.++..
T Consensus         8 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~   87 (126)
T d1lmka1           8 TELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTS   87 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCC
Confidence            3567889999999999886533  46787621  10       0 1          111111  1    12588999999


Q ss_pred             CCCeEEEEEEe
Q psy15738        159 HSAGIYLCVAN  169 (187)
Q Consensus       159 ~d~g~y~C~~~  169 (187)
                      +|++.|.|...
T Consensus        88 eDTAvYYCAr~   98 (126)
T d1lmka1          88 EDSAVYYCARG   98 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeec
Confidence            99999999753

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.75  E-value=0.03  Score=32.22  Aligned_cols=63  Identities=22%  Similarity=0.476  Sum_probs=41.4

Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee------C--CC----------CcEEE--e----CcEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKN--NN------L--PG----------GEYSY--S----GNSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~------~--~~----------~~~~~--~----~~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|....  .+.|++.-  .-      +  ..          ++...  .    .-.|.+.+++.+
T Consensus        10 ~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~e   89 (120)
T d1ad9b1          10 EVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSE   89 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCC
Confidence            467889999999999886533  47787631  10      0  11          11111  1    124888899999


Q ss_pred             CCeEEEEEEec
Q psy15738        160 SAGIYLCVANN  170 (187)
Q Consensus       160 d~g~y~C~~~n  170 (187)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (120)
T d1ad9b1          90 DTAFYFCAREK  100 (120)
T ss_dssp             GCEEEEEEEEB
T ss_pred             cceEEEEEEcC
Confidence            99999997654

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.73  E-value=0.026  Score=32.56  Aligned_cols=62  Identities=26%  Similarity=0.455  Sum_probs=41.1

Q ss_pred             EEEecCCcEEEEeEeccCC--CCcEEEEeCC--eeC--------CC----------CcEEEe----C--cEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNP--VPNITWTRKN--NNL--------PG----------GEYSYS----G--NSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~--~~~--------~~----------~~~~~~----~--~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|..  .-.+.|++..  ..+        ..          ++....    .  -.|.|.+++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~e   89 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPE   89 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecccc
Confidence            4678999999999998764  3357787642  100        00          111111    1  24888999999


Q ss_pred             CCeEEEEEEe
Q psy15738        160 SAGIYLCVAN  169 (187)
Q Consensus       160 d~g~y~C~~~  169 (187)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d2p49b1          90 DTATYYCAAG   99 (121)
T ss_dssp             GCEEEEEEES
T ss_pred             ceeEEeeecc
Confidence            9999999865

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.66  E-value=0.012  Score=33.05  Aligned_cols=61  Identities=21%  Similarity=0.243  Sum_probs=35.1

Q ss_pred             cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCC---cE-----EEeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGG---EY-----SYSGNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~---~~-----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      .++.+.|.|.+.|..+.  .|.|..++......   ..     ....+.|.+..-.. +.+.|.|.+....+
T Consensus        19 ~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~~   89 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPAS   89 (102)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGGG
T ss_pred             CCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHc-CCceEEEEEEECCC
Confidence            46789999999997433  68997666432100   00     11124455555443 25689999998644

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.66  E-value=0.02  Score=33.18  Aligned_cols=64  Identities=23%  Similarity=0.502  Sum_probs=41.7

Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee------C--C----------CCcEEEe----C--cEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKN--NN------L--P----------GGEYSYS----G--NSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~------~--~----------~~~~~~~----~--~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|..-.  .+.|++..  ..      +  .          .++....    .  -.|.|.+++.+
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE   89 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC
Confidence            356789999999999886432  46787632  10      0  0          1111111    1  24889999999


Q ss_pred             CCeEEEEEEecC
Q psy15738        160 SAGIYLCVANNM  171 (187)
Q Consensus       160 d~g~y~C~~~n~  171 (187)
                      |++.|.|.....
T Consensus        90 DtAvYYCAr~~~  101 (123)
T d1mqkh_          90 DTAMYYCVRHEY  101 (123)
T ss_dssp             GCEEEEEEEEET
T ss_pred             cccceeEEecCC
Confidence            999999976543

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.61  E-value=0.0046  Score=34.90  Aligned_cols=61  Identities=11%  Similarity=0.205  Sum_probs=36.0

Q ss_pred             cCCcEEEEeEeccC-CC---CcEEEEeCCeeCCCCcE----E------EeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        112 KGYSVTLECKADGN-PV---PNITWTRKNNNLPGGEY----S------YSGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       112 ~g~~~~l~C~~~g~-p~---p~~~W~~~~~~~~~~~~----~------~~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      .+.++.|.|.+.+. |.   ..+.|.++|........    .      ...+.|.+..-.....-.|.|.+....
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            45678899999885 43   36789999876543311    0      111233332222123456999999754

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=95.59  E-value=0.034  Score=32.00  Aligned_cols=63  Identities=22%  Similarity=0.375  Sum_probs=41.2

Q ss_pred             EEEecCCcEEEEeEeccCCCC---cEEEEeC--CeeC-------CC----------CcEEEe----C--cEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNPVP---NITWTRK--NNNL-------PG----------GEYSYS----G--NSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p---~~~W~~~--~~~~-------~~----------~~~~~~----~--~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|..-.   .+.|++.  |.-+       ..          ++....    .  -.|.+.+++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~e   89 (119)
T d1ncwh1          10 GLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTE   89 (119)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccC
Confidence            357789999999999987542   3678762  2110       00          111111    1  24889999999


Q ss_pred             CCeEEEEEEec
Q psy15738        160 SAGIYLCVANN  170 (187)
Q Consensus       160 d~g~y~C~~~n  170 (187)
                      |+..|.|....
T Consensus        90 DTAvYYCAr~~  100 (119)
T d1ncwh1          90 DTATYYCAGLL  100 (119)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CceEEEEeEec
Confidence            99999997554

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.53  E-value=0.014  Score=33.49  Aligned_cols=63  Identities=22%  Similarity=0.447  Sum_probs=40.5

Q ss_pred             EEEecCCcEEEEeEeccCC--CCcEEEEeCC--ee------C--CCC----------cEEEe------CcEEEEecCCCC
Q psy15738        108 VEVKKGYSVTLECKADGNP--VPNITWTRKN--NN------L--PGG----------EYSYS------GNSLTVRHTNRH  159 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~--~~------~--~~~----------~~~~~------~~~l~i~~~~~~  159 (187)
                      ..+.+|+++.|.|.+.|..  .-.+.|++.-  ..      +  ...          +....      .-.|.+.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~e   89 (117)
T d1b2wh1          10 GVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRPE   89 (117)
T ss_dssp             CEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccCC
Confidence            4678999999999998753  2346677631  10      1  111          11111      125889999999


Q ss_pred             CCeEEEEEEec
Q psy15738        160 SAGIYLCVANN  170 (187)
Q Consensus       160 d~g~y~C~~~n  170 (187)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (117)
T d1b2wh1          90 DTAVYYCARGF  100 (117)
T ss_dssp             GCEEEECCEES
T ss_pred             cceEEEEcccc
Confidence            99999996543

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0027  Score=36.01  Aligned_cols=63  Identities=14%  Similarity=0.147  Sum_probs=37.7

Q ss_pred             ecCCcEEEEeEeccC-CC---CcEEEEeCCeeCCCCcE----EEe------CcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738        111 KKGYSVTLECKADGN-PV---PNITWTRKNNNLPGGEY----SYS------GNSLTVRHTNRHSAGIYLCVANNMVG  173 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~-p~---p~~~W~~~~~~~~~~~~----~~~------~~~l~i~~~~~~d~g~y~C~~~n~~g  173 (187)
                      ..++.+.|.|.+.|. |.   ..+.|.+++........    ...      .+.|.+..-.......|.|.+.....
T Consensus        16 ~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   92 (105)
T d1l6xa1          16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL   92 (105)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             ccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCC
Confidence            457788999999886 33   35679999876543321    111      12333332222235589999998643

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.49  E-value=0.036  Score=31.95  Aligned_cols=63  Identities=19%  Similarity=0.352  Sum_probs=41.4

Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCC--ee------C----CCCcEE----------E--e----CcEEEEecCC
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKN--NN------L----PGGEYS----------Y--S----GNSLTVRHTN  157 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~------~----~~~~~~----------~--~----~~~l~i~~~~  157 (187)
                      ..+.+|+++.|.|.+.|....  .+.|++..  ..      +    ......          .  .    .-.|.+.+++
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L~   89 (121)
T d1nfdf1          10 DLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLR   89 (121)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESCC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecccC
Confidence            467899999999999886533  46787732  11      0    011110          0  0    1248999999


Q ss_pred             CCCCeEEEEEEec
Q psy15738        158 RHSAGIYLCVANN  170 (187)
Q Consensus       158 ~~d~g~y~C~~~n  170 (187)
                      .+|++.|.|....
T Consensus        90 ~eDTAvYYCAr~~  102 (121)
T d1nfdf1          90 VDDTAIYYCTRAG  102 (121)
T ss_dssp             GGGCEECEEEEEE
T ss_pred             CCcceEEEEeccC
Confidence            9999999997653

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.035  Score=30.59  Aligned_cols=55  Identities=7%  Similarity=-0.028  Sum_probs=26.5

Q ss_pred             ceEEcc-CCCCeeEEEeC-eEeeeccEEEeecc--ccccceeEEEEEecccceeEEeec
Q psy15738         27 AIMFAD-SRPESTFWIFG-KLITSCSYIILATS--LLHYLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus        27 ~~~~~~-~~~~~~~w~~~-~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      .|.+.+ .+.....|+.+ ..+..........+  .+......+.+...+...|+|...
T Consensus        22 ~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~~~~~~~~tC~V~   80 (95)
T d1dr9a2          22 ICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIK   80 (95)
T ss_dssp             EEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEE
T ss_pred             EEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEccCCccceEEEEEE
Confidence            566654 24447777744 44443333222211  111222245566666778888443

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=95.40  E-value=0.032  Score=32.54  Aligned_cols=64  Identities=28%  Similarity=0.581  Sum_probs=41.9

Q ss_pred             EEEecCCcEEEEeEeccCCC--CcEEEEeCC--ee---C---------CC-----------CcEEEe------CcEEEEe
Q psy15738        108 VEVKKGYSVTLECKADGNPV--PNITWTRKN--NN---L---------PG-----------GEYSYS------GNSLTVR  154 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~--~~---~---------~~-----------~~~~~~------~~~l~i~  154 (187)
                      ..+.+|+++.|.|.+.|...  -.+.|++..  ..   +         ..           ++....      .-.|.|.
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~   89 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMN   89 (127)
T ss_dssp             EECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred             ceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeee
Confidence            45678999999999988643  247788632  10   0         00           111111      1258899


Q ss_pred             cCCCCCCeEEEEEEecC
Q psy15738        155 HTNRHSAGIYLCVANNM  171 (187)
Q Consensus       155 ~~~~~d~g~y~C~~~n~  171 (187)
                      ++..+|++.|.|.....
T Consensus        90 ~l~~eDtAvYYCAr~~~  106 (127)
T d1i3ua_          90 SLKPEDTAVYYCAAKTT  106 (127)
T ss_dssp             SCCGGGCEEEEEEEESC
T ss_pred             cccccceeEEEEEEEee
Confidence            99999999999986643

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0037  Score=35.33  Aligned_cols=63  Identities=17%  Similarity=0.223  Sum_probs=36.4

Q ss_pred             EecCCcEEEEeEeccCCCC----cEEEEeCCeeCCCCcEE----Ee------CcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        110 VKKGYSVTLECKADGNPVP----NITWTRKNNNLPGGEYS----YS------GNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~p~p----~~~W~~~~~~~~~~~~~----~~------~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      +..++.++|.|.+.|..+.    .+.|.+++.........    ..      .+.|.+..-.......|.|.+....
T Consensus        13 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~   89 (103)
T d1fp5a1          13 LFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPH   89 (103)
T ss_dssp             HHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             HhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECC
Confidence            3446778999999986432    46788887655433211    11      1223332222223568999999854

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.32  E-value=0.04  Score=31.87  Aligned_cols=64  Identities=22%  Similarity=0.451  Sum_probs=41.9

Q ss_pred             eEEEecCCcEEEEeEeccCCCC--cEEEEeCC--eeC--------CC----------CcEEE--e--C--cEEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPVP--NITWTRKN--NNL--------PG----------GEYSY--S--G--NSLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~~--------~~----------~~~~~--~--~--~~l~i~~~~~  158 (187)
                      ...+.+|+++.|.|.+.|..-.  .+.|++.-  .-+        ..          ++...  .  .  -.|.+.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~   88 (124)
T d1yedb1           9 PELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKS   88 (124)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCG
T ss_pred             CceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCC
Confidence            3457889999999999886533  47787632  110        01          11111  1  1  2488999999


Q ss_pred             CCCeEEEEEEec
Q psy15738        159 HSAGIYLCVANN  170 (187)
Q Consensus       159 ~d~g~y~C~~~n  170 (187)
                      +|++.|.|....
T Consensus        89 eDTAvYYCAR~~  100 (124)
T d1yedb1          89 EDSAVYFCTRWG  100 (124)
T ss_dssp             GGCEEEEEEECC
T ss_pred             CcceEEEecccC
Confidence            999999997554

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=95.28  E-value=0.026  Score=32.60  Aligned_cols=64  Identities=22%  Similarity=0.448  Sum_probs=41.9

Q ss_pred             EEEecCCcEEEEeEeccCCCC--cEEEEeCC--eeC-------C-------------CCcEEEe--C----cEEEEecCC
Q psy15738        108 VEVKKGYSVTLECKADGNPVP--NITWTRKN--NNL-------P-------------GGEYSYS--G----NSLTVRHTN  157 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~--~~~-------~-------------~~~~~~~--~----~~l~i~~~~  157 (187)
                      ..+.+|+++.|.|.+.|....  .+.|++.-  ..+       .             .++....  .    -.|.|.+++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~   89 (122)
T d1q9rb1          10 GLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR   89 (122)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeec
Confidence            357789999999999886433  47787632  110       0             0111111  1    248889999


Q ss_pred             CCCCeEEEEEEecC
Q psy15738        158 RHSAGIYLCVANNM  171 (187)
Q Consensus       158 ~~d~g~y~C~~~n~  171 (187)
                      .+|++.|.|.....
T Consensus        90 ~eDTAvYYCar~~~  103 (122)
T d1q9rb1          90 AEDSATYYCARDHD  103 (122)
T ss_dssp             GGGCEEEEEEECCC
T ss_pred             cCcceEEEEEecCC
Confidence            99999999986543

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.26  E-value=0.038  Score=32.29  Aligned_cols=63  Identities=24%  Similarity=0.441  Sum_probs=41.2

Q ss_pred             eEEEecCCcEEEEeEeccCCC--CcEEEEeCC--eeC--------CC----------CcEEE--e--Cc--EEEEecCCC
Q psy15738        107 KVEVKKGYSVTLECKADGNPV--PNITWTRKN--NNL--------PG----------GEYSY--S--GN--SLTVRHTNR  158 (187)
Q Consensus       107 ~~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~--~~~--------~~----------~~~~~--~--~~--~l~i~~~~~  158 (187)
                      ...+.+|+++.|.|.+.|..-  -.+.|++.-  .-+        ..          ++...  .  .+  .|.|.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~   88 (130)
T d1rzga1           9 AEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRS   88 (130)
T ss_dssp             CEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCC
Confidence            345788999999999987643  357887632  110        11          11111  1  12  388889999


Q ss_pred             CCCeEEEEEEe
Q psy15738        159 HSAGIYLCVAN  169 (187)
Q Consensus       159 ~d~g~y~C~~~  169 (187)
                      +|++.|.|...
T Consensus        89 eDtA~YYCAr~   99 (130)
T d1rzga1          89 EDTAVFYCASP   99 (130)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CccEEEEEEEe
Confidence            99999999754

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.061  Score=29.44  Aligned_cols=40  Identities=15%  Similarity=0.353  Sum_probs=32.7

Q ss_pred             EeCcEEEEecCCCCCCeEEEEEEecCCCCcc-eeeEEEEEE
Q psy15738        146 YSGNSLTVRHTNRHSAGIYLCVANNMVGSSA-AASIALHVL  185 (187)
Q Consensus       146 ~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-s~~~~l~v~  185 (187)
                      ..+++|.|.++.+.|.|.|...+.+.-|... ..++.|.|+
T Consensus        60 ~~nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~  100 (101)
T d1hnfa1          60 FKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  100 (101)
T ss_dssp             CTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             ccCCcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence            3578999999999999999999999888754 456666653

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=95.17  E-value=0.057  Score=31.04  Aligned_cols=63  Identities=24%  Similarity=0.475  Sum_probs=41.1

Q ss_pred             EEEecCCcEEEEeEeccCCC--CcEEEEeC--CeeC----------C----------CCcEEE--eC----cEEEEecCC
Q psy15738        108 VEVKKGYSVTLECKADGNPV--PNITWTRK--NNNL----------P----------GGEYSY--SG----NSLTVRHTN  157 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~--p~~~W~~~--~~~~----------~----------~~~~~~--~~----~~l~i~~~~  157 (187)
                      ..+.+|+++.|.|.+.|...  -.+.|++.  |..+          .          .++...  ..    -.|.|.+++
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~   89 (120)
T d1dlfh_          10 GLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLR   89 (120)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeecc
Confidence            35678999999999987643  34778763  1110          0          012211  11    258889999


Q ss_pred             CCCCeEEEEEEec
Q psy15738        158 RHSAGIYLCVANN  170 (187)
Q Consensus       158 ~~d~g~y~C~~~n  170 (187)
                      .+|++.|.|....
T Consensus        90 ~eDtAvYYCA~~~  102 (120)
T d1dlfh_          90 AEDTGIYYCTGIY  102 (120)
T ss_dssp             GGGCEEEEEEEEB
T ss_pred             CCCceEEEeeEec
Confidence            9999999997654

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.038  Score=30.37  Aligned_cols=30  Identities=10%  Similarity=0.015  Sum_probs=21.0

Q ss_pred             ceeEEEEEecccceeEEeeccceeeEEEEEEE
Q psy15738         62 LSYILAMEKEEEERKKKKKRKKRKKKKKKKEK   93 (187)
Q Consensus        62 ~~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v   93 (187)
                      ...|.+++.+|+|.|.|.....  +..+.|.|
T Consensus        68 sL~I~~l~~~DsG~Y~C~v~~~--~~~v~L~V   97 (97)
T d2nxyb1          68 PLIIKNLKIEDSDTYICEVEDQ--KEEVQLLV   97 (97)
T ss_dssp             CEEECSCCGGGCEEEEEEETTE--EEEEEEEE
T ss_pred             EEEECCCChHHCEEEEEEEecC--CeEEEEEC
Confidence            4558899999999999965443  34455543

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.12  Score=28.99  Aligned_cols=33  Identities=12%  Similarity=0.057  Sum_probs=21.0

Q ss_pred             EEEEEecccc-eeEEeecc---------ceeeEEEEEEEEcCC
Q psy15738         65 ILAMEKEEEE-RKKKKKRK---------KRKKKKKKKEKRIPP   97 (187)
Q Consensus        65 ~~~v~~~d~g-~y~c~~~~---------~~~~~~~~l~v~~~p   97 (187)
                      ...+..+|.| .|+|.+..         ........|.|+++|
T Consensus        67 ~~~~~~~D~g~~ltC~a~~~~~~~~~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          67 TFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             EECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred             EccCChHHCCcEEEEEEEcCcCCccccccccceeEEeEEEeCC
Confidence            4456666776 79995441         224456678888776

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.06  E-value=0.017  Score=31.35  Aligned_cols=56  Identities=5%  Similarity=0.022  Sum_probs=33.8

Q ss_pred             CcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEEE--eCc---EEEEecCCCCCCeEEEEEEecC
Q psy15738        114 YSVTLECKADGNPVP--NITWTRKNNNLPGGEYSY--SGN---SLTVRHTNRHSAGIYLCVANNM  171 (187)
Q Consensus       114 ~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~--~~~---~l~i~~~~~~d~g~y~C~~~n~  171 (187)
                      ..+.|.|.+.|..++  .+.|.++|..........  ..+   .+.+..+..  ...|+|.+...
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~~~--~~~yTC~V~H~   76 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYED--SNSVTCSVQHD   76 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEETT--TTTCEEEEEET
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEecCC--CCEEEEEEEEC
Confidence            456899999998554  578999987654332211  111   222223333  44699999864

>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=94.99  E-value=0.036  Score=27.99  Aligned_cols=58  Identities=21%  Similarity=0.375  Sum_probs=35.0

Q ss_pred             CCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEeC
Q psy15738        113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK  187 (187)
Q Consensus       113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~~  187 (187)
                      .+.+.|.|.      ..|.|++++......    ...++.+-+....-.|.|.|..     ..  ....|.|.|+
T Consensus         8 edkV~L~Cn------~sI~w~k~~~~~~~~----~~ktlnLG~~~~DPRGiY~C~~-----~~--~~~~lQVyYR   65 (66)
T d1xmwa2           8 EDKVILKCN------SSITLLQGTAGQEVS----DNKTLNLGKRIEDPRGMYQCGE-----NA--KSFTLQVYYR   65 (66)
T ss_dssp             TTEEEEECS------SSCEEEEECCCCBSS----SSSBBCCBCSTTCCEEEEECCS-----SS--CCCEEEEEEC
T ss_pred             CceEEEEcc------CeEEEccCccccccC----CCcEEeCCCcccCCCcceECCC-----CC--cceeEEEEEe
Confidence            468889994      358999986422211    1244555555555579999931     12  2335777764

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.014  Score=33.54  Aligned_cols=34  Identities=12%  Similarity=-0.079  Sum_probs=23.8

Q ss_pred             cceeEEEEEecccceeEEe--eccceeeEEEEEEEE
Q psy15738         61 YLSYILAMEKEEEERKKKK--KRKKRKKKKKKKEKR   94 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~--~~~~~~~~~~~l~v~   94 (187)
                      ..+.|.+++.+|.|.|+|.  .........+.|+|.
T Consensus        88 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          88 ASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            3455889999999999993  334455566666664

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=94.67  E-value=0.046  Score=31.99  Aligned_cols=62  Identities=24%  Similarity=0.461  Sum_probs=40.5

Q ss_pred             EEEecCCcEEEEeEeccCCC--CcEEEEeCC--eeC----------C----------CCcEEE--e--C--cEEEEecCC
Q psy15738        108 VEVKKGYSVTLECKADGNPV--PNITWTRKN--NNL----------P----------GGEYSY--S--G--NSLTVRHTN  157 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~--~~~----------~----------~~~~~~--~--~--~~l~i~~~~  157 (187)
                      ..+.+|+++.|.|.+.|...  -.+.|++..  ..+          .          .++...  .  .  -.|.+.+++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~   89 (131)
T d3c2ah1          10 GLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLK   89 (131)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccc
Confidence            35688999999999987643  257777632  100          0          111111  1  1  248888999


Q ss_pred             CCCCeEEEEEEe
Q psy15738        158 RHSAGIYLCVAN  169 (187)
Q Consensus       158 ~~d~g~y~C~~~  169 (187)
                      .+|++.|.|...
T Consensus        90 ~eDTAvYYCAR~  101 (131)
T d3c2ah1          90 TEDTAVYSCTTD  101 (131)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCceEEEEecc
Confidence            999999999765

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.029  Score=31.40  Aligned_cols=62  Identities=15%  Similarity=0.231  Sum_probs=37.3

Q ss_pred             cCCcEEEEeEeccCCCC--cEEEEeCCeeCCC---------CcEEEeCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738        112 KGYSVTLECKADGNPVP--NITWTRKNNNLPG---------GEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGS  174 (187)
Q Consensus       112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  174 (187)
                      .+..+.|.|.+.+..+.  .|.|.+++.....         .......+.|.+..-.. ....|.|.+......
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w-~~~~ytC~V~H~~~~   91 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GTQTYICNVNHKPSN   91 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGG-GTCCCEEEEEEGGGT
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECcccc-CCCeEEEEEEeCCCC
Confidence            35678999999887433  6899777643210         00111224566654433 245799999986543

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.043  Score=30.19  Aligned_cols=17  Identities=29%  Similarity=0.286  Sum_probs=11.6

Q ss_pred             EEEEEecccceeEEeec
Q psy15738         65 ILAMEKEEEERKKKKKR   81 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~   81 (187)
                      .+.+...+...|+|...
T Consensus        66 ~l~v~~~~~~~ytC~V~   82 (94)
T d1de4a1          66 TLAVPPGEEQRYTCQVE   82 (94)
T ss_dssp             EEEECTTCGGGEEEEEE
T ss_pred             EEEECCCCCCEEEEEEE
Confidence            45666677788999443

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.08  Score=29.96  Aligned_cols=34  Identities=6%  Similarity=-0.088  Sum_probs=22.4

Q ss_pred             eeeccEEEeeccc-cccceeEEEEEecccceeEEe
Q psy15738         46 ITSCSYIILATSL-LHYLSYILAMEKEEEERKKKK   79 (187)
Q Consensus        46 ~~~~~~~~~~~~~-~~~~~~~~~v~~~d~g~y~c~   79 (187)
                      ...+++.+..... ......|.+++.+|+|.|.|.
T Consensus        60 ~~~~R~~~~~~~~~~~~~Lti~~l~~~Dsg~Y~Ca   94 (113)
T d1smoa_          60 VQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCV   94 (113)
T ss_dssp             EEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             eECCeEEEEEECCCCEEEEEEccCCcccCceEEEE
Confidence            3446666654332 223455779999999999993

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=94.29  E-value=0.055  Score=30.11  Aligned_cols=19  Identities=11%  Similarity=0.050  Sum_probs=12.7

Q ss_pred             EEEEEecccceeEEeeccc
Q psy15738         65 ILAMEKEEEERKKKKKRKK   83 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~   83 (187)
                      .+.+..++.+.|+|.....
T Consensus        67 ~l~v~~~~~~~ytC~V~H~   85 (100)
T d1muja1          67 YLTFIPSDDDIYDCKVEHW   85 (100)
T ss_dssp             EEEECCCTTCCEEEEEECT
T ss_pred             EeEEcCCCCCEEEEEEEEC
Confidence            4566667778899944433

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.09  Score=28.79  Aligned_cols=17  Identities=18%  Similarity=0.079  Sum_probs=14.2

Q ss_pred             eeEEEEEecccceeEEe
Q psy15738         63 SYILAMEKEEEERKKKK   79 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~   79 (187)
                      ..|..|+..|+|.|+|.
T Consensus        59 F~i~~v~~~~~G~Y~C~   75 (95)
T d1olla1          59 FYIPDMNSRMAGQYSCI   75 (95)
T ss_dssp             EEESSCCGGGCEEEEEE
T ss_pred             EEEeeeecCCCceEEEE
Confidence            34679999999999993

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.82  E-value=0.1  Score=27.84  Aligned_cols=29  Identities=0%  Similarity=-0.083  Sum_probs=17.7

Q ss_pred             EEEEEecccceeEEeec---cceeeEEEEEEE
Q psy15738         65 ILAMEKEEEERKKKKKR---KKRKKKKKKKEK   93 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v   93 (187)
                      ...+-.+|.|.|+|.+.   +...+..+++.|
T Consensus        72 F~pvl~sDnGsYrCSanf~s~vieSHSvti~V  103 (104)
T d1xaua_          72 FKPIHLSDNGSYSCSTNFNSQVINSHSVTIHV  103 (104)
T ss_dssp             ETTCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             eeeeeecCCCceEEecCCChhheecceEEEEe
Confidence            44567789999999443   334444444443

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.12  Score=28.62  Aligned_cols=17  Identities=6%  Similarity=0.055  Sum_probs=11.8

Q ss_pred             EEEEEecccceeEEeec
Q psy15738         65 ILAMEKEEEERKKKKKR   81 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~   81 (187)
                      .+.+..+|.+.|+|...
T Consensus        68 ~l~v~~~~~~~ytC~V~   84 (100)
T d1k5nb_          68 YTEFTPTEKDEYACRVN   84 (100)
T ss_dssp             EEEECCCSSCCEEEEEE
T ss_pred             EeEECCCCCCEEEEEEE
Confidence            45666677789999444

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=93.45  E-value=0.1  Score=28.83  Aligned_cols=57  Identities=16%  Similarity=0.146  Sum_probs=27.5

Q ss_pred             cceEEccC--CCCeeEEE-eCeEeeeccEE--Eeecc-ccccceeEEEEEecccceeEEeecc
Q psy15738         26 LAIMFADS--RPESTFWI-FGKLITSCSYI--ILATS-LLHYLSYILAMEKEEEERKKKKKRK   82 (187)
Q Consensus        26 ~~~~~~~~--~~~~~~w~-~~~~~~~~~~~--~~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~   82 (187)
                      +.|.+.+.  ..-...|+ +|.++......  ...++ ........+.+..++...|+|....
T Consensus        24 L~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H   86 (99)
T d1uvqa1          24 LICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEH   86 (99)
T ss_dssp             EEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEEC
T ss_pred             EEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEe
Confidence            35666644  33356676 33544432111  11111 1222333466667777889994443

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=93.35  E-value=0.11  Score=28.67  Aligned_cols=19  Identities=11%  Similarity=0.006  Sum_probs=12.6

Q ss_pred             EEEEEecccceeEEeeccc
Q psy15738         65 ILAMEKEEEERKKKKKRKK   83 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~~   83 (187)
                      .+.+...+...|+|.....
T Consensus        68 ~l~~~~~~~~~ytC~V~H~   86 (98)
T d1d5mb1          68 MLETVPRSGEVYTCQVEHP   86 (98)
T ss_dssp             EEECCCCTTCEEEEEEECT
T ss_pred             EeeEcCCCCCEEEEEEEEC
Confidence            4566667778899955443

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=93.33  E-value=0.13  Score=28.54  Aligned_cols=18  Identities=6%  Similarity=-0.001  Sum_probs=11.8

Q ss_pred             EEEEEecccceeEEeecc
Q psy15738         65 ILAMEKEEEERKKKKKRK   82 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~   82 (187)
                      .+.+...+...|+|....
T Consensus        69 ~L~v~~~~~~~ytC~V~H   86 (101)
T d1fnga1          69 YLTFLPSTDDFYDCEVDH   86 (101)
T ss_dssp             EEEECCCTTCCEEEEEEC
T ss_pred             EeEEcCCCCCEEEEEEEE
Confidence            456666677789994443

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.066  Score=30.38  Aligned_cols=36  Identities=11%  Similarity=0.055  Sum_probs=23.5

Q ss_pred             cceeEEEEEecccceeEEee--ccceeeEEEEEEEEcC
Q psy15738         61 YLSYILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIP   96 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~   96 (187)
                      ..+.|..++.+|+|.|.|..  ........+.|+|...
T Consensus        74 ~sL~I~~l~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          74 FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLEH  111 (116)
T ss_dssp             EEEEECSCCGGGCEEEEEEESCGGGCCEEEEEEEEECC
T ss_pred             EEEEEhhhCcCCCEEEEEEEEcCCCCceEeEEEEEECC
Confidence            34457889999999999933  2333344567776543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.98  E-value=0.061  Score=30.56  Aligned_cols=18  Identities=6%  Similarity=-0.127  Sum_probs=15.6

Q ss_pred             cceeEEEEEecccceeEE
Q psy15738         61 YLSYILAMEKEEEERKKK   78 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c   78 (187)
                      ..+.|.+++.+|+|.|.|
T Consensus        81 ~sL~I~~v~~~DsG~Y~C   98 (119)
T d1neua_          81 GSIVIHNLDYSDNGTFTC   98 (119)
T ss_dssp             CCEEECSCCGGGCEEEEE
T ss_pred             EEEEECCCChHHCEEEEE
Confidence            445588999999999999

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.51  E-value=0.2  Score=27.52  Aligned_cols=56  Identities=7%  Similarity=-0.051  Sum_probs=26.9

Q ss_pred             ceEEccC--CCCeeEEEeC-eEeeeccEEE-eecc-ccccceeEEEEEecccceeEEeecc
Q psy15738         27 AIMFADS--RPESTFWIFG-KLITSCSYII-LATS-LLHYLSYILAMEKEEEERKKKKKRK   82 (187)
Q Consensus        27 ~~~~~~~--~~~~~~w~~~-~~~~~~~~~~-~~~~-~~~~~~~~~~v~~~d~g~y~c~~~~   82 (187)
                      .|.+.+.  ..-...|+.+ ..+....... ..++ ........+.+...+.+.|+|....
T Consensus        24 ~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H   84 (99)
T d1lk2b_          24 NCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKH   84 (99)
T ss_dssp             EEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEEC
T ss_pred             EEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEe
Confidence            5666644  3335567744 4443322211 1111 1222233456666677899994443

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.49  E-value=0.36  Score=26.75  Aligned_cols=19  Identities=5%  Similarity=0.122  Sum_probs=15.6

Q ss_pred             cceeEEEEEecccceeEEe
Q psy15738         61 YLSYILAMEKEEEERKKKK   79 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~   79 (187)
                      ....|.+++.+|+|.|.|.
T Consensus        70 ~~L~I~~l~~~DsG~Y~C~   88 (108)
T d1hkfa_          70 FTVTMTDLREEDSGHYWCR   88 (108)
T ss_dssp             EEEEECSCCGGGCEEEEEE
T ss_pred             EEEEEhhhCCCCCEEEEEE
Confidence            4455789999999999993

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.06  E-value=0.1  Score=28.68  Aligned_cols=17  Identities=18%  Similarity=0.120  Sum_probs=14.3

Q ss_pred             eeEEEEEecccceeEEe
Q psy15738         63 SYILAMEKEEEERKKKK   79 (187)
Q Consensus        63 ~~~~~v~~~d~g~y~c~   79 (187)
                      ..|..|+..|+|.|.|.
T Consensus        64 F~l~~vt~~~~G~Y~C~   80 (99)
T d1ucta1          64 FVIDHMDANKAGRYQCQ   80 (99)
T ss_dssp             EEECSCCGGGCEEEEEE
T ss_pred             EEecCCCHHHCceEEEE
Confidence            34679999999999993

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=91.82  E-value=0.21  Score=27.51  Aligned_cols=17  Identities=12%  Similarity=-0.042  Sum_probs=11.1

Q ss_pred             EEEEEecccceeEEeec
Q psy15738         65 ILAMEKEEEERKKKKKR   81 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~   81 (187)
                      .+.|..++...|+|...
T Consensus        67 ~L~v~~~~~~~ytC~V~   83 (98)
T d1hdmb1          67 HLALTPSYGDTYTCVVE   83 (98)
T ss_dssp             EEEECCCTTCCEEEEEE
T ss_pred             EeEcCCCCCCEEEEEEE
Confidence            35566667778999443

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.39  E-value=0.16  Score=27.54  Aligned_cols=18  Identities=11%  Similarity=0.302  Sum_probs=12.0

Q ss_pred             EEEEEecccceeEEeecc
Q psy15738         65 ILAMEKEEEERKKKKKRK   82 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~   82 (187)
                      .+.+...+...|+|....
T Consensus        63 ~l~v~~~~~~~ytC~V~H   80 (91)
T d3frua1          63 LLEVKRGDEHHYQCQVEH   80 (91)
T ss_dssp             EEEEETTCGGGEEEEEEC
T ss_pred             EEEECCCCCCEEEEEEEe
Confidence            456666777889994443

>d2oz4a1 b.1.1.3 (A:283-366) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.24  E-value=0.5  Score=24.64  Aligned_cols=70  Identities=24%  Similarity=0.308  Sum_probs=41.8

Q ss_pred             EEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCC-CCcc--eeeEEEEEE
Q psy15738        109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMV-GSSA--AASIALHVL  185 (187)
Q Consensus       109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~-g~~~--s~~~~l~v~  185 (187)
                      .+.+|..++..|.+.+  .+.+.  .+|.+.....   ...-|.+......|...|.|.|.-.. |..-  ..++.|+|+
T Consensus        12 ~v~eGt~VtVtC~a~~--~a~v~--L~G~p~~~Pg---~~aql~LnAseeDd~R~F~C~A~LeV~G~~L~Knqt~eL~VL   84 (84)
T d2oz4a1          12 EVSEGTEVTVKCEAHP--RAKVT--LNGVPAQPLG---PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL   84 (84)
T ss_dssp             EEETTCEEEEEEECCT--TSEEE--ESSCSSSCCS---SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEE
T ss_pred             cCCCCCEEEEEEecCC--CcEEE--EccCCCCCCC---CceEEEEecCcccCCcEEEEEEEEEECcEEEEecceEEEEeC
Confidence            6789999999999863  34444  5665433221   11334454434445679999999654 4432  345566653

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.03  E-value=0.61  Score=25.20  Aligned_cols=18  Identities=0%  Similarity=-0.237  Sum_probs=15.2

Q ss_pred             cceeEEEEEecccceeEE
Q psy15738         61 YLSYILAMEKEEEERKKK   78 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c   78 (187)
                      ....|..|+..|+|.|+|
T Consensus        54 a~F~i~~v~~~~~G~Y~C   71 (93)
T d1olla2          54 AEFPLGPVTTAHRGTYRC   71 (93)
T ss_dssp             EEEEEEECCGGGCEEEEE
T ss_pred             eEEEecccChhcCceEEE
Confidence            344578999999999999

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=91.03  E-value=0.2  Score=27.99  Aligned_cols=18  Identities=11%  Similarity=0.239  Sum_probs=10.3

Q ss_pred             EEEEEecc-cceeEEeecc
Q psy15738         65 ILAMEKEE-EERKKKKKRK   82 (187)
Q Consensus        65 ~~~v~~~d-~g~y~c~~~~   82 (187)
                      .+.+..+| ...|+|....
T Consensus        73 ~L~v~~~~w~~~ytC~V~H   91 (107)
T d1hxmb2          73 WLTVPEKSLDKEHRCIVRH   91 (107)
T ss_dssp             EEEECTGGGGSCEEEEEEE
T ss_pred             EEEEecccCCCeEEEEEEE
Confidence            45555555 3468884443

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=90.97  E-value=0.017  Score=32.94  Aligned_cols=60  Identities=12%  Similarity=0.159  Sum_probs=34.1

Q ss_pred             CCcEEEEeEeccCCC--CcEEEEeCCeeCCCCcEEE--eC---cEEEEecCCCCC---CeEEEEEEecCC
Q psy15738        113 GYSVTLECKADGNPV--PNITWTRKNNNLPGGEYSY--SG---NSLTVRHTNRHS---AGIYLCVANNMV  172 (187)
Q Consensus       113 g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~--~~---~~l~i~~~~~~d---~g~y~C~~~n~~  172 (187)
                      ++.+.|.|.+.|.-+  ..|.|.+++..........  .+   .......+..++   ...|.|.+....
T Consensus        27 ~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   96 (111)
T d1pfca_          27 KKKVSLTCMITGFYPADINVEWDSSEPSDYKNTPPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHEA   96 (111)
T ss_dssp             TTSCCEEEEEESCCSSCCEEESSSCCTTTEEEEEEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEETT
T ss_pred             CCceEEEEEEEeeECCCcEEEEeeCCCCCcEEcccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            567889999998743  3688987774210000000  11   122233455554   357999999853

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.64  E-value=0.0029  Score=35.63  Aligned_cols=64  Identities=16%  Similarity=0.163  Sum_probs=36.9

Q ss_pred             EecCCcEEEEeEeccC--CC-CcEEEEeCCeeCCCCc--EEEeCc---EEEEecCCCCC---CeEEEEEEecCCC
Q psy15738        110 VKKGYSVTLECKADGN--PV-PNITWTRKNNNLPGGE--YSYSGN---SLTVRHTNRHS---AGIYLCVANNMVG  173 (187)
Q Consensus       110 ~~~g~~~~l~C~~~g~--p~-p~~~W~~~~~~~~~~~--~~~~~~---~l~i~~~~~~d---~g~y~C~~~n~~g  173 (187)
                      +..+..+.|.|.+.|.  |. ..|.|++++.......  ....++   ......+...+   ...|.|.+....-
T Consensus        15 ~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~~ftC~V~H~~~   89 (101)
T d1ow0a1          15 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPES   89 (101)
T ss_dssp             HHHCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCSSC
T ss_pred             HccCCCeEEEEEEeCCCCCcceEEEEEECCceeeeecceEECCCCCEEEEEEEEEcHHHcCCCCeEEEEEEeCCC
Confidence            3457889999999986  32 3699998775321100  001111   12223444433   5699999997643

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.26  E-value=0.12  Score=29.43  Aligned_cols=31  Identities=10%  Similarity=-0.033  Sum_probs=20.9

Q ss_pred             eccEEEeec-cccccceeEEEEEecccceeEE
Q psy15738         48 SCSYIILAT-SLLHYLSYILAMEKEEEERKKK   78 (187)
Q Consensus        48 ~~~~~~~~~-~~~~~~~~~~~v~~~d~g~y~c   78 (187)
                      ..++.+... ......+.|..++.+|+|.|.|
T Consensus        69 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C  100 (121)
T d2g5ra1          69 RDRFHLLGDPQTKNCTLSIRDARMSDAGRYFF  100 (121)
T ss_dssp             TTTEEECSCGGGTBCCEEECSCCGGGCEEEEE
T ss_pred             ceEEEEeeeCcCCEEEEEECCCChHHCEEEEE
Confidence            345554432 1223456689999999999999

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=90.04  E-value=0.47  Score=26.25  Aligned_cols=17  Identities=12%  Similarity=-0.046  Sum_probs=11.1

Q ss_pred             EEEEEecccceeEEeec
Q psy15738         65 ILAMEKEEEERKKKKKR   81 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~   81 (187)
                      .+.+..+|...|+|...
T Consensus        67 ~L~v~~~~~~~ytC~V~   83 (103)
T d1hdma1          67 YLNFTPEPSDIFSCIVT   83 (103)
T ss_dssp             EEEECCCTTCCEEEEEE
T ss_pred             EEEEecCCCCEEEEEEE
Confidence            35566667778999443

>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.77  E-value=0.86  Score=24.97  Aligned_cols=61  Identities=16%  Similarity=0.224  Sum_probs=42.8

Q ss_pred             EEEecCCcEEEEeEeccC-------CCCcEEEEeCCeeCCCCcEEEe---CcEEEEecCCCCCCeEEEEEEe
Q psy15738        108 VEVKKGYSVTLECKADGN-------PVPNITWTRKNNNLPGGEYSYS---GNSLTVRHTNRHSAGIYLCVAN  169 (187)
Q Consensus       108 ~~~~~g~~~~l~C~~~g~-------p~p~~~W~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~  169 (187)
                      ..+..|..++..|.....       -...+.|..++..++...+...   ..++++.+++... ...+|...
T Consensus        13 Pvv~lGS~~TAsCtI~~~c~~~~~~~A~~I~Wkl~~~~~P~~qy~~ln~T~~Svtl~~l~~~~-a~L~C~~l   83 (100)
T d1i1ra1          13 PVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLN-IQLTCNIL   83 (100)
T ss_dssp             CEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGGGCEEEETTEEEEEECSCCCSE-EEEEEEEE
T ss_pred             CeEECCCCEEEEEEECchhcCccCCCcceEEEEECCEECCchheEccCCcEEEEEEccccCCc-ceeEEEEe
Confidence            467889999999998522       3458999999999887665432   2457888888654 44555433

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.74  E-value=0.11  Score=28.97  Aligned_cols=18  Identities=0%  Similarity=0.014  Sum_probs=15.2

Q ss_pred             cceeEEEEEecccceeEE
Q psy15738         61 YLSYILAMEKEEEERKKK   78 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c   78 (187)
                      ..+.|.+++.+|+|.|+|
T Consensus        69 ~sL~I~~v~~~D~G~Y~C   86 (110)
T d1ncna_          69 WTLRLHNLQIKDKGLYQC   86 (110)
T ss_dssp             TEEEECSCCGGGCEEEEE
T ss_pred             EEEEECCCChhHCEEEEE
Confidence            344588999999999999

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.67  E-value=0.19  Score=27.80  Aligned_cols=18  Identities=22%  Similarity=0.183  Sum_probs=15.3

Q ss_pred             cceeEEEEEecccceeEE
Q psy15738         61 YLSYILAMEKEEEERKKK   78 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c   78 (187)
                      ....|..++.+|+|.|.|
T Consensus        65 ~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1          65 LSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             TEEEECSCCGGGCEEEEE
T ss_pred             EEEEECcCChHHCeEEEE
Confidence            345588999999999999

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.28  E-value=0.0036  Score=36.22  Aligned_cols=62  Identities=11%  Similarity=0.179  Sum_probs=36.6

Q ss_pred             ecCCcEEEEeEeccCCC----CcEEEEeCCeeCCCCcEE----------EeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738        111 KKGYSVTLECKADGNPV----PNITWTRKNNNLPGGEYS----------YSGNSLTVRHTNRHSAGIYLCVANNMV  172 (187)
Q Consensus       111 ~~g~~~~l~C~~~g~p~----p~~~W~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d~g~y~C~~~n~~  172 (187)
                      ..+..+.|.|.+.|..+    ..+.|.+++.........          ...+.|.+..-.....-.|+|.+....
T Consensus        27 ~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~~ytC~V~H~~  102 (116)
T d1igyb3          27 LITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAA  102 (116)
T ss_dssp             STTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSS
T ss_pred             ccCCCcEEEEEEecEeCCCCEEEEEECcCCeEcCCcEEcccEECCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            45788999999998643    246688887654221110          112345444322223568999998754

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=89.28  E-value=0.66  Score=25.22  Aligned_cols=18  Identities=11%  Similarity=0.135  Sum_probs=11.7

Q ss_pred             EEEEEecccceeEEeecc
Q psy15738         65 ILAMEKEEEERKKKKKRK   82 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~~   82 (187)
                      .+.+...+...|+|....
T Consensus        66 ~l~v~~~~~~~ytC~V~H   83 (97)
T d1uvqb1          66 MLEMTPQRGDVYTCHVEH   83 (97)
T ss_dssp             EEECCSCTTCCEEEEEEC
T ss_pred             EeccCCCCCCEEEEEEEe
Confidence            455666677789994443

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.79  E-value=0.49  Score=25.56  Aligned_cols=16  Identities=6%  Similarity=0.113  Sum_probs=10.1

Q ss_pred             EEEEEecccceeEEee
Q psy15738         65 ILAMEKEEEERKKKKK   80 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~   80 (187)
                      .+.+...+...|+|..
T Consensus        64 ~l~~~~~~~~~ytC~V   79 (94)
T d1t7va1          64 VVAVPPQDTAPYSCHV   79 (94)
T ss_dssp             EEEECTTCCSCEEEEE
T ss_pred             EeEeCCCCCCEEEEEE
Confidence            4555556667888833

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.56  E-value=0.84  Score=25.22  Aligned_cols=56  Identities=11%  Similarity=0.089  Sum_probs=26.6

Q ss_pred             ceEEccCCC--CeeEEEeC-eEeeeccEEEee---cc-ccccceeEEEEEecc---cceeEEeecc
Q psy15738         27 AIMFADSRP--ESTFWIFG-KLITSCSYIILA---TS-LLHYLSYILAMEKEE---EERKKKKKRK   82 (187)
Q Consensus        27 ~~~~~~~~~--~~~~w~~~-~~~~~~~~~~~~---~~-~~~~~~~~~~v~~~d---~g~y~c~~~~   82 (187)
                      .|.+.+..+  -...|+.+ ..+.........   .. ........+.|..+|   ...|+|....
T Consensus        26 ~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H   91 (107)
T d1mjul2          26 VCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATH   91 (107)
T ss_dssp             EEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEC
T ss_pred             EEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEE
Confidence            566665443  35777744 444332221111   11 111222246676665   5679994443

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.94  E-value=1.1  Score=24.41  Aligned_cols=18  Identities=6%  Similarity=0.047  Sum_probs=11.0

Q ss_pred             EEEEEecc---cceeEEeecc
Q psy15738         65 ILAMEKEE---EERKKKKKRK   82 (187)
Q Consensus        65 ~~~v~~~d---~g~y~c~~~~   82 (187)
                      .+.|..+|   ...|+|....
T Consensus        70 ~L~v~~~~w~~~~~ytC~V~H   90 (102)
T d1q0xl2          70 YLTLTARAWERHSSYSCQVTH   90 (102)
T ss_dssp             EEEEEHHHHTTCCEEEEEEEE
T ss_pred             EEEECHHHhCCCCEEEEEEEE
Confidence            45566554   5689995443

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.90  E-value=0.63  Score=25.50  Aligned_cols=18  Identities=11%  Similarity=0.146  Sum_probs=10.4

Q ss_pred             EEEEEecc---cceeEEeecc
Q psy15738         65 ILAMEKEE---EERKKKKKRK   82 (187)
Q Consensus        65 ~~~v~~~d---~g~y~c~~~~   82 (187)
                      .+.|..+|   ...|+|....
T Consensus        70 ~L~v~~~~w~~~~~ytC~V~H   90 (102)
T d1rzfl2          70 YLSLTPEQWKSHRSYSCQVTH   90 (102)
T ss_dssp             EEEECHHHHHHSSCEEEEEEE
T ss_pred             EEEECHHHhCCCCEEEEEEEE
Confidence            45565554   4568994443

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.18  E-value=0.62  Score=26.14  Aligned_cols=33  Identities=9%  Similarity=0.082  Sum_probs=20.9

Q ss_pred             eccEEEeeccc-cccceeEEEEEecccceeEEee
Q psy15738         48 SCSYIILATSL-LHYLSYILAMEKEEEERKKKKK   80 (187)
Q Consensus        48 ~~~~~~~~~~~-~~~~~~~~~v~~~d~g~y~c~~   80 (187)
                      ..++.+..... ....+.|.+++.+|+|.|.|..
T Consensus        59 ~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~   92 (114)
T d3bp5a1          59 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGA   92 (114)
T ss_dssp             CTTEEEEECTTSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             cCcceEEEeCCCCEEEEEECccCcCCCeEEEEEE
Confidence            34555544322 2234557789999999999943

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.07  E-value=0.69  Score=25.01  Aligned_cols=17  Identities=18%  Similarity=0.212  Sum_probs=11.1

Q ss_pred             EEEEEecccceeEEeec
Q psy15738         65 ILAMEKEEEERKKKKKR   81 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~   81 (187)
                      .+.+...+...|+|...
T Consensus        65 ~l~v~~~~~~~ytC~V~   81 (95)
T d1k5na1          65 AVVVPSGEEQRYTCHVQ   81 (95)
T ss_dssp             EEEEETTCGGGEEEEEE
T ss_pred             EEEEEcCCCCEEEEEEE
Confidence            45666666778999433

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.74  E-value=0.42  Score=26.83  Aligned_cols=33  Identities=0%  Similarity=-0.079  Sum_probs=21.4

Q ss_pred             eeccEEEeeccc-cccceeEEEEEecccceeEEe
Q psy15738         47 TSCSYIILATSL-LHYLSYILAMEKEEEERKKKK   79 (187)
Q Consensus        47 ~~~~~~~~~~~~-~~~~~~~~~v~~~d~g~y~c~   79 (187)
                      ..+++.+..... ......|..++.+|+|.|.|.
T Consensus        57 ~~gR~sis~d~~~~~~~lti~~L~~eDsa~YyCa   90 (110)
T d1u9ka_          57 HMGKFTLKHDPSEAMLQVQMTDLQVTDSGLYRCV   90 (110)
T ss_dssp             EETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             hCcEEEEEEECCCCEEEEEECccccCCCEEEEEE
Confidence            346777665332 223344667888999999994

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=86.14  E-value=0.95  Score=24.33  Aligned_cols=17  Identities=18%  Similarity=0.042  Sum_probs=10.7

Q ss_pred             EEEEEecccceeEEeec
Q psy15738         65 ILAMEKEEEERKKKKKR   81 (187)
Q Consensus        65 ~~~v~~~d~g~y~c~~~   81 (187)
                      .+.+...+...|+|...
T Consensus        66 ~l~v~~~~~~~ytC~V~   82 (94)
T d1hyrc1          66 ATRICQGEEQRFTCYME   82 (94)
T ss_dssp             EEEEETTCGGGEEEEEE
T ss_pred             EEEEcCCCCCEEEEEEE
Confidence            35566666678999443

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.93  E-value=0.22  Score=27.79  Aligned_cols=19  Identities=5%  Similarity=-0.048  Sum_probs=16.0

Q ss_pred             ccceeEEEEEecccceeEE
Q psy15738         60 HYLSYILAMEKEEEERKKK   78 (187)
Q Consensus        60 ~~~~~~~~v~~~d~g~y~c   78 (187)
                      +..+.|.+++.+|+|.|.|
T Consensus        78 ~~sL~I~~v~~~DsG~Y~C   96 (118)
T d1qfoa_          78 VCNLLLKDLKPEDSGTYNF   96 (118)
T ss_dssp             BCCEEECSCCGGGCEEEEE
T ss_pred             EEEEEECCCChhHCEEEEE
Confidence            3446688999999999999

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.14  E-value=1.8  Score=23.50  Aligned_cols=26  Identities=15%  Similarity=0.317  Sum_probs=21.1

Q ss_pred             ccEEEeeccccccceeEEEEEecccceeEE
Q psy15738         49 CSYIILATSLLHYLSYILAMEKEEEERKKK   78 (187)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c   78 (187)
                      ..+.++.++.+.    |..+...|.|.|..
T Consensus        55 ~~y~i~~nGtLk----IK~L~~~d~GtYkv   80 (101)
T d1hnfa1          55 DTYKLFKNGTLK----IKHLKTDDQDIYKV   80 (101)
T ss_dssp             TTEEECTTSCEE----ECSCCGGGCEEEEE
T ss_pred             ceEEEccCCcEE----eeeeeecCCCcEEE
Confidence            457777777777    88899999999966

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=84.86  E-value=0.66  Score=26.19  Aligned_cols=32  Identities=9%  Similarity=-0.073  Sum_probs=20.2

Q ss_pred             ccEEEeeccccccceeEEEEEecccceeEEee
Q psy15738         49 CSYIILATSLLHYLSYILAMEKEEEERKKKKK   80 (187)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~   80 (187)
                      .++.....+.......|.+++.+|++.|.|..
T Consensus        65 ~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~   96 (118)
T d2ij0c1          65 DKFLINHASPTLSTLTVTSAHPEDSGFYVCSA   96 (118)
T ss_dssp             TTEEEEECSSSEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccceeeccccccccccccccccccCceEEEEE
Confidence            34444433333334457888999999999954

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=84.38  E-value=2.1  Score=23.61  Aligned_cols=20  Identities=0%  Similarity=-0.109  Sum_probs=15.7

Q ss_pred             cceeEEEEEecccceeEEee
Q psy15738         61 YLSYILAMEKEEEERKKKKK   80 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~~   80 (187)
                      ..+.|.++..+|++.|.|..
T Consensus        72 ~~L~i~~~~~~Dsa~YyCA~   91 (110)
T d1ac6a_          72 FHLQKASVQESDSAVYYCAL   91 (110)
T ss_dssp             CCEEEEEECGGGCEEEEEEE
T ss_pred             EeeeecCcCcCCCcccceee
Confidence            44447789999999999954

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=81.47  E-value=2.8  Score=23.13  Aligned_cols=21  Identities=10%  Similarity=-0.198  Sum_probs=15.8

Q ss_pred             cceeEEEEEecccceeEEeec
Q psy15738         61 YLSYILAMEKEEEERKKKKKR   81 (187)
Q Consensus        61 ~~~~~~~v~~~d~g~y~c~~~   81 (187)
                      ..+.|..+..+|+|.|.|...
T Consensus        72 ~sL~i~~~~~~Dsg~Y~Ca~~   92 (114)
T d2cdea1          72 SSLHITASQLSDSASYICVVS   92 (114)
T ss_dssp             EEEEECSCCGGGCSEEEEEEE
T ss_pred             cccEEcccChhhCcccceeee
Confidence            344477889999999999443