Psyllid ID: psy15854

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MSSIIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLALRWVENASKLIIGTAGADLDPSLNQCDSEFIVEWA
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEcccccccccccccccccEEEEEEEccccEEEEEcccEEEEEEcccEEEcccccccccccccccccccccccccEEEEEccccccccccccccccEEEEEEEccccEEEEEcccccEEEEEEcccEEEccccHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEEEEcccEccccccEccEccccEEEEEEcccccEEEEEEccEEEEEEHHHEEEccccccccccccccccccccccccEEEEEEEcccccccccEcccccEEEEEEEcccccEEEEEEccccEEEEccccEEEccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mssiipydkirtapkklsegQARAKFNFVAQTHLELSLVKGELVTLIRRVdnnwfegrigtrrgifpvtyveqqsratpsgapvdqtlhidthsdpvpyhalynykpqnddelelregeTVFVMEKcddgwyvgssqrsgcfgtfpgnYVERASLALRWVENASKLIIGtagadldpslnqcdsEFIVEWA
Flexible Loop (DISEMBL)
mssiipydkirtapkklsegqARAKFNFVAQTHLELSLVKGELVTLIRrvdnnwfegrigtrrgiFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLALRWVENASKLIIGtagadldpslNQCDSEFIVEWA
Low Complexity Region (SEG)
MSSIIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLALRWVENASKLIIGTAGADLDPSLNQCDSEFIVEWA
Disordered region (IsUnstruct)
***********************AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE***************LHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLALRWVENASKLIIGTAGADLDPSLNQCDSEFIV***
Disordered Region (DISOPRED)
MSSIIPY****************AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV***************************YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE****************************************
Disordered Region (DISEMBL)
MSSIIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV***********PVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLALRWVENASKLIIGTAGADLDPSLNQCDSEFIVEWA
Disordered Region (DISPRO)
****************LSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR******************DPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSIIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLALRWVENASKLIIGTAGADLDPSLNQCDSEFIVEWA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	191	2.2.26 [Sep-21-2011]
O35413	1196	Sorbin and SH3 domain-con	yes	N/A	0.696	0.111	0.503	1e-34
O94875	1100	Sorbin and SH3 domain-con	no	N/A	0.691	0.12	0.512	2e-34
Q3UTJ2	1180	Sorbin and SH3 domain-con	yes	N/A	0.696	0.112	0.496	9e-34
Q62417	1290	Sorbin and SH3 domain-con	no	N/A	0.738	0.109	0.465	2e-33
Q9BX66	1292	Sorbin and SH3 domain-con	no	N/A	0.450	0.066	0.536	5e-20
Q9R1Z8	733	Vinexin OS=Mus musculus G	no	N/A	0.528	0.137	0.444	7e-20
O60504	671	Vinexin OS=Homo sapiens G	no	N/A	0.235	0.067	0.685	6e-18
A5D7F8	840	E3 ubiquitin-protein liga	no	N/A	0.382	0.086	0.395	1e-15
Q7Z6J0	888	E3 ubiquitin-protein liga	no	N/A	0.476	0.102	0.437	1e-15
Q5RBR0	888	E3 ubiquitin-protein liga	no	N/A	0.476	0.102	0.437	1e-15

>sp|O35413|SRBS2_RAT Sorbin and SH3 domain-containing protein 2 OS=Rattus norvegicus GN=Sorbs2 PE=1 SV=2

 Score =  145 bits (367), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/159 (50%), Positives = 104/159 (65%), Gaps = 26/159 (16%)

Query: 20   GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GT-RRGIFPVTYVEQQSRA 77
            G+A AK+NF A T++ELSL KG+ + L++RVD NW+EG+I GT R+GIFPV+YVE   R 
Sbjct: 1037 GEAIAKYNFNADTNVELSLRKGDRIILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVVKRN 1096

Query: 78   T-----------PSGAPVDQ--TLHIDTHSDPV-----------PYHALYNYKPQNDDEL 113
            T           P     D+  +L  +    PV           P+ ALYNY P+N+DEL
Sbjct: 1097 TKGSEDYPDPPLPHSYSSDRIYSLSSNKPQRPVFSHENIQGGGEPFQALYNYTPRNEDEL 1156

Query: 114  ELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
            ELRE + V VMEKCDDGW+VG+S+R+  FGTFPGNYV+R
Sbjct: 1157 ELRESDVVDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKR 1195

Adapter protein that plays a role in the assembling of signaling complexes, being a link between ABL kinases and actin cytoskeleton. Can form complex with ABL1 and CBL, thus promoting ubiquitination and degradation of ABL1 or with AKT1 and PAK1, thus mediating AKT1-mediated activation of PAK1 (By similarity). Isoform 2 increases water and sodium absorption in the intestine and gall-bladder.
Rattus norvegicus (taxid: 10116)

>sp|O94875|SRBS2_HUMAN Sorbin and SH3 domain-containing protein 2 OS=Homo sapiens GN=SORBS2 PE=1 SV=3

 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 106/160 (66%), Gaps = 28/160 (17%)

Query: 20   GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GT-RRGIFPVTYVEQQSRA 77
            G+A AK+NF A T++ELSL KG+ V L++RVD NW+EG+I GT R+GIFPV+YVE   + 
Sbjct: 941  GEAIAKYNFNADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVVKKN 1000

Query: 78   TPSGA------PVDQTLHID-THS-------DPV-----------PYHALYNYKPQNDDE 112
            T  GA      P+  +   D  HS        PV           P+ ALYNY P+N+DE
Sbjct: 1001 T-KGAEDYPDPPIPHSYSSDRIHSLSSNKPQRPVFTHENIQGGGEPFQALYNYTPRNEDE 1059

Query: 113  LELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
            LELRE + + VMEKCDDGW+VG+S+R+  FGTFPGNYV+R
Sbjct: 1060 LELRESDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKR 1099

Adapter protein that plays a role in the assembling of signaling complexes, being a link between ABL kinases and actin cytoskeleton. Can form complex with ABL1 and CBL, thus promoting ubiquitination and degradation of ABL1 or with AKT1 and PAK1, thus mediating AKT1-mediated activation of PAK1. Isoform 6 increases water and sodium absorption in the intestine and gall-bladder.

Homo sapiens (taxid: 9606)

>sp|Q3UTJ2|SRBS2_MOUSE Sorbin and SH3 domain-containing protein 2 OS=Mus musculus GN=Sorbs2 PE=1 SV=2

 Score =  142 bits (359), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 79/159 (49%), Positives = 102/159 (64%), Gaps = 26/159 (16%)

Query: 20   GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GT-RRGIFPVTYVEQQSRA 77
            G+A AK+NF A T++ELSL KG+ + L++RVD NW+EG+I GT R+GIFPV+YVE   R 
Sbjct: 1021 GEAIAKYNFNADTNVELSLRKGDRIILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVVKRN 1080

Query: 78   T-----------PSGAPVDQ--TLHIDTHSDP-----------VPYHALYNYKPQNDDEL 113
                        P     D+  TL  +    P            P+ ALYNY P+N+DEL
Sbjct: 1081 AKGAEDYPDPPLPHSYSSDRIYTLSSNKPQRPGFSHENIQGGGEPFQALYNYTPRNEDEL 1140

Query: 114  ELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
            ELRE + V VMEKCDDGW+VG+S+R+  FGTFPGNYV+R
Sbjct: 1141 ELRESDVVDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKR 1179

Adapter protein that plays a role in the assembling of signaling complexes, being a link between ABL kinases and actin cytoskeleton. Can form complex with ABL1 and CBL, thus promoting ubiquitination and degradation of ABL1 or with AKT1 and PAK1, thus mediating AKT1-mediated activation of PAK1.

Mus musculus (taxid: 10090)

>sp|Q62417|SRBS1_MOUSE Sorbin and SH3 domain-containing protein 1 OS=Mus musculus GN=Sorbs1 PE=1 SV=2

 Score =  142 bits (357), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/176 (46%), Positives = 105/176 (59%), Gaps = 35/176 (19%)

Query: 11   RTAPKKLSE------GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GT-R 62
            +  P+KL+       G+A AKFNF   T +E+S  KGE +TL+R+VD NW+EGRI GT R
Sbjct: 1111 KAQPRKLAPVQVLEYGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSR 1170

Query: 63   RGIFPVTYVEQQSR---------------ATPS-GAPVDQTLHIDTHSDPVP-------- 98
            +GIFP+TYV+   R               ++PS  A V             P        
Sbjct: 1171 QGIFPITYVDVLKRPLVKTPVDYIDLPYSSSPSRSATVSPQQPQAQQRRVTPDRSQPSLD 1230

Query: 99   ---YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
               Y ALY+Y PQNDDELELR+G+ V VMEKCDDGW+VG+S+R+  FGTFPGNYV+
Sbjct: 1231 LCSYQALYSYVPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTRQFGTFPGNYVK 1286

Plays a role in tyrosine phosphorylation of CBL by linking CBL to the insulin receptor. Required for insulin-stimulated glucose transport. Involved in formation of actin stress fibers and focal adhesions.

Mus musculus (taxid: 10090)

>sp|Q9BX66|SRBS1_HUMAN Sorbin and SH3 domain-containing protein 1 OS=Homo sapiens GN=SORBS1 PE=1 SV=3

 Score = 97.4 bits (241), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 60/95 (63%), Gaps = 9/95 (9%)

Query: 57   GRIGTRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELR 116
            GR   RRG        QQ R TP  +   Q L          Y ALY+Y PQNDDELELR
Sbjct: 1203 GRKAARRGGSQQPQA-QQRRVTPDRSQTSQDLFS--------YQALYSYIPQNDDELELR 1253

Query: 117  EGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
            +G+ V VMEKCDDGW+VG+S+R+  FGTFPGNYV+
Sbjct: 1254 DGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 1288

Plays a role in tyrosine phosphorylation of CBL by linking CBL to the insulin receptor. Required for insulin-stimulated glucose transport. Involved in formation of actin stress fibers and focal adhesions.

Homo sapiens (taxid: 9606)

>sp|Q9R1Z8|VINEX_MOUSE Vinexin OS=Mus musculus GN=Sorbs3 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 66/117 (56%), Gaps = 16/117 (13%)

Query: 50  VDNNWFEGRIGTRRGIFP--VTYVEQQSRATPSGAPVDQTLHIDTHSDPV---------- 97
           VD   + GR   RR  FP  +T  E +S+      P     H    S P+          
Sbjct: 614 VDPTDWGGRTSPRRSAFPFPITLQEPRSQTQSLNTPGPTLSHPRATSRPINLGPSSPNTE 673

Query: 98  ----PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
               PY A+Y Y+PQN+DELELREG+ V VM++CDDGW+VG S+R+  FGTFPGNYV
Sbjct: 674 IHWTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 730

Promotes up-regulation of actin stress fiber formation.

Mus musculus (taxid: 10090)

>sp|O60504|VINEX_HUMAN Vinexin OS=Homo sapiens GN=SORBS3 PE=1 SV=2

 Score = 90.5 bits (223), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 46/54 (85%)

Query: 97  VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
            PY A+Y Y+PQN+DELELREG+ V VM++CDDGW+VG S+R+  FGTFPGNYV
Sbjct: 615 TPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 668

Vinexin alpha isoform promotes up-regulation of actin stress fiber formation. Vinexin beta isoform plays a role in cell spreading and enhances the activation of JNK/SAPK in response to EGF stimulation by using its third SH3 domain.

Homo sapiens (taxid: 9606)

>sp|A5D7F8|SH3R1_BOVIN E3 ubiquitin-protein ligase SH3RF1 OS=Bos taurus GN=SH3RF1 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 51/96 (53%)

Query: 79  PSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQR 138
           P+  P DQT H      P  Y A+Y Y P+ +DELELR+GE   V E+C DGW+ G+S  
Sbjct: 424 PTAGPTDQTTHPRPQPRPSVYVAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMH 483

Query: 139 SGCFGTFPGNYVERASLALRWVENASKLIIGTAGAD 174
           +   G FPGNYV   + A+         ++ T  A 
Sbjct: 484 TSKIGVFPGNYVAPVTRAVTSASQGKVPMLTTGPAS 519

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as UBE2D1 or UBE2N and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination. Stimulates ubiquitination of potassium channel KCNJ1, enhancing it's dynamin-dependent and clathrin-independent endocytosis.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7Z6J0|SH3R1_HUMAN E3 ubiquitin-protein ligase SH3RF1 OS=Homo sapiens GN=SH3RF1 PE=1 SV=2

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 5/96 (5%)

Query: 79  PSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQR 138
           P     DQ  H+   + P  Y A+Y Y P+ +DELELR+GE   V E+C DGW+ G+S  
Sbjct: 430 PMAGSTDQIAHLRPQTRPSVYVAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMH 489

Query: 139 SGCFGTFPGNYVERASLALRWVENAS--KLIIGTAG 172
           +   G FPGNYV   +   R V NAS  K+ + TAG
Sbjct: 490 TSKIGVFPGNYVAPVT---RAVTNASQAKVPMSTAG 522

Plays an essential role in the targeting of HIV-1 Gag to the plasma membrane, this function is dependent on it's RING domain, and hence it's E3 ligase activity.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5RBR0|SH3R1_PONAB E3 ubiquitin-protein ligase SH3RF1 OS=Pongo abelii GN=SH3RF1 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 5/96 (5%)

Query: 79  PSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQR 138
           P     DQ  H+   + P  Y A+Y Y P+ +DELELR+GE   V E+C DGW+ G+S  
Sbjct: 430 PMAGSTDQIAHLRPQTRPSVYVAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMH 489

Query: 139 SGCFGTFPGNYVERASLALRWVENAS--KLIIGTAG 172
           +   G FPGNYV   +   R V NAS  K+ + TAG
Sbjct: 490 TSKIGVFPGNYVAPVT---RAVTNASQAKVPMSTAG 522

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as UBE2D1 or UBE2N and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination. Stimulates ubiquitination of potassium channel KCNJ1, enhancing it's dynamin-dependent and clathrin-independent endocytosis.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
124487922	324	hypothetical protein [Maconellicoccus hi	0.790	0.466	0.545	5e-56
380028397	965	PREDICTED: uncharacterized protein LOC10	0.780	0.154	0.538	1e-55
328780855	966	PREDICTED: hypothetical protein LOC40965	0.780	0.154	0.538	1e-55
345488740	2222	PREDICTED: hypothetical protein LOC10012	0.780	0.067	0.538	4e-55
383851627	963	PREDICTED: uncharacterized protein LOC10	0.780	0.154	0.507	2e-51
281363103	2412	CAP, isoform Q [Drosophila melanogaster]	0.785	0.062	0.490	6e-47
221330144	2365	CAP, isoform L [Drosophila melanogaster]	0.785	0.063	0.490	6e-47
24652386	2376	CAP, isoform A [Drosophila melanogaster]	0.785	0.063	0.490	6e-47
14669814	2376	DCAPL1 [Drosophila melanogaster]	0.785	0.063	0.490	6e-47
442623181	2409	CAP, isoform Y [Drosophila melanogaster]	0.785	0.062	0.490	7e-47

>gi|124487922|gb|ABN12044.1| hypothetical protein [Maconellicoccus hirsutus]

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 114/209 (54%), Positives = 133/209 (63%), Gaps = 58/209 (27%)

Query: 4   IIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR 63
           IIPYD+IRT PK+ SEGQARAKFNF+AQT+LELSLVKGEL+ L RRVD+NW+EG+IG RR
Sbjct: 116 IIPYDEIRTLPKRPSEGQARAKFNFIAQTNLELSLVKGELIVLTRRVDDNWYEGKIGNRR 175

Query: 64  GIFPVTYV--------------------------------------------EQQSRATP 79
           GIFPV+YV                                            +  S  TP
Sbjct: 176 GIFPVSYVHVLREPGLQDITETTHNVARKPVAAPAAHSLITNQQSLPSQHNYQPNSYTTP 235

Query: 80  SGAP--------------VDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVME 125
              P              +++ LHIDT S+P+PY ALYNYKPQN+DELEL+EG+TVFVME
Sbjct: 236 VTLPRTTTRSQRDVGTLPLNEALHIDTSSEPIPYRALYNYKPQNEDELELKEGDTVFVME 295

Query: 126 KCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           KCDDGWYVGSSQR+  FGTFPGNYVER S
Sbjct: 296 KCDDGWYVGSSQRTSHFGTFPGNYVERIS 324

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028397|ref|XP_003697889.1| PREDICTED: uncharacterized protein LOC100867381 [Apis florea]

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 112/208 (53%), Positives = 130/208 (62%), Gaps = 59/208 (28%)

Query: 4   IIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR 63
           I+PYD +RT PKK  EGQARAKFNFVAQT+LELSL KGELV L RRVD NW+EGRIG R+
Sbjct: 757 ILPYDGMRTTPKKPYEGQARAKFNFVAQTNLELSLAKGELVVLTRRVDENWYEGRIGNRK 816

Query: 64  GIFPVTYV----------EQQSRATPSGAP------------------------------ 83
           GIFP++YV          E  ++  P  AP                              
Sbjct: 817 GIFPISYVEVITEPGLRSETPTQNKPVAAPAAHSLLANGSAGGKMSMGPHHYMPSIPVNM 876

Query: 84  -------------------VDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVM 124
                              V + LHIDTHS+P+PY ALYNY+PQN+DELEL+EG+TV+VM
Sbjct: 877 NTTQPHYNSLPRMGGNKLHVSEALHIDTHSEPIPYRALYNYRPQNEDELELKEGDTVYVM 936

Query: 125 EKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           EKCDDGWYVGSSQR+G FGTFPGNYVER
Sbjct: 937 EKCDDGWYVGSSQRTGYFGTFPGNYVER 964

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780855|ref|XP_393153.4| PREDICTED: hypothetical protein LOC409655 [Apis mellifera]

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 112/208 (53%), Positives = 130/208 (62%), Gaps = 59/208 (28%)

Query: 4   IIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR 63
           I+PYD +RT PKK  EGQARAKFNFVAQT+LELSL KGELV L RRVD NW+EGRIG R+
Sbjct: 758 ILPYDGMRTTPKKPYEGQARAKFNFVAQTNLELSLAKGELVVLTRRVDENWYEGRIGNRK 817

Query: 64  GIFPVTYV----------EQQSRATPSGAP------------------------------ 83
           GIFP++YV          E  ++  P  AP                              
Sbjct: 818 GIFPISYVEVITEPGLRSETPTQNKPVAAPAAHSLLANGSAGGKMSMGPHHYMPSIPVNM 877

Query: 84  -------------------VDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVM 124
                              V + LHIDTHS+P+PY ALYNY+PQN+DELEL+EG+TV+VM
Sbjct: 878 NTTQPHYNSLPRMGGNKLHVSEALHIDTHSEPIPYRALYNYRPQNEDELELKEGDTVYVM 937

Query: 125 EKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           EKCDDGWYVGSSQR+G FGTFPGNYVER
Sbjct: 938 EKCDDGWYVGSSQRTGYFGTFPGNYVER 965

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488740|ref|XP_001605377.2| PREDICTED: hypothetical protein LOC100121771 [Nasonia vitripennis]

 Score =  219 bits (558), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 113/210 (53%), Positives = 131/210 (62%), Gaps = 61/210 (29%)

Query: 4    IIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR 63
            IIPYD+IRT PKK  EGQARAKFNF+AQT+LELSL KGELV L RRVD NW+EGRI  R+
Sbjct: 2012 IIPYDEIRTLPKKPYEGQARAKFNFIAQTNLELSLGKGELVYLTRRVDENWYEGRIAGRK 2071

Query: 64   GIF--------------PVTYVEQQSRATPSG---------------------------- 81
            GIF              P T V+ +  A+P+                             
Sbjct: 2072 GIFPVSYVEVISEPGHRPETPVQSKPVASPAAHSMLSNGSAGGKLSMGPHHYTPSLPVNI 2131

Query: 82   -------------------APVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVF 122
                               APV++TLHIDTHS+P+PY ALYNY+PQN+DELEL EG+TV+
Sbjct: 2132 NTTQPHYNSLPKGGSKLHVAPVNETLHIDTHSEPIPYRALYNYRPQNEDELELNEGDTVY 2191

Query: 123  VMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
            VMEKCDDGWYVGSSQR+G FGTFPGNYVER
Sbjct: 2192 VMEKCDDGWYVGSSQRTGYFGTFPGNYVER 2221

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851627|ref|XP_003701333.1| PREDICTED: uncharacterized protein LOC100875671 [Megachile rotundata]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/211 (50%), Positives = 125/211 (59%), Gaps = 62/211 (29%)

Query: 4   IIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR 63
           I+PYD +RT PKK  EGQARAKFNFVAQT+LEL L KGELV L RRVD NW+EGRIG R+
Sbjct: 752 ILPYDGMRTTPKKPYEGQARAKFNFVAQTNLELPLAKGELVVLTRRVDENWYEGRIGNRK 811

Query: 64  GIF----------PVTYVEQQSRATPSGAP------------------------------ 83
           GIF          P    E  ++  P  AP                              
Sbjct: 812 GIFPISYVEVITEPGHRTETPTKNKPVAAPAAHSLLVNGSAGGKMSMGPHHYMPSIPVNI 871

Query: 84  ----------------------VDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETV 121
                                 +++ LHIDT S+P+PY ALYNY+PQN+DELEL+EG+TV
Sbjct: 872 NTTQPHYNSLPRMGGSKLHVSQLNEALHIDTQSEPIPYRALYNYRPQNEDELELKEGDTV 931

Query: 122 FVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           +VMEKCDDGWYVGSSQR+G FGTFPGNYVER
Sbjct: 932 YVMEKCDDGWYVGSSQRTGYFGTFPGNYVER 962

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281363103|ref|NP_001137638.2| CAP, isoform Q [Drosophila melanogaster] gi|272432428|gb|ACL83092.2| CAP, isoform Q [Drosophila melanogaster]

 Score =  192 bits (488), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 99/202 (49%), Positives = 119/202 (58%), Gaps = 52/202 (25%)

Query: 4    IIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR 63
            I+  D  RT  K+ SEGQARAK+NF AQ+ +ELSL KGELVTL RRVD NWFEG+I  R+
Sbjct: 2211 IVSRDGARTPSKRPSEGQARAKYNFQAQSGIELSLNKGELVTLTRRVDGNWFEGKIANRK 2270

Query: 64   GIFPVTYVE--------------------------------------------QQSRATP 79
            GIFP +YVE                                             Q+ A P
Sbjct: 2271 GIFPCSYVEVLTDIGAEDIAARTTTVITSQSTTNLRPNLDVLRTNINNEFNTLTQNGAQP 2330

Query: 80   SGAPVDQT--------LHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGW 131
                + +T        LH+DT S+P+ Y ALY Y+PQN DELEL EG+ V V+EKCDDGW
Sbjct: 2331 PNGILKETRTLHKTDALHVDTSSEPLAYRALYKYRPQNSDELELLEGDVVHVLEKCDDGW 2390

Query: 132  YVGSSQRSGCFGTFPGNYVERA 153
            +VG+SQR+GCFGTFPGNYVERA
Sbjct: 2391 FVGTSQRTGCFGTFPGNYVERA 2412

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221330144|ref|NP_001137637.1| CAP, isoform L [Drosophila melanogaster] gi|220902165|gb|ACL83091.1| CAP, isoform L [Drosophila melanogaster]

 Score =  192 bits (488), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 99/202 (49%), Positives = 119/202 (58%), Gaps = 52/202 (25%)

Query: 4    IIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR 63
            I+  D  RT  K+ SEGQARAK+NF AQ+ +ELSL KGELVTL RRVD NWFEG+I  R+
Sbjct: 2164 IVSRDGARTPSKRPSEGQARAKYNFQAQSGIELSLNKGELVTLTRRVDGNWFEGKIANRK 2223

Query: 64   GIFPVTYVE--------------------------------------------QQSRATP 79
            GIFP +YVE                                             Q+ A P
Sbjct: 2224 GIFPCSYVEVLTDIGAEDIAARTTTVITSQSTTNLRPNLDVLRTNINNEFNTLTQNGAQP 2283

Query: 80   SGAPVDQT--------LHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGW 131
                + +T        LH+DT S+P+ Y ALY Y+PQN DELEL EG+ V V+EKCDDGW
Sbjct: 2284 PNGILKETRTLHKTDALHVDTSSEPLAYRALYKYRPQNSDELELLEGDVVHVLEKCDDGW 2343

Query: 132  YVGSSQRSGCFGTFPGNYVERA 153
            +VG+SQR+GCFGTFPGNYVERA
Sbjct: 2344 FVGTSQRTGCFGTFPGNYVERA 2365

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24652386|ref|NP_610571.2| CAP, isoform A [Drosophila melanogaster] gi|21627574|gb|AAF58816.2| CAP, isoform A [Drosophila melanogaster]

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 99/202 (49%), Positives = 119/202 (58%), Gaps = 52/202 (25%)

Query: 4    IIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR 63
            I+  D  RT  K+ SEGQARAK+NF AQ+ +ELSL KGELVTL RRVD NWFEG+I  R+
Sbjct: 2175 IVSRDGARTPSKRPSEGQARAKYNFQAQSGIELSLNKGELVTLTRRVDGNWFEGKIANRK 2234

Query: 64   GIFPVTYVE--------------------------------------------QQSRATP 79
            GIFP +YVE                                             Q+ A P
Sbjct: 2235 GIFPCSYVEVLTDIGAEDIAARTTTVITSQSTTNLRPNLDVLRTNINNEFNTLTQNGAQP 2294

Query: 80   SGAPVDQT--------LHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGW 131
                + +T        LH+DT S+P+ Y ALY Y+PQN DELEL EG+ V V+EKCDDGW
Sbjct: 2295 PNGILKETRTLHKTDALHVDTSSEPLAYRALYKYRPQNSDELELLEGDVVHVLEKCDDGW 2354

Query: 132  YVGSSQRSGCFGTFPGNYVERA 153
            +VG+SQR+GCFGTFPGNYVERA
Sbjct: 2355 FVGTSQRTGCFGTFPGNYVERA 2376

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|14669814|dbj|BAB62017.1| DCAPL1 [Drosophila melanogaster]

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 99/202 (49%), Positives = 119/202 (58%), Gaps = 52/202 (25%)

Query: 4    IIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR 63
            I+  D  RT  K+ SEGQARAK+NF AQ+ +ELSL KGELVTL RRVD NWFEG+I  R+
Sbjct: 2175 IVSRDGARTPSKRPSEGQARAKYNFQAQSGIELSLNKGELVTLTRRVDGNWFEGKIANRK 2234

Query: 64   GIFPVTYVE--------------------------------------------QQSRATP 79
            GIFP +YVE                                             Q+ A P
Sbjct: 2235 GIFPCSYVEVLTDIGAEDIAARTTTVITSQSTTNLRPNLDVLRTNINNEFNTLTQNGAQP 2294

Query: 80   SGAPVDQT--------LHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGW 131
                + +T        LH+DT S+P+ Y ALY Y+PQN DELEL EG+ V V+EKCDDGW
Sbjct: 2295 PNGILKETRTLHKTDALHVDTSSEPLAYRALYKYRPQNSDELELLEGDVVHVLEKCDDGW 2354

Query: 132  YVGSSQRSGCFGTFPGNYVERA 153
            +VG+SQR+GCFGTFPGNYVERA
Sbjct: 2355 FVGTSQRTGCFGTFPGNYVERA 2376

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442623181|ref|NP_001260860.1| CAP, isoform Y [Drosophila melanogaster] gi|440214263|gb|AGB93393.1| CAP, isoform Y [Drosophila melanogaster]

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 99/202 (49%), Positives = 119/202 (58%), Gaps = 52/202 (25%)

Query: 4    IIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR 63
            I+  D  RT  K+ SEGQARAK+NF AQ+ +ELSL KGELVTL RRVD NWFEG+I  R+
Sbjct: 2208 IVSRDGARTPSKRPSEGQARAKYNFQAQSGIELSLNKGELVTLTRRVDGNWFEGKIANRK 2267

Query: 64   GIFPVTYVE--------------------------------------------QQSRATP 79
            GIFP +YVE                                             Q+ A P
Sbjct: 2268 GIFPCSYVEVLTDIGAEDIAARTTTVITSQSTTNLRPNLDVLRTNINNEFNTLTQNGAQP 2327

Query: 80   SGAPVDQT--------LHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGW 131
                + +T        LH+DT S+P+ Y ALY Y+PQN DELEL EG+ V V+EKCDDGW
Sbjct: 2328 PNGILKETRTLHKTDALHVDTSSEPLAYRALYKYRPQNSDELELLEGDVVHVLEKCDDGW 2387

Query: 132  YVGSSQRSGCFGTFPGNYVERA 153
            +VG+SQR+GCFGTFPGNYVERA
Sbjct: 2388 FVGTSQRTGCFGTFPGNYVERA 2409

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
MGI|MGI:1924574	1180	Sorbs2 "sorbin and SH3 domain	0.287	0.046	0.709	2.8e-33
UNIPROTKB|A6QLW6	712	SORBS3 "SORBS3 protein" [Bos t	0.376	0.101	0.565	8e-30
UNIPROTKB|Q5XIL4	733	Sorbs3 "Protein Sorbs3" [Rattu	0.277	0.072	0.698	8.8e-30
UNIPROTKB|O60504	671	SORBS3 "Vinexin" [Homo sapiens	0.277	0.078	0.698	1.1e-29
FB|FBgn0033504	2412	CAP "CAP" [Drosophila melanoga	0.534	0.042	0.527	1.3e-24
UNIPROTKB|F1PBV0	882	SH3RF3 "Uncharacterized protei	0.445	0.096	0.482	3.9e-24
UNIPROTKB|F1N2S5	844	SH3RF3 "Uncharacterized protei	0.293	0.066	0.607	8e-23
UNIPROTKB|E1C009	1006	SORBS1 "Uncharacterized protei	0.424	0.080	0.583	9.8e-21
UNIPROTKB|F1SC49	1293	SORBS1 "Uncharacterized protei	0.366	0.054	0.602	4.7e-19
ZFIN|ZDB-GENE-050327-1	617	sorbs3 "sorbin and SH3 domain	0.413	0.128	0.545	6.4e-19

MGI|MGI:1924574 Sorbs2 "sorbin and SH3 domain containing 2" [Mus musculus (taxid:10090)]

 Score = 227 (85.0 bits), Expect = 2.8e-33, Sum P(2) = 2.8e-33
 Identities = 39/55 (70%), Positives = 48/55 (87%)

Query:    98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
             P+ ALYNY P+N+DELELRE + V VMEKCDDGW+VG+S+R+  FGTFPGNYV+R
Sbjct:  1125 PFQALYNYTPRNEDELELRESDVVDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKR 1179

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0014069 "postsynaptic density" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0030054 "cell junction" evidence=IEA

GO:0030425 "dendrite" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

UNIPROTKB|A6QLW6 SORBS3 "SORBS3 protein" [Bos taurus (taxid:9913)]

 Score = 219 (82.2 bits), Expect = 8.0e-30, Sum P(2) = 8.0e-30
 Identities = 43/76 (56%), Positives = 54/76 (71%)

Query:    79 PSGA--PVDQTLHIDTHSDP--VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVG 134
             P G+  P D      T S+    PY A+Y Y+PQN+DELELREG+ V VM++CDDGW+VG
Sbjct:   634 PGGSSHPPDLGTSSSTTSEIHWTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVG 693

Query:   135 SSQRSGCFGTFPGNYV 150
              S+R+  FGTFPGNYV
Sbjct:   694 VSRRTQKFGTFPGNYV 709

GO:0051496 "positive regulation of stress fiber assembly" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

GO:0031589 "cell-substrate adhesion" evidence=IEA

GO:0017166 "vinculin binding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q5XIL4 Sorbs3 "Protein Sorbs3" [Rattus norvegicus (taxid:10116)]

 Score = 218 (81.8 bits), Expect = 8.8e-30, Sum P(2) = 8.8e-30
 Identities = 37/53 (69%), Positives = 46/53 (86%)

Query:    98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
             PY A+Y Y+PQN+DELELREG+ V VM++CDDGW+VG S+R+  FGTFPGNYV
Sbjct:   678 PYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 730

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0017166 "vinculin binding" evidence=IEA

GO:0031589 "cell-substrate adhesion" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

GO:0051496 "positive regulation of stress fiber assembly" evidence=IEA

UNIPROTKB|O60504 SORBS3 "Vinexin" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
 Identities = 37/53 (69%), Positives = 46/53 (86%)

Query:    98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
             PY A+Y Y+PQN+DELELREG+ V VM++CDDGW+VG S+R+  FGTFPGNYV
Sbjct:   616 PYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 668

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0031589 "cell-substrate adhesion" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0017166 "vinculin binding" evidence=IPI

GO:0005925 "focal adhesion" evidence=IDA

GO:0051496 "positive regulation of stress fiber assembly" evidence=IDA

GO:0051495 "positive regulation of cytoskeleton organization" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0007155 "cell adhesion" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006936 "muscle contraction" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

FB|FBgn0033504 CAP "CAP" [Drosophila melanogaster (taxid:7227)]

 Score = 291 (107.5 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
 Identities = 57/108 (52%), Positives = 73/108 (67%)

Query:    46 LIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNY 105
             ++R   NN F     T+ G  P   + +++R           LH+DT S+P+ Y ALY Y
Sbjct:  2311 VLRTNINNEFNTL--TQNGAQPPNGILKETRTLHK----TDALHVDTSSEPLAYRALYKY 2364

Query:   106 KPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
             +PQN DELEL EG+ V V+EKCDDGW+VG+SQR+GCFGTFPGNYVERA
Sbjct:  2365 RPQNSDELELLEGDVVHVLEKCDDGWFVGTSQRTGCFGTFPGNYVERA 2412

GO:0017166 "vinculin binding" evidence=ISS

GO:0005925 "focal adhesion" evidence=ISS

UNIPROTKB|F1PBV0 SH3RF3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 191 (72.3 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 41/85 (48%), Positives = 49/85 (57%)

Query:    72 EQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGW 131
             +  S A P+ A   Q            Y ALY YKPQ +DELELR+GE   V+EKC DGW
Sbjct:   438 DSSSSAGPASAAEQQGTAPKVQLPLNVYLALYAYKPQKNDELELRKGEMYRVLEKCQDGW 497

Query:   132 YVGSSQRSGCFGTFPGNYVERASLA 156
             + G+S R+G  G FPGNYV   S A
Sbjct:   498 FKGTSLRTGLSGVFPGNYVTPVSRA 522

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1N2S5 SH3RF3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 185 (70.2 bits), Expect = 8.0e-23, Sum P(2) = 8.0e-23
 Identities = 34/56 (60%), Positives = 41/56 (73%)

Query:    99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
             Y ALY YKPQ  DELELR+G+T  V+EKC DGW+ G++ R+G  G FPGNYV   S
Sbjct:   435 YLALYAYKPQKSDELELRKGDTYRVLEKCRDGWFKGTALRTGLSGVFPGNYVTPVS 490

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1C009 SORBS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 246 (91.7 bits), Expect = 9.8e-21, Sum P(2) = 9.8e-21
 Identities = 49/84 (58%), Positives = 61/84 (72%)

Query:    68 VTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKC 127
             +T   QQ +A   GA  D++    T  D V Y ALY+Y PQNDDELELR+G+ V VMEKC
Sbjct:   922 MTASPQQPQAQQQGASPDRS---QTPRDIVSYQALYSYTPQNDDELELRDGDIVDVMEKC 978

Query:   128 DDGWYVGSSQRSGCFGTFPGNYVE 151
             DDGW+VG+S+R+  FGTFPGNYV+
Sbjct:   979 DDGWFVGTSRRTRQFGTFPGNYVK 1002

GO:0001725 "stress fiber" evidence=IEA

GO:0005158 "insulin receptor binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005899 "insulin receptor complex" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

UNIPROTKB|F1SC49 SORBS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 229 (85.7 bits), Expect = 4.7e-19, Sum P(2) = 4.7e-19
 Identities = 47/78 (60%), Positives = 56/78 (71%)

Query:    73 QQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWY 132
             QQ R TP     D++    T  D   Y ALY+Y PQNDDELELR+G+ V VMEKCDDGW+
Sbjct:  1219 QQRRVTP-----DRS---QTSQDLFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWF 1270

Query:   133 VGSSQRSGCFGTFPGNYV 150
             VG+S+R+  FGTFPGNYV
Sbjct:  1271 VGTSRRTRQFGTFPGNYV 1288

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005899 "insulin receptor complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005158 "insulin receptor binding" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

ZFIN|ZDB-GENE-050327-1 sorbs3 "sorbin and SH3 domain containing 3" [Danio rerio (taxid:7955)]

 Score = 236 (88.1 bits), Expect = 6.4e-19, P = 6.4e-19
 Identities = 48/88 (54%), Positives = 57/88 (64%)

Query:    70 YVEQQSRATPSGAPVDQTLHIDTHSDPV-------PYHALYNYKPQNDDELELREGETVF 122
             Y+ Q    T S  P   T+   T   P        PY A+YNYKPQN DELELREG+ V 
Sbjct:   529 YITQDVARTQSSQP--NTVISSTSQSPANMGHLRQPYKAVYNYKPQNRDELELREGDIVQ 586

Query:   123 VMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
             V+EKCDDGW+VG+S+R+  FGTFPGNYV
Sbjct:   587 VLEKCDDGWFVGTSERTEAFGTFPGNYV 614

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35413	SRBS2_RAT	No assigned EC number	0.5031	0.6963	0.1112	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	191
cd11780	55	cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Ho	6e-37
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	2e-27
cd11917	61	cd11917, SH3_Sorbs2_3, Third (or C-terminal) Src H	3e-27
cd11918	58	cd11918, SH3_Vinexin_3, Third (or C-terminal) Src	8e-27
cd11916	59	cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src H	1e-26
cd11783	55	cd11783, SH3_SH3RF_3, Third Src Homology 3 domain	9e-23
cd11925	57	cd11925, SH3_SH3RF3_3, Third Src Homology 3 domain	3e-20
cd11923	57	cd11923, SH3_Sorbs2_2, Second Src Homology 3 domai	9e-19
cd11922	58	cd11922, SH3_Sorbs1_2, Second Src Homology 3 domai	2e-18
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	1e-17
cd11791	59	cd11791, SH3_UBASH3, Src homology 3 domain of Ubiq	3e-17
cd11926	55	cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain	6e-17
smart00326	56	smart00326, SH3, Src homology 3 domains	8e-17
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	1e-15
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	1e-15
smart00326	56	smart00326, SH3, Src homology 3 domains	8e-15
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	1e-14
cd11785	55	cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homo	1e-14
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	3e-14
cd11789	55	cd11789, SH3_Nebulin_family_C, C-terminal Src Homo	3e-14
cd11924	56	cd11924, SH3_Vinexin_2, Second Src Homology 3 doma	5e-14
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	1e-13
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	2e-13
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	3e-13
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	4e-13
cd11921	55	cd11921, SH3_Vinexin_1, First Src Homology 3 domai	5e-13
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	6e-13
cd11937	60	cd11937, SH3_UBASH3A, Src homology 3 domain of Ubi	7e-13
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	9e-13
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	9e-13
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	4e-12
cd11935	58	cd11935, SH3_Nebulette_C, C-terminal Src Homology	5e-12
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	6e-12
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	1e-11
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	1e-11
cd11787	53	cd11787, SH3_SH3RF_2, Second Src Homology 3 domain	2e-11
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	2e-11
cd11784	55	cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain	2e-11
cd11809	53	cd11809, SH3_srGAP, Src homology 3 domain of Slit-	3e-11
cd11869	54	cd11869, SH3_p40phox, Src Homology 3 domain of the	3e-11
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	3e-11
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	5e-11
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	6e-11
cd11901	55	cd11901, SH3_Nck1_2, Second Src Homology 3 domain	1e-10
cd11933	58	cd11933, SH3_Nebulin_C, C-terminal Src Homology 3	2e-10
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	2e-10
cd11936	62	cd11936, SH3_UBASH3B, Src homology 3 domain of Ubi	2e-10
cd11934	59	cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 do	3e-10
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	4e-10
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	6e-10
cd11962	54	cd11962, SH3_Abp1_fungi_C1, First C-terminal Src h	7e-10
cd11801	55	cd11801, SH3_JIP1_like, Src homology 3 domain of J	7e-10
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	1e-09
cd11932	57	cd11932, SH3_SH3RF2_2, Second Src Homology 3 domai	1e-09
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	2e-09
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	3e-09
cd11902	55	cd11902, SH3_Nck2_2, Second Src Homology 3 domain	3e-09
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	3e-09
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	4e-09
pfam00018	47	pfam00018, SH3_1, SH3 domain	4e-09
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	5e-09
cd11931	55	cd11931, SH3_SH3RF3_2, Second Src Homology 3 domai	8e-09
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	8e-09
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	2e-08
cd11790	64	cd11790, SH3_Amphiphysin, Src Homology 3 domain of	2e-08
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	2e-08
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	2e-08
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	2e-08
cd12058	58	cd12058, SH3_MLK4, Src Homology 3 domain of Mixed	2e-08
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	2e-08
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	2e-08
cd11818	50	cd11818, SH3_Eve1_5, Fifth Src homology 3 domain o	2e-08
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	3e-08
cd11833	53	cd11833, SH3_Stac_1, First C-terminal Src homology	3e-08
cd11773	57	cd11773, SH3_Sla1p_1, First Src Homology 3 domain	3e-08
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	3e-08
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	3e-08
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	3e-08
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	4e-08
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	5e-08
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	6e-08
cd11930	55	cd11930, SH3_SH3RF1_2, Second Src Homology 3 domai	6e-08
pfam00018	47	pfam00018, SH3_1, SH3 domain	7e-08
cd11865	55	cd11865, SH3_Nbp2-like, Src Homology 3 domain of S	7e-08
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	1e-07
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	1e-07
cd11872	56	cd11872, SH3_DOCK_AB, Src Homology 3 domain of Cla	1e-07
cd11988	57	cd11988, SH3_Intersectin2_1, First Src homology 3	1e-07
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	2e-07
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	2e-07
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	2e-07
cd11761	57	cd11761, SH3_FCHSD_1, First Src Homology 3 domain	2e-07
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	2e-07
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	2e-07
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	2e-07
cd11876	58	cd11876, SH3_MLK, Src Homology 3 domain of Mixed L	2e-07
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	2e-07
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	2e-07
cd11927	54	cd11927, SH3_SH3RF1_1, First Src Homology 3 domain	2e-07
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	2e-07
cd11843	53	cd11843, SH3_PACSIN, Src homology 3 domain of Prot	3e-07
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	3e-07
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	3e-07
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	4e-07
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	4e-07
cd11929	54	cd11929, SH3_SH3RF2_1, First Src Homology 3 domain	4e-07
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	5e-07
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	5e-07
cd12055	53	cd12055, SH3_CIN85_2, Second Src Homology 3 domain	5e-07
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	5e-07
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	6e-07
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	6e-07
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	6e-07
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	7e-07
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	8e-07
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	8e-07
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	9e-07
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	1e-06
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	1e-06
cd12005	54	cd12005, SH3_Lck, Src homology 3 domain of Lck Pro	1e-06
cd11906	55	cd11906, SH3_BTK, Src Homology 3 domain of Bruton'	1e-06
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	1e-06
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	1e-06
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	2e-06
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	2e-06
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	2e-06
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	2e-06
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	2e-06
cd11942	55	cd11942, SH3_JIP2, Src homology 3 domain of JNK-in	2e-06
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	2e-06
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	2e-06
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	3e-06
cd11901	55	cd11901, SH3_Nck1_2, Second Src Homology 3 domain	3e-06
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	3e-06
cd11943	55	cd11943, SH3_JIP1, Src homology 3 domain of JNK-in	3e-06
cd12051	56	cd12051, SH3_DOCK1_5_A, Src Homology 3 domain of C	3e-06
cd11947	52	cd11947, SH3_GRAP2_N, N-terminal Src homology 3 do	3e-06
cd11985	53	cd11985, SH3_Stac2_C, C-terminal Src homology 3 do	3e-06
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	4e-06
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	4e-06
cd11997	56	cd11997, SH3_PACSIN3, Src homology 3 domain of Pro	4e-06
cd11928	54	cd11928, SH3_SH3RF3_1, First Src Homology 3 domain	4e-06
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	5e-06
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	5e-06
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	5e-06
cd11924	56	cd11924, SH3_Vinexin_2, Second Src Homology 3 doma	6e-06
cd11833	53	cd11833, SH3_Stac_1, First C-terminal Src homology	6e-06
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	6e-06
cd11807	57	cd11807, SH3_ASPP, Src homology 3 domain of Apopto	6e-06
cd11812	52	cd11812, SH3_AHI-1, Src Homology 3 domain of Abels	6e-06
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	7e-06
cd11929	54	cd11929, SH3_SH3RF2_1, First Src Homology 3 domain	7e-06
cd12047	53	cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 do	7e-06
cd12009	54	cd12009, SH3_Blk, Src homology 3 domain of Blk Pro	7e-06
cd11879	56	cd11879, SH3_Bem1p_2, Second Src Homology 3 domain	7e-06
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	8e-06
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	8e-06
cd12022	53	cd12022, SH3_p47phox_2, Second or C-terminal Src h	9e-06
cd11955	53	cd11955, SH3_srGAP1-3, Src homology 3 domain of Sl	9e-06
cd11938	55	cd11938, SH3_ARHGEF16_26, Src homology 3 domain of	9e-06
cd11902	55	cd11902, SH3_Nck2_2, Second Src Homology 3 domain	1e-05
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	1e-05
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	1e-05
cd11778	51	cd11778, SH3_Bzz1_2, Second Src Homology 3 domain	1e-05
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	1e-05
cd11923	57	cd11923, SH3_Sorbs2_2, Second Src Homology 3 domai	2e-05
cd11818	50	cd11818, SH3_Eve1_5, Fifth Src homology 3 domain o	2e-05
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	2e-05
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	2e-05
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	2e-05
cd11928	54	cd11928, SH3_SH3RF3_1, First Src Homology 3 domain	2e-05
cd11758	55	cd11758, SH3_CRK_N, N-terminal Src Homology 3 doma	2e-05
cd11802	52	cd11802, SH3_Endophilin_B, Src homology 3 domain o	2e-05
cd11825	54	cd11825, SH3_PLCgamma, Src homology 3 domain of Ph	2e-05
cd11825	54	cd11825, SH3_PLCgamma, Src homology 3 domain of Ph	2e-05
cd11999	56	cd11999, SH3_PACSIN_like, Src homology 3 domain of	2e-05
cd11889	53	cd11889, SH3_Cyk3p-like, Src Homology 3 domain of	2e-05
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	2e-05
cd11940	55	cd11940, SH3_ARHGEF5_19, Src homology 3 domain of	2e-05
cd12139	72	cd12139, SH3_Bin1, Src Homology 3 domain of Bridgi	2e-05
cd11897	55	cd11897, SH3_SNX18, Src Homology 3 domain of Sorti	2e-05
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	3e-05
cd11776	72	cd11776, SH3_PI3K_p85, Src Homology 3 domain of th	3e-05
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	3e-05
cd11854	56	cd11854, SH3_Fus1p, Src homology 3 domain of yeast	3e-05
cd11887	60	cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 a	3e-05
cd11956	55	cd11956, SH3_srGAP4, Src homology 3 domain of Slit	3e-05
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	4e-05
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	4e-05
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	4e-05
cd11792	55	cd11792, SH3_Fut8, Src homology 3 domain of Alpha1	4e-05
cd11775	57	cd11775, SH3_Sla1p_3, Third Src Homology 3 domain	4e-05
cd11769	57	cd11769, SH3_CSK, Src Homology 3 domain of C-termi	4e-05
cd11896	55	cd11896, SH3_SNX33, Src Homology 3 domain of Sorti	4e-05
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	5e-05
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	5e-05
cd11998	56	cd11998, SH3_PACSIN1-2, Src homology 3 domain of P	5e-05
cd11945	61	cd11945, SH3_Endophilin_B1, Src homology 3 domain	5e-05
cd11858	55	cd11858, SH3_Myosin-I_fungi, Src homology 3 domain	5e-05
cd11779	57	cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain	5e-05
cd11921	55	cd11921, SH3_Vinexin_1, First Src Homology 3 domai	6e-05
cd11876	58	cd11876, SH3_MLK, Src Homology 3 domain of Mixed L	6e-05
cd11927	54	cd11927, SH3_SH3RF1_1, First Src Homology 3 domain	6e-05
cd12048	56	cd12048, SH3_DOCK3_B, Src Homology 3 domain of Cla	6e-05
cd11886	55	cd11886, SH3_BOI, Src Homology 3 domain of fungal	6e-05
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	7e-05
cd11838	52	cd11838, SH3_Intersectin_3, Third Src homology 3 d	7e-05
cd11970	60	cd11970, SH3_PLCgamma1, Src homology 3 domain of P	7e-05
cd12015	53	cd12015, SH3_Tks_1, First Src homology 3 domain of	7e-05
cd11910	75	cd11910, SH3_PI3K_p85alpha, Src Homology 3 domain	7e-05
cd11905	56	cd11905, SH3_Tec, Src Homology 3 domain of Tec (Ty	7e-05
cd11946	56	cd11946, SH3_GRB2_N, N-terminal Src homology 3 dom	7e-05
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	8e-05
cd12055	53	cd12055, SH3_CIN85_2, Second Src Homology 3 domain	8e-05
cd11871	54	cd11871, SH3_p67phox_N, N-terminal (or first) Src	8e-05
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	9e-05
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	1e-04
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	1e-04
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	1e-04
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	1e-04
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	1e-04
cd11948	54	cd11948, SH3_GRAP_N, N-terminal Src homology 3 dom	1e-04
cd11944	55	cd11944, SH3_Endophilin_B2, Src homology 3 domain	1e-04
cd11804	52	cd11804, SH3_GRB2_like_N, N-terminal Src homology	1e-04
cd11829	52	cd11829, SH3_GAS7, Src homology 3 domain of Growth	1e-04
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	2e-04
cd11946	56	cd11946, SH3_GRB2_N, N-terminal Src homology 3 dom	2e-04
cd12074	53	cd12074, SH3_Tks5_1, First Src homology 3 domain o	2e-04
cd12006	56	cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn	2e-04
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	2e-04
cd11770	54	cd11770, SH3_Nephrocystin, Src Homology 3 domain o	2e-04
cd11878	54	cd11878, SH3_Bem1p_1, First Src Homology 3 domain	2e-04
cd11907	55	cd11907, SH3_TXK, Src Homology 3 domain of TXK, al	2e-04
cd11962	54	cd11962, SH3_Abp1_fungi_C1, First C-terminal Src h	3e-04
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	3e-04
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	3e-04
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	3e-04
cd12024	53	cd12024, SH3_NoxO1_2, Second or C-terminal Src hom	3e-04
cd12008	56	cd12008, SH3_Src, Src homology 3 domain of Src Pro	3e-04
cd11847	58	cd11847, SH3_Brk, Src homology 3 domain of Brk (Br	3e-04
cd11767	56	cd11767, SH3_Nck_3, Third Src Homology 3 domain of	3e-04
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	4e-04
cd11985	53	cd11985, SH3_Stac2_C, C-terminal Src homology 3 do	4e-04
cd11871	54	cd11871, SH3_p67phox_N, N-terminal (or first) Src	4e-04
cd11992	52	cd11992, SH3_Intersectin2_3, Third Src homology 3	4e-04
cd11911	55	cd11911, SH3_CIP4-like, Src Homology 3 domain of C	4e-04
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	4e-04
cd11801	55	cd11801, SH3_JIP1_like, Src homology 3 domain of J	5e-04
cd11897	55	cd11897, SH3_SNX18, Src Homology 3 domain of Sorti	5e-04
cd11810	50	cd11810, SH3_RUSC1_like, Src homology 3 domain of	5e-04
cd11800	57	cd11800, SH3_DNMBP_C2_like, Second C-terminal Src	5e-04
cd12016	54	cd12016, SH3_Tks_2, Second Src homology 3 domain o	5e-04
cd12058	58	cd12058, SH3_MLK4, Src Homology 3 domain of Mixed	6e-04
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	6e-04
cd11774	52	cd11774, SH3_Sla1p_2, Second Src Homology 3 domain	6e-04
cd12007	58	cd12007, SH3_Yes, Src homology 3 domain of Yes Pro	6e-04
cd11895	58	cd11895, SH3_FCHSD1_2, Second Src Homology 3 domai	7e-04
cd11969	55	cd11969, SH3_PLCgamma2, Src homology 3 domain of P	7e-04
cd11894	56	cd11894, SH3_FCHSD2_2, Second Src Homology 3 domai	7e-04
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	8e-04
cd11909	74	cd11909, SH3_PI3K_p85beta, Src Homology 3 domain o	8e-04
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	8e-04
cd11794	51	cd11794, SH3_DNMBP_N1, First N-terminal Src homolo	8e-04
cd11843	53	cd11843, SH3_PACSIN, Src homology 3 domain of Prot	9e-04
cd11958	51	cd11958, SH3_RUSC1, Src homology 3 domain of RUN a	9e-04
cd11780	55	cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Ho	0.001
cd11783	55	cd11783, SH3_SH3RF_3, Third Src Homology 3 domain	0.001
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	0.001
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	0.001
cd11940	55	cd11940, SH3_ARHGEF5_19, Src homology 3 domain of	0.001
cd11858	55	cd11858, SH3_Myosin-I_fungi, Src homology 3 domain	0.001
cd11970	60	cd11970, SH3_PLCgamma1, Src homology 3 domain of P	0.001
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	0.001
cd11966	56	cd11966, SH3_ASAP2, Src homology 3 domain of ArfGA	0.001
cd11768	54	cd11768, SH3_Tec_like, Src Homology 3 domain of Te	0.001
cd11759	57	cd11759, SH3_CRK_C, C-terminal Src Homology 3 doma	0.001
cd11884	56	cd11884, SH3_MYO15, Src Homology 3 domain of Myosi	0.001
cd12012	62	cd12012, SH3_RIM-BP_2, Second Src homology 3 domai	0.001
cd11939	55	cd11939, SH3_ephexin1, Src homology 3 domain of th	0.001
cd11789	55	cd11789, SH3_Nebulin_family_C, C-terminal Src Homo	0.002
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	0.002
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	0.002
cd11758	55	cd11758, SH3_CRK_N, N-terminal Src Homology 3 doma	0.002
cd11992	52	cd11992, SH3_Intersectin2_3, Third Src homology 3	0.002
cd11794	51	cd11794, SH3_DNMBP_N1, First N-terminal Src homolo	0.002
cd11957	52	cd11957, SH3_RUSC2, Src homology 3 domain of RUN a	0.002
cd12014	62	cd12014, SH3_RIM-BP_1, First Src homology 3 domain	0.002
cd12050	56	cd12050, SH3_DOCK2_A, Src Homology 3 domain of Cla	0.002
cd11922	58	cd11922, SH3_Sorbs1_2, Second Src Homology 3 domai	0.003
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	0.003
cd11778	51	cd11778, SH3_Bzz1_2, Second Src Homology 3 domain	0.003
cd11889	53	cd11889, SH3_Cyk3p-like, Src Homology 3 domain of	0.003
cd11969	55	cd11969, SH3_PLCgamma2, Src homology 3 domain of P	0.003
cd11954	57	cd11954, SH3_ASPP1, Src Homology 3 domain of Apopt	0.003
cd11851	62	cd11851, SH3_RIM-BP, Src homology 3 domains of Rab	0.003
cd11991	52	cd11991, SH3_Intersectin1_3, Third Src homology 3	0.003
cd11935	58	cd11935, SH3_Nebulette_C, C-terminal Src Homology	0.004
cd11894	56	cd11894, SH3_FCHSD2_2, Second Src Homology 3 domai	0.004
cd11899	58	cd11899, SH3_Nck2_1, First Src Homology 3 domain o	0.004
cd11987	55	cd11987, SH3_Intersectin1_1, First Src homology 3	0.004
cd12053	56	cd12053, SH3_CD2AP_1, First Src Homology 3 domain	0.004
cd11986	53	cd11986, SH3_Stac3_1, First C-terminal Src homolog	0.004
cd11849	53	cd11849, SH3_SPIN90, Src homology 3 domain of SH3	0.004
cd11832	50	cd11832, SH3_Shank, Src homology 3 domain of SH3 a	0.004

>gnl|CDD|212714 cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score =  122 bits (307), Expect = 6e-37
 Identities = 41/55 (74%), Positives = 49/55 (89%)

Query: 98  PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
            Y ALY+Y PQN+DELELREG+ V+VMEKCDDGW+VG+S+R+G FGTFPGNYV R
Sbjct: 1   RYRALYSYTPQNEDELELREGDIVYVMEKCDDGWFVGTSERTGLFGTFPGNYVAR 55

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the third SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 97.8 bits (244), Expect = 2e-27
 Identities = 34/52 (65%), Positives = 44/52 (84%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          +ARAK+NF A T +ELS  KG+++TL RRVD NW+EGRIG R+GIFPV+YV+
Sbjct: 1  EARAKYNFNADTGVELSFRKGDVITLTRRVDENWYEGRIGGRQGIFPVSYVQ 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212850 cd11917, SH3_Sorbs2_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 97.4 bits (242), Expect = 3e-27
 Identities = 39/60 (65%), Positives = 49/60 (81%)

Query: 93  HSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
                P+ ALYNY P+N+DELELREG+ + VMEKCDDGW+VG+S+R+  FGTFPGNYV+R
Sbjct: 1   QGGGEPFQALYNYMPRNEDELELREGDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKR 60

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212851 cd11918, SH3_Vinexin_3, Third (or C-terminal) Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 96.6 bits (240), Expect = 8e-27
 Identities = 37/53 (69%), Positives = 46/53 (86%)

Query: 98  PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           PY A+Y Y+PQN+DELELREG+ V VM++CDDGW+VG S+R+  FGTFPGNYV
Sbjct: 3   PYKAVYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 55

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212849 cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 96.2 bits (239), Expect = 1e-26
 Identities = 39/55 (70%), Positives = 47/55 (85%)

Query: 97  VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
             Y ALY+Y PQNDDELELR+G+ V VMEKCDDGW+VG+S+R+  FGTFPGNYV+
Sbjct: 2   YSYQALYSYAPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 56

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212717 cd11783, SH3_SH3RF_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 85.9 bits (213), Expect = 9e-23
 Identities = 34/52 (65%), Positives = 38/52 (73%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           Y ALY YKPQ  DELELR+GE   V EKC DGW+ G+S R+G  G FPGNYV
Sbjct: 2   YVALYPYKPQKPDELELRKGEMYTVTEKCQDGWFKGTSLRTGQSGVFPGNYV 53

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212858 cd11925, SH3_SH3RF3_3, Third Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 79.3 bits (195), Expect = 3e-20
 Identities = 34/52 (65%), Positives = 40/52 (76%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           Y ALY YKPQ +DELELR+GE   V+EKC DGW+ G+S R+G  G FPGNYV
Sbjct: 3   YLALYAYKPQKNDELELRKGEMYRVIEKCQDGWFKGTSLRTGVSGVFPGNYV 54

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212856 cd11923, SH3_Sorbs2_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 75.7 bits (186), Expect = 9e-19
 Identities = 34/55 (61%), Positives = 46/55 (83%), Gaps = 2/55 (3%)

Query: 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GT-RRGIFPVTYVE 72
          G+A AK+NF A T++ELSL KG+ V L+++VD NW+EG+I GT R+GIFPV+YVE
Sbjct: 1  GEAVAKYNFNADTNVELSLRKGDRVVLLKQVDQNWYEGKIPGTNRQGIFPVSYVE 55

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212855 cd11922, SH3_Sorbs1_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 74.6 bits (183), Expect = 2e-18
 Identities = 32/55 (58%), Positives = 43/55 (78%), Gaps = 2/55 (3%)

Query: 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG--TRRGIFPVTYVE 72
          G+A AKFNF   T +E+S  KGE +TL+R+VD NW+EGRI   +R+GIFP+TYV+
Sbjct: 1  GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 55

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 72.8 bits (179), Expect = 1e-17
 Identities = 26/51 (50%), Positives = 36/51 (70%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          ARA + F AQ+  ELSL KG+++ + R++D NW+EG    R GIFP +YVE
Sbjct: 2  ARALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEGEHNGRVGIFPASYVE 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212725 cd11791, SH3_UBASH3, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing proteins, also called TULA (T cell Ubiquitin LigAnd) family of proteins

 Score = 71.6 bits (176), Expect = 3e-17
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 99  YHALYNYKPQNDDELELREGETVFV----MEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
              LY Y PQ +DELEL  G+ ++V    ++   DGW  G+S  +GC G  P NY E+
Sbjct: 2   LRVLYPYTPQEEDELELVPGDYIYVSPEELDSSSDGWVEGTSWLTGCSGLLPENYTEK 59

UBASH3 or TULA proteins are also referred to as Suppressor of T cell receptor Signaling (STS) proteins. They contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. In some vertebrates, there are two TULA family proteins, called UBASH3A (also called TULA or STS-2) and UBASH3B (also called TULA-2 or STS-1), which show partly overlapping as well as distinct functions. UBASH3B is widely expressed while UBASH3A is only found in lymphoid cells. UBASH3A facilitates apoptosis induced in T cells through its interaction with the apoptosis-inducing factor AIF. UBASH3B is an active phosphatase while UBASH3A is not. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212859 cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1, an E3 ubiquitin-protein ligase

 Score = 70.8 bits (173), Expect = 6e-17
 Identities = 28/52 (53%), Positives = 36/52 (69%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           Y A+Y Y P+ +DELELR+GE   V E+C DGW+ G+S  +   G FPGNYV
Sbjct: 2   YVAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIGVFPGNYV 53

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 70.6 bits (174), Expect = 8e-17
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 95  DPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           +     ALY+Y  Q+ DEL  ++G+ + V+EK DDGW+ G   R G  G FP NYVE
Sbjct: 1   EGPQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGR-GKEGLFPSNYVE 56

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 67.3 bits (164), Expect = 1e-15
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           ARAKF+F AQT  EL L KG++V + +++D NW+EG    R GIFP +Y+E
Sbjct: 2  PARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRSYIE 53

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 67.3 bits (165), Expect = 1e-15
 Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 98  PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           P    +NY+ Q +DEL LR+G+ V V+EK  DGW+ G     G  G FP NYV  
Sbjct: 1   PAVVKFNYEAQREDELSLRKGDRVLVLEKSSDGWWRGECN--GQVGWFPSNYVTE 53

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 65.3 bits (160), Expect = 8e-15
 Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVE 72
             Q RA +++ AQ   ELS  KG+++T++ + D+ W++GR+G  + G+FP  YVE
Sbjct: 1  EGPQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVE 56

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 64.8 bits (159), Expect = 1e-14
 Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNY 149
           ALY+Y+ Q+DDEL  ++G+ + V+EK DDGW+ G     G  G FP NY
Sbjct: 4   ALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELNG-GREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212719 cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 65.2 bits (159), Expect = 1e-14
 Identities = 27/53 (50%), Positives = 39/53 (73%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           Y  +  Y PQ++ ELEL+EG+ VFV +K +DGW+ G+ QR+G  G FPG++VE
Sbjct: 2   YRVIVPYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRTGKTGLFPGSFVE 54

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the fourth SH3 domain, located at the C-terminus of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 63.9 bits (155), Expect = 3e-14
 Identities = 27/52 (51%), Positives = 38/52 (73%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
          ARA ++F AQT  ELS  KG+ V ++R++D NW+EG    R GIFP++YVE+
Sbjct: 3  ARAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEK 54

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212723 cd11789, SH3_Nebulin_family_C, C-terminal Src Homology 3 domain of the Nebulin family of proteins

 Score = 63.5 bits (155), Expect = 3e-14
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           Y A+Y+Y   +DDE+  +EG+ +  +E  DDGW  G+ QR+G  G  P NYVE
Sbjct: 2   YRAMYDYAAADDDEVSFQEGDVIINVEIIDDGWMEGTVQRTGQSGMLPANYVE 54

Nebulin family proteins contain multiple nebulin repeats, and may contain an N-terminal LIM domain and/or a C-terminal SH3 domain. They have molecular weights ranging from 34 to 900 kD, depending on the number of nebulin repeats, and they all bind actin. They are involved in the regulation of actin filament architecture and function as stabilizers and scaffolds for cytoskeletal structures with which they associate, such as long actin filaments or focal adhesions. Nebulin family proteins that contain a C-terminal SH3 domain include the giant filamentous protein nebulin, nebulette, Lasp1, and Lasp2. Lasp2, also called LIM-nebulette, is an alternatively spliced variant of nebulette. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212857 cd11924, SH3_Vinexin_2, Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 63.1 bits (153), Expect = 5e-14
 Identities = 29/55 (52%), Positives = 40/55 (72%), Gaps = 2/55 (3%)

Query: 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GT-RRGIFPVTYVE 72
          G+A A++ F     +ELS  KGE + LIR+V+ NW+EGRI GT R+GIFP +YV+
Sbjct: 1  GEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQ 55

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 62.0 bits (151), Expect = 1e-13
 Identities = 27/51 (52%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+Y    DDEL  +EG+ ++V +K DDGWY G    +G  G FPGNYVE
Sbjct: 4   ALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVL--NGVTGLFPGNYVE 52

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 61.9 bits (151), Expect = 2e-13
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
            RA ++F  +   EL   +G+++TL  ++D NW+EG +  + G FPV YVE
Sbjct: 2  CCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMVNGQSGFFPVNYVE 53

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 60.9 bits (149), Expect = 3e-13
 Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTY 70
           ARA +++ AQ   ELS  KG+++T++ + D+ W+EG + G R G+FP  Y
Sbjct: 1  YARALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELNGGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 60.7 bits (148), Expect = 4e-13
 Identities = 17/52 (32%), Positives = 32/52 (61%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          + +A ++F  Q   EL   +G+++T++   D +W++G +  R GIFP  YV+
Sbjct: 1  RVQALYDFNPQEPGELEFRRGDIITVLDSSDPDWWKGELRGRVGIFPANYVQ 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212854 cd11921, SH3_Vinexin_1, First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 60.7 bits (147), Expect = 5e-13
 Identities = 27/51 (52%), Positives = 34/51 (66%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          AR KF+F AQ+  EL+L KG++V + + VD NW EG    R GIFP  YVE
Sbjct: 3  ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRVGIFPANYVE 53

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 60.5 bits (147), Expect = 6e-13
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 2/53 (3%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           Y  LY+Y  Q DDEL + +G+ V V+EK +DGW+    +R+G  G  PG Y+E
Sbjct: 2   YSVLYDYTAQEDDELSISKGDVVAVIEKGEDGWWT--VERNGQKGLVPGTYLE 52

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212870 cd11937, SH3_UBASH3A, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing protein A

 Score = 60.4 bits (146), Expect = 7e-13
 Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 101 ALYNYKPQNDDELELREGETVFV----MEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           AL+ YKPQN DEL L  G+ +FV      +  +GW +G S R+GC G  P NY ER
Sbjct: 5   ALFQYKPQNIDELMLSPGDYIFVDPTQQSEASEGWVIGISHRTGCRGFLPENYTER 60

UBASH3A is also called Cbl-Interacting Protein 4 (CLIP4), T cell Ubiquitin LigAnd (TULA), or T cell receptor Signaling (STS)-2. It is only found in lymphoid cells and exhibits weak phosphatase activity. UBASH3A facilitates T cell-induced apoptosis through interaction with the apoptosis-inducing factor AIF. It is involved in regulating the level of phosphorylation of the zeta-associated protein (ZAP)-70 tyrosine kinase. TULA proteins contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 59.7 bits (145), Expect = 9e-13
 Identities = 22/54 (40%), Positives = 37/54 (68%), Gaps = 2/54 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPVTYVE 72
          +A A ++F  +   +L+  KG+++T++++ D  N+W+ GRIG R GIFP  YVE
Sbjct: 1  KAVALYDFAGEQPGDLAFQKGDIITILKKSDSQNDWWTGRIGGREGIFPANYVE 54

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 60.0 bits (146), Expect = 9e-13
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+Y+   D+E+   EG+ +  +E+ D+GW++G +   G  G FP NYVE
Sbjct: 4   ALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVN-AKGQKGLFPANYVE 53

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 58.5 bits (141), Expect = 4e-12
 Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A+Y+Y    DDEL   EG  ++V++K DDGWY G    +G  G FPGNYVE
Sbjct: 4   AIYDYSKDKDDELSFMEGAIIYVIKKNDDGWYEGVC--NGVTGLFPGNYVE 52

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212868 cd11935, SH3_Nebulette_C, C-terminal Src Homology 3 domain of Nebulette and LIM-nebulette (or Lasp2)

 Score = 58.1 bits (140), Expect = 5e-12
 Identities = 21/53 (39%), Positives = 35/53 (66%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           Y A+Y+Y  Q++DE+  R+G+ +  ++  D+GW  G+ QR+G  G  P NY+E
Sbjct: 3   YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDEGWMYGTVQRTGRTGMLPANYIE 55

Nebulette is a cardiac-specific protein that localizes to the Z-disc. It interacts with tropomyosin and is important in stabilizing actin thin filaments in cardiac muscles. Polymorphisms in the nebulette gene are associated with dilated cardiomyopathy, with some mutations resulting in severe heart failure. Nebulette is a 107kD protein that contains an N-terminal acidic region, multiple nebulin repeats, and a C-terminal SH3 domain. LIM-nebulette, also called Lasp2 (LIM and SH3 domain protein 2), is an alternatively spliced variant of nebulette. Although it shares a gene with nebulette, Lasp2 is not transcribed from a muscle-specific promoter, giving rise to its multiple tissue expression pattern with highest amounts in the brain. It can crosslink actin filaments and it affects cell spreading. Lasp2 is a 34kD protein containing an N-terminal LIM domain, three nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 57.7 bits (140), Expect = 6e-12
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           + ALY+Y+ Q+ DEL   EG+ +++ +K D  W+  +    G  G  P NYVE
Sbjct: 2   FRALYDYEAQHPDELSFEEGDLLYISDKSDPNWWKATCG--GKTGLIPSNYVE 52

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 57.0 bits (138), Expect = 1e-11
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          A+A +N+  +   +LS  KG+++ L +R+D NW+ G    ++G FP +YV+
Sbjct: 2  AKALYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGECNGKQGFFPASYVQ 52

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 56.6 bits (137), Expect = 1e-11
 Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
            L++Y PQN+DELEL+ G+T+ V+ + ++GW+ G    +G  G FP N+V+
Sbjct: 4   VLFSYTPQNEDELELKVGDTIEVLGEVEEGWWEGK--LNGKVGVFPSNFVK 52

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212721 cd11787, SH3_SH3RF_2, Second Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 56.2 bits (136), Expect = 2e-11
 Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 3/53 (5%)

Query: 21 QARAKFNF-VAQTHLE--LSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY 70
          Q +A ++F +     +  L+  KG+++T+IRRVD NW EGR+G + GIFP+++
Sbjct: 1  QCKALYDFEMKDEDEKDCLTFKKGDVITVIRRVDENWAEGRLGDKIGIFPISF 53

This model represents the second SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 56.6 bits (136), Expect = 2e-11
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           A+Y+Y    +DEL  +EG  ++V++K DDGWY G    +G  G FPGNYVE   
Sbjct: 7   AIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGV--MNGVTGLFPGNYVESIM 58

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212718 cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 56.3 bits (136), Expect = 2e-11
 Identities = 23/52 (44%), Positives = 31/52 (59%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
             AL++Y     +ELEL++GE V V+ K  +GW  G S  +G  G FP NYV
Sbjct: 2   CVALHSYSAHRPEELELQKGEGVRVLGKFQEGWLRGLSLVTGRVGIFPSNYV 53

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212743 cd11809, SH3_srGAP, Src homology 3 domain of Slit-Robo GTPase Activating Proteins

 Score = 55.9 bits (135), Expect = 3e-11
 Identities = 17/51 (33%), Positives = 34/51 (66%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
          +A A+F++  ++  ELS  KG+ +TL R+V ++W+ G++  + G+ P  Y+
Sbjct: 1  EATAQFDYTGRSERELSFKKGDSLTLYRQVSDDWWRGQLNGQDGLVPHKYI 51

Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs (srGAP1-3), all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. A fourth member has also been reported (srGAP4, also called ARHGAP4). srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212802 cd11869, SH3_p40phox, Src Homology 3 domain of the p40phox subunit of NADPH oxidase

 Score = 56.0 bits (135), Expect = 3e-11
 Identities = 19/52 (36%), Positives = 34/52 (65%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          +A A F+F   + LEL+   G+++ L+ RV+ +W EG +    GIFP+++V+
Sbjct: 1  RAEALFDFTGNSKLELNFKAGDVIFLLSRVNKDWLEGTVRGATGIFPLSFVK 52

p40phox, also called Neutrophil cytosol factor 4 (NCF-4), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. It contains an N-terminal PX domain, a central SH3 domain, and a C-terminal PB1 domain that interacts with p67phox. The SH3 domain of p40phox binds to canonical polyproline and noncanonical motifs at the C-terminus of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 55.8 bits (135), Expect = 3e-11
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+Y    +DEL L+ G+ + V EK DDGW++G    +G  G FP  YVE
Sbjct: 4   ALYSYTANREDELSLQPGDIIEVHEKQDDGWWLGEL--NGKKGIFPATYVE 52

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 55.1 bits (133), Expect = 5e-11
 Identities = 22/51 (43%), Positives = 30/51 (58%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
          QAR   +  AQ   EL L +G++VT+   +D  WF G +  RRGIFP  +V
Sbjct: 1  QARVLQDLSAQLDEELDLREGDVVTITGILDKGWFRGELNGRRGIFPEGFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 55.0 bits (133), Expect = 6e-11
 Identities = 23/51 (45%), Positives = 28/51 (54%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
            ++ Y  Q  DEL L EG+ V V+ K  DGWY G   R G  G FP +Y E
Sbjct: 4   CVHAYTAQQPDELTLEEGDVVNVLRKMPDGWYEGERLRDGERGWFPSSYTE 54

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212834 cd11901, SH3_Nck1_2, Second Src Homology 3 domain of Nck1 adaptor protein

 Score = 54.3 bits (130), Expect = 1e-10
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 97  VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           +P +  +NY  + +DEL L +G  V VMEKC DGW+ GS   +G  G FP NYV
Sbjct: 2   LPAYVKFNYTAEREDELSLVKGTKVIVMEKCSDGWWRGSY--NGQVGWFPSNYV 53

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212866 cd11933, SH3_Nebulin_C, C-terminal Src Homology 3 domain of Nebulin

 Score = 54.2 bits (130), Expect = 2e-10
 Identities = 21/53 (39%), Positives = 36/53 (67%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           + A+Y+Y+  +DDE+  ++G+T+  ++  D+GW  G+ QR+G  G  P NYVE
Sbjct: 4   FRAMYDYRAADDDEVSFKDGDTIVNVQTIDEGWMYGTVQRTGKTGMLPANYVE 56

Nebulin is a giant filamentous protein (600-900 kD) that is expressed abundantly in skeletal muscle. It binds to actin thin filaments and regulates its assembly and function. Nebulin was thought to be part of a molecular ruler complex that is critical in determining the lengths of actin thin filaments in skeletal muscle since its length, which varies due to alternative splicing, correlates with the length of thin filaments in various muscle types. Recent studies indicate that nebulin regulates thin filament length by stabilizing the filaments and preventing depolymerization. Mutations in nebulin can cause nemaline myopathy, characterized by muscle weakness which can be severe and can lead to neonatal lethality. Nebulin contains an N-terminal LIM domain, many nebulin repeats/super repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 53.9 bits (130), Expect = 2e-10
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEK-CDD-GWYVGSSQRSGCFGTFPGNYVE 151
              L++Y+ +N+DEL LREG+ V ++ K C+D GW+ G     G  G FP N+VE
Sbjct: 2   ARVLFDYEAENEDELTLREGDIVTILSKDCEDKGWWKGELN--GKRGVFPDNFVE 54

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212869 cd11936, SH3_UBASH3B, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing protein B

 Score = 53.9 bits (129), Expect = 2e-10
 Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 102 LYNYKPQNDDELELREGETVFV--MEK--CDDGWYVGSSQRSGCFGTFPGNYVERA 153
           +Y Y PQNDDELEL  G+ +F+  ME+    +GW  G+S  +GC G  P NY+ +A
Sbjct: 7   IYPYTPQNDDELELVPGDYIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKA 62

UBASH3B, also called Suppressor of T cell receptor Signaling (STS)-1 or T cell Ubiquitin LigAnd (TULA)-2 is an active phosphatase that is expressed ubiquitously. The phosphatase activity of UBASH3B is essential for its roles in the suppression of TCR signaling and the regulation of EGFR. It also interacts with Syk and functions as a negative regulator of platelet glycoprotein VI signaling. TULA proteins contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212867 cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 domain of LIM and SH3 domain protein 1

 Score = 53.5 bits (128), Expect = 3e-10
 Identities = 21/53 (39%), Positives = 36/53 (67%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           Y A+Y+Y   ++DE+  ++G+T+  +++ DDGW  G+ +R+G  G  P NYVE
Sbjct: 5   YRAVYDYNAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVE 57

Lasp1 is a cytoplasmic protein that binds focal adhesion proteins and is involved in cell signaling, migration, and proliferation. It is overexpressed in several cancer cells including breast, ovarian, bladder, and liver. In cancer cells, it can be found in the nucleus; its degree of nuclear localization correlates with tumor size and poor prognosis. Lasp1 is a 36kD protein containing an N-terminal LIM domain, two nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 52.7 bits (127), Expect = 4e-10
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY +K Q+  EL L++G+ +++  + D  WY G    +G  G FP +YVE
Sbjct: 4   ALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEGE--HNGRVGIFPASYVE 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 52.3 bits (125), Expect = 6e-10
 Identities = 21/50 (42%), Positives = 35/50 (70%), Gaps = 2/50 (4%)

Query: 102 LYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           L+ Y PQN+DELEL+ G+ + + E+ ++GW+ G+   +G  G FP N+V+
Sbjct: 6   LFEYVPQNEDELELKVGDIIDINEEVEEGWWSGTL--NGKSGLFPSNFVK 53

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212895 cd11962, SH3_Abp1_fungi_C1, First C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 52.5 bits (126), Expect = 7e-10
 Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 102 LYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           LY+Y+   D+E+EL EGE V  +E  D+ W++G++ + G  G FP NYVE
Sbjct: 5   LYDYEKDEDNEIELVEGEIVTNIEMVDEDWWMGTNSK-GESGLFPSNYVE 53

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212735 cd11801, SH3_JIP1_like, Src homology 3 domain of JNK-interacting proteins 1 and 2, and similar domains

 Score = 52.3 bits (126), Expect = 7e-10
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           AL+ + P+++DE+EL  G+ V+V ++ DD W  G++ R+G  G FP  YV
Sbjct: 4   ALHKFIPRHEDEIELDIGDPVYVEQEADDLWCEGTNLRTGQRGIFPAAYV 53

JNK-interacting proteins (JIPs) function as scaffolding proteins for c-Jun N-terminal kinase (JNK) signaling pathways. They bind to components of Mitogen-activated protein kinase (MAPK) pathways such as JNK, MKK, and several MAP3Ks such as MLK and DLK. There are four JIPs (JIP1-4); all contain a JNK binding domain. JIP1 and JIP2 also contain SH3 and Phosphotyrosine-binding (PTB) domains. Both are highly expressed in the brain and pancreatic beta-cells. JIP1 functions as an adaptor linking motor to cargo during axonal transport and also is involved in regulating insulin secretion. JIP2 form complexes with fibroblast growth factor homologous factors (FHFs), which facilitates activation of the p38delta MAPK. The SH3 domain of JIP1 homodimerizes at the interface usually involved in proline-rich ligand recognition, despite the lack of this motif in the domain itself. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+++P+N+ EL  +EG+ + +  + D+ WY G     G  G FP NYVE
Sbjct: 5   ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMVN--GQSGFFPVNYVE 53

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212865 cd11932, SH3_SH3RF2_2, Second Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 51.8 bits (124), Expect = 1e-09
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query: 36 LSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
          L   K +++T+I RVD NW EG++G + GIFP+ +V
Sbjct: 22 LKFQKDDIITVISRVDENWAEGKLGDQVGIFPILFV 57

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 51.1 bits (123), Expect = 2e-09
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
            ALY++ PQ   ELE R G+ + V++  D  W+ G  +  G  G FP NYV+ 
Sbjct: 3   QALYDFNPQEPGELEFRRGDIITVLDSSDPDWWKGELR--GRVGIFPANYVQP 53

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 50.8 bits (122), Expect = 3e-09
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 98  PYHALYNYKPQNDDELELREGETVFVME--KCDDGWYVGSSQRSGCFGTFPGNYVER 152
            Y ALY ++ +N DE+  + G+ + V E    + GW  G  +  G  G FP NYVE+
Sbjct: 1   KYRALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELK--GKTGWFPANYVEK 55

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212835 cd11902, SH3_Nck2_2, Second Src Homology 3 domain of Nck2 adaptor protein

 Score = 50.8 bits (121), Expect = 3e-09
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 97  VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           +P    + Y  + +DEL L +G  V VMEKC DGW+ GS   +G  G FP NYV
Sbjct: 1   IPAFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSY--NGQIGWFPSNYV 52

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 50.4 bits (121), Expect = 3e-09
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
            RAKFNF      ELS  KG+++T+ + V+  W+EG +  + G FP  YV+
Sbjct: 1  LVRAKFNFEGTNEDELSFDKGDIITVTQVVEGGWWEGTLNGKTGWFPSNYVK 52

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 50.4 bits (120), Expect = 4e-09
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 98  PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           P  A+Y++K Q   EL  ++G+TV+++ K D  WY G  +  G  G FP +YVE+
Sbjct: 2   PARAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEG--EHHGRVGIFPISYVEK 54

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 49.9 bits (120), Expect = 4e-09
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFP 146
           ALY+Y  +  DEL  ++G+ + V+EK DDGW+ G  +     G  P
Sbjct: 2   ALYDYTAREPDELSFKKGDIIIVLEKSDDGWWKGRLKGGK-EGLIP 46

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 49.9 bits (120), Expect = 5e-09
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDG-WYVGSSQRSGCFGTFPGNYVER 152
           Y A+ +Y+ Q DDE+ L+EGE V V+EK D G WYV    + G     P +Y+E 
Sbjct: 2   YVAIADYEAQGDDEISLQEGEVVEVLEKNDSGWWYVRKGDKEGW---VPASYLEP 53

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212864 cd11931, SH3_SH3RF3_2, Second Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 49.5 bits (118), Expect = 8e-09
 Identities = 20/36 (55%), Positives = 27/36 (75%)

Query: 36 LSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
          L+  K E++T+IRRVD NW EG +G + GIFP+ YV
Sbjct: 20 LTFTKDEILTVIRRVDENWAEGMLGDKIGIFPILYV 55

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 49.4 bits (119), Expect = 8e-09
 Identities = 24/51 (47%), Positives = 34/51 (66%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           R  F++VA    ELSL KG++V ++ + DN W+EG  G RRG+ P +YVE
Sbjct: 2  GRVIFDYVATDPNELSLKKGDVVKVLDKDDNGWWEGERGGRRGLVPSSYVE 52

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 48.0 bits (115), Expect = 2e-08
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           A  KFN+ AQ   ELSL KG+ V ++ +  + W+ G    + G FP  YV 
Sbjct: 1  PAVVKFNYEAQREDELSLRKGDRVLVLEKSSDGWWRGECNGQVGWFPSNYVT 52

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212724 cd11790, SH3_Amphiphysin, Src Homology 3 domain of Amphiphysin and related domains

 Score = 48.9 bits (117), Expect = 2e-08
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 5/57 (8%)

Query: 101 ALYNYKPQNDDELELREGETVFVM-----EKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           A ++Y  ++ DEL   +G+ + V+     E+ D+GW +G  + +GC G FP N+ ER
Sbjct: 7   ATHDYTAEDTDELTFEKGDVILVIPFDDPEEQDEGWLMGVKESTGCRGVFPENFTER 63

Amphiphysins function primarily in endocytosis and other membrane remodeling events. They exist in several isoforms and mammals possess two amphiphysin proteins from distinct genes. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin, and synaptojanin. They function in synaptic vesicle endocytosis. Human autoantibodies to amphiphysin I hinder GABAergic signaling and contribute to the pathogenesis of paraneoplastic stiff-person syndrome. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. Mutations in Bin1 are associated with autosomal recessive centronuclear myopathy. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. The SH3 domain of amphiphysins bind proline-rich motifs present in binding partners such as dynamin, synaptojanin, and nsP3. It also belongs to a subset of SH3 domains that bind ubiquitin in a site that overlaps with the peptide binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 64

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+Y+ + DDE+     ET+  +E  D+GW+ G+    G  G FP NYVE
Sbjct: 5   ALYDYQGEGDDEISFDPQETITDIEMVDEGWWKGTCH--GHRGLFPANYVE 53

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+Y+  +D E+    G+ +  +E+ D+GW+ G+    G +G FP NYVE
Sbjct: 4   ALYDYQAADDTEISFDPGDIITDIEQIDEGWWRGTGP-DGTYGLFPANYVE 53

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 48.2 bits (115), Expect = 2e-08
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           AL+ Y  QN+DEL  ++G+ + V+ K D  W+ G  + +G  G FP NYVE
Sbjct: 4   ALFPYTAQNEDELSFQKGDIINVLSKDDPDWWRG--ELNGQTGLFPSNYVE 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212991 cd12058, SH3_MLK4, Src Homology 3 domain of Mixed Lineage Kinase 4

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 7/59 (11%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEK-----CDDGWYVGSSQRSGCFGTFPGNYVER 152
           + ALY+Y+   +DEL LR G+ V V+ +      DDGW+ G  +     G FP NYV R
Sbjct: 2   WTALYDYEASGEDELSLRRGDVVEVLSQDAAVSGDDGWWAGKIRHR--LGIFPANYVTR 58

MLK4 is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. The specific function of MLK4 is yet to be determined. Mutations in the kinase domain of MLK4 have been detected in colorectal cancers. MLK4 contains an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 99  YHALYNYKPQNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVE 151
             ALY++  Q   EL LR GE + +  +   DGW  G + R G  G FP +YVE
Sbjct: 2   VRALYDFDSQPSGELSLRAGEVLTITRQDVGDGWLEGRNSR-GEVGLFPSSYVE 54

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEGRIGTRRGIFPVTYVEQ 73
          A+A+++F A+   ELSL +G++V +  +     W+ G I  R G FP TYVE+
Sbjct: 2  AKARYDFCARDMRELSLKEGDVVKIYNKKGQQGWWRGEINGRIGWFPSTYVEE 54

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212752 cd11818, SH3_Eve1_5, Fifth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 47.9 bits (114), Expect = 2e-08
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY 70
          +ARA ++F  +   ELS   G+++T +  +D  W  G +  + GIFP  +
Sbjct: 1  KARALYDFTGENEDELSFKAGDIITELESIDEEWMSGELRGKSGIFPKNF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 48.0 bits (114), Expect = 3e-08
 Identities = 20/53 (37%), Positives = 35/53 (66%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
          +A  +F++ AQ   EL++  G+++T I++ D  W+EG I  RRG+FP  +V +
Sbjct: 1  EAIVEFDYKAQHEDELTITVGDIITKIKKDDGGWWEGEIKGRRGLFPDNFVRE 53

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212767 cd11833, SH3_Stac_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing (Stac) proteins

 Score = 48.3 bits (115), Expect = 3e-08
 Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 98  PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
            Y ALY +KPQ +++LE+R G+ + +++  ++ W+ G  +     G FP N+V+R
Sbjct: 1   TYVALYKFKPQENEDLEMRPGDKITLLDDSNEDWWKGKIEDR--VGFFPANFVQR 53

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. This model represents the first C-terminal SH3 domain of Stac1 and Stac3, and the single C-terminal SH3 domain of Stac2. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212707 cd11773, SH3_Sla1p_1, First Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 48.2 bits (115), Expect = 3e-08
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWY-----VGSSQRSGCFGTFPGNY 149
           Y ALY+Y+PQ +DEL ++E + ++++EK DD W+     V SS      G  P  Y
Sbjct: 2   YKALYDYEPQTEDELTIQEDDILYLLEKSDDDWWKVKLKVNSSDDDEPVGLVPATY 57

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          A+A +++ A    ELS  + + +  I  VD++W+ G     RG+FP  YVE
Sbjct: 2  AKALYDYDAAEDNELSFFENDKIINIEFVDDDWWLGECHGSRGLFPSNYVE 52

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
           +A+++F A+   +LS  +G+++ ++   D NW+ GRI  R G FP  YV  
Sbjct: 2  VQAQYDFSAEDPSQLSFRRGDIIEVLDCPDPNWWRGRISGRVGFFPRNYVHP 53

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 47.8 bits (114), Expect = 3e-08
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVE 151
              L++Y P   DEL L++G+ + V+ K   D+GW+ G     G  G FP N+V 
Sbjct: 2   CRVLFDYNPVAPDELALKKGDVIEVISKETEDEGWWEGELN--GRRGFFPDNFVM 54

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 47.4 bits (113), Expect = 4e-08
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           ALY Y  Q+ DEL   EG+ + ++++   GW+ G  +  G  G FPGNYVE+
Sbjct: 4   ALYAYDAQDTDELSFNEGDIIEILKEDPSGWWTG--RLRGKEGLFPGNYVEK 53

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 47.0 bits (112), Expect = 5e-08
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          Q  A F + AQ   ELS  KG+++ ++ + D +W+ G +  + G+FP  YVE
Sbjct: 1  QVIALFPYTAQNEDELSFQKGDIINVLSKDDPDWWRGELNGQTGLFPSNYVE 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 46.9 bits (112), Expect = 6e-08
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          RA +++ AQ   ELS  +G+L+ +  + D NW++   G + G+ P  YVE
Sbjct: 3  RALYDYEAQHPDELSFEEGDLLYISDKSDPNWWKATCGGKTGLIPSNYVE 52

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212863 cd11930, SH3_SH3RF1_2, Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 47.3 bits (112), Expect = 6e-08
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 36 LSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
          L   K +++T+IRRVD NW EG +G + GIFP++YV
Sbjct: 20 LPFAKDDILTVIRRVDENWAEGMLGDKIGIFPISYV 55

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 46.8 bits (112), Expect = 7e-08
 Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR-IGTRRGIFPV 68
           A +++ A+   ELS  KG+++ ++ + D+ W++GR  G + G+ P 
Sbjct: 1  VALYDYTAREPDELSFKKGDIIIVLEKSDDGWWKGRLKGGKEGLIPS 47

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212799 cd11865, SH3_Nbp2-like, Src Homology 3 domain of Saccharomyces cerevisiae Nap1-binding protein 2 and similar fungal proteins

 Score = 47.1 bits (112), Expect = 7e-08
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+++P++D+EL   EG+ +F++ K   GW +   +  G  G  P  +V 
Sbjct: 4   ALYDFEPEHDNELGFAEGQILFILYKHGQGWLIAEDESGGKTGLVPEEFVS 54

This subfamily includes Saccharomyces cerevisiae Nbp2 (Nucleosome assembly protein 1 (Nap1)-binding protein 2), Schizosaccharomyces pombe Skb5, and similar proteins. Nbp2 interacts with Nap1, which is essential for maintaining proper nucleosome structures in transcription and replication. It is also the binding partner of the yeast type II protein phosphatase Ptc1p and serves as a scaffolding protein that brings seven kinases in close contact to Ptc1p. Nbp2 plays a role many cell processes including organelle inheritance, mating hormone response, cell wall stress, mitotic cell growth at elevated temperatures, and high osmolarity. Skb5 interacts with the p21-activated kinase (PAK) homolog Shk1, which is critical for fission yeast cell viability. Skb5 activates Shk1 and plays a role in regulating cell morphology and growth under hypertonic conditions. Nbp2 and Skb5 contain an SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 19/55 (34%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVEQ 73
          +AR  F++ A+   EL+L +G++VT++ +   D  W++G +  +RG+FP  +VE 
Sbjct: 1  KARVLFDYEAENEDELTLREGDIVTILSKDCEDKGWWKGELNGKRGVFPDNFVEP 55

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 46.5 bits (110), Expect = 1e-07
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
            +Y+Y  QNDDEL   +G+ + V+ K D  W+ G  + +G  G FP NYV+
Sbjct: 5   GMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKG--ELNGQVGLFPSNYVK 53

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212805 cd11872, SH3_DOCK_AB, Src Homology 3 domain of Class A and B Dedicator of Cytokinesis proteins

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRS-GCFGTFPGNYV 150
           A+YN++   + +L L+ G+TV ++E+C +GWY G S R+    G FP +YV
Sbjct: 4   AIYNFQGDGEHQLSLQVGDTVQILEEC-EGWYRGFSLRNKSLKGIFPKSYV 53

DOCK proteins are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. They are divided into four classes (A-D) based on sequence similarity and domain architecture: class A includes Dock1, 2 and 5; class B includes Dock3 and 4; class C includes Dock6, 7, and 8; and class D includes Dock9, 10 and 11. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. This subfamily includes only Class A and B DOCKs, which also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus. Class A/B DOCKs are mostly specific GEFs for Rac, except Dock4 which activates the Ras family GTPase Rap1, probably indirectly through interaction with Rap regulatory proteins. The SH3 domain of class A/B DOCKs have been shown to bind Elmo, a scaffold protein that promotes GEF activity of DOCKs by releasing DHR-2 autoinhibition by the intramolecular SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212921 cd11988, SH3_Intersectin2_1, First Src homology 3 domain (or SH3A) of Intersectin-2

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 97  VPYHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVER 152
           V Y ALY ++ +N DE+    G+ + V EK   + GW  GS Q  G FG FP NYVE+
Sbjct: 2   VNYRALYPFEARNHDEMSFNAGDIIQVDEKTVGEPGWLYGSFQ--GNFGWFPCNYVEK 57

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN2 is expected to bind many protein partners, similar to ITSN1 which has been shown to bind Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A +N++  N+DEL   +G+ + V +  + GW+ G+   +G  G FP NYV+
Sbjct: 4   AKFNFEGTNEDELSFDKGDIITVTQVVEGGWWEGT--LNGKTGWFPSNYVK 52

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 46.0 bits (109), Expect = 2e-07
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           ALY+Y    D+EL   E + +  +E  DD W++G     G  G FP NYVE 
Sbjct: 4   ALYDYDAAEDNELSFFENDKIINIEFVDDDWWLGECH--GSRGLFPSNYVEL 53

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 45.9 bits (109), Expect = 2e-07
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+Y+  +DDE+     + +  +E  D+GW+ G  +  G +G FP NYVE
Sbjct: 4   ALYDYQAADDDEISFDPDDIITNIEMIDEGWWRGVCR--GKYGLFPANYVE 52

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212695 cd11761, SH3_FCHSD_1, First Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 96  PVPYHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE 151
           PV    LY+Y+ Q  DEL + EGE + V+E  D DGW    ++ SG  G  P NY++
Sbjct: 1   PVTCKVLYSYEAQRPDELTITEGEELEVIEDGDGDGWVKARNK-SGEVGYVPENYLQ 56

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 20 GQARAKFNFVAQTHLELSLVKGELVTL-IRRVDNNWFEGRIGTRRGIFPVTYVEQQ 74
          G A A+++F A+   ELSL+KG++V +  +   N W+ G +  R G FP TYVE+ 
Sbjct: 1  GIAIARYDFCARDMRELSLLKGDVVKIYTKMSTNGWWRGEVNGRVGWFPSTYVEED 56

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 45.9 bits (109), Expect = 2e-07
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           ALY+++   D+EL  + GE + V++  D  W+ GS+ R    G FP N+V  
Sbjct: 5   ALYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGSNHRGE--GLFPANFVTA 54

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVEQQ 74
          G A A++NF A+   ELSL +G++V +  R+  D  W++G    R G FP TYVE++
Sbjct: 1  GTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEE 57

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212809 cd11876, SH3_MLK, Src Homology 3 domain of Mixed Lineage Kinases

 Score = 46.0 bits (109), Expect = 2e-07
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 7/55 (12%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEK-----CDDGWYVGSSQRSGCFGTFPGNYV 150
           AL++Y  + +DEL LR G+ V V+ K      D+GW+ G        G FP NYV
Sbjct: 4   ALFDYDARGEDELTLRRGQPVEVLSKDAAVSGDEGWWTGKIGDK--VGIFPSNYV 56

MLKs are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Mammals have four MLKs (MLK1-4), mostly conserved in vertebrates, which contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 45.9 bits (109), Expect = 2e-07
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRR----VDNNWFEGRIGTRRGIFPVTYVEQ 73
           RA +++ AQ+  ELS  +G ++ ++R+    VD+ W+EG    R G+FP   VE+
Sbjct: 2  VRALYDYEAQSDEELSFPEGAIIRILRKDDNGVDDGWWEGEFNGRVGVFPSLVVEE 57

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
            A+F+F  +   ELS  +G+++TL   V   W +G +  + GIFP+ +V
Sbjct: 2  CVARFDFEGEQEDELSFSEGDVITLKEYVGEEWAKGELNGKIGIFPLNFV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212860 cd11927, SH3_SH3RF1_1, First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          A+A +N+  +   +L   KG+++ L R+VD NW+ G +    G FP  +V+
Sbjct: 3  AKALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGIHGFFPTNFVQ 53

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 45.4 bits (107), Expect = 2e-07
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
          RAKFNF      ELS  KG+++ + R  +  W+EG    R G FP  YV +
Sbjct: 3  RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 53

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212777 cd11843, SH3_PACSIN, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 45.5 bits (108), Expect = 3e-07
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 98  PYHALYNYKPQNDDELELREGETVFVMEKCDD-GWYVGSSQRSGCFGTFPGNYVE 151
           P  ALY+Y+ Q  DEL  + G+ +  +E+ D+ GW  G     G  G +P NYVE
Sbjct: 1   PVRALYDYEGQESDELSFKAGDILTKLEEEDEQGWCKGRLD--GRVGLYPANYVE 53

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 45.4 bits (107), Expect = 3e-07
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
          +A+FNF      ELS+ KG+++ + R  +  W+EG +  + G FP  YV +
Sbjct: 5  KARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGKTGWFPSNYVRE 55

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIR-RVDNNWFEGRIGTRRGIFPVTYVE 72
          +ARA +   A+   ELS   G+++T ++   +  W EG +  R G+ P  YVE
Sbjct: 1  RARALYACKAEDESELSFEPGQIITNVQPSDEPGWLEGTLNGRTGLIPENYVE 53

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 44.9 bits (106), Expect = 4e-07
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYVE 72
            +  F + AQ   EL++ +G++VTLI +  +D  W+EG +  RRG+FP  +V+
Sbjct: 1  YCKVLFPYEAQNEDELTIKEGDIVTLISKDCIDAGWWEGELNGRRGVFPDNFVK 54

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 45.1 bits (107), Expect = 4e-07
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPVTYV 71
          +  A ++F  Q   +LS   G+ +T++ R D   +W+EGR+  R GIFP  YV
Sbjct: 1  EVTALYSFEGQQPCDLSFQAGDRITVLTRTDSQFDWWEGRLRGRVGIFPANYV 53

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212862 cd11929, SH3_SH3RF2_1, First Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 44.9 bits (106), Expect = 4e-07
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          +A+A  N+      +L   KG+++ L R++D NW+ G I    GIFP + VE
Sbjct: 2  RAKALCNYRGHNPGDLKFNKGDVILLRRQLDENWYLGEINGVSGIFPASSVE 53

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 44.4 bits (105), Expect = 5e-07
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVE 72
          R  F++      EL+L KG+++ +I +   D  W+EG +  RRG FP  +V 
Sbjct: 3  RVLFDYNPVAPDELALKKGDVIEVISKETEDEGWWEGELNGRRGFFPDNFVM 54

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 44.8 bits (106), Expect = 5e-07
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY 70
          A A ++F  +T  +LS  +G+ + +   +D  W  GR+  R GIFP  +
Sbjct: 2  AVALYDFTGETEEDLSFQRGDRILVTEHLDAEWSRGRLNGREGIFPRAF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212988 cd12055, SH3_CIN85_2, Second Src Homology 3 domain (SH3B) of Cbl-interacting protein of 85 kDa

 Score = 44.6 bits (105), Expect = 5e-07
 Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
             ++Y PQN+DELEL+ G+ + V+ + ++GW+ G    +G  G FP N+++
Sbjct: 4   VAFSYLPQNEDELELKVGDIIEVVGEVEEGWWEGV--LNGKTGMFPSNFIK 52

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CIN85. SH3B has been shown to bind Cbl proline-rich peptides and ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 44.4 bits (105), Expect = 5e-07
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
          Q RA ++F A    EL    G+++ ++   + +W++GR+  + G+FP  YV  
Sbjct: 1  QVRALYDFEALEDDELGFNSGDVIEVLDSSNPSWWKGRLHGKLGLFPANYVAP 53

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 44.3 bits (105), Expect = 6e-07
 Identities = 18/52 (34%), Positives = 33/52 (63%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          + +A +++ A    ELSL  G+++ +  + D+ W+ G +  ++GIFP TYVE
Sbjct: 1  RCKALYSYTANREDELSLQPGDIIEVHEKQDDGWWLGELNGKKGIFPATYVE 52

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 44.5 bits (105), Expect = 6e-07
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 100 HA--LYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           HA  L+++  ++ D+L L  GE V+++EK D  WY G  +     G FP N+V+
Sbjct: 1   HAVVLHDFPAEHSDDLSLNSGEIVYLLEKIDTEWYRGKCK--NTTGIFPANHVK 52

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 44.4 bits (105), Expect = 6e-07
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 7/57 (12%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEK-----CDDGWYVGSSQRSGCFGTFPGNYVER 152
           A+++Y+   +DEL LR G+ V V+ K      D+GW+ G  + +   G FP NYV  
Sbjct: 4   AVFDYEASAEDELTLRRGDRVEVLSKDSAVSGDEGWWTG--KINDRVGIFPSNYVTS 58

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 44.1 bits (104), Expect = 7e-07
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 27 NFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          +F A+   +LSL  GE+V L+ ++D  W+ G+     GIFP  +V+
Sbjct: 7  DFPAEHSDDLSLNSGEIVYLLEKIDTEWYRGKCKNTTGIFPANHVK 52

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 44.1 bits (104), Expect = 8e-07
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 4/52 (7%)

Query: 102 LYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVE 151
           L+ Y+ QN+DEL ++EG+ V ++ K   D GW+ G  + +G  G FP N+V+
Sbjct: 5   LFPYEAQNEDELTIKEGDIVTLISKDCIDAGWWEG--ELNGRRGVFPDNFVK 54

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 44.2 bits (104), Expect = 8e-07
 Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLI-RRVDNNWFEGRIGTRRGIFPVTYVEQ 73
          A+A+++F A+   ELSL +G+++ ++ ++    W+ G I  R G FP  YVE+
Sbjct: 2  AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRVGWFPANYVEE 54

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 43.8 bits (103), Expect = 9e-07
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A+Y+Y   N+DEL   +G+ + V+ K D  W+ G  + +G  G FP NYV+
Sbjct: 5   AMYDYTANNEDELSFSKGQLINVLNKDDPDWWQG--EINGVTGLFPSNYVK 53

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 17/53 (32%), Positives = 33/53 (62%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
          Q +A + + AQ   ELS  +G+++ +++   + W+ GR+  + G+FP  YVE+
Sbjct: 1  QCKALYAYDAQDTDELSFNEGDIIEILKEDPSGWWTGRLRGKEGLFPGNYVEK 53

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 15/51 (29%), Positives = 34/51 (66%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
             +F++ A+   EL+L  G+++T +++++  W+EG +  +RG+FP  +V+
Sbjct: 2  VIVEFDYDAEEPDELTLKVGDIITNVKKMEEGWWEGTLNGKRGMFPDNFVK 52

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212938 cd12005, SH3_Lck, Src homology 3 domain of Lck Protein Tyrosine Kinase

 Score = 43.7 bits (103), Expect = 1e-06
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           ALY+Y+P +D +L   +GE + ++E     W+   S  +G  G  P N+V
Sbjct: 4   ALYSYEPSHDGDLGFEKGEKLRILE-QSGEWWKAQSLTTGQEGFIPFNFV 52

Lck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lck is expressed in T-cells and natural killer cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212839 cd11906, SH3_BTK, Src Homology 3 domain of Bruton's tyrosine kinase

 Score = 43.7 bits (103), Expect = 1e-06
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           ALY+Y P N  +L+LR+GE   ++E+ +  W+  +  ++G  G  P NYV
Sbjct: 5   ALYDYTPMNAQDLQLRKGEEYVILEESNLPWW-RARDKNGREGYIPSNYV 53

BTK is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain with proline-rich and zinc-binding regions. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI---GTRRGIFPVTY 70
           RA ++  A    EL+  +GE++ +    D+ W+EG I    +RRG+FPV++
Sbjct: 2  VRALYDCQADNDDELTFSEGEIIVVTGEEDDEWWEGHIEGDPSRRGVFPVSF 53

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           AL+++ PQ D EL  R G+ + VM+  D  W+ G+    G  G FP NYV  
Sbjct: 4   ALFDFDPQEDGELGFRRGDFIEVMDNSDPNWWKGACH--GQTGMFPRNYVTP 53

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 98  PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           P  A +++K Q   EL L++G+ V++ ++ D  WY G  +  G  G FP +Y+E
Sbjct: 2   PARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEG--EHHGRVGIFPRSYIE 53

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           A +++ A    ELS  +G+++ + ++ D+ W+EG +    G+FP  YVE
Sbjct: 3  VALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVLNGVTGLFPGNYVE 52

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALYNY+ +   +L  ++G+ + + ++ D+ WY G     G  G FP +YV+
Sbjct: 4   ALYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGECN--GKQGFFPASYVQ 52

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 14/52 (26%), Positives = 30/52 (57%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          + +  F++  Q   EL L  G+ + ++  V+  W+EG++  + G+FP  +V+
Sbjct: 1  RCKVLFSYTPQNEDELELKVGDTIEVLGEVEEGWWEGKLNGKVGVFPSNFVK 52

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 43.5 bits (102), Expect = 2e-06
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           ALY+++   D+EL  + GE + V++  D  W+ G + R    G FP N+V
Sbjct: 6   ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRG--VGLFPSNFV 53

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212875 cd11942, SH3_JIP2, Src homology 3 domain of JNK-interacting protein 2

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNY 149
           + A++ + P+++DELEL   + + V  + DD WY G + R+G  G FP  Y
Sbjct: 2   HRAVFRFIPRHEDELELDVDDPLLVEAEEDDYWYRGYNMRTGERGIFPAFY 52

JNK-interacting protein 2 (JIP2) is also called Mitogen-activated protein kinase 8-interacting protein 2 (MAPK8IP2) or Islet-brain-2 (IB2). It is widely expressed in the brain, where it forms complexes with fibroblast growth factor homologous factors (FHFs), which facilitates activation of the p38delta MAPK. JIP2 is enriched in postsynaptic densities and may play a role in motor and cognitive function. In addition to a JNK binding domain, JIP2 also contains SH3 and Phosphotyrosine-binding (PTB) domains. The SH3 domain of the related protein JIP1 homodimerizes at the interface usually involved in proline-rich ligand recognition, despite the lack of this motif in the domain itself. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 7/57 (12%)

Query: 101 ALYNYKPQNDD-ELELREGETVFVMEKCD-----DGWYVGSSQRSGCFGTFPGNYVE 151
           ALY++ P+N + EL L++G+ V V+ K D       W+ G + R G  G FP NYVE
Sbjct: 4   ALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRT-RDGRIGWFPSNYVE 59

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 4/52 (7%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYV 150
           AL++Y+  N+DEL+ +EGE + ++ K   + GW+ G  + +G  G FP N+V
Sbjct: 6   ALFHYEGTNEDELDFKEGEIILIISKDTGEPGWWKG--ELNGKEGVFPDNFV 55

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
            L +   Q D+EL+LREG+ V +    D GW+ G     G  G FP  +V
Sbjct: 4   VLQDLSAQLDEELDLREGDVVTITGILDKGWFRGELN--GRRGIFPEGFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212834 cd11901, SH3_Nck1_2, Second Src Homology 3 domain of Nck1 adaptor protein

 Score = 42.7 bits (100), Expect = 3e-06
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
          A  KFN+ A+   ELSLVKG  V ++ +  + W+ G    + G FP  YV +
Sbjct: 4  AYVKFNYTAEREDELSLVKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTE 55

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 42.7 bits (100), Expect = 3e-06
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A +N+K  N+DEL + +G+ ++V    + GW+ G+   +G  G FP NYV 
Sbjct: 6   ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGT--LNGKTGWFPSNYVR 54

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212876 cd11943, SH3_JIP1, Src homology 3 domain of JNK-interacting protein 1

 Score = 42.7 bits (100), Expect = 3e-06
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNY 149
           + A++ + P++ DELEL   + + V  + +D WY   + R+G  G FP  Y
Sbjct: 2   HRAVFRFVPRHPDELELEVDDPLLVEVQAEDYWYEAYNMRTGARGIFPAYY 52

JNK-interacting protein 1 (JIP1) is also called Islet-brain 1 (IB1) or Mitogen-activated protein kinase 8-interacting protein 1 (MAPK8IP1). It is highly expressed in neurons, where it functions as an adaptor linking motor to cargo during axonal transport. It also affects microtubule dynamics in neurons. JIP1 is also found in pancreatic beta-cells, where it is involved in regulating insulin secretion. In addition to a JNK binding domain, JIP1 also contains SH3 and Phosphotyrosine-binding (PTB) domains. Its SH3 domain homodimerizes at the interface usually involved in proline-rich ligand recognition, despite the lack of this motif in the domain itself. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212984 cd12051, SH3_DOCK1_5_A, Src Homology 3 domain of Class A Dedicator of Cytokinesis proteins 1 and 5

 Score = 42.5 bits (100), Expect = 3e-06
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSS-QRSGCFGTFPGNYV 150
           A+YNY  +  DEL L+ G+TV ++E   +GWY G + ++    G FP +Y+
Sbjct: 4   AIYNYDARGPDELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYI 53

Dock1, also called Dock180, and Dock5 are class A DOCKs and are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. Dock1 interacts with the scaffold protein Elmo and the resulting complex functions upstream of Rac in many biological events including phagocytosis of apoptotic cells, cell migration and invasion. Dock5 functions upstream of Rac1 to regulate osteoclast function. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. Class A DOCKs also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus; they are specific GEFs for Rac. The SH3 domain of Dock1 binds to DHR-2 in an autoinhibitory manner; binding of Elmo to the SH3 domain of Dock1 exposes the DHR-2 domain and promotes GEF activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212880 cd11947, SH3_GRAP2_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 42.5 bits (100), Expect = 3e-06
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          +AR KF+F A    ELS  KG+++ ++   D+ WF+  +    G  P  +V+
Sbjct: 1  EARGKFDFTASGEDELSFKKGDVLKILSS-DDIWFKAELNGEEGYVPKNFVD 51

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also have roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212918 cd11985, SH3_Stac2_C, C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 2 (Stac2)

 Score = 42.6 bits (100), Expect = 3e-06
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           Y ALY + PQ +++L L+ G+ V V++  ++ W+ G S      G FP N+V+R
Sbjct: 2   YVALYKFLPQENNDLPLQPGDRVMVVDDSNEDWWKGKSGDR--VGFFPANFVQR 53

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac2 contains a single SH3 domain at the C-terminus unlike Stac1 and Stac3, which contain two C-terminal SH3 domains. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 42.4 bits (100), Expect = 4e-06
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 6/55 (10%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEK----CDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+Y+ Q+D+EL   EG  + ++ K     DDGW+ G  + +G  G FP   VE
Sbjct: 4   ALYDYEAQSDEELSFPEGAIIRILRKDDNGVDDGWWEG--EFNGRVGVFPSLVVE 56

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 41.9 bits (99), Expect = 4e-06
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
             ++Y  +  DEL L+ G+ +  ++K ++GW+ G    +G  G FP N+V+
Sbjct: 4   VEFDYDAEEPDELTLKVGDIITNVKKMEEGWWEG--TLNGKRGMFPDNFVK 52

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212930 cd11997, SH3_PACSIN3, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3)

 Score = 42.3 bits (99), Expect = 4e-06
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 97  VPYHALYNYKPQNDDELELREGETVFVMEKCDD-GWYVGSSQRSGCFGTFPGNYVE 151
           V   ALY+Y  Q  DEL  + GE +  + + D+ GW  G    SG  G +P NYVE
Sbjct: 2   VRVRALYDYTGQEADELSFKAGEELLKIGEEDEQGWCKGRLL-SGRIGLYPANYVE 56

PACSIN 3 or Syndapin III (Synaptic dynamin-associated protein III) is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212861 cd11928, SH3_SH3RF3_1, First Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 42.2 bits (99), Expect = 4e-06
 Identities = 14/50 (28%), Positives = 29/50 (58%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          +A +++  +   +L   KG+++ L R+VD NW+ G +    G  P +Y++
Sbjct: 4  KALYSYEGKEPGDLKFNKGDIIILRRKVDENWYHGELNGCHGFLPASYIQ 53

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 41.9 bits (99), Expect = 5e-06
 Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVE 72
          +A+A +++ A    E+S V+G+++T I ++D  W+ G     ++G+FP  YVE
Sbjct: 1  RAKALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVNAKGQKGLFPANYVE 53

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 41.9 bits (99), Expect = 5e-06
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWY---VGSSQRSGCFGTFPGNY 149
           ALY++ P++ ++L  + G+ ++V+ K   GW+   + SS      G FP NY
Sbjct: 4   ALYDFTPKSKNQLSFKAGDIIYVLNKDPSGWWDGVIISSSGKVKRGWFPSNY 55

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 41.7 bits (98), Expect = 5e-06
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          Q  A   + AQ   +L   +G+ + ++  V+  W EG    R GIFP  +V 
Sbjct: 1  QVVALHRYEAQGPEDLGFREGDTIDVLSEVNEAWLEGHSDGRVGIFPKCFVV 52

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212857 cd11924, SH3_Vinexin_2, Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 41.9 bits (98), Expect = 6e-06
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A Y +K   + EL  R+GE + ++ K ++ WY G    +G  G FP +YV+
Sbjct: 5   AQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQ 55

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212767 cd11833, SH3_Stac_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing (Stac) proteins

 Score = 41.7 bits (98), Expect = 6e-06
 Identities = 15/50 (30%), Positives = 30/50 (60%)

Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
          A + F  Q + +L +  G+ +TL+   + +W++G+I  R G FP  +V++
Sbjct: 4  ALYKFKPQENEDLEMRPGDKITLLDDSNEDWWKGKIEDRVGFFPANFVQR 53

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. This model represents the first C-terminal SH3 domain of Stac1 and Stac3, and the single C-terminal SH3 domain of Stac2. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 41.9 bits (98), Expect = 6e-06
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           Q  A +++ A    ELS  KG+L+ ++ + D +W++G I    G+FP  YV+
Sbjct: 1  CQVIAMYDYTANNEDELSFSKGQLINVLNKDDPDWWQGEINGVTGLFPSNYVK 53

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212741 cd11807, SH3_ASPP, Src homology 3 domain of Apoptosis Stimulating of p53 proteins (ASPP)

 Score = 42.0 bits (99), Expect = 6e-06
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 12/65 (18%)

Query: 97  VPYHALYNYKPQNDDELELREGETVFVMEKCDDG----WYVGSSQRSGCFGTFPGNYVER 152
              +AL++Y+ +N DEL  REG+ + V+ K DD     W+   + + G        YV R
Sbjct: 1   GVVYALFDYEAENGDELSFREGDELTVLRKGDDDETEWWWARLNDKEG--------YVPR 52

Query: 153 ASLAL 157
             L L
Sbjct: 53  NLLGL 57

The ASPP family of proteins bind to important regulators of apoptosis (p53, Bcl-2, and RelA) and cell growth (APCL, PP1). They share similarity at their C-termini, where they harbor a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain. Vertebrates contain three members of the family: ASPP1, ASPP2, and iASPP. ASPP1 and ASPP2 activate the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73), while iASPP is an oncoprotein that specifically inhibits p53-induced apoptosis. The expression of ASPP proteins is altered in tumors; ASPP1 and ASPP2 are downregulated whereas iASPP is upregulated is some cancer types. ASPP proteins also bind and regulate protein phosphatase 1 (PP1), and this binding is competitive with p53 binding. The SH3 domain and the ANK repeats of ASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212746 cd11812, SH3_AHI-1, Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

 Score = 41.7 bits (98), Expect = 6e-06
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           ALY+Y     DEL +  G+ + V+ K +D W+ GS   +G  G FP NYV
Sbjct: 4   ALYDYTANRSDELTIHRGDIIRVLYKDNDNWWFGSLV-NGQQGYFPANYV 52

AHI-1, also called Jouberin, is expressed in high levels in the brain, gonad tissues, and skeletal muscle. It is an adaptor protein that interacts with the small GTPase Rab8a and regulates it distribution and function, affecting cilium formation and vesicle transport. Mutations in the AHI-1 gene can cause Joubert syndrome, a disorder characterized by brainstem malformations, cerebellar aplasia/hypoplasia, and retinal dystrophy. AHI-1 variation is also associated with susceptibility to schizophrenia and type 2 diabetes mellitus progression. AHI-1 contains WD40 and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 41.6 bits (98), Expect = 7e-06
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGS-SQRSGCFGTFPGNYVE 151
           A YN+      EL  R+G+ + +  + D+ WY G    R    G FP +YV+
Sbjct: 4   AKYNFNADTGVELSFRKGDVITLTRRVDENWYEGRIGGRQ---GIFPVSYVQ 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212862 cd11929, SH3_SH3RF2_1, First Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 41.5 bits (97), Expect = 7e-06
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           AL NY+  N  +L+  +G+ + +  + D+ WY+G  + +G  G FP + VE
Sbjct: 5   ALCNYRGHNPGDLKFNKGDVILLRRQLDENWYLG--EINGVSGIFPASSVE 53

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212980 cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 domain of NADPH oxidase activator 1

 Score = 41.3 bits (97), Expect = 7e-06
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
          +  A+ ++ AQ   +L   +G+ + ++  V+  W EG    R GIFP  +  +
Sbjct: 1  RMVAQHDYSAQGPEDLEFSQGDTIDILSEVNQEWLEGHCDGRIGIFPKCFAVR 53

Noxa1 is a homolog of p67phox and is a cytosolic subunit of the nonphagocytic NADPH oxidase complex Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Noxa1 is co-expressed with Nox1 in colon, stomach, uterus, prostate, and vascular smooth muscle cells, consistent with its regulatory role. It does not interact with p40phox, unlike p67phox, making Nox1 activity independent of p40phox, unlike Nox2. Noxa1 contains TPR, PB1, and C-terminal SH3 domains, but lacks the central SH3 domain that is present in p67phox. The TPR domain binds activated GTP-bound Rac. The C-terminal SH3 domain binds the polyproline motif found at the C-terminus of Noxo1, a homolog of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212942 cd12009, SH3_Blk, Src homology 3 domain of Blk Protein Tyrosine Kinase

 Score = 41.3 bits (97), Expect = 7e-06
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDG-WYVGSSQRSGCFGTFPGNYVER 152
             A Y++ P N+ +L+L++GE + V+    DG W++  S  +G  G  P NYV R
Sbjct: 2   VIAQYDFVPSNERDLQLKKGEKLQVL--KSDGEWWLAKSLTTGKEGYIPSNYVAR 54

Blk is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. It is expressed specifically in B-cells and is involved in pre-BCR (B-cell receptor) signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212812 cd11879, SH3_Bem1p_2, Second Src Homology 3 domain of Bud emergence protein 1 and similar domains

 Score = 41.5 bits (98), Expect = 7e-06
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 102 LYNYKPQNDDELELREGETVFVMEKCDDGWYVGSS-QRSGCFGTFPGNYVE 151
           LY++K +  DEL+ + G+ + +    +  W+V     R G  G  P ++VE
Sbjct: 5   LYDFKAERPDELDAKAGDAIIICAHSNYEWFVAKPIGRLGGPGLIPVSFVE 55

Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 41.4 bits (97), Expect = 8e-06
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 103 YNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           ++YK Q++DEL +  G+ +  ++K D GW+ G  +  G  G FP N+V
Sbjct: 6   FDYKAQHEDELTITVGDIITKIKKDDGGWWEG--EIKGRRGLFPDNFV 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 41.4 bits (97), Expect = 8e-06
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           AL+ Y+ Q  ++L  REG+T+ V+ + ++ W  G S   G  G FP  +V 
Sbjct: 4   ALHRYEAQGPEDLGFREGDTIDVLSEVNEAWLEGHSD--GRVGIFPKCFVV 52

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212955 cd12022, SH3_p47phox_2, Second or C-terminal Src homology 3 domain of the p47phox subunit of NADPH oxidase, also called Neutrophil Cytosolic Factor 1

 Score = 41.4 bits (97), Expect = 9e-06
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 98  PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
            Y  +  Y    +DEL L EGE + V+ K  DGW+V   ++    G FP  Y+++
Sbjct: 1   LYITIKAYTAVEEDELTLLEGEAIEVIHKLLDGWWV--VRKGEVTGYFPSMYLQK 53

p47phox, or NCF1, is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), a polybasic/autoinhibitory region, and a C-terminal proline-rich region (PRR). This model characterizes the second SH3 domain (or C-SH3) of p47phox. In its inactive state, the tandem SH3 domains interact intramolecularly with the autoinhibitory region; upon activation, the tandem SH3 domains are exposed through a conformational change, resulting in their binding to the PRR of p22phox and the activation of NADPH oxidase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212888 cd11955, SH3_srGAP1-3, Src homology 3 domain of Slit-Robo GTPase Activating Proteins 1, 2, and 3

 Score = 41.5 bits (97), Expect = 9e-06
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
          +A AKF++V ++  ELS  KG  + L  R  ++W+EGR     G+ P  Y+
Sbjct: 1  EAIAKFDYVGRSARELSFKKGASLLLYHRASDDWWEGRHNGIDGLVPHQYI 51

srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of central nervous system tissues. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212871 cd11938, SH3_ARHGEF16_26, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF16 and ARHGEF26

 Score = 41.4 bits (97), Expect = 9e-06
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 105 YKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFP 146
           Y  +  DEL L++ + V V++   DGWY G   R G  G FP
Sbjct: 8   YTAKQPDELSLQQADVVLVLQTESDGWYYGERLRDGERGWFP 49

ARHGEF16, also called ephexin-4, acts as a GEF for RhoG, activating it by exchanging bound GDP for free GTP. RhoG is a small GTPase that is a crucial regulator of Rac in migrating cells. ARHGEF16 interacts directly with the ephrin receptor EphA2 and mediates cell migration and invasion in breast cancer cells by activating RhoG. ARHGEF26, also called SGEF (SH3 domain-containing guanine exchange factor), also activates RhoG. It is highly expressed in liver and may play a role in regulating membrane dynamics. ARHGEF16 and ARHGEF26 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212835 cd11902, SH3_Nck2_2, Second Src Homology 3 domain of Nck2 adaptor protein

 Score = 41.1 bits (96), Expect = 1e-05
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ 74
          A  KF +VA+   ELSLVKG  VT++ +  + W+ G    + G FP  YV ++
Sbjct: 3  AFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVVEE 55

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 18/53 (33%), Positives = 27/53 (50%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ 74
          A A +++  +   E+S    E +T I  VD  W++G     RG+FP  YVE  
Sbjct: 3  AVALYDYQGEGDDEISFDPQETITDIEMVDEGWWKGTCHGHRGLFPANYVELL 55

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIR-RVDNNWFEGR-IGTRRGIFPVTYVE 72
          + RA ++F +Q   ELSL  GE++T+ R  V + W EGR      G+FP +YVE
Sbjct: 1  KVRALYDFDSQPSGELSLRAGEVLTITRQDVGDGWLEGRNSRGEVGLFPSSYVE 54

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212712 cd11778, SH3_Bzz1_2, Second Src Homology 3 domain of Bzz1 and similar domains

 Score = 40.9 bits (96), Expect = 1e-05
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 5/51 (9%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDD--GWYVGSSQRSGCFGTFPGNY 149
           ALY+Y+ Q DDE+ +R G+ + V+ + DD  GW  G  + +G  G FP +Y
Sbjct: 4   ALYDYEAQGDDEISIRVGDRIAVI-RGDDGSGWTYG--EINGVKGLFPTSY 51

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the second C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 105 YKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGC---FGTFPGNYVE 151
           +    +++L L  G+ V V +K   GW+ G  Q  G     G FP NYV+
Sbjct: 8   FTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYVK 57

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212856 cd11923, SH3_Sorbs2_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A YN+    + EL LR+G+ V ++++ D  WY G    +   G FP +YVE
Sbjct: 5   AKYNFNADTNVELSLRKGDRVVLLKQVDQNWYEGKIPGTNRQGIFPVSYVE 55

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212752 cd11818, SH3_Eve1_5, Fifth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNY 149
           ALY++  +N+DEL  + G+ +  +E  D+ W  G  +  G  G FP N+
Sbjct: 4   ALYDFTGENEDELSFKAGDIITELESIDEEWMSG--ELRGKSGIFPKNF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 15/52 (28%), Positives = 32/52 (61%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          Q    +++ AQ   EL+  KG+++ ++ + D +W++G +  + G+FP  YV+
Sbjct: 2  QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGELNGQVGLFPSNYVK 53

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVG----SSQRSGCFGTFPGNY 149
           ALY+ +  NDDEL   EGE + V  + DD W+ G       R    G FP ++
Sbjct: 4   ALYDCQADNDDELTFSEGEIIVVTGEEDDEWWEGHIEGDPSRR---GVFPVSF 53

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           +A F+F  Q   EL   +G+ + ++   D NW++G    + G+FP  YV 
Sbjct: 2  VQALFDFDPQEDGELGFRRGDFIEVMDNSDPNWWKGACHGQTGMFPRNYVT 52

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212861 cd11928, SH3_SH3RF3_1, First Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+Y+ +   +L+  +G+ + +  K D+ WY G  + +GC G  P +Y++
Sbjct: 5   ALYSYEGKEPGDLKFNKGDIIILRRKVDENWYHG--ELNGCHGFLPASYIQ 53

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212692 cd11758, SH3_CRK_N, N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR--IGTRRGIFPVTYVEQ 73
          RA F+F      +L   KGE++T+IR+ +  W+  R   G + G+ PV YVE+
Sbjct: 4  RALFDFPGNDDEDLPFKKGEILTVIRKPEEQWWNARNSEG-KTGMIPVPYVEK 55

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The N-terminal SH3 domain of CRK binds a number of target proteins including DOCK180, C3G, SOS, and cABL. The CRK family includes two alternatively spliced protein forms, CRKI and CRKII, that are expressed by the CRK gene, and the CRK-like (CRKL) protein, which is expressed by a distinct gene (CRKL). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212736 cd11802, SH3_Endophilin_B, Src homology 3 domain of Endophilin-B

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIR--RVDNNWFEGRIGTRRGIFPVTY 70
          +AR  +++ A+   ELSL+  E++T+     +D ++  G  G++RG  PV Y
Sbjct: 1  KARVLYDYDAEDSTELSLLADEVITVYELPGMDEDYMMGERGSQRGKVPVAY 52

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212759 cd11825, SH3_PLCgamma, Src homology 3 domain of Phospholipase C (PLC) gamma

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGS-SQRSGCFGTFPGNYVE 151
           ALY+Y+ Q  DEL   +   +  +EK D GW+ G    +   +  FP NYVE
Sbjct: 4   ALYDYRAQRPDELSFCKHAIITNVEKEDGGWWRGDYGGKKQKW--FPANYVE 53

PLC catalyzes the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG) in response to various receptors. Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma catalyzes this reaction in tyrosine kinase-dependent signaling pathways. It is activated and recruited to its substrate at the membrane. Vertebrates contain two forms of PLCgamma, PLCgamma1, which is widely expressed, and PLCgamma2, which is primarily found in haematopoietic cells. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212759 cd11825, SH3_PLCgamma, Src homology 3 domain of Phospholipase C (PLC) gamma

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR-GIFPVTYVEQ 73
           +A +++ AQ   ELS  K  ++T + + D  W+ G  G ++   FP  YVE+
Sbjct: 2  VKALYDYRAQRPDELSFCKHAIITNVEKEDGGWWRGDYGGKKQKWFPANYVEE 54

PLC catalyzes the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG) in response to various receptors. Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma catalyzes this reaction in tyrosine kinase-dependent signaling pathways. It is activated and recruited to its substrate at the membrane. Vertebrates contain two forms of PLCgamma, PLCgamma1, which is widely expressed, and PLCgamma2, which is primarily found in haematopoietic cells. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212932 cd11999, SH3_PACSIN_like, Src homology 3 domain of an unknown subfamily of proteins with similarity to Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDD-GWYVGSSQRSGCFGTFPGNYVE 151
           A+Y+Y  Q  DEL  + GE +  +E  D+ GW  G +   G  G +P NYVE
Sbjct: 6   AVYDYTGQEPDELSFKAGEELLKVEDEDEQGWCKGVTD-GGAVGLYPANYVE 56

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212822 cd11889, SH3_Cyk3p-like, Src Homology 3 domain of Cytokinesis protein 3 and similar proteins

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           A+Y++  + + +L   EG+ + V+   D  W+ G  +R+G  G FP N+V
Sbjct: 4   AVYSWAGETEGDLGFLEGDLIEVLSIGDGSWWSGKLRRNGAEGIFPSNFV 53

Cytokinesis protein 3 (Cyk3 or Cyk3p) is a component of the actomyosin ring independent cytokinesis pathway in yeast. It interacts with Inn1 and facilitates its recruitment to the bud neck, thereby promoting cytokinesis. Cyk3p contains an N-terminal SH3 domain and a C-terminal transglutaminase-like domain. The Cyk3p SH3 domain binds to the C-terminal proline-rich region of Inn1. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 53

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNY 149
           Y ALY+Y+ + DD+L  ++G+ + +++  D  W++     +G  G  P NY
Sbjct: 2   YVALYDYEARTDDDLSFKKGDRLQILDDSDGDWWLARHLSTGKEGYIPSNY 52

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212873 cd11940, SH3_ARHGEF5_19, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF5 and ARHGEF19

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query: 105 YKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           YK Q +DEL L + + + V ++  DGW  G     G  G FP ++VE
Sbjct: 8   YKAQENDELTLEKADIIMVRQQSSDGWLEGVRLSDGERGWFPQSHVE 54

ARHGEF5, also called ephexin-3 or TIM (Transforming immortalized mammary oncogene), is a potent activator of RhoA and it plays roles in regulating cell shape, adhesion, and migration. It binds to the SH3 domain of Src and is involved in regulating Src-induced podosome formation. ARHGEF19, also called ephexin-2 or WGEF (weak-similarity GEF), is highly expressed in the intestine, liver, heart and kidney. It activates RhoA, Cdc42, and Rac 1, and has been shown to activate RhoA in the Wnt-PCP (planar cell polarity) pathway. It is involved in the regulation of cell polarity and cytoskeletal reorganization. ARHGEF5 and ARHGEF19 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|213015 cd12139, SH3_Bin1, Src Homology 3 domain of Bridging integrator 1 (Bin1), also called Amphiphysin-2

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 13/65 (20%)

Query: 101 ALYNYKPQNDDELELREGETVFVM-----EKCDDGWYVG--------SSQRSGCFGTFPG 147
           A ++Y   + DEL+L+ G+ V V+     E+ D+GW +G          +   C G FP 
Sbjct: 7   AQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPE 66

Query: 148 NYVER 152
           N+ ER
Sbjct: 67  NFTER 71

Bin1 isoforms are localized in many different tissues and may function in intracellular vesicle trafficking. It plays a role in the organization and maintenance of the T-tubule network in skeletal muscle. Mutations in Bin1 are associated with autosomal recessive centronuclear myopathy. Bin1 contains an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR) and a C-terminal SH3 domain. The SH3 domain of Bin1 forms transient complexes with actin, myosin filaments, and CDK5, to facilitate sarcomere organization and myofiber maturation. It also binds dynamin and prevents its self-assembly. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 72

>gnl|CDD|212830 cd11897, SH3_SNX18, Src Homology 3 domain of Sorting nexin 18

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 98  PYHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE 151
              ALY+++ +N  E+ LRE E + +  + D +GW  G + R G  G FP +YVE
Sbjct: 1   RARALYDFRSENPGEISLREHEVLSLCSEQDIEGWLEGVNSR-GDRGLFPASYVE 54

SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. It binds FIP5 and is required for apical lumen formation. It may also play a role in axonal elongation. SNXs are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNX18 also contains BAR and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 11/60 (18%)

Query: 22 ARAKFNFVAQT-HLELSLVKGELVTLIRRVD-----NNWFEGRIGTRR---GIFPVTYVE 72
           RA ++F  +   +ELSL KG++V ++ + D     + W++GR  TR    G FP  YVE
Sbjct: 2  CRALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWWKGR--TRDGRIGWFPSNYVE 59

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212710 cd11776, SH3_PI3K_p85, Src Homology 3 domain of the p85 regulatory subunit of Class IA Phosphatidylinositol 3-kinases

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 15/70 (21%)

Query: 97  VPYHALYNYKPQNDDELELREGETVFV-------------MEKCDD--GWYVGSSQRSGC 141
           V Y ALY+Y+ + D+++ L+ G+ + V              E      GW  G ++R+G 
Sbjct: 1   VQYRALYDYEKERDEDIILKTGDVLVVENPELLALGVPDGKETVPKPEGWLEGKNERTGE 60

Query: 142 FGTFPGNYVE 151
            G FPG YVE
Sbjct: 61  RGDFPGTYVE 70

Class I PI3Ks convert PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. They are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. Class IA PI3Ks associate with the p85 regulatory subunit family, which contains SH3, RhoGAP, and SH2 domains. The p85 subunits recruit the PI3K p110 catalytic subunit to the membrane, where p110 phosphorylates inositol lipids. Vertebrates harbor two p85 isoforms, called alpha and beta. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 72

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 39.8 bits (93), Expect = 3e-05
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          Q  A F++ A    +L   KG+++ ++ +V+ +W EG+   + GIFP  +VE
Sbjct: 1  QVVALFSYEASQPEDLEFQKGDVILVLSKVNEDWLEGQCKGKIGIFPSAFVE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212788 cd11854, SH3_Fus1p, Src homology 3 domain of yeast cell fusion protein Fus1p

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGW 131
              +  ++P  DDEL ++ GETV V+ + DDGW
Sbjct: 2   MTVISTFEPSLDDELLIKVGETVRVLAEYDDGW 34

Fus1p is required at the cell surface for cell fusion during the mating response in yeast. It requires Bch1p and Bud7p, which are Chs5p-Arf1p binding proteins, for localization to the plasma membrane. It acts as a scaffold protein to assemble a cell surface complex which is involved in septum degradation and inhibition of the NOG pathway to promote cell fusion. The SH3 domain of Fus1p interacts with Bin1p, a formin that controls the assembly of actin cables in response to Cdc42 signaling. It has been shown to bind the motif, R(S/T)(S/T)SL, instead of PxxP motifs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212820 cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 and similar domains

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSG---CFGTFPGNYVER 152
           ALY Y+  ++D+L    G+ + V E+ D  WY G    S      G FP N+VE 
Sbjct: 6   ALYPYESDHEDDLNFDVGQLITVTEEEDADWYFGEYVDSNGNTKEGIFPKNFVEV 60

This subfamily is composed of Saccharomyces cerevisiae Bbc1p, also called Mti1p (Myosin tail region-interacting protein), and similar proteins. Bbc1p interacts with and regulates type I myosins in yeast, Myo3p and Myo5p, which are involved in actin cytoskeletal reorganization. It also binds and inhibits Las17, a WASp family protein that functions as an activator of the Arp2/3 complex. Bbc1p contains an N-terminal SH3 domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 60

>gnl|CDD|212889 cd11956, SH3_srGAP4, Src homology 3 domain of Slit-Robo GTPase Activating Protein 4

 Score = 39.8 bits (93), Expect = 3e-05
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
          E +A A F++  +T  ELS  +G+++ L  +  ++W+ G     RG+ P  Y+
Sbjct: 1  EVEAVACFDYTGRTAQELSFKRGDVLLLHSKASSDWWRGEHNGMRGLIPHKYI 53

srGAP4, also called ARHGAP4, is highly expressed in hematopoietic cells and may play a role in lymphocyte differentiation. It is able to stimulate the GTPase activity of Rac1, Cdc42, and RhoA. In the nervous system, srGAP4 has been detected in differentiating neurites and may be involved in axon and dendritic growth. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 39.6 bits (92), Expect = 4e-05
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          A +++      ELS ++G ++ +I++ D+ W+EG      G+FP  YVE
Sbjct: 4  AIYDYSKDKDDELSFMEGAIIYVIKKNDDGWYEGVCNGVTGLFPGNYVE 52

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEG-RIGT-RRGIFPVTYVE 72
          Q +    + AQ   EL+L +G++V ++R++ + W+EG R+    RG FP +Y E
Sbjct: 1  QVQCVHAYTAQQPDELTLEEGDVVNVLRKMPDGWYEGERLRDGERGWFPSSYTE 54

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 39.7 bits (92), Expect = 4e-05
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           A +N++  N+DEL   +G+ + V    + GW+ G+   +G  G FP NYV
Sbjct: 4   AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNYV 51

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212726 cd11792, SH3_Fut8, Src homology 3 domain of Alpha1,6-fucosyltransferase (Fut8)

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFP 146
           A+Y +KP+N DE+ELR G+ + V     DG+  G ++R+G  G +P
Sbjct: 4   AIYPHKPRNHDEIELRVGDIIGVAGNHWDGYSKGRNRRTGKTGLYP 49

Fut8 catalyzes the alpha1,6-linkage of a fucose residue from a donor substrate to N-linked oligosaccharides on glycoproteins in a process called core fucosylation, which is crucial for growth factor receptor-mediated biological functions. Fut8-deficient mice show severe growth retardation, early death, and a pulmonary emphysema-like phenotype. Fut8 is also implicated to play roles in aging and cancer metastasis. It contains an N-terminal coiled-coil domain, a catalytic domain, and a C-terminal SH3 domain. The SH3 domain of Fut8 is located in the lumen and its role in glycosyl transfer is unclear. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212709 cd11775, SH3_Sla1p_3, Third Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVM--EKCDDGWYVGSSQRSGCFGTFPGNYVER 152
            LY++  Q+DDEL ++EG+ V+++  +K  D W V  +  +G  G  P +Y+E 
Sbjct: 5   VLYDFDAQSDDELTVKEGDVVYILDDKKSKDWWMV-ENVSTGKEGVVPASYIEI 57

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. The third SH3 domain of Sla1p can bind ubiquitin while retaining the ability to bind proline-rich ligands; monoubiquitination of target proteins signals internalization and sorting through the endocytic pathway. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212703 cd11769, SH3_CSK, Src Homology 3 domain of C-terminal Src kinase

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEGRIGT-RRGIFPVTYVEQ 73
          AK+NF   +  +L   KG+++T++    D NW++ +    R G+ P  YV++
Sbjct: 6  AKYNFNGASEEDLPFKKGDILTIVAVTKDPNWYKAKNKDGREGMIPANYVQK 57

CSK is a cytoplasmic (or nonreceptor) tyr kinase containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, CSK is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. CSK catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. It is expressed in a wide variety of tissues and plays a role, as a regulator of Src, in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, CSK also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212829 cd11896, SH3_SNX33, Src Homology 3 domain of Sorting Nexin 33

 Score = 39.6 bits (92), Expect = 4e-05
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+++ +N +E+ ++E E + +  E   DGW  G + R G  G FP +YVE
Sbjct: 4   ALYSFQSENKEEINIQENEELVIFSENSLDGWLQGQNSR-GETGLFPASYVE 54

SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). SNXs are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNX33 also contains BAR and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 39.2 bits (92), Expect = 5e-05
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 101 ALYNYKPQNDDELELREGETVF-VMEKCDDGWYVG--SSQRSGCFGTFPGNYVE 151
           ALY  K +++ EL    G+ +  V    + GW  G  + +     G  P NYVE
Sbjct: 4   ALYACKAEDESELSFEPGQIITNVQPSDEPGWLEGTLNGRT----GLIPENYVE 53

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 39.0 bits (91), Expect = 5e-05
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+++   DDEL    G+ + V++  +  W+ G  +  G  G FP NYV 
Sbjct: 4   ALYDFEALEDDELGFNSGDVIEVLDSSNPSWWKG--RLHGKLGLFPANYVA 52

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212931 cd11998, SH3_PACSIN1-2, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) and PACSIN 2

 Score = 39.2 bits (91), Expect = 5e-05
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 97  VPYHALYNYKPQNDDELELREGETVFVMEKCDD-GWYVGSSQRSGCFGTFPGNYVE 151
           V   ALY+Y  Q  DEL  + G+ +  +E  D+ GW  G    SG  G +P NYVE
Sbjct: 1   VRVRALYDYDGQEQDELSFKAGDELTKLEDEDEQGWCKGRLD-SGQVGLYPANYVE 55

PACSIN 1 or Syndapin I (Synaptic dynamin-associated protein I) is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropathology of Huntington's disease. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212878 cd11945, SH3_Endophilin_B1, Src homology 3 domain of Endophilin-B1

 Score = 39.6 bits (92), Expect = 5e-05
 Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTL--IRRVDNNWFEGRIGTRRGIFPVTYVE 72
          +AR  +++ A    ELSL+  E++T+  +  +D++W  G  G ++G  P+TY+E
Sbjct: 5  KARVLYDYDAANSTELSLLADEVITVYSVPGMDSDWLMGERGNQKGKVPITYLE 58

Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth factor (NGF) trafficking, neurite outgrowth, mitochondrial outer membrane dynamics, and cell death. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. Endophilin-B1 forms homo- and heterodimers (with endophilin-B2) through its BAR domain. It interacts with amphiphysin 1 and dynamin 1 through its SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212792 cd11858, SH3_Myosin-I_fungi, Src homology 3 domain of Type I fungal Myosins

 Score = 39.3 bits (92), Expect = 5e-05
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           Y ALY++     +EL L++ + V++++K D+GW++         G  P  Y+E 
Sbjct: 2   YKALYDFAGSVANELSLKKDDIVYIVQKEDNGWWLAKKLDESKEGWVPAAYLEE 55

Type I myosins (myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Saccharomyces cerevisiae has two myosins-I, Myo3 and Myo5, which are involved in endocytosis and the polarization of the actin cytoskeleton. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212713 cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain of Insulin Receptor tyrosine kinase Substrate p53, Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2 (BAIAP2)-Like proteins, and similar proteins

 Score = 39.2 bits (92), Expect = 5e-05
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 101 ALYNYKPQNDDELELREGETV-FVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY +    + +L   EG+ +  +  +  DGW+ G ++RSG  G FP  Y E
Sbjct: 5   ALYPHAAGGETQLSFEEGDVITLLGPEPRDGWHYGENERSGRRGWFPIAYTE 56

Proteins in this family include IRSp53, BAIAP2L1, BAIAP2L2, and similar proteins. They all contain an Inverse-Bin/Amphiphysin/Rvs (I-BAR) or IMD domain in addition to the SH3 domain. IRSp53, also known as BAIAP2, is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. BAIAP2L1, also called IRTKS (Insulin Receptor Tyrosine Kinase Substrate), serves as a substrate for the insulin receptor and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. IRSp53 and IRTKS also mediate the recruitment of effector proteins Tir and EspFu, which regulate host cell actin reorganization, to bacterial attachment sites. BAIAP2L2 co-localizes with clathrin plaques but its function has not been determined. The SH3 domains of IRSp53 and IRTKS have been shown to bind the proline-rich C-terminus of EspFu. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212854 cd11921, SH3_Vinexin_1, First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 39.1 bits (91), Expect = 6e-05
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 103 YNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ++++ Q+  EL L++G+ V++ ++ D  W  G  +  G  G FP NYVE
Sbjct: 7   FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG--EHHGRVGIFPANYVE 53

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212809 cd11876, SH3_MLK, Src Homology 3 domain of Mixed Lineage Kinases

 Score = 39.0 bits (91), Expect = 6e-05
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 24 AKFNFVAQTHLELSLVKGELVTLIRR-----VDNNWFEGRIGTRRGIFPVTYV 71
          A F++ A+   EL+L +G+ V ++ +      D  W+ G+IG + GIFP  YV
Sbjct: 4  ALFDYDARGEDELTLRRGQPVEVLSKDAAVSGDEGWWTGKIGDKVGIFPSNYV 56

MLKs are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Mammals have four MLKs (MLK1-4), mostly conserved in vertebrates, which contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212860 cd11927, SH3_SH3RF1_1, First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 39.2 bits (91), Expect = 6e-05
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALYNY+ +   +L+  +G+ + +  + D+ WY G  + +G  G FP N+V+
Sbjct: 5   ALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHG--EVNGIHGFFPTNFVQ 53

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212981 cd12048, SH3_DOCK3_B, Src Homology 3 domain of Class B Dedicator of Cytokinesis 3

 Score = 39.1 bits (91), Expect = 6e-05
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 113 LELREGETVFVMEKCDDGWYVG-SSQRSGCFGTFPGNYV 150
           L L  GETV ++EKC +GWY G S ++    G FP NY+
Sbjct: 16  LVLELGETVQILEKC-EGWYRGVSIKKPNVKGIFPANYI 53

Dock3, also called modifier of cell adhesion (MOCA), and presenilin binding protein (PBP), is a class B DOCK and is an atypical guanine nucleotide exchange factor (GEF) that lacks the conventional Dbl homology (DH) domain. It regulates N-cadherin dependent cell-cell adhesion, cell polarity, and neuronal morphology. It promotes axonal growth by stimulating actin polymerization and microtubule assembly. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. Class B DOCKs also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus; Dock3 is a specific GEFs for Rac. The SH3 domain of Dock3 binds to DHR-2 in an autoinhibitory manner; binding of the scaffold protein Elmo to the SH3 domain of Dock3 exposes the DHR-2 domain and promotes GEF activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212819 cd11886, SH3_BOI, Src Homology 3 domain of fungal BOI-like proteins

 Score = 39.2 bits (92), Expect = 6e-05
 Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCD---DGWYVGSSQRSGCFGTFPGNY 149
              ++++  +++DEL L+ G+ + ++E  +   DGWY+G + R+G  G FP  +
Sbjct: 2   LIVIHDFNARSEDELTLKPGDKIELIEDDEEFGDGWYLGRNLRTGETGLFPVVF 55

This subfamily includes the Saccharomyces cerevisiae proteins BOI1 and BOI2, and similar proteins. They contain an N-terminal SH3 domain, a Sterile alpha motif (SAM), and a Pleckstrin homology (PH) domain at the C-terminus. BOI1 and BOI2 interact with the SH3 domain of Bem1p, a protein involved in bud formation. They promote polarized cell growth and participates in the NoCut signaling pathway, which is involved in the control of cytokinesis. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 38.6 bits (90), Expect = 7e-05
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           AL++Y+    ++LE ++G+ + V+ K ++ W  G  +  G  G FP  +VE
Sbjct: 4   ALFSYEASQPEDLEFQKGDVILVLSKVNEDWLEGQCK--GKIGIFPSAFVE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C) of Intersectin

 Score = 38.9 bits (91), Expect = 7e-05
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 35 ELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
          +L+   G+++ + ++ D  W+ G IG R GIFP  YV
Sbjct: 15 DLTFNAGDVILVTKK-DGEWWTGTIGDRTGIFPSNYV 50

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. The SH3C of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212903 cd11970, SH3_PLCgamma1, Src homology 3 domain of Phospholipase C (PLC) gamma 1

 Score = 39.2 bits (91), Expect = 7e-05
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 9/55 (16%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGT----FPGNYVE 151
           AL++YK Q +DEL   +   +  +EK + GW+     R    G     FP NYVE
Sbjct: 8   ALFDYKAQREDELTFTKNAIIQNVEKQEGGWW-----RGDYGGKKQLWFPSNYVE 57

PLCgamma1 is widely expressed and is essential in growth and development. It is activated by the TrkA receptor tyrosine kinase and functions as a key regulator of cell differentiation. It is also the predominant PLCgamma in T cells and is required for T cell and NK cell function. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212948 cd12015, SH3_Tks_1, First Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 38.9 bits (91), Expect = 7e-05
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           Y  + +YK Q  +E+ LR G+ V V+EK ++GW+  S       G  P  Y+E 
Sbjct: 2   YVVVADYKKQQPNEISLRAGDVVDVIEKNENGWWFVSL--EDEQGWVPATYLEP 53

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the first SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212843 cd11910, SH3_PI3K_p85alpha, Src Homology 3 domain of the p85alpha regulatory subunit of Class IA Phosphatidylinositol 3-kinases

 Score = 39.5 bits (92), Expect = 7e-05
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 15/68 (22%)

Query: 99  YHALYNYKPQNDDELELREGETVFV-------------MEKCDD--GWYVGSSQRSGCFG 143
           Y ALY+YK + +++++L  G+ + V              E   +  GW  G ++ +G  G
Sbjct: 4   YRALYDYKKEREEDIDLHLGDILTVNKGSLLALGFSEGQEARPEEIGWLNGYNETTGERG 63

Query: 144 TFPGNYVE 151
            FPG YVE
Sbjct: 64  DFPGTYVE 71

Class I PI3Ks convert PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. They are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. Class IA PI3Ks associate with the p85 regulatory subunit family, which contains SH3, RhoGAP, and SH2 domains. The p85 subunits recruit the PI3K p110 catalytic subunit to the membrane, where p110 phosphorylates inositol lipids. Vertebrates harbor two p85 isoforms, called alpha and beta. In addition to regulating the p110 subunit, p85alpha interacts with activated FGFR3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 75

>gnl|CDD|212838 cd11905, SH3_Tec, Src Homology 3 domain of Tec (Tyrosine kinase expressed in hepatocellular carcinoma)

 Score = 38.6 bits (90), Expect = 7e-05
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           A+Y+++P    +L L  GE   ++EK D  W+  +  + G  G  P NYV
Sbjct: 5   AMYDFQPTEPHDLRLETGEEYVILEKNDVHWW-KARDKYGKEGYIPSNYV 53

Tec is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. It is more widely-expressed than other Tec subfamily kinases. Tec is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Tec is a key component of T-cell receptor (TCR) signaling, and is important in TCR-stimulated proliferation, IL-2 production and phospholipase C-gamma1 activation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212879 cd11946, SH3_GRB2_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 38.9 bits (90), Expect = 7e-05
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A Y++K   DDEL  + G+ + V+ E+CD  WY   ++ +G  G  P NY+E
Sbjct: 5   AKYDFKATADDELSFKRGDILKVLNEECDQNWY--KAELNGKDGFIPKNYIE 54

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. Its N-terminal SH3 domain binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 38.6 bits (90), Expect = 8e-05
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
           + RA ++F A    EL+   GE++T++   D NW++G      G+FP  +V
Sbjct: 1  RKVRALYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGSNHRGEGLFPANFV 52

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212988 cd12055, SH3_CIN85_2, Second Src Homology 3 domain (SH3B) of Cbl-interacting protein of 85 kDa

 Score = 38.4 bits (89), Expect = 8e-05
 Identities = 13/53 (24%), Positives = 32/53 (60%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
          + +  F+++ Q   EL L  G+++ ++  V+  W+EG +  + G+FP  ++++
Sbjct: 1  RCQVAFSYLPQNEDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKE 53

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CIN85. SH3B has been shown to bind Cbl proline-rich peptides and ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212804 cd11871, SH3_p67phox_N, N-terminal (or first) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 38.7 bits (90), Expect = 8e-05
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 98  PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           P+  LY + P+  +EL++  G  VFV++K  D W   +   +G  G  P N++E
Sbjct: 1   PHRVLYEFVPETKEELQVLPGNIVFVLKKGTDNW--ATVVFNGKKGLVPCNFLE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. The N-terminal SH3 domain increases the affinity of p67phox for the oxidase complex. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 38.4 bits (89), Expect = 9e-05
 Identities = 15/53 (28%), Positives = 29/53 (54%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
          Q +  F +V Q   EL L  G+++ +   V+  W+ G +  + G+FP  +V++
Sbjct: 2  QCKVLFEYVPQNEDELELKVGDIIDINEEVEEGWWSGTLNGKSGLFPSNFVKE 54

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 15/51 (29%), Positives = 30/51 (58%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
              +++ AQ   ELS+ KG++V +I + ++ W+      ++G+ P TY+E
Sbjct: 2  YSVLYDYTAQEDDELSISKGDVVAVIEKGEDGWWTVERNGQKGLVPGTYLE 52

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          A +++      ELS  +G ++ +I++ D+ W+EG +    G+FP  YVE
Sbjct: 7  AIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVE 55

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 37.8 bits (89), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 98  PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
               +++Y   + +EL L++G+ V V++K D+GW+ G  +R G  G  P +YVE
Sbjct: 1   YGRVIFDYVATDPNELSLKKGDVVKVLDKDDNGWWEG--ERGGRRGLVPSSYVE 52

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           A Y++  ++  +L  R G+ + V++  D  W+ G    SG  G FP NYV
Sbjct: 4   AQYDFSAEDPSQLSFRRGDIIEVLDCPDPNWWRGRI--SGRVGFFPRNYV 51

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 28 FVAQTHLELSLVKGELVTLIRRVDNNWFEGRI---GTRR--GIFPVTYVE 72
          F A    +LSL  G+LV + ++  + W+EG +   G +R  G FP  YV+
Sbjct: 8  FTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYVK 57

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212881 cd11948, SH3_GRAP_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDD-GWYVGSSQRSGCFGTFPGNYVE 151
           ALY+++    DEL  ++G+ + ++   DD  WY   ++  G  G  P NY++
Sbjct: 4   ALYSFQATESDELPFQKGDILKILNMEDDQNWY--KAELQGREGYIPKNYIK 53

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212877 cd11944, SH3_Endophilin_B2, Src homology 3 domain of Endophilin-B2

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTL--IRRVDNNWFEGRIGTRRGIFPVTYVE 72
          +AR  +++ A    EL+L+  EL+T+  +  +D +W  G  G ++G  PVTY+E
Sbjct: 1  KARVLYDYEAADSSELALLADELITVYSLPGMDPDWLIGERGNQKGKVPVTYLE 54

Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified as a cancer antigen with potential utility in immunotherapy. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. Endophilin-B2 forms homo- and heterodimers (with endophilin-B1) through its BAR domain. The related protein endophilin-B1 interacts with amphiphysin 1 and dynamin 1 through its SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212738 cd11804, SH3_GRB2_like_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIR-RVDNNWFEGRIGTRRGIFPVTYV 71
          +A AK +F A    ELS  KG ++ ++    D NW++  +  + G+ P  Y+
Sbjct: 1  EAVAKHDFKATAEDELSFKKGSILKVLNMEDDPNWYKAELDGKEGLIPKNYI 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The N-terminal SH3 domain of GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212763 cd11829, SH3_GAS7, Src homology 3 domain of Growth Arrest Specific protein 7

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 23 RAKFNFVAQTHLE-LSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
          R  + F  + H + LS   GEL+ +++  D  W+EG     RG FP +YV
Sbjct: 3  RTLYAFTGEQHQQGLSFEAGELIRVLQAPDGGWWEGEKDGLRGWFPASYV 52

GAS7 is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 16/46 (34%), Positives = 29/46 (63%)

Query: 27 NFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          ++ AQ   E+SL +GE+V ++ + D+ W+  R G + G  P +Y+E
Sbjct: 7  DYEAQGDDEISLQEGEVVEVLEKNDSGWWYVRKGDKEGWVPASYLE 52

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212879 cd11946, SH3_GRB2_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIR-RVDNNWFEGRIGTRRGIFPVTYVEQQ 74
          +A AK++F A    ELS  +G+++ ++    D NW++  +  + G  P  Y+E +
Sbjct: 2  EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 56

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. Its N-terminal SH3 domain binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|213007 cd12074, SH3_Tks5_1, First Src homology 3 domain of Tyrosine kinase substrate with five SH3 domains

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           Y  + NY+ Q + E+ L+ GE V V+EK + GW+  S+      G  P  Y+E
Sbjct: 2   YVVVSNYEKQENSEISLQAGEVVDVIEKNESGWWFVSTAEEQ--GWVPATYLE 52

Tks5, also called SH3 and PX domain-containing protein 2A (SH3PXD2A) or Five SH (FISH), is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. It binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. Tks5 contains an N-terminal Phox homology (PX) domain and five SH3 domains. This model characterizes the first SH3 domain of Tks5. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212939 cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn and Yrk Protein Tyrosine Kinases

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           + ALY+Y+ + +D+L   +GE   ++   +  W+   S  +G  G  P NYV
Sbjct: 3   FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54

Fyn and Yrk (Yes-related kinase) are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           ALY ++ + ++ L   +G+ + V+E+ +  W+ G  +  G  G FP +YV
Sbjct: 4   ALYPWRAKKENHLSFAKGDIITVLEQQEMWWF-GELEG-GEEGWFPKSYV 51

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212704 cd11770, SH3_Nephrocystin, Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           Y AL +++ + + +L  ++GE + ++ K  DGW++ +    G  G  P  Y++
Sbjct: 2   YEALSDFQAEQEGDLSFKKGEVLRIISKRADGWWL-AENSKGNRGLVPKTYLK 53

Nephrocystin contains an SH3 domain involved in signaling pathways that regulate cell adhesion and cytoskeletal organization. It is a protein that in humans is associated with juvenile nephronophthisis, an inherited kidney disease characterized by renal fibrosis that lead to chronic renal failure in children. It is localized in cell-cell junctions in renal duct cells, and is known to interact with Ack1, an activated Cdc42-associated kinase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212811 cd11878, SH3_Bem1p_1, First Src Homology 3 domain of Bud emergence protein 1 and similar domains

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNN-WFEGR--IGTRRGIFPVTY 70
          RA +++ AQT  ELS  KG+   +I   D   W+E    +  +RG+ P +Y
Sbjct: 3  RALYDYRAQTPGELSFSKGDFFHVIGEEDQGEWYEATNPVTGKRGLVPKSY 53

Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212840 cd11907, SH3_TXK, Src Homology 3 domain of TXK, also called Resting lymphocyte kinase (Rlk)

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           ALY++ P+    L L+  E   ++E+ D  W+  +  R G  G  P NYV
Sbjct: 5   ALYDFLPREPSNLALKRAEEYLILEQYDPHWW-KARDRYGNEGLIPSNYV 53

TXK is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal cysteine-rich region. Rlk is expressed in T-cells and mast cell lines, and is a key component of T-cell receptor (TCR) signaling. It is important in TCR-stimulated proliferation, IL-2 production and phospholipase C-gamma1 activation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212895 cd11962, SH3_Abp1_fungi_C1, First C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 7/42 (16%)

Query: 35 ELSLVKGELVTLIRRVDNNWFEGRIGT----RRGIFPVTYVE 72
          E+ LV+GE+VT I  VD +W+   +GT      G+FP  YVE
Sbjct: 15 EIELVEGEIVTNIEMVDEDWW---MGTNSKGESGLFPSNYVE 53

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 23 RAKFNFVAQTHLELSLVKGE--LVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          RA + F A+   E+S   G+   V   +  +  W  G +  + G FP  YVE
Sbjct: 3  RALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELKGKTGWFPANYVE 54

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 37.3 bits (86), Expect = 3e-04
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVE 151
           A YN+  ++  EL LREG+ V +  +   D GW+ G +  +G  G FP  YVE
Sbjct: 5   ARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGET--NGRIGWFPSTYVE 55

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 37.2 bits (86), Expect = 3e-04
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A Y++  ++  EL L+EG+ + ++ +K   GW+ G  +  G  G FP NYVE
Sbjct: 4   ARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRG--EIYGRVGWFPANYVE 53

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212957 cd12024, SH3_NoxO1_2, Second or C-terminal Src homology 3 domain of NADPH oxidase (Nox) Organizing protein 1

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWY 132
           Y+A   Y+ Q +DEL +  G  V V++K D+GW+
Sbjct: 2   YYATRAYEAQKEDELSVPAGVVVEVLQKSDNGWW 35

Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1 is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. NoxO1 contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), and a C-terminal proline-rich region (PRR). This model characterizes the second SH3 domain (or C-SH3) of NoxO1. The tandem SH3 domains of NoxO1 interact with the PRR of p22phox, which also complexes with Nox1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212941 cd12008, SH3_Src, Src homology 3 domain of Src Protein Tyrosine Kinase

 Score = 37.4 bits (86), Expect = 3e-04
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           ALY+Y+ + + +L  ++GE + ++   +  W++  S  +G  G  P NYV
Sbjct: 4   ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 53

Src (or c-Src) is a cytoplasmic (or non-receptor) PTK and is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212781 cd11847, SH3_Brk, Src homology 3 domain of Brk (Breast tumor kinase) Protein Tyrosine Kinase (PTK), also called PTK6

 Score = 37.2 bits (86), Expect = 3e-04
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCF---GTFPGNYVER 152
           Y AL+++K + D+EL  + G+   + E+  D W      R+G     G  P NY+ R
Sbjct: 2   YKALWDFKARGDEELSFQAGDQFRIAERSGDWWTALKLDRAGGVVAQGFVPNNYLAR 58

Brk is a cytoplasmic (or non-receptor) PTK with limited homology to Src kinases. It has been found to be overexpressed in a majority of breast tumors. It plays roles in normal cell differentiation, proliferation, survival, migration, and cell cycle progression. Brk substrates include RNA-binding proteins (SLM-1/2, Sam68), transcription factors (STAT3/5), and signaling molecules (Akt, paxillin, IRS-4). Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation site. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212701 cd11767, SH3_Nck_3, Third Src Homology 3 domain of Nck adaptor proteins

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVER 152
           ALY +  +ND+EL   +GE + ++EK   D  W+   +   G  G  P NYVE 
Sbjct: 4   ALYPFTGENDEELSFEKGERLEIIEKPEDDPDWWKARNAL-GTTGLVPRNYVEV 56

This group contains the third SH3 domain of Nck, the first SH3 domain of Caenorhabditis elegans Ced-2 (Cell death abnormality protein 2), and similar domains. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. Ced-2 is a cell corpse engulfment protein that interacts with Ced-5 in a pathway that regulates the activation of Ced-10, a Rac small GTPase. Length = 56

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVE 151
           A Y++  ++  EL L+EG+ V +  K    GW+ G  + +G  G FP  YVE
Sbjct: 4   ARYDFCARDMRELSLKEGDVVKIYNKKGQQGWWRG--EINGRIGWFPSTYVE 53

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212918 cd11985, SH3_Stac2_C, C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 2 (Stac2)

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 15/50 (30%), Positives = 30/50 (60%)

Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
          A + F+ Q + +L L  G+ V ++   + +W++G+ G R G FP  +V++
Sbjct: 4  ALYKFLPQENNDLPLQPGDRVMVVDDSNEDWWKGKSGDRVGFFPANFVQR 53

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac2 contains a single SH3 domain at the C-terminus unlike Stac1 and Stac3, which contain two C-terminal SH3 domains. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212804 cd11871, SH3_p67phox_N, N-terminal (or first) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 13/50 (26%), Positives = 28/50 (56%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          R  + FV +T  EL ++ G +V ++++  +NW       ++G+ P  ++E
Sbjct: 3  RVLYEFVPETKEELQVLPGNIVFVLKKGTDNWATVVFNGKKGLVPCNFLE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. The N-terminal SH3 domain increases the affinity of p67phox for the oxidase complex. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212925 cd11992, SH3_Intersectin2_3, Third Src homology 3 domain (or SH3C) of Intersectin-2

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 35 ELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          +L+  +GE + L+ + D  W+ G I  R GIFP  YV 
Sbjct: 15 DLTFNEGEEI-LVTQKDGEWWTGSIEDRTGIFPSNYVR 51

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (SH3C) of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212844 cd11911, SH3_CIP4-like, Src Homology 3 domain of Cdc42-Interacting Protein 4

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD-DGW 131
           ALY++   ++  L + EGE + V+E+   DGW
Sbjct: 4   ALYDFDGTSEGTLSMEEGEILLVLEEDGGDGW 35

This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. It functions downstream of Cdc42 in PDGF-dependent actin reorganization and cell migration, and also regulates the activity of PDGFRbeta. It uses Src as a substrate in regulating the invasiveness of breast tumor cells. CIP4 may also play a role in the pathogenesis of Huntington's disease. Members of this subfamily typically contain an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. The SH3 domain of CIP4 associates with Gapex-5, a Rab31 GEF. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           A+Y+++   D+EL  + G+ + +++  D  W+ G + +    G FP N+V
Sbjct: 5   AIYDFEAAEDNELTFKAGDIITILDDSDPNWWKGETPQG--TGLFPSNFV 52

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212735 cd11801, SH3_JIP1_like, Src homology 3 domain of JNK-interacting proteins 1 and 2, and similar domains

 Score = 36.5 bits (85), Expect = 5e-04
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEG---RIGTRRGIFPVTYV 71
           RA   F+ +   E+ L  G+ V + +  D+ W EG   R G +RGIFP  YV
Sbjct: 2  HRALHKFIPRHEDEIELDIGDPVYVEQEADDLWCEGTNLRTG-QRGIFPAAYV 53

JNK-interacting proteins (JIPs) function as scaffolding proteins for c-Jun N-terminal kinase (JNK) signaling pathways. They bind to components of Mitogen-activated protein kinase (MAPK) pathways such as JNK, MKK, and several MAP3Ks such as MLK and DLK. There are four JIPs (JIP1-4); all contain a JNK binding domain. JIP1 and JIP2 also contain SH3 and Phosphotyrosine-binding (PTB) domains. Both are highly expressed in the brain and pancreatic beta-cells. JIP1 functions as an adaptor linking motor to cargo during axonal transport and also is involved in regulating insulin secretion. JIP2 form complexes with fibroblast growth factor homologous factors (FHFs), which facilitates activation of the p38delta MAPK. The SH3 domain of JIP1 homodimerizes at the interface usually involved in proline-rich ligand recognition, despite the lack of this motif in the domain itself. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212830 cd11897, SH3_SNX18, Src Homology 3 domain of Sorting nexin 18

 Score = 36.5 bits (84), Expect = 5e-04
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIGTR--RGIFPVTYVE 72
          +ARA ++F ++   E+SL + E+++L    D   W EG + +R  RG+FP +YVE
Sbjct: 1  RARALYDFRSENPGEISLREHEVLSLCSEQDIEGWLEG-VNSRGDRGLFPASYVE 54

SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. It binds FIP5 and is required for apical lumen formation. It may also play a role in axonal elongation. SNXs are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNX18 also contains BAR and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212744 cd11810, SH3_RUSC1_like, Src homology 3 domain of RUN and SH3 domain-containing proteins 1 and 2

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 17/48 (35%), Positives = 30/48 (62%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY 70
          RA  + VA    +LS  KG+++ +I RVD++W     G+ +G+ P++Y
Sbjct: 3  RALCHHVATDSGQLSFRKGDILRVIARVDDDWLLCTRGSTKGLVPLSY 50

RUSC1 and RUSC2, that were originally characterized in silico. They are adaptor proteins consisting of RUN, leucine zipper, and SH3 domains. RUSC1, also called NESCA (New molecule containing SH3 at the carboxy-terminus), is highly expressed in the brain and is translocated to the nuclear membrane from the cytoplasm upon stimulation with neurotrophin. It plays a role in facilitating neurotrophin-dependent neurite outgrowth. It also interacts with NEMO (or IKKgamma) and may function in NEMO-mediated activation of NF-kB. RUSC2, also called Iporin, is expressed ubiquitously with highest amounts in the brain and testis. It interacts with the small GTPase Rab1 and the Golgi matrix protein GM130, and may function in linking GTPases to certain intracellular signaling pathways. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212734 cd11800, SH3_DNMBP_C2_like, Second C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba, and similar domains

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 8/60 (13%)

Query: 98  PYHALYNYKPQNDDELELREGETVFVMEKCD-----DGWYVGSSQRSGCFGTFPGNYVER 152
            Y+ALY ++ ++  EL + EG+ V V+EK D     + W V   +  G  G  P NY+ +
Sbjct: 1   YYYALYTFEARSPGELSVTEGQVVTVLEKHDLKGNPEWWLV---EDRGKQGYVPSNYLAK 57

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. The C-terminal SH3 domains of DNMBP bind to N-WASP and Ena/VASP proteins, which are key regulatory proteins of the actin cytoskeleton. Also included in this subfamily is the second C-terminal SH3 domain of Rho guanine nucleotide exchange factor 37 (ARHGEF37), whose function is still unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212949 cd12016, SH3_Tks_2, Second Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           Y     YK +N+DE+    G  V V++K  DGW+    Q  G  G  P  Y+++
Sbjct: 3   YITTQAYKAENEDEIGFETGVVVEVIQKNLDGWWKIRYQ--GKEGWAPATYLKK 54

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the second SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212991 cd12058, SH3_MLK4, Src Homology 3 domain of Mixed Lineage Kinase 4

 Score = 36.5 bits (84), Expect = 6e-04
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 24 AKFNFVAQTHLELSLVKGELVTLIRR-----VDNNWFEGRIGTRRGIFPVTYV 71
          A +++ A    ELSL +G++V ++ +      D+ W+ G+I  R GIFP  YV
Sbjct: 4  ALYDYEASGEDELSLRRGDVVEVLSQDAAVSGDDGWWAGKIRHRLGIFPANYV 56

MLK4 is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. The specific function of MLK4 is yet to be determined. Mutations in the kinase domain of MLK4 have been detected in colorectal cancers. MLK4 contains an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 36.3 bits (84), Expect = 6e-04
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRV-----DNNWFEGRIGTRRGIFPVTYV 71
          A F++ A    EL+L +G+ V ++ +      D  W+ G+I  R GIFP  YV
Sbjct: 4  AVFDYEASAEDELTLRRGDRVEVLSKDSAVSGDEGWWTGKINDRVGIFPSNYV 56

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212708 cd11774, SH3_Sla1p_2, Second Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 36.3 bits (84), Expect = 6e-04
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGW-YVGSSQRSGCFGTFPGNYV 150
           ALY+Y  Q ++EL   EG+T+ V +  D  W  VG +     FG  P NY+
Sbjct: 4   ALYDYDKQTEEELSFNEGDTLDVYDDSDSDWILVGFNGTQ--FGFVPANYI 52

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212940 cd12007, SH3_Yes, Src homology 3 domain of Yes Protein Tyrosine Kinase

 Score = 36.2 bits (83), Expect = 6e-04
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
           ALY+Y+ +  ++L  ++GE   ++   +  W+   S  +G  G  P NYV  A
Sbjct: 5   ALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYVAPA 57

Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212828 cd11895, SH3_FCHSD1_2, Second Src Homology 3 domain of FCH and double SH3 domains protein 1

 Score = 36.1 bits (83), Expect = 7e-04
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRR----VDNNWFEGRIGTRRGIFPVTYVEQ 73
          ARA +++  Q+  ELS  +G L+ L+ R    VD+ ++ G  G R G+FP   VE+
Sbjct: 2  ARALYSYTGQSPEELSFPEGALIRLLPRAQDGVDDGFWRGEFGGRVGVFPSLLVEE 57

FCHSD1 has a domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. It has only been characterized in silico and its function is unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212902 cd11969, SH3_PLCgamma2, Src homology 3 domain of Phospholipase C (PLC) gamma 2

 Score = 36.0 bits (83), Expect = 7e-04
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 11/56 (19%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGT-----FPGNYVE 151
           ALY+Y+ +  DEL   +G  +  + K   GW+ G       +G      FP NYVE
Sbjct: 4   ALYDYRAKRSDELSFCKGALIHNVSKETGGWWKGD------YGGKVQHYFPSNYVE 53

PLCgamma2 is primarily expressed in haematopoietic cells, specifically in B cells. It is activated by tyrosine phosphorylation by B cell receptor (BCR) kinases and is recruited to the plasma membrane where its substrate is located. It is required in pre-BCR signaling and in the maturation of B cells. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212827 cd11894, SH3_FCHSD2_2, Second Src Homology 3 domain of FCH and double SH3 domains protein 2

 Score = 36.1 bits (83), Expect = 7e-04
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEK---CDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+Y+ Q DDEL   EG  + ++ K    DDG++ G  + +G  G FP   VE
Sbjct: 4   ALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEG--EFNGRIGVFPSVLVE 55

FCHSD2 has a domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. It has only been characterized in silico and its function is unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 35.9 bits (83), Expect = 8e-04
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD--DGWYVGSSQRSGCFGTFPGNYVE 151
           ALY++  +   +L  ++G+ + +++K D  + W+ G     G  G FP NYVE
Sbjct: 4   ALYDFAGEQPGDLAFQKGDIITILKKSDSQNDWWTGRI--GGREGIFPANYVE 54

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212842 cd11909, SH3_PI3K_p85beta, Src Homology 3 domain of the p85beta regulatory subunit of Class IA Phosphatidylinositol 3-kinases

 Score = 36.3 bits (84), Expect = 8e-04
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 15/68 (22%)

Query: 99  YHALYNYKPQNDDELELREGETVFVM-------------EKCDD--GWYVGSSQRSGCFG 143
           Y ALY Y+ + +++++L  G+ + V              E+C    GW +G ++R+   G
Sbjct: 3   YRALYPYRKEREEDIDLLPGDVLTVSRAALQALGVKEGGEQCPQSIGWILGLNERTKQRG 62

Query: 144 TFPGNYVE 151
            FPG YVE
Sbjct: 63  DFPGTYVE 70

Class I PI3Ks convert PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. They are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. Class IA PI3Ks associate with the p85 regulatory subunit family, which contains SH3, RhoGAP, and SH2 domains. The p85 subunits recruit the PI3K p110 catalytic subunit to the membrane, where p110 phosphorylates inositol lipids. Vertebrates harbor two p85 isoforms, called alpha and beta. In addition to regulating the p110 subunit, p85beta binds CD28 and may be involved in the activation and differentiation of antigen-stimulated T cells. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 74

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 35.8 bits (83), Expect = 8e-04
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
          A A ++ V     EL    G+++ ++   D +W+ G I    G FP ++V
Sbjct: 2  AEALWDHVTMDPEELGFKAGDVIEVLDMSDKDWWWGSIRDEEGWFPASFV 51

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212728 cd11794, SH3_DNMBP_N1, First N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 36.0 bits (83), Expect = 8e-04
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           A++++ P   +EL L  G+ + V++  D+ W +G+  + G  G FP ++V
Sbjct: 4   AIFDFCPSVSEELPLFAGDVIEVLKVVDEFWLLGT--KEGVTGQFPSSFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212777 cd11843, SH3_PACSIN, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 35.9 bits (83), Expect = 9e-04
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 23 RAKFNFVAQTHLELSLVKGELVT-LIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          RA +++  Q   ELS   G+++T L    +  W +GR+  R G++P  YVE
Sbjct: 3  RALYDYEGQESDELSFKAGDILTKLEEEDEQGWCKGRLDGRVGLYPANYVE 53

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212891 cd11958, SH3_RUSC1, Src homology 3 domain of RUN and SH3 domain-containing protein 1

 Score = 35.6 bits (82), Expect = 9e-04
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 35 ELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY 70
          +LS  KGE + ++  VD +W   R G R G+ PV Y
Sbjct: 14 QLSFRKGEELQVLGTVDEDWIRCRRGDREGLVPVGY 49

RUSC1, also called NESCA (New molecule containing SH3 at the carboxy-terminus), is highly expressed in the brain and is translocated to the nuclear membrane from the cytoplasm upon stimulation with neurotrophin. It plays a role in facilitating neurotrophin-dependent neurite outgrowth. It also interacts with NEMO (or IKKgamma) and may function in NEMO-mediated activation of NF-kB. RUSC proteins are adaptor proteins consisting of RUN, leucine zipper, and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212714 cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 35.4 bits (82), Expect = 0.001
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 8/55 (14%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR-----GIFPVTYVE 72
          RA +++  Q   EL L +G++V ++ + D+ WF   +GT       G FP  YV 
Sbjct: 3  RALYSYTPQNEDELELREGDIVYVMEKCDDGWF---VGTSERTGLFGTFPGNYVA 54

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the third SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212717 cd11783, SH3_SH3RF_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEG---RIGTRRGIFPVTYV 71
          A + +  Q   EL L KGE+ T+  +  + WF+G   R G + G+FP  YV
Sbjct: 4  ALYPYKPQKPDELELRKGEMYTVTEKCQDGWFKGTSLRTG-QSGVFPGNYV 53

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVE 72
          ARA +++ A    E+S   G+++T I ++D  W+ G       G+FP  YVE
Sbjct: 2  ARALYDYQAADDTEISFDPGDIITDIEQIDEGWWRGTGPDGTYGLFPANYVE 53

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          A A +++ A    E+S    +++T I  +D  W+ G    + G+FP  YVE
Sbjct: 2  AVALYDYQAADDDEISFDPDDIITNIEMIDEGWWRGVCRGKYGLFPANYVE 52

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212873 cd11940, SH3_ARHGEF5_19, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF5 and ARHGEF19

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 28 FVAQTHLELSLVKGELVTLIRRVDNNWFEG-RIGTR-RGIFPVTYVE 72
          + AQ + EL+L K +++ + ++  + W EG R+    RG FP ++VE
Sbjct: 8  YKAQENDELTLEKADIIMVRQQSSDGWLEGVRLSDGERGWFPQSHVE 54

ARHGEF5, also called ephexin-3 or TIM (Transforming immortalized mammary oncogene), is a potent activator of RhoA and it plays roles in regulating cell shape, adhesion, and migration. It binds to the SH3 domain of Src and is involved in regulating Src-induced podosome formation. ARHGEF19, also called ephexin-2 or WGEF (weak-similarity GEF), is highly expressed in the intestine, liver, heart and kidney. It activates RhoA, Cdc42, and Rac 1, and has been shown to activate RhoA in the Wnt-PCP (planar cell polarity) pathway. It is involved in the regulation of cell polarity and cytoskeletal reorganization. ARHGEF5 and ARHGEF19 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212792 cd11858, SH3_Myosin-I_fungi, Src homology 3 domain of Type I fungal Myosins

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVE 72
            +A ++F      ELSL K ++V ++++ DN W+  +    ++ G  P  Y+E
Sbjct: 1  TYKALYDFAGSVANELSLKKDDIVYIVQKEDNGWWLAKKLDESKEGWVPAAYLE 54

Type I myosins (myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Saccharomyces cerevisiae has two myosins-I, Myo3 and Myo5, which are involved in endocytosis and the polarization of the actin cytoskeleton. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212903 cd11970, SH3_PLCgamma1, Src homology 3 domain of Phospholipase C (PLC) gamma 1

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGI-FPVTYVEQ 73
          +A F++ AQ   EL+  K  ++  + + +  W+ G  G ++ + FP  YVE+
Sbjct: 7  KALFDYKAQREDELTFTKNAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEE 58

PLCgamma1 is widely expressed and is essential in growth and development. It is activated by the TrkA receptor tyrosine kinase and functions as a key regulator of cell differentiation. It is also the predominant PLCgamma in T cells and is required for T cell and NK cell function. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 16/51 (31%), Positives = 29/51 (56%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
          + RA ++F A    EL+   G+++T++   D NW++G      G+FP  +V
Sbjct: 2  KVRAIYDFEAAEDNELTFKAGDIITILDDSDPNWWKGETPQGTGLFPSNFV 52

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212899 cd11966, SH3_ASAP2, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing protein 2

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG---TRRGIFPVTYV 71
          + +A +N VA    EL+  +GE++ +    D  W+ G I    TRRG FPV++V
Sbjct: 1  RVKALYNCVADNPDELTFSEGEIIIVDGEEDKEWWIGHIDGEPTRRGAFPVSFV 54

ASAP2 is also called DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. It mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and it binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212702 cd11768, SH3_Tec_like, Src Homology 3 domain of Tec-like Protein Tyrosine Kinases

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+++P    +L L +GE   V++  ++ W+  +  ++G  G  P NYV 
Sbjct: 4   ALYDFQPIEPGDLPLEKGEEYVVLDDSNEHWWR-ARDKNGNEGYIPSNYVT 53

The Tec (Tyrosine kinase expressed in hepatocellular carcinoma) subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. They are cytoplasmic (or nonreceptor) tyr kinases containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212693 cd11759, SH3_CRK_C, C-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 36 LSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          L+L  G+LV + +   +  +EG +  + G FP T+VE
Sbjct: 20 LALEVGDLVKVTKINVSGQWEGELNGKVGHFPFTHVE 56

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The C-terminal SH3 domain of CRK has not been shown to bind any target protein; it acts as a negative regulator of CRK function by stabilizing a structure that inhibits the access by target proteins to the N-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212817 cd11884, SH3_MYO15, Src Homology 3 domain of Myosin XV

 Score = 35.4 bits (82), Expect = 0.001
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRR---VDNNWFEGRIGTRRGIFPVTYVE 72
            A   ++ +    LS  KG+++ L+ +   +D  W  G +  R G FP  YV+
Sbjct: 2  VVAVRAYITRDQTLLSFHKGDVIKLLPKEGPLDPGWLFGTLDGRSGAFPKEYVQ 55

This subfamily is composed of proteins with similarity to Myosin XVa. Myosin XVa is an unconventional myosin that is critical for the normal growth of mechanosensory stereocilia of inner ear hair cells. Mutations in the myosin XVa gene are associated with nonsyndromic hearing loss. Myosin XVa contains a unique N-terminal extension followed by a motor domain, light chain-binding IQ motifs, and a tail consisting of a pair of MyTH4-FERM tandems separated by a SH3 domain, and a PDZ domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|212945 cd12012, SH3_RIM-BP_2, Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 11/60 (18%)

Query: 101 ALYNYKPQ----NDD----ELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE 151
           AL++Y P     N D    EL  +EG+ + V    D DG+Y+G  + +G  G  P N V 
Sbjct: 4   ALFDYDPLTMSPNPDAAEEELPFKEGQLIKVYGDKDADGFYLG--EINGRRGLVPCNMVS 61

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212872 cd11939, SH3_ephexin1, Src homology 3 domain of the Rho guanine nucleotide exchange factor, ephexin-1 (also called NGEF or ARHGEF27)

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 102 LYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ++ Y  Q  DEL L   + + +++K DDGW  G        G FP + VE
Sbjct: 5   VHPYVSQEPDELSLELADVLNILDKTDDGWIFGERLHDQERGWFPSSVVE 54

Ephexin-1, also called NGEF (neuronal GEF) or ARHGEF27, activates RhoA, Tac1, and Cdc42 by exchanging bound GDP for free GTP. It is expressed mainly in the brain in a region associated with movement control. It regulates the stability of postsynaptic acetylcholine receptor (AChR) clusters and thus, plays a critical role in the maturation and neurotransmission of neuromuscular junctions. Ephexin-1 directly interacts with the ephrin receptor EphA4 and their coexpression enhances the ability of ephexin-1 to activate RhoA. It is required for normal axon growth and EphA-induced growth cone collapse. Ephexin-1 contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212723 cd11789, SH3_Nebulin_family_C, C-terminal Src Homology 3 domain of the Nebulin family of proteins

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEG---RIGTRRGIFPVTYVEQ 73
          RA +++ A    E+S  +G+++  +  +D+ W EG   R G + G+ P  YVE 
Sbjct: 3  RAMYDYAAADDDEVSFQEGDVIINVEIIDDGWMEGTVQRTG-QSGMLPANYVEL 55

Nebulin family proteins contain multiple nebulin repeats, and may contain an N-terminal LIM domain and/or a C-terminal SH3 domain. They have molecular weights ranging from 34 to 900 kD, depending on the number of nebulin repeats, and they all bind actin. They are involved in the regulation of actin filament architecture and function as stabilizers and scaffolds for cytoskeletal structures with which they associate, such as long actin filaments or focal adhesions. Nebulin family proteins that contain a C-terminal SH3 domain include the giant filamentous protein nebulin, nebulette, Lasp1, and Lasp2. Lasp2, also called LIM-nebulette, is an alternatively spliced variant of nebulette. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 35.1 bits (81), Expect = 0.002
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           A ++++ + +DEL   EG+ + + E   + W  G  + +G  G FP N+V
Sbjct: 4   ARFDFEGEQEDELSFSEGDVITLKEYVGEEWAKG--ELNGKIGIFPLNFV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
          + RA ++F A    EL+   GE++ ++   D NW++G      G+FP  +V
Sbjct: 3  KVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGVGLFPSNFV 53

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212692 cd11758, SH3_CRK_N, N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRS-GCFGTFPGNYVER 152
           AL+++   +D++L  ++GE + V+ K ++ W+  +++ S G  G  P  YVE+
Sbjct: 5   ALFDFPGNDDEDLPFKKGEILTVIRKPEEQWW--NARNSEGKTGMIPVPYVEK 55

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The N-terminal SH3 domain of CRK binds a number of target proteins including DOCK180, C3G, SOS, and cABL. The CRK family includes two alternatively spliced protein forms, CRKI and CRKII, that are expressed by the CRK gene, and the CRK-like (CRKL) protein, which is expressed by a distinct gene (CRKL). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212925 cd11992, SH3_Intersectin2_3, Third Src homology 3 domain (or SH3C) of Intersectin-2

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGS-SQRSGCFGTFPGNYVE 151
           Y ALY Y      +L   EGE + V +K D  W+ GS   R+   G FP NYV 
Sbjct: 2   YIALYPYSSSEPGDLTFNEGEEILVTQK-DGEWWTGSIEDRT---GIFPSNYVR 51

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (SH3C) of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212728 cd11794, SH3_DNMBP_N1, First N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
           RA F+F      EL L  G+++ +++ VD  W  G      G FP ++V
Sbjct: 2  VRAIFDFCPSVSEELPLFAGDVIEVLKVVDEFWLLGTKEGVTGQFPSSFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212890 cd11957, SH3_RUSC2, Src homology 3 domain of RUN and SH3 domain-containing protein 2

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 35 ELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
          +LS  KG+++ ++ R D +W    +G   G+ P+ YV
Sbjct: 15 QLSFNKGDILQVLSRADGDWLRCSLGPDSGLVPIAYV 51

RUSC2, also called Iporin or Interacting protein of Rab1, is expressed ubiquitously with highest amounts in the brain and testis. It interacts with the small GTPase Rab1 and the Golgi matrix protein GM130, and may function in linking GTPases to certain intracellular signaling pathways. RUSC proteins are adaptor proteins consisting of RUN, leucine zipper, and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212947 cd12014, SH3_RIM-BP_1, First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 9/62 (14%)

Query: 99  YHALYNYKPQ----NDD---ELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYV 150
           + A Y+Y P     N++   EL L  G+ V+V    D DG+Y G     G  G  P N+V
Sbjct: 2   FVARYSYNPLRDSPNENPEAELPLNAGDYVYVYGDMDEDGFYEGELL-DGRRGLVPSNFV 60

Query: 151 ER 152
           ER
Sbjct: 61  ER 62

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212983 cd12050, SH3_DOCK2_A, Src Homology 3 domain of Class A Dedicator of Cytokinesis protein 2

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRS-GCFGTFPGNYV 150
           A+YN+K     +L L+ G+ V + E C+D WY G   R     G FP +++
Sbjct: 4   AIYNFKGSGVPQLSLQIGDVVHIQETCED-WYKGYLVRHKDLQGIFPKSFI 53

Dock2 is a hematopoietic cell-specific, class A DOCK and is an atypical guanine nucleotide exchange factor (GEF) that lacks the conventional Dbl homology (DH) domain. It plays an important role in lymphocyte migration and activation, T-cell differentiation, neutrophil chemotaxis, and type I interferon induction. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. Class A DOCKs also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus; they are specific GEFs for Rac. The SH3 domain of Dock2 binds to DHR-2 in an autoinhibitory manner; binding of the scaffold protein Elmo to the SH3 domain of Dock2 exposes the DHR-2 domain and promotes GEF activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212855 cd11922, SH3_Sorbs1_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A +N+      E+  R+GE + ++ + D+ WY G    +   G FP  YV+
Sbjct: 5   AKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 55

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 34.4 bits (79), Expect = 0.003
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNY 149
           ALY++  + +++L  + G+ + V E  D  W  G  + +G  G FP  +
Sbjct: 4   ALYDFTGETEEDLSFQRGDRILVTEHLDAEWSRG--RLNGREGIFPRAF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212712 cd11778, SH3_Bzz1_2, Second Src Homology 3 domain of Bzz1 and similar domains

 Score = 34.4 bits (79), Expect = 0.003
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNN-WFEGRIGTRRGIFPVTY 70
          A +++ AQ   E+S+  G+ + +IR  D + W  G I   +G+FP +Y
Sbjct: 4  ALYDYEAQGDDEISIRVGDRIAVIRGDDGSGWTYGEINGVKGLFPTSY 51

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the second C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212822 cd11889, SH3_Cyk3p-like, Src Homology 3 domain of Cytokinesis protein 3 and similar proteins

 Score = 34.4 bits (79), Expect = 0.003
 Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR--GIFPVTYV 71
           +A +++  +T  +L  ++G+L+ ++   D +W+ G++      GIFP  +V
Sbjct: 2  VKAVYSWAGETEGDLGFLEGDLIEVLSIGDGSWWSGKLRRNGAEGIFPSNFV 53

Cytokinesis protein 3 (Cyk3 or Cyk3p) is a component of the actomyosin ring independent cytokinesis pathway in yeast. It interacts with Inn1 and facilitates its recruitment to the bud neck, thereby promoting cytokinesis. Cyk3p contains an N-terminal SH3 domain and a C-terminal transglutaminase-like domain. The Cyk3p SH3 domain binds to the C-terminal proline-rich region of Inn1. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 53

>gnl|CDD|212902 cd11969, SH3_PLCgamma2, Src homology 3 domain of Phospholipase C (PLC) gamma 2

 Score = 34.4 bits (79), Expect = 0.003
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTR-RGIFPVTYVEQ 73
          +A +++ A+   ELS  KG L+  + +    W++G  G + +  FP  YVE 
Sbjct: 3  KALYDYRAKRSDELSFCKGALIHNVSKETGGWWKGDYGGKVQHYFPSNYVED 54

PLCgamma2 is primarily expressed in haematopoietic cells, specifically in B cells. It is activated by tyrosine phosphorylation by B cell receptor (BCR) kinases and is recruited to the plasma membrane where its substrate is located. It is required in pre-BCR signaling and in the maturation of B cells. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212887 cd11954, SH3_ASPP1, Src Homology 3 domain of Apoptosis Stimulating of p53 protein 1

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 4/45 (8%)

Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDG----WYVGSSQRSG 140
           +AL++Y+ QN DEL  +EG+ + ++ + DD     W+   + + G
Sbjct: 4   YALWDYEAQNADELSFQEGDAITILRRKDDSETEWWWARLNDKEG 48

ASPP1, like ASPP2, activates the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73). In addition, it functions in the cytoplasm to regulate the nuclear localization of the transcriptional cofactors YAP and TAZ by inihibiting their phosphorylation; YAP and TAZ are important regulators of cell expansion, differentiation, migration, and invasion. ASPP1 is downregulated in breast tumors expressing wild-type p53. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of ASPP1 contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212785 cd11851, SH3_RIM-BP, Src homology 3 domains of Rab3-interacting molecules (RIMs) binding proteins

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 99  YHALYNYKPQ----NDD---ELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYV 150
             ALY+Y P+    NDD   EL    G+ V V    D DG+Y G  +     G  P N+V
Sbjct: 2   MVALYDYNPETMSPNDDPEEELSFHAGDVVRVYGPMDEDGFYYGELEGGRK-GLVPSNFV 60

Query: 151 E 151
           +
Sbjct: 61  Q 61

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212924 cd11991, SH3_Intersectin1_3, Third Src homology 3 domain (or SH3C) of Intersectin-1

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           Y A+Y Y+     +L  ++G+ + V +K D  W+ G+       G FP NYV
Sbjct: 2   YVAMYTYESNEQGDLTFQQGDVILVTKK-DGDWWTGTV--GDKTGVFPSNYV 50

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212868 cd11935, SH3_Nebulette_C, C-terminal Src Homology 3 domain of Nebulette and LIM-nebulette (or Lasp2)

 Score = 33.8 bits (77), Expect = 0.004
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVE 72
          RA +++ AQ   E+S   G+ +  ++ +D  W  G +    R G+ P  Y+E
Sbjct: 4  RAMYDYSAQDEDEVSFRDGDYIVNVQPIDEGWMYGTVQRTGRTGMLPANYIE 55

Nebulette is a cardiac-specific protein that localizes to the Z-disc. It interacts with tropomyosin and is important in stabilizing actin thin filaments in cardiac muscles. Polymorphisms in the nebulette gene are associated with dilated cardiomyopathy, with some mutations resulting in severe heart failure. Nebulette is a 107kD protein that contains an N-terminal acidic region, multiple nebulin repeats, and a C-terminal SH3 domain. LIM-nebulette, also called Lasp2 (LIM and SH3 domain protein 2), is an alternatively spliced variant of nebulette. Although it shares a gene with nebulette, Lasp2 is not transcribed from a muscle-specific promoter, giving rise to its multiple tissue expression pattern with highest amounts in the brain. It can crosslink actin filaments and it affects cell spreading. Lasp2 is a 34kD protein containing an N-terminal LIM domain, three nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212827 cd11894, SH3_FCHSD2_2, Second Src Homology 3 domain of FCH and double SH3 domains protein 2

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRR---VDNNWFEGRIGTRRGIFPVTYVEQ 73
          +A +++  QT  ELS  +G ++ ++ +    D+ ++EG    R G+FP   VE+
Sbjct: 3  KALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEE 56

FCHSD2 has a domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. It has only been characterized in silico and its function is unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212832 cd11899, SH3_Nck2_1, First Src Homology 3 domain of Nck2 adaptor protein

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           A ++Y  Q D EL++++ E +++++     W V ++  +   G  P NYVER
Sbjct: 8   AKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNA--ANRTGYVPSNYVER 57

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The first SH3 domain of Nck2 binds the PxxDY sequence in the CD3e cytoplasmic tail; this binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212920 cd11987, SH3_Intersectin1_1, First Src homology 3 domain (or SH3A) of Intersectin-1

 Score = 34.2 bits (78), Expect = 0.004
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVER 152
           Y ALY ++ ++ DE+ ++ G+ V V E    + GW  G  +  G  G FP NY E+
Sbjct: 2   YRALYPFEARSHDEITIQPGDIVMVDESQTGEPGWLGG--ELKGKTGWFPANYAEK 55

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212986 cd12053, SH3_CD2AP_1, First Src Homology 3 domain (SH3A) of CD2-associated protein

 Score = 34.0 bits (78), Expect = 0.004
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 103 YNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVE 151
           Y+Y   ++DEL +R GE +  ++K  ++GW  G  + +G  G FP N+V+
Sbjct: 6   YDYDAVHEDELTIRVGEIIRNVKKLEEEGWLEG--ELNGRRGMFPDNFVK 53

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CD2AP. SH3A binds to the PXXXPR motif present in c-Cbl and the cytoplasmic domain of cell adhesion protein CD2. Its interaction with CD2 anchors CD2 at sites of cell contact. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212919 cd11986, SH3_Stac3_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 3 (Stac3)

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
          A + F A    +L    GE +T+I   +  W+ G+IG + G FP+ ++
Sbjct: 4  ALYRFKALEKDDLDFHPGERITVIDDSNEEWWRGKIGEKTGYFPMNFI 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212783 cd11849, SH3_SPIN90, Src homology 3 domain of SH3 protein interacting with Nck, 90 kDa (SPIN90)

 Score = 33.8 bits (78), Expect = 0.004
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           Y ALY++K    + L   EGET  ++E+ +  W++ ++  SG  G  P NYV+
Sbjct: 2   YRALYDFKSAEPNTLSFSEGETFLLLERSNAHWWLVTN-HSGETGYVPANYVK 53

SPIN90 is also called NCK interacting protein with SH3 domain (NCKIPSD), Dia-interacting protein (DIP), 54 kDa vimentin-interacting protein (VIP54), or WASP-interacting SH3-domain protein (WISH). It is an F-actin binding protein that regulates actin polymerization and endocytosis. It associates with the Arp2/3 complex near actin filaments and determines filament localization at the leading edge of lamellipodia. SPIN90 is expressed in the early stages of neuronal differentiation and plays a role in regulating growth cone dynamics and neurite outgrowth. It also interacts with IRSp53 and regulates cell motility by playing a role in the formation of membrane protrusions. SPIN90 contains an N-terminal SH3 domain, a proline-rich domain, and a C-terminal VCA (verprolin-homology and cofilin-like acidic) domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212766 cd11832, SH3_Shank, Src homology 3 domain of SH3 and multiple ankyrin repeat domains (Shank) proteins

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFP 67
          A  ++  Q   E+SL KG+ V ++   +  ++EG +  R G FP
Sbjct: 4  AVKSYSPQEEGEISLHKGDRVKVLSIGEGGFWEGSVRGRTGWFP 47

Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. They bind a variety of membrane and cytosolic proteins, and exist in alternatively spliced isoforms. They are highly enriched in postsynaptic density (PSD) where they interact with the cytoskeleton and with postsynaptic membrane receptors including NMDA and glutamate receptors. They are crucial in the construction and organization of the PSD and dendritic spines of excitatory synapses. There are three members of this family (Shank1, Shank2, Shank3) which show distinct and cell-type specific patterns of expression. Shank1 is brain-specific; Shank2 is found in neurons, glia, endocrine cells, liver, and kidney; Shank3 is widely expressed. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
KOG4226|consensus	379		99.85
KOG4225|consensus	489		99.78
KOG4348|consensus	627		99.78
KOG1029|consensus	1118		99.76
KOG4226|consensus	379		99.75
KOG4348|consensus	627		99.71
KOG4792|consensus	293		99.68
KOG1029|consensus	1118		99.61
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.41
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.4
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.3
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.25
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.19
KOG2070|consensus	661		99.12
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.07
KOG2070|consensus	661		99.06
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	99.03
KOG3632|consensus	1335		99.02
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	99.0
KOG2996|consensus	865		99.0
KOG1118|consensus	366		98.97
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	98.91
KOG2199|consensus	462		98.91
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	98.91
KOG2199|consensus	462		98.9
KOG0162|consensus	1106		98.83
KOG3601|consensus	222		98.81
KOG1118|consensus	366		98.71
KOG4225|consensus	489		98.67
KOG0162|consensus	1106		98.6
KOG2546|consensus	483		98.55
KOG2856|consensus	472		98.49
KOG4792|consensus	293		98.41
KOG2856|consensus	472		98.4
KOG1264|consensus	1267		98.37
KOG1264|consensus	1267		98.34
KOG0515|consensus	752		98.32
KOG2546|consensus	483		98.32
KOG1702|consensus	264		98.25
KOG0515|consensus	752		98.21
KOG2996|consensus	865		98.16
KOG1702|consensus	264		98.15
KOG3875|consensus	362		97.92
KOG4278|consensus	1157		97.91
KOG3655|consensus	484		97.89
KOG3523|consensus	695		97.85
KOG3601|consensus	222		97.85
KOG3655|consensus	484		97.81
KOG1843|consensus	473		97.79
KOG1843|consensus	473		97.57
KOG3875|consensus	362		97.56
KOG2528|consensus	490		97.47
KOG3523|consensus	695		97.43
KOG4278|consensus	1157		97.41
KOG3557|consensus	721		97.16
KOG3775|consensus	482		97.14
KOG2222|consensus	848		97.02
KOG3632|consensus	1335		97.0
KOG4773|consensus	386		96.98
KOG2222|consensus	848		96.95
KOG2528|consensus	490		96.76
KOG3557|consensus	721		96.54
KOG0197|consensus	468		96.39
KOG1451|consensus	812		96.24
KOG4773|consensus	386		96.2
KOG4575|consensus	874		96.16
KOG3775|consensus	482		96.0
KOG0609|consensus	542		95.99
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	95.93
KOG0197|consensus	468		95.86
KOG1451|consensus	812		95.85
KOG3725|consensus	375		95.85
KOG3725|consensus	375		95.63
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	95.4
KOG3771|consensus	460		95.15
KOG4429|consensus	421		95.13
KOG0609|consensus	542		95.08
KOG4575|consensus	874		94.77
KOG4429|consensus	421		94.44
KOG0199|consensus	1039		94.33
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	94.32
KOG3771|consensus	460		93.73
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	93.45
smart00287	63	SH3b Bacterial SH3 domain homologues.	93.1
KOG3565|consensus	640		91.86
PRK10884	206	SH3 domain-containing protein; Provisional	91.39
KOG3565|consensus	640		91.09
KOG0199|consensus	1039		90.54
smart00287	63	SH3b Bacterial SH3 domain homologues.	90.29
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	89.68
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	88.91
KOG3812|consensus	475		88.21
PRK10884	206	SH3 domain-containing protein; Provisional	87.94
KOG3705|consensus	580		85.5
COG3103	205	SH3 domain protein [Signal transduction mechanisms	82.53
KOG3812|consensus	475		82.33

>KOG4226|consensus

Probab=99.85  E-value=5.2e-21  Score=147.86  Aligned_cols=136  Identities=29%  Similarity=0.499  Sum_probs=109.6

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCCCCC----CCCCCccccccCCC--
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS----GAPVDQTLHIDTHS--   94 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~----~~~~~~~~~~~~~~--   94 (191)
                      .+.+.|.|.++.++||++.+|..+.|++++.++||+|..+|+.||||+||+.+..+....    .++...........  
T Consensus       109 ~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ds~~gd~~s~~~~~~~A~a~n~~~s  188 (379)
T KOG4226|consen  109 PAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVDSAAGDSPSFLSLRKAASASNGQGS  188 (379)
T ss_pred             ceEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehhccccccCCccceecchhhcccCCCCc
Confidence            478899999999999999999999999999999999999999999999999987654221    12111111111111  


Q ss_pred             -CCccEEEeeeccCCCCCCccCCCCCEEEEeEEC--CCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         95 -DPVPYHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        95 -~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~--~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                       .-..+.++|.|.+...+||+|++||.+.|+++.  ++.||.+++. .|+.|+||.||+..+....
T Consensus       189 ~vl~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~-~G~vGLVPrNYv~vl~d~~  253 (379)
T KOG4226|consen  189 RVLHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNA-RGQVGLVPRNYVVVLSDGP  253 (379)
T ss_pred             eEEEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhccc-CCccceeecceEEEeccCc
Confidence             112478899999999999999999999999875  6789999997 8999999999999987544

>KOG4225|consensus

Probab=99.78  E-value=6.5e-19  Score=143.81  Aligned_cols=132  Identities=56%  Similarity=1.014  Sum_probs=108.2

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC--------CCCC-----------
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA--------TPSG-----------   81 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~--------~~~~-----------   81 (191)
                      ..+|+|+|.++...||+|.+|++|.|+.+.+..|++|...|+.|+||++||+.+...        .|.+           
T Consensus       232 ~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~e~~qP~~~~P~q~~~~g~a~A~y  311 (489)
T KOG4225|consen  232 AARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPREKAQPARPPPQQVLEQGEAIAKY  311 (489)
T ss_pred             hhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCcccccCcCCCCcccccccccccccC
Confidence            478999999999999999999999999999999999999999999999999988651        1100           


Q ss_pred             --------------------------------------------------------------------------------
Q psy15854         82 --------------------------------------------------------------------------------   81 (191)
Q Consensus        82 --------------------------------------------------------------------------------   81 (191)
                                                                                                      
T Consensus       312 ~F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~~~~~~~~~~~~p~~p~~s~~~~~~~~~  391 (489)
T KOG4225|consen  312 NFNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIKSPKLELPLDYPDLPIPPRSSNELRPLSED  391 (489)
T ss_pred             CCCCCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhhhccccccccccCCCCCCcccchhhcccccc
Confidence                                                                                            


Q ss_pred             -----------CCCCcc----------c-----cccCCCCCccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEE
Q psy15854         82 -----------APVDQT----------L-----HIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGS  135 (191)
Q Consensus        82 -----------~~~~~~----------~-----~~~~~~~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~  135 (191)
                                 ....+.          .     +.........++|+|.|.++..+||-|..||+|.|++++++||+.|+
T Consensus       392 s~~~~~~~~~t~~~~q~~~n~~qepr~~~~~~~~~qt~~~~l~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGt  471 (489)
T KOG4225|consen  392 SMKNAWPQTHTQSSTQPPENFPQEPRVTEKNDAHSQTSSEPLKYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGT  471 (489)
T ss_pred             hhhhcccccccccccCCCCCcccccccccccCcccCCCCCcccceeccccCCCCchhheeccCCEEeeeecccCcceecc
Confidence                       000000          0     01111223357999999999999999999999999999999999997


Q ss_pred             eCCCCcEEEEcCCCeee
Q psy15854        136 SQRSGCFGTFPGNYVER  152 (191)
Q Consensus       136 ~~~~g~~G~vP~~~v~~  152 (191)
                      ..++|+.|.||.|||+.
T Consensus       472 s~rtg~fGtFPgnyV~~  488 (489)
T KOG4225|consen  472 SRRTGKFGTFPGNYVKR  488 (489)
T ss_pred             ceecccccccCcccccc
Confidence            77799999999999985

>KOG4348|consensus

Probab=99.78  E-value=2.5e-19  Score=146.26  Aligned_cols=138  Identities=30%  Similarity=0.625  Sum_probs=109.8

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCCCC------------------
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATP------------------   79 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~------------------   79 (191)
                      ..+.|.+.|.|.++.+++|.|+.|++|.++....+|||.|.++|+.||||.|||.++..+..                  
T Consensus        99 ~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~~sde~~~aqd~~~S~stlags  178 (627)
T KOG4348|consen   99 QARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPTPSDESAAAQDPAASASTLAGS  178 (627)
T ss_pred             cceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCCCCcchhhhcCcccchhhhcCc
Confidence            35579999999999999999999999999999999999999999999999999999865411                  


Q ss_pred             -----CC------------------------------------------------------C-CCCccccccCC------
Q psy15854         80 -----SG------------------------------------------------------A-PVDQTLHIDTH------   93 (191)
Q Consensus        80 -----~~------------------------------------------------------~-~~~~~~~~~~~------   93 (191)
                           +.                                                      + ...+..+....      
T Consensus       179 t~~~ps~s~~SE~a~gsv~qPKkI~g~gfgdIfk~~pVklr~rt~~sete~~p~~~~i~~~l~asT~s~d~tktd~~~~t  258 (627)
T KOG4348|consen  179 TARTPSKSIGSEVAMGSVTQPKKIDGTGFGDIFKPAPVKLRLRTKFSETEKKPEKPFISSALSASTQSVDITKTDTAETT  258 (627)
T ss_pred             CCCCCcccccchhhcccccCcccccCCCcccccCCccceecccccccccccccccchhhhccCccccCccccccccccch
Confidence                 00                                                      0 00000000000      


Q ss_pred             CCCccEEEeeeccCCCCCCccCCCCCEEEEeEEC--CCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        94 ~~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~--~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ...-.|+++|.|.++..++|.++.||++.++.+.  +-|||.|..  +|+.|.||-||+..+....
T Consensus       259 KtKeycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGEL--nGk~GvFPDNFv~lv~~~l  322 (627)
T KOG4348|consen  259 KTKEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGEL--NGKKGVFPDNFVELVQVPL  322 (627)
T ss_pred             hhhhheeeeeeecCCCccceeeccccEEEEecccccccceeeeee--cCccccCCchhhhhcCCcc
Confidence            0122699999999999999999999999988765  558999999  7999999999999988543

>KOG1029|consensus

Probab=99.76  E-value=5.8e-19  Score=152.19  Aligned_cols=123  Identities=31%  Similarity=0.635  Sum_probs=103.9

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CC---eeeEecCCchhcccCCCCCCCCCCccccccCCCC
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GT---RRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSD   95 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g---~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~   95 (191)
                      .+.++.+|.+.....|++..|++|.+..+...|||.|.+  +|   +-||||++||+.+...+.-..+...+        
T Consensus       981 iAqVia~yvAs~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s~raTPa~~~-------- 1052 (1118)
T KOG1029|consen  981 IAQVIADYVASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGSGRATPATRP-------- 1052 (1118)
T ss_pred             hhhhhhhhhccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCCCcCCCCCCc--------
Confidence            467789999999999999999999999999999999976  45   45999999999986542211222211        


Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      ..+++++|||.++..++|+|.+||+|.|+.+.+..||.|..  +|..|+||+|||...
T Consensus      1053 v~qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~--ng~sGLFPSNYV~k~ 1108 (1118)
T KOG1029|consen 1053 VCQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGER--NGKSGLFPSNYVQKQ 1108 (1118)
T ss_pred             cceeEEeeccccCCcccccccCCCEEEecCCCChhhhcccc--cCccccCcccccccc
Confidence            23589999999999999999999999999999999999998  799999999999653

>KOG4226|consensus

Probab=99.75  E-value=1.1e-17  Score=129.59  Aligned_cols=133  Identities=35%  Similarity=0.563  Sum_probs=103.8

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcccCCC-------------------CC
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQSRAT-------------------PS   80 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~~-------------------~~   80 (191)
                      .+.|.+||.++...+|-+++++.+.++.. ...||++++ ..+.|++|++||+..+...                   ++
T Consensus         6 ~vvak~dy~aq~~qeldikkner~~lldd-sk~wwrvrns~n~tgyvpsnyverkn~~~~~si~knlkd~~g~kt~~k~s   84 (379)
T KOG4226|consen    6 IVVAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNSANRTGYVPSNYVERKNSLKKGSIVKNLKDTLGLKTRRKTS   84 (379)
T ss_pred             EEEEEechhcccchhccccccceEEEEcC-CccceeeecccccCCcccchhhhcccchhhhHHHHhhhhccccccccCCC
Confidence            57889999999999999999999988885 468999998 5799999999998754320                   00


Q ss_pred             C--C-CCCcccc---cc-CCCCCccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         81 G--A-PVDQTLH---ID-THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        81 ~--~-~~~~~~~---~~-~~~~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .  . +.+....   ++ .......+.+.|.|.++..+||+|.+|..|.|+++..+|||.|..  +|+.||||+||+.+.
T Consensus        85 ~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~--ng~VGWFPSNYv~E~  162 (379)
T KOG4226|consen   85 ARDASPSPSTDAEYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSY--NGQVGWFPSNYVTEE  162 (379)
T ss_pred             ccccCCCCCccccCCcchhhhcCCceEEEEeeccccccccccccCcEEEEEEeccCcceeccc--CCeeccccccceehh
Confidence            0  0 0000000   00 001133588899999999999999999999999999999999998  799999999999986


Q ss_pred             ccc
Q psy15854        154 SLA  156 (191)
Q Consensus       154 ~~~  156 (191)
                      ..+
T Consensus       163 ~ds  165 (379)
T KOG4226|consen  163 VDS  165 (379)
T ss_pred             ccc
Confidence            554

>KOG4348|consensus

Probab=99.71  E-value=1.5e-18  Score=141.76  Aligned_cols=134  Identities=28%  Similarity=0.588  Sum_probs=108.6

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC---C--------------CCC--
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA---T--------------PSG--   81 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~---~--------------~~~--   81 (191)
                      .+++-|||+++.+++|....|++|+-+.+.+++||.|..+|++|+||.++|.++...   +              ++.  
T Consensus         3 d~ive~dy~a~hddelti~vgeii~nvkk~e~gw~egelngrrg~fpdnfV~eik~e~k~d~l~nk~~r~~l~q~~s~n~   82 (627)
T KOG4348|consen    3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLEEGWLEGELNGRRGQFPDNFVVEIKVEFKDDDLVNKLSRDSLVQMTSRNP   82 (627)
T ss_pred             ceeeecccccccCceeeEeHHHHHHhhhhhccceeeceeccccccCCchhhhhhhhhcccccccccccccchhhcccCCC
Confidence            467889999999999999999999988888899999999999999999999987543   0              000  


Q ss_pred             CCCCcccc---ccCCCCCccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         82 APVDQTLH---IDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        82 ~~~~~~~~---~~~~~~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      +...+...   ........+|++.|.|.++..++|.|..||+|.+++....|||.|..  +|..|.||.|||..+.-.
T Consensus        83 l~~~q~v~rtn~~~q~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~L--ngk~GmFPsNFVkel~~~  158 (627)
T KOG4348|consen   83 LTVHQQVERTNPPPQPQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKL--NGKVGMFPSNFVKELPTP  158 (627)
T ss_pred             ccccCcccccCCCCCccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhcee--cCcccccchhhceecCCC
Confidence            11111111   11111234699999999999999999999999999999999999999  799999999999987653

>KOG4792|consensus

Probab=99.68  E-value=1.4e-16  Score=120.30  Aligned_cols=137  Identities=26%  Similarity=0.420  Sum_probs=106.6

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcccCCC-----------CCCCCCC-
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQSRAT-----------PSGAPVD-   85 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~~-----------~~~~~~~-   85 (191)
                      ...++++|+|.+....+|.|++|+++.++.+.+..||..++ .|++|++|.+||+.+....           ..+.+++ 
T Consensus       124 ~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~e~si~q~~  203 (293)
T KOG4792|consen  124 AEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASASVSALIGGASESSIPQSG  203 (293)
T ss_pred             hhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhhcccccccCCcccccCCCCC
Confidence            33578899999999999999999999999999999999998 7999999999999865421           0111110 


Q ss_pred             -------------ccccccCCCCCccEEEeeeccCC--CCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCe
Q psy15854         86 -------------QTLHIDTHSDPVPYHALYNYKPQ--NDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV  150 (191)
Q Consensus        86 -------------~~~~~~~~~~~~~~~~~~d~~~~--~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v  150 (191)
                                   ..........+..++++++-.+.  ....|.+++||+|.|++++..|.|.+..  +|+.|.||..||
T Consensus       204 ~g~e~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegEl--nGk~G~fPfThv  281 (293)
T KOG4792|consen  204 GGAERFSSASTSSDTPLPLQQNLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGEL--NGKIGHFPFTHV  281 (293)
T ss_pred             CCCCCCCCCCcccCCcCccccCCChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeee--cCccccccceeE
Confidence                         00011111235567888776665  3456999999999999999999999999  899999999999


Q ss_pred             eeccccc
Q psy15854        151 ERASLAL  157 (191)
Q Consensus       151 ~~i~~~~  157 (191)
                      +.....+
T Consensus       282 rf~d~~~  288 (293)
T KOG4792|consen  282 RFTDVQN  288 (293)
T ss_pred             EeeccCC
Confidence            9876554

>KOG1029|consensus

Probab=99.61  E-value=1.5e-15  Score=131.39  Aligned_cols=133  Identities=24%  Similarity=0.520  Sum_probs=100.4

Q ss_pred             ceEEEeecCC-CCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCch-hcccCCCCCCCCCCccccccCCCCCc
Q psy15854         20 GQARAKFNFV-AQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV-EQQSRATPSGAPVDQTLHIDTHSDPV   97 (191)
Q Consensus        20 ~~~~a~~~~~-~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (191)
                      ..+.+++.|. +....+|.|..|+.+.++++ ++.||.|+.+++.|.||++|. .........+-+.....    ...+.
T Consensus       906 eq~ya~~~~~e~vEq~dlt~~egd~iLvtek-dgeww~gt~~~r~gifPan~y~r~~~q~gs~Tp~k~g~~----~kkpe  980 (1118)
T KOG1029|consen  906 EQLYAVYPYFEAVEQGDLTFHEGDEILVTEK-DGEWWTGTCGDREGIFPANYYVRPKDQEGSGTPPKQGPT----PKKPE  980 (1118)
T ss_pred             ceeEEEecccccccCCCccccccceEEEeec-cCceeccccCCccccccccceeeehhccCCCCCCCCCCC----CCCch
Confidence            3466665555 48889999999999988887 568999999999999999954 44322211111111111    11123


Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCC---cEEEEcCCCeeeccccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSG---CFGTFPGNYVERASLAL  157 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g---~~G~vP~~~v~~i~~~~  157 (191)
                      .+.++.+|.+..++.|++..|++|.|.++...|||.|..+++|   +.||||.+||..+++.+
T Consensus       981 iAqVia~yvAs~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s 1043 (1118)
T KOG1029|consen  981 IAQVIADYVASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGS 1043 (1118)
T ss_pred             hhhhhhhhhccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCC
Confidence            4788999999999999999999999999999999999876556   46999999999998664

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.41  E-value=4.9e-13  Score=79.42  Aligned_cols=49  Identities=41%  Similarity=0.817  Sum_probs=44.7

Q ss_pred             EeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchh
Q psy15854         24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE   72 (191)
Q Consensus        24 a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~   72 (191)
                      |+++|.++..++|+|.+|+.+.+++..+++||.++++|+.|+||++||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence            6899999999999999999999999989999999999999999999985

...

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.40  E-value=7.2e-13  Score=78.70  Aligned_cols=49  Identities=51%  Similarity=1.052  Sum_probs=44.3

Q ss_pred             EeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCee
Q psy15854        101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE  151 (191)
Q Consensus       101 ~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~  151 (191)
                      |+++|.++..++|+|++||+|.++...+++||.+++  +|+.|+||.+||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRN--TGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEE--TTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEE--CCEEEEECHHhCC
Confidence            689999999999999999999999998999999998  7999999999985

...

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.30  E-value=7.3e-12  Score=76.26  Aligned_cols=54  Identities=41%  Similarity=0.885  Sum_probs=47.7

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEe-EECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~-~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      +++|++||.+...++|+|.+||+|.++ +...++||.++.  +|+.||||.+||+++
T Consensus         1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~--~g~~G~~P~~~v~~~   55 (55)
T PF07653_consen    1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGEN--NGRRGWFPSSYVEEI   55 (55)
T ss_dssp             EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEE--TTEEEEEEGGGEEEH
T ss_pred             CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEE--CCcEEEEcHHHEEEC
Confidence            378999999999999999999999999 777889999999  799999999999874

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.25  E-value=1.5e-11  Score=74.92  Aligned_cols=53  Identities=40%  Similarity=0.765  Sum_probs=47.3

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEE-EecCCCEEEEEeCCeeeEecCCchhc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLI-RRVDNNWFEGRIGTRRGIFPVTYVEQ   73 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~-~~~~~~w~~~~~~g~~G~~P~~~v~~   73 (191)
                      .++|+++|.+...++|+|.+||++.++ +...++||.+..+|+.||||.+|+++
T Consensus         1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~   54 (55)
T PF07653_consen    1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEE   54 (55)
T ss_dssp             EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEE
T ss_pred             CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEE
Confidence            378999999999999999999999999 77778999999999999999999976

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.19  E-value=5.7e-11  Score=70.22  Aligned_cols=48  Identities=35%  Similarity=0.761  Sum_probs=43.8

Q ss_pred             EEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcC
Q psy15854        100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPG  147 (191)
Q Consensus       100 ~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~  147 (191)
                      +|+|+|.+...++|++++||.+.|++..+.+||.++...++++|+||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            589999999999999999999999999999999999976689999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>KOG2070|consensus

Probab=99.12  E-value=6e-11  Score=98.98  Aligned_cols=67  Identities=28%  Similarity=0.587  Sum_probs=59.8

Q ss_pred             CCccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccchhhhcc
Q psy15854         95 DPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLALRWVENA  163 (191)
Q Consensus        95 ~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~~~~~~~  163 (191)
                      .+..++|.|.|.+...+||+|.+||+|.|.+..++|||.|+.  +|+.||||++||..|..+++..+.+
T Consensus        16 ~pLvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTl--ng~TGWFPsnYV~eik~e~pLs~~~   82 (661)
T KOG2070|consen   16 NPLVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTL--NGRTGWFPSNYVREIKSEKPLSPKS   82 (661)
T ss_pred             CceEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccc--cCccCccchHHHHHHhhcCCCCccc
Confidence            345689999999999999999999999999999999999999  7999999999999998766655544

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.07  E-value=3.8e-10  Score=66.65  Aligned_cols=46  Identities=30%  Similarity=0.639  Sum_probs=41.9

Q ss_pred             EEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeC--CeeeEecC
Q psy15854         23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG--TRRGIFPV   68 (191)
Q Consensus        23 ~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~   68 (191)
                      +|+|+|.++..++|+|.+|+.+.|++..+.+||.++..  +++|+||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            58999999999999999999999999999999999983  79999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>KOG2070|consensus

Probab=99.06  E-value=1.2e-10  Score=97.12  Aligned_cols=59  Identities=37%  Similarity=0.728  Sum_probs=54.8

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCCCC
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATP   79 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~   79 (191)
                      .++|.|.|.+...+||+|.+||+|.|.+..++|||+|.+.|++||||++||.++....|
T Consensus        19 vvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik~e~p   77 (661)
T KOG2070|consen   19 VVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIKSEKP   77 (661)
T ss_pred             EEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHhhcCC
Confidence            58999999999999999999999999999999999999999999999999999875433

>smart00326 SH3 Src homology 3 domains

Probab=99.03  E-value=1.4e-09  Score=66.01  Aligned_cols=55  Identities=45%  Similarity=0.868  Sum_probs=49.8

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .++++++|.+....+|++.+||.+.+++....+||.++.. .++.|+||.+|++.+
T Consensus         4 ~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~-~~~~G~vP~~~v~~~   58 (58)
T smart00326        4 QVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLG-RGKEGLFPSNYVEEI   58 (58)
T ss_pred             EEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeC-CCCEEEEchHHEEEC
Confidence            4789999999999999999999999999988899999985 389999999998753

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG3632|consensus

Probab=99.02  E-value=5.4e-10  Score=99.59  Aligned_cols=135  Identities=27%  Similarity=0.490  Sum_probs=101.0

Q ss_pred             cceEEEeecCCCC--------CCCCccccCCCEEEEEEecC-CCEEEEEeCCeeeEecCCchhcccCCC-----------
Q psy15854         19 EGQARAKFNFVAQ--------THLELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYVEQQSRAT-----------   78 (191)
Q Consensus        19 ~~~~~a~~~~~~~--------~~~els~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~~~~~~~-----------   78 (191)
                      ...+.|+|||++-        .+.||.|++|++|.|+...+ ++++.|..+|++|++|+|+|.++...+           
T Consensus      1138 arifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~eq~~~r~rqG~ 1217 (1335)
T KOG3632|consen 1138 ARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDNEQTDRRWRQGL 1217 (1335)
T ss_pred             ceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccCCcHHHHHHHHhcc
Confidence            4568999999983        56889999999999998654 789999999999999999999875432           


Q ss_pred             -CCC----------CCCCccccccCCCCCccEEEeeeccCCC-------CCCccCCCCCEEEEeEEC-CCCEEEEEeCCC
Q psy15854         79 -PSG----------APVDQTLHIDTHSDPVPYHALYNYKPQN-------DDELELREGETVFVMEKC-DDGWYVGSSQRS  139 (191)
Q Consensus        79 -~~~----------~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~  139 (191)
                       |..          ....+.....  ..+....+.+||.+++       ..+|.|..|++|.|.+.. ++|+++|..  +
T Consensus      1218 lPsv~~~e~~~gs~~s~g~~k~vp--~~p~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGel--n 1293 (1335)
T KOG3632|consen 1218 LPSVPTEEMRKGSAFSDGQQKMVP--WPPRQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGEL--N 1293 (1335)
T ss_pred             CCCCCchhhhcccccCCCCccccC--CchhhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCccccccc--C
Confidence             111          0001110000  1233578889998763       347999999999998875 568999998  7


Q ss_pred             CcEEEEcCCCeeeccccc
Q psy15854        140 GCFGTFPGNYVERASLAL  157 (191)
Q Consensus       140 g~~G~vP~~~v~~i~~~~  157 (191)
                      |+.|.+|.++++....+.
T Consensus      1294 gqkglvpsnfle~p~~e~ 1311 (1335)
T KOG3632|consen 1294 GQKGLVPSNFLEAPNAEK 1311 (1335)
T ss_pred             CccCccccccccCCCccc
Confidence            999999999999875443

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=99.00  E-value=2.3e-09  Score=64.17  Aligned_cols=52  Identities=46%  Similarity=0.909  Sum_probs=47.1

Q ss_pred             EEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCee
Q psy15854         99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE  151 (191)
Q Consensus        99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~  151 (191)
                      ++++++|.+...++|++.+||.+.+++....+||.++.. .++.||||.+|++
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~-~~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLL-GGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEEC-CCCEEEEccccCc
Confidence            689999999999999999999999999988899999985 3399999999986

>KOG2996|consensus

Probab=99.00  E-value=7.5e-10  Score=94.21  Aligned_cols=54  Identities=37%  Similarity=0.737  Sum_probs=47.2

Q ss_pred             EEEeeeccCCCCCCccCCCCCEEEEeEEC--CCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         99 YHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~--~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      +++-|||-+..-.+|+|+.||+|.+..+.  +.|||.|..  +|+.||||.+||++-.
T Consensus       808 AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGev--ngrvGwFPstYVee~~  863 (865)
T KOG2996|consen  808 AVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEV--NGRVGWFPSTYVEEDD  863 (865)
T ss_pred             eeeccccCCCchhhcccccCCEEEEehhccccCceeccee--cCcccccccccccccC
Confidence            56668888888889999999999998876  469999999  7999999999998754

>KOG1118|consensus

Probab=98.97  E-value=4.2e-10  Score=88.99  Aligned_cols=57  Identities=37%  Similarity=0.711  Sum_probs=53.9

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ..|+++|+|+++.+.||-|+.|++|.++...+++||.|...|..||||.+||+.+.+
T Consensus       307 p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlvp  363 (366)
T KOG1118|consen  307 PCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLVP  363 (366)
T ss_pred             hhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEecc
Confidence            368999999999999999999999999999999999999999999999999998754

>smart00326 SH3 Src homology 3 domains

Probab=98.91  E-value=4.5e-09  Score=63.70  Aligned_cols=53  Identities=42%  Similarity=0.923  Sum_probs=49.1

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeC-CeeeEecCCchhc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG-TRRGIFPVTYVEQ   73 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~-g~~G~~P~~~v~~   73 (191)
                      .++++++|.+....+|+|.+|+.+.++.....+||.++.. ++.|+||.+|++.
T Consensus         4 ~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~   57 (58)
T smart00326        4 QVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEE   57 (58)
T ss_pred             EEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEE
Confidence            5789999999999999999999999999888899999986 9999999999865

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG2199|consensus

Probab=98.91  E-value=3.8e-10  Score=91.99  Aligned_cols=58  Identities=29%  Similarity=0.583  Sum_probs=54.0

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhccc
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   75 (191)
                      ..++++|+|||++...+||+|++|++|.|++.....||.|.+.+..|+||.+||...-
T Consensus       214 ~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l  271 (462)
T KOG2199|consen  214 VVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL  271 (462)
T ss_pred             cchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence            4557999999999999999999999999999999999999999999999999998654

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=98.91  E-value=6e-09  Score=62.33  Aligned_cols=51  Identities=39%  Similarity=0.859  Sum_probs=47.0

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCC-eeeEecCCchh
Q psy15854         22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVE   72 (191)
Q Consensus        22 ~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g-~~G~~P~~~v~   72 (191)
                      ++++++|.+...++|+|.+|+.+.+++....+||.++..+ +.|+||.+|++
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence            5789999999999999999999999998788999999865 99999999985

>KOG2199|consensus

Probab=98.90  E-value=4e-10  Score=91.86  Aligned_cols=58  Identities=28%  Similarity=0.635  Sum_probs=53.2

Q ss_pred             CCccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         95 DPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        95 ~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ....++++|||++.+.+||+|++||+|.|++..+..||.|.+  .+..|+||.|||..+-
T Consensus       214 ~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~--~~~~GlFPsnfVT~~l  271 (462)
T KOG2199|consen  214 VVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGEN--HRGIGLFPSNFVTADL  271 (462)
T ss_pred             cchhhhhhhcccccCCCccceecCcEEEEcccCCcchhcccc--CCcccccchhhhhhhh
Confidence            345799999999999999999999999999999999999999  5788999999998865

>KOG0162|consensus

Probab=98.83  E-value=5e-09  Score=91.33  Aligned_cols=55  Identities=27%  Similarity=0.632  Sum_probs=52.0

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      ..+.|+|+|.++..+||+|++|++|.++.++.+|||.+..+|++||||.+||+++
T Consensus      1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTEY 1106 (1106)
T ss_pred             cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCccccccccccccC
Confidence            4699999999999999999999999999999999999999999999999999763

>KOG3601|consensus

Probab=98.81  E-value=1.5e-09  Score=81.80  Aligned_cols=131  Identities=26%  Similarity=0.518  Sum_probs=95.8

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEEeCCeeeEecCCchhcccCC-----------------------
Q psy15854         22 ARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYVEQQSRA-----------------------   77 (191)
Q Consensus        22 ~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~~~~~~-----------------------   77 (191)
                      ..++++|.....+||+|.+|+.+.++...+ -.|......|..|++|.||.......                       
T Consensus         3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~~~~~wve~~i~r~~ae~~l~~~~~G~f   82 (222)
T KOG3601|consen    3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRMKPHEWVEGLIPRPLAEDLLSKKRDGDF   82 (222)
T ss_pred             hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCcccccccccccceecccccchhhhhhhccCcchh
Confidence            456789999999999999999998887644 36888888999999999887432111                       


Q ss_pred             -------CCCC------------------------------CCCC-cccc-----------------cc-------CCCC
Q psy15854         78 -------TPSG------------------------------APVD-QTLH-----------------ID-------THSD   95 (191)
Q Consensus        78 -------~~~~------------------------------~~~~-~~~~-----------------~~-------~~~~   95 (191)
                             .|+.                              .+.. ...+                 ..       +...
T Consensus        83 l~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~skfnslnplv~Y~rt~s~~r~~qi~l~d~~~~~~~~~~~~~  162 (222)
T KOG3601|consen   83 LIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWSSKFNSLNPLVSYHRTASQSRNQQIFLRDMEPPPAPLPPAPT  162 (222)
T ss_pred             hhhhhhcCcccccccccCCCCceeccccccCccccccchhhccCCCCCcccCcccccccceeeeecccccccccCCCCcc
Confidence                   0000                              0000 0000                 00       0001


Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      .....++|+|....+.++.+++|+.+.++...+.-||.|+.  -|..|+||++|+....
T Consensus       163 ~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~--lg~agiFpagyv~p~d  219 (222)
T KOG3601|consen  163 NYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSK--LGRAGIFPAGYVAPSD  219 (222)
T ss_pred             chhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccc--cCceeeecCccccccc
Confidence            12467889999999999999999999999999999999998  6999999999987653

>KOG1118|consensus

Probab=98.71  E-value=9.6e-09  Score=81.41  Aligned_cols=56  Identities=38%  Similarity=0.779  Sum_probs=52.2

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ..|+++|||+++..+||.|+.||+|.++..-+.+||.|..  .|..|+||.+||+++-
T Consensus       307 p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~--~g~sG~FPvnYv~vlv  362 (366)
T KOG1118|consen  307 PCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEK--HGESGMFPVNYVEVLV  362 (366)
T ss_pred             hhheeeeccCCCCCCccCcccCceeeehhhcCcchhhhee--cCccCccccceeEEec
Confidence            3599999999999999999999999999999999999998  7999999999999864

>KOG4225|consensus

Probab=98.67  E-value=2.3e-08  Score=82.60  Aligned_cols=58  Identities=33%  Similarity=0.720  Sum_probs=54.6

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      .++++|+|.++...||.|.+||+|.|+.+.+..|+.|..  .|..|+||++||+.+....
T Consensus       232 ~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEh--hGr~GifP~sYvE~~~~~e  289 (489)
T KOG4225|consen  232 AARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEH--HGRVGIFPASYVEILTPRE  289 (489)
T ss_pred             hhhheeccccCCccccccCCCCEEEEEeeccCceeeeee--cceecceechheeecCccc
Confidence            378999999999999999999999999999999999999  7999999999999998754

>KOG0162|consensus

Probab=98.60  E-value=5e-08  Score=85.28  Aligned_cols=54  Identities=39%  Similarity=0.776  Sum_probs=50.9

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .|.|+|+|.++..+||+|++|++|.++.+...|||.|+.  +|++||||.+||.++
T Consensus      1053 ~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~--~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1053 VCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKL--NGKEGLFPGNYVTEY 1106 (1106)
T ss_pred             ceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhcc--CCccccccccccccC
Confidence            599999999999999999999999999999999999997  799999999999764

>KOG2546|consensus

Probab=98.55  E-value=2.9e-08  Score=81.74  Aligned_cols=54  Identities=48%  Similarity=0.961  Sum_probs=51.1

Q ss_pred             EEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      +.++|||.+...++|+|..|-++.+++++++|||+|..  ++..|+||.|||+.+.
T Consensus       426 Vv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~--~~VTglFpgnyve~~~  479 (483)
T KOG2546|consen  426 VVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQ--DGVTGLFPGNYVEPLK  479 (483)
T ss_pred             HHhhcccccccccccccccccEEEEEEecCCcchhhee--cCcceeccCccccccc
Confidence            67899999999999999999999999999999999998  7999999999999875

>KOG2856|consensus

Probab=98.49  E-value=2.9e-08  Score=80.45  Aligned_cols=56  Identities=39%  Similarity=0.734  Sum_probs=50.0

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      ++++++|||.+++.++|+|+.||.+..+... .-||+.|+.. .|+.|++|+|||+.+
T Consensus       415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~-~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLD-SGRVGLYPANYVECI  471 (472)
T ss_pred             eeEEeeeccCcccccchhhccccHhhhcCCcccccccccccc-CCcccccchhhhhcc
Confidence            5799999999999999999999999877665 4689999985 699999999999865

>KOG4792|consensus

Probab=98.41  E-value=1.5e-07  Score=71.80  Aligned_cols=60  Identities=23%  Similarity=0.509  Sum_probs=54.5

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..+.++|||.+...++|.|++||++.|+.+....||..++. .|+.|.+|..||+.+....
T Consensus       125 ~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns-~Gk~GmIPvpYVe~~~~~~  184 (293)
T KOG4792|consen  125 EYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNS-EGKRGMIPVPYVEKYRPAS  184 (293)
T ss_pred             hheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhcc-CCcccceechHHHhhhhhh
Confidence            34778999999999999999999999999998899999997 8999999999999977654

>KOG2856|consensus

Probab=98.40  E-value=7.1e-08  Score=78.23  Aligned_cols=55  Identities=31%  Similarity=0.609  Sum_probs=48.5

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEEeC-CeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIG-TRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~~~-g~~G~~P~~~v~~~   74 (191)
                      ..++++|||.++..++|+|++|+.+..+...+ -||+.|++. |+.|++|+|||+-+
T Consensus       415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence            35899999999999999999999998777654 599999996 99999999999754

>KOG1264|consensus

Probab=98.37  E-value=2.1e-07  Score=82.32  Aligned_cols=59  Identities=31%  Similarity=0.581  Sum_probs=53.9

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCC-eeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g-~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.+...+||+|.++-+|..+++.+++||.|+.+| ..+|||++||+++..+
T Consensus       774 ~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~  833 (1267)
T KOG1264|consen  774 QVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTA  833 (1267)
T ss_pred             chhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhccc
Confidence            4568999999999999999999999999999999999999975 7899999999998763

>KOG1264|consensus

Probab=98.34  E-value=3.5e-07  Score=80.95  Aligned_cols=62  Identities=35%  Similarity=0.577  Sum_probs=55.6

Q ss_pred             CCccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         95 DPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        95 ~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..+.++|+|+|.+...+||+|.++-+|..+++..+|||.|.+. ....+|||++||+.|..++
T Consensus       773 ~~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYG-g~iq~wfPsnyVeei~~~~  834 (1267)
T KOG1264|consen  773 PQVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYG-GRIQQWFPSNYVEEISTAD  834 (1267)
T ss_pred             cchhhhhhhccccCCcccccccccceeEeeeccCCceeecccc-cceeeeccHHHhhhhcccc
Confidence            3467999999999999999999999999999999999999994 4468999999999998754

>KOG0515|consensus

Probab=98.32  E-value=3.5e-07  Score=77.56  Aligned_cols=58  Identities=33%  Similarity=0.557  Sum_probs=51.7

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecC---CCEEEEEeCCeeeEecCCchhcccC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVD---NNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~---~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ...+.|++||+++..+||+|..||.++|+++++   ..||.++++|++|+||.+|+-.+..
T Consensus       683 ~G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPr  743 (752)
T KOG0515|consen  683 KGVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPR  743 (752)
T ss_pred             cceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCcc
Confidence            456899999999999999999999999999855   3799999999999999999977644

>KOG2546|consensus

Probab=98.32  E-value=3e-07  Score=75.90  Aligned_cols=55  Identities=29%  Similarity=0.645  Sum_probs=52.1

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhccc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   75 (191)
                      ++.++|||.+..+++|+|.+|-++.++++.+++||+|..+|..|+||.|||+.+.
T Consensus       425 kVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~  479 (483)
T KOG2546|consen  425 KVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK  479 (483)
T ss_pred             HHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence            4788999999999999999999999999999999999999999999999998874

>KOG1702|consensus

Probab=98.25  E-value=1.4e-06  Score=65.49  Aligned_cols=60  Identities=33%  Similarity=0.748  Sum_probs=54.1

Q ss_pred             CCCccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        94 ~~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      +.+..+.+.|||.++..++++|.-||.|..++..++||.+|+..++|..|..|+||++-+
T Consensus       205 ~~gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v  264 (264)
T KOG1702|consen  205 CTGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV  264 (264)
T ss_pred             CCCccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence            344568999999999999999999999999999999999999988999999999999753

>KOG0515|consensus

Probab=98.21  E-value=5.8e-07  Score=76.28  Aligned_cols=55  Identities=31%  Similarity=0.546  Sum_probs=48.9

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECC---CCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCD---DGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~---~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      .+.++|||+++..+||+|..||.+.|+.+.+   ..||+++.  +|++|+||++|+-.+.
T Consensus       685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~l--ng~eGyVPRnylgLyP  742 (752)
T KOG0515|consen  685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARL--NGEEGYVPRNYLGLYP  742 (752)
T ss_pred             eeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhh--cCcccccchhhhhcCc
Confidence            3789999999999999999999999999854   46999997  7999999999987653

>KOG2996|consensus

Probab=98.16  E-value=1.9e-06  Score=73.90  Aligned_cols=55  Identities=38%  Similarity=0.770  Sum_probs=48.1

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecC--CCEEEEEeCCeeeEecCCchhccc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~--~~w~~~~~~g~~G~~P~~~v~~~~   75 (191)
                      .+++-|||-+..-.+|+|+.|+++.++.+.+  .|||+|...|+.||||++||++..
T Consensus       807 ~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~~  863 (865)
T KOG2996|consen  807 TAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEEDD  863 (865)
T ss_pred             eeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccccC
Confidence            4667788888888999999999999988755  489999999999999999998753

>KOG1702|consensus

Probab=98.15  E-value=2.6e-06  Score=64.10  Aligned_cols=58  Identities=26%  Similarity=0.576  Sum_probs=51.4

Q ss_pred             CCCcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhc
Q psy15854         16 KLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQ   73 (191)
Q Consensus        16 ~~~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~   73 (191)
                      ..++..+++.|||.++..++.+|.-|+-|..++..+.||..|..  .|..|+.|+||++-
T Consensus       204 ~~~gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~  263 (264)
T KOG1702|consen  204 SCTGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEF  263 (264)
T ss_pred             CCCCccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheee
Confidence            44456799999999999999999999999988888889998866  79999999999864

>KOG3875|consensus

Probab=97.92  E-value=1.7e-06  Score=68.90  Aligned_cols=60  Identities=25%  Similarity=0.351  Sum_probs=50.5

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEEC-----CCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKC-----DDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-----~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      .+++++|||.+..+.||+|++||.+.|..+.     ...||..+....+..|+||.|||+.+..+
T Consensus       269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~rq  333 (362)
T KOG3875|consen  269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGRQ  333 (362)
T ss_pred             HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhcC
Confidence            4689999999999999999999999887765     23588877654667899999999999763

>KOG4278|consensus

Probab=97.91  E-value=1.4e-05  Score=69.89  Aligned_cols=57  Identities=25%  Similarity=0.517  Sum_probs=49.4

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECC-CCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~-~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..+.++|||.+...+.|++.+||.++|+..+. +.|+..+.. +|+ ||||.||+.++..
T Consensus        91 NLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartK-NGq-GWVPSNyItPvNS  148 (1157)
T KOG4278|consen   91 NLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTK-NGQ-GWVPSNYITPVNS  148 (1157)
T ss_pred             ceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeeccc-CCC-ccccccccccccc
Confidence            35899999999999999999999999999885 458888874 666 9999999998754

>KOG3655|consensus

Probab=97.89  E-value=4.6e-06  Score=69.99  Aligned_cols=55  Identities=35%  Similarity=0.633  Sum_probs=51.1

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~   74 (191)
                      ..++|+|+|++..+.+++|..++.|.++...+.+||.|.. +|+.|+||+|||+.+
T Consensus       428 q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li  483 (484)
T KOG3655|consen  428 QTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI  483 (484)
T ss_pred             CCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence            3579999999999999999999999999999999999988 799999999999875

>KOG3523|consensus

Probab=97.85  E-value=1.7e-06  Score=74.50  Aligned_cols=62  Identities=34%  Similarity=0.541  Sum_probs=56.9

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++.+...|.+..+++|.++.+|++.|+.+..+||..|...++|..||||.+|++.|....
T Consensus       608 cpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~~  669 (695)
T KOG3523|consen  608 CPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNPH  669 (695)
T ss_pred             CChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCHH
Confidence            34688899999999999999999999999999999999999889999999999999987654

>KOG3601|consensus

Probab=97.85  E-value=1.2e-05  Score=60.98  Aligned_cols=58  Identities=24%  Similarity=0.446  Sum_probs=52.7

Q ss_pred             CCcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854         17 LSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        17 ~~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      +......++|+|..+...++.|.+|+.+.++..++..||.|...|+.|+||++|+...
T Consensus       161 ~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~  218 (222)
T KOG3601|consen  161 PTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPS  218 (222)
T ss_pred             ccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCcccccc
Confidence            3445678899999999999999999999999999999999999999999999998654

>KOG3655|consensus

Probab=97.81  E-value=7.4e-06  Score=68.75  Aligned_cols=57  Identities=33%  Similarity=0.793  Sum_probs=52.1

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      +..+.++|||++-...+++|..++.|..+...+.|||.|... +|..|+||+|||+.+
T Consensus       427 ~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~p-dG~~glfPaNyV~li  483 (484)
T KOG3655|consen  427 PQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGP-DGEVGLFPANYVELI  483 (484)
T ss_pred             CCCccccccccccCCcccccCCccccccccccCCccccccCC-CCCcCcccccccccC
Confidence            335889999999999999999999999999999999999987 889999999999875

>KOG1843|consensus

Probab=97.79  E-value=1.3e-05  Score=66.25  Aligned_cols=55  Identities=35%  Similarity=0.723  Sum_probs=49.8

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecC--CCEEEEEeCCeeeEecCCchhc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPVTYVEQ   73 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~--~~w~~~~~~g~~G~~P~~~v~~   73 (191)
                      ...+.++++|.++..++++|++|++|.++.+.+  ..||.++.++++|+||+|||+.
T Consensus       416 ~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~  472 (473)
T KOG1843|consen  416 PNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL  472 (473)
T ss_pred             cceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence            346899999999999999999999999988866  5899999999999999999864

>KOG1843|consensus

Probab=97.57  E-value=4e-05  Score=63.33  Aligned_cols=55  Identities=31%  Similarity=0.735  Sum_probs=49.0

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECC--CCEEEEEeCCCCcEEEEcCCCeee
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCD--DGWYVGSSQRSGCFGTFPGNYVER  152 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~--~gw~~~~~~~~g~~G~vP~~~v~~  152 (191)
                      +..+.++|+|.++..++|+|++||+|.++++.+  ..||.++.  ++.+|+||++||+.
T Consensus       416 ~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~--~~~egifPanyv~~  472 (473)
T KOG1843|consen  416 PNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRG--NGYEGIFPANYVSL  472 (473)
T ss_pred             cceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhc--cccccccccceecc
Confidence            336899999999999999999999999988874  46999998  79999999999874

>KOG3875|consensus

Probab=97.56  E-value=1.4e-05  Score=63.77  Aligned_cols=56  Identities=34%  Similarity=0.568  Sum_probs=47.3

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecC-----CCEEEEEe--CCeeeEecCCchhcccC
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD-----NNWFEGRI--GTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-----~~w~~~~~--~g~~G~~P~~~v~~~~~   76 (191)
                      .++|+|||.+..+.|++|++||.+.|..+.+     ..||..+.  ++..|+||.|||+++..
T Consensus       270 ~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r  332 (362)
T KOG3875|consen  270 FARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR  332 (362)
T ss_pred             HHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence            5899999999999999999999998876633     35777754  56889999999999876

>KOG2528|consensus

Probab=97.47  E-value=8.4e-05  Score=62.11  Aligned_cols=59  Identities=34%  Similarity=0.656  Sum_probs=51.7

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..+++|||..+...+++...|+.+.+.... ..|||.+.+. .|..|.||+.||+.++.+.
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Ns-rge~GlfPa~yVeV~~~a~   63 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNS-RGERGLFPASYVEVTRLAV   63 (490)
T ss_pred             chhhhcchhhcccccccccccceeeecCcccccccccCCCc-cCccCCCcccceeeecccc
Confidence            478999999999999999999999887754 6789999987 7899999999999998433

>KOG3523|consensus

Probab=97.43  E-value=2.4e-05  Score=67.56  Aligned_cols=57  Identities=28%  Similarity=0.585  Sum_probs=52.2

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhcccCC
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~   77 (191)
                      .+.+...|.+...++|++..++++.|+++..+||+.|..  +|.+||||.+|++++...
T Consensus       610 Qv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~  668 (695)
T KOG3523|consen  610 QVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNP  668 (695)
T ss_pred             hhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCH
Confidence            467789999999999999999999999999999999965  799999999999999764

>KOG4278|consensus

Probab=97.41  E-value=0.00047  Score=60.73  Aligned_cols=56  Identities=27%  Similarity=0.462  Sum_probs=48.6

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEEeCCeeeEecCCchhcccC
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ...|+|||.+.++..|++.+|+.++|+.... +.|++.+....+||||.||..+++.
T Consensus        92 LFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGqGWVPSNyItPvNS  148 (1157)
T KOG4278|consen   92 LFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQGWVPSNYITPVNS  148 (1157)
T ss_pred             eeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCCccccccccccccc
Confidence            5799999999999999999999999999865 4688887755559999999988765

>KOG3557|consensus

Probab=97.16  E-value=0.00031  Score=61.25  Aligned_cols=60  Identities=22%  Similarity=0.398  Sum_probs=52.3

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ...+.+.|||.++...+|++.+||++.++... ..||.+++. .|+.|+||.+.+..+....
T Consensus       500 ~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d~-R~WW~~kn~-~G~~GyvP~nIL~~~~~~~  559 (721)
T KOG3557|consen  500 KKWVLVLYDFQARNSSELSVKKGEVLEVLDDG-RKWWKVKNG-HGRAGYVPSNILAPLQPEH  559 (721)
T ss_pred             ceeeeeehhhhcccchhhhhhhhhhhhhhhcc-ccceeccCc-cCCCCCcchhhhccCCCcc
Confidence            34689999999999999999999999887654 469999987 7899999999999988765

>KOG3775|consensus

Probab=97.14  E-value=0.00022  Score=58.52  Aligned_cols=59  Identities=34%  Similarity=0.615  Sum_probs=53.0

Q ss_pred             EEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      -++++.|.++..+||-|.+||-|.|-...++-|++|.+.|+|+.|+||+.|+..+....
T Consensus       265 HR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~e  323 (482)
T KOG3775|consen  265 HRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGPE  323 (482)
T ss_pred             hhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCch
Confidence            46788899999999999999999988888888999999999999999999999987543

>KOG2222|consensus

Probab=97.02  E-value=0.00014  Score=61.58  Aligned_cols=56  Identities=29%  Similarity=0.537  Sum_probs=51.1

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      .++|+.||....+++|.|.++++++++...++-.|-|..+|-+||||+.+|+.+..
T Consensus       550 rakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvellde  605 (848)
T KOG2222|consen  550 RAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLDE  605 (848)
T ss_pred             HHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHHh
Confidence            46789999999999999999999999998888889999999999999999988754

>KOG3632|consensus

Probab=97.00  E-value=0.00069  Score=61.74  Aligned_cols=58  Identities=33%  Similarity=0.635  Sum_probs=49.5

Q ss_pred             cEEEeeeccCC--------CCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         98 PYHALYNYKPQ--------NDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        98 ~~~~~~d~~~~--------~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      .+++++||++.        ...||.|+.|+||.|+... -+|++.|..  +|..|+||+|+|.++...+
T Consensus      1140 ifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~--ngr~GlIPcNmvae~~vd~ 1206 (1335)
T KOG3632|consen 1140 IFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGEL--NGRRGLIPCNMVAEQPVDN 1206 (1335)
T ss_pred             eeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccc--ccccccccccccccccCCc
Confidence            58999999875        3568999999999998865 478999998  7999999999999987655

>KOG4773|consensus

Probab=96.98  E-value=0.00012  Score=59.43  Aligned_cols=56  Identities=32%  Similarity=0.661  Sum_probs=52.0

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ...++++|.+....||.|+.|+++.++.+++.+||.|..+|.+||+|.+|+..+..
T Consensus       177 ~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~  232 (386)
T KOG4773|consen  177 RAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDD  232 (386)
T ss_pred             HHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhcc
Confidence            46789999999999999999999999999999999999999999999999998843

>KOG2222|consensus

Probab=96.95  E-value=0.00015  Score=61.37  Aligned_cols=58  Identities=28%  Similarity=0.497  Sum_probs=52.1

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      .+++++.||.....++|.|+++++|.++..-+.-.|.|..  +|-+||||+.||+.+...
T Consensus       549 krakal~df~r~dddelgfrkndiitiisekdehcwvgel--nglrgwfpakfvellder  606 (848)
T KOG2222|consen  549 KRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGEL--NGLRGWFPAKFVELLDER  606 (848)
T ss_pred             HHHHHHhhhhhccccccccccccEEEEeecCCcceeeecc--ccccccchHHHHHHHHhc
Confidence            3588999999999999999999999999988888999998  799999999999987653

>KOG2528|consensus

Probab=96.76  E-value=0.00054  Score=57.40  Aligned_cols=57  Identities=37%  Similarity=0.689  Sum_probs=50.3

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEEe-CCeeeEecCCchhcccCC
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRI-GTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~~-~g~~G~~P~~~v~~~~~~   77 (191)
                      +.+++++|..+...+++...++.+.+..... ++||.+.+ .|.+|+||+.|++.+...
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~a   62 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRLA   62 (490)
T ss_pred             chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeeccc
Confidence            4689999999999999999999999877644 79999987 799999999999988643

>KOG3557|consensus

Probab=96.54  E-value=0.0012  Score=57.83  Aligned_cols=59  Identities=20%  Similarity=0.394  Sum_probs=51.4

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~   77 (191)
                      .+..+.++|||.+....+|+..+|+++.|+.. ...||.+++ .|+.|++|.+.+..+...
T Consensus       499 ~~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~~  558 (721)
T KOG3557|consen  499 GKKWVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQPE  558 (721)
T ss_pred             cceeeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCCc
Confidence            34468889999999999999999999988875 578999988 689999999999888654

>KOG0197|consensus

Probab=96.39  E-value=0.00088  Score=57.19  Aligned_cols=56  Identities=30%  Similarity=0.653  Sum_probs=49.2

Q ss_pred             cEEEeeeccCCCCCCccCCCCCE-EEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGET-VFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~-v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .+.++++|.+....+|+|.+|+. ..+++..+..||..+....+..|++|.|||...
T Consensus        13 ~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~   69 (468)
T KOG0197|consen   13 IVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN   69 (468)
T ss_pred             eEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence            48999999999999999999999 667777778899988755788999999999974

>KOG1451|consensus

Probab=96.24  E-value=0.0078  Score=52.43  Aligned_cols=54  Identities=26%  Similarity=0.568  Sum_probs=46.7

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEE-ecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIR-RVDNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~-~~~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      .+.+++.-.+....+++|..|.++.-+. ...+||..|+++|++|++|.|||+.+
T Consensus       758 k~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~l  812 (812)
T KOG1451|consen  758 RVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEPL  812 (812)
T ss_pred             cccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCcC
Confidence            4677888888899999999999988665 55689999999999999999999864

>KOG4773|consensus

Probab=96.20  E-value=0.00051  Score=55.86  Aligned_cols=55  Identities=22%  Similarity=0.532  Sum_probs=50.4

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ...+++||.+....||.|..|+++.++.+.+.+||.|+.  .+..||+|.+|+..+.
T Consensus       177 ~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~--R~~~g~yp~sF~~~ld  231 (386)
T KOG4773|consen  177 RAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKV--RGLTGYYPDSFVKQLD  231 (386)
T ss_pred             HHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeee--ccccccccHHhhhhhc
Confidence            467889999999999999999999999999999999998  6899999999999873

>KOG4575|consensus

Probab=96.16  E-value=0.0085  Score=52.57  Aligned_cols=58  Identities=24%  Similarity=0.469  Sum_probs=44.9

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      +..++|+|.+.++..++|.|..||++.++.-.++-||.+...-....|+||.|||..+
T Consensus         8 p~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcL   65 (874)
T KOG4575|consen    8 PCMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCL   65 (874)
T ss_pred             CceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeec
Confidence            4568999999999999999999999988777655444444422456799999999443

>KOG3775|consensus

Probab=96.00  E-value=0.0036  Score=51.56  Aligned_cols=56  Identities=38%  Similarity=0.591  Sum_probs=49.8

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhcccCC
Q psy15854         22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        22 ~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~   77 (191)
                      -++++.|.+...+||.+..|+.+.|-...++.|.+|.+  +|++|.||+.|+.++...
T Consensus       265 HR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~  322 (482)
T KOG3775|consen  265 HRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGP  322 (482)
T ss_pred             hhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCc
Confidence            46788899999999999999999998888889999976  799999999999887654

>KOG0609|consensus

Probab=95.99  E-value=0.0032  Score=54.14  Aligned_cols=54  Identities=20%  Similarity=0.487  Sum_probs=44.6

Q ss_pred             ceEEEeecCCCCCC-------CCccccCCCEEEEEEecCCCEEEEEeC-----CeeeEecCCchhc
Q psy15854         20 GQARAKFNFVAQTH-------LELSLVKGELVTLIRRVDNNWFEGRIG-----TRRGIFPVTYVEQ   73 (191)
Q Consensus        20 ~~~~a~~~~~~~~~-------~els~~~g~~i~v~~~~~~~w~~~~~~-----g~~G~~P~~~v~~   73 (191)
                      ..++|+|||++..+       ..|+|.+||++.++..++..||.++.-     +.-|++|+..+++
T Consensus       215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe  280 (542)
T KOG0609|consen  215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE  280 (542)
T ss_pred             eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence            47899999998765       447999999999999999999999763     4568999876654

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=95.93  E-value=0.016  Score=38.00  Aligned_cols=45  Identities=18%  Similarity=0.269  Sum_probs=31.5

Q ss_pred             CCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854        109 NDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus       109 ~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ...+|.+.+||++.|++..+..-|.|++. .|+-|+|+.+++-...
T Consensus        29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~-~GKYGYV~~~~L~~~d   73 (89)
T PF14603_consen   29 GGKDLPIKPGEILEVIQFTDDNKVLCRNS-EGKYGYVLRSHLLPLD   73 (89)
T ss_dssp             -TTB----TT-B-EEEEESSSSEEEEEET-TTEEEEEEGGGS----
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEeCC-CCceeEEEHHHccCCC
Confidence            34689999999999999999999999998 8999999999986543

>KOG0197|consensus

Probab=95.86  E-value=0.0037  Score=53.44  Aligned_cols=56  Identities=25%  Similarity=0.562  Sum_probs=49.4

Q ss_pred             cceEEEeecCCCCCCCCccccCCCE-EEEEEecCCCEEEEEe--CCeeeEecCCchhcc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGEL-VTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~-i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   74 (191)
                      ...+.++++|.+....+|+|.+|++ ..+++..+..||..+.  .+..|++|.|||...
T Consensus        11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~   69 (468)
T KOG0197|consen   11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN   69 (468)
T ss_pred             cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence            4478999999999999999999999 7788877789999866  688999999999875

>KOG1451|consensus

Probab=95.85  E-value=0.012  Score=51.41  Aligned_cols=56  Identities=32%  Similarity=0.582  Sum_probs=46.1

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEe-EECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~-~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      ...+.+++.-.+....++++..|.++.-. ....+||..|+.  +|+.|++|.|||+.+
T Consensus       756 ~rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtL--nGktglip~nyve~l  812 (812)
T KOG1451|consen  756 SRRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTL--NGKTGLIPSNYVEPL  812 (812)
T ss_pred             cccccceeccCCCCcccccccCcceeeeecccCCCCceeeec--CCCcccCcccccCcC
Confidence            33567777777778889999999998744 466889999999  799999999999853

>KOG3725|consensus

Probab=95.85  E-value=0.003  Score=49.61  Aligned_cols=56  Identities=32%  Similarity=0.594  Sum_probs=49.1

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecC--CCEEEEEeCCeeeEecCCchhcc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~--~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      .+++++++||++....+|++-.++++.|....+  ..|.-+..+++.|-+|..|++.+
T Consensus       317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL  374 (375)
T ss_pred             ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence            446899999999999999999999998877644  57998999999999999999865

>KOG3725|consensus

Probab=95.63  E-value=0.0043  Score=48.71  Aligned_cols=56  Identities=27%  Similarity=0.427  Sum_probs=47.8

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEEC--CCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~--~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      ..+++++|||++-...+|++-.+++|.|....  +..|..+..  .++.|-+|..|++.+
T Consensus       317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgEr--GnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGER--GNKKGKVPVTYLELL  374 (375)
T ss_pred             ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhh--cCCCCCcchhHHHhc
Confidence            45799999999999999999999999887765  567999987  688999999998754

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=95.40  E-value=0.032  Score=36.61  Aligned_cols=44  Identities=18%  Similarity=0.183  Sum_probs=30.4

Q ss_pred             CCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhccc
Q psy15854         32 THLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        32 ~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~   75 (191)
                      +.-+|.+.+||.+.|++..+..-|.|++ .|+-|+|+.+++-+..
T Consensus        29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~d   73 (89)
T PF14603_consen   29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPLD   73 (89)
T ss_dssp             -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS----
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCCC
Confidence            4577999999999999999999999998 7999999999886543

>KOG3771|consensus

Probab=95.15  E-value=0.016  Score=49.14  Aligned_cols=52  Identities=19%  Similarity=0.142  Sum_probs=41.3

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEEeCCeeeEecCCch
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYV   71 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v   71 (191)
                      -.+.++++|..+..++|+|..|+.|.|+...+ ..||.|+.-|..+-++.+|+
T Consensus       401 ~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~  453 (460)
T KOG3771|consen  401 YKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLF  453 (460)
T ss_pred             cceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhcccccccce
Confidence            35789999999999999999999999998655 57888887665444444444

>KOG4429|consensus

Probab=95.13  E-value=0.0064  Score=48.61  Aligned_cols=54  Identities=28%  Similarity=0.378  Sum_probs=48.4

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .|.+.|.|+....++|...+|+++.+-+....|||.|+.  .|..|-||+.+++..
T Consensus       365 lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl--~gd~~hf~Aa~iEea  418 (421)
T KOG4429|consen  365 LCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRL--LGDFEHFHAAEIEEA  418 (421)
T ss_pred             HhhhhhccccccccccCCcccceeeecCcccCCCceeee--ccccCCCcHHHHHHh
Confidence            488999999999999999999999888888899999999  688899999888753

>KOG0609|consensus

Probab=95.08  E-value=0.0075  Score=51.95  Aligned_cols=60  Identities=23%  Similarity=0.532  Sum_probs=47.4

Q ss_pred             CccEEEeeeccCCCCC-------CccCCCCCEEEEeEECCCCEEEEEeCC---CCcEEEEcCCCeeeccc
Q psy15854         96 PVPYHALYNYKPQNDD-------ELELREGETVFVMEKCDDGWYVGSSQR---SGCFGTFPGNYVERASL  155 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~-------eLs~~~ge~v~v~~~~~~gw~~~~~~~---~g~~G~vP~~~v~~i~~  155 (191)
                      ..++++++||.+....       .|+|.+||++.|+...+..||.++.-.   .+..|.+|+..++.-..
T Consensus       214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qerr~  283 (542)
T KOG0609|consen  214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQERRV  283 (542)
T ss_pred             eeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHHHH
Confidence            3578999999987533       599999999999999999999998742   25679999877665443

>KOG4575|consensus

Probab=94.77  E-value=0.045  Score=48.21  Aligned_cols=54  Identities=22%  Similarity=0.450  Sum_probs=44.8

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhcc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   74 (191)
                      .++|+|.+.++..++|.|..||++.++...++-||-+.+  ....|+||.|+|.-+
T Consensus        10 ~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcL   65 (874)
T KOG4575|consen   10 MVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCL   65 (874)
T ss_pred             eEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeec
Confidence            578999999999999999999999999886655665554  457899999999544

>KOG4429|consensus

Probab=94.44  E-value=0.033  Score=44.69  Aligned_cols=54  Identities=17%  Similarity=0.118  Sum_probs=48.7

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      .|.++|+|.....++|....|++..+-+....+||.|+..|.-|-||+.+++++
T Consensus       365 lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea  418 (421)
T KOG4429|consen  365 LCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA  418 (421)
T ss_pred             HhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence            478899999999999999999998888887889999999999999999998765

>KOG0199|consensus

Probab=94.33  E-value=0.055  Score=48.74  Aligned_cols=54  Identities=26%  Similarity=0.388  Sum_probs=43.7

Q ss_pred             EEEeeeccCCCCCCccCCCCCEEEEeEECC-CCEEEEEeCCCCcEEEEcCCCeee
Q psy15854         99 YHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVER  152 (191)
Q Consensus        99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~-~gw~~~~~~~~g~~G~vP~~~v~~  152 (191)
                      ..+..+++..+.+.|.+++||.|.|++... +-||.|.+.++++.|-||.+.|..
T Consensus       377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt~  431 (1039)
T KOG0199|consen  377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVTA  431 (1039)
T ss_pred             ceeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceeee
Confidence            344455556778899999999999988765 349999988899999999998873

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=94.32  E-value=0.1  Score=30.94  Aligned_cols=37  Identities=32%  Similarity=0.622  Sum_probs=29.2

Q ss_pred             cCCCCCEEEEeEECCCC-EEEEEeCCCCcEEEEcCCCee
Q psy15854        114 ELREGETVFVMEKCDDG-WYVGSSQRSGCFGTFPGNYVE  151 (191)
Q Consensus       114 s~~~ge~v~v~~~~~~g-w~~~~~~~~g~~G~vP~~~v~  151 (191)
                      .+..|+.+.++.....+ |+..+.. ++..||+...||+
T Consensus        18 ~l~~g~~v~v~~~~~~~~W~~V~~~-~g~~GwV~~~~l~   55 (55)
T PF08239_consen   18 QLPKGEKVTVLGESGDGNWYKVRTY-DGKTGWVSSSYLS   55 (55)
T ss_dssp             EEETTSEEEEEEEETT--EEEEEEE-TTEEEEEEGGCEE
T ss_pred             EEeCCCEEEEEEEcCCcEEEEEECc-CCcEEEEEccccC
Confidence            46789999998887655 9999444 7889999999874

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>KOG3771|consensus

Probab=93.73  E-value=0.03  Score=47.55  Aligned_cols=52  Identities=21%  Similarity=0.245  Sum_probs=40.4

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCee
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVE  151 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~  151 (191)
                      ++.++++|.+...++|+|..|+.|.++... ...||.|+.  .|..+-++.+|+.
T Consensus       402 ~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~--mg~ke~~~~~~~~  454 (460)
T KOG3771|consen  402 KVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWL--MGVKESDWNGLFP  454 (460)
T ss_pred             ceeccccccccccccccccCCCEEEEecCCCccchhhHHH--hhhccccccccee
Confidence            588999999999999999999999998865 346888887  4554444455543

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=93.45  E-value=0.2  Score=29.64  Aligned_cols=36  Identities=25%  Similarity=0.544  Sum_probs=29.0

Q ss_pred             cccCCCEEEEEEecCCC-EEEE-EeCCeeeEecCCchh
Q psy15854         37 SLVKGELVTLIRRVDNN-WFEG-RIGTRRGIFPVTYVE   72 (191)
Q Consensus        37 s~~~g~~i~v~~~~~~~-w~~~-~~~g~~G~~P~~~v~   72 (191)
                      .+..|+.+.++...... |++. ...|..||+...|++
T Consensus        18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence            56789999999887655 9999 558999999988864

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=93.10  E-value=0.25  Score=29.95  Aligned_cols=38  Identities=29%  Similarity=0.378  Sum_probs=30.0

Q ss_pred             ccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCee
Q psy15854        113 LELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE  151 (191)
Q Consensus       113 Ls~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~  151 (191)
                      ..+..|+.+.++.....+|+..+.. +|..||++..++.
T Consensus        25 ~~l~~g~~v~i~~~~~~~W~~v~~~-~g~~Gwi~~~~~~   62 (63)
T smart00287       25 GTLKKGDKVKVLGVDGQDWAKITYG-SGQRGYVPGYVVN   62 (63)
T ss_pred             EEecCCCEEEEEEccCCceEEEEcC-CCCEEEEEeeeec
Confidence            3477899999988765589999874 5899999776653

>KOG3565|consensus

Probab=91.86  E-value=0.06  Score=48.22  Aligned_cols=59  Identities=22%  Similarity=0.478  Sum_probs=50.3

Q ss_pred             CCCcceEEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEE--eCCeeeEecCCchhcc
Q psy15854         16 KLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGR--IGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        16 ~~~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~--~~g~~G~~P~~~v~~~   74 (191)
                      .+..+.+.+++.|.++.++++++..|+++.+++.+. .+|-+++  ..+..|.+|.+|++..
T Consensus       575 ~p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~  636 (640)
T KOG3565|consen  575 SPPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVT  636 (640)
T ss_pred             CCCccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccc
Confidence            445667899999999999999999999999888755 5788887  5788999999998765

>PRK10884 SH3 domain-containing protein; Provisional

Probab=91.39  E-value=0.31  Score=37.54  Aligned_cols=43  Identities=14%  Similarity=0.099  Sum_probs=35.3

Q ss_pred             ccCCCCCEEEEeEECC-CCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854        113 LELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus       113 Ls~~~ge~v~v~~~~~-~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      -.+..|+.+.+++..+ ++|...+.. +|.+|||+..|+......
T Consensus        48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~-~G~~GWV~~~~Ls~~p~~   91 (206)
T PRK10884         48 GTLNAGEEVTLLQVNANTNYAQIRDS-KGRTAWIPLKQLSTTPSL   91 (206)
T ss_pred             EEEcCCCEEEEEEEcCCCCEEEEEeC-CCCEEeEEHHHhcCCccH
Confidence            4578999999998775 679999875 789999999998876543

>KOG3565|consensus

Probab=91.09  E-value=0.055  Score=48.47  Aligned_cols=58  Identities=28%  Similarity=0.543  Sum_probs=49.4

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ..+.+++.|.+...+++++..|+++.+++.. ++||=.++...++..|++|.+|++...
T Consensus       579 ~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~  637 (640)
T KOG3565|consen  579 RTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE  637 (640)
T ss_pred             cceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence            3588899999999999999999999988865 678888884347899999999998764

>KOG0199|consensus

Probab=90.54  E-value=0.32  Score=44.12  Aligned_cols=51  Identities=24%  Similarity=0.296  Sum_probs=41.9

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEEe--CCeeeEecCCchh
Q psy15854         22 ARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRI--GTRRGIFPVTYVE   72 (191)
Q Consensus        22 ~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~~--~g~~G~~P~~~v~   72 (191)
                      ..+..+|+....+.|.|.+||.|.|++... +.||.|.+  +++.|.||.+-|.
T Consensus       377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt  430 (1039)
T KOG0199|consen  377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT  430 (1039)
T ss_pred             ceeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence            445556667888899999999999999765 57999976  6799999998876

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=90.29  E-value=0.66  Score=28.05  Aligned_cols=35  Identities=29%  Similarity=0.472  Sum_probs=28.3

Q ss_pred             cccCCCEEEEEEecCCCEEEEEeC-CeeeEecCCch
Q psy15854         37 SLVKGELVTLIRRVDNNWFEGRIG-TRRGIFPVTYV   71 (191)
Q Consensus        37 s~~~g~~i~v~~~~~~~w~~~~~~-g~~G~~P~~~v   71 (191)
                      .+..|+.+.++.....+|++.+.. |..||++..++
T Consensus        26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~   61 (63)
T smart00287       26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV   61 (63)
T ss_pred             EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence            577899999988755589999885 99999976554

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=89.68  E-value=0.97  Score=26.75  Aligned_cols=35  Identities=23%  Similarity=0.349  Sum_probs=28.1

Q ss_pred             ccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCch
Q psy15854         36 LSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV   71 (191)
Q Consensus        36 ls~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v   71 (191)
                      ..+.+|..+.+.. ...+|++.+.+|..||+..+.+
T Consensus        19 ~~l~~g~~v~v~~-~~~~W~~V~~~g~~GWv~~~~l   53 (55)
T PF06347_consen   19 ARLEPGVPVRVIE-CRGGWCKVRADGRTGWVHKSLL   53 (55)
T ss_pred             EEECCCCEEEEEE-ccCCeEEEEECCeEEeEEeeec
Confidence            4567788887774 4779999999999999987654

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=88.91  E-value=1.2  Score=26.28  Aligned_cols=35  Identities=26%  Similarity=0.356  Sum_probs=27.8

Q ss_pred             ccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCe
Q psy15854        113 LELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV  150 (191)
Q Consensus       113 Ls~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v  150 (191)
                      ..+..|..+.+++. .++|+..+.  +|..||+....|
T Consensus        19 ~~l~~g~~v~v~~~-~~~W~~V~~--~g~~GWv~~~~l   53 (55)
T PF06347_consen   19 ARLEPGVPVRVIEC-RGGWCKVRA--DGRTGWVHKSLL   53 (55)
T ss_pred             EEECCCCEEEEEEc-cCCeEEEEE--CCeEEeEEeeec
Confidence            56788888888744 567999994  899999987765

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>KOG3812|consensus

Probab=88.21  E-value=0.2  Score=41.12  Aligned_cols=49  Identities=16%  Similarity=0.446  Sum_probs=36.9

Q ss_pred             EEEeeeccCCC-------CCCccCCCCCEEEEeEECCCCEEEEEeCCCC-cEEEEcC
Q psy15854         99 YHALYNYKPQN-------DDELELREGETVFVMEKCDDGWYVGSSQRSG-CFGTFPG  147 (191)
Q Consensus        99 ~~~~~d~~~~~-------~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g-~~G~vP~  147 (191)
                      +++..+|.+.-       ...++|+..|.+.|-++-+..||.|+.-+.| ..||+|.
T Consensus        61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs  117 (475)
T KOG3812|consen   61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS  117 (475)
T ss_pred             EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence            45556666542       2358899999999988888999999874344 5799997

>PRK10884 SH3 domain-containing protein; Provisional

Probab=87.94  E-value=0.93  Score=34.95  Aligned_cols=38  Identities=26%  Similarity=0.317  Sum_probs=32.1

Q ss_pred             cccCCCEEEEEEecC-CCEEEEEe-CCeeeEecCCchhcc
Q psy15854         37 SLVKGELVTLIRRVD-NNWFEGRI-GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        37 s~~~g~~i~v~~~~~-~~w~~~~~-~g~~G~~P~~~v~~~   74 (191)
                      .+..|+.+.++...+ .+|.+.+. +|++||++..|+...
T Consensus        49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~   88 (206)
T PRK10884         49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT   88 (206)
T ss_pred             EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence            677899999998765 58999986 789999999998754

>KOG3705|consensus

Probab=85.50  E-value=0.92  Score=38.30  Aligned_cols=55  Identities=24%  Similarity=0.347  Sum_probs=44.7

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeee
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER  152 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~  152 (191)
                      ..+++++..++...++.++.||.|.|-...=+|.-.|++...++.|.||+.-|++
T Consensus       511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre  565 (580)
T KOG3705|consen  511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE  565 (580)
T ss_pred             ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence            4788999999999999999999998866554556667776678999999876665

>COG3103 SH3 domain protein [Signal transduction mechanisms]

Probab=82.53  E-value=3.8  Score=31.54  Aligned_cols=102  Identities=19%  Similarity=0.284  Sum_probs=64.7

Q ss_pred             cccCCCEEEEEEecCC-CEEEEEe-CCeeeEecCCchhcccCCCCCCCCCCccccccCCCCCccEEEeeeccCCCCCCcc
Q psy15854         37 SLVKGELVTLIRRVDN-NWFEGRI-GTRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELE  114 (191)
Q Consensus        37 s~~~g~~i~v~~~~~~-~w~~~~~-~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~eLs  114 (191)
                      +++.|+.+.|+..... +|.+.+. .|+.|||+..++........    .       ......+++..-+-..+  -.-.
T Consensus        49 ~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e~s~~~----~-------~p~~~~nVr~~t~t~~~--v~g~  115 (205)
T COG3103          49 SIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSEPSSNE----R-------VPDLELNVRELTKTLSN--VDGT  115 (205)
T ss_pred             EecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhccccccce----e-------cCchhhhhhhcccchhh--hhhh
Confidence            6889999999998664 7999887 78999999887765432200    0       00000011111111111  1234


Q ss_pred             CCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854        115 LREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus       115 ~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      ++.|..+++......+|.....  .++.|++-..|+..-
T Consensus       116 ~~~~t~~~~~sk~~~~w~~~~~--~~k~~~vs~q~~~~~  152 (205)
T COG3103         116 WKQGTAVMQISKTQNNWYIITL--KGKNGYVSGQLVTAQ  152 (205)
T ss_pred             hhcCcEEEEEeeccccchhhhh--hcccchhhhhheecc
Confidence            6778888887777788888887  578888877776653

>KOG3812|consensus

Probab=82.33  E-value=0.52  Score=38.85  Aligned_cols=47  Identities=19%  Similarity=0.556  Sum_probs=36.8

Q ss_pred             EEEeecCCCCCCCC-------ccccCCCEEEEEEecCCCEEEEEe---CCeeeEecC
Q psy15854         22 ARAKFNFVAQTHLE-------LSLVKGELVTLIRRVDNNWFEGRI---GTRRGIFPV   68 (191)
Q Consensus        22 ~~a~~~~~~~~~~e-------ls~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~   68 (191)
                      +++..+|.+.-+++       ++|...+++.+.++.+.+||-|+.   +..-||+|.
T Consensus        61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs  117 (475)
T KOG3812|consen   61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS  117 (475)
T ss_pred             EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence            45556787765544       688899999999999999999976   456799996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	191
2lj1_A	64	The Third Sh3 Domain Of R85fl With Ataxin-7 Prr Len		2e-19
2lj0_A	65	The Third Sh3 Domain Of R85fl Length = 65		2e-19
2ct3_A	70	Solution Structure Of The Sh3 Domain Of The Vinexin		2e-18
2o2w_A	67	Extending Powder Diffraction To Proteins: Structure		1e-12
2ecz_A	70	Solution Structure Of The Sh3 Domain Of Sorbin And		4e-12
2dl3_A	68	Solution Structure Of The First Sh3 Domain Of Human		2e-10
2dl3_A	68	Solution Structure Of The First Sh3 Domain Of Human		3e-04
2yup_A	90	Solution Structure Of The Second Sh3 Domain Of Huma		7e-10
1wlp_B	138	Solution Structure Of The P22phox-P47phox Complex L		1e-09
1ov3_A	138	Structure Of The P22phox-P47phox Complex Length = 1		1e-09
1uec_A	193	Crystal Structure Of Autoinhibited Form Of Tandem S		2e-09
1ng2_A	193	Structure Of Autoinhibited P47phox Length = 193		3e-09
2dlm_A	68	Solution Structure Of The First Sh3 Domain Of Human		3e-09
2dlm_A	68	Solution Structure Of The First Sh3 Domain Of Human		7e-04
4f14_A	64	Structure Of The Sh3 Domain Of Human Nebulette In C		5e-09
2e5k_A	94	Solution Structure Of Sh3 Domain In Suppressor Of T		5e-09
2nwm_A	65	Solution Structure Of The First Sh3 Domain Of Human		6e-09
2nwm_A	65	Solution Structure Of The First Sh3 Domain Of Human		4e-04
2ed0_A	78	Solution Structure Of The Sh3 Domain Of Abl Interac		1e-08
3i35_A	60	Human Sh3 Domain Of Protein Lasp1 Length = 60		2e-08
1udl_A	98	The Solution Structure Of The Fifth Sh3 Domain Of I		4e-08
2js0_A	61	Solution Structure Of Second Sh3 Domain Of Adaptor		4e-08
3sem_A	60	Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Le		7e-08
1k76_A	62	Solution Structure Of The C-Terminal Sem-5 Sh3 Doma		7e-08
1sem_A	58	Structural Determinants Of Peptide-Binding Orientat		8e-08
2cub_A	88	Solution Structure Of The Sh3 Domain Of The Human C		1e-07
1ark_A	60	Sh3 Domain From Human Nebulin, Nmr, 15 Structures L		2e-07
2dbm_A	73	Solution Structures Of The Sh3 Domain Of Human Sh3-		4e-07
2dbm_A	73	Solution Structures Of The Sh3 Domain Of Human Sh3-		5e-05
2bz8_A	58	N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Pepti		6e-07
2bz8_A	58	N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Pepti		6e-04
3iql_A	71	Crystal Structure Of The Rat Endophilin-A1 Sh3 Doma		7e-07
3iql_A	71	Crystal Structure Of The Rat Endophilin-A1 Sh3 Doma		4e-05
2frw_A	57	Solution Structure Of The Second Sh3 Domain Of Huma		7e-07
3c0c_A	73	X-Ray Crystal Structure Of The Rat Endophilin A2 Sh		7e-07
3c0c_A	73	X-Ray Crystal Structure Of The Rat Endophilin A2 Sh		7e-05
2ew3_A	68	Solution Structure Of The Sh3 Domain Of Human Sh3gl		9e-07
2ew3_A	68	Solution Structure Of The Sh3 Domain Of Human Sh3gl		6e-04
2krn_A	60	High Resolution Structure Of The Second Sh3 Domain		1e-06
2dil_A	69	Solution Structure Of The Sh3 Domain Of The Human P		2e-06
2dyb_A	341	The Crystal Structure Of Human P40(Phox) Length = 3		3e-06
1w6x_A	60	Sh3 Domain Of P40phox, Component Of The Nadph Oxida		3e-06
2yun_A	79	Solution Structure Of The Sh3 Domain Of Human Nostr		4e-06
1z9q_A	79	Solution Structure Of Sh3 Domain Of P40phox Length		4e-06
2dl8_A	72	Solution Structure Of The Sh3 Domain Of Human Slit-		5e-06
1oot_A	60	Crystal Structure Of The Sh3 Domain From A S. Cerev		5e-06
3u23_A	65	Atomic Resolution Crystal Structure Of The 2nd Sh3		5e-06
2dl4_A	68	Solution Structure Of The First Sh3 Domain Of Stac		6e-06
2fei_A	65	Solution Structure Of The Second Sh3 Domain Of Huma		6e-06
1ynz_A	58	Sh3 Domain Of Yeast Pin3 Length = 58		6e-06
3jv3_A	283	Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l		7e-06
2dm1_A	73	Solution Structure Of The Second Sh3 Domain Of Huma		7e-06
2vwf_A	58	Grb2 Sh3c (2) Length = 58		1e-05
2lcs_A	73	Yeast Nbp2p Sh3 Domain In Complex With A Peptide Fr		1e-05
3gf9_A	295	Crystal Structure Of Human Intersectin 2 Rhogef Dom		1e-05
3gf9_A	295	Crystal Structure Of Human Intersectin 2 Rhogef Dom		3e-05
1gri_A	217	Grb2 Length = 217		1e-05
2o2o_A	92	Solution Structure Of Domain B From Human Cin85 Pro		1e-05
1ujy_A	76	Solution Structure Of Sh3 Domain In RacCDC42 GUANIN		1e-05
1wi7_A	68	Solution Structure Of The Sh3 Domain Of Sh3-Domain		2e-05
2k9g_A	73	Solution Structure Of The Third Sh3 Domain Of The C		2e-05
2k9g_A	73	Solution Structure Of The Third Sh3 Domain Of The C		9e-04
1yn8_A	59	Sh3 Domain Of Yeast Nbp2 Length = 59		2e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		2e-05
1zsg_A	65	Beta Pix-Sh3 Complexed With An Atypical Peptide Fro		2e-05
2da9_A	70	Solution Structure Of The Third Sh3 Domain Of Sh3-D		2e-05
1uff_A	93	Solution Structure Of The First Sh3 Domain Of Human		2e-05
4e6r_A	58	Crystal Structure Of A Cytoplasmic Protein Nck2 (Nc		3e-05
2djq_A	68	The Solution Structure Of The First Sh3 Domain Of M		3e-05
1x2k_A	68	Solution Structure Of The Sh3 Domain Of Human Osteo		3e-05
2kbt_A	142	Attachment Of An Nmr-Invisible Solubility Enhanceme		3e-05
2cuc_A	70	Solution Structure Of The Sh3 Domain Of The Mouse H		3e-05
2ydl_A	69	Crystal Structure Of Sh3c From Cin85 Length = 69		3e-05
2ydl_A	69	Crystal Structure Of Sh3c From Cin85 Length = 69		9e-04
1zlm_A	58	Crystal Structure Of The Sh3 Domain Of Human Osteoc		4e-05
3ulr_B	65	Lysozyme Contamination Facilitates Crystallization		4e-05
2k6d_A	62	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		4e-05
2k6d_A	62	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		3e-04
2d1x_A	66	The Crystal Structure Of The Cortactin-Sh3 Domain A		4e-05
1jo8_A	58	Structural Analysis Of The Yeast Actin Binding Prot		5e-05
2ak5_A	64	Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length		5e-05
1gcq_A	61	Crystal Structure Of Vav And Grb2 Sh3 Domains Lengt		5e-05
2a08_A	60	Structure Of The Yeast Yhh6 Sh3 Domain Length = 60		5e-05
1io6_A	59	Growth Factor Receptor-Bound Protein 2 (Grb2) C-Ter		5e-05
2vvk_A	56	Grb2 Sh3c (1) Length = 56		5e-05
2drk_A	59	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		6e-05
1x2q_A	88	Solution Structure Of The Sh3 Domain Of The Signal		6e-05
2k3b_A	62	Seeing The Invisible: Structures Of Excited Protein		6e-05
2df6_A	59	Crystal Structure Of The Sh3 Domain Of Betapix In C		7e-05
2drm_A	58	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		7e-05
1x69_A	79	Solution Structures Of The Sh3 Domain Of Human Src		7e-05
2rpn_A	59	A Crucial Role For High Intrinsic Specificity In Th		7e-05
1qly_A	58	Nmr Study Of The Sh3 Domain From Bruton's Tyrosine		7e-05
2esw_A	61	Atomic Structure Of The N-Terminal Sh3 Domain Of Mo		8e-05
1aww_A	67	Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42 S		8e-05
1x43_A	81	Solution Structure Of The Sh3 Domain Of Endophilin		1e-04
2fpf_A	71	Crystal Structure Of The Ib1 Sh3 Dimer At Low Resol		2e-04
2fpd_A	62	Sad Structure Determination: Crystal Structure Of T		2e-04
2rf0_A	89	Crystal Structure Of Human Mixed Lineage Kinase Map		3e-04
1uj0_A	62	Crystal Structure Of Stam2 Sh3 Domain In Complex Wi		3e-04
2d0n_A	59	Crystal Structure Of The C-Terminal Sh3 Domain Of T		4e-04
2d0n_A	59	Crystal Structure Of The C-Terminal Sh3 Domain Of T		6e-04
1uti_A	58	MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE L		5e-04
1oeb_A	62	MonaGADS SH3C DOMAIN Length = 62		5e-04
1h3h_A	60	Structural Basis For Specific Recognition Of An Rxx		6e-04
2m0y_A	74	Solution Structure Of The Sh3 Domain Of Dock180 Len		6e-04
4gbq_A	74	Solution Nmr Structure Of The Grb2 N-Terminal Sh3 D		7e-04
2lqn_A	303	Solution Structure Of Crkl Length = 303		7e-04
2lqw_A	303	Solution Structure Of Phosphorylated Crkl Length =		8e-04
3haj_A	486	Crystal Structure Of Human Pacsin2 F-Bar Domain (P2		9e-04

>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr Length = 64

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 49/60 (81%)
Query: 92  THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           T  D   Y ALY+Y PQNDDELELR+G+ V VMEKCDDGW+VG+S+R+  FGTFPGNYV+
Sbjct: 2   TSQDLFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61

>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl Length = 65

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 49/60 (81%)
Query: 92  THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           T  D   Y ALY+Y PQNDDELELR+G+ V VMEKCDDGW+VG+S+R+  FGTFPGNYV+
Sbjct: 2   TSQDLFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61

>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin Protein Length = 70

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 48/59 (81%)
Query: 92  THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           + S   PY A+Y Y+PQN+DELELREG+ V VM++CDDGW+VG S+R+  FGTFPGNYV
Sbjct: 3   SGSSGTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 61

>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure Solution Of The Second Sh3 Domain From Ponsin Length = 67

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 45/59 (76%), Gaps = 2/59 (3%)
Query: 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GT-RRGIFPVTYVEQQSR 76
          G+A AKFNF   T +E+S  KGE +TL+R+VD NW+EGRI GT R+GIFP+TYV+   R
Sbjct: 7  GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR 65

>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3 Domain-Containing Protein 1 Length = 70

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 43/54 (79%), Gaps = 2/54 (3%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GT-RRGIFPVTYVE 72
          +A AKFNF   T +E+S  KGE +TL+R+VD NW+EGRI GT R+GIFP+TYV+
Sbjct: 9  EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 62

>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin And Sh3 Domain-Containing Protein 1 Length = 68

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 37/51 (72%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          ARAKF+F AQT  EL L KG++V + +++D NW+EG    R GIFP TY+E
Sbjct: 10 ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIE 60

>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin And Sh3 Domain-Containing Protein 1 Length = 68

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 98  PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           P  A +++K Q   EL L++G+ V++ ++ D  WY G  +  G  G FP  Y+E  S
Sbjct: 9   PARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEG--EHHGRVGIFPRTYIELLS 63

>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Vinexin Length = 90

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Query: 17 LSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GT-RRGIFPVTYVE 72
          L  G+A A++ F     +ELS  KGE + LIR+V+ NW+EGRI GT R+GIFP +YV+
Sbjct: 15 LEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQ 72

>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex Length = 138

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 23  RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGA 82
           RA  ++   +  E++L  G++V ++ + ++ W+  ++  +RG  P +++E      P  +
Sbjct: 14  RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE------PLDS 67
Query: 83  PVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCF 142
           P D+T   + +    PY A+  Y     DE+ L EGE V V+ K  DGW+V   ++    
Sbjct: 68  P-DETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWV--IRKDDVT 124
Query: 143 GTFPGNYVERA 153
           G FP  Y++++
Sbjct: 125 GYFPSMYLQKS 135

>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex Length = 138

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 23  RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGA 82
           RA  ++   +  E++L  G++V ++ + ++ W+  ++  +RG  P +++E      P  +
Sbjct: 15  RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE------PLDS 68
Query: 83  PVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCF 142
           P D+T   + +    PY A+  Y     DE+ L EGE V V+ K  DGW+V   ++    
Sbjct: 69  P-DETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWV--IRKDDVT 125
Query: 143 GTFPGNYVERA 153
           G FP  Y++++
Sbjct: 126 GYFPSMYLQKS 136

>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3 Domain Of P47phox Length = 193

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 23  RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGA 82
           RA  ++   +  E++L  G++V ++ + ++ W+  ++  +RG  P +++E      P  +
Sbjct: 15  RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE------PLDS 68
Query: 83  PVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCF 142
           P D+T   + +    PY A+  Y     DE+ L EGE V V+ K  DGW+V   ++    
Sbjct: 69  P-DETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWV--IRKDDVT 125
Query: 143 GTFPGNYVERA 153
           G FP  Y++++
Sbjct: 126 GYFPSMYLQKS 136

>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox Length = 193

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 23  RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGA 82
           RA  ++   +  E++L  G++V ++ + ++ W+  ++  +RG  P +++E      P  +
Sbjct: 15  RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE------PLDS 68
Query: 83  PVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCF 142
           P D+T   + +    PY A+  Y     DE+ L EGE V V+ K  DGW+V   ++    
Sbjct: 69  P-DETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWV--IRKDDVT 125
Query: 143 GTFPGNYVERA 153
           G FP  Y++++
Sbjct: 126 GYFPSMYLQKS 136

>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin Length = 68

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          AR KF+F AQ+  EL+L KG++V + + VD NW EG    R GIFP  YVE
Sbjct: 10 ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 60

>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin Length = 68

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 103 YNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ++++ Q+  EL L++G+ V++ ++ D  W  G  +  G  G FP NYVE
Sbjct: 14  FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG--EHHGRLGIFPANYVE 60

>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex With A Peptide Of Xirp2 Length = 64

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           Y A+Y+Y  Q++DE+  R+G+ +  ++  DDGW  G+ QR+G  G  P NY+E
Sbjct: 9   YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61

>pdb|2E5K|A Chain A, Solution Structure Of Sh3 Domain In Suppressor Of T-Cell Receptor Signaling 1 Length = 94

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 100 HALYNYKPQNDDELELREGETVFV--MEKCD--DGWYVGSSQRSGCFGTFPGNYVERASL 155
             +Y Y PQNDDELEL  G+ +F+  ME+    +GW  G+S  +GC G  P NY+ +A  
Sbjct: 20  QVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADE 79
Query: 156 ALRWVENASK 165
              W+ + S 
Sbjct: 80  CSTWIFHGSS 89

>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin And Its Interaction With The Peptides From Vinculin Length = 65

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          AR KF+F AQ+  EL+L KG++V + + VD NW EG    R GIFP  YVE
Sbjct: 4  ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 54

>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin And Its Interaction With The Peptides From Vinculin Length = 65

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 103 YNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL 155
           ++++ Q+  EL L++G+ V++ ++ D  W  G  +  G  G FP NYVE   L
Sbjct: 8   FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG--EHHGRLGIFPANYVEVLPL 58

>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2 (Abelson Interactor 2) Length = 78

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           A+Y+Y    +DEL  +EG  ++V++K DDGWY G    +G  G FPGNYVE  S
Sbjct: 22  AIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEG--VMNGVTGLFPGNYVESIS 73

>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1 Length = 60

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 36/53 (67%)
Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           Y A+Y+Y   ++DE+  ++G+T+  +++ DDGW  G+ +R+G  G  P NYVE
Sbjct: 6   YRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVE 58

>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of Intersectin 2 (Kiaa1256) Length = 98

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 18/97 (18%)
Query: 62  RRGIFPVTYVE----QQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELRE 117
           ++G FP ++V+       RATP+  PV Q +            A+Y+Y   N+DEL   +
Sbjct: 8   QKGWFPASHVKLLGPSSERATPAFHPVCQVI------------AMYDYAANNEDELSFSK 55
Query: 118 GETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           G+ + VM K D  W+ G  + +G  G FP NYV+  +
Sbjct: 56  GQLINVMNKDDPDWWQG--EINGVTGLFPSNYVKMTT 90

>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck Length = 61

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 97  VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           +P +  +NY  + +DEL L +G  V VMEKC DGW+ GS   +G  G FP NYV
Sbjct: 5   MPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSY--NGQVGWFPSNYV 56

>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Length = 60

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
           +A F+F  Q   EL+  +G+++TLI + D NW+EG++  RRGIFP  YV
Sbjct: 5  VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54

>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain (Minimized Average Structure) Length = 62

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
           +A F+F  Q   EL+  +G+++TLI + D NW+EG++  RRGIFP  YV
Sbjct: 7  VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 56

>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And Of Sequence Specificity In Sh3 Domains Length = 58

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
           +A F+F  Q   EL+  +G+++TLI + D NW+EG++  RRGIFP  YV
Sbjct: 5  VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54

>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Cytoplasmic Protein Nck1 Length = 88

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 97  VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           +P +  +NY  + +DEL L +G  V VMEKC DGW+ GS   +G  G FP NYV
Sbjct: 18  MPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGS--YNGQVGWFPSNYV 69

>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures Length = 60

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           + A+Y+Y   + DE+  ++G+ +  ++  D+GW  G+ QR+G  G  P NYVE
Sbjct: 6   FRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVE 58

>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3- Containing Grb2-Like Protein 2 Length = 73

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           RA ++F  +   EL   +G+++TL  ++D NW+EG +    G FP+ YVE
Sbjct: 10 CRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVE 60

>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3- Containing Grb2-Like Protein 2 Length = 73

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+++P+N+ EL  +EG+ + +  + D+ WY G     G  G FP NYVE
Sbjct: 12  ALYDFEPENEGELGFKEGDIITLTNQIDENWYEG--MLHGHSGFFPINYVE 60

>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide Length = 58

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
          +A  +F++ AQ   EL++  GE++T IR+ D  W+EG+I  RRG+FP  +V +
Sbjct: 3  EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVRE 55

>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide Length = 58

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 103 YNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           ++Y+ Q+DDEL +  GE +  + K D GW+ G  Q +G  G FP N+V
Sbjct: 8   FDYQAQHDDELTISVGEIITNIRKEDGGWWEG--QINGRRGLFPDNFV 53

>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain Length = 71

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           RA ++F  +   EL   +G+++TL  ++D NW+EG +  + G FP+ YVE
Sbjct: 14 CRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVE 64

>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain Length = 71

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           SD     ALY+++P+N+ EL  +EG+ + +  + D+ WY G     G  G FP NYVE
Sbjct: 9   SDQPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEG--MLHGQSGFFPINYVE 64

>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Adaptor Protein Nck2 Length = 57

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 97  VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           +P    + Y  + +DEL L +G  V VMEKC DGW+ GS   +G  G FP NYV
Sbjct: 1   IPAFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGS--YNGQIGWFPSNYV 52

>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3 Domain Length = 73

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 17 LSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          L +   +A ++F  +   EL   +G+L+TL  ++D NW+EG +  + G FP++YV+
Sbjct: 11 LDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQ 66

>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3 Domain Length = 73

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+++P+ND EL  REG+ + +  + D+ WY G     G  G FP +YV+
Sbjct: 18  ALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLH--GQSGFFPLSYVQ 66

>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3 Length = 68

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           R  ++F  +   EL   +G+++TL  ++D NW+EG I    G FP+ YVE
Sbjct: 6  CRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVE 56

>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3 Length = 68

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
            LY+++P+N  EL  +EG+ + +  + D+ WY G     G  G FP NYVE
Sbjct: 8   GLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIH--GESGFFPINYVE 56

>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of Cd2ap Length = 60

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 102 LYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           L++Y PQN+DELEL  G+ + V+E+ ++GW+ G+       G FP N+V+
Sbjct: 10  LFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNK--LGLFPSNFVK 57

>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline- Serine-Threonine Phosphatase-Interacting Protein 1 Length = 69

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           Y ALY+Y  QN DEL+L  G+ + V+ + +DGW+  + +R+G  G  PG+Y+E+ S
Sbjct: 11  YRALYDYTAQNPDELDLSAGDILEVILEGEDGWW--TVERNGQRGFVPGSYLEKLS 64

>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox) Length = 341

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 37/57 (64%)
Query: 16  KLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           +++  +A A F+F   + LEL+   G+++ L+ R++ +W EG +    GIFP+++V+
Sbjct: 171 RMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 227

>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase Length = 60

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          +A A F+F   + LEL+   G+++ L+ R++ +W EG +    GIFP+++V+
Sbjct: 6  RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 57

>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin Length = 79

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+++ + DDEL L +G+ V + EK ++GW+ GS   +G  G FP  YVE
Sbjct: 12  ALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGS--LNGKKGHFPAAYVE 60

>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox Length = 79

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 37/57 (64%)
Query: 16 KLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          +++  +A A F+F   + LEL+   G+++ L+ R++ +W EG +    GIFP+++V+
Sbjct: 15 RMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 71

>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo Rho Gtpase-Activating Protein 2 Length = 72

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
          +A AKF++V +T  ELS  KG  + L +R  ++W+EGR     G+ P  Y+  Q  + PS
Sbjct: 11 EAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTSGPS 70

>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae Hypothetical 40.4 Kda Protein At 1.39 A Resolution Length = 60

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPVTYVE 72
          S  +A A ++F  +   +L   KG+++T++++ D  N+W+ GR+  R GIFP  YVE
Sbjct: 2  SSPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 58

>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain From Human Cd2ap (Cms) In Complex With A Proline-Rich Peptide From Human Rin3 Length = 65

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA 156
             L+ Y PQN+DELEL+ G+ + + E+ ++GW+ G+       G FP N+V+   + 
Sbjct: 11  KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNK--LGLFPSNFVKELEVT 65

>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein Length = 68

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           Y ALY + PQ +++LE+R G+ + ++E  ++ W+ G  Q     G FP N+V+R S
Sbjct: 10  YVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDR--IGFFPANFVQRLS 63

>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms Protein Length = 65

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
             L+ Y PQN+DELEL+ G+ + + E+ ++GW+ G+       G FP N+V+
Sbjct: 5   KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNK--LGLFPSNFVK 54

>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3 Length = 58

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
           ALY + PQ D +L L+ G+ V ++EK    WY GS   +G  G FP NYV+ A
Sbjct: 7   ALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSC--NGRTGIFPANYVKPA 57

>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
            +Y+Y  QNDDEL   +G+ + V+ K D  W+ G  + SG  G FP NYV+
Sbjct: 7   GMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKG--EVSGQVGLFPSNYVK 55

>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Protein Vav-2 Length = 73

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVEQQS 75
          A A++NF A+   ELSL +G++V +  R+  D  W++G    R G FP TYVE++ 
Sbjct: 10 AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEG 65

>pdb|2VWF|A Chain A, Grb2 Sh3c (2) Length = 58

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 96  PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           P    AL+++ PQ D EL  R G+ + VM+  D  W+ G+    G  G FP NYV
Sbjct: 2   PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 54

>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From Ste20p Length = 73

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           ALY+++P+ND+EL L EG+ VF+  K   GW V  ++     G  P  +V
Sbjct: 10  ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 59

>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
          Q  A +++ A    ELS  KG+L+ ++ + D +W++G I    G+FP  YV+  + + PS
Sbjct: 20 QVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSDPS 79

>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           A+Y+Y   N+DEL   +G+ + VM K D  W+ G  + +G  G FP NYV+  +
Sbjct: 23  AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQG--EINGVTGLFPSNYVKMTT 74

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 96  PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           P    AL+++ PQ D EL  R G+ + VM+  D  W+ G+    G  G FP NYV
Sbjct: 158 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 210

>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein Length = 92

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
              ++Y PQNDDELEL+ G+ + V+ + ++GW+ G    +G  G FP N+++  S
Sbjct: 22  QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV--LNGKTGMFPSNFIKELS 74

>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE Nucleotide Exchange Factor(Gef) 6 Length = 76

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSG 81
           +A+FNF      ELS+ KG+++ + R  +  W+EG +  R G FP  YV +   +  SG
Sbjct: 13 VKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERSG 72

>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 Length = 68

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
              ++Y PQNDDELEL+ G+ + V+ + ++GW+ G    +G  G FP N+++  S
Sbjct: 11  QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV--LNGKTGMFPSNFIKELS 63

>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85 Adapter Protein Length = 73

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYVE 72
          S+   +  F + AQ   EL++ +G++VTLI +  +D  W+EG +  RRG+FP  +V+
Sbjct: 8  SKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 64

>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85 Adapter Protein Length = 73

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVE 151
             ++ Y+ QNDDEL ++EG+ V ++ K   D GW+ G  + +G  G FP N+V+
Sbjct: 13  KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEG--ELNGRRGVFPDNFVK 64

>pdb|1YN8|A Chain A, Sh3 Domain Of Yeast Nbp2 Length = 59

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           ALY+++P+ND+EL L EG+ VF+  K   GW V  ++     G  P  +V
Sbjct: 6   ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 55

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           + ALY ++P+  DEL + EG+ +++ +  D  W+ G+S+  G  G  P NYV
Sbjct: 17  FRALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSK--GRTGLIPSNYV 66

>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From Alpha- Pak Length = 65

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
           RAKFNF      ELS  KG+++ + R  +  W+EG +  R G FP  YV +
Sbjct: 11 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVRE 62

>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 (Regulator Of Ubiquitous Kinase, Ruk) Length = 70

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYVEQQS 75
           +  F + AQ   EL++ +G++VTLI +  +D  W+EG +  RRG+FP  +V+  S
Sbjct: 10 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLS 65

>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Intersectin2 (Kiaa1256) Length = 93

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 99  YHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVER 152
           Y ALY ++ +N DE+    G+ + V EK   + GW  GS Q  G FG FP NYVE+
Sbjct: 8   YRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQ--GNFGWFPCNYVEK 61

>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2) From Homo Sapiens At 2.20 A Resolution Length = 58

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 97  VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           +P    + Y  + +DEL L  G  V V E C DGW+ GS   +G  G FP NYV
Sbjct: 2   IPAFVXFAYVAEREDELSLVXGSRVTVXEXCSDGWWRGS--YNGQIGWFPSNYV 53

>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse Sh3 Domain Containing Ring Finger 2 Length = 68

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          +A+A  N+  +   +L   KG+++ L R++D NW++G I    GIFP + VE
Sbjct: 9  RAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVE 60

>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast Stimulating Factor 1 (Ostf1) Length = 68

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           + ALY ++P+  DEL   EG+ +++ +  D  W+ G+S+  G  G  P NYV   S
Sbjct: 10  FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVAEQS 63

>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag (Inset) Using A Sortase-Mediated Protein Ligation Method Length = 142

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 20 GQARAKFNFVAQTHLELSLVKGELVTLI-RRVDNNWFEGRIGTRRGIFPVTYVEQ 73
          G A+A+++F A+   ELSL +G+++ ++ ++    W+ G I  R G FP  YVE+
Sbjct: 6  GTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEE 60

>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse Hypothetical Protein Sh3rf2 Length = 70

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           AL+ Y     +EL+L++GE + V+ K  DGW  G S  +G  G FP +YV
Sbjct: 12  ALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYV 61

>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85 Length = 69

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYVE 72
           +  F + AQ   EL++ +G++VTLI +  +D  W+EG +  RRG+FP  +V+
Sbjct: 5  CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 57

>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85 Length = 69

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVE 151
             ++ Y+ QNDDEL ++EG+ V ++ K   D GW+ G  + +G  G FP N+V+
Sbjct: 6   KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEG--ELNGRRGVFPDNFVK 57

>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast Stimulating Factor Length = 58

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           + ALY ++P+  DEL   EG+ +++ +  D  W+ G+S+  G  G  P NYV
Sbjct: 6   FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYV 55

>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A Hetero- Trimericcortactin:arg:lysozyme Complex Length = 65

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+Y+   DDE+     + +  +E  DDGW+ G  +  G +G FP NYVE
Sbjct: 14  ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYVE 62

>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 62

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYVE 72
          S+   +  F + AQ   EL++ +G++VTLI +  +D  W+EG +  RRG+FP  +V+
Sbjct: 2  SKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 58

>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 62

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 102 LYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVE 151
           ++ Y+ QNDDEL ++EG+ V ++ K   D GW+ G  + +G  G FP N+V+
Sbjct: 9   IFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEG--ELNGRRGVFPDNFVK 58

>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And Amap1- Peptide Complex Length = 66

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+Y+   DDE+     + +  +E  DDGW+ G  +  G +G FP NYVE
Sbjct: 15  ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYVE 63

>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein Abp1 Sh3 Domain Length = 58

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           A Y+Y    D+EL   E + +  +E  DD W++G  ++ G  G FP NYV
Sbjct: 5   AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54

>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length = 64

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
          RAKFNF      ELS  KG+++ + R  +  W+EG    R G FP  YV +
Sbjct: 10 RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 60

>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains Length = 61

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
            AL+++ PQ D EL  R G+ + VM+  D  W+ G+    G  G FP NYV
Sbjct: 6   QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 54

>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain Length = 60

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPVTYV 71
          A A +NF  +   +L+  KG+++T++++ D  N+W+ GR   + GIFP  YV
Sbjct: 6  AVALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYV 57

>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal Sh3 Domain Complexed With A Ligand Peptide (Nmr, Minimized Mean Structure) Length = 59

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           AL+++ PQ D EL  R G+ + VM+  D  W+ G+    G  G FP NYV
Sbjct: 7   ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 54

>pdb|2VVK|A Chain A, Grb2 Sh3c (1) Length = 56

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           AL+++ PQ D EL  R G+ + VM+  D  W+ G+    G  G FP NYV
Sbjct: 5   ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 52

>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 59

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+Y  Q  DEL  +EG+T+ V +K   GW+ G  + +G  G  P NYV+
Sbjct: 9   ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEG--ELNGKRGWVPANYVQ 57

>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal Transducing Adaptor Molecule 2 Length = 88

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           ALY+++   D+EL  + GE + V++  D  W+ G + R    G FP N+V
Sbjct: 22  ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRG--IGLFPSNFV 69

>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States By Relaxation Dispersion Nmr Length = 62

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           A Y+Y    D+EL   E + +  +E  DD W++G  ++ G  G FP NYV
Sbjct: 9   AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 58

>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex With A High Affinity Peptide From Pak2 Length = 59

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
           RAKFNF      ELS  KG+++ + R  +  W+EG    R G FP  YV +
Sbjct: 7  VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 58

>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 58

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+Y  Q  DEL  +EG+T+ V +K   GW+ G  + +G  G  P NYV+
Sbjct: 8   ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEG--ELNGKRGWVPANYVQ 56

>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src Substrate Cortactin Length = 79

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+Y+   DDE+     + +  +E  DDGW+ G  +  G +G FP NYVE
Sbjct: 22  ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYVE 70

>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The Function Of Yeast Sh3 Domains Length = 59

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           A Y+Y    D+EL   E + +  +E  DD W++G  ++ G  G FP NYV
Sbjct: 6   AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 55

>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase, 20 Structures Length = 58

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
           ALY+Y P N ++L+LR+G+  F++E+ +  W+  +  ++G  G  P NYV  A
Sbjct: 6   ALYDYMPMNANDLQLRKGDEYFILEESNLPWW-RARDKNGQEGYIPSNYVTEA 57

>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange Factor Length = 61

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
           RAKFNF      ELS  KG+++ + R  +  W+EG    R G FP  YV +
Sbjct: 9  VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 60

>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42 Structures Length = 67

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
           ALY+Y P N ++L+LR+G+  F++E+ +  W+  +  ++G  G  P NYV  A
Sbjct: 13  ALYDYMPMNANDLQLRKGDEYFILEESNLPWW-RARDKNGQEGYIPSNYVTEA 64

>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1 (Sh3g1b1) Length = 81

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVEQQSRAT 78
          +AR  +++ A    ELSL+  E++T+   V  D++W  G  G ++G  P+TY+E  +   
Sbjct: 19 KARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNSGP 78
Query: 79 PSG 81
           SG
Sbjct: 79 SSG 81

>pdb|2FPF|A Chain A, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution Length = 71

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNY 149
           A++ + P+++DELEL   + + V  + +D WY   + R+G  G FP  Y
Sbjct: 11  AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYY 59

>pdb|2FPD|A Chain A, Sad Structure Determination: Crystal Structure Of The Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold Protein Length = 62

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNY 149
           + A++ + P+++DELEL   + + V  + +D WY   + R+G  G FP  Y
Sbjct: 6   HRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNXRTGARGVFPAYY 56

>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10 Sh3 Domain Length = 89

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Query: 92  THSDPVPYHALYNYKPQNDDELELREGETVFVM-EKC----DDGWYVGSSQRSGCFGTFP 146
           T + PV + A+++Y+   D+EL LR G+ V V+ + C    D+GW+ G    SG  G FP
Sbjct: 26  TPAGPV-WTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTG-QLPSGRVGVFP 83
Query: 147 GNYV 150
            NYV
Sbjct: 84  SNYV 87

>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A Ubpy-Derived Peptide Length = 62

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           ALY+++   D+EL  + GE + V++  D  W+ G + R    G FP N+V
Sbjct: 10  ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGT--GLFPSNFV 57

>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The Adaptor Protein Gads In Complex With Slp-76 Motif Peptide Reveals A Unique Sh3-Sh3 Interaction Length = 59

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR 76
          ARA ++F A    EL    GE+V ++   + +W+ GR+  + G+FP  YV    R
Sbjct: 5  ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMMR 59

>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The Adaptor Protein Gads In Complex With Slp-76 Motif Peptide Reveals A Unique Sh3-Sh3 Interaction Length = 59

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           ALY+++   +DEL  R GE V V++  +  W+ G        G FP NYV
Sbjct: 7   ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNK--LGLFPANYV 54

>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE Length = 58

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           ALY+++   +DEL  R GE V V++  +  W+ G        G FP NYV
Sbjct: 6   ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNK--LGLFPANYV 53

>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN Length = 62

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           ALY+++   +DEL  R GE V V++  +  W+ G        G FP NYV
Sbjct: 10  ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNK--LGLFPANYV 57

>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal Sh3 Domain Length = 60

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           ALY+++   +DEL  R GE V V++  +  W+ G        G FP NYV
Sbjct: 8   ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNK--LGLFPANYV 55

>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180 Length = 74

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGC-FGTFPGNYV 150
           A YNY  +  DEL L+ G+TV ++E   +GWY G + R     G FP +Y+
Sbjct: 16  AFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYI 65

>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain Complexed With A Ten-Residue Peptide Derived From Sos Direct Refinement Against Noes, J-Couplings, And 1h And 13c Chemical Shifts, 15 Structures Length = 74

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 101 ALYNYKPQNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A Y++K   DDEL  + G+ + V+ E+CD  WY   ++ +G  G  P NY+E
Sbjct: 14  AKYDFKATADDELSFKRGDILKVLNEECDQNWY--KAELNGKDGFIPKNYIE 63

>pdb|2LQN|A Chain A, Solution Structure Of Crkl Length = 303

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 23  RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR-GIFPVTYVEQQSRATPSG 81
           R  ++F      +L   KGE++ +I + +  W+  R    R G+ PV YVE+  R++P G
Sbjct: 129 RTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHG 188
Query: 82  APVDQTLHIDTHSDPVPYHA 101
              ++  + +++  P P HA
Sbjct: 189 KHGNR--NSNSYGIPEPAHA 206

>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl Length = 303

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 23  RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR-GIFPVTYVEQQSRATPSG 81
           R  ++F      +L   KGE++ +I + +  W+  R    R G+ PV YVE+  R++P G
Sbjct: 129 RTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHG 188
Query: 82  APVDQTLHIDTHSDPVPYHA 101
              ++  + +++  P P HA
Sbjct: 189 KHGNR--NSNSYGIPEPAHA 206

>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121 Lattice) Length = 486

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 92  THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDD-GWYVGSSQRSGCFGTFPGNYV 150
           T    V   ALY+Y+ Q  DEL  + G+ +  ME  D+ GW  G    +G  G +P NYV
Sbjct: 424 TSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLD-NGQVGLYPANYV 482
Query: 151 E 151
           E
Sbjct: 483 E 483

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	191
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	2e-38
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	6e-16
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	1e-30
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	7e-23
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	6e-12
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	3e-28
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	4e-13
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	1e-27
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	2e-12
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	2e-27
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	2e-11
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	2e-26
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	2e-11
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	5e-26
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	2e-08
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	1e-25
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	1e-12
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	1e-25
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	5e-12
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	2e-25
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	4e-13
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-24
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-13
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	7e-11
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	8e-24
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	3e-15
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	1e-23
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	8e-13
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	8e-10
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	9e-23
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	3e-12
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	1e-22
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	2e-06
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	2e-21
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	3e-04
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	1e-20
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	8e-09
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	1e-20
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	1e-14
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	1e-20
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	1e-15
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	1e-20
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	7e-10
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	1e-20
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	8e-19
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	2e-20
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	2e-10
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	6e-20
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	6e-10
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	9e-20
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	5e-17
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	1e-19
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	1e-16
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	1e-19
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	2e-15
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	3e-19
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	1e-17
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	3e-19
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	4e-15
3u23_A	65	CD2-associated protein; structural genomics, struc	5e-19
3u23_A	65	CD2-associated protein; structural genomics, struc	8e-16
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	8e-19
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	5e-18
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	1e-18
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	3e-10
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	2e-18
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	5e-15
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	2e-18
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	8e-16
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	3e-18
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	1e-08
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	4e-18
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	2e-07
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	5e-18
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-13
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	7e-18
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	3e-12
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	9e-18
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	4e-16
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	9e-18
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	5e-16
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	1e-17
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	5e-16
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	1e-17
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	4e-11
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	1e-17
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	1e-16
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	1e-17
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	8e-17
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	1e-17
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	7e-17
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	1e-17
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	1e-09
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	2e-17
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	1e-15
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	2e-17
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	3e-15
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	2e-17
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	1e-12
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	2e-17
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	4e-16
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	3e-17
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	3e-16
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	3e-17
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	6e-17
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	3e-17
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	4e-15
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	3e-17
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	5e-15
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	3e-17
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	3e-17
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	3e-17
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	2e-12
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	4e-17
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	5e-16
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	4e-17
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	2e-14
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	4e-17
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	8e-15
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	5e-17
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	6e-07
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	5e-17
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	1e-15
1wxb_A	68	Epidermal growth factor receptor pathway substrate	7e-17
1wxb_A	68	Epidermal growth factor receptor pathway substrate	5e-11
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	9e-17
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	3e-12
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	1e-16
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	7e-16
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	1e-16
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	1e-16
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	1e-16
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	1e-13
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	1e-16
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	3e-05
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	1e-16
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	5e-16
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	1e-16
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	5e-12
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	2e-16
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	1e-14
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	2e-16
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	4e-14
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	2e-16
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	6e-16
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	2e-16
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	9e-16
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	3e-16
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	4e-13
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	3e-16
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	1e-15
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	4e-16
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	3e-15
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	5e-16
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	2e-14
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	5e-16
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	2e-10
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	6e-16
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	6e-08
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	6e-16
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	1e-12
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	6e-16
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	2e-10
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	7e-16
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	4e-14
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	8e-16
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	2e-15
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	8e-16
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	3e-15
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	9e-16
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	1e-13
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	9e-16
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	3e-08
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	9e-16
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	1e-11
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	1e-15
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	1e-14
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	1e-15
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	1e-11
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	1e-15
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	1e-15
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	1e-15
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	1e-14
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	1e-15
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	1e-15
1awj_A	77	ITK; transferase, regulatory intramolecular comple	1e-15
1awj_A	77	ITK; transferase, regulatory intramolecular comple	1e-12
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	1e-15
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	4e-11
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-15
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	7e-14
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	1e-15
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	1e-13
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	2e-15
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	6e-15
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	2e-15
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	1e-08
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	2e-15
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	1e-14
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	2e-15
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	2e-11
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	2e-15
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	2e-13
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	2e-15
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	4e-13
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	2e-15
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	1e-14
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	2e-15
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	2e-13
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	2e-15
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	3e-13
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	3e-15
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	7e-15
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	3e-15
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	3e-12
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	3e-15
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	7e-08
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	3e-15
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	2e-11
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	5e-15
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	6e-11
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	5e-15
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	2e-10
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	5e-15
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	2e-10
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	5e-15
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	2e-12
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	6e-15
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	4e-13
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	6e-15
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	1e-13
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	6e-15
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	8e-15
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	7e-15
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	8e-15
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	8e-15
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	5e-13
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	1e-14
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	7e-12
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	1e-14
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	7e-10
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	1e-14
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	1e-13
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	2e-14
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	3e-12
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	2e-14
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	9e-14
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	2e-14
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	2e-14
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	2e-14
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	1e-13
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	2e-14
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	2e-13
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	2e-14
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	6e-09
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	2e-14
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	2e-08
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	3e-14
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	4e-12
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	3e-14
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	5e-14
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	3e-14
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	3e-11
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	4e-14
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	3e-11
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	4e-09
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	4e-14
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	5e-13
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	4e-14
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	1e-13
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	5e-14
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-13
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	5e-14
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	4e-13
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	6e-14
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	4e-13
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	7e-14
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	3e-12
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	8e-14
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-13
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	9e-14
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	2e-10
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	1e-13
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	1e-12
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	1e-13
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	2e-12
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-13
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	7e-10
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	2e-13
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	1e-09
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	2e-13
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	4e-11
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	3e-13
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	2e-11
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	3e-13
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	3e-12
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	3e-13
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	5e-08
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	4e-13
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	8e-09
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	4e-13
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	9e-10
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	5e-13
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	1e-08
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	6e-13
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	2e-10
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	6e-13
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	7e-13
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	5e-09
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	7e-13
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	7e-10
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	8e-13
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	3e-07
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	1e-12
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	5e-10
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	1e-12
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	4e-08
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	2e-12
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	3e-08
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	2e-12
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	7e-10
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	2e-12
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	1e-10
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	2e-12
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	1e-07
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	2e-12
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	1e-11
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	2e-12
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	2e-11
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	6e-12
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	2e-08
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	6e-12
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	2e-09
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	8e-12
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	4e-07
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	9e-12
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	2e-08
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	9e-12
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	3e-10
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	9e-12
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	1e-08
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	1e-11
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	2e-09
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	2e-11
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	4e-09
1i07_A	60	Epidermal growth factor receptor kinase substrate	3e-11
1i07_A	60	Epidermal growth factor receptor kinase substrate	1e-08
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	5e-11
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	4e-08
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	2e-10
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	3e-08
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	2e-10
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	7e-08
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	1e-09
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	4e-09
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	2e-09
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	7e-05
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-09
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	5e-05
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	4e-09
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	1e-08
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	7e-09
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	4e-04
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-08
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-08
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-04
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	2e-08
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	3e-08
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	1e-07
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	3e-07
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	5e-07
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	1e-06
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	2e-06
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	5e-06
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	2e-04

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score =  130 bits (327), Expect = 2e-38
 Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 9/144 (6%)

Query: 11  RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY 70
             +P+ +     RA  ++   +  E++L  G++V ++ + ++ W+  ++  +RG  P ++
Sbjct: 3   LGSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASF 62

Query: 71  VEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDG 130
           +E       +  P              PY A+  Y     DE+ L EGE V V+ K  DG
Sbjct: 63  LEPLDSPDETEDPEPNY-------AGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDG 115

Query: 131 WYVGSSQRSGCFGTFPGNYVERAS 154
           W+V         G FP  Y++++ 
Sbjct: 116 WWVIRK--DDVTGYFPSMYLQKSG 137

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 71.6 bits (175), Expect = 6e-16
 Identities = 20/123 (16%), Positives = 45/123 (36%)

Query: 4   IIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR 63
           +   D+        +     A   + A    E+SL++GE V +I ++ + W+  R     
Sbjct: 66  LDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVT 125

Query: 64  GIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFV 123
           G FP  Y+++  +         +       S     H+++    +   +   R     F+
Sbjct: 126 GYFPSMYLQKSGQDVSQAQRQIKRGAPPRRSSIRNAHSIHQRSRKRLSQDAYRRNSVRFL 185

Query: 124 MEK 126
            ++
Sbjct: 186 QQR 188

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score =  112 bits (281), Expect = 1e-30
 Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 27/172 (15%)

Query: 5   IPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RR 63
           +    +  A KK         F F  +   +L   +GE + ++ + + +W+E R      
Sbjct: 133 LTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTT 192

Query: 64  GIFPVTYVE------------------------QQSRATPSGAPVDQTLHIDTHSDPVPY 99
           G+ P  YV+                           R + +    D              
Sbjct: 193 GLVPANYVQIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKV 252

Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
                    +  +L +++G+TV V +K  +G Y       G  G+ P  Y+ 
Sbjct: 253 TFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELD--GQIGSVPHTYLR 302

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 92.2 bits (228), Expect = 7e-23
 Identities = 16/134 (11%), Positives = 39/134 (29%), Gaps = 2/134 (1%)

Query: 19  EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRAT 78
           +     +++   +   E + V   L+      ++      +      FP           
Sbjct: 71  DSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKM 130

Query: 79  PSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQR 138
                                   + +  + + +L   +GE + ++ K +  W+   +  
Sbjct: 131 RVLTEASLLAAYKKPIIE-VVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNAL 189

Query: 139 SGCFGTFPGNYVER 152
            G  G  P NYV+ 
Sbjct: 190 -GTTGLVPANYVQI 202

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 62.2 bits (150), Expect = 6e-12
 Identities = 14/72 (19%), Positives = 31/72 (43%)

Query: 1   MSSIIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG 60
            S+    D I   P+  ++ +        A    +L + KG+ V + +++ N  ++  + 
Sbjct: 231 SSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELD 290

Query: 61  TRRGIFPVTYVE 72
            + G  P TY+ 
Sbjct: 291 GQIGSVPHTYLR 302

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 99.6 bits (249), Expect = 3e-28
 Identities = 39/63 (61%), Positives = 49/63 (77%)

Query: 92  THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           + S   PY A+Y Y+PQN+DELELREG+ V VM++CDDGW+VG S+R+  FGTFPGNYV 
Sbjct: 3   SGSSGTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVA 62

Query: 152 RAS 154
             S
Sbjct: 63  PVS 65

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 60.7 bits (148), Expect = 4e-13
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRAT 78
            RA + +  Q   EL L +G+ V ++++ D+ WF G      + G FP  YV   S   
Sbjct: 9  PYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSG-P 67

Query: 79 PSG 81
           SG
Sbjct: 68 SSG 70

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 98.0 bits (245), Expect = 1e-27
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 98  PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
            + A++ + P+++DELEL   + + V  + +D WY   + R+G  G FP  Y    +
Sbjct: 5   THRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT 61

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 58.7 bits (143), Expect = 2e-12
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEG---RIGTRRGIFPVTYVEQQ 74
          SE   RA F FV +   EL L   + + +  + ++ W+E    R G  RG+FP  Y  + 
Sbjct: 2  SEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTG-ARGVFPAYYAIEV 60

Query: 75 SR 76
          ++
Sbjct: 61 TK 62

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 97.7 bits (244), Expect = 2e-27
 Identities = 17/64 (26%), Positives = 32/64 (50%)

Query: 91  DTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           +       + A++ + P+++DELEL   + + V  + +D WY   + R+G  G FP  Y 
Sbjct: 1   NGEEHEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYA 60

Query: 151 ERAS 154
              +
Sbjct: 61  IEVT 64

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 56.5 bits (137), Expect = 2e-11
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 16 KLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEG---RIGTRRGIFPVTYVE 72
          +  E   RA F FV +   EL L   + + +  + ++ W+E    R G  RG+FP  Y  
Sbjct: 3  EEHEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTG-ARGVFPAYYAI 61

Query: 73 QQSRATPSGA 82
          + ++     A
Sbjct: 62 EVTKEPEHMA 71

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 95.0 bits (237), Expect = 2e-26
 Identities = 22/56 (39%), Positives = 36/56 (64%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           Y A+Y+Y  Q++DE+  R+G+ +  ++  DDGW  G+ QR+G  G  P NY+E  +
Sbjct: 9   YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFVN 64

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 56.5 bits (137), Expect = 2e-11
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVE 72
            RA +++ AQ   E+S   G+ +  ++ +D+ W  G +    R G+ P  Y+E
Sbjct: 8  TYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 94.9 bits (236), Expect = 5e-26
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 98  PYHALYNYKPQNDDELELREGETVFVMEK----CDDGWYVGSSQRSGCFGTFPGNYVERA 153
               +Y Y PQNDDELEL  G+ +F+         +GW  G+S  +GC G  P NY+ +A
Sbjct: 18  TLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKA 77

Query: 154 SLALRWVENAS 164
                W+ + S
Sbjct: 78  DECSTWIFHGS 88

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 49.0 bits (117), Expect = 2e-08
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 14 PKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRR----VDNNWFEGRIGT--RRGIFP 67
           +  +    +  + +  Q   EL LV G+ + +           W  G   T    G+ P
Sbjct: 11 IRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLP 70

Query: 68 VTYVEQQSRA 77
            Y+ +    
Sbjct: 71 ENYITKADEC 80

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 93.5 bits (233), Expect = 1e-25
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
             ALY+++P+ND+EL L EG+ VF+  K   GW V  ++     G  P  +V 
Sbjct: 8   AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 60

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 59.6 bits (145), Expect = 1e-12
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWF--EGRIGTRRGIFPVTYVE 72
          +A A ++F  +   EL L +G++V +  +    W   E   G++ G+ P  +V 
Sbjct: 7  RAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 60

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 93.0 bits (232), Expect = 1e-25
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
           S    + AL+ Y     +EL+L++GE + V+ K  DGW  G S  +G  G FP +YV   
Sbjct: 5   SSGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPV 64

Query: 154 S 154
           S
Sbjct: 65  S 65

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 57.6 bits (140), Expect = 5e-12
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRAT 78
             A   + A    EL L KGE + ++ +  + W +G      R GIFP  YV   S   
Sbjct: 9  MFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSG-P 67

Query: 79 PSG 81
           SG
Sbjct: 68 SSG 70

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 92.2 bits (230), Expect = 2e-25
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
             ALY+++P+ND+EL L EG+ VF+  K   GW V  ++     G  P  +V 
Sbjct: 4   AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 56

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 60.3 bits (147), Expect = 4e-13
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR--IGTRRGIFPVTYVE 72
          +A A ++F  +   EL L +G++V +  +    W       G++ G+ P  +V 
Sbjct: 3  RAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 56

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 96.2 bits (238), Expect = 2e-24
 Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 30/159 (18%)

Query: 21  QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQSRATP 79
             RA F+F      +L   KG+++ +  + +  W+       +RG+ PV YVE+   A+ 
Sbjct: 136 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASA 195

Query: 80  SGAPVDQTLHIDTHSDPVPYH---------------------------ALYNYKPQNDDE 112
           S + +       +H  P+                                      +   
Sbjct: 196 SVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTA 255

Query: 113 LELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           L L  GE V V +    G + G     G  G FP  +V 
Sbjct: 256 LALEVGELVKVTKINVSGQWEGECN--GKRGHFPFTHVR 292

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 66.9 bits (162), Expect = 1e-13
 Identities = 17/60 (28%), Positives = 26/60 (43%)

Query: 21  QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
           +   K    A     L+L  GELV + +   +  +EG    +RG FP T+V    +  P 
Sbjct: 241 RVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNPE 300

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 58.8 bits (141), Expect = 7e-11
 Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 79  PSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQR 138
           P       +  I    +     AL+++   ++++L  ++G+ + + +K ++ W+      
Sbjct: 117 PVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNA-EDS 175

Query: 139 SGCFGTFPGNYVE 151
            G  G  P  YVE
Sbjct: 176 EGKRGMIPVPYVE 188

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 88.4 bits (220), Expect = 8e-24
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
           S    +  L+ + P+  +EL++  G  VFV++K +D W       +G  G  P NY+E  
Sbjct: 5   SSGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATV--MFNGQKGLVPCNYLEPV 62

Query: 154 S 154
           S
Sbjct: 63  S 63

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 66.4 bits (163), Expect = 3e-15
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75
            R  F FV +T  EL ++ G +V ++++ ++NW       ++G+ P  Y+E  S
Sbjct: 9  AHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVS 63

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 94.3 bits (233), Expect = 1e-23
 Identities = 30/166 (18%), Positives = 51/166 (30%), Gaps = 39/166 (23%)

Query: 23  RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVE--------- 72
           R  ++F      +L   KGE++ +I + +  W+  R    R G+ PV YVE         
Sbjct: 129 RTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHG 188

Query: 73  ---------------------------QQSRATPSGAPVDQTLHIDTHSDPVPYHALYNY 105
                                        + +   GA +                     
Sbjct: 189 KHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVP 248

Query: 106 KPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
              +   L L  G+ V V     +G + G  + +G  G FP  +V+
Sbjct: 249 CAYDKTALALEVGDIVKVTRMNINGQWEG--EVNGRKGLFPFTHVK 292

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 64.6 bits (156), Expect = 8e-13
 Identities = 19/80 (23%), Positives = 32/80 (40%)

Query: 1   MSSIIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG 60
            S       + +        +A  K    A     L+L  G++V + R   N  +EG + 
Sbjct: 221 GSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN 280

Query: 61  TRRGIFPVTYVEQQSRATPS 80
            R+G+FP T+V+      P 
Sbjct: 281 GRKGLFPFTHVKIFDPQNPD 300

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 55.8 bits (133), Expect = 8e-10
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 85  DQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGT 144
                     +      LY++   + ++L  ++GE + ++EK ++ W+   + + G  G 
Sbjct: 114 SAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARN-KDGRVGM 172

Query: 145 FPGNYVE 151
            P  YVE
Sbjct: 173 IPVPYVE 179

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 92.4 bits (228), Expect = 9e-23
 Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 23/157 (14%)

Query: 21  QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
           +A A F+F   + LEL+   G+++ L+ R++ +W EG +    GIFP+++V+        
Sbjct: 176 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEE 235

Query: 81  GAPV----------------DQTLHIDTHSDPV---PYHALYNYKPQNDDELELR--EGE 119
             P                 D  +  D  S P+             + D  L  R  EG+
Sbjct: 236 DDPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGD 295

Query: 120 TVFVMEKCDDGWYVG-SSQRSGCFGTFPGN-YVERAS 154
            V ++   D    V  +         FP   ++ +  
Sbjct: 296 LVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQKD 332

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 63.1 bits (152), Expect = 3e-12
 Identities = 20/142 (14%), Positives = 44/142 (30%), Gaps = 2/142 (1%)

Query: 10  IRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVT 69
           + T P K+  G  +                   L   +   ++                 
Sbjct: 88  LPTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYDSEQVPQ 147

Query: 70  YVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDD 129
            + +    T     V    +           AL+++   +  EL  + G+ +F++ + + 
Sbjct: 148 ALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINK 207

Query: 130 GWYVGSSQRSGCFGTFPGNYVE 151
            W  G+    G  G FP ++V+
Sbjct: 208 DWLEGTV--RGATGIFPLSFVK 227

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 86.2 bits (213), Expect = 1e-22
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 15/80 (18%)

Query: 88  LHIDTHSDPVPYHALYNYKPQNDDELELREGETVFV-------------MEKCDD--GWY 132
           L      +   Y ALY ++ +  ++LEL  G+ + V              E+C    GW 
Sbjct: 3   LGSMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWM 62

Query: 133 VGSSQRSGCFGTFPGNYVER 152
            G ++R+   G FPG YVE 
Sbjct: 63  PGLNERTRQRGDFPGTYVEF 82

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 17/69 (24%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNN---------------WFEGRIGT--RR 63
          Q RA + F  +   +L L+ G+++ + R                    W  G      +R
Sbjct: 13 QYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQR 72

Query: 64 GIFPVTYVE 72
          G FP TYVE
Sbjct: 73 GDFPGTYVE 81

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A Length = 83

 Score = 82.8 bits (204), Expect = 2e-21
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 15/74 (20%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFV-------------MEKCDD--GWYVGSSQR 138
           ++   Y ALY+YK + +++++L  G+ + V              E   +  GW  G ++ 
Sbjct: 3   AEGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNET 62

Query: 139 SGCFGTFPGNYVER 152
           +G  G FPG YVE 
Sbjct: 63  TGERGDFPGTYVEY 76

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A Length = 83

 Score = 37.4 bits (86), Expect = 3e-04
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 18/81 (22%)

Query: 18 SEG-QARAKFNFVAQTHLELSLVKGELVTLIRRV---------------DNNWFEGRIGT 61
          +EG Q RA +++  +   ++ L  G+++T+ +                 +  W  G   T
Sbjct: 3  AEGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNET 62

Query: 62 --RRGIFPVTYVEQQSRATPS 80
             RG FP TYVE   R   S
Sbjct: 63 TGERGDFPGTYVEYIGRKKIS 83

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 80.4 bits (199), Expect = 1e-20
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 98  PYHALYNY-KPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
              A+  Y K  + DE+   +G+   V  + +DGW   ++ R+   G    + VE  S
Sbjct: 9   RVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVS 66

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 49.2 bits (118), Expect = 8e-09
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 21 QARAKFNFVAQTHL-ELSLVKGELVTLIRRVDNNWFEGR--IGTRRGIFPVTYVEQQSRA 77
          + RA   +       E+S +KG++  +   +++ W          +G+     VE+ S  
Sbjct: 9  RVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSGP 68

Query: 78 TPSG 81
          + SG
Sbjct: 69 S-SG 71

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 80.4 bits (199), Expect = 1e-20
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
           S    Y ALY+Y  QN DEL+L  G+ + V+ + +DGW+    +R+G  G  PG+Y+E+ 
Sbjct: 6   SGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTV--ERNGQRGFVPGSYLEKL 63

Query: 154 S 154
           S
Sbjct: 64  S 64

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 64.6 bits (158), Expect = 1e-14
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
          + RA +++ AQ   EL L  G+++ +I   ++ W+      +RG  P +Y+E+ S    S
Sbjct: 10 EYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLS-GPSS 68

Query: 81 G 81
          G
Sbjct: 69 G 69

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 81.0 bits (200), Expect = 1e-20
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 7/72 (9%)

Query: 80  SGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRS 139
           SG P ++      +   +P +  +NY  + +DEL L +G  V VMEKC DGW+ GS    
Sbjct: 6   SGDPGERL-----YDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYN-- 58

Query: 140 GCFGTFPGNYVE 151
           G  G FP NYV 
Sbjct: 59  GQVGWFPSNYVT 70

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 67.9 bits (166), Expect = 1e-15
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
           A  KFN++A+   ELSL+KG  V ++ +  + W+ G    + G FP  YV ++  +   
Sbjct: 19 PAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPLG 78

Query: 81 GAP 83
             
Sbjct: 79 DHV 81

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 80.5 bits (199), Expect = 1e-20
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
               +  +  DE+ L++ + V V+++ +DGW  G   R G  G FP ++  
Sbjct: 22  ITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFAR 71

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 52.4 bits (126), Expect = 7e-10
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEG-RIGT-RRGIFPVTYVE 72
          Q      F A+   E++L + ++V ++++ D  W  G R+     G FP  +  
Sbjct: 19 QVEITKAFFAKQADEVTLQQADVVLVLQQED-GWLYGERLRDGETGWFPEDFAR 71

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 80.9 bits (200), Expect = 1e-20
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 12/91 (13%)

Query: 62  RRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPY-HALYNYKPQNDDELELREGET 120
           ++G FP ++V+    ++    P            PV    A+Y+Y   N+DEL   +G+ 
Sbjct: 8   QKGWFPASHVKLLGPSSERATPAFH---------PVCQVIAMYDYAANNEDELSFSKGQL 58

Query: 121 VFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           + VM K D  W+ G     G  G FP NYV+
Sbjct: 59  INVMNKDDPDWWQGEIN--GVTGLFPSNYVK 87

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 76.3 bits (188), Expect = 8e-19
 Identities = 20/80 (25%), Positives = 39/80 (48%)

Query: 3  SIIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTR 62
           ++     R  P      Q  A +++ A    ELS  KG+L+ ++ + D +W++G I   
Sbjct: 18 KLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGV 77

Query: 63 RGIFPVTYVEQQSRATPSGA 82
           G+FP  YV+  + ++   +
Sbjct: 78 TGLFPSNYVKMTTDSSGPSS 97

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 79.7 bits (197), Expect = 2e-20
 Identities = 18/72 (25%), Positives = 31/72 (43%)

Query: 82  APVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGC 141
             +  TL     +    + ALY+Y+   +D+L   +GE   ++   +  W+   S  +G 
Sbjct: 1   GSMTGTLRTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE 60

Query: 142 FGTFPGNYVERA 153
            G  P NYV   
Sbjct: 61  TGYIPSNYVAPV 72

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 53.8 bits (130), Expect = 2e-10
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVE 72
             A +++ A T  +LS  KGE   ++   + +W+E R  T    G  P  YV 
Sbjct: 17 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 70

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 78.5 bits (194), Expect = 6e-20
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           + ALY+Y+ + +D+L   +GE   ++   +  W+   S  +G  G  P  Y+    
Sbjct: 8   FEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVD 63

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 52.4 bits (126), Expect = 6e-10
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRATPS 80
           A +++ A+T  +LS  KGE   ++   + +W+E R  T    G  P  Y+    R    
Sbjct: 9  EALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRLDYK 68

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 78.1 bits (193), Expect = 9e-20
 Identities = 32/57 (56%), Positives = 43/57 (75%), Gaps = 2/57 (3%)

Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVE 72
            G+A AKFNF   T +E+S  KGE +TL+R+VD NW+EGRI   +R+GIFP+TYV+
Sbjct: 5  FTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 61

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 70.7 bits (174), Expect = 5e-17
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A +N+      E+  R+GE + ++ + D+ WY G    +   G FP  YV+
Sbjct: 11  AKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 61

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 77.7 bits (192), Expect = 1e-19
 Identities = 23/60 (38%), Positives = 35/60 (58%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
          +A AKF++V +T  ELS  KG  + L +R  ++W+EGR     G+ P  Y+  Q  + PS
Sbjct: 11 EAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTSGPS 70

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 69.6 bits (171), Expect = 1e-16
 Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
            +P+   A ++Y  +   EL  ++G ++ + ++  D W+ G  + +G  G  P  Y+ 
Sbjct: 7   GEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEG--RHNGIDGLIPHQYIV 62

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 77.2 bits (191), Expect = 1e-19
 Identities = 18/56 (32%), Positives = 35/56 (62%)

Query: 17 LSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          +   +A A F+F   + LEL+   G+++ L+ R++ +W EG +    GIFP+++V+
Sbjct: 2  IKHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 57

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 66.4 bits (163), Expect = 2e-15
 Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           AL+++   +  EL  + G+ +F++ + +  W  G+ +  G  G FP ++V+
Sbjct: 9   ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVK 57

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 77.1 bits (190), Expect = 3e-19
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 13 APKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTY 70
            + L  G+A A++ F     +ELS  KGE + LIR+V+ NW+EGRI    R+GIFP +Y
Sbjct: 11 TYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASY 70

Query: 71 VEQQSRATPSGAP 83
          V+           
Sbjct: 71 VQVSREPRLRLCD 83

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 73.2 bits (180), Expect = 1e-17
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A Y +K   + EL  R+GE + ++ K ++ WY G    +G  G FP +YV+
Sbjct: 22  AQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQ 72

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 76.1 bits (188), Expect = 3e-19
 Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
            L+ Y PQN+DELEL+ G+ + + E+ ++GW+ G+       G FP N+V+
Sbjct: 6   VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLN--NKLGLFPSNFVK 54

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 65.7 bits (161), Expect = 4e-15
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          Q +  F ++ Q   EL L  G+++ +   V+  W+ G +  + G+FP  +V+
Sbjct: 3  QCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 75.7 bits (187), Expect = 5e-19
 Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
            L+ Y PQN+DELEL+ G+ + + E+ ++GW+ G+       G FP N+V+
Sbjct: 12  VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLN--NKLGLFPSNFVK 60

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 67.7 bits (166), Expect = 8e-16
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 13 APKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           P    + Q +  F ++ Q   EL L  G+++ +   V+  W+ G +  + G+FP  +V+
Sbjct: 1  GPLGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 60

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 75.4 bits (186), Expect = 8e-19
 Identities = 33/57 (57%), Positives = 44/57 (77%), Gaps = 2/57 (3%)

Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVE 72
          S G+A AKFNF   T +E+S  KGE +TL+R+VD NW+EGRI   +R+GIFP+TYV+
Sbjct: 6  SGGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 62

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 73.4 bits (181), Expect = 5e-18
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A +N+      E+  R+GE + ++ + D+ WY G    +   G FP  YV+
Sbjct: 12  AKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 62

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 75.1 bits (185), Expect = 1e-18
 Identities = 17/61 (27%), Positives = 25/61 (40%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
           S    + ALY+Y      +L   +GE   ++E     W+   S  +G  G  P NYV   
Sbjct: 4   SGVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPV 63

Query: 154 S 154
            
Sbjct: 64  D 64

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 53.5 bits (129), Expect = 3e-10
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQS 75
           A +++ A    +LS  KGE   ++     +W+E R  T    G  P  YV    
Sbjct: 10 VALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVD 64

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 74.6 bits (184), Expect = 2e-18
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
               ++Y PQNDDELEL+ G+ + V+ + ++GW+ G     G  G FP N+++
Sbjct: 10  CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLN--GKTGMFPSNFIK 60

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 65.7 bits (161), Expect = 5e-15
 Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
          + +  F+++ Q   EL L  G+++ ++  V+  W+EG +  + G+FP  ++++ S    S
Sbjct: 9  RCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELS-GPSS 67

Query: 81 G 81
          G
Sbjct: 68 G 68

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 74.6 bits (184), Expect = 2e-18
 Identities = 18/62 (29%), Positives = 37/62 (59%)

Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY 70
               +++  +A A F+F   + LEL+   G+++ L+ R++ +W EG +    GIFP+++
Sbjct: 10 HHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSF 69

Query: 71 VE 72
          V+
Sbjct: 70 VK 71

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 68.1 bits (167), Expect = 8e-16
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 83  PVDQTLHIDTHSDPVPY-HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGC 141
            V    H        P   AL+++   +  EL  + G+ +F++ + +  W  G+ +  G 
Sbjct: 4   KVHHHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GA 61

Query: 142 FGTFPGNYVE 151
            G FP ++V+
Sbjct: 62  TGIFPLSFVK 71

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 75.2 bits (185), Expect = 3e-18
 Identities = 19/78 (24%), Positives = 35/78 (44%)

Query: 77  ATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSS 136
           A+ S + V  +           + ALY+Y+ +  ++L  ++GE   ++   +  W+   S
Sbjct: 8   ASSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARS 67

Query: 137 QRSGCFGTFPGNYVERAS 154
             +G  G  P NYV  A 
Sbjct: 68  IATGKSGYIPSNYVVPAD 85

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPV 68
                       A +++ A+T  +LS  KGE   +I   + +W+E R     + G  P 
Sbjct: 19 YPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPS 78

Query: 69 TYVE 72
           YV 
Sbjct: 79 NYVV 82

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 73.6 bits (181), Expect = 4e-18
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 99  YHALYNY-KPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
             A+  Y K  + DE+   +G+   V  + +DGW   ++ R+   G    + VE
Sbjct: 8   VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 61

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 21 QARAKFNFVAQTHL-ELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSR 76
          + RA   +       E+S +KG++  +   +++ W          +G+     VE+  R
Sbjct: 7  RVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVGR 65

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 73.6 bits (181), Expect = 5e-18
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVG---SSQRSGCFGTFPGNYVE 151
               Y     ++L L  G+ + +++K   GW+ G   +  +    G FP ++V+
Sbjct: 12  VTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 60.9 bits (148), Expect = 4e-13
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTR-----RGIFPVTYVE 72
          A+    +VA    +LSL  G+L+ ++++  + W++G +  R     +G FP ++V+
Sbjct: 10 AQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 72.6 bits (179), Expect = 7e-18
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A Y+Y    D+EL   E + +  +E  DD W++G  ++ G  G FP NYV 
Sbjct: 5   AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 58.0 bits (141), Expect = 3e-12
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVE 72
           A A++++ A    EL+ V+ + +  I  VD++W+ G +     +G+FP  YV 
Sbjct: 2  WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 73.6 bits (181), Expect = 9e-18
 Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
             ++Y PQNDDELEL+ G+ + V+ + ++GW+ G    +G  G FP N+++
Sbjct: 23  VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV--LNGKTGMFPSNFIK 71

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 69.0 bits (169), Expect = 4e-16
 Identities = 16/73 (21%), Positives = 36/73 (49%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
          + +  F+++ Q   EL L  G+++ ++  V+  W+EG +  + G+FP  ++++ S  +  
Sbjct: 20 RCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDE 79

Query: 81 GAPVDQTLHIDTH 93
                  H   H
Sbjct: 80 LGISQDEHHHHHH 92

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 72.6 bits (179), Expect = 9e-18
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 92  THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           + S    + ALY ++P+  DEL   EG+ +++ +  D  W+ G+S+  G  G  P NYV 
Sbjct: 3   SGSSGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVA 60

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 68.4 bits (168), Expect = 5e-16
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75
            RA + F  +T  EL   +G+++ +    D NW++G    R G+ P  YV +QS
Sbjct: 9  VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQS 63

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 72.2 bits (178), Expect = 1e-17
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75
          Q  A F++ A    +L   +G+++ ++ +V+  W EG    + GIFP  +VE  +
Sbjct: 7  QVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA 61

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 68.0 bits (167), Expect = 5e-16
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           AL++Y+    ++LE +EG+ + V+ K ++ W  G S+  G  G FP  +VE ++
Sbjct: 10  ALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESK--GKVGIFPKVFVEDSA 61

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 75.2 bits (184), Expect = 1e-17
 Identities = 16/126 (12%), Positives = 37/126 (29%), Gaps = 2/126 (1%)

Query: 26  FNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGAPVD 85
           ++   +   E + V   L+      ++      +      FP                  
Sbjct: 49  YSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEAS 108

Query: 86  QTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTF 145
                            + +  + + +L   +GE + ++ K +  W+   +   G  G  
Sbjct: 109 LLAAY-KKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARN-ALGTTGLV 166

Query: 146 PGNYVE 151
           P NYV+
Sbjct: 167 PANYVQ 172

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 58.3 bits (140), Expect = 4e-11
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 1   MSSIIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG 60
              ++    +  A KK         F F  +   +L   +GE + ++ + + +W+E R  
Sbjct: 100 KMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNA 159

Query: 61  T-RRGIFPVTYVEQQ 74
               G+ P  YV+ Q
Sbjct: 160 LGTTGLVPANYVQIQ 174

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 72.3 bits (178), Expect = 1e-17
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           Y  + NYK Q + EL L+ GE V V+EK + GW+      S   G  P  Y+E
Sbjct: 11  YVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFV--STSEEQGWVPATYLE 61

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 70.0 bits (172), Expect = 1e-16
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
          Q     N+  Q + ELSL  GE+V +I + ++ W+       +G  P TY+E Q+    S
Sbjct: 10 QYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSGPSS 69

Query: 81 G 81
          G
Sbjct: 70 G 70

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 72.3 bits (178), Expect = 1e-17
 Identities = 21/71 (29%), Positives = 35/71 (49%)

Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY 70
           +      +   +A+FNF      ELS+ KG+++ + R  +  W+EG +  R G FP  Y
Sbjct: 2  SSGSSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNY 61

Query: 71 VEQQSRATPSG 81
          V +   +  SG
Sbjct: 62 VREIKSSERSG 72

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 70.4 bits (173), Expect = 8e-17
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           S  +   A +N+K  N+DEL + +G+ ++V    + GW+ G+    G  G FP NYV 
Sbjct: 8   SHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN--GRTGWFPSNYVR 63

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 72.3 bits (178), Expect = 1e-17
 Identities = 28/52 (53%), Positives = 37/52 (71%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           ARAKF+F AQT  EL L KG++V + +++D NW+EG    R GIFP TY+E
Sbjct: 9  PARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIE 60

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 70.3 bits (173), Expect = 7e-17
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           S   P  A +++K Q   EL L++G+ V++ ++ D  WY G     G  G FP  Y+E
Sbjct: 5   SSGRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHH--GRVGIFPRTYIE 60

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 72.0 bits (177), Expect = 1e-17
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 94  SDPVPYHALYNYKP-QNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           S  +   A++++    N   L  +EG+ + ++  +  DGW+ G S+++   G FP +Y  
Sbjct: 5   SGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTR 64

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 51.2 bits (123), Expect = 1e-09
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 13 APKKLSEGQARAKFNFVA-QTHLELSLVKGELVT-LIRRVDNNWFEGRIGT--RRGIFPV 68
           P      + +A F+  A      LS  +G+L+T L+    + W  G       RG FP 
Sbjct: 1  GPLGSGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPF 60

Query: 69 TYVE 72
          +Y  
Sbjct: 61 SYTR 64

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 72.4 bits (178), Expect = 2e-17
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 77  ATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSS 136
           ++ S    D+      +   +   ALY+Y+   DDE+     + +  +E  DDGW+ G  
Sbjct: 2   SSGSSGTYDE----YENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVC 57

Query: 137 QRSGCFGTFPGNYVE 151
           +  G +G FP NYVE
Sbjct: 58  K--GRYGLFPANYVE 70

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 67.8 bits (166), Expect = 1e-15
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
           A A +++ A    E+S    +++T I  +D+ W+ G    R G+FP  YVE +     S
Sbjct: 19 TAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGPSS 78

Query: 81 G 81
          G
Sbjct: 79 G 79

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 72.0 bits (177), Expect = 2e-17
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           Y  +  Y  Q+ DE+   +G TV V+ K  +GW+       G  G  P +Y+++A 
Sbjct: 11  YVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYL--GKEGWAPASYLKKAK 64

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 66.2 bits (162), Expect = 3e-15
 Identities = 15/63 (23%), Positives = 29/63 (46%)

Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA 77
           E +      + +Q+  E+   KG  V +IR+    W+  R   + G  P +Y+++   +
Sbjct: 7  GEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDS 66

Query: 78 TPS 80
           PS
Sbjct: 67 GPS 69

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 71.4 bits (175), Expect = 2e-17
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 97  VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           +P    + Y  + +DEL L  G  V VME C DGW+ G    +G  G FP NYV 
Sbjct: 2   IPAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRG--SYNGQIGWFPSNYVL 54

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 59.5 bits (144), Expect = 1e-12
 Identities = 19/53 (35%), Positives = 27/53 (50%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
           A   F +VA+   ELSLV G  VT++    + W+ G    + G FP  YV +
Sbjct: 3  PAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLE 55

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 71.5 bits (176), Expect = 2e-17
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          +A+A  N+  +   +L   KG+++ L R++D NW++G I    GIFP + VE
Sbjct: 9  RAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVE 60

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 68.4 bits (168), Expect = 4e-16
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           AL NY+ +N  +L+  +G+ + +  + D+ WY G     G  G FP + VE
Sbjct: 12  ALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEIN--GVSGIFPASSVE 60

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 71.5 bits (176), Expect = 3e-17
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query: 16 KLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           L +   +A ++F  +   EL   +G+L+TL  ++D NW+EG +  + G FP++YV+
Sbjct: 10 PLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQ 66

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 69.2 bits (170), Expect = 3e-16
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+++P+ND EL  REG+ + +  + D+ WY G     G  G FP +YV+
Sbjct: 18  ALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLH--GQSGFFPLSYVQ 66

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 71.0 bits (175), Expect = 3e-17
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           ALY ++P+  DEL   EG+ +++ +  D  W+ G+S+  G  G  P NYV  
Sbjct: 8   ALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVAE 57

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 70.3 bits (173), Expect = 6e-17
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ 74
            RA + F  +T  EL   +G+++ +    D NW++G    R G+ P  YV +Q
Sbjct: 5  VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 58

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 71.0 bits (175), Expect = 3e-17
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
             ++Y+ Q+DDEL +  GE +  + K D GW+ G     G  G FP N+V 
Sbjct: 6   VEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQIN--GRRGLFPDNFVR 54

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 65.6 bits (161), Expect = 4e-15
 Identities = 22/52 (42%), Positives = 35/52 (67%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          +A  +F++ AQ   EL++  GE++T IR+ D  W+EG+I  RRG+FP  +V 
Sbjct: 3  EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVR 54

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 71.6 bits (176), Expect = 3e-17
 Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A+Y+Y    +DEL  +EG  ++V++K DDGWY G     G  G FPGNYVE
Sbjct: 22  AIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMN--GVTGLFPGNYVE 70

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 65.8 bits (161), Expect = 5e-15
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
              +    +  A +++      ELS  +G ++ +I++ D+ W+EG +    G+FP  YV
Sbjct: 10 PWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 69

Query: 72 E 72
          E
Sbjct: 70 E 70

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 71.1 bits (175), Expect = 3e-17
 Identities = 27/52 (51%), Positives = 34/52 (65%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           AR KF+F AQ+  EL+L KG++V + + VD NW EG    R GIFP  YVE
Sbjct: 3  AARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 54

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 71.1 bits (175), Expect = 3e-17
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
             ++++ Q+  EL L++G+ V++ ++ D  W  G     G  G FP NYVE
Sbjct: 6   LKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHH--GRLGIFPANYVE 54

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 73.6 bits (180), Expect = 3e-17
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 21/130 (16%)

Query: 18  SEGQARAKFNFVAQTHLELSLVKGELVTLIRR-VDNNWFEGRIGTRRGIFPVTYVEQ--- 73
           + G A+A+++F A+   ELSL +G+++ ++ +     W+ G I  R G FP  YVE+   
Sbjct: 4   TFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYS 63

Query: 74  ----------------QSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELRE 117
                           +          + T      +        Y      D E    +
Sbjct: 64  EYLPETGGGSGSSMTYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDD 123

Query: 118 GETVF-VMEK 126
               F V E 
Sbjct: 124 ATKTFTVTEH 133

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 61.2 bits (148), Expect = 2e-12
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVER 152
           A Y++  ++  EL L+EG+ + ++ K    GW+ G     G  G FP NYVE 
Sbjct: 10  ARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIY--GRIGWFPSNYVEE 60

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 71.1 bits (175), Expect = 4e-17
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
            R  ++F  +   EL   +G+++TL  ++D NW+EG I    G FP+ YVE
Sbjct: 5  CCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVE 56

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 68.4 bits (168), Expect = 5e-16
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
            LY+++P+N  EL  +EG+ + +  + D+ WY G     G  G FP NYVE
Sbjct: 8   GLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIH--GESGFFPINYVE 56

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 71.7 bits (176), Expect = 4e-17
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 14 PKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYV 71
           +  +  +AR  +++ A    ELSL+  E++T+     +D++W  G  G ++G  P+TY+
Sbjct: 12 KESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYL 71

Query: 72 EQQSRATPSG 81
          E  +    SG
Sbjct: 72 ELLNSGPSSG 81

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 64.3 bits (157), Expect = 2e-14
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVE 151
            LY+Y   N  EL L   E + V      D  W +G  +R    G  P  Y+E
Sbjct: 22  VLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMG--ERGNQKGKVPITYLE 72

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 70.7 bits (174), Expect = 4e-17
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          S   A AKF++V ++  ELS  KG  + L  R   +W+EGR     G+ P  Y+ 
Sbjct: 5  SPEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 64.9 bits (159), Expect = 8e-15
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A ++Y  ++  EL  ++G ++ +  +  + W+ G     G  G  P  Y+ 
Sbjct: 11  AKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHN--GIDGLVPHQYIV 59

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 72.4 bits (177), Expect = 5e-17
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 17/101 (16%)

Query: 69  TYVEQQSRATPSGAPVDQTLHIDTHSDPVPYH----ALYNYKPQNDDELELREGETVFVM 124
             V + S        V+ +        P  +     A ++Y   + DEL+L+ G+ V V+
Sbjct: 13  GLVPRGSHMATVNGAVEGSTTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVI 72

Query: 125 -----EKCDDGWYVGSSQRS--------GCFGTFPGNYVER 152
                E+ D+GW +G  +           C G FP N+ ER
Sbjct: 73  PFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTER 113

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 45.5 bits (107), Expect = 6e-07
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 15/67 (22%)

Query: 21  QARAKFNFVAQTHLELSLVKGELVTLIRR-----VDNNWFEG----------RIGTRRGI 65
           + +A+ ++ A    EL L  G++V +I        D  W  G           +   RG+
Sbjct: 46  KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGV 105

Query: 66  FPVTYVE 72
           FP  + E
Sbjct: 106 FPENFTE 112

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 71.2 bits (175), Expect = 5e-17
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+++ + DDEL L +G+ V + EK ++GW+ GS    G  G FP  YVE
Sbjct: 12  ALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLN--GKKGHFPAAYVE 60

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 67.4 bits (165), Expect = 1e-15
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
            +A ++F A+   EL+L KG++V +  + +  W+ G +  ++G FP  YVE+      +
Sbjct: 9  LCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGN 68

Query: 81 GAP 83
           A 
Sbjct: 69 TAT 71

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 70.4 bits (173), Expect = 7e-17
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
              LY++  +N +EL + + E + V+E     W + S  RSG  G  P N +  AS
Sbjct: 10  VKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRS--RSGQAGYVPCNILGEAS 63

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 54.9 bits (133), Expect = 5e-11
 Identities = 11/55 (20%), Positives = 24/55 (43%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75
            +  ++F A+   ELS++K E++ ++      W       + G  P   + + S
Sbjct: 9  YVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGEAS 63

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 70.3 bits (173), Expect = 9e-17
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
             ALY+Y P N ++L+LR+G+  F++E+ +  W+     ++G  G  P NYV  A 
Sbjct: 11  VVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARD-KNGQEGYIPSNYVTEAE 65

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 58.4 bits (142), Expect = 3e-12
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQS 75
          +  A ++++     +L L KG+   ++   +  W+  R    + G  P  YV +  
Sbjct: 10 KVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 70.0 bits (172), Expect = 1e-16
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A +N++  N+DEL   +G+ + V    + GW+ G+    G  G FP NYV 
Sbjct: 9   AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN--GRTGWFPSNYVR 57

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 67.6 bits (166), Expect = 7e-16
 Identities = 21/52 (40%), Positives = 27/52 (51%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
            RAKFNF      ELS  KG+++ + R  +  W+EG    R G FP  YV 
Sbjct: 6  VVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 57

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 71.4 bits (175), Expect = 1e-16
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQ-RSGCFGTFPGNYVE 151
            LY++K +  DEL    GE +F+    +  W++     R G  G  P  +V 
Sbjct: 10  VLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVS 61

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 71.0 bits (174), Expect = 1e-16
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTR---RGIFPVTYVEQQSRAT 78
          A   ++F A+   EL+   GE + +    +  WF  +   R    G+ PV +V     AT
Sbjct: 8  AIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIAT 67

Query: 79 PSGAPVDQTLHIDTHSDP 96
                D    I + + P
Sbjct: 68 GYATGNDVIEDIKSVNLP 85

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 70.1 bits (172), Expect = 1e-16
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
          +        +A A F +  +T  ELS  +G+++ L  R  ++W+ G     RG+ P  Y+
Sbjct: 3  SGSSGEGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYI 62

Query: 72 E 72
           
Sbjct: 63 T 63

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 62.0 bits (151), Expect = 1e-13
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A + Y  +   EL  R G+ + + E+    W+ G     G  G  P  Y+ 
Sbjct: 15  ACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHN--GMRGLIPHKYIT 63

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 76.1 bits (186), Expect = 1e-16
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 59  IGTRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYH---ALYNYKPQNDDELEL 115
           + T          E      P  +    +L    +      H   A+Y ++P+  DE+ +
Sbjct: 402 VCTFSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPM 461

Query: 116 REGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
             G+ + V     DG+  G +++ G  G +P   V  
Sbjct: 462 EPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVRE 498

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 21  QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR-IGT-RRGIFPVTYVEQQSRAT 78
              A +    +T  E+ +  G+++ +     + + +G      R G++P   V ++    
Sbjct: 444 NQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETV 503

Query: 79  PSGAPVDQTLHIDTHSDPVPYHA 101
                 +       H     +H 
Sbjct: 504 KYPTYPEAEKAGGGHH---HHHH 523

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 69.6 bits (171), Expect = 1e-16
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A +N++  N+DEL   +G+ + V    + GW+ G+    G  G FP NYV 
Sbjct: 11  AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN--GRTGWFPSNYVR 59

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 68.0 bits (167), Expect = 5e-16
 Identities = 21/52 (40%), Positives = 27/52 (51%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
            RAKFNF      ELS  KG+++ + R  +  W+EG    R G FP  YV 
Sbjct: 8  VVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 59

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 69.2 bits (170), Expect = 1e-16
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 99  YHALYNYKPQND-DELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           + A Y++       EL L++G+ +++  +   GW +G        G  P  Y++
Sbjct: 3   FEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 57.6 bits (140), Expect = 5e-12
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 21 QARAKFNFVAQTHL-ELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVE 72
             A ++F       EL L KG+++ + R   + W  G++  G++ G  P  Y++
Sbjct: 2  MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 69.7 bits (171), Expect = 2e-16
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 81  GAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSG 140
           G       H++   +     A+Y+++   D+EL  + GE + V++  D  W+ G +    
Sbjct: 2   GHHHHHHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETH--Q 59

Query: 141 CFGTFPGNYVE 151
             G FP N+V 
Sbjct: 60  GIGLFPSNFVT 70

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 64.6 bits (158), Expect = 1e-14
 Identities = 17/67 (25%), Positives = 31/67 (46%)

Query: 6  PYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGI 65
           +        +    + RA ++F A    EL+   GE++T++   D NW++G      G+
Sbjct: 4  HHHHHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGL 63

Query: 66 FPVTYVE 72
          FP  +V 
Sbjct: 64 FPSNFVT 70

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 69.2 bits (170), Expect = 2e-16
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+Y+   DDE+     + +  +E  DDGW+ G  +  G +G FP NYVE
Sbjct: 14  ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYVE 62

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 63.0 bits (154), Expect = 4e-14
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           A A +++ A    E+S    +++T I  +D+ W+ G    R G+FP  YVE
Sbjct: 11 TAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 62

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 69.2 bits (170), Expect = 2e-16
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
            RA ++F  +   EL   +G+++TL  ++D NW+EG +    G FP+ YVE       S
Sbjct: 9  CCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHS 68

Query: 81 G 81
          G
Sbjct: 69 G 69

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 68.1 bits (167), Expect = 6e-16
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+++P+N+ EL  +EG+ + +  + D+ WY G     G  G FP NYVE
Sbjct: 12  ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLH--GHSGFFPINYVE 60

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 69.8 bits (171), Expect = 2e-16
 Identities = 17/73 (23%), Positives = 29/73 (39%)

Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY 70
                    + RA ++F A    EL+   GE++ ++   D NW++G      G+FP  +
Sbjct: 9  EIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNF 68

Query: 71 VEQQSRATPSGAP 83
          V          A 
Sbjct: 69 VTTNLNIETEAAA 81

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 68.2 bits (167), Expect = 9e-16
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+++   D+EL  + GE + V++  D  W+ G +      G FP N+V 
Sbjct: 22  ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENH--RGIGLFPSNFVT 70

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 68.8 bits (169), Expect = 3e-16
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           S      ALY+YK +  DEL    G  +  + K   GW+ G    +     FP NYVE
Sbjct: 5   SSGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDY-GTRIQQYFPSNYVE 61

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 60.7 bits (148), Expect = 4e-13
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTR-RGIFPVTYVEQQS 75
          S    +A +++ A+   EL+  +G L+  + +    W++G  GTR +  FP  YVE  S
Sbjct: 6  SGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDIS 64

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 68.3 bits (168), Expect = 3e-16
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY + PQ D +L L+ G+ V ++EK    WY GS    G  G FP NYV+
Sbjct: 7   ALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCN--GRTGIFPANYVK 55

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 66.8 bits (164), Expect = 1e-15
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
             A + F  Q   +L L  G+ V L+ ++   W++G    R GIFP  YV+
Sbjct: 4  YVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 68.4 bits (168), Expect = 4e-16
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           ALY + PQ +++LE+R G+ + ++E  ++ W+ G  Q     G FP N+V+R S
Sbjct: 12  ALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQ--DRIGFFPANFVQRLS 63

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 66.1 bits (162), Expect = 3e-15
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
             A + FV Q + +L +  G+++TL+   + +W++G+I  R G FP  +V++ S    S
Sbjct: 9  TYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLS-GPSS 67

Query: 81 G 81
          G
Sbjct: 68 G 68

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 68.0 bits (167), Expect = 5e-16
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           A+ +Y   ++ +L    GE + ++ +    W+ G  +R+GC G  P N+V + S
Sbjct: 12  AIADYAATDETQLSFLRGEKILILRQTTADWWWG--ERAGCCGYIPANHVGKHS 63

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 64.2 bits (157), Expect = 2e-14
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
          +  A  ++ A    +LS ++GE + ++R+   +W+ G      G  P  +V + S  + S
Sbjct: 9  EFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHSGPS-S 67

Query: 81 G 81
          G
Sbjct: 68 G 68

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 68.7 bits (168), Expect = 5e-16
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 73  QQSRATPSGAPVDQTLHIDTHSDPVP--YHALYNYKPQNDDELELREGETVFVMEK---- 126
               ++      +        + P    + A+++Y+   D+EL LR G+ V V+ +    
Sbjct: 4   HHHHSSGVDLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAV 63

Query: 127 -CDDGWYVGSSQRSGCFGTFPGNYVE 151
             D+GW+ G     G  G FP NYV 
Sbjct: 64  SGDEGWWTGQLPS-GRVGVFPSNYVA 88

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 6  PYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRR-----VDNNWFEGRIG 60
               ++     +     A F++ A    EL+L +G+ V ++ +      D  W+ G++ 
Sbjct: 16 ENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLP 75

Query: 61 T-RRGIFPVTYVE 72
          + R G+FP  YV 
Sbjct: 76 SGRVGVFPSNYVA 88

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 67.7 bits (166), Expect = 6e-16
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
             AL++Y+P +D +L   +GE + ++E+  + W+   S  +G  G  P N+V +A
Sbjct: 9   VIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKA 62

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 46.5 bits (111), Expect = 6e-08
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 17 LSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQ 73
          L +    A  ++      +L   KGE + ++ +    W++ +  T  + G  P  +V +
Sbjct: 4  LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAK 61

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 68.1 bits (167), Expect = 6e-16
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           Y A+ ++  Q   +L  ++GE + V+EK  DGW++    + G  G  P  Y+E
Sbjct: 13  YIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAK-GNEGLVPRTYLE 64

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 59.2 bits (144), Expect = 1e-12
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQS 75
          +  A  +F AQ   +L+  KGE++ +I +  + W+  +      G+ P TY+E  S
Sbjct: 12 EYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS 67

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 68.2 bits (167), Expect = 6e-16
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCF---GTFPGNYVERAS 154
           Y  L+++K + D+EL  R G+   V  K +  W+      +G     G  P NY+    
Sbjct: 13  YVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE 71

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 53.9 bits (130), Expect = 2e-10
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-----RRGIFPVTYVEQQS 75
          +    ++F ++T  ELS   G++  + R+ +  W+   +        +G  P  Y+ ++ 
Sbjct: 12 KYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE 71

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 67.6 bits (166), Expect = 8e-16
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY Y  Q+ DEL     + + ++++   GW+ G  +  G  G FP NYV 
Sbjct: 10  ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLR--GKQGLFPNNYVT 58

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 66.1 bits (162), Expect = 2e-15
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 13 APKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           P  L   Q +A + + AQ   ELS    +++ +I+   + W+ GR+  ++G+FP  YV 
Sbjct: 1  GP--LGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVT 58

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 67.7 bits (166), Expect = 8e-16
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVEQQS 75
          S G A A++NF A+   ELSL +G++V +  R+  D  W++G    R G FP TYVE++ 
Sbjct: 6  SGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEG 65

Query: 76 RATPSGA 82
            +   +
Sbjct: 66 IQSGPSS 72

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 66.2 bits (162), Expect = 3e-15
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVE 151
           A YN+  ++  EL LREG+ V +  +   D GW+ G +   G  G FP  YVE
Sbjct: 12  ARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETN--GRIGWFPSTYVE 62

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 67.8 bits (166), Expect = 9e-16
 Identities = 13/71 (18%), Positives = 36/71 (50%)

Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY 70
               +  +    A +++  ++  E+++ KG+++TL+   + +W++  +  R+G  P  Y
Sbjct: 9  HHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAY 68

Query: 71 VEQQSRATPSG 81
          V++ + A    
Sbjct: 69 VKKLAAAWSHP 79

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 62.4 bits (152), Expect = 1e-13
 Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           ALY+Y+ ++  E+ +++G+ + ++   +  W+          G  P  YV++
Sbjct: 22  ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKK 71

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 67.9 bits (166), Expect = 9e-16
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 75  SRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVG 134
               P+    +     +  S+ +   ALY+Y+  + ++L  ++G+ + V+E+  + W   
Sbjct: 4   GSPGPNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWK-A 62

Query: 135 SSQRSGCFGTFPGNYVERA 153
            S  +   G  P NYV R 
Sbjct: 63  RSLATRKEGYIPSNYVARV 81

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 48.2 bits (115), Expect = 3e-08
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR--IGTRRGIFPVT 69
                 +    A +++ A  H +LS  KG+ + ++      W++ R     + G  P  
Sbjct: 18 IREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSN 76

Query: 70 YVE 72
          YV 
Sbjct: 77 YVA 79

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 67.3 bits (165), Expect = 9e-16
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 99  YHALYNYKPQ-NDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           + A Y++    +  EL L++G+ VF+      GW +         G  P  Y+ 
Sbjct: 5   FEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMT 58

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 56.6 bits (137), Expect = 1e-11
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 21 QARAKFNFVAQTHL-ELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQSRA 77
          +  A ++F       EL L KG++V + R   + W   ++  G++ G  P  Y+      
Sbjct: 4  KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDT 63

Query: 78 TPSGAPV 84
            +  PV
Sbjct: 64 RNT-VPV 69

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 67.2 bits (165), Expect = 1e-15
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+Y  Q  DEL  +EG+T+ V +K   GW+ G    +G  G  P NYV+
Sbjct: 8   ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGE--LNGKRGWVPANYVQ 56

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 64.5 bits (158), Expect = 1e-14
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          Q +A +++ AQT  EL+  +G+ + + ++    W+EG +  +RG  P  YV+
Sbjct: 5  QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 56

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 67.3 bits (165), Expect = 1e-15
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 96  PVPYH--ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCF---GTFPGNYV 150
            VP+   A + YK   +D+L   + + + V    D  WY G  Q S      G FP ++V
Sbjct: 5   EVPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 64

Query: 151 E 151
            
Sbjct: 65  A 65

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 56.5 bits (137), Expect = 1e-11
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-----GTRRGIFPVTYVE 72
          +  A+F + +    +L+  K + + +    D  W+ G           GIFP ++V 
Sbjct: 9  KVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVA 65

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 67.2 bits (165), Expect = 1e-15
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           AL+++ PQ   EL  + G+ + ++ K D  W+ G        G FP NYV 
Sbjct: 7   ALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLN--NRRGIFPSNYVC 55

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 67.2 bits (165), Expect = 1e-15
 Identities = 23/52 (44%), Positives = 34/52 (65%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
            +A F+F  Q   EL+  +G+++TLI + D NW+EG++  RRGIFP  YV 
Sbjct: 4  FVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 68.8 bits (168), Expect = 1e-15
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQ-RSGCFGTFPGNYVE 151
            LY +K + DDEL++  GE + +    D  W++     R G  G  P +YV 
Sbjct: 8   TLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVR 59

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 66.5 bits (162), Expect = 1e-14
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 22  ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR---GIFPVTYVEQQSRAT 78
           A   + F A+   EL +  GE +++    D  WF  +   R    G+ PV+YV       
Sbjct: 6   AVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLMD 65

Query: 79  PSGAPVDQTLHIDTHSDPVPYHAL 102
           P+      T   +     +    +
Sbjct: 66  PAKYASVDTYDREQVMKIIDEFKI 89

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 67.7 bits (166), Expect = 1e-15
 Identities = 16/63 (25%), Positives = 30/63 (47%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
          +A+A  +F      EL   K +++T+I + D + + G +   RG FP  +VE     +  
Sbjct: 9  RAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKE 68

Query: 81 GAP 83
           + 
Sbjct: 69 YSI 71

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 67.3 bits (165), Expect = 1e-15
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           AL +++  +DDEL  R+ + + ++ + D+  +VG     G  G FP  +VE
Sbjct: 12  ALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELN--GLRGWFPAKFVE 60

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 67.4 bits (165), Expect = 1e-15
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
             ALY+Y+  +  EL LR  E  ++++  +  W+     ++G  G  P +Y+   S
Sbjct: 23  VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQD-KNGHEGYAPSSYLVEKS 77

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 59.7 bits (145), Expect = 1e-12
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVT 69
          R + ++  E    A +++      EL+L   E   L+   + +W+  +      G  P +
Sbjct: 12 RRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSS 71

Query: 70 YVEQQS 75
          Y+ ++S
Sbjct: 72 YLVEKS 77

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 67.3 bits (165), Expect = 1e-15
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
           S  +    LY ++ +N  EL + +GE + V++     W V +   +G  G  P N +E  
Sbjct: 5   SSGLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNE--AGRSGYIPSNILEPL 62

Query: 154 S 154
           S
Sbjct: 63  S 63

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 55.3 bits (134), Expect = 4e-11
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75
          + +  + F A+   EL++V+GE + ++      W       R G  P   +E  S
Sbjct: 9  KMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPLS 63

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 67.3 bits (165), Expect = 1e-15
 Identities = 12/55 (21%), Positives = 32/55 (58%)

Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           +    A +++  ++  E+++ KG+++TL+   + +W++  +  R+G  P  YV+
Sbjct: 4  GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 58

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 62.7 bits (153), Expect = 7e-14
 Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           ALY+Y+ ++  E+ +++G+ + ++   +  W+          G  P  YV++
Sbjct: 10  ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKK 59

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 66.8 bits (164), Expect = 1e-15
 Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           AL+++   ++++L  ++G+ + + +K ++ W+       G  G  P  YVE+
Sbjct: 6   ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSE-GKRGMIPVPYVEK 56

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 61.8 bits (151), Expect = 1e-13
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQ 73
            RA F+F      +L   KG+++ +  + +  W+       +RG+ PV YVE+
Sbjct: 3  YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 66.8 bits (164), Expect = 2e-15
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
            +A F+F  Q   EL   +G+ + ++   D NW++G    + G+FP  YV 
Sbjct: 4  YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 55

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 64.9 bits (159), Expect = 6e-15
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           AL+++ PQ D EL  R G+ + VM+  D  W+ G+    G  G FP NYV 
Sbjct: 7   ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYVT 55

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 66.7 bits (163), Expect = 2e-15
 Identities = 14/71 (19%), Positives = 25/71 (35%)

Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY 70
            +       +    F         L L KG+++ +I +     + G +  + G F   Y
Sbjct: 3  SGSSGFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIY 62

Query: 71 VEQQSRATPSG 81
          V+  S    SG
Sbjct: 63 VDVLSSGPSSG 73

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 64.7 bits (158), Expect = 1e-14
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           H  +   P + D L+L++G+ + ++ K   G ++G        GTF   YV+
Sbjct: 15  HTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLN--NKVGTFKFIYVD 64

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 66.4 bits (163), Expect = 2e-15
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 97  VPYHALYNYKPQNDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVE 151
           V Y   Y+Y   +DDEL +R GE +  ++K  ++GW  G     G  G FP N+V+
Sbjct: 2   VDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELN--GRRGMFPDNFVK 55

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 56.0 bits (136), Expect = 2e-11
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYVE 72
              ++++ A    EL++  GE++  ++++    W EG +  RRG+FP  +V+
Sbjct: 3  DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVK 55

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 67.1 bits (164), Expect = 2e-15
 Identities = 18/69 (26%), Positives = 30/69 (43%)

Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
          +        +A  K    A     L+L  G++V + R   N  +EG +  R+G+FP T+V
Sbjct: 11 STQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHV 70

Query: 72 EQQSRATPS 80
          +      P 
Sbjct: 71 KIFDPQNPD 79

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 62.1 bits (151), Expect = 2e-13
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
                   +   L L  G+ V V     +G + G     G  G FP  +V+
Sbjct: 23  QKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN--GRKGLFPFTHVK 71

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 66.5 bits (163), Expect = 2e-15
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRR-VDNNWFEGRIGTRRGIFPVTY 70
          +    +   +A AK++F A    ELS  +G+++ ++    D NW++  +  + G  P  Y
Sbjct: 2  SRRASVGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNY 61

Query: 71 VE 72
          +E
Sbjct: 62 IE 63

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 60.8 bits (148), Expect = 4e-13
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVE 151
           A Y++K   DDEL  + G+ + V+ + CD  WY       G  G  P NY+E
Sbjct: 14  AKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELN--GKDGFIPKNYIE 63

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 66.1 bits (162), Expect = 2e-15
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+++   D+EL  + GE + V++  D  W+ G +      G FP N+V 
Sbjct: 10  ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENH--RGTGLFPSNFVT 58

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 64.2 bits (157), Expect = 1e-14
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ 74
          + RA ++F A    EL+   GEL+T++   D NW++G      G+FP  +V   
Sbjct: 7  RVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTD 60

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 66.6 bits (163), Expect = 2e-15
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 13 APKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYV 71
                   ARA  ++       L   + +++T+  +   N WF G++  + G FPV +V
Sbjct: 4  LGSPEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHV 63

Query: 72 EQQSRATPSGAPV 84
          E      P   PV
Sbjct: 64 EILLSDVPPPQPV 76

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 62.0 bits (151), Expect = 2e-13
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE 151
           AL +Y   +   L  +  + + +  K   + W++G     G  G+FP ++VE
Sbjct: 15  ALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLN--GKEGSFPVDHVE 64

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 66.5 bits (163), Expect = 2e-15
 Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           AL+++   ++++L  ++G+ + + +K ++ W+       G  G  P  YVE+
Sbjct: 8   ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSE-GKRGMIPVPYVEK 58

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 60.7 bits (148), Expect = 3e-13
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQ 73
          S    RA F+F      +L   KG+++ +  + +  W+       +RG+ PV YVE+
Sbjct: 2  SAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 58

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 66.1 bits (162), Expect = 3e-15
 Identities = 11/55 (20%), Positives = 31/55 (56%)

Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           +      +++  ++  EL++ KG+++TL+   + +W++  +  R+G  P  Y++
Sbjct: 5  GKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLK 59

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 64.9 bits (159), Expect = 7e-15
 Identities = 11/51 (21%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
            LY+Y+ ++  EL +++G+ + ++   +  W+       G  G  P  Y++
Sbjct: 11  VLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVN--GRQGFVPAAYLK 59

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 66.2 bits (162), Expect = 3e-15
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           AL++YK Q +DEL   +   +  +EK + GW+ G          FP NYVE
Sbjct: 11  ALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY-GGKKQLWFPSNYVE 60

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 58.5 bits (142), Expect = 3e-12
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGI-FPVTYVE 72
            +A F++ AQ   EL+ +K  ++  + + +  W+ G  G ++ + FP  YVE
Sbjct: 8  AVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVE 60

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 66.3 bits (162), Expect = 3e-15
 Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 92  THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
              D      L +Y   +      R GE + V+      W    S  +G     PG  V 
Sbjct: 13  EGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEGGWWKAI-SLSTGRESYIPGICVA 71

Query: 152 RAS 154
           R S
Sbjct: 72  RVS 74

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 47.1 bits (112), Expect = 7e-08
 Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 13 APKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTY 70
           P+ L         ++ +         +GE + +I   +  W++    +  R    P   
Sbjct: 11 NPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRESYIPGIC 69

Query: 71 VEQQS 75
          V + S
Sbjct: 70 VARVS 74

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 66.1 bits (162), Expect = 3e-15
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
             A+Y+++     +L L  G+   ++EK D  W+     + G  G  P NYV    
Sbjct: 5   VVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARD-KYGSEGYIPSNYVTGKK 59

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 56.1 bits (136), Expect = 2e-11
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQS 75
            A ++F A    +L L +G+   ++ + D +W+  R      G  P  YV  + 
Sbjct: 5  VVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 67.0 bits (163), Expect = 5e-15
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQR-SGCFGTFPGNYVE 151
           A+YN++     +L L+ G+ V + E C D WY G   +     G FP +++ 
Sbjct: 64  AIYNFQGSGAPQLSLQIGDVVRIQETCGD-WYRGYLIKHKMLQGIFPKSFIH 114

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 56.2 bits (135), Expect = 6e-11
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 6   PYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEG---RIGTR 62
                 +      E    A +NF      +LSL  G++V  I+    +W+ G   +    
Sbjct: 46  SGSSGSSGSSGDKERHGVAIYNFQGSGAPQLSLQIGDVVR-IQETCGDWYRGYLIKHKML 104

Query: 63  RGIFPVTYVE 72
           +GIFP +++ 
Sbjct: 105 QGIFPKSFIH 114

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 65.3 bits (160), Expect = 5e-15
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 99  YHALYNYKPQNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVE 151
               Y++  ++ DEL ++ G+ V+++ +K    W++     SG  G  P  ++E
Sbjct: 5   GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 58

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 53.3 bits (129), Expect = 2e-10
 Identities = 10/55 (18%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLI-RRVDNNWFEGRIGT--RRGIFPVTYVE 72
          +   +++F+A++  EL++  G+ V ++  +   +W+  ++    + G+ P  ++E
Sbjct: 4  RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 58

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 65.3 bits (160), Expect = 5e-15
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE 151
           +  V   ALY+Y  Q  DEL  + G+ +  + + D  GW  G     G  G +P NYVE
Sbjct: 1   AKGVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDS-GQLGLYPANYVE 58

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 53.4 bits (129), Expect = 2e-10
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 18 SEG-QARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIGT-RRGIFPVTYVE 72
          ++G + RA +++  Q   ELS   G+ +T +   D   W  GR+ + + G++P  YVE
Sbjct: 1  AKGVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVE 58

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 65.4 bits (160), Expect = 5e-15
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+Y     DEL +  G+ + V  K ++ W+ GS  + G  G FP N+V 
Sbjct: 11  ALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGK-GQEGYFPANHVA 60

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 58.5 bits (142), Expect = 2e-12
 Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQS 75
             A +++ A    EL++ +G+++ +  + + +W+ G IG  + G FP  +V  ++
Sbjct: 8  TVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASET 63

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 66.0 bits (161), Expect = 6e-15
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           S    Y     Y+   D E+    G  V V+EK + GW+    +     G  P +Y+ 
Sbjct: 6   SGATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYV--RFGELEGWAPSHYLV 61

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 61.0 bits (148), Expect = 4e-13
 Identities = 11/67 (16%), Positives = 22/67 (32%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
                 +      E+S   G  V ++ + ++ W+  R G   G  P  Y+       P 
Sbjct: 10 SYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQPD 69

Query: 81 GAPVDQT 87
           +  +  
Sbjct: 70 PSGKESG 76

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 65.9 bits (161), Expect = 6e-15
 Identities = 13/63 (20%), Positives = 28/63 (44%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
           A A ++ V   + EL+   G+++ ++   + +W+ G+I    G FP ++V         
Sbjct: 12 SAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDE 71

Query: 81 GAP 83
             
Sbjct: 72 VEE 74

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 62.8 bits (153), Expect = 1e-13
 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 92  THSDPVPY-HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           +  D +    A++++    + EL  + G+ + V++  +  W+ G        G FP ++V
Sbjct: 5   SSGDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQID--DEEGWFPASFV 62

Query: 151 E 151
            
Sbjct: 63  R 63

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 64.9 bits (159), Expect = 6e-15
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           ARA ++F A    EL    GE+V ++   + +W+ GR+  + G+FP  YV 
Sbjct: 3  WARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 54

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 64.9 bits (159), Expect = 8e-15
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+++   +DEL  R GE V V++  +  W+ G        G FP NYV 
Sbjct: 6   ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLH--NKLGLFPANYVA 54

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 65.4 bits (160), Expect = 7e-15
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQ-RSGCFGTFPGNYVE 151
            +Y+ +  NDDEL   EGE + V  + D  W++G  + +    G FP ++V 
Sbjct: 15  TIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVH 66

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 65.4 bits (160), Expect = 8e-15
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI---GTRRGIFPV 68
          +        + +  ++  A    EL+ ++GE++ +    D  W+ G I     R+G+FPV
Sbjct: 3  SGSSGNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPV 62

Query: 69 TYVEQQSRATPS 80
          ++V   S + PS
Sbjct: 63 SFVHILSDSGPS 74

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 65.5 bits (160), Expect = 8e-15
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDD-GWYVGSSQRSGCFGTFPGNYVERAS 154
               +      EL  R+G+ V ++E C++  WY      SG  G      +   S
Sbjct: 22  TKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERS 76

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 60.9 bits (148), Expect = 5e-13
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 11 RTAPKKLSEG-QARAKFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEGRIGT--RRGIF 66
          R   ++ + G Q   K         EL+  KG++VT++    + +W+  +  T  + G+ 
Sbjct: 8  RMPTRRWAPGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLL 67

Query: 67 PVTYVEQQSRATPSG 81
              + ++S    SG
Sbjct: 68 AAGALRERS-GPSSG 81

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 64.5 bits (158), Expect = 1e-14
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           AL++YK Q +DEL   +   +  +EK D GW+ G          FP NYVE
Sbjct: 8   ALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDY-GGKKQLWFPSNYVE 57

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 57.2 bits (139), Expect = 7e-12
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGI-FPVTYVE 72
            +A F++ AQ   EL+  K  ++  + + D  W+ G  G ++ + FP  YVE
Sbjct: 5  AVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVE 57

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 64.8 bits (158), Expect = 1e-14
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 92  THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRS-------GCFGT 144
           + S    + AL++Y+ +  ++L  R G+ + V++   +GW++                G 
Sbjct: 3   SGSSGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGY 62

Query: 145 FPGNYVERAS 154
            P NYV   S
Sbjct: 63  IPSNYVAEDS 72

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 52.4 bits (126), Expect = 7e-10
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT---------RRGIFPV 68
          S     A F++ A+T  +LS   G+ + ++      W+  R             +G  P 
Sbjct: 6  SGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPS 65

Query: 69 TYVEQQS 75
           YV + S
Sbjct: 66 NYVAEDS 72

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 64.6 bits (158), Expect = 1e-14
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 4/53 (7%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVE 151
            ++ Y+ QNDDEL ++EG+ V ++ K   D GW+ G     G  G FP N+V+
Sbjct: 12  VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFVK 62

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 61.9 bits (151), Expect = 1e-13
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYVEQQSRAT 78
            +  F + AQ   EL++ +G++VTLI +  +D  W+EG +  RRG+FP  +V+  S   
Sbjct: 9  YCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLS-GP 67

Query: 79 PSG 81
           SG
Sbjct: 68 SSG 70

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 63.7 bits (156), Expect = 2e-14
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE 151
           A+Y Y+ Q DDE+ +  G+ + V+   D  GW  G     G  G FP +Y +
Sbjct: 5   AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECD--GLKGLFPTSYCK 54

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 57.9 bits (141), Expect = 3e-12
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNN-WFEGRIGTRRGIFPVTYVE 72
          G   A + + AQ   E+S+  G+++T+IR  D + W  G     +G+FP +Y +
Sbjct: 1  GAMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 64.3 bits (157), Expect = 2e-14
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKC---DDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+Y+ Q DDEL   EG  + ++ K    DDG++ G     G  G FP   VE
Sbjct: 13  ALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFN--GRIGVFPSVLVE 64

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 62.3 bits (152), Expect = 9e-14
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRR---VDNNWFEGRIGTRRGIFPVTYVEQQSRA 77
            +A +++  QT  ELS  +G ++ ++ +    D+ ++EG    R G+FP   VE+ S  
Sbjct: 10 FVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSG 69

Query: 78 TPSG 81
            SG
Sbjct: 70 PSSG 73

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 63.9 bits (156), Expect = 2e-14
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)

Query: 90  IDTHSDPVPY-HALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFP 146
           +D+ +    Y   ++ Y+ QNDDEL ++EG+ V ++ K   D GW+ G     G  G FP
Sbjct: 2   MDSRTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFP 59

Query: 147 GNYVE 151
            N+V+
Sbjct: 60  DNFVK 64

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 63.9 bits (156), Expect = 2e-14
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVT 69
             +  S+   +  F + AQ   EL++ +G++VTLI +  +D  W+EG +  RRG+FP  
Sbjct: 2  MDSRTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDN 61

Query: 70 YVE 72
          +V+
Sbjct: 62 FVK 64

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 63.8 bits (156), Expect = 2e-14
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 4/53 (7%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVE 151
            ++ Y+ QNDDEL ++EG+ V ++ K   D GW+ G     G  G FP N+V+
Sbjct: 7   VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFVK 57

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 61.9 bits (151), Expect = 1e-13
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYVE 72
            +  F + AQ   EL++ +G++VTLI +  +D  W+EG +  RRG+FP  +V+
Sbjct: 4  YCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 57

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 63.8 bits (156), Expect = 2e-14
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVERAS 154
            L+ Y   N+DEL  REGE + ++ K   + GW+ G     G  G FP N+  + S
Sbjct: 11  TLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELN--GKEGVFPDNFAVQIS 64

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 61.5 bits (150), Expect = 2e-13
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYVEQ 73
            R  F +      EL+  +GE++ LI +   +  W++G +  + G+FP  +  Q
Sbjct: 8  YCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQ 62

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 63.7 bits (156), Expect = 2e-14
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 97  VPYHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE 151
           +    LY Y  ++DDE+ +  G+ + ++ +    GW   ++  +G  G  P  Y+ 
Sbjct: 2   MENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 49.1 bits (118), Expect = 6e-09
 Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNN-WFEGRIGT--RRGIFPVTYVE 72
          + +  + +V +   E+++  G+ ++L+ R   + W +    T    G+ P TY+ 
Sbjct: 3  ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 64.3 bits (157), Expect = 2e-14
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
             ALY+Y   + D+L  ++G+ + V+E+  + W+   S  +   G  P NYV R  
Sbjct: 6   VVALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 60

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 48.9 bits (117), Expect = 2e-08
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 17 LSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR-GIFPVTYVE 72
          + +    A +++V+ +  +LS  KG+ + ++      W    + TR+ G  P  YV 
Sbjct: 1  MEDIIVVALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVA 57

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 63.8 bits (156), Expect = 3e-14
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKC---DDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+  P   DEL    G+ + ++E+     +GW+       G  G  P N ++
Sbjct: 12  ALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLH--GRQGLAPANRLQ 63

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 58.1 bits (141), Expect = 4e-12
 Identities = 11/55 (20%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRR---VDNNWFEGRIGTRRGIFPVTYVE 72
           ARA ++       EL+  +G+++T++ +       W++  +  R+G+ P   ++
Sbjct: 9  LARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQ 63

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 64.4 bits (157), Expect = 3e-14
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVE------ 72
            RA + F A+ H E+S   G+++ +  +   +  W  G      G FP  YVE      
Sbjct: 7  GYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSE 66

Query: 73 QQSRATPSGAPVDQTLHIDTHSDPVP 98
           +   +P  A +  T+ +   S P  
Sbjct: 67 NEKAVSPKKALLPPTVSLSATSGPSS 92

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 63.7 bits (155), Expect = 5e-14
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVE 151
           S    Y ALY ++ +N DE+    G+ + V EK   + GW  GS Q  G FG FP NYVE
Sbjct: 3   SGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQ--GNFGWFPCNYVE 60

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 63.9 bits (156), Expect = 3e-14
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 73  QQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWY 132
             S    +  P+ +        +     ALY+Y+  +  EL LR  E   +++  +  W+
Sbjct: 3   SGSSGEDNRRPLWEP-------EETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWW 55

Query: 133 VGSSQRSGCFGTFPGNYVERAS 154
                R+G  G  P +Y+   S
Sbjct: 56  RVQD-RNGHEGYVPSSYLVEKS 76

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 56.2 bits (136), Expect = 3e-11
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQS 75
          E    A +++      EL+L + E   L+   + +W+  +      G  P +Y+ ++S
Sbjct: 19 ETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKS 76

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 67.0 bits (163), Expect = 4e-14
 Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 7/140 (5%)

Query: 18  SEGQARAKFNFVAQTHLELSLVKGELVTLIR-RVDNN--WFEGRIGTRRGIFPVTYVEQQ 74
            +G    + +  A     LS+  G  V   +   D    +F   +        V Y    
Sbjct: 79  HDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRST 138

Query: 75  SRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVG 134
           S +      +           P    AL+++ PQ D EL  R G+ + VM+  D  W+ G
Sbjct: 139 SVSRNQ--QIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKG 196

Query: 135 SSQRSGCFGTFPGNYVERAS 154
           +    G  G FP NYV   +
Sbjct: 197 AC--HGQTGMFPRNYVTPVN 214

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 59.3 bits (143), Expect = 3e-11
 Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 5/138 (3%)

Query: 21  QARAKFNFVAQTHLELSLVKGELVTLIRR-VDNNWFEGRIGTRRGIFPVTYVEQQSRATP 79
           +A AK++F A    ELS  +G+++ ++    D NW++  +  + G  P  Y+E +     
Sbjct: 2   EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWF 61

Query: 80  SGAPVDQTLHIDTHSDPVPYHAL--YNYKPQNDDELELREGETV--FVMEKCDDGWYVGS 135
            G                    L   +     D  L ++ G  V  F + +   G Y   
Sbjct: 62  FGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLW 121

Query: 136 SQRSGCFGTFPGNYVERA 153
             +          +   +
Sbjct: 122 VVKFNSLNELVDYHRSTS 139

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 53.1 bits (127), Expect = 4e-09
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 97  VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           +   A Y++K   DDEL  + G+ + V+ +  D  +   ++ +G  G  P NY+E 
Sbjct: 1   MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWY-KAELNGKDGFIPKNYIEM 55

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 63.1 bits (154), Expect = 4e-14
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATP 79
           +A  K    A     L+L  G++V + R   N  +EG +  R+G+FP T+V+      P
Sbjct: 4  AKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNP 63

Query: 80 S 80
           
Sbjct: 64 D 64

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 60.4 bits (147), Expect = 5e-13
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 96  PVPYHALYNYKP--QNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           PV   A+    P   +   L L  G+ V V     +G + G     G  G FP  +V+
Sbjct: 1   PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN--GRKGLFPFTHVK 56

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 63.6 bits (155), Expect = 4e-14
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPV 68
                    +  A ++F  Q   +L+   G+ +T+I + D   +W+EG++  + GIFP 
Sbjct: 9  ERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPA 68

Query: 69 TYVEQQSRATP 79
           YV   S  + 
Sbjct: 69 NYVTMNSGPSS 79

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 62.4 bits (152), Expect = 1e-13
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDD--GWYVGSSQRSGCFGTFPGNYVE 151
           + P+   ALY+++ Q   +L  + G+ + V+ K D    W+ G  +  G  G FP NYV 
Sbjct: 15  NQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLR--GQTGIFPANYVT 72

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 63.1 bits (154), Expect = 5e-14
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           AL ++  + D+ L   + + + V+E+  + W+ G     G  G FP +YV+
Sbjct: 15  ALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVH--GGRGWFPKSYVK 62

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 60.8 bits (148), Expect = 4e-13
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE--QQSRAT 78
          +A+A  ++ A+    L+  K +++T++ +   NW+ G +   RG FP +YV+    S + 
Sbjct: 12 KAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGSESG 70

Query: 79 PS 80
          PS
Sbjct: 71 PS 72

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 62.6 bits (153), Expect = 5e-14
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPVTYVE 72
          S  +A A ++F  +   +L   KG+++T++++ D  N+W+ GR+  R GIFP  YVE
Sbjct: 2  SSPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 58

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 60.3 bits (147), Expect = 4e-13
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD--DGWYVGSSQRSGCFGTFPGNYVE 151
           ALY++  +   +L  R+G+ + +++K D  + W+ G     G  G FP NYVE
Sbjct: 8   ALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVN--GREGIFPANYVE 58

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 62.7 bits (153), Expect = 6e-14
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 91  DTHSDPVPYHALYNYKP--QNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGN 148
           +  + P+    +    P   +   L L  GE V V +    G + G     G  G FP  
Sbjct: 1   NLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECN--GKRGHFPFT 58

Query: 149 YVE 151
           +V 
Sbjct: 59  HVR 61

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 60.8 bits (148), Expect = 4e-13
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 22 ARAKFNFV--AQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          AR     V  A     L+L  GELV + +   +  +EG    +RG FP T+V 
Sbjct: 9  ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVR 61

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 63.2 bits (154), Expect = 7e-14
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 19 EGQARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYVEQQSR 76
           G   A  +++      LS  +G+L+ L+    ++  W  G  G R G+FP   V+  + 
Sbjct: 8  SGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAA 67

Query: 77 ATPSGAPVDQT 87
             S +   ++
Sbjct: 68 PDFSFSKEQRS 78

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 59.0 bits (143), Expect = 3e-12
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 101 ALYNYKPQNDDELELREGE--TVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           AL +Y   N   L    G+   +  +   + GW  GS+   G  G FP + V+ A+
Sbjct: 13  ALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAG--GRSGLFPADIVQPAA 66

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 62.7 bits (153), Expect = 8e-14
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
          +  A + + +    +L+  +GE + + ++ D  W+ G IG R GIFP  YV+ +     S
Sbjct: 10 EYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSGPSS 68

Query: 81 G 81
          G
Sbjct: 69 G 69

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 61.5 bits (150), Expect = 2e-13
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           Y ALY Y      +L   EGE + V +K D  W+ GS       G FP NYV+
Sbjct: 11  YIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIG--DRSGIFPSNYVK 60

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 62.3 bits (152), Expect = 9e-14
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 99  YHALYNYKPQNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVE 151
               Y++  ++ DEL ++ G+ V+++ +K    W++     SG  G  P  ++E
Sbjct: 9   GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 62

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 53.4 bits (129), Expect = 2e-10
 Identities = 11/58 (18%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLI-RRVDNNWFEGRIGT--RRGIFPVTYVE 72
          S+ +   +++F+A++  EL++  G+ V ++  +   +W+  ++    + G+ P  ++E
Sbjct: 5  SKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 62

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 62.3 bits (152), Expect = 1e-13
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDD-GWYVGSSQRSGCFGTFPGNYVE 151
           ALY  K ++D EL    G     +    + GW  G+    G  G  P NYVE
Sbjct: 15  ALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLN--GKTGLIPENYVE 64

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 59.6 bits (145), Expect = 1e-12
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRR-VDNNWFEGRIGTRRGIFPVTY 70
          +        +A+A +   A+   ELS   G +   +    +  W EG +  + G+ P  Y
Sbjct: 3  SGSSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENY 62

Query: 71 VE 72
          VE
Sbjct: 63 VE 64

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 62.3 bits (152), Expect = 1e-13
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDD-GWYVGSSQRSGCFGTFPGNYVERA 153
           A YN+    + +L   +G+ + ++    D  WY     + G  G  P NYV++ 
Sbjct: 16  AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKA-KNKVGREGIIPANYVQKR 68

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 58.4 bits (142), Expect = 2e-12
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDN-NWFEGRIGT-RRGIFPVTYVEQQ 74
          +  AK+NF      +L   KG+++T++    + NW++ +    R GI P  YV+++
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR 68

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 62.0 bits (151), Expect = 1e-13
 Identities = 11/61 (18%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRS------GCFGTFPGNYVER 152
             ALY+Y+ ++  E+ +++G+ + ++   +  W+    + +         G  P  YV++
Sbjct: 4   VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKK 63

Query: 153 A 153
            
Sbjct: 64  L 64

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 52.0 bits (125), Expect = 7e-10
 Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 8/62 (12%)

Query: 19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNW--------FEGRIGTRRGIFPVTY 70
          +    A +++  ++  E+++ KG+++TL+   + +W          G+   R+G  P  Y
Sbjct: 1  KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAY 60

Query: 71 VE 72
          V+
Sbjct: 61 VK 62

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 61.6 bits (150), Expect = 2e-13
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
           A     + A    E+++ KG+++TL+   + +W++  +  R+G  P  YV++    T  
Sbjct: 2  GAPPLPPYSAGGR-EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGK 60

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 51.6 bits (124), Expect = 1e-09
 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
            L  Y      E+ +++G+ + ++   +  W+    + +   G  P  YV++
Sbjct: 5   PLPPYSAGGR-EVTMKKGDILTLLNSTNKDWWKV--EVNDRQGFVPAAYVKK 53

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 61.5 bits (150), Expect = 2e-13
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE 151
           S      A+Y+++  ++  + + EGE + +ME+   DGW     +  G  G  P +Y+ 
Sbjct: 5   SSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKE-GGEGYVPTSYLR 62

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 55.4 bits (134), Expect = 4e-11
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 13 APKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRR-VDNNWFEGRIGT-RRGIFPVTY 70
               S G   A ++F   +   +S+ +GE ++L+     + W   R      G  P +Y
Sbjct: 1  GSSGSSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSY 60

Query: 71 VEQQSRAT 78
          +   S  +
Sbjct: 61 LRVTSGPS 68

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 61.2 bits (149), Expect = 3e-13
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE 151
           + P+    +Y+YK    DEL + E E + V+E  D + W    ++  G  G  P  Y++
Sbjct: 11  NYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKV-GQVGYVPEKYLQ 68

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 56.6 bits (137), Expect = 2e-11
 Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDN-NWFEGRIGT-RRGIFPVT 69
          +   +      +  +++ A    EL++ + E++ +I   D  +W + R    + G  P  
Sbjct: 6  SGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEK 65

Query: 70 YVEQQSRATPSGA 82
          Y++  + + PS  
Sbjct: 66 YLQFPTSSGPSSG 78

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 60.8 bits (148), Expect = 3e-13
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD---DGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+   ++ DEL  R+G+ + V+E+     DGW++ S    G  G  PGN ++
Sbjct: 8   ALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLH--GRQGIVPGNRLK 59

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 58.5 bits (142), Expect = 3e-12
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNN---WFEGRIGTRRGIFPVTYVEQQSRAT 78
          A+A ++ VA++  ELS  KG+++T++ +       W+   +  R+GI P   ++      
Sbjct: 6  AKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMY 65

Query: 79 P 79
           
Sbjct: 66 D 66

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 66.3 bits (160), Expect = 3e-13
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 72  EQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDD-G 130
                +T +    +      T    V   ALY+Y+ Q  DEL  + G+ +  ME  D+ G
Sbjct: 404 NNPFSSTDANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQG 463

Query: 131 WYVGSSQRSGCFGTFPGNYVE 151
           W  G     G  G +P NYVE
Sbjct: 464 WCKGRLDN-GQVGLYPANYVE 483

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 50.9 bits (120), Expect = 5e-08
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 6   PYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIGT-RR 63
             +         +E + RA +++  Q H ELS   G+ +T +   D   W +GR+   + 
Sbjct: 415 DSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQV 474

Query: 64  GIFPVTYVE 72
           G++P  YVE
Sbjct: 475 GLYPANYVE 483

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 60.7 bits (148), Expect = 4e-13
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
           ++ V   A ++Y  Q D EL++++ E +++++     W V ++  +   G  P NYVER 
Sbjct: 2   TEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNA--ANRTGYVPSNYVERK 59

Query: 154 S 154
            
Sbjct: 60  L 60

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 49.2 bits (118), Expect = 8e-09
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 17 LSEGQ-ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQ 74
          ++E     AK+++ AQ   EL + K E + L+      W+  R    R G  P  YVE++
Sbjct: 1  MTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKT-WWRVRNAANRTGYVPSNYVERK 59

Query: 75 S 75
           
Sbjct: 60 L 60

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 61.3 bits (149), Expect = 4e-13
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDD----GWYVGSSQRSGCFGTFPGNY 149
            D V   A Y++   +D+E+  R G+ + +  K       GW + S       G  P NY
Sbjct: 15  DDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASL-DGQTTGLIPANY 73

Query: 150 VE 151
           V+
Sbjct: 74  VK 75

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 52.5 bits (126), Expect = 9e-10
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD----NNWFEGRI-GTRRGIFPVTYVEQQS 75
           ARA+++FVA +  E+S   G+++ L  +        W    + G   G+ P  YV+   
Sbjct: 19 VARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILG 78

Query: 76 RATPSGAPVDQ 86
          +          
Sbjct: 79 KRRGRKTIESG 89

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 61.0 bits (148), Expect = 5e-13
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 78  TPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQ 137
             +       +     ++ V   A ++Y  Q D EL++++ E +++++     W V ++ 
Sbjct: 13  DYNSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNA- 71

Query: 138 RSGCFGTFPGNYVER 152
            +   G  P NYVER
Sbjct: 72  -ANRTGYVPSNYVER 85

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 49.4 bits (118), Expect = 1e-08
 Identities = 17/62 (27%), Positives = 25/62 (40%)

Query: 13 APKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
                E    AK+++ AQ   EL + K E + L+      W       R G  P  YVE
Sbjct: 25 NLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVE 84

Query: 73 QQ 74
          ++
Sbjct: 85 RK 86

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 60.5 bits (147), Expect = 6e-13
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 94  SDPVPYHALYNYKPQN-------DDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTF 145
           S      ALY+Y P+        + EL    G+ + V  + D DG+Y G    +G  G  
Sbjct: 5   SSGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGE--LNGQKGLV 62

Query: 146 PGNYVERAS 154
           P N++E  S
Sbjct: 63  PSNFLEEVS 71

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 53.9 bits (130), Expect = 2e-10
 Identities = 11/63 (17%), Positives = 32/63 (50%), Gaps = 8/63 (12%)

Query: 21 QARAKFNFVAQTHL-------ELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYVE 72
          +  A +++  +          EL+   G+++T+   +D + ++ G +  ++G+ P  ++E
Sbjct: 9  RMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLE 68

Query: 73 QQS 75
          + S
Sbjct: 69 EVS 71

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 63.9 bits (154), Expect = 6e-13
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 13/99 (13%)

Query: 67  PVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVM-- 124
            V      +                         A ++Y   + DEL+L+ G+ V V+  
Sbjct: 113 VVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPF 172

Query: 125 ---EKCDDGWYVGSSQRS--------GCFGTFPGNYVER 152
              E+ D+GW +G  +           C G FP N+ ER
Sbjct: 173 QNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTER 211

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 60.1 bits (146), Expect = 7e-13
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 101 ALYNYKPQ-NDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVE 151
            ++ +    N   L   +G+ + ++     DGW  G    +   G FP +Y +
Sbjct: 12  TIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 50.0 bits (120), Expect = 5e-09
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 21 QARAKFNFVAQTHL-ELSLVKGELVT-LIRRVDNNWFEGRIGT--RRGIFPVTYVE 72
          + +  F   A  +   LS  +G+++T LI    + W  G   T   RG FP +Y +
Sbjct: 9  KVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 59.9 bits (146), Expect = 7e-13
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDG-WYVGSSQRSGCFGTFPGNYVER 152
           +DP  + ALY++    D+ L + +GE + V+    +G W    +      G  P  Y+  
Sbjct: 3   NDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT--KNGQGWVPSAYITP 60

Query: 153 A 153
            
Sbjct: 61  V 61

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 51.8 bits (125), Expect = 7e-10
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRR-VDNNWFEGRIGTRRGIFPVTYVE 72
           A ++FVA     LS+ KGE + ++    +  W E +    +G  P  Y+ 
Sbjct: 9  VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYIT 59

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 60.7 bits (147), Expect = 8e-13
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 99  YHALYNYKPQ------NDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE 151
             A Y+Y P        + EL L  G+ ++V    D DG+Y G     G  G  P N+V+
Sbjct: 20  CVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLD-GQRGLVPSNFVD 78

Query: 152 RAS 154
              
Sbjct: 79  FVQ 81

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 46.0 bits (109), Expect = 3e-07
 Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 13 APKKLSEGQARAKFNFVAQT------HLELSLVKGELVTLIRRVD-NNWFEGRIGT-RRG 64
                     A++++            EL L  G+ + +   +D + ++EG +   +RG
Sbjct: 11 QRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRG 70

Query: 65 IFPVTYVEQQSRATPSGAP 83
          + P  +V+         A 
Sbjct: 71 LVPSNFVDFVQDNESRLAS 89

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 59.6 bits (145), Expect = 1e-12
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 101 ALYNYKP-QNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVE 151
            ++ +    N   L   +G+ + ++  +  DGW  G    S   G FP +Y +
Sbjct: 11  TIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTK 63

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 52.3 bits (126), Expect = 5e-10
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 21 QARAKFNFVAQT-HLELSLVKGELVT-LIRRVDNNWFEGRI--GTRRGIFPVTYVE 72
          + +  F   A +    LS  +G+++T LI    + W  G       RG FP +Y +
Sbjct: 8  KVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTK 63

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 59.2 bits (144), Expect = 1e-12
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 92  THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           T ++ V   A ++Y  Q + EL++++ E +++++     W V +S      G  P NYVE
Sbjct: 3   TMAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNS--MNKTGFVPSNYVE 60

Query: 152 RAS 154
           R +
Sbjct: 61  RKN 63

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 47.7 bits (114), Expect = 4e-08
 Identities = 18/63 (28%), Positives = 28/63 (44%)

Query: 13 APKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
                E    AKF++VAQ   EL + K E + L+    + W       + G  P  YVE
Sbjct: 1  GSTMAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVE 60

Query: 73 QQS 75
          +++
Sbjct: 61 RKN 63

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 59.3 bits (144), Expect = 2e-12
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 10/70 (14%)

Query: 94  SDPVPYHALYNYKPQN-------DDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTF 145
           S      A  +Y P +          L LR G+ V V    D  G+Y G     G  G  
Sbjct: 5   SSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELG--GHRGLV 62

Query: 146 PGNYVERASL 155
           P + ++  SL
Sbjct: 63  PAHLLDHMSL 72

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 47.8 bits (114), Expect = 3e-08
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 8/63 (12%)

Query: 21 QARAKFNFVAQTHL-------ELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYVE 72
             A  ++              L+L  G++V +   +D   ++ G +G  RG+ P   ++
Sbjct: 9  IMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLD 68

Query: 73 QQS 75
            S
Sbjct: 69 HMS 71

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 58.8 bits (143), Expect = 2e-12
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVER 152
            LY +    ++EL   +GET+ V+EK   D  W+   + R G  G  P NYV  
Sbjct: 11  TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR-GQVGLVPKNYVVV 63

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 52.3 bits (126), Expect = 7e-10
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGT-RRGIFPVTYVEQQSRAT 78
           +  + F + T  EL+  KGE + +I +   D  W++ +    + G+ P  YV   S   
Sbjct: 9  VQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGP 68

Query: 79 PS 80
            
Sbjct: 69 AL 70

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 59.4 bits (144), Expect = 2e-12
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERAS 154
            LY +    ++EL   +GET+ V+EK   D  W+   + R G  G  P NYV   S
Sbjct: 22  TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR-GQVGLVPKNYVVVLS 76

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 54.8 bits (132), Expect = 1e-10
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGT-RRGIFPVTYVEQQSRA 77
            +  + F + T  EL+  KGE + +I +   D  W++ +    + G+ P  YV   S  
Sbjct: 19 VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG 78

Query: 78 TPSGAP 83
                
Sbjct: 79 PALHPA 84

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 58.5 bits (142), Expect = 2e-12
 Identities = 12/46 (26%), Positives = 27/46 (58%)

Query: 35 ELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
          E+++ KG+++TL+   + +W++  +  R+G  P  YV++    T  
Sbjct: 5  EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGK 50

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 45.8 bits (109), Expect = 1e-07
 Identities = 7/43 (16%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 110 DDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
             E+ +++G+ + ++   +  W+          G  P  YV++
Sbjct: 3   PREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKK 43

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 58.9 bits (143), Expect = 2e-12
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCD----DGWYVGSSQRSGCFGTFPGNYVERAS 154
           Y A+Y +K +N +EL +   + + ++E  D      W++      G  G  P NY+ +  
Sbjct: 16  YFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVN--GKKGYVPSNYIRKTE 73

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 57.0 bits (138), Expect = 1e-11
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 14 PKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD----NNWFEGRIGTRRGIFPVT 69
           +        A + F A+   ELS+   + + ++   D      W+   +  ++G  P  
Sbjct: 8  SEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSN 67

Query: 70 YVEQQSRATPSG 81
          Y+ +      SG
Sbjct: 68 YIRKTESGPSSG 79

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 58.9 bits (143), Expect = 2e-12
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 101 ALYNYKPQ-NDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVE 151
            +Y++  +  ++EL + EGE + V       GW  G + + G  G  P +YVE
Sbjct: 14  VMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNK-GEQGLVPTDYVE 65

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 56.6 bits (137), Expect = 2e-11
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 12 TAPKKLSEGQARAKFNFVAQTH-LELSLVKGELVTLIRR-VDNNWFEGRIGT-RRGIFPV 68
          ++       +AR  ++F A+    EL++ +GE++T+    V   W EG+     +G+ P 
Sbjct: 2  SSGSSGMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPT 61

Query: 69 TYVEQQSRATPS 80
           YVE        
Sbjct: 62 DYVEILPNDGKD 73

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 58.3 bits (141), Expect = 6e-12
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 12/82 (14%)

Query: 81  GAPVDQTLHIDTHSDPVP-YHALYNYKPQN--------DDELELREGETVFVMEKCD-DG 130
           G+             P   + AL++Y P          ++EL  +EG+ + V    D DG
Sbjct: 1   GSSGSSGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADG 60

Query: 131 WYVGSSQRSGCFGTFPGNYVER 152
           +Y G +      G  P N V  
Sbjct: 61  FYRGETC--ARLGLIPCNMVSE 80

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 9/84 (10%)

Query: 11 RTAPKKLSEGQARAKFNFVAQTHL--------ELSLVKGELVTLIRRVD-NNWFEGRIGT 61
              ++L      A F++   T          EL   +G+++ +    D + ++ G    
Sbjct: 9  DPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCA 68

Query: 62 RRGIFPVTYVEQQSRATPSGAPVD 85
          R G+ P   V +            
Sbjct: 69 RLGLIPCNMVSEIQADDEEMMDQS 92

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 57.8 bits (140), Expect = 6e-12
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 7/57 (12%)

Query: 101 ALYNYKPQNDD-ELELREGETVFVMEKCD-----DGWYVGSSQRSGCFGTFPGNYVE 151
           ALY++ P+N + E+ L++G+ + ++ K D       W+   + ++G  G  P NY+E
Sbjct: 12  ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNYIE 67

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 13 APKKLSEGQARAKFNFVAQTH-LELSLVKGELVTLIRRVD-----NNWFEGRIGT-RRGI 65
                   ARA ++FV +   +E++L KG+L+ ++ + D     ++W++ R      G 
Sbjct: 1  GSHHHHHHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGY 60

Query: 66 FPVTYVE 72
           P  Y+E
Sbjct: 61 IPYNYIE 67

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 60.1 bits (145), Expect = 8e-12
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRS-GCFGTFPGNYVE 151
           A+YN++     +L L+ G+ V + E C D WY G   +     G FP +++ 
Sbjct: 22  AIYNFQGSGAPQLSLQIGDVVRIQETCGD-WYRGYLIKHKMLQGIFPKSFIH 72

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 47.4 bits (112), Expect = 4e-07
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI---GTRRGIFPVTYVE 72
          E    A +NF      +LSL  G++V  I+    +W+ G +      +GIFP +++ 
Sbjct: 17 ERHGVAIYNFQGSGAPQLSLQIGDVVR-IQETCGDWYRGYLIKHKMLQGIFPKSFIH 72

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 56.9 bits (138), Expect = 9e-12
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
             Y+++ +N  EL +++ + + V++     W V     +G  G  P N + 
Sbjct: 13  CNYDFQARNSSELSVKQRDVLEVLDDSRKWWKVRD--PAGQEGYVPYNILT 61

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 48.1 bits (115), Expect = 2e-08
 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVE 72
              ++F A+   ELS+ + +++ ++      W++ R    + G  P   + 
Sbjct: 11 VLCNYDFQARNSSELSVKQRDVLEVLDD-SRKWWKVRDPAGQEGYVPYNILT 61

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 57.9 bits (140), Expect = 9e-12
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 7/57 (12%)

Query: 101 ALYNYKPQNDD-ELELREGETVFVMEKCD-----DGWYVGSSQRSGCFGTFPGNYVE 151
           ALY++ P+N + E+ L++G+ + ++ K D       W+   + ++G  G  P NY+E
Sbjct: 19  ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNYIE 74

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 53.7 bits (129), Expect = 3e-10
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 21 QARAKFNFVAQTH-LELSLVKGELVTLIRRVD-----NNWFEGRIGT-RRGIFPVTYVEQ 73
           ARA ++FV +   +E++L KG+L+ ++ + D     ++W++ R      G  P  Y+E 
Sbjct: 16 FARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 75

Query: 74 QSRATPSGAPVDQT 87
            R        D+T
Sbjct: 76 IKRRKKIEHVDDET 89

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 57.2 bits (138), Expect = 9e-12
 Identities = 13/67 (19%), Positives = 33/67 (49%)

Query: 30 AQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGAPVDQTLH 89
          A    E+++ KG+++TL+   + +W++  +  R+G  P  YV++    T     +    +
Sbjct: 2  AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDY 61

Query: 90 IDTHSDP 96
           ++  + 
Sbjct: 62 QESGDNA 68

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 49.5 bits (118), Expect = 1e-08
 Identities = 7/45 (15%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 108 QNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
               E+ +++G+ + ++   +  W+          G  P  YV++
Sbjct: 3   MGPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKK 45

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 57.0 bits (138), Expect = 1e-11
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 7/57 (12%)

Query: 101 ALYNYKPQNDD-ELELREGETVFVMEKCD-----DGWYVGSSQRSGCFGTFPGNYVE 151
           ALY++ P+N + E+ L++G+ + ++ K D       W+   + ++G  G  P NY+E
Sbjct: 19  ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNYIE 74

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 51.3 bits (123), Expect = 2e-09
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 7/59 (11%)

Query: 21 QARAKFNFVAQTH-LELSLVKGELVTLIRRVD-----NNWFEGRIGT-RRGIFPVTYVE 72
           ARA ++FV +   +E++L KG+L+ ++ + D     ++W++ R      G  P  Y+E
Sbjct: 16 FARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 74

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 101 ALYNYKPQND-DELELREGETVFVMEKCDDGWY----VGSSQRSGCFGTFPGNYVE 151
           AL ++   +D   L +R G+ + V+E+  DG +      S + +   G FP   VE
Sbjct: 23  ALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVE 78

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 50.6 bits (121), Expect = 4e-09
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 21 QARAKFNFVAQT-HLELSLVKGELVTLIRRVDNNWFEGRI------GTRRGIFPVTYVE 72
          + RA  +F        L++  G+++T++ +  +  ++G I        R G FP   VE
Sbjct: 20 KVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVE 78

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 55.7 bits (135), Expect = 3e-11
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           + Y++  +N  EL + + + + +++     W V +   SG  G  P N ++
Sbjct: 6   SKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRN--ASGDSGFVPNNILD 54

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 48.8 bits (117), Expect = 1e-08
 Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVE 72
          A++K++FVA+   ELS++K +++ ++      W++ R  +   G  P   ++
Sbjct: 4  AKSKYDFVARNSSELSVMKDDVLEILDDRR-QWWKVRNASGDSGFVPNNILD 54

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 55.2 bits (133), Expect = 5e-11
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVG--SSQRSGCFGTFPGNYVER 152
           Y ++ +Y+   ++    +EG ++ V+E+  +GW+            G  P NY+E+
Sbjct: 13  YVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEK 67

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 47.5 bits (113), Expect = 4e-08
 Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI----GTRRGIFP 67
          +      +    +  ++           +G  + ++ R  N W+  +I       +G  P
Sbjct: 3  SGSSGNLKDVYVSIADYEGDEE-TAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVP 61

Query: 68 VTYVEQQSRATPSG 81
            Y+E+++    SG
Sbjct: 62 SNYLEKKNSGPSSG 75

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 53.9 bits (130), Expect = 2e-10
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 101 ALYNYKPQNDD--ELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY Y   +DD  E+   + E + V +  +  W+       G  G  P NYV+
Sbjct: 10  ALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRAN-GETGIIPSNYVQ 60

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 47.7 bits (114), Expect = 3e-08
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 21 QARAKFNFVAQ--THLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQSRA 77
          +A+A + + A      E+S  + E++  +  ++  W++ R      GI P  YV+     
Sbjct: 7  KAKALYPYDADDDDAYEISFEQNEILQ-VSDIEGRWWKARRANGETGIIPSNYVQLIDGP 65

Query: 78 TPS 80
             
Sbjct: 66 EEM 68

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 53.2 bits (128), Expect = 2e-10
 Identities = 13/74 (17%), Positives = 32/74 (43%), Gaps = 16/74 (21%)

Query: 62  RRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETV 121
           R+G  P  YV+                 +D+ +      ALY+Y+ ++  E+ +++G+ +
Sbjct: 3   RQGFVPAAYVK----------------KLDSGTGKELVLALYDYQEKSPREVTMKKGDIL 46

Query: 122 FVMEKCDDGWYVGS 135
            ++   +  W+   
Sbjct: 47  TLLNSTNKDWWKVE 60

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 46.6 bits (111), Expect = 7e-08
 Identities = 8/58 (13%), Positives = 29/58 (50%)

Query: 2  SSIIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI 59
             +P   ++       +    A +++  ++  E+++ KG+++TL+   + +W++  +
Sbjct: 4  QGFVPAAYVKKLDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 61

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 54.5 bits (130), Expect = 1e-09
 Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 85  DQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGT 144
             +  I    +     AL+++   ++++L  ++G+ + + +K ++ W+       G  G 
Sbjct: 125 QGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRGM 183

Query: 145 FPGNYVE 151
            P  YVE
Sbjct: 184 IPVPYVE 190

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 53.4 bits (127), Expect = 4e-09
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 21  QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVE------Q 73
             RA F+F      +L   KG+++ +  + +  W+       +RG+ PV YVE       
Sbjct: 138 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASA 197

Query: 74  QSRATPSGAPVDQTLHIDTHSDPVPY 99
              A   G             +P PY
Sbjct: 198 SVSALIGGNQEGSHPQPLGGPEPGPY 223

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
           ALY+Y+ + + +L  ++GE + ++   +  W++  S  +G  G  P NYV
Sbjct: 7   ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 41.7 bits (98), Expect = 7e-05
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSR 76
          A +++ ++T  +LS  KGE + ++   + +W+     +  + G  P  YV     
Sbjct: 7  ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS 61

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 67  PVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEK 126
              +  Q           +  L   + +DP  + ALY++    D+ L + +GE + V+  
Sbjct: 14  ASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGY 73

Query: 127 CDDGWYVGSSQRSGCFGTFPGNYVERAS 154
             +G +   +Q     G  P NY+   +
Sbjct: 74  NHNGEWC-EAQTKNGQGWVPSNYITPVN 100

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 6  PYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEGRIGTRRG 64
            + +   P +       A ++FVA     LS+ KGE + ++    +  W E +    +G
Sbjct: 30 SKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQG 89

Query: 65 IFPVTYV 71
            P  Y+
Sbjct: 90 WVPSNYI 96

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 54.2 bits (130), Expect = 4e-09
 Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 2/117 (1%)

Query: 18  SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA 77
           S   A A ++ V     EL    G+++ ++   +  W+ GR+    G FP ++V  +   
Sbjct: 29  SVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQ 88

Query: 78  TPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFV--MEKCDDGWY 132
                            D          + + +   E+   E  ++  +    +G+ 
Sbjct: 89  DEPADDDAPLAGNSGAEDGGAEAQSSKDQMRTNVINEILSTERDYIKHLRDICEGYV 145

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 75  SRATPSGAPVDQTLHIDTHSDPVPY--HALYNYKPQNDDELELREGETVFVMEKCDDGWY 132
              +  G   +Q    +  SD       AL+++   +D EL  + G+ + VM+  +  W+
Sbjct: 7   HHYSHPGGGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWW 66

Query: 133 VGSSQRSGCFGTFPGNYVERASLALRWVENASKL 166
            G        G FP ++V          ++ + L
Sbjct: 67  WGRVA--DGEGWFPASFVRLRVNQDEPADDDAPL 98

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 53.1 bits (128), Expect = 7e-09
 Identities = 12/56 (21%), Positives = 25/56 (44%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
             A YN+    + +L   +G+ + ++    D  +  +  + G  G  P NYV++  
Sbjct: 14  CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 69

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEGRIGT-RRGIFPVTYVEQQS 75
          S  +  AK+NF      +L   KG+++T++    D NW++ +    R GI P  YV+++ 
Sbjct: 10 SGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 69

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
             ALY+Y+  + ++L  ++G+ + V+E+    W+   S  +   G  P NYV R  
Sbjct: 11  VVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVD 65

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 1/99 (1%)

Query: 57  GRIGTRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVP-YHALYNYKPQNDDELEL 115
           G  G      P     +      S   V         +  V  + ALY+Y+ + + +L  
Sbjct: 45  GHRGPSAAFAPAAAEPKLFGGFNSSDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSF 104

Query: 116 REGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           ++GE + ++   +  W++  S  +G  G  P NYV  + 
Sbjct: 105 KKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 143

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 11  RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR--IGTRRGIFPV 68
           R  P         A +++ ++T  +LS  KGE + ++   + +W+        + G  P 
Sbjct: 77  RAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPS 136

Query: 69  TYVEQQS 75
            YV    
Sbjct: 137 NYVAPSD 143

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 18/75 (24%), Positives = 38/75 (50%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
          Q    +++ AQ   EL+  KG+++ ++ + D +W++G +  + G+FP  YV+  +   PS
Sbjct: 4  QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPS 63

Query: 81 GAPVDQTLHIDTHSD 95
                   +D  + 
Sbjct: 64 QQWCSDLHLLDMLTP 78

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLALRWV 160
            +Y+Y  QNDDEL   +G+ + V+ K D  W+ G    SG  G FP NYV+  +      
Sbjct: 7   GMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGE--VSGQVGLFPSNYVKLTTDMDPSQ 64

Query: 161 ENAS 164
           +  S
Sbjct: 65  QWCS 68

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 48.5 bits (115), Expect = 1e-07
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNY 149
           AL++Y+P +D +L   +GE + ++E+    W+   S  +G  G  P N+
Sbjct: 17  ALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNF 64

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 45.4 bits (107), Expect = 3e-07
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVE 151
           Y+ +          L L  G+ V + +   +  W+ G +  +   G FP N V 
Sbjct: 21  YYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 74

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 92

 Score = 45.0 bits (106), Expect = 5e-07
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 90  IDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDG-----WYVGSSQRSGCFGT 144
           +  +     + A  N+    D ++ L EG+ V V++K D       W +         G 
Sbjct: 11  LARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLI---DNGVTKGF 67

Query: 145 FPGNYVE 151
              ++++
Sbjct: 68  VYSSFLK 74

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 92

 Score = 44.2 bits (104), Expect = 1e-06
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVD----NNWFEGRIGTRRGIFPVTYVEQQSRA 77
          +A+ NF A   L++SL++G+LV +I++ D     N +    G  +G    ++++  +  
Sbjct: 21 QAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPR 79

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 42.6 bits (100), Expect = 2e-06
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 98  PYHALYNYKPQNDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVE 151
            Y+ +          L L  G+ V + +   +  W+ G +  +   G FP N V 
Sbjct: 12  EYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A Length = 108

 Score = 42.7 bits (100), Expect = 5e-06
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 9/60 (15%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKC---DDGWYVGS------SQRSGCFGTFPGNYVE 151
           AL +Y   +   L +  G+ V+V  K       ++ GS         +   G FP + V 
Sbjct: 27  ALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVR 86

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A Length = 108

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 13/86 (15%)

Query: 8  DKIRTAPKKLSE--GQARAKFNFVAQTHLELSLVKGELVTL---IRRVDNNWFEGRIGT- 61
          D+   A ++ S     A A  +++A     L++ +G++V +   ++     ++ G +   
Sbjct: 9  DRKLCADQECSHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGD 68

Query: 62 -------RRGIFPVTYVEQQSRATPS 80
                 R G FP + V +     P 
Sbjct: 69 YYGDLAARLGYFPSSIVREDQTLKPG 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	191
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.91
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.89
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.86
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.84
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	99.73
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.67
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.63
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.6
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.57
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.54
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.5
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.48
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.48
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.45
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.45
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.45
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.45
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.44
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.44
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.44
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.44
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.44
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.44
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.44
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.43
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.43
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.43
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.43
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.43
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.43
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.43
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.43
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.43
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.43
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.43
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.42
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.42
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.42
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.42
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.42
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.42
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.42
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.42
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.42
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.42
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.42
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.42
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.42
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.42
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.42
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.42
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.42
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.41
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.41
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.41
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.41
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.41
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.41
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.41
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.41
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.41
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.41
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.41
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.41
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.41
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.41
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.41
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.41
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.4
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.4
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.4
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.4
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.4
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.4
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.4
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.4
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.4
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.4
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.4
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.4
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.4
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.4
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.4
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.4
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.4
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.4
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.4
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.4
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.4
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.4
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.4
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.4
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.4
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.4
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.39
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.39
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.39
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.39
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.39
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.39
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.39
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.39
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.39
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.39
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.39
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.39
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.39
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.39
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.39
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.39
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.39
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.38
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.38
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.38
3u23_A	65	CD2-associated protein; structural genomics, struc	99.38
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.38
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.38
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.38
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.38
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.38
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.38
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.38
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.38
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.38
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.38
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.38
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.38
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.37
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.37
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.37
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.37
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.37
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.37
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.37
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.37
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.37
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.37
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.37
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.37
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.37
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.37
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.37
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.37
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.37
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.37
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.37
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.37
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.37
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.37
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.37
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.36
3u23_A	65	CD2-associated protein; structural genomics, struc	99.36
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.36
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.36
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.36
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.36
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.36
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.36
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.36
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.36
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.36
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.36
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.36
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.36
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.36
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.36
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.36
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.36
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.36
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.36
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.36
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.36
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.36
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.36
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.36
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.36
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.36
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.36
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.36
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.35
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.35
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.35
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.35
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.35
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.35
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.35
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.35
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.35
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.35
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.35
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.35
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.35
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.35
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.35
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.35
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.35
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.35
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.35
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.35
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.35
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.35
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.34
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.34
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.34
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.34
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.34
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.34
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.34
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.34
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.34
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.34
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.34
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.34
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.34
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.34
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.34
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.34
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.34
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.34
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.34
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.34
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.33
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.33
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.33
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.33
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.33
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.33
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.33
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.33
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.33
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.33
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.33
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.33
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.33
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.33
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.33
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.33
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.33
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.32
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.32
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.32
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.32
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.32
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.32
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.32
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.32
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.32
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.32
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.32
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.32
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.32
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.31
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.31
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.31
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.31
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.31
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.31
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.31
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.31
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.31
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.31
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.31
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.31
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.31
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.31
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.3
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.3
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.3
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.3
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.3
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.3
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.3
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.3
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.3
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.3
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.3
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.3
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.3
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.3
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.3
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.3
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.29
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.29
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.29
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.29
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.29
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.29
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.28
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.28
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.28
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.28
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.28
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.28
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.27
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.27
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.27
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.27
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.27
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.27
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.27
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.27
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.26
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.26
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	99.26
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.26
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.26
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.26
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.26
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.25
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.25
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.24
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.24
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.24
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.24
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.24
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.23
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.23
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.22
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.22
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.22
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.21
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.2
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.2
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.19
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.19
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.18
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.18
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.17
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.17
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.17
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.17
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.16
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.16
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.15
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.15
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.15
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.14
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.13
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.13
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.13
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.13
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.12
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.12
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.12
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.1
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.09
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.09
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.05
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.05
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.04
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.04
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.03
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.03
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.03
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.02
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.02
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.01
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.0
1u3o_A	82	Huntingtin-associated protein-interacting protein;	98.99
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	98.98
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	98.98
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	98.93
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	98.93
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	98.9
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	98.89
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	98.88
1u3o_A	82	Huntingtin-associated protein-interacting protein;	98.86
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	98.86
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	98.83
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	98.83
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	98.82
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	98.81
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	98.8
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.79
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.76
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.75
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	98.73
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	98.68
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.13
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.67
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.67
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	98.66
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	98.62
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.61
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.61
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.54
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	98.5
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.47
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.46
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	98.43
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.4
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.39
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.36
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.31
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.29
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.2
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.15
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.05
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	97.87
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.85
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	97.83
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.78
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.78
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	97.77
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	97.77
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.75
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.69
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.69
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	97.67
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.43
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.43
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	97.25
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	97.22
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	97.11
3npf_A	306	Putative dipeptidyl-peptidase VI; structural genom	95.74
1wfw_A	74	Kalirin-9A; SH3 domain, neuron-specific GDP/GTP ex	94.74
3h41_A	311	NLP/P60 family protein; NLPC/P60 family protein, s	94.62
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	94.05
2kt8_A	76	Probable surface protein; SH3 family, structural g	93.83
2kq8_A	70	Cell WALL hydrolase; GFT protein structure, NESG,	93.54
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	93.16
2kt8_A	76	Probable surface protein; SH3 family, structural g	92.85
1wfw_A	74	Kalirin-9A; SH3 domain, neuron-specific GDP/GTP ex	91.1
2kq8_A	70	Cell WALL hydrolase; GFT protein structure, NESG,	90.93
3npf_A	306	Putative dipeptidyl-peptidase VI; structural genom	80.62

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.91  E-value=4e-24  Score=162.09  Aligned_cols=130  Identities=25%  Similarity=0.519  Sum_probs=111.5

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCCCCCCCCCCccccccCCCCCcc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVP   98 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (191)
                      ...++|+++|.+...++|+|.+|++|.|+...+.+||.|+.+|+.||||.+|++.+....+....       .+......
T Consensus        11 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~~~~-------~p~~~~~~   83 (193)
T 1ng2_A           11 LQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDP-------EPNYAGEP   83 (193)
T ss_dssp             CEEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCSSCSSCSCCC-------CCCTTCEE
T ss_pred             CcEEEEcCCcCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCeeeEechheEEeeccccccchh-------hcccccee
Confidence            44689999999999999999999999999998899999999999999999999988654321111       11122346


Q ss_pred             EEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ++++|+|.+...++|+|.+||+|.|+...++|||.++.  +|+.||||.+||+.+....
T Consensus        84 ~~al~dy~a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~~~  140 (193)
T 1ng2_A           84 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRK--DDVTGYFPSMYLQKSGQDV  140 (193)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEE--TTEEEEEEGGGEEETTSCH
T ss_pred             eeeccccCCCCCCcccccCCCEEEEEEecCCCeEEEEE--CCCEEEEehHHeEECCCCc
Confidence            89999999999999999999999999998899999997  7999999999999987644

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.89  E-value=1.3e-22  Score=163.85  Aligned_cols=138  Identities=23%  Similarity=0.369  Sum_probs=110.1

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEE-eCCeeeEecCCchhcccCCCCCC--C-------------
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR-IGTRRGIFPVTYVEQQSRATPSG--A-------------   82 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~~~~~--~-------------   82 (191)
                      ...++|+++|.++..++|+|.+|++|.|+...+++||.++ .+|+.|+||.+||+.+....+..  .             
T Consensus       134 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~~~~~~~g~~~~~~~~~~  213 (304)
T 2eyz_A          134 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPL  213 (304)
T ss_dssp             CCEEEECSCCCCSCSSSCCCCTTCEEEEEECCSSSEEEEECTTSCEEEEESTTEEECCCSTTSCCCCCCCSSCCSCCCSC
T ss_pred             ceeEEEEeeecCCCCCcCcccCCCEEEEEEecCCCcEEEEeCCCceeccchhccccccCCCcccccccCCCcCCCCCCCC
Confidence            4468999999999999999999999999999889999999 48999999999999876532111  0             


Q ss_pred             --CCCcc-cc-------ccCCCCCccEEEeeecc--CCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCe
Q psy15854         83 --PVDQT-LH-------IDTHSDPVPYHALYNYK--PQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV  150 (191)
Q Consensus        83 --~~~~~-~~-------~~~~~~~~~~~~~~d~~--~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v  150 (191)
                        +.... ..       .........++|+|||.  +...++|+|.+||+|.|+++.++|||.|+.  +|+.||||.+||
T Consensus       214 ~~~~p~~~~~p~~~~~~p~~~~~~~~~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~gWw~g~~--~g~~G~fP~~yv  291 (304)
T 2eyz_A          214 GGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGEC--NGKRGHFPFTHV  291 (304)
T ss_dssp             SCCCSBTTBCSSSSCSSSCCSSCCCCSCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTTSCEEEEE--TTEEEECCCTTS
T ss_pred             CCCCcccccccccccccCCCCCCCEEEEEeeeecCCCCCCCeecccCCCEEEEEEecCCCeEEEEE--CCceEEechHHE
Confidence              00000 00       00011234689999999  668899999999999999999999999998  699999999999


Q ss_pred             eeccccch
Q psy15854        151 ERASLALR  158 (191)
Q Consensus       151 ~~i~~~~~  158 (191)
                      +.+....+
T Consensus       292 ~~~~~~~~  299 (304)
T 2eyz_A          292 RLLDQQNP  299 (304)
T ss_dssp             CCCSSCCT
T ss_pred             EECCCCCc
Confidence            99876553

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.86  E-value=5e-21  Score=147.36  Aligned_cols=133  Identities=29%  Similarity=0.643  Sum_probs=101.7

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEec-CCCEEEEEeCCeeeEecCCchhcccCCC------------------C-C
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEGRIGTRRGIFPVTYVEQQSRAT------------------P-S   80 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~~~------------------~-~   80 (191)
                      .++|+++|.++..++|+|.+|+++.+++.. +.+||.++.+|+.|+||.+|++....+.                  + +
T Consensus         2 ~~~al~~~~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~~~w~~g~isr~~ae~lL~~~~~~G   81 (217)
T 1gri_A            2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDG   81 (217)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEECCCCSSBCTTCCHHHHHHHHHTCSSTT
T ss_pred             EEEEeeccCCcCCCcCCCCCCCEEEEEeccCCCCeEeeccCCccceECCcccccccchhhcccCCHHHHHHHHhccCCCc
Confidence            489999999999999999999999999876 5789999999999999999997654320                  0 0


Q ss_pred             C------CCCCcc---------------------------------------------c---------cc-cCCCCCccE
Q psy15854         81 G------APVDQT---------------------------------------------L---------HI-DTHSDPVPY   99 (191)
Q Consensus        81 ~------~~~~~~---------------------------------------------~---------~~-~~~~~~~~~   99 (191)
                      +      ......                                             .         .. ........+
T Consensus        82 ~fLvR~S~~~~g~~~LSv~~~~~v~h~~I~~~~~g~~~~~~~~f~sl~eLv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  161 (217)
T 1gri_A           82 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYV  161 (217)
T ss_dssp             CEEEEECSSSTTCEEEEEEETTEEEEEEEEECSSSCEESSSCEESSHHHHHHHHHHSCSSSSTTCCCCBCCCCCCCCCEE
T ss_pred             eEEEEccCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeeeEcCCHHHHHHhhhccccccccceeecccccCCCCceEE
Confidence            0      000000                                             0         00 000123468


Q ss_pred             EEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854        100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus       100 ~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      +|+|||.++..++|+|.+||+|.|+...++|||.|+.  +|+.|+||.+||+.+..
T Consensus       162 ~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~  215 (217)
T 1gri_A          162 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYVTPVNR  215 (217)
T ss_dssp             EESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEC--SSCEEEEEGGGEEEECC
T ss_pred             EecCCccCCCCCcCCCCCCCEEEEEEeCCCCeEEEEE--CCeEEEEeHHHeEECCC
Confidence            9999999999999999999999999999899999998  79999999999998853

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.84  E-value=1.2e-21  Score=158.38  Aligned_cols=136  Identities=21%  Similarity=0.450  Sum_probs=52.2

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhccc---CCCCC------CCCC---
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQS---RATPS------GAPV---   84 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~---~~~~~------~~~~---   84 (191)
                      ....++|+|+|.++..++|+|.+|++|.|++..+.+||+++. +|+.|+||.+||+.+.   .....      +...   
T Consensus       146 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~~~~~~~~~ss~~ss~s  225 (308)
T 3qwy_A          146 IIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEFHNDRTSKGASQSSIGSSGG  225 (308)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTSCEEEEEGGGEEEC----------------------
T ss_pred             cceeEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeCCCCeeEecccccccccccccCccccccccCCCCCccc
Confidence            344799999999999999999999999999998899999996 8999999999999432   11000      0000   


Q ss_pred             -----Cc----cccccCCC-CCccEEEeeeccC--CCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeee
Q psy15854         85 -----DQ----TLHIDTHS-DPVPYHALYNYKP--QNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER  152 (191)
Q Consensus        85 -----~~----~~~~~~~~-~~~~~~~~~d~~~--~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~  152 (191)
                           ..    ........ ....++++|+|.+  ...+||+|.+||+|.|++...+|||.|+.  +|+.|+||.+||+.
T Consensus       226 ~p~p~s~ps~~sp~p~~~~~~~~~a~alyd~~~~~~~~~ELs~~~Gd~i~v~~~~~~~ww~g~~--~g~~G~fP~~yv~~  303 (308)
T 3qwy_A          226 GAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAEL--DGQIGSVPHTYLRF  303 (308)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccCcccccccccccccccccccccccCCcccceeCCCCEEEEEEEcCCCcEEEEE--CCeeEEechHHeEE
Confidence                 00    00000000 1345799999954  44589999999999999998889999988  79999999999999


Q ss_pred             ccc
Q psy15854        153 ASL  155 (191)
Q Consensus       153 i~~  155 (191)
                      +..
T Consensus       304 ~~~  306 (308)
T 3qwy_A          304 TAV  306 (308)
T ss_dssp             ---
T ss_pred             ecC
Confidence            864

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=99.73  E-value=2.4e-22  Score=162.12  Aligned_cols=137  Identities=28%  Similarity=0.450  Sum_probs=108.0

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcccCCCCCCC-----------C---
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQSRATPSGA-----------P---   83 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~~~~~~-----------~---   83 (191)
                      ...++|+|+|.++..++|+|.+|++|.|++..+++||.++. +|++||||.+||+.+....+...           +   
T Consensus       125 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~~~~~~~~~s~~~~~~~~p~~s  204 (303)
T 2lqn_A          125 LEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEPA  204 (303)
Confidence            34689999999999999999999999999998899999995 89999999999998865321100           0   


Q ss_pred             ----CCc---cc----c---------ccCCCCCccEEEeeeccCCC--CCCccCCCCCEEEEeEECCCCEEEEEeCCCCc
Q psy15854         84 ----VDQ---TL----H---------IDTHSDPVPYHALYNYKPQN--DDELELREGETVFVMEKCDDGWYVGSSQRSGC  141 (191)
Q Consensus        84 ----~~~---~~----~---------~~~~~~~~~~~~~~d~~~~~--~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~  141 (191)
                          ...   ..    .         .........++++|||.++.  .++|+|++||+|.|+++.++|||.|+.  +|+
T Consensus       205 ~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~--~g~  282 (303)
T 2lqn_A          205 HAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV--NGR  282 (303)
Confidence                000   00    0         00011234689999998554  679999999999999999999999998  789


Q ss_pred             EEEEcCCCeeeccccc
Q psy15854        142 FGTFPGNYVERASLAL  157 (191)
Q Consensus       142 ~G~vP~~~v~~i~~~~  157 (191)
                      .||||.+||+.+....
T Consensus       283 ~G~fP~~yv~~~~~~~  298 (303)
T 2lqn_A          283 KGLFPFTHVKIFDPQN  298 (303)
Confidence            9999999999987554

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.67  E-value=2.6e-18  Score=140.66  Aligned_cols=137  Identities=23%  Similarity=0.400  Sum_probs=99.4

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCCCCCCCCCCc------------
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGAPVDQ------------   86 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~------------   86 (191)
                      ...++|+++|.++..++|+|.+|++|.++...+++||.|+.+|+.|+||++||+.+........+...            
T Consensus       174 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (341)
T 2dyb_A          174 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEEDDPTNWLRCYYYEDTIST  253 (341)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEECCCCTTCCCEEEEEEEECSSCEE
T ss_pred             CcEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEcCCCCccccccccccccccCCCCcc
Confidence            44699999999999999999999999999998899999999999999999999988553222111000            


Q ss_pred             ccccc---CCCCCccEEEeeeccC----CCCCCccC--CCCCEEEEeEECCCCEEEEEeC-CCCcEEEEcCC-Ceeeccc
Q psy15854         87 TLHID---THSDPVPYHALYNYKP----QNDDELEL--REGETVFVMEKCDDGWYVGSSQ-RSGCFGTFPGN-YVERASL  155 (191)
Q Consensus        87 ~~~~~---~~~~~~~~~~~~d~~~----~~~~eLs~--~~ge~v~v~~~~~~gw~~~~~~-~~g~~G~vP~~-~v~~i~~  155 (191)
                      .....   .......+.++|+|.+    ....+|.+  ..||+|.|++..+.|||.|+.. +.|+.|+||.+ ||+.++.
T Consensus       254 ~~~~~~~~~~~~~~~~~a~yd~~~~~~~~~e~eL~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~~~v~~~~~  333 (341)
T 2dyb_A          254 IKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQKDN  333 (341)
T ss_dssp             EEEEEECSCTTCCCCHHHHHHHHHHHHTCSCEEEEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSCEEEEECC-
T ss_pred             ccccccccccCCCcchhhhhhhhhhhcCCCcccccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceecceeEEEecCC
Confidence            00000   0001112356777776    33344555  8999999999999999999873 35667799998 7776543

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.63  E-value=3.5e-16  Score=105.80  Aligned_cols=88  Identities=30%  Similarity=0.576  Sum_probs=70.9

Q ss_pred             CCeeeEecCCchhcccCCCCCCCCCCccccccCCCCCccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCC
Q psy15854         60 GTRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRS  139 (191)
Q Consensus        60 ~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~  139 (191)
                      +|+.||||.+|++.+........+.        ......++++|+|.++..++|+|++||+|.|++..+.+||.++.  +
T Consensus         6 ~g~~G~fP~~~v~~~~~~~~~~~p~--------~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~   75 (98)
T 1udl_A            6 SGQKGWFPASHVKLLGPSSERATPA--------FHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEI--N   75 (98)
T ss_dssp             SSCCSSCCCCCCCCCSCCCCCCCSC--------CCCSEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBS--S
T ss_pred             CCCEeEEEhhhEEEcCCcccccCCC--------CCCceEEEECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEE--C
Confidence            5789999999999886542211111        11234689999999999999999999999999998889999996  7


Q ss_pred             CcEEEEcCCCeeeccccc
Q psy15854        140 GCFGTFPGNYVERASLAL  157 (191)
Q Consensus       140 g~~G~vP~~~v~~i~~~~  157 (191)
                      |+.|+||.+||+.+....
T Consensus        76 g~~G~~P~~yv~~~~~~~   93 (98)
T 1udl_A           76 GVTGLFPSNYVKMTTDSS   93 (98)
T ss_dssp             SCBCCEETTSEEECCCCS
T ss_pred             CcEEEEehHHeEEcCCCC
Confidence            999999999999886544

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.60  E-value=4.9e-15  Score=92.43  Aligned_cols=58  Identities=67%  Similarity=1.221  Sum_probs=53.8

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ..++|+|||.++..++|+|++||+|.|++..++|||.|++.++|+.|+||++||+++-
T Consensus         7 ~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l~   64 (65)
T 2lj0_A            7 FSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPLY   64 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEECC
T ss_pred             EEEEEceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEEe
Confidence            3589999999999999999999999999999999999998768999999999999873

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.57  E-value=2.8e-15  Score=91.94  Aligned_cols=56  Identities=27%  Similarity=0.614  Sum_probs=50.8

Q ss_pred             ccEEEeeeccCCCCCC-ccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         97 VPYHALYNYKPQNDDE-LELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~e-Ls~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .+++|+|||.++..++ |+|++||+|.|+++.+++||.++.. +|+.|+||++||+.|
T Consensus         4 ~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~-~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            4 ARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKE-DGLRGWFPASYVQLL   60 (60)
T ss_dssp             CEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECT-TSCEEEECGGGEEEC
T ss_pred             CEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeC-CCCEEEEcHHHEEEC
Confidence            3699999999988776 9999999999999999999999975 789999999999875

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.54  E-value=6.2e-15  Score=90.40  Aligned_cols=56  Identities=34%  Similarity=0.680  Sum_probs=51.0

Q ss_pred             cceEEEeecCCCCCCCC-ccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcc
Q psy15854         19 EGQARAKFNFVAQTHLE-LSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~e-ls~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~   74 (191)
                      +.+++|+|+|.++..++ |+|.+|+++.|++..+++||.+++ +|++|+||++||+.+
T Consensus         3 g~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            3 GARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             SCEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECTTSCEEEECGGGEEEC
T ss_pred             CCEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeCCCCEEEEcHHHEEEC
Confidence            45799999999998877 999999999999998899999998 689999999999864

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.50  E-value=7.7e-14  Score=86.96  Aligned_cols=56  Identities=29%  Similarity=0.577  Sum_probs=51.9

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhccc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   75 (191)
                      ..++|+++|.++..++|+|.+|+++.|++..+++||.|+.  +|+.|+||++||+++.
T Consensus         7 ~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l~   64 (65)
T 2lj0_A            7 FSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPLY   64 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEECC
T ss_pred             EEEEEceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEEe
Confidence            3689999999999999999999999999998999999987  5899999999998863

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.48  E-value=1.1e-13  Score=84.26  Aligned_cols=56  Identities=34%  Similarity=0.677  Sum_probs=51.9

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .++|+++|.++..++|+|++||+|.+++..+++||.++..++|+.|+||++||+.+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEEC
Confidence            38999999999999999999999999999889999999965699999999999876

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.48  E-value=7.5e-14  Score=89.14  Aligned_cols=70  Identities=26%  Similarity=0.530  Sum_probs=60.8

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCCCCCCCCCCccccccCCCCCccEEE
Q psy15854         22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHA  101 (191)
Q Consensus        22 ~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (191)
                      ++|+++|.+ ..++|+|.+|+++.|++..+++||.++.+|+.|+||.+||+.+....+                ...+++
T Consensus         3 a~alydy~~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~----------------~~~~~a   65 (73)
T 2kxd_A            3 APPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTG----------------KELVLA   65 (73)
T ss_dssp             CCCCCSSCC-CSCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCSSCC----------------SCEEEE
T ss_pred             EEEeeeeCC-CCCEeeEcCCCEEEEEEecCCCEEEEEECCCEEEEehHHeEEcCCCCC----------------CceEEE
Confidence            688999998 899999999999999999889999999999999999999998853211                125999


Q ss_pred             eeeccCC
Q psy15854        102 LYNYKPQ  108 (191)
Q Consensus       102 ~~d~~~~  108 (191)
                      +|||++.
T Consensus        66 lydy~a~   72 (73)
T 2kxd_A           66 LYDYQEK   72 (73)
T ss_dssp             SSCBCCC
T ss_pred             eccccCC
Confidence            9999875

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.45  E-value=2.6e-13  Score=82.98  Aligned_cols=56  Identities=38%  Similarity=0.682  Sum_probs=52.1

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      ...++|+++|.++..++|+|.+|+++.+++..+++||.++.+|+.|+||.+|++.+
T Consensus         4 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            4 GSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI   59 (59)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CcEEEECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            34799999999999999999999999999998899999999999999999999764

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.45  E-value=2.8e-13  Score=85.01  Aligned_cols=58  Identities=26%  Similarity=0.326  Sum_probs=52.8

Q ss_pred             CccEEEeeeccCC--CCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         96 PVPYHALYNYKPQ--NDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        96 ~~~~~~~~d~~~~--~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      +..++|+|+|.++  ..++|+|++||+|.|+.+.++|||.|+.  +|+.|+||.+||+.+..
T Consensus         6 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~--~g~~G~fP~~yv~~~~~   65 (67)
T 2eyx_A            6 PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGEC--NGKRGHFPFTHVRLLDQ   65 (67)
T ss_dssp             SCBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEE--TTEEEEEEGGGBCCBCS
T ss_pred             CEEEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEE--CCCEEEEehHhEEEcCC
Confidence            3469999999998  8889999999999999999999999988  79999999999998754

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=4.4e-13  Score=85.27  Aligned_cols=60  Identities=37%  Similarity=0.645  Sum_probs=55.0

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCCCC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATP   79 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~   79 (191)
                      ..++|+++|.++..++|+|.+|++|.|++..+.+||.++.+|+.|+||.+||+.+....|
T Consensus        10 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~p   69 (72)
T 2dl8_A           10 IEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTSGP   69 (72)
T ss_dssp             EEEEESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEETTEEEEECSSSEEECCSSSC
T ss_pred             EEEEECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEECCEEEEEchHHeEEcCCCCC
Confidence            468999999999999999999999999998888999999999999999999998865543

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.45  E-value=2.5e-13  Score=82.77  Aligned_cols=55  Identities=35%  Similarity=0.664  Sum_probs=51.6

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      .++++++|.++..++|+|++||+|.+++..+++||.++.  +|+.|+||.+||+.+.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQI--NGRRGLFPDNFVREIK   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEEE--TTEEEEEEGGGEEECC
T ss_pred             EEEECcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEEE--CCeEEEEehHHeEEcC
Confidence            489999999999999999999999999998899999998  7999999999999874

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=4.2e-13  Score=84.44  Aligned_cols=59  Identities=29%  Similarity=0.663  Sum_probs=54.7

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|+++.|++..+++||.++..|+.|+||.+||+.+..+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl4_A            7 GNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSGP   65 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEECSSCEEEEETTTEEECCCC
T ss_pred             CCEEEEeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHeEECCCC
Confidence            34789999999999999999999999999988899999999999999999999998654

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.44  E-value=2.8e-13  Score=84.48  Aligned_cols=57  Identities=47%  Similarity=0.772  Sum_probs=53.6

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      .++|+++|.++..++|+|.+|+++.|++..+++||.|+.+|+.|+||.+|++.+..+
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   59 (65)
T 2nwm_A            3 AARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLE   59 (65)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEEETTEEEEECGGGEEECCCC
T ss_pred             EEEEeeeECCCCcCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehhhEEEcCCC
Confidence            589999999999999999999999999998899999999999999999999988654

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.44  E-value=4e-13  Score=82.92  Aligned_cols=57  Identities=30%  Similarity=0.648  Sum_probs=52.5

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      .++|+|+|.++..++|+|++||+|.|+...+++||.+++..+|+.|+||.+||+.+.
T Consensus         5 ~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~~   61 (62)
T 2fpe_A            5 THRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT   61 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEECc
Confidence            489999999999999999999999999999999999997448999999999999874

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.44  E-value=3e-13  Score=84.85  Aligned_cols=59  Identities=25%  Similarity=0.240  Sum_probs=53.6

Q ss_pred             ccEEEeeeccCC--CCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQ--NDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~--~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++|+|+|.++  ..++|+|++||+|.|++..+++||.|+.  +|+.|+||.+||+.+....
T Consensus         2 ~~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~fP~~yv~~~~~~~   62 (67)
T 2bzy_A            2 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV--NGRKGLFPFTHVKIFDPQN   62 (67)
T ss_dssp             EEEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEE--TTEEEEEEGGGEEECCSCC
T ss_pred             cEEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEe--CCcEEEEehHHeEECCCcC
Confidence            358999999998  8899999999999999999999999987  7999999999999986544

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=4.7e-13  Score=84.18  Aligned_cols=59  Identities=27%  Similarity=0.561  Sum_probs=54.5

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|++|.|++..+.+||.+..+|+.|+||.+||+.+..+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dmo_A            7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVSGP   65 (68)
T ss_dssp             SEEEEECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEEETTEEEEECSTTEEECCCS
T ss_pred             CCEEEECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEEeCCCEEEeehHHeEECCCC
Confidence            44799999999999999999999999999998899999999999999999999988643

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.44  E-value=3.7e-13  Score=85.89  Aligned_cols=61  Identities=34%  Similarity=0.636  Sum_probs=54.9

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++|+|+|.++..++|+|++||+|.|++..++|||.++..++|+.|+||.+||+.+..+.
T Consensus         6 ~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~~~~~   66 (73)
T 2lcs_A            6 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPEL   66 (73)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEECCSSC
T ss_pred             CEEEECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEECCCCC
Confidence            3589999999999999999999999999999999999998656899999999999886544

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.43  E-value=4e-13  Score=82.98  Aligned_cols=56  Identities=36%  Similarity=0.695  Sum_probs=51.5

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEE-CCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~-~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      +++|+++|.++..++|+|++||+|.+++. .+++||.++.  +|+.|+||.+||+.+..
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~   59 (62)
T 2j6f_A            3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGEL--NGRRGMFPDNFVKEIKR   59 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEE--TTEEEEEEGGGEEECC-
T ss_pred             EEEECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEEE--CCcEEEechHHEEECCC
Confidence            48999999999999999999999999999 7889999997  79999999999998863

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.43  E-value=8.5e-13  Score=85.70  Aligned_cols=59  Identities=25%  Similarity=0.446  Sum_probs=54.3

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCC-EEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNN-WFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~-w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+|+|.++..++|+|.+|++|.|++..+.+ ||.|+.+|+.|+||.+||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   69 (80)
T 2i0n_A           10 AKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSD   69 (80)
T ss_dssp             CCEEEESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEETTEEEEEEGGGEEEESSC
T ss_pred             CeEEEECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCCC
Confidence            34799999999999999999999999999998777 999999999999999999998654

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.43  E-value=2.7e-13  Score=83.69  Aligned_cols=57  Identities=28%  Similarity=0.649  Sum_probs=53.1

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhccc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   75 (191)
                      ...++|+++|.+...++|+|.+|+++.+++..+++||.++.+|+.|+||++|++.+.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   61 (62)
T 1k4u_S            5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCSC
T ss_pred             CeEEEECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEEECCcEEEEeHHHEEECC
Confidence            347899999999999999999999999999988999999999999999999998764

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.43  E-value=2.9e-13  Score=82.43  Aligned_cols=55  Identities=40%  Similarity=0.784  Sum_probs=51.9

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhccc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   75 (191)
                      .++|+++|.++..++|+|.+|+++.+++..+++||.++.+|+.|+||.+|++.+.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIK   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEEECCeEEEEehHHeEEcC
Confidence            4899999999999999999999999999988999999999999999999998764

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.43  E-value=4.2e-13  Score=82.31  Aligned_cols=55  Identities=24%  Similarity=0.627  Sum_probs=51.4

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      ..++|+++|.++..++|+|++||++.+++..+++||.++.  +|+.|+||.+||+.+
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            5 MRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTV--RGATGIFPLSFVKIL   59 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEEE--CCCEEEechHHEEEC
Confidence            3589999999999999999999999999998999999998  799999999999876

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.43  E-value=4.5e-13  Score=83.42  Aligned_cols=56  Identities=30%  Similarity=0.557  Sum_probs=52.3

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      ...++|+++|.++..++|+|.+|+++.+++..+.+||.++.+|+.|+||.+|++.+
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   64 (65)
T 3ulr_B            9 GITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR   64 (65)
T ss_dssp             CSCEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ceEEEEEeeECCCCcCEeeEecCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEC
Confidence            34699999999999999999999999999998899999999999999999999875

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.43  E-value=3.7e-13  Score=81.93  Aligned_cols=56  Identities=32%  Similarity=0.634  Sum_probs=52.3

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhccc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   75 (191)
                      ..++|+++|.++..++|+|.+|+++.+++..+++||.++.+|+.|+||++|++.+.
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEECccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEECCeEEEeeHHHeEEcc
Confidence            36899999999999999999999999999988999999999999999999998764

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.43  E-value=6.7e-13  Score=82.73  Aligned_cols=57  Identities=23%  Similarity=0.436  Sum_probs=52.5

Q ss_pred             cEEEeeeccC-CCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKP-QNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~-~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      .++|+|+|.+ +..++|+|++||+|.|++..+++||.+++..+|+.|+||.+||+.+.
T Consensus         7 ~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A            7 RVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             EEEESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEEccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEECc
Confidence            5899999999 99999999999999999998899999996558999999999999874

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.43  E-value=4.7e-13  Score=81.80  Aligned_cols=54  Identities=33%  Similarity=0.716  Sum_probs=50.7

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .++++++|.++..++|+|++||+|.+++..+++||.++.  +|+.|+||.+||+.+
T Consensus         6 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            6 VVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTH--NGRTGWFPSNYVREI   59 (59)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEE--CCcEEEEeHHHEEEC
Confidence            589999999999999999999999999998899999998  799999999999864

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.43  E-value=3.8e-13  Score=82.13  Aligned_cols=56  Identities=36%  Similarity=0.690  Sum_probs=51.8

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .++++++|.++..++|+|++||+|.|++..+++||.++...+|+.|+||.+||+.+
T Consensus         3 ~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            3 RAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   58 (59)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEEC
T ss_pred             EEEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            58999999999999999999999999999889999999864589999999999876

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.43  E-value=5.2e-13  Score=81.89  Aligned_cols=55  Identities=29%  Similarity=0.637  Sum_probs=51.7

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      ..++|+++|.++..++|+|.+|+++.+++..+++||.++.+|+.|+||.+|++.+
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            6 PQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI   60 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCEEEEEcHHHEEEC
Confidence            4689999999999999999999999999998899999999999999999999764

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.42  E-value=6.4e-13  Score=84.78  Aligned_cols=59  Identities=25%  Similarity=0.443  Sum_probs=53.8

Q ss_pred             cceEEEeecCCCC--CCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQ--THLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~--~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+|+|.+.  ..++|+|++|++|.|+...+.+||.++.+|+.|+||.+||+.+...
T Consensus         9 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   69 (73)
T 2ebp_A            9 CGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSG   69 (73)
T ss_dssp             SEEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEECSSCEEEECSTTEEECCCC
T ss_pred             ceEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEECCCEEEEeHHHEEECCCC
Confidence            3479999999976  8999999999999999998899999999999999999999988653

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.42  E-value=4.2e-13  Score=81.68  Aligned_cols=55  Identities=35%  Similarity=0.678  Sum_probs=51.2

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      .++|+++|.++..++|+|++||++.+++..+++||.++.  +|+.|+||.+||+.+.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            3 WARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL--HNKLGLFPANYVAPMM   57 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEE--CCeEEEeeHHHeEEcc
Confidence            488999999999999999999999999998899999998  7999999999999764

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.42  E-value=4e-13  Score=83.80  Aligned_cols=57  Identities=32%  Similarity=0.703  Sum_probs=52.4

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      .++|+|+|.++..++|+|++||+|.|++..+++||.++.  +|+.|+||.+||+.+...
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~fP~~yv~~~~~~   59 (65)
T 2nwm_A            3 AARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEH--HGRLGIFPANYVEVLPLE   59 (65)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEEE--TTEEEEECGGGEEECCCC
T ss_pred             EEEEeeeECCCCcCccCCcCCCEEEEEEecCCCEEEEEE--CCcEEEEehhhEEEcCCC
Confidence            489999999999999999999999999998899999997  799999999999987643

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.42  E-value=5.1e-13  Score=81.34  Aligned_cols=54  Identities=44%  Similarity=0.832  Sum_probs=50.8

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .++++++|.++..++|+|++||++.+++..+++||.++.  +|+.|+||.+||+.+
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            4 YVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSC--NGRTGIFPANYVKPA   57 (58)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEECceECCCCCCCccCCCCCEEEEEEecCCCEEEEEE--CCcEEEeeHHHEEEc
Confidence            589999999999999999999999999998899999998  799999999999875

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=6.5e-13  Score=83.94  Aligned_cols=61  Identities=62%  Similarity=1.168  Sum_probs=55.2

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ...++++|+|.++..++|+|++||+|.|++..+++||.+++.++++.|+||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ct3_A            7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSGP   67 (70)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEETTCS
T ss_pred             CcEEEECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEECCCC
Confidence            3468999999999999999999999999999889999999865689999999999988643

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.42  E-value=6.2e-13  Score=83.66  Aligned_cols=57  Identities=35%  Similarity=0.680  Sum_probs=52.8

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++++|||.++..++|+|++||+|.|++..+++||.++.  +|+.|+||.+||+.+..
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~   60 (68)
T 2ew3_A            4 PCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMI--HGESGFFPINYVEVIVP   60 (68)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEEE--TTEEEEEEGGGEEESCC
T ss_pred             CEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEE--CCcEEEeeHHHEEEcCc
Confidence            3589999999999999999999999999999999999998  79999999999998754

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.42  E-value=5.5e-13  Score=82.81  Aligned_cols=57  Identities=32%  Similarity=0.676  Sum_probs=52.8

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++++++|.++..++|+|++||+|.|++..+.+||.++.  +|+.|+||.+||+.+.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~   63 (64)
T 2ak5_A            7 LVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTH--NGRTGWFPSNYVREIKP   63 (64)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEE--TTEEEEEEGGGEEECCC
T ss_pred             EEEEEccccCCcCcCcccCCCCCEEEEeEecCCCEEEEEE--CCCEEEEehHHeEEcCC
Confidence            4589999999999999999999999999988899999998  79999999999998864

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.42  E-value=5.3e-13  Score=81.85  Aligned_cols=55  Identities=33%  Similarity=0.687  Sum_probs=51.2

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      ..++++++|.++..++|+|++||+|.+++..+++||.++.  +|+.|+||.+||+.+
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            6 PQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRL--RGKQGLFPNNYVTKI   60 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEE--CCEEEEEcHHHEEEC
Confidence            3589999999999999999999999999999899999999  799999999999864

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=5.7e-13  Score=84.76  Aligned_cols=60  Identities=22%  Similarity=0.540  Sum_probs=54.6

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ...++|+|+|.++..++|+|++||+|.|++..+.+||.++.  +|+.|+||.+||+.+....
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~~   68 (72)
T 2dl8_A            9 PIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRH--NGIDGLIPHQYIVVQDTSG   68 (72)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEE--TTEEEEECSSSEEECCSSS
T ss_pred             CEEEEECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEE--CCEEEEEchHHeEEcCCCC
Confidence            45699999999999999999999999999998889999999  7999999999999987544

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.42  E-value=1.2e-12  Score=82.31  Aligned_cols=59  Identities=34%  Similarity=0.613  Sum_probs=54.5

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|+++.|++..+.+||.++.+|+.|+||.+||+.+..+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2djq_A            7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVISGP   65 (68)
T ss_dssp             CCEEEECSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEEETTEEEEEESSSEETTCSC
T ss_pred             ceEEEECCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeehHHEEEcCCC
Confidence            34799999999999999999999999999998899999999999999999999988643

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=8e-13  Score=83.08  Aligned_cols=59  Identities=22%  Similarity=0.416  Sum_probs=54.4

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|+++.|++..+++||.++..|+.|+||.+||+.+..+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1x2p_A            7 GEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHSGP   65 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECTTCCEEEESSSEECCCCS
T ss_pred             CCEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCeEEEEehHHeEECCCC
Confidence            34799999999999999999999999999998899999999999999999999987644

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.42  E-value=6e-13  Score=84.89  Aligned_cols=56  Identities=38%  Similarity=0.739  Sum_probs=52.5

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ..++|+++|.++..++|+|++||+|.+++..+++||.++.  +|+.|+||.+||+.+.
T Consensus        14 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~   69 (73)
T 3c0c_A           14 PSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGML--HGQSGFFPLSYVQVLV   69 (73)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEE--TTEEEEEEGGGEEEEE
T ss_pred             eEEEECccCCCCCCCCccCcCCCEEEEEEecCCCEEEEEE--CCCEEEeChHHEEECC
Confidence            3589999999999999999999999999998899999998  7999999999999875

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.42  E-value=5.5e-13  Score=81.77  Aligned_cols=55  Identities=33%  Similarity=0.762  Sum_probs=51.9

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      ..++|+++|.++..++|+|.+|+++.+++..+++||.++.+|+.|+||++|++.+
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            5 MRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL   59 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEEECCCEEEechHHEEEC
Confidence            3689999999999999999999999999998899999999999999999999875

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.42  E-value=7e-13  Score=83.38  Aligned_cols=57  Identities=28%  Similarity=0.540  Sum_probs=51.8

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCC---cEEEEcCCCeeec
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSG---CFGTFPGNYVERA  153 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g---~~G~vP~~~v~~i  153 (191)
                      ..++|+|+|.++..++|+|++||+|.|++..+.+||.++...++   +.|+||.+||+.+
T Consensus         8 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            8 FKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             EEEEESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             EEEEECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            46899999999999999999999999999999999999985455   8999999999875

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1.4e-12  Score=84.25  Aligned_cols=59  Identities=29%  Similarity=0.605  Sum_probs=54.7

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|++|.|++..+++||.++.+|+.|+||.+||+.+..+
T Consensus        17 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   75 (78)
T 2ed0_A           17 LEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESISGP   75 (78)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEEETTEEEEEETTSEEECSSS
T ss_pred             CEEEEECccCCccCcCcccccCCCEEEEEEeCCCCEEEEEECCcEEEeChHHEEEcCCC
Confidence            34689999999999999999999999999998899999999999999999999988654

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.42  E-value=3.9e-13  Score=86.45  Aligned_cols=62  Identities=27%  Similarity=0.624  Sum_probs=55.3

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCC---eeeEecCCchhcccCCCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT---RRGIFPVTYVEQQSRATP   79 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g---~~G~~P~~~v~~~~~~~~   79 (191)
                      ....++|+|+|.++..++|+|.+|++|.|++..+.+||.++..+   +.|+||.+||+.+....|
T Consensus         9 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~~~~~p   73 (76)
T 2ed1_A            9 KVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSDSGP   73 (76)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEECCCCCC
T ss_pred             CCeEEEECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEECCCCCC
Confidence            34579999999999999999999999999998889999999865   999999999999876544

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=7.8e-13  Score=83.16  Aligned_cols=57  Identities=35%  Similarity=0.785  Sum_probs=52.8

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++++|+|.++..++|+|++||+|.|++..+++||.++.  +|+.|+||.+||+.+..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~   64 (68)
T 2dl4_A            8 NTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKI--QDRIGFFPANFVQRLSG   64 (68)
T ss_dssp             CEEEESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEEC--SSCEEEEETTTEEECCC
T ss_pred             CEEEEeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEEE--CCcEEEEehHHeEECCC
Confidence            3589999999999999999999999999998899999996  79999999999999864

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.41  E-value=5.2e-13  Score=81.26  Aligned_cols=55  Identities=29%  Similarity=0.590  Sum_probs=51.5

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      ..++|+++|.++..++|+|.+|+++.+++..+++||.++.+|+.|+||.+|++.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            4 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI   58 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            4689999999999999999999999999998899999999999999999999754

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.41  E-value=5.4e-13  Score=83.20  Aligned_cols=58  Identities=21%  Similarity=0.528  Sum_probs=52.0

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      .++++|+|.++..++|+|++||+|.|++..+++||.++.. +|+.|+||++||..+.+.
T Consensus         5 ~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~~~   62 (65)
T 1b07_A            5 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS-EGKRGMIPVPYVEKYHHH   62 (65)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECT-TSCEEEEEGGGEEECC--
T ss_pred             EEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEEC-CCCEEEEChHHEeecCCC
Confidence            5899999999999999999999999999988999999954 699999999999987643

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.41  E-value=6e-13  Score=81.03  Aligned_cols=55  Identities=31%  Similarity=0.644  Sum_probs=51.6

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      ..++|+++|.++..++|+|.+|+++.+++..+++||.++.+|+.|+||.+|++++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKPA   57 (58)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCCCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEc
Confidence            3689999999999999999999999999998899999999999999999999864

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.41  E-value=6.1e-13  Score=80.96  Aligned_cols=55  Identities=40%  Similarity=0.764  Sum_probs=51.1

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      ..++++++|.++..++|+|++||++.+++..+++||.++.  +|+.|+||.+||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            4 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGEL--NGKRGWVPANYVQDI   58 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEE--CCcEEEEeHHHEEEC
Confidence            3589999999999999999999999999998899999998  799999999999864

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.41  E-value=7.7e-13  Score=82.34  Aligned_cols=56  Identities=38%  Similarity=0.767  Sum_probs=51.8

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      ...++++|+|.++..++|+|++||+|.+++..+.+||.++.  +|+.|+||.+||+.+
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   64 (65)
T 3ulr_B            9 GITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVC--KGRYGLFPANYVELR   64 (65)
T ss_dssp             CSCEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             ceEEEEEeeECCCCcCEeeEecCCEEEEEEecCCCEEEEEE--CCcEEEEehHHeEEC
Confidence            34699999999999999999999999999998899999997  799999999999976

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=8.5e-13  Score=83.01  Aligned_cols=57  Identities=32%  Similarity=0.563  Sum_probs=52.8

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++++|+|.++..++|+|++||+|.|++..+.+||.++.  +|+.|+||.+||+.+..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~   64 (68)
T 2dmo_A            8 EAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMF--NGQKGLVPCNYLEPVSG   64 (68)
T ss_dssp             EEEEECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEEE--TTEEEEECSTTEEECCC
T ss_pred             CEEEECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEEe--CCCEEEeehHHeEECCC
Confidence            4689999999999999999999999999999899999987  79999999999999864

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.41  E-value=7.4e-13  Score=83.31  Aligned_cols=57  Identities=33%  Similarity=0.708  Sum_probs=53.4

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ..++|+++|.++..++|+|.+|+++.|++..+++||.++.+|+.|+||.+||+.+..
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   60 (68)
T 2ew3_A            4 PCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVP   60 (68)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEEETTEEEEEEGGGEEESCC
T ss_pred             CEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEcCc
Confidence            368999999999999999999999999999889999999999999999999998754

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.41  E-value=5.2e-13  Score=80.99  Aligned_cols=55  Identities=22%  Similarity=0.575  Sum_probs=50.0

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .++++++|.++..++|+|++||++.+++..+++||.++.. +|+.|+||.+||+.+
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS-EGKRGMIPVPYVEKY   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECT-TSCEEEEEGGGEEC-
T ss_pred             EEEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeC-CCCEEEEeHHHEEEC
Confidence            4889999999999999999999999999988999999965 699999999999864

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.41  E-value=7.2e-13  Score=82.29  Aligned_cols=56  Identities=38%  Similarity=0.659  Sum_probs=52.8

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhccc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   75 (191)
                      ..++|+++|.++..++|+|.+|+++.|++..+.+||.++.+|+.|+||.+|++.+.
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   62 (64)
T 2ak5_A            7 LVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIK   62 (64)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEEccccCCcCcCcccCCCCCEEEEeEecCCCEEEEEECCCEEEEehHHeEEcC
Confidence            46899999999999999999999999999888999999999999999999998875

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.41  E-value=5.7e-13  Score=82.26  Aligned_cols=56  Identities=27%  Similarity=0.656  Sum_probs=51.9

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEe-cCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRR-VDNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      .++|+++|.++..++|+|.+|+++.+++. .+++||.++.+|+.|+||.+|++.+..
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   59 (62)
T 2j6f_A            3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKR   59 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEETTEEEEEEGGGEEECC-
T ss_pred             EEEECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCC
Confidence            58999999999999999999999999998 778999999999999999999998753

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.41  E-value=7.4e-13  Score=83.00  Aligned_cols=57  Identities=26%  Similarity=0.563  Sum_probs=52.5

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      .++++|+|.++..++|+|++||+|.|++..+++||.++....|+.|+||.+||+.+.
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   64 (67)
T 2o9s_A            8 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK   64 (67)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEEE
T ss_pred             EEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEECC
Confidence            589999999999999999999999999998899999999645699999999999875

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.41  E-value=9.2e-13  Score=83.93  Aligned_cols=58  Identities=28%  Similarity=0.629  Sum_probs=53.1

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ..++|+|+|.++..++|+|.+||+|.|++..+.+||.++...+|+.|+||.+||+.+.
T Consensus        16 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   73 (73)
T 3h0h_A           16 TLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD   73 (73)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEEECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEECC
Confidence            4589999999999999999999999999998899999998657899999999999763

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.41  E-value=6.6e-13  Score=80.80  Aligned_cols=54  Identities=43%  Similarity=0.798  Sum_probs=51.4

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      .++|+++|.++..++|+|.+|+++.++...+++||.++.+|+.|+||.+|++.+
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            4 FVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEC
Confidence            689999999999999999999999999998899999999999999999999875

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.41  E-value=6.7e-13  Score=80.77  Aligned_cols=54  Identities=39%  Similarity=0.816  Sum_probs=50.9

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .++++++|.++..++|+|++||++.+++..+++||.++.  +|+.|+||.+||+.+
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            4 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYVTAV   57 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEE--CCcEEEEchHHeEEC
Confidence            589999999999999999999999999998899999999  799999999999876

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.41  E-value=6.5e-13  Score=80.82  Aligned_cols=54  Identities=31%  Similarity=0.661  Sum_probs=50.9

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .++++++|.++..++|+|++||+|.+++..+++||.++.  +|+.|+||.+||+.+
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            4 FVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL--NNRRGIFPSNYVCPY   57 (58)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEECcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEE--CCcEEEechHHeEEC
Confidence            589999999999999999999999999998899999999  699999999999876

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.41  E-value=6.3e-13  Score=83.37  Aligned_cols=57  Identities=30%  Similarity=0.394  Sum_probs=53.2

Q ss_pred             eEEEeecCCCC--CCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         21 QARAKFNFVAQ--THLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        21 ~~~a~~~~~~~--~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      .++|+++|.++  ..++|+|.+|++|.|+...+.+||.|..+|+.|+||++||+.+...
T Consensus         3 ~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   61 (67)
T 2bzy_A            3 FAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ   61 (67)
T ss_dssp             EEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEECCSC
T ss_pred             EEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEeCCcEEEEehHHeEECCCc
Confidence            58999999998  9999999999999999998899999999999999999999988654

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.40  E-value=8.2e-13  Score=81.91  Aligned_cols=56  Identities=39%  Similarity=0.878  Sum_probs=52.4

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .++++++|.++..++|+|.+||+|.+++..+.+||.++..++|+.|+||.+||+.+
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            8 TYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            58999999999999999999999999999889999999966789999999999876

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=1.9e-12  Score=83.99  Aligned_cols=60  Identities=17%  Similarity=0.294  Sum_probs=55.2

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ....++|+++|.++..++|+|.+|++|.|++..+.+||.++..|+.||||.+||+.+...
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   66 (80)
T 2ekh_A            7 GATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENE   66 (80)
T ss_dssp             SCEEEEECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEEETTEEEEEETTTEECCCCC
T ss_pred             CCCEEEECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEEECCCEEEEEhHHeEECCCC
Confidence            344789999999999999999999999999998899999999999999999999988654

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.40  E-value=1.1e-12  Score=87.66  Aligned_cols=58  Identities=41%  Similarity=0.774  Sum_probs=52.9

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEEC--CCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~--~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      .++++|||.++..++|+|++||+|.|++..  +.|||.++.  +|+.||||.+||+.+....
T Consensus         7 ~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~~~   66 (93)
T 1uff_A            7 GYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSF--QGNFGWFPCNYVEKMPSSE   66 (93)
T ss_dssp             CEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEE--TTEEEEEETTTEEECCSSS
T ss_pred             EEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEE--CCCEEEechHHeEEcCCcc
Confidence            589999999999999999999999999876  779999997  7999999999999987654

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.40  E-value=1.1e-12  Score=82.54  Aligned_cols=57  Identities=32%  Similarity=0.617  Sum_probs=52.7

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++++|+|.++..++|+|++||+|.|++..+.+||.++.  +|+.|+||.+||+.+..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~   64 (68)
T 2djq_A            8 PRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEI--NGVSGIFPASSVEVISG   64 (68)
T ss_dssp             CEEEECSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEEE--TTEEEEEESSSEETTCS
T ss_pred             eEEEECCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEEE--CCcEEEeehHHEEEcCC
Confidence            3589999999999999999999999999998899999997  79999999999998764

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.40  E-value=8.7e-13  Score=83.65  Aligned_cols=58  Identities=29%  Similarity=0.625  Sum_probs=53.0

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .++++|+|.++..++|+|++||+|.|+...++|||.++...+|+.|+||.+||+.+..
T Consensus         8 ~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~~~   65 (71)
T 2fpf_A            8 THRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK   65 (71)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEECC-
T ss_pred             EEEECeeECccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEECCC
Confidence            5899999999999999999999999999999999999964489999999999998864

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=5.9e-13  Score=85.58  Aligned_cols=59  Identities=24%  Similarity=0.495  Sum_probs=54.3

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++++|+|.++..++|+|++||+|.|++..+.+||.++.  +|+.|+||.+||+.+...+
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~~   69 (76)
T 2epd_A           11 VEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEH--NGMRGLIPHKYITLPAGTE   69 (76)
T ss_dssp             EEEEESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEEE--TTEEEEEESSSEECCSSCS
T ss_pred             EEEEECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEEE--CCcEEEEehHHEEEcCCCC
Confidence            4689999999999999999999999999998889999998  7999999999999987554

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=2e-12  Score=83.48  Aligned_cols=56  Identities=46%  Similarity=0.910  Sum_probs=52.4

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .++++|+|.++..++|+|++||+|.|++..+++||.++.  +|+.|+||.+||+.+..
T Consensus        19 ~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~   74 (78)
T 2ed0_A           19 KVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVM--NGVTGLFPGNYVESISG   74 (78)
T ss_dssp             EEEECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEEE--TTEEEEEETTSEEECSS
T ss_pred             EEEECccCCccCcCcccccCCCEEEEEEeCCCCEEEEEE--CCcEEEeChHHEEEcCC
Confidence            589999999999999999999999999999899999997  79999999999998863

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.40  E-value=9.3e-13  Score=80.11  Aligned_cols=55  Identities=22%  Similarity=0.536  Sum_probs=50.5

Q ss_pred             cEEEeeec-cCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeee
Q psy15854         98 PYHALYNY-KPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER  152 (191)
Q Consensus        98 ~~~~~~d~-~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~  152 (191)
                      .++++++| .+...++|+|++||+|.|++..++|||.++..++|+.|+||.+||+.
T Consensus         2 ~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             EEEEecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            47899999 89999999999999999999998999999996559999999999975

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.40  E-value=2.7e-13  Score=84.54  Aligned_cols=56  Identities=38%  Similarity=0.828  Sum_probs=51.9

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .++|+|+|.++..++|+|++||+|.|++..+++||.++.  +|+.|+||++||+.+..
T Consensus         3 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~--~g~~G~fP~~yv~~~~~   58 (65)
T 2fei_A            3 QCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTL--NNKLGLFPSNFVKELEL   58 (65)
T ss_dssp             EEECSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEES--SSCEEEEETTTSCBCCC
T ss_pred             EEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEE--CCcEEEecHHHEEEcCC
Confidence            488999999999999999999999999998899999997  79999999999998764

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.40  E-value=9.6e-13  Score=80.60  Aligned_cols=56  Identities=21%  Similarity=0.564  Sum_probs=51.1

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEE-CCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~-~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .++++++|.++..++|+|++||+|.+++. .+++||.++..++|+.|+||.+||+.+
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            4 RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            58999999999999999999999999998 488999999855799999999999864

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=9e-13  Score=82.88  Aligned_cols=59  Identities=31%  Similarity=0.556  Sum_probs=54.3

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|+++.|++..+.+||.++.+|+.|+||.+|++.+..+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1x2k_A            7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQSGP   65 (68)
T ss_dssp             SEEEEESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEESSSCEEEEETTTEEECCCC
T ss_pred             cEEEEECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEEECCcEEEEehHHeEEcCCC
Confidence            44789999999999999999999999999998899999999999999999999988543

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.40  E-value=5.9e-13  Score=82.18  Aligned_cols=56  Identities=32%  Similarity=0.738  Sum_probs=51.8

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ..++|+++|.+...++|+|++||+|.|++..+++||.++.  +|+.|+||.+||+.+.
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~   61 (62)
T 1k4u_S            6 SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGES--KGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             EEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEEC--SSCEEEECGGGCCCSC
T ss_pred             eEEEECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEEE--CCcEEEEeHHHEEECC
Confidence            4589999999999999999999999999998899999996  7999999999998764

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.40  E-value=9.2e-13  Score=83.77  Aligned_cols=57  Identities=30%  Similarity=0.622  Sum_probs=52.1

Q ss_pred             CCcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhc
Q psy15854         17 LSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ   73 (191)
Q Consensus        17 ~~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~   73 (191)
                      .....++|+++|.++..++|+|.+|++|.|+...+++||.++..|+.|+||++||++
T Consensus        15 ~~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           15 HEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTA   71 (72)
T ss_dssp             CCCEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEECSSCEEECTTCCEEE
T ss_pred             CCCeEEEECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCEEEechhhCcc
Confidence            344579999999999999999999999999998889999999999999999999874

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.40  E-value=8.7e-13  Score=81.89  Aligned_cols=56  Identities=25%  Similarity=0.630  Sum_probs=51.5

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEec--CCCEEEEEeCCeeeEecCCchhcc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      ...++|+++|.++..++|+|.+|+++.+++..  +++||.++.+|+.|+||.+|++.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~l   63 (64)
T 2jte_A            6 KEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI   63 (64)
T ss_dssp             SEEEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             CEEEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEECCeEEEEeHHHEEEC
Confidence            34789999999999999999999999999975  679999999999999999999875

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.40  E-value=9.4e-13  Score=80.04  Aligned_cols=55  Identities=35%  Similarity=0.609  Sum_probs=51.6

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhccc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   75 (191)
                      .++|+++|.++..++|+|.+|+.+.+++..+.+||.+..+|+.|+||.+|+++..
T Consensus         3 ~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   57 (58)
T 4e6r_A            3 PAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEEV   57 (58)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEEECCcEEEEehHHEEECC
Confidence            5899999999999999999999999999988999999889999999999998753

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=1.8e-12  Score=84.30  Aligned_cols=60  Identities=23%  Similarity=0.502  Sum_probs=55.2

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ....++|+++|.++..++|+|.+|++|.|++..+.+||.++..|+.|+||.+||+.+...
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   68 (81)
T 2ysq_A            9 SIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQ   68 (81)
T ss_dssp             CCEEEEESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEESSCC
T ss_pred             CceEEEEeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEEECCCEEEechHHEEEcCCc
Confidence            345799999999999999999999999999998899999999999999999999998654

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.40  E-value=8e-13  Score=81.01  Aligned_cols=55  Identities=35%  Similarity=0.782  Sum_probs=50.8

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEec--CCCEEEEEeCCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      ..++|+++|.++..++|+|.+|+++.+++..  +++||.++.+|+.|+||++|++.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            4 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   60 (60)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEECCEEEEEeHHHEEEC
Confidence            4689999999999999999999999999986  689999999999999999999764

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.40  E-value=7.8e-13  Score=83.45  Aligned_cols=56  Identities=38%  Similarity=0.727  Sum_probs=51.7

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEEC--CCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~--~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .++++|||.++..++|+|++||+|.|+...  +++||.++.  +|+.|+||.+||+.+..
T Consensus         4 ~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~--~g~~G~~P~~yV~~~~~   61 (69)
T 2ydl_A            4 YCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL--NGRRGVFPDNFVKLLPP   61 (69)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEE--TTEEEEEEGGGEEECCS
T ss_pred             EEEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEE--CCcEEEecHHHEEECCC
Confidence            589999999999999999999999999985  789999998  79999999999998764

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.40  E-value=8e-13  Score=83.93  Aligned_cols=59  Identities=25%  Similarity=0.515  Sum_probs=53.5

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ....++|+++|.++..++|+|.+|+++.+++..+.+||.++.+|+.|+||.+|++.+..
T Consensus        12 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   70 (72)
T 4glm_A           12 ALTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCPA   70 (72)
T ss_dssp             -CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEEETTEEEEEEGGGEEEEC-
T ss_pred             CCeEEEECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEEECCcEEEEChHHeEECCC
Confidence            34579999999999999999999999999999889999999999999999999998753

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.40  E-value=2.8e-13  Score=84.48  Aligned_cols=58  Identities=24%  Similarity=0.636  Sum_probs=53.5

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ..++|+++|.++..++|+|.+|+++.|++..+++||.|+.+|+.|+||++|++.+...
T Consensus         2 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   59 (65)
T 2fei_A            2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELE   59 (65)
T ss_dssp             CEEECSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEESSSCEEEEETTTSCBCCCC
T ss_pred             eEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCcEEEecHHHEEEcCCC
Confidence            3689999999999999999999999999988899999999999999999999987543

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.40  E-value=1.1e-12  Score=82.74  Aligned_cols=58  Identities=22%  Similarity=0.452  Sum_probs=52.8

Q ss_pred             cEEEeeecc-CCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         98 PYHALYNYK-PQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        98 ~~~~~~d~~-~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .++++|+|. ++..++|+|++||++.|++..++|||.++..++|+.|+||.+||+.+..
T Consensus         4 ~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   62 (69)
T 1ruw_A            4 KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKD   62 (69)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEECCS
T ss_pred             EEEEccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEcCC
Confidence            489999996 9999999999999999999988999999996559999999999998754

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.40  E-value=7.6e-13  Score=83.66  Aligned_cols=61  Identities=26%  Similarity=0.488  Sum_probs=54.3

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ...++++|+|.++..++|+|++||+|.|++..+++||.++....++.|+||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ecz_A            7 GGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISGP   67 (70)
T ss_dssp             CBCEEESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEESSSC
T ss_pred             CCEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEECCCC
Confidence            3469999999999999999999999999998888999999964569999999999988643

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.40  E-value=1e-12  Score=81.61  Aligned_cols=55  Identities=35%  Similarity=0.707  Sum_probs=50.5

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEEC--CCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~--~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      ..++++++|.++..++|+|++||+|.|+++.  +++||.++.  +|+.|+||.+||+.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~l   63 (64)
T 2jte_A            7 EYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGEL--NGKEGVFPDNFAVQI   63 (64)
T ss_dssp             EEEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEE--CCeEEEEeHHHEEEC
Confidence            3589999999999999999999999999875  678999997  799999999999876

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.40  E-value=6.7e-13  Score=80.80  Aligned_cols=54  Identities=30%  Similarity=0.616  Sum_probs=50.7

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeC--CeeeEecCCchhcc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG--TRRGIFPVTYVEQQ   74 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~   74 (191)
                      .++|+++|.++..++|+|.+|+++.+++..+++||.++..  |+.|+||++||+.+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEEC
Confidence            4799999999999999999999999999988999999996  99999999999865

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.40  E-value=8.2e-13  Score=80.37  Aligned_cols=54  Identities=30%  Similarity=0.632  Sum_probs=51.3

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      .++|+++|.++..++|+|.+|+++.+++..+++||.++.+|+.|+||++|++.+
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            4 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV   57 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCcEEEEchHHeEEC
Confidence            689999999999999999999999999998899999999999999999999875

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.40  E-value=8e-13  Score=82.90  Aligned_cols=56  Identities=30%  Similarity=0.371  Sum_probs=52.3

Q ss_pred             eEEEeecCCCC--CCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         21 QARAKFNFVAQ--THLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        21 ~~~a~~~~~~~--~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      .++|+++|.++  ..++|+|.+|++|.|+...+.+||.|..+|+.|+||++||+.+..
T Consensus         8 ~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   65 (67)
T 2eyx_A            8 YARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQ   65 (67)
T ss_dssp             BEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEETTEEEEEEGGGBCCBCS
T ss_pred             EEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEECCCEEEEehHhEEEcCC
Confidence            68999999999  888999999999999999889999999999999999999998753

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=1e-12  Score=82.64  Aligned_cols=57  Identities=25%  Similarity=0.617  Sum_probs=52.5

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++++|+|.++..++|+|++||+|.|++..+++||.++.  +|+.|+||.+||+.+..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~   64 (68)
T 1x2p_A            8 EEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGER--AGCCGYIPANHVGKHSG   64 (68)
T ss_dssp             CEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEC--TTCCEEEESSSEECCCC
T ss_pred             CEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEE--CCeEEEEehHHeEECCC
Confidence            4589999999999999999999999999998899999997  68999999999998753

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.39  E-value=1.3e-12  Score=79.47  Aligned_cols=55  Identities=44%  Similarity=0.828  Sum_probs=50.9

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      .++++|+|.++..++|+|++||+|.+++..+.+||.+..  +|+.|+||.+||+.+.
T Consensus         3 ~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~   57 (58)
T 4e6r_A            3 PAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSY--NGQIGWFPSNYVLEEV   57 (58)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEEE--TTEEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEEE--CCcEEEEehHHEEECC
Confidence            589999999999999999999999999999899999976  7999999999999763

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.39  E-value=1.4e-12  Score=82.62  Aligned_cols=60  Identities=20%  Similarity=0.492  Sum_probs=54.2

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ..++++|+|.++..++|+|++||+|.|+... +++||.++..++|+.|+||.+||+.+...
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (71)
T 2jt4_A            7 KRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDK   67 (71)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEETTTS
T ss_pred             CEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEECCCc
Confidence            4689999999999999999999999999987 88999999855789999999999988643

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.39  E-value=1.4e-12  Score=81.99  Aligned_cols=59  Identities=49%  Similarity=0.797  Sum_probs=54.4

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|+++.|++..+++||.++.+|+.|+||.+|++.+..+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl3_A            7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLSGP   65 (68)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEECSSCEEEEETTTEEECCSC
T ss_pred             CcEEEECccCCCCCcCCccCCCCCEEEEeEecCCCEEEEEECCCEEEEchHHEEECCCC
Confidence            44799999999999999999999999999988899999999999999999999988643

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.39  E-value=9.1e-13  Score=81.21  Aligned_cols=55  Identities=20%  Similarity=0.578  Sum_probs=51.9

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      ..++|+++|.++..++|+|.+|+++.+++..+.+||.++.+|+.|+||.+|++.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            7 ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL   61 (62)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEEECCEEEEEEHHHEEEC
Confidence            4689999999999999999999999999998899999999999999999999875

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=7.3e-13  Score=83.97  Aligned_cols=60  Identities=22%  Similarity=0.362  Sum_probs=55.2

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ....++|+++|.++..++|+|.+|+++.|++..+++||.++..|+.|+||.+|++.+...
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   66 (71)
T 2dnu_A            7 GEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDS   66 (71)
T ss_dssp             CSEEEECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEETTEEEEEEGGGCEECCCC
T ss_pred             CCCEEEECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEECCcEEEEEHHHeEEccCC
Confidence            345799999999999999999999999999988899999999999999999999998654

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.39  E-value=1.4e-12  Score=81.94  Aligned_cols=58  Identities=34%  Similarity=0.689  Sum_probs=53.1

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ...++++++|.++..++|+|++||+|.|++..+++||.++.  +|+.|+||.+||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~   64 (68)
T 2dl3_A            7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEH--HGRVGIFPRTYIELLSG   64 (68)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEC--SSCEEEEETTTEEECCS
T ss_pred             CcEEEECccCCCCCcCCccCCCCCEEEEeEecCCCEEEEEE--CCCEEEEchHHEEECCC
Confidence            34689999999999999999999999999988899999996  79999999999998864

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=4.8e-13  Score=84.87  Aligned_cols=59  Identities=24%  Similarity=0.396  Sum_probs=53.7

Q ss_pred             ccEEEeeeccC-CCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKP-QNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~-~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++|+|+|.+ +..++|+|++||+|.|++..+++||.+++..+|+.|+||.+||+.+..
T Consensus         8 ~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   67 (71)
T 2gqi_A            8 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG   67 (71)
T ss_dssp             CCEEESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEECCC
T ss_pred             CEEEECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEECCC
Confidence            35999999999 999999999999999999988999999965589999999999998853

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=2.9e-12  Score=82.95  Aligned_cols=59  Identities=29%  Similarity=0.534  Sum_probs=54.5

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|++|.|++..+.+||.++..|+.|+||.+||+.+...
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   75 (79)
T 1x69_A           17 GITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSG   75 (79)
T ss_dssp             CCCEEESSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEEETTEEEEEETTSEEECCCC
T ss_pred             CeEEEECccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEEECCcEEEechHHEEECCCC
Confidence            44699999999999999999999999999998899999999999999999999988643

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.39  E-value=9.1e-13  Score=80.74  Aligned_cols=54  Identities=31%  Similarity=0.724  Sum_probs=50.0

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEEC--CCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~--~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .++++++|.++..++|+|++||+|.+++..  +++||.++.  +|+.|+||.+||+.+
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            5 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV--NGREGIFPANYVELV   60 (60)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEE--CCEEEEEeHHHEEEC
Confidence            589999999999999999999999999986  689999998  799999999999864

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.39  E-value=1e-12  Score=82.38  Aligned_cols=56  Identities=27%  Similarity=0.563  Sum_probs=51.9

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      .++|+|+|.++..++|+|++||+|.|++..+++||.++.. +|+.|+||.+||+.+.
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~   59 (67)
T 1gl5_A            4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDK-YGSEGYIPSNYVTGKK   59 (67)
T ss_dssp             CEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECS-SSCEEEEETTSEESST
T ss_pred             EEEECccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEEC-CCCEEEEEhHhEEEcC
Confidence            4899999999999999999999999999988999999965 7899999999999873

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=2.1e-12  Score=85.39  Aligned_cols=60  Identities=27%  Similarity=0.278  Sum_probs=53.5

Q ss_pred             CccEEEeeeccCC--CCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         96 PVPYHALYNYKPQ--NDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        96 ~~~~~~~~d~~~~--~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ...++++|+|.+.  ..++|+|++||+|.|+.+.+.+||.++.  +|+.|+||.+||+.+....
T Consensus        16 ~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~fP~~yv~~~~~~~   77 (88)
T 2dbk_A           16 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV--NGRKGLFPFTHVKIFDPQN   77 (88)
T ss_dssp             CEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEEC--SSCEEEECTTTEEECCSSC
T ss_pred             CEEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEe--CCCEEEEehHHeEECCCCC
Confidence            3468999999954  8899999999999999999999999987  7999999999999987544

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.39  E-value=1.6e-12  Score=82.79  Aligned_cols=59  Identities=36%  Similarity=0.692  Sum_probs=53.9

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEec--CCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ....++|+++|.++..++|+|.+|++|.|+...  +.+||.|+.+|+.|+||.+||+.+..
T Consensus         8 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   68 (73)
T 2k9g_A            8 SKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP   68 (73)
T ss_dssp             SCEEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEETTEEEEEEGGGEEECCS
T ss_pred             CccEEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEECCeEEEEchHHEEECCc
Confidence            345799999999999999999999999999985  78999999999999999999998754

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.39  E-value=1.9e-12  Score=84.16  Aligned_cols=60  Identities=32%  Similarity=0.641  Sum_probs=54.2

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEec--CCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ....++|+|+|.++..++|+|.+|++|.|+...  +.+||.++.+|+.|+||.+||+.+...
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   77 (81)
T 1x43_A           16 NNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNSG   77 (81)
T ss_dssp             CCEEEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEETTEEEEEEGGGEEECCCC
T ss_pred             CCeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEECCCEEEEehHHEEECCCC
Confidence            445799999999999999999999999999984  589999999999999999999988643

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.39  E-value=1.1e-12  Score=80.91  Aligned_cols=55  Identities=20%  Similarity=0.531  Sum_probs=51.3

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      .++++++|.++..++|+|.+|+++.+++..+.+||.++.  +|+.|+||.+||+.++
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~--~g~~G~~P~~yv~~~d   62 (62)
T 3ngp_A            8 LVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEV--NGRQGFVPAAYLKKLD   62 (62)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEECC
T ss_pred             EEEECcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEEE--CCEEEEEEHHHEEECC
Confidence            589999999999999999999999999998899999997  7999999999999763

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.39  E-value=1.5e-12  Score=82.54  Aligned_cols=59  Identities=17%  Similarity=0.521  Sum_probs=54.1

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEec-CCCEEEEEe--CCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEGRI--GTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~-~~~w~~~~~--~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|+++.|+... +++||.++.  +|+.|+||.+|++.+...
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (71)
T 2jt4_A            6 KKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDK   67 (71)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEETTTS
T ss_pred             CCEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEECCCc
Confidence            45799999999999999999999999999986 789999999  899999999999988654

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.39  E-value=1e-12  Score=82.88  Aligned_cols=57  Identities=35%  Similarity=0.697  Sum_probs=52.6

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEec--CCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ..++|+++|.++..++|+|.+|++|.|+...  +++||.++.+|+.|+||.+||+.+..
T Consensus         3 ~~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~~P~~yV~~~~~   61 (69)
T 2ydl_A            3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP   61 (69)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEETTEEEEEEGGGEEECCS
T ss_pred             cEEEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEECCcEEEecHHHEEECCC
Confidence            3689999999999999999999999999985  78999999999999999999998753

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.38  E-value=7.4e-13  Score=81.20  Aligned_cols=54  Identities=35%  Similarity=0.628  Sum_probs=50.6

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchh
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE   72 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~   72 (191)
                      ...++|+++|.++..++|+|.+|+++.+++..+++||.++.+|+.|+||.+||+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~   59 (60)
T 2gnc_A            6 PEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV   59 (60)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEE
T ss_pred             CEEEEECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEeHhhEE
Confidence            346899999999999999999999999999988899999999999999999986

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.38  E-value=1e-12  Score=83.80  Aligned_cols=56  Identities=25%  Similarity=0.399  Sum_probs=51.6

Q ss_pred             cEEEeeeccCC--CCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         98 PYHALYNYKPQ--NDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        98 ~~~~~~d~~~~--~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .++|+|+|.+.  ..++|+|++||+|.|+++.+.+||.++.  +|+.|+||.+||+.+..
T Consensus        11 ~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~--~g~~G~fP~~yv~~~~~   68 (73)
T 2ebp_A           11 RARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLL--NNKVGTFKFIYVDVLSS   68 (73)
T ss_dssp             EEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEEC--SSCEEEECSTTEEECCC
T ss_pred             EEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEE--CCCEEEEeHHHEEECCC
Confidence            58999999976  8899999999999999998899999987  78999999999998864

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.38  E-value=6.2e-13  Score=89.67  Aligned_cols=61  Identities=30%  Similarity=0.640  Sum_probs=55.4

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRAT   78 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   78 (191)
                      ....++|+++|.++..++|+|.+|++|.|++..+.+||.++..|+.|+||.+||+.+....
T Consensus        33 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   93 (98)
T 1udl_A           33 PVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSS   93 (98)
T ss_dssp             CSEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCCS
T ss_pred             CceEEEECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEcCCCC
Confidence            3457899999999999999999999999999888899999999999999999999886543

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.38  E-value=8.7e-13  Score=82.06  Aligned_cols=57  Identities=25%  Similarity=0.667  Sum_probs=52.7

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhccc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   75 (191)
                      ...++|+++|.++..++|+|.+|+++.+++..+.+||.++.+|+.|+||.+|++.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   63 (65)
T 3u23_A            7 KRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE   63 (65)
T ss_dssp             -CEEEECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEECC
T ss_pred             CeEEEEeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCCEEEeehHHEEECc
Confidence            347999999999999999999999999999988999999999999999999998874

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1.2e-12  Score=84.96  Aligned_cols=60  Identities=30%  Similarity=0.607  Sum_probs=54.2

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecC--CCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~--~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ....++|+++|.++..++|+|.+|++|.|++..+  .+||.++.+|+.|+||.+||+.+..+
T Consensus        16 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   77 (80)
T 2d8h_A           16 QPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNSGP   77 (80)
T ss_dssp             SCEEEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEETTEEEEEEGGGCCBCCCC
T ss_pred             CCEEEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEECCEEEEEchhHeEEcCCC
Confidence            3457899999999999999999999999999875  79999999999999999999987654

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.38  E-value=1.4e-12  Score=84.70  Aligned_cols=58  Identities=22%  Similarity=0.382  Sum_probs=52.7

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCC-EEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDG-WYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~g-w~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ..++++|||.++..++|+|++||+|.|++..+.+ ||.|+.  +|+.|+||.+||+.+...
T Consensus        11 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~--~g~~G~fP~~yv~~~~~~   69 (80)
T 2i0n_A           11 KYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQL--NGKEGSFPVDHVEILLSD   69 (80)
T ss_dssp             CEEEESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEE--TTEEEEEEGGGEEEESSC
T ss_pred             eEEEECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEE--CCcEEEechHHEEECCCC
Confidence            4689999999999999999999999999998777 999997  799999999999998643

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1.2e-12  Score=82.25  Aligned_cols=57  Identities=35%  Similarity=0.761  Sum_probs=52.5

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++++++|.++..++|+|++||+|.|++..+++||.++.  +|+.|+||.+||+.+..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~   64 (68)
T 1x2k_A            8 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTS--KGRTGLIPSNYVAEQSG   64 (68)
T ss_dssp             EEEEESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEES--SSCEEEEETTTEEECCC
T ss_pred             EEEEECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEEE--CCcEEEEehHHeEEcCC
Confidence            3589999999999999999999999999998899999998  79999999999998853

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=8.8e-13  Score=83.38  Aligned_cols=59  Identities=31%  Similarity=0.459  Sum_probs=54.6

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|+++.|++..+.+||.++..|+.|+||.+|++.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   66 (70)
T 2ega_A            8 LEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSG   66 (70)
T ss_dssp             CBCEECCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEECSSCEEEEEGGGCEESCCC
T ss_pred             CcEEEECceECCCCCCcccCCCCCEEEEEEccCCCeEEEEECCCEEEEehHHcEECCCC
Confidence            34699999999999999999999999999998899999999999999999999988654

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.38  E-value=1.3e-12  Score=82.41  Aligned_cols=59  Identities=27%  Similarity=0.526  Sum_probs=54.3

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|+++.+++..+.+||.++..|+.|+||.+|++.+..+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   66 (69)
T 2dil_A            8 AQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLSGP   66 (69)
T ss_dssp             CCEEECCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGCCBCCCS
T ss_pred             CcEEEECccCCccCcCccCCCCCCEEEEEECCCCCEEEEEECCCEEEEehHHeEEcCCC
Confidence            34799999999999999999999999999998899999999999999999999987643

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.38  E-value=7.2e-13  Score=83.53  Aligned_cols=57  Identities=35%  Similarity=0.556  Sum_probs=52.3

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEEC---CCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKC---DDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~---~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++|+|+|.++..++|+|++||+|.|++..   +++||.++.  +|+.|+||.+||+.+..
T Consensus         4 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~   63 (69)
T 1wyx_A            4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSL--HGRQGIVPGNRLKILVG   63 (69)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEE--TTEEEEEEGGGEEEEEE
T ss_pred             EEEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEE--CCcEEEechhhEEECCC
Confidence            3589999999999999999999999999987   789999997  79999999999998854

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1.9e-12  Score=83.79  Aligned_cols=58  Identities=26%  Similarity=0.513  Sum_probs=53.4

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++++|+|.++..++|+|++||+|.|++. +.+||.++..++++.|+||.+||+.+..
T Consensus        18 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~~~   75 (79)
T 1x6b_A           18 PQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFISG   75 (79)
T ss_dssp             CEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEEES
T ss_pred             CEEEECeeECCCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEECCC
Confidence            459999999999999999999999999999 8899999996679999999999998864

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1.5e-12  Score=83.61  Aligned_cols=59  Identities=27%  Similarity=0.550  Sum_probs=54.4

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|++|.|++..+.+||.++.+|+.|+||.+||+.+...
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   68 (76)
T 2epd_A           10 VVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGT   68 (76)
T ss_dssp             CEEEEESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEEETTEEEEEESSSEECCSSC
T ss_pred             CEEEEECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCCC
Confidence            34689999999999999999999999999998899999999999999999999988654

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=2.5e-12  Score=81.99  Aligned_cols=59  Identities=29%  Similarity=0.559  Sum_probs=53.6

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEe---cCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRR---VDNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~---~~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ....++|+++|.++..++|+|.+|++|.|++.   .+.+||.++..|+.|+||.+||+.+..
T Consensus         7 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   68 (73)
T 2dl7_A            7 GVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSS   68 (73)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEETTEEEEECSSSEEECCS
T ss_pred             CCEEEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEECCCEEEEChHHEEECCC
Confidence            34478999999999999999999999999998   468999999999999999999998854

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.38  E-value=1.3e-12  Score=84.69  Aligned_cols=58  Identities=24%  Similarity=0.602  Sum_probs=52.7

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .++++|+|.++..++|+|++||+|.|++..+++||.++..++|+.|+||.+||+.+..
T Consensus         7 ~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   64 (79)
T 3cqt_A            7 LFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDR   64 (79)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC--
T ss_pred             EEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEECCc
Confidence            5899999999999999999999999999988999999985579999999999999864

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.38  E-value=1.3e-12  Score=82.94  Aligned_cols=57  Identities=28%  Similarity=0.568  Sum_probs=52.4

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++++|||.++..++|+|++||+|.|++..+.+||.++.  +|+.|+||.+||+.+..
T Consensus        14 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~   70 (72)
T 4glm_A           14 TYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSL--KGRTGIFPYRFVKLCPA   70 (72)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEEE--TTEEEEEEGGGEEEEC-
T ss_pred             eEEEECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEEE--CCcEEEEChHHeEECCC
Confidence            3589999999999999999999999999999999999997  79999999999998864

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=2.4e-12  Score=85.01  Aligned_cols=60  Identities=27%  Similarity=0.557  Sum_probs=54.9

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ....++|+|+|.++..++|+|.+|++|.|+...+.+||.++..|+.|+||.+||+.+...
T Consensus        16 ~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   75 (88)
T 1x2q_A           16 VARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNI   75 (88)
T ss_dssp             CCEEEEESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEEETTEEEEECGGGEESCSSC
T ss_pred             CCeEEEEcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCCc
Confidence            345799999999999999999999999999988899999999999999999999987543

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.37  E-value=2e-12  Score=79.72  Aligned_cols=56  Identities=30%  Similarity=0.557  Sum_probs=50.1

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      ..++++|+|.++..++|+|++||+|.|++.. ++||.+++..+|+.|+||.+||+.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            7 NLVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEEC
Confidence            3589999999999999999999999999985 5899999744899999999999864

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=4e-12  Score=82.24  Aligned_cols=58  Identities=36%  Similarity=0.731  Sum_probs=53.3

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ...++++|+|.++..++|+|++||+|.|++..+.+||.++.  +|+.|+||.+||+.+..
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~   74 (79)
T 1x69_A           17 GITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVC--KGRYGLFPANYVELRQS   74 (79)
T ss_dssp             CCCEEESSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEEE--TTEEEEEETTSEEECCC
T ss_pred             CeEEEECccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEEE--CCcEEEechHHEEECCC
Confidence            34699999999999999999999999999998899999997  79999999999998864

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=8.1e-13  Score=87.72  Aligned_cols=59  Identities=31%  Similarity=0.612  Sum_probs=54.1

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      .++++|+|.++..++|+|++||+|.|++..+++||.+++.++|+.|+||.+||+.+...
T Consensus        19 ~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~~~   77 (90)
T 2yup_A           19 EAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREP   77 (90)
T ss_dssp             EEEECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEEECC
T ss_pred             EEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEcCCC
Confidence            58999999999999999999999999998889999999854699999999999998654

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=2.1e-12  Score=83.80  Aligned_cols=58  Identities=24%  Similarity=0.391  Sum_probs=53.3

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ..++++|+|.++..++|+|++||+|.|+++.+++||.++.  .++.||||.+||+.+...
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~~   66 (80)
T 2ekh_A            9 TSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRF--GELEGWAPSHYLVLDENE   66 (80)
T ss_dssp             EEEEECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEEE--TTEEEEEETTTEECCCCC
T ss_pred             CEEEECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEEE--CCCEEEEEhHHeEECCCC
Confidence            4589999999999999999999999999999899999998  699999999999988643

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.37  E-value=1.7e-12  Score=82.26  Aligned_cols=58  Identities=33%  Similarity=0.555  Sum_probs=52.5

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEE--CCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~--~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      .++++|+|.+...++|+|++||+|.|+..  .+++||.++.. +|+.|+||.+||+.+...
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~~~   67 (71)
T 1u5s_A            8 VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNA-RGQVGLVPKNYVVVLSDG   67 (71)
T ss_dssp             EEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEET-TTEEEEEETTSEEECCCS
T ss_pred             EEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeC-CCCEEEEeHHHEEECCCC
Confidence            58999999999999999999999999998  67899999854 789999999999998643

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=1.8e-12  Score=84.29  Aligned_cols=60  Identities=20%  Similarity=0.385  Sum_probs=54.3

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ...++++|+|.++..++|+|++||+|.|++..+.+||.++.  .|+.||||.+||+.+....
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~~   69 (81)
T 2ysq_A           10 IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQI--DDEEGWFPASFVRLWVNQE   69 (81)
T ss_dssp             CEEEEESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEEC--SSCEEEEEGGGEEESSCCC
T ss_pred             ceEEEEeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEEE--CCCEEEechHHEEEcCCcc
Confidence            34689999999999999999999999999998899999998  6899999999999986543

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.37  E-value=1.1e-12  Score=84.30  Aligned_cols=61  Identities=30%  Similarity=0.521  Sum_probs=53.8

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCC-CCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQR-SGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~-~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++|+|+|.++..++|+|++||+|.|++..+.+||.++... .++.|+||.+||+.+....
T Consensus        11 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~~~~~   72 (76)
T 2ed1_A           11 RRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSDSG   72 (76)
T ss_dssp             EEEEESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEECCCCC
T ss_pred             eEEEECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEECCCCC
Confidence            469999999999999999999999999998889999999841 3589999999999986543

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.37  E-value=1.3e-12  Score=80.63  Aligned_cols=56  Identities=32%  Similarity=0.660  Sum_probs=51.8

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      ...++|+++|.++..++|+|.+|+++.+++..+++||.++..|+.|+||.+|+++.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   60 (62)
T 1uj0_A            5 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTD   60 (62)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEESC
T ss_pred             CeEEEECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCCEEEechhHEEEe
Confidence            34789999999999999999999999999988899999999999999999999753

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.37  E-value=1.6e-12  Score=79.97  Aligned_cols=56  Identities=29%  Similarity=0.624  Sum_probs=51.7

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeee-EecCCchhccc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRG-IFPVTYVEQQS   75 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G-~~P~~~v~~~~   75 (191)
                      ..++|+++|.++..++|+|.+|+++.+++..+++||.++..++.| +||.+|++.+.
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~gG~~P~~yv~~~~   60 (61)
T 1y0m_A            4 SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI   60 (61)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEEGGGEEECC
T ss_pred             CEEEECcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEEECCeEEEEEChHHcEECC
Confidence            368999999999999999999999999999889999999988886 99999998874

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.37  E-value=2.9e-12  Score=82.70  Aligned_cols=59  Identities=27%  Similarity=0.501  Sum_probs=54.6

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|++|.|++..+.+||.++..|+.|+||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (78)
T 2yuo_A            7 GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDER   65 (78)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEECCC
T ss_pred             ceEEEECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEEehHHEEECCCc
Confidence            34799999999999999999999999999988899999999999999999999988653

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.37  E-value=9.2e-13  Score=80.14  Aligned_cols=54  Identities=24%  Similarity=0.572  Sum_probs=49.7

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECC-CCEEEEEeCCCCcEEEEcCCCee
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE  151 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~-~gw~~~~~~~~g~~G~vP~~~v~  151 (191)
                      .++++|+|.++..++|+|++||+|.+++..+ .+||.++..++|+.|+||.+||+
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~   57 (58)
T 1zuu_A            3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   57 (58)
T ss_dssp             CCEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             EEEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEE
Confidence            4899999999999999999999999999886 79999998657899999999986

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.37  E-value=1.1e-12  Score=80.45  Aligned_cols=53  Identities=21%  Similarity=0.527  Sum_probs=49.7

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCee
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE  151 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~  151 (191)
                      ..++++++|.++..++|+|++||+|.|++..+++||.++.  +|+.|+||.+||+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~   59 (60)
T 2gnc_A            7 EFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRH--NGIDGLVPHQYIV   59 (60)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEE--TTEEEEEEGGGEE
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEE--CCeEEEEeHhhEE
Confidence            4689999999999999999999999999998889999999  6999999999986

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.37  E-value=3.4e-12  Score=82.75  Aligned_cols=61  Identities=21%  Similarity=0.385  Sum_probs=53.9

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCC---CcEEEEcCCCeeecccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRS---GCFGTFPGNYVERASLA  156 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~---g~~G~vP~~~v~~i~~~  156 (191)
                      ...++++|+|.++..++|+|++||+|.|++..+.+||.++....   ++.||||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~~~   70 (80)
T 1ue9_A            7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPS   70 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSC
T ss_pred             CeEEEECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEECCCC
Confidence            34689999999999999999999999999998899999998533   48999999999988643

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.37  E-value=1.6e-12  Score=81.73  Aligned_cols=55  Identities=24%  Similarity=0.440  Sum_probs=50.5

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCC-----eeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-----RRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g-----~~G~~P~~~v~~~   74 (191)
                      ..++|+++|.++..++|+|.+|+++.|+...+.+||.++..+     +.|+||.+||+.+
T Consensus         8 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            8 FKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             EEEEESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             EEEEECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            368999999999999999999999999999889999999854     9999999999865

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.37  E-value=1.7e-12  Score=82.77  Aligned_cols=58  Identities=31%  Similarity=0.709  Sum_probs=53.9

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ...++|+++|.++..++|+|.+|+++.+++..+++||.++.+|+.|+||.+|++.+..
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   70 (73)
T 3c0c_A           13 QPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLVP   70 (73)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEEC
T ss_pred             CeEEEECccCCCCCCCCccCcCCCEEEEEEecCCCEEEEEECCCEEEeChHHEEECCC
Confidence            4479999999999999999999999999999889999999999999999999998753

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.37  E-value=8.6e-13  Score=80.89  Aligned_cols=56  Identities=18%  Similarity=0.380  Sum_probs=51.4

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .++++|+|.++..++|+|.+||+|.|++. +++||.++.. +|+.|+||.+||+.+..
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~-~g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A            3 YAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNA-SGDSGFVPNNILDIMRT   58 (60)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEECT-TSCEEEEEGGGEEEECC
T ss_pred             EEEECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEEC-CCCEEEEEHHHeEEccC
Confidence            48999999999999999999999999998 8899999975 68999999999998864

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.37  E-value=1.8e-12  Score=81.94  Aligned_cols=59  Identities=36%  Similarity=0.680  Sum_probs=53.8

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEec--CCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|++|.|++..  +.+||.++.+|+.|+||.+||+.+..+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2da9_A            7 GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLSGP   67 (70)
T ss_dssp             SEEEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEECSSCEEEEEGGGEEECCCC
T ss_pred             CcEEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEECCcEEEechHHeEECCCC
Confidence            34799999999999999999999999999985  789999999999999999999988643

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=4.5e-12  Score=82.44  Aligned_cols=58  Identities=22%  Similarity=0.435  Sum_probs=52.0

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCC-CEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDD-GWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~-gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ..++++|||.++..++|+|++||+|.|++..++ +||.+++..+|+.|+||.+||+...
T Consensus        18 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   76 (81)
T 1x6g_A           18 TQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERS   76 (81)
T ss_dssp             CEEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CEEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEcc
Confidence            469999999999999999999999999998765 9999997557999999999999764

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.37  E-value=1.5e-12  Score=79.23  Aligned_cols=53  Identities=36%  Similarity=0.844  Sum_probs=49.7

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeee
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER  152 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~  152 (191)
                      .++++++|.++..++|+|++||+|.|++..+++||.++.  +|+.|+||.+||++
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            5 VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTS--KGRTGLIPSNYVAE   57 (58)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEE
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEEE--CCCEEEEehHHEEe
Confidence            589999999999999999999999999998889999998  79999999999975

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.37  E-value=2e-12  Score=81.88  Aligned_cols=60  Identities=25%  Similarity=0.433  Sum_probs=53.7

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEe--cCCCEEEEE-eCCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGR-IGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~--~~~~w~~~~-~~g~~G~~P~~~v~~~~~~   77 (191)
                      ....++|+++|.+...++|+|.+|++|.++..  .+++||.++ .+|+.|+||.+|++.+...
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   67 (71)
T 1u5s_A            5 VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG   67 (71)
T ss_dssp             SSSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCS
T ss_pred             ccEEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeCCCCEEEEeHHHEEECCCC
Confidence            34579999999999999999999999999998  678999997 5899999999999988643

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.37  E-value=1.2e-12  Score=81.63  Aligned_cols=57  Identities=26%  Similarity=0.612  Sum_probs=52.1

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEE-eCCeeeEecCCchhcccC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR-IGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~   76 (191)
                      ..++|+++|.++..++|+|.+|+++.+++..+++||.++ .+|+.|+||++|++....
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   61 (65)
T 1b07_A            4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHH   61 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEECC-
T ss_pred             eEEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEECCCCEEEEChHHEeecCC
Confidence            368999999999999999999999999999889999999 589999999999988754

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.37  E-value=1.2e-12  Score=82.72  Aligned_cols=59  Identities=37%  Similarity=0.616  Sum_probs=53.5

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++++++|.++..++|+|++||+|.|++..+++||.++...+++.|+||.+||+.+..
T Consensus         8 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2cuc_A            8 NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSG   66 (70)
T ss_dssp             CCEECCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCC
T ss_pred             cEEEECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEECcC
Confidence            35899999999999999999999999999988899999964489999999999998864

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.36  E-value=1.1e-12  Score=82.12  Aligned_cols=58  Identities=21%  Similarity=0.428  Sum_probs=51.9

Q ss_pred             ccEEEeeeccC-CCCCCccCCCCCEEEEeEE-CCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNYKP-QNDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~-~~~~eLs~~~ge~v~v~~~-~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ..++|+|+|.+ +..++|+|++||+|.|+.+ .+++||.++..++|+.|+||.+||+.+.
T Consensus         7 ~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   66 (67)
T 2kxc_A            7 QKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE   66 (67)
T ss_dssp             CEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEESC
T ss_pred             EEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            35899999995 8999999999999999986 7889999999656999999999999874

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.36  E-value=1.3e-12  Score=81.21  Aligned_cols=56  Identities=36%  Similarity=0.793  Sum_probs=52.0

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ..++++|||.++..++|+|.+||+|.+++..+.+||.++.  +|+.|+||.+||+.+.
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~   63 (65)
T 3u23_A            8 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTL--NNKLGLFPSNFVKELE   63 (65)
T ss_dssp             CEEEECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEE--TTEEEEEEGGGEEECC
T ss_pred             eEEEEeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEE--CCCEEEeehHHEEECc
Confidence            3589999999999999999999999999998889999997  7999999999999875

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.36  E-value=1.2e-12  Score=82.58  Aligned_cols=56  Identities=27%  Similarity=0.427  Sum_probs=52.3

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEec---CCCEEEEEeCCeeeEecCCchhccc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRV---DNNWFEGRIGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~---~~~w~~~~~~g~~G~~P~~~v~~~~   75 (191)
                      ..++|+++|.++..++|+|.+|+++.|++..   +.+||.++.+|+.|+||.+|++.+.
T Consensus         4 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   62 (69)
T 1wyx_A            4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILV   62 (69)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEETTEEEEEEGGGEEEEE
T ss_pred             EEEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEECCcEEEechhhEEECC
Confidence            4689999999999999999999999999987   6899999999999999999999874

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.36  E-value=1.6e-12  Score=81.49  Aligned_cols=58  Identities=57%  Similarity=1.007  Sum_probs=52.8

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCC--eeeEecCCchhcccC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSR   76 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g--~~G~~P~~~v~~~~~   76 (191)
                      ...++|+++|.++..++|+|.+|+++.+++..+++||.++..+  +.|+||++|++.+..
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   65 (67)
T 2o9s_A            6 TGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR   65 (67)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEEEC
T ss_pred             CEEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEECCC
Confidence            3469999999999999999999999999999889999999855  999999999998754

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.36  E-value=9.6e-13  Score=83.02  Aligned_cols=59  Identities=27%  Similarity=0.616  Sum_probs=53.5

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ....++|+++|.++..++|+|.+|++|.|++. +.+||.++.+|+.|+||.+||+.+...
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (69)
T 1uhf_A            7 GGEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSG   65 (69)
T ss_dssp             CSEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCCC
T ss_pred             CCCEEEEeeeECCCCcCccCCCCCCEEEEEEe-CCCEEEEEeCCcEEEEchHHeEECCCC
Confidence            44578999999999999999999999999988 689999999999999999999988643

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.36  E-value=1.5e-12  Score=79.24  Aligned_cols=53  Identities=30%  Similarity=0.604  Sum_probs=50.3

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ   73 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~   73 (191)
                      .++|+++|.++..++|+|.+|+++.+++..+++||.++.+|+.|+||++|+++
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            5 VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE   57 (58)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEEECCCEEEEehHHEEe
Confidence            68999999999999999999999999999888999999999999999999874

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.36  E-value=1.8e-12  Score=82.63  Aligned_cols=57  Identities=37%  Similarity=0.711  Sum_probs=52.9

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++++|+|.++..++|+|++||+|.|++..+.+||.++.  +|+.|+||.+||+.+..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~   64 (73)
T 2dbm_A            8 PCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGML--HGHSGFFPINYVEILVA   64 (73)
T ss_dssp             CEEEESSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEEE--TTEEEEEESSSEEESSC
T ss_pred             CEEEEccccCCCCCCCccCCCCCEEEEEEecCCCEEEEEE--CCCEEEechHHEEEccC
Confidence            3589999999999999999999999999998899999998  79999999999999864

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.36  E-value=1.9e-12  Score=82.48  Aligned_cols=56  Identities=27%  Similarity=0.465  Sum_probs=52.2

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhcc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   74 (191)
                      ...++|+++|.++..++|+|.+|+++.+++..+.+||.++.  .|+.|+||.+||+++
T Consensus        15 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   72 (73)
T 3h0h_A           15 VTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   72 (73)
T ss_dssp             TCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEEC
Confidence            44799999999999999999999999999998899999998  899999999999875

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.36  E-value=1.8e-12  Score=80.75  Aligned_cols=56  Identities=18%  Similarity=0.372  Sum_probs=51.5

Q ss_pred             ceEEEeecCCC-CCCCCccccCCCEEEEEEecCCCEEEEE--eCCeeeEecCCchhccc
Q psy15854         20 GQARAKFNFVA-QTHLELSLVKGELVTLIRRVDNNWFEGR--IGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        20 ~~~~a~~~~~~-~~~~els~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~   75 (191)
                      ..++|+++|.+ +..++|+|.+|+++.+++..+++||.++  .+|+.|+||++||+.+.
T Consensus         6 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A            6 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             CEEEESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             cEEEEccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEECc
Confidence            36899999999 9999999999999999999889999999  47999999999998764

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.36  E-value=1.4e-12  Score=82.24  Aligned_cols=56  Identities=34%  Similarity=0.616  Sum_probs=51.9

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      .++|+|+|.++..++|+|.+||+|.++++.+.+||.++.. +|+.|+||.+||+.+.
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~   63 (69)
T 4esr_A            8 TVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIG-KGQEGYFPANHVASET   63 (69)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEEE-TTEEEEEEGGGEEEHH
T ss_pred             EEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEeC-CCCEEEEchHHeEECc
Confidence            5899999999999999999999999999988999999974 7899999999999864

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.36  E-value=1.1e-12  Score=82.62  Aligned_cols=58  Identities=40%  Similarity=0.735  Sum_probs=53.1

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ..++++|+|.++..++|+|++||+|.|++..+.+||.++.  .++.|+||.+||+.+...
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~   66 (69)
T 2dil_A            9 QEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVER--NGQRGFVPGSYLEKLSGP   66 (69)
T ss_dssp             CEEECCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGCCBCCCS
T ss_pred             cEEEECccCCccCcCccCCCCCCEEEEEECCCCCEEEEEE--CCCEEEEehHHeEEcCCC
Confidence            3589999999999999999999999999998889999998  699999999999988644

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.6e-12  Score=82.33  Aligned_cols=59  Identities=27%  Similarity=0.459  Sum_probs=53.2

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEEC---CCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKC---DDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~---~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ...++++|+|.++..++|+|++||+|.|++..   +.+||.++.  +|+.|+||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~   68 (71)
T 2cre_A            7 GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLL--HGRQGLAPANRLQILSGP   68 (71)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEES--SSCCEEEETTTEEECCCS
T ss_pred             cEEEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEE--CCCEEEEehHHEEECCCC
Confidence            34689999999999999999999999999987   889999996  799999999999988643

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.36  E-value=1.7e-12  Score=82.62  Aligned_cols=58  Identities=21%  Similarity=0.480  Sum_probs=52.5

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      .++++|||.++..++|+|.+||+|.+++..+.+||.++.  +|+.|+||.+||+.+....
T Consensus         7 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~~   64 (73)
T 3thk_A            7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKLDPAQ   64 (73)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEECCC--
T ss_pred             EEEECcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEEE--CCcEEEEehHHeEECCCCC
Confidence            589999999999999999999999999998899999997  7899999999999986543

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=2.7e-12  Score=81.82  Aligned_cols=58  Identities=40%  Similarity=0.665  Sum_probs=52.2

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEE---CCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEK---CDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~---~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ..++|+|+|.++..++|+|++||+|.|++.   .+.+||.++.  +|+.|+||.+||+.+...
T Consensus         9 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~   69 (73)
T 2dl7_A            9 CFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEF--NGRIGVFPSVLVEELSSG   69 (73)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEE--TTEEEEECSSSEEECCSS
T ss_pred             EEEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEE--CCCEEEEChHHEEECCCC
Confidence            358999999999999999999999999998   4789999997  799999999999988643

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.36  E-value=2.3e-12  Score=81.03  Aligned_cols=57  Identities=18%  Similarity=0.334  Sum_probs=51.6

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++++|+|.++..++|+|++||+|.|++.. ++||.++.. +|+.|+||.+||+.+..
T Consensus         9 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~-~g~~G~~P~~yv~~~~~   65 (68)
T 2k2m_A            9 KWVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDP-AGQEGYVPYNILTPYPA   65 (68)
T ss_dssp             CEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECT-TSCCEEEEGGGEEECCS
T ss_pred             EEEEECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeC-CCCEEEEEhhhEEEcCC
Confidence            3589999999999999999999999999986 789999875 78999999999998754

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.36  E-value=5.3e-13  Score=86.04  Aligned_cols=72  Identities=25%  Similarity=0.531  Sum_probs=62.2

Q ss_pred             CCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCCCCCCCCCCccccccCCCCCccEEEeeeccCCC
Q psy15854         30 AQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQN  109 (191)
Q Consensus        30 ~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  109 (191)
                      ++..++|+|.+|++|.|++..+.+||.++.+|+.|+||.+||+.+.....                ...++++|||.++.
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~----------------~~~~~alydy~a~~   65 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTG----------------KELVLALYDYQESG   65 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEEETTEEECCCGGGEEECCCSSC----------------CCEEEESSCCCCSS
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEEEeeEEEEcCCCCC----------------CceEEECCCcCCCC
Confidence            45678999999999999999889999999999999999999998853211                13589999999999


Q ss_pred             CCCccCCC
Q psy15854        110 DDELELRE  117 (191)
Q Consensus       110 ~~eLs~~~  117 (191)
                      .++|+|..
T Consensus        66 ~dElsf~~   73 (77)
T 2jmc_A           66 DNAPSYSP   73 (77)
T ss_dssp             CCCCCSCC
T ss_pred             CCccccCC
Confidence            99999976

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.36  E-value=7.8e-13  Score=83.15  Aligned_cols=58  Identities=36%  Similarity=0.731  Sum_probs=53.1

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ..++++|+|.++..++|+|++||+|.|++..+++||.++.  +|+.|+||.+||+.+...
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~   65 (68)
T 1wi7_A            8 RRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL--NGKTGMFPSNFIKELSGP   65 (68)
T ss_dssp             CCEEESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEECS--TTCCEEEETTSEEECCSS
T ss_pred             CEEEECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEEE--CCcEEEEchHHEEECCCC
Confidence            4599999999999999999999999999988889999996  799999999999998644

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.7e-12  Score=82.23  Aligned_cols=59  Identities=20%  Similarity=0.418  Sum_probs=54.0

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEec---CCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRV---DNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~---~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|++|.|++..   +.+||.++.+|+.|+||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   68 (71)
T 2cre_A            7 GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILSGP   68 (71)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESSSCCEEEETTTEEECCCS
T ss_pred             cEEEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEECCCEEEEehHHEEECCCC
Confidence            34789999999999999999999999999987   789999999999999999999988643

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.36  E-value=1.5e-12  Score=83.04  Aligned_cols=58  Identities=33%  Similarity=0.693  Sum_probs=53.9

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ...++|+++|.++..++|+|.+|++|.|++..+.+||.++.+|+.|+||.+|++.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (73)
T 2dbm_A            7 GPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVA   64 (73)
T ss_dssp             CCEEEESSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEEETTEEEEEESSSEEESSC
T ss_pred             CCEEEEccccCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEEccC
Confidence            3479999999999999999999999999998889999999999999999999998854

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.36  E-value=2.6e-12  Score=78.97  Aligned_cols=55  Identities=38%  Similarity=0.671  Sum_probs=50.4

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEE-EEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFG-TFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G-~vP~~~v~~i~  154 (191)
                      .++++++|.++..++|+|++||+|.+++..+++||.++.  .++.| +||.+||+.+.
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~gG~~P~~yv~~~~   60 (61)
T 1y0m_A            5 AVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDY--GGKKQLWFPSNYVEEMI   60 (61)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEEGGGEEECC
T ss_pred             EEEECcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEEE--CCeEEEEEChHHcEECC
Confidence            589999999999999999999999999998889999998  57776 99999999874

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=3.8e-12  Score=82.41  Aligned_cols=58  Identities=26%  Similarity=0.368  Sum_probs=51.8

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++|+|||.++..++|+|++||+|.|++. +++||.++...+|+.|+||.+||+.+..
T Consensus        18 ~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~~P~~yv~~~~~   75 (79)
T 2cud_A           18 DFLAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRESYIPGICVARVSG   75 (79)
T ss_dssp             CEEEESSCSSCTTTSCCSSCTTCEEEEEEE-ETTEEEEEETTTCCEEEEEGGGEEEECC
T ss_pred             eEEEEccCCCCCCCCcCCCCCCCEEEEEec-CCCeEEEEECCCCCEEEeeHHHeEEccC
Confidence            359999999999999999999999999984 6789999986568999999999998753

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=4.9e-12  Score=83.55  Aligned_cols=59  Identities=29%  Similarity=0.359  Sum_probs=53.4

Q ss_pred             cceEEEeecCCCC--CCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQ--THLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~--~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+|+|.+.  ..++|+|.+|++|.|+...+.+||.+...|+.|+||.+||+.+...
T Consensus        16 ~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   76 (88)
T 2dbk_A           16 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ   76 (88)
T ss_dssp             CEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEECSSCEEEECTTTEEECCSS
T ss_pred             CEEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEeCCCEEEEehHHeEECCCC
Confidence            3468999999955  9999999999999999998899999999999999999999998654

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.36  E-value=1.1e-12  Score=82.28  Aligned_cols=57  Identities=28%  Similarity=0.563  Sum_probs=50.3

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++|+|||.++..++|+|++||+|.|++.. ++||.++.. +|+.|+||++||+.+.+
T Consensus         5 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~-~~Ww~~~~~-~g~~G~~Psnyv~~~~~   61 (67)
T 2b86_A            5 VIVIAKWDYTAQQDQELDIKKNERLWLLDDS-KTWWRVRNA-ANRTGYVPSNYVERKLE   61 (67)
T ss_dssp             EEEEESSCBCCSSTTSCCBCTTCEEEEEECS-SSSCEEECT-TSCEEECCCCSEEEC--
T ss_pred             eEEEEeeeECCCCCCccccCCCCEEEEEecC-CCeEEEEeC-CCCEEEeChHHEeEcCC
Confidence            3589999999999999999999999999984 789999965 78999999999998754

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.36  E-value=2.4e-12  Score=83.27  Aligned_cols=59  Identities=19%  Similarity=0.420  Sum_probs=53.6

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecC----CCEEEEEeCCeeeEecCCchhcccC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD----NNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~----~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ....++|+++|.++..++|+|.+|++|.|++..+    .+||.++.+|+.|+||.+||+.+..
T Consensus        12 ~~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   74 (79)
T 1uhc_A           12 GNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTES   74 (79)
T ss_dssp             SSCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             CCeEEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeCCCEEEEchHHeEECCC
Confidence            3446999999999999999999999999999875    7999999999999999999998754

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.36  E-value=1.3e-12  Score=79.24  Aligned_cols=54  Identities=28%  Similarity=0.648  Sum_probs=49.7

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEE-eCCeeeEecCCchhcc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR-IGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~   74 (191)
                      .++|+++|.++..++|+|.+|+++.+++..+++||.++ .+|+.|+||++|++.+
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC-
T ss_pred             EEEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeCCCCEEEEeHHHEEEC
Confidence            58999999999999999999999999999889999999 5899999999999753

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.36  E-value=2.1e-12  Score=81.82  Aligned_cols=58  Identities=24%  Similarity=0.540  Sum_probs=50.8

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeE-ECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVME-KCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~-~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ...++++|||.++..++|+|++||+|.|++ ..+++||.++.. +|+.|+||.+||+...
T Consensus        11 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~   69 (71)
T 1csk_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNK-VGREGIIPANYVQKRE   69 (71)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECT-TSCEEEEETTSEEC--
T ss_pred             CCEEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeC-CCCEEEEehHHeEEcc
Confidence            346899999999999999999999999999 678899999954 7999999999998753

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.36  E-value=7.3e-13  Score=85.72  Aligned_cols=58  Identities=31%  Similarity=0.732  Sum_probs=54.1

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ...++|+++|.++..++|+|.+|++|.|+...+++||.|+..|+.|+||++||+.+..
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~~g~~G~fP~nyV~~~~~   75 (79)
T 1z9q_A           18 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKD   75 (79)
T ss_dssp             CCCEEESSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEEETTEEEEEEGGGEEESSC
T ss_pred             ceEEEEcCccCCCCCCcccccCCCEEEEeEecCCCEEEEEECCeEEEecHHHEEECCC
Confidence            4469999999999999999999999999999889999999999999999999998854

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.36  E-value=1.2e-12  Score=82.43  Aligned_cols=55  Identities=31%  Similarity=0.662  Sum_probs=49.8

Q ss_pred             cEEEeeeccCCCCC-CccCCCCCEEEEeEECC-----CCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDD-ELELREGETVFVMEKCD-----DGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~-eLs~~~ge~v~v~~~~~-----~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      +++++|+|.++..+ +|+|++||++.|+++.+     ++||.++.. +|+.|+||++||+.+
T Consensus         9 ~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~-~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            9 FARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-NGNIGYIPYNYIEII   69 (69)
T ss_dssp             CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEET-TTEEEEECGGGEEEC
T ss_pred             EEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeC-CCCEEEecHHHEEEC
Confidence            58999999999988 99999999999999875     499999985 689999999999864

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.35  E-value=1.1e-12  Score=83.41  Aligned_cols=60  Identities=20%  Similarity=0.404  Sum_probs=53.1

Q ss_pred             ccEEEeeeccC-CCCCCccCCCCCEEEEeEE-CCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         97 VPYHALYNYKP-QNDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        97 ~~~~~~~d~~~-~~~~eLs~~~ge~v~v~~~-~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ..++++|+|.+ +..++|+|++||+|.|+.. .+.+||.++..++|+.|+||.+||+.+...
T Consensus         8 ~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~~   69 (72)
T 1spk_A            8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSGP   69 (72)
T ss_dssp             CEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSSC
T ss_pred             eEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEECCCC
Confidence            35899999995 8999999999999999987 688999999965699999999999998643

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.35  E-value=1.7e-12  Score=80.03  Aligned_cols=55  Identities=27%  Similarity=0.492  Sum_probs=51.1

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhccc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   75 (191)
                      .++|+++|.++..++|+|.+|+++.+++..+++||.+++  +|+.|+||++||+.+.
T Consensus         5 ~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~~   61 (62)
T 2fpe_A            5 THRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT   61 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEECc
Confidence            589999999999999999999999999998899999984  7999999999998763

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.35  E-value=2.3e-12  Score=81.46  Aligned_cols=57  Identities=39%  Similarity=0.695  Sum_probs=52.1

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEEC--CCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~--~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++++|+|.++..++|+|++||+|.|++..  +.+||.++.  +|+.|+||.+||+.+..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~   66 (70)
T 2da9_A            8 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL--NGRRGVFPDNFVKLLSG   66 (70)
T ss_dssp             EEEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEEC--SSCEEEEEGGGEEECCC
T ss_pred             cEEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEE--CCcEEEechHHeEECCC
Confidence            4689999999999999999999999999985  789999997  79999999999998864

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.35  E-value=1.9e-12  Score=83.54  Aligned_cols=59  Identities=27%  Similarity=0.497  Sum_probs=53.7

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++++|+|.++..++|+|++||+|.|++..+.+||.++.  +|+.|+||.+||+.+....
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~~   66 (78)
T 2yuo_A            8 RRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGEL--NGLRGWFPAKFVEVLDERS   66 (78)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEECCCC
T ss_pred             eEEEECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEEE--CCCEEEEehHHEEECCCcC
Confidence            4689999999999999999999999999988899999997  7999999999999986433

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.35  E-value=1.5e-12  Score=81.56  Aligned_cols=57  Identities=23%  Similarity=0.509  Sum_probs=49.6

Q ss_pred             ccEEEeeeccCCCCCC-ccCCCCCEEEEeEE-CCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         97 VPYHALYNYKPQNDDE-LELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~e-Ls~~~ge~v~v~~~-~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .+++|+|+|.++..++ |+|++||+|.|+.. .+++||.|++..+|+.|+||.+||+.+
T Consensus         8 ~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A            8 MRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             CEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             eEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            3699999999887666 99999999999854 577999999755899999999999976

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.35  E-value=1.9e-12  Score=77.59  Aligned_cols=52  Identities=31%  Similarity=0.613  Sum_probs=48.6

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEEeCCeeeEecCCchh
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYVE   72 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~   72 (191)
                      .++|+++|.++..++|+|.+|+++.+++..+ ++||.++.+|+.|+||.+||+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEETTEEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEECCeEEEeeHHHcC
Confidence            5799999999999999999999999999875 799999999999999999984

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.35  E-value=2.3e-12  Score=81.37  Aligned_cols=59  Identities=56%  Similarity=0.967  Sum_probs=53.5

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCC--eeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g--~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|++|.|++..+++||.++..+  +.|+||.+||+.+..+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ecz_A            7 GGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISGP   67 (70)
T ss_dssp             CBCEEESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEESSSC
T ss_pred             CCEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEECCCC
Confidence            4469999999999999999999999999998888999999954  9999999999988654

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.35  E-value=2.1e-12  Score=79.71  Aligned_cols=54  Identities=31%  Similarity=0.704  Sum_probs=50.1

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeee
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER  152 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~  152 (191)
                      ..++++++|.++..++|+|++||+|.+++..+++||.++.  .++.|+||.+||+.
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~   59 (62)
T 1uj0_A            6 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGEN--HRGTGLFPSNFVTT   59 (62)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEES
T ss_pred             eEEEECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEEE--CCCEEEechhHEEE
Confidence            4589999999999999999999999999998899999998  58899999999975

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.35  E-value=9.3e-13  Score=85.22  Aligned_cols=57  Identities=23%  Similarity=0.563  Sum_probs=52.8

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++|+|+|.++..++|+|.+||+|.|++..++|||.|+.  +|+.|+||.+||+.+..
T Consensus        19 ~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~--~g~~G~fP~nyV~~~~~   75 (79)
T 1z9q_A           19 PRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTV--RGATGIFPLSFVKILKD   75 (79)
T ss_dssp             CCEEESSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEEE--TTEEEEEEGGGEEESSC
T ss_pred             eEEEEcCccCCCCCCcccccCCCEEEEeEecCCCEEEEEE--CCeEEEecHHHEEECCC
Confidence            3599999999999999999999999999999999999998  79999999999998853

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.35  E-value=2.1e-12  Score=84.35  Aligned_cols=59  Identities=20%  Similarity=0.579  Sum_probs=54.0

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ....++|+++|.++..++|+|.+|++|.|+...+++||.+..+|+.|+||++||+.+..
T Consensus        16 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   74 (83)
T 1neg_A           16 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAA   74 (83)
T ss_dssp             -CCEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCT
T ss_pred             CceEEEEccccCCCCCCccccCCCCEEEEEEecCCCEEEEEECCeEEEEEHHHEEECCC
Confidence            34479999999999999999999999999999888999998899999999999998854

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=3.7e-12  Score=82.38  Aligned_cols=60  Identities=30%  Similarity=0.618  Sum_probs=55.1

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ....++|+++|.+...++|+|.+|++|.|++..+.+||.++..|+.|+||.+||+.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (79)
T 2yun_A            6 SGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSN   65 (79)
T ss_dssp             CSEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEESSSCEEEECSTTEEEESSC
T ss_pred             CCCEEEECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEEECCCEEEEEhHHeEECCCC
Confidence            345799999999999999999999999999988889999999999999999999988654

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.35  E-value=2.3e-12  Score=82.08  Aligned_cols=58  Identities=22%  Similarity=0.588  Sum_probs=53.6

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ..++|+++|.++..++|+|.+|+++.+++..+.+||.++..|+.|+||.+|++.+...
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   63 (73)
T 3thk_A            6 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPA   63 (73)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCC-
T ss_pred             EEEEECcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEEECCcEEEEehHHeEECCCC
Confidence            4689999999999999999999999999998899999999999999999999988643

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.35  E-value=1.4e-12  Score=79.82  Aligned_cols=56  Identities=39%  Similarity=0.758  Sum_probs=49.2

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECC-CCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~-~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      ..++++++|.++..++|+|++||+|.+++..+ .+||.++.. +|+.|+||.+||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~-~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLD-SGQLGLYPANYVEAI   60 (60)
T ss_dssp             CEEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECS-SCCEEEEEGGGEEC-
T ss_pred             CEEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeC-CCCEEEecHHHEEEC
Confidence            45899999999999999999999999998754 589999984 599999999999864

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=2e-12  Score=82.85  Aligned_cols=58  Identities=31%  Similarity=0.540  Sum_probs=52.0

Q ss_pred             ccEEEeeeccCCC-------CCCccCCCCCEEEEeE-ECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         97 VPYHALYNYKPQN-------DDELELREGETVFVME-KCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        97 ~~~~~~~d~~~~~-------~~eLs~~~ge~v~v~~-~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ..++|+|+|.++.       ..+|+|++||+|.|+. ..+.+||.++.  +|+.|+||++||+.+..+
T Consensus         8 ~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~--~g~~G~fP~~yv~~~~~~   73 (75)
T 2ege_A            8 KIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGEL--GGHRGLVPAHLLDHMSLH   73 (75)
T ss_dssp             EEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEES--SSCEEEEETTTEEECCCC
T ss_pred             cEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEE--CCcEEEEChHHeEEccCC
Confidence            4589999999998       8999999999999997 46889999998  799999999999988643

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.35  E-value=2e-12  Score=80.17  Aligned_cols=55  Identities=27%  Similarity=0.616  Sum_probs=51.1

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   74 (191)
                      ..++|+++|.++..++|+|.+|+++.+++..+.+||.++.  +|+.|+||.+|++.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            7 RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             -CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            3589999999999999999999999999998899999999  899999999999875

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.35  E-value=9.2e-12  Score=81.78  Aligned_cols=58  Identities=28%  Similarity=0.590  Sum_probs=52.7

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ...++++|+|.++..++|+|++||+|.|++.. ++||.++..++|+.||||.+||+.+.
T Consensus        25 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~~   82 (86)
T 2oi3_A           25 DIIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVD   82 (86)
T ss_dssp             SEEEEESSCCCCSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEGG
T ss_pred             CcEEEECccCCCCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEcc
Confidence            34699999999999999999999999999998 59999999557999999999999874

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.35  E-value=2.1e-12  Score=84.32  Aligned_cols=56  Identities=20%  Similarity=0.503  Sum_probs=52.1

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .++|+|||.++..++|+|.+||+|.|++..+++||.+..  +|+.|+||.+||+.+..
T Consensus        19 ~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~   74 (83)
T 1neg_A           19 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKLAA   74 (83)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEECCT
T ss_pred             EEEEccccCCCCCCccccCCCCEEEEEEecCCCEEEEEE--CCeEEEEEHHHEEECCC
Confidence            589999999999999999999999999998889999976  79999999999998853

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.35  E-value=1.5e-12  Score=81.00  Aligned_cols=56  Identities=20%  Similarity=0.496  Sum_probs=50.4

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCC------CcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRS------GCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~------g~~G~vP~~~v~~i  153 (191)
                      .++|+|+|.++..++|+|++||+|.|++..+++||.++..++      |+.|+||.+||+.+
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             EEEEcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            489999999999999999999999999998899999987311      78999999999876

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.35  E-value=3.2e-12  Score=80.34  Aligned_cols=58  Identities=26%  Similarity=0.522  Sum_probs=52.2

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ...++++|+|.++..++|+|++||+|.|++.. ++||.++.. +|+.|+||.+||+.+..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~-~g~~G~~P~~yv~~~~~   64 (68)
T 1wxt_A            7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDHS-KRWWLVKNE-AGRSGYIPSNILEPLSG   64 (68)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECT-TSCEEEEEGGGEECCCC
T ss_pred             CeEEEECceECCCCcCcCCCCCCCEEEEEEcC-CCEEEEEEC-CCCEEEEEhHHcEECCC
Confidence            34699999999999999999999999999985 889999963 89999999999998864

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.35  E-value=2.4e-12  Score=78.78  Aligned_cols=55  Identities=18%  Similarity=0.559  Sum_probs=50.5

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEe-cCCCEEEEEe--CCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRR-VDNNWFEGRI--GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~-~~~~w~~~~~--~g~~G~~P~~~v~~~   74 (191)
                      ..++|+++|.++..++|+|.+|+++.+++. .+++||.++.  +|+.|+||++|++.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            3 ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            468999999999999999999999999998 4789999999  899999999999753

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.35  E-value=4.9e-12  Score=82.22  Aligned_cols=58  Identities=28%  Similarity=0.470  Sum_probs=52.5

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEE--CCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~--~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ..++|+|+|.++..++|+|++||+|.|++.  .+.+||.++.  +|+.|+||.+||+.+...
T Consensus        18 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~   77 (81)
T 1x43_A           18 RKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGER--GNQKGKVPITYLELLNSG   77 (81)
T ss_dssp             EEEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEE--TTEEEEEEGGGEEECCCC
T ss_pred             eEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEE--CCCEEEEehHHEEECCCC
Confidence            469999999999999999999999999998  4689999997  799999999999998643

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.35  E-value=1.8e-12  Score=77.74  Aligned_cols=52  Identities=35%  Similarity=0.744  Sum_probs=48.0

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECC-CCEEEEEeCCCCcEEEEcCCCee
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE  151 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~-~gw~~~~~~~~g~~G~vP~~~v~  151 (191)
                      +++++++|.++..++|+|++||+|.|++..+ .+||.++.  +|+.|+||.+||+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~--~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGEC--DGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEE--TTEEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEE--CCeEEEeeHHHcC
Confidence            4789999999999999999999999999885 79999999  7999999999985

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.34  E-value=2.6e-12  Score=81.88  Aligned_cols=57  Identities=37%  Similarity=0.697  Sum_probs=52.2

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEEC--CCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~--~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++++|+|.++..++|+|++||+|.|+...  +.+||.++.  +|+.|+||.+||+.+..
T Consensus        10 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~   68 (73)
T 2k9g_A           10 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL--NGRRGVFPDNFVKLLPP   68 (73)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEE--TTEEEEEEGGGEEECCS
T ss_pred             cEEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEE--CCeEEEEchHHEEECCc
Confidence            3589999999999999999999999999985  789999997  79999999999998864

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.34  E-value=5.9e-12  Score=83.62  Aligned_cols=60  Identities=32%  Similarity=0.513  Sum_probs=53.5

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEE--CCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~--~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++++|+|.++..++|+|++||+|.|+++  .+.+||.++.. +|+.||||.+||+.+....
T Consensus        18 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~~~~   79 (91)
T 1wx6_A           18 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNA-RGQVGLVPKNYVVVLSDGP   79 (91)
T ss_dssp             EEEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECT-TCCEEEEEGGGEEEEEESS
T ss_pred             EEEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeC-CCCEEEEchHHEEECCCcC
Confidence            358999999999999999999999999998  67899999954 7899999999999986533

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=3.7e-12  Score=80.42  Aligned_cols=60  Identities=32%  Similarity=0.545  Sum_probs=54.3

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeC--CeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG--TRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~~~~   77 (191)
                      ....++|+++|.++..++|+|.+|+++.|++..+++||.++..  |+.|+||.+||+.+..+
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ct3_A            6 SGTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSGP   67 (70)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEETTCS
T ss_pred             CCcEEEECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEECCCC
Confidence            3457999999999999999999999999999988999999984  89999999999988654

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.34  E-value=1.4e-12  Score=82.20  Aligned_cols=60  Identities=33%  Similarity=0.544  Sum_probs=52.5

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ...++++|+|.++..++|+|++||+|.|++..+++||.++.. .+..|+||.+||+.+...
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~~~~G~~P~~yv~~~~~~   66 (69)
T 2eqi_A            7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYG-TRIQQYFPSNYVEDISGP   66 (69)
T ss_dssp             CCEEEESSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEET-TEEEEEECGGGEEECCSC
T ss_pred             CcEEEECeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEEC-CCCEEEEchHHcEECccC
Confidence            346999999999999999999999999999888899999984 344599999999988643

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.34  E-value=1.7e-12  Score=81.56  Aligned_cols=57  Identities=32%  Similarity=0.622  Sum_probs=52.2

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ..++++|+|.+...++|+|++||+|.|+...+++||.++.. +|+.|+||.+||+.+.
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A           11 EEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDA-KGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             EEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEECS-SSCEEEEESTTEEECC
T ss_pred             CEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEEC-CCCEEEEehHHeEECc
Confidence            45899999999999999999999999999988899999964 7899999999999875

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.34  E-value=1.2e-12  Score=83.55  Aligned_cols=54  Identities=17%  Similarity=0.414  Sum_probs=49.8

Q ss_pred             EEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ++++++|.+ ..++|+|++||+|.|++..+++||.++.  +|+.|+||.+||+.+..
T Consensus         3 a~alydy~~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~   56 (73)
T 2kxd_A            3 APPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKLDS   56 (73)
T ss_dssp             CCCCCSSCC-CSCCCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEECCS
T ss_pred             EEEeeeeCC-CCCEeeEcCCCEEEEEEecCCCEEEEEE--CCCEEEEehHHeEEcCC
Confidence            688999998 8899999999999999998899999997  79999999999998854

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.34  E-value=2.6e-12  Score=80.93  Aligned_cols=57  Identities=21%  Similarity=0.533  Sum_probs=52.6

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhccc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~   75 (191)
                      ...++|+++|.++..++|+|.+|+++.++...+.+||.++. +|+.|+||.+|+++..
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   63 (69)
T 4esr_A            6 APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASET   63 (69)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEEETTEEEEEEGGGEEEHH
T ss_pred             cCEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEeCCCCEEEEchHHeEECc
Confidence            34799999999999999999999999999998899999998 8999999999998753

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.34  E-value=7.6e-13  Score=83.19  Aligned_cols=59  Identities=24%  Similarity=0.656  Sum_probs=54.0

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|+++.|++..+++||.++.+|+.|+||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wi7_A            7 GRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGP   65 (68)
T ss_dssp             CCCEEESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEECSTTCCEEEETTSEEECCSS
T ss_pred             CCEEEECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEEECCcEEEEchHHEEECCCC
Confidence            34699999999999999999999999999988899999999999999999999988643

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.34  E-value=1.3e-12  Score=82.39  Aligned_cols=57  Identities=37%  Similarity=0.691  Sum_probs=51.7

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ..++++|+|.++..++|+|++||+|.|++. +++||.++.  +|+.|+||.+||+.+...
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~--~g~~G~~P~~yv~~~~~~   65 (69)
T 1uhf_A            9 EEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSI--GDRSGIFPSNYVKPKDSG   65 (69)
T ss_dssp             EEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECS--TTCCEEECGGGCEECCCC
T ss_pred             CEEEEeeeECCCCcCccCCCCCCEEEEEEe-CCCEEEEEe--CCcEEEEchHHeEECCCC
Confidence            458999999999999999999999999998 789999986  789999999999988644

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.34  E-value=2.7e-12  Score=84.08  Aligned_cols=59  Identities=27%  Similarity=0.503  Sum_probs=54.2

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      .++++|+|.++..++|+|.+||+|.|++..+.+||.++..++|+.|+||.+||+.+...
T Consensus         8 ~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   66 (84)
T 4ag1_C            8 LFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSI   66 (84)
T ss_dssp             EEEESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEETTTC
T ss_pred             EEEEcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEECCCc
Confidence            58999999999999999999999999999889999999855789999999999998653

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.34  E-value=4.3e-12  Score=82.12  Aligned_cols=56  Identities=27%  Similarity=0.606  Sum_probs=51.5

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECC----CCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCD----DGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~----~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .++|+|+|.++..++|+|++||+|.|+++.+    .+||.++.  +|+.|+||.+||+.+..
T Consensus        15 ~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~   74 (79)
T 1uhc_A           15 VYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEV--NGKKGYVPSNYIRKTES   74 (79)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEES--SSCEEEEEGGGEEECCS
T ss_pred             EEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEe--CCCEEEEchHHeEECCC
Confidence            5899999999999999999999999999876    89999986  79999999999998753

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=4.1e-12  Score=82.21  Aligned_cols=59  Identities=20%  Similarity=0.394  Sum_probs=53.9

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~   77 (191)
                      ....++|+++|.++..++|+|.+|++|.|++. +.+||.++.  +|+.|+||.+||+.+..+
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~~~~   76 (79)
T 1x6b_A           16 DLPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFISGP   76 (79)
T ss_dssp             SCCEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEEESS
T ss_pred             CCCEEEECeeECCCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEECCCC
Confidence            34579999999999999999999999999999 889999999  899999999999988643

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.34  E-value=2.8e-12  Score=81.52  Aligned_cols=54  Identities=30%  Similarity=0.725  Sum_probs=49.9

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeee
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER  152 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~  152 (191)
                      ..++|+|+|.++..++|+|++||+|.|++..+++||.++.  .++.|+||.+||++
T Consensus        18 ~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~--~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           18 RKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGET--HQGIGLFPSNFVTA   71 (72)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEC--SSCEEECTTCCEEE
T ss_pred             eEEEECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEEE--CCCEEEechhhCcc
Confidence            4689999999999999999999999999988889999998  57899999999974

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.34  E-value=1.9e-12  Score=82.02  Aligned_cols=56  Identities=30%  Similarity=0.679  Sum_probs=50.5

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEE-ecCCCEEEEE-eCCeeeEecCCchhcc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIR-RVDNNWFEGR-IGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~-~~~~~w~~~~-~~g~~G~~P~~~v~~~   74 (191)
                      ...++|+++|.++..++|+|.+|+++.+++ ..+++||.++ .+|+.|+||.+||+..
T Consensus        11 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   68 (71)
T 1csk_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR   68 (71)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECTTSCEEEEETTSEEC-
T ss_pred             CCEEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeCCCCEEEEehHHeEEc
Confidence            446999999999999999999999999999 6778999999 5899999999999875

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=3.8e-12  Score=82.37  Aligned_cols=59  Identities=39%  Similarity=0.748  Sum_probs=53.6

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ...++++|+|.++..++|+|++||+|.|++..+++||.++.  +|+.|+||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~   65 (79)
T 2yun_A            7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSL--NGKKGHFPAAYVEELPSN   65 (79)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEES--SSCEEEECSTTEEEESSC
T ss_pred             CCEEEECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEEE--CCCEEEEEhHHeEECCCC
Confidence            34689999999999999999999999999998889999996  799999999999988643

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=2.7e-12  Score=84.82  Aligned_cols=59  Identities=44%  Similarity=0.822  Sum_probs=54.3

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ...++++|+|.++..++|+|++||+|.|+++.+.+||.++.  +++.||||.+||+.+...
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~~   75 (88)
T 2cub_A           17 NMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSY--NGQVGWFPSNYVTEEGDS   75 (88)
T ss_dssp             CEEEEESSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEE--TTEEEEEEGGGEEECCCC
T ss_pred             CCEEEEccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEE--CCcEEEEehHHEEECCCc
Confidence            45699999999999999999999999999999899999998  799999999999998644

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.34  E-value=1e-12  Score=83.63  Aligned_cols=59  Identities=27%  Similarity=0.488  Sum_probs=53.0

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEe-cCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRR-VDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|++|.|++. .+.+||.++.+|+.|+||.+||+.+..+
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   69 (72)
T 1ugv_A           10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             ccEEEEccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEEECCcEEEecHHHEEECCCC
Confidence            4469999999999999999999999998874 5689999999999999999999988653

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.34  E-value=1.8e-12  Score=80.67  Aligned_cols=54  Identities=22%  Similarity=0.614  Sum_probs=50.4

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeC--------CeeeEecCCchhcc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG--------TRRGIFPVTYVEQQ   74 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~--------g~~G~~P~~~v~~~   74 (191)
                      .++|+++|.++..++|+|.+|+++.+++..+++||.++..        |+.|+||.+|++.+
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             EEEEcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            5899999999999999999999999999988999999875        89999999999875

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=4.6e-12  Score=83.65  Aligned_cols=57  Identities=30%  Similarity=0.677  Sum_probs=52.6

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++++|||.++..++|+|++||+|.|++..+.+||.++.  .++.|+||.+||+.+..
T Consensus        18 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~   74 (88)
T 1x2q_A           18 RKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGEN--HRGIGLFPSNFVTTNLN   74 (88)
T ss_dssp             EEEEESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEEE--TTEEEEECGGGEESCSS
T ss_pred             eEEEEcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEEE--CCcEEEEehHHEEEcCC
Confidence            4689999999999999999999999999998899999999  58899999999998754

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.34  E-value=1.2e-12  Score=83.33  Aligned_cols=58  Identities=33%  Similarity=0.484  Sum_probs=52.0

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEE-CCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~-~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ..++++|+|.++..++|+|++||+|.|+.+ .+.+||.++.  +|+.|+||.+||+.+...
T Consensus        11 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~   69 (72)
T 1ugv_A           11 RKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTL--NGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEES--SSCEEEEEGGGEEECCSS
T ss_pred             cEEEEccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEEE--CCcEEEecHHHEEECCCC
Confidence            359999999999999999999999998874 6789999996  799999999999998654

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=3e-12  Score=81.59  Aligned_cols=60  Identities=40%  Similarity=0.733  Sum_probs=53.8

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecC--CCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~--~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ....++|+++|.++..++|+|.+|++|.|++...  .+||.++.+|+.|+||.+||+.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (73)
T 2dm1_A            6 SGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGIQ   67 (73)
T ss_dssp             SSSEEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEETTEEEEECSSSEEECCCC
T ss_pred             CCCEEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEECCeEEEeehHHEEEcCCC
Confidence            3457999999999999999999999999999874  49999999999999999999987643

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=3.2e-12  Score=82.91  Aligned_cols=58  Identities=34%  Similarity=0.668  Sum_probs=52.6

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECC--CCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCD--DGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~--~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ...++++|+|.++..++|+|++||+|.|+++.+  .+||.++.  +|+.|+||.+||+.+..
T Consensus        17 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~   76 (80)
T 2d8h_A           17 PIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKL--RGQTGIFPANYVTMNSG   76 (80)
T ss_dssp             CEEEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEE--TTEEEEEEGGGCCBCCC
T ss_pred             CEEEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEE--CCEEEEEchhHeEEcCC
Confidence            346899999999999999999999999999875  89999999  79999999999998754

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=4.1e-12  Score=82.03  Aligned_cols=59  Identities=29%  Similarity=0.588  Sum_probs=53.0

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECC-CCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~-~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      +..++++|+|.++..++|+|++||+|.|++..+ .+||.++.. +|+.|+||.+||+.+..
T Consensus        13 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~~   72 (78)
T 2dl5_A           13 PLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNK-VGQVGYVPEKYLQFPTS   72 (78)
T ss_dssp             SEEEEECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECT-TCCEEEEETTTSCCSCC
T ss_pred             CcEEEEceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeC-CCCEEEEEhHHEEECCC
Confidence            346999999999999999999999999999874 899999985 48999999999998753

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.33  E-value=2.5e-12  Score=81.48  Aligned_cols=58  Identities=26%  Similarity=0.479  Sum_probs=52.2

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEE--eCCeeeEecCCchhcccCC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR--IGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~~   77 (191)
                      ..++|+++|.++..++|+|.+|++|.|+...+.+||.++  .+|+.|+||++||+.+...
T Consensus         7 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~~~~   66 (71)
T 2fpf_A            7 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKE   66 (71)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEECC--
T ss_pred             eEEEECeeECccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEECCCC
Confidence            368999999999999999999999999999889999999  4799999999999987643

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.33  E-value=4.5e-12  Score=78.28  Aligned_cols=56  Identities=21%  Similarity=0.464  Sum_probs=50.1

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ..++|+|+|.++..++|+|.+||++.++++. +++||.++.  .|+.|+||.+||+.+.
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            6 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT--KNGQGWVPSAYITPVN   62 (63)
T ss_dssp             TEEEESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEEE--TTEEEEEEGGGEEESC
T ss_pred             EEEEEcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEEE--CCCeEEEehHHeEECC
Confidence            3589999999999999999999999999965 566999998  7899999999999874

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.2e-12  Score=83.03  Aligned_cols=59  Identities=19%  Similarity=0.355  Sum_probs=53.3

Q ss_pred             cceEEEeecCCC-CCCCCccccCCCEEEEEEecCCCEEEEE--eCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVA-QTHLELSLVKGELVTLIRRVDNNWFEGR--IGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~-~~~~els~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+|+|.+ +..++|+|.+|++|.|++..+++||.++  .+|+.|+||.+||+.+..+
T Consensus         7 ~~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~~   68 (71)
T 2gqi_A            7 GRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSGP   68 (71)
T ss_dssp             CCCEEESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEECCCS
T ss_pred             CCEEEECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEECCCC
Confidence            346999999999 9999999999999999998889999999  4799999999999988543

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.8e-12  Score=81.96  Aligned_cols=56  Identities=39%  Similarity=0.636  Sum_probs=52.2

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .++++|+|.++..++|+|++||+|.|++..+++||.++.  .++.|+||.+||+.+..
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~   65 (70)
T 2ega_A           10 QYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVST--SEEQGWVPATYLEAQNS   65 (70)
T ss_dssp             CEECCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEEC--SSCEEEEEGGGCEESCC
T ss_pred             EEEECceECCCCCCcccCCCCCEEEEEEccCCCeEEEEE--CCCEEEEehHHcEECCC
Confidence            489999999999999999999999999998899999997  68999999999998764

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=2.6e-12  Score=84.32  Aligned_cols=59  Identities=27%  Similarity=0.422  Sum_probs=53.3

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEE--CCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~--~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++|+|+|.++..++|+|++||+|.|+..  .+.+||.++.  +|+.|+||.+||+.+...+
T Consensus         9 ~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~--~g~~G~fP~~yv~~~~~~~   69 (85)
T 2dlp_A            9 GYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSA--GGRSGLFPADIVQPAAAPD   69 (85)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEES--SSCEEEEETTSEEECCCSC
T ss_pred             EEEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEE--CCEEEEechHHeEECCCcC
Confidence            358999999999999999999999999987  7889999998  6899999999999986433

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.33  E-value=4.1e-12  Score=79.82  Aligned_cols=57  Identities=16%  Similarity=0.341  Sum_probs=51.9

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcccC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   76 (191)
                      ...++|+++|.++..++|+|.+|+++.|++.. ++||.++. +|+.|+||.+|++.+..
T Consensus         8 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   65 (68)
T 2k2m_A            8 LKWVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDPAGQEGYVPYNILTPYPA   65 (68)
T ss_dssp             CCEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCCEEEEGGGEEECCS
T ss_pred             CEEEEECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeCCCCEEEEEhhhEEEcCC
Confidence            44799999999999999999999999999985 89999986 69999999999998754

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.33  E-value=3.8e-12  Score=81.12  Aligned_cols=58  Identities=21%  Similarity=0.436  Sum_probs=53.2

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeC--CeeeEecCCchhcccCC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG--TRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~~~~   77 (191)
                      ..++|+++|.++..++|+|.+|+++.|++..+++||.++..  |+.|+||.+|++.+...
T Consensus         6 ~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~~~~   65 (73)
T 2lcs_A            6 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPE   65 (73)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEECCSS
T ss_pred             CEEEECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEECCCC
Confidence            46899999999999999999999999999988999999984  89999999999988643

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.33  E-value=2.1e-12  Score=86.17  Aligned_cols=59  Identities=27%  Similarity=0.552  Sum_probs=53.6

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEec--CCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+|+|.++..++|+|.+|++|.|++..  +.+||.++.+|+.|+||.+||+.+...
T Consensus         5 ~~~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   65 (93)
T 1uff_A            5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             CCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSS
T ss_pred             CEEEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEECCCEEEechHHeEEcCCc
Confidence            34689999999999999999999999999875  679999999999999999999998654

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=2.7e-12  Score=82.28  Aligned_cols=56  Identities=21%  Similarity=0.421  Sum_probs=51.5

Q ss_pred             ceEEEeecCCCCC-------CCCccccCCCEEEEEE-ecCCCEEEEEeCCeeeEecCCchhccc
Q psy15854         20 GQARAKFNFVAQT-------HLELSLVKGELVTLIR-RVDNNWFEGRIGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        20 ~~~~a~~~~~~~~-------~~els~~~g~~i~v~~-~~~~~w~~~~~~g~~G~~P~~~v~~~~   75 (191)
                      ..++|+|+|.++.       .++|+|.+|++|.|+. ..+.+||.++.+|++|+||++||+.+.
T Consensus         8 ~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~   71 (75)
T 2ege_A            8 KIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMS   71 (75)
T ss_dssp             EEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEESSSCEEEEETTTEEECC
T ss_pred             cEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEECCcEEEEChHHeEEcc
Confidence            4699999999999       9999999999999997 467899999999999999999999874

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=7.4e-12  Score=80.79  Aligned_cols=58  Identities=19%  Similarity=0.399  Sum_probs=52.9

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEEeC-CeeeEecCCchhcccCC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIG-TRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~~~-g~~G~~P~~~v~~~~~~   77 (191)
                      ..++|+++|.++..++|+|.+|+++.|++..+ .+||.++.. |+.|+||.+||+.+...
T Consensus        14 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   73 (78)
T 2dl5_A           14 LTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPTSS   73 (78)
T ss_dssp             EEEEECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECTTCCEEEEETTTSCCSCCC
T ss_pred             cEEEEceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeCCCCEEEEEhHHEEECCCC
Confidence            36999999999999999999999999999875 899999996 99999999999988654

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=3.8e-12  Score=81.78  Aligned_cols=59  Identities=19%  Similarity=0.550  Sum_probs=52.9

Q ss_pred             cceEEEeecCCCCC-------CCCccccCCCEEEEEEecC-CCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQT-------HLELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~-------~~els~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++.       .++|+|.+|++|.|+...+ .+||.++.+|+.|+||.+||+.+..+
T Consensus         7 ~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   73 (76)
T 2csi_A            7 GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVSGP   73 (76)
T ss_dssp             SEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEETTEEEEEEGGGCCBCCCC
T ss_pred             ccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEECCcEEEEehHHEEECCCC
Confidence            44789999999998       8999999999999999866 47999999999999999999988644

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.33  E-value=2.7e-12  Score=83.10  Aligned_cols=57  Identities=26%  Similarity=0.516  Sum_probs=52.2

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhcccC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   76 (191)
                      ..++|+++|.++..++|+|.+|+++.+++..+++||.|+.  +|+.|+||.+|++.+..
T Consensus         6 ~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   64 (79)
T 3cqt_A            6 TLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDR   64 (79)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC--
T ss_pred             cEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEECCc
Confidence            3689999999999999999999999999998899999998  89999999999998864

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.33  E-value=4.5e-12  Score=79.85  Aligned_cols=57  Identities=23%  Similarity=0.456  Sum_probs=52.2

Q ss_pred             ceEEEeecCC-CCCCCCccccCCCEEEEEEecCCCEEEEEeC--CeeeEecCCchhcccC
Q psy15854         20 GQARAKFNFV-AQTHLELSLVKGELVTLIRRVDNNWFEGRIG--TRRGIFPVTYVEQQSR   76 (191)
Q Consensus        20 ~~~~a~~~~~-~~~~~els~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~~~   76 (191)
                      ..++|+++|. +...++|+|.+|+++.+++..+++||.++..  |+.|+||++|++.+..
T Consensus         3 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   62 (69)
T 1ruw_A            3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKD   62 (69)
T ss_dssp             SEEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEECCS
T ss_pred             cEEEEccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEcCC
Confidence            3689999996 9999999999999999999988999999996  9999999999998754

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=2e-12  Score=81.91  Aligned_cols=58  Identities=29%  Similarity=0.463  Sum_probs=53.0

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ..++++|+|.++..++|+|++||+|.|++..+++||.++.  .++.|+||.+||+.+...
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~   66 (71)
T 2dnu_A            9 EKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRY--LGKEGWAPASYLKKAKDS   66 (71)
T ss_dssp             EEEECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEE--TTEEEEEEGGGCEECCCC
T ss_pred             CEEEECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEE--CCcEEEEEHHHeEEccCC
Confidence            3589999999999999999999999999988899999999  589999999999988643

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.32  E-value=2.7e-12  Score=78.30  Aligned_cols=55  Identities=22%  Similarity=0.464  Sum_probs=50.7

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeC--CeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG--TRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~   74 (191)
                      ..++|+++|.++..++|+|.+|+++.+++..+++||.++..  |+.|+||.+|++.+
T Consensus         2 ~~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   58 (59)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEEC
T ss_pred             CEEEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            35899999999999999999999999999988899999984  89999999999875

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.32  E-value=5.3e-12  Score=77.97  Aligned_cols=56  Identities=25%  Similarity=0.458  Sum_probs=50.7

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEec-CCCEEEEEeCCeeeEecCCchhccc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEGRIGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   75 (191)
                      ..++|+++|.++..++|+|.+|+++.++++. +.+||.++..|+.|+||.+|++++.
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            6 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN   62 (63)
T ss_dssp             TEEEESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEEETTEEEEEEGGGEEESC
T ss_pred             EEEEEcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEEECCCeEEEehHHeEECC
Confidence            3699999999999999999999999999954 4679999999999999999998764

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.32  E-value=4.1e-12  Score=77.18  Aligned_cols=53  Identities=25%  Similarity=0.533  Sum_probs=49.5

Q ss_pred             eEEEeecC-CCCCCCCccccCCCEEEEEEecCCCEEEEEeC--CeeeEecCCchhc
Q psy15854         21 QARAKFNF-VAQTHLELSLVKGELVTLIRRVDNNWFEGRIG--TRRGIFPVTYVEQ   73 (191)
Q Consensus        21 ~~~a~~~~-~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~   73 (191)
                      .++|+++| .+...++|+|.+|+++.+++..+++||.++..  |+.|+||.+|+++
T Consensus         2 ~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             EEEEecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            57999999 89999999999999999999988999999986  9999999999875

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.32  E-value=1.6e-12  Score=85.00  Aligned_cols=58  Identities=26%  Similarity=0.403  Sum_probs=52.0

Q ss_pred             CcceEEEeecC-CCCCCCCccccCCCEEEEEEecCCCEEEEEeC------CeeeEecCCchhccc
Q psy15854         18 SEGQARAKFNF-VAQTHLELSLVKGELVTLIRRVDNNWFEGRIG------TRRGIFPVTYVEQQS   75 (191)
Q Consensus        18 ~~~~~~a~~~~-~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~------g~~G~~P~~~v~~~~   75 (191)
                      ....++|+|+| .++..++|+|.+|++|.|++..+++||.|+..      |+.|+||++||+.+.
T Consensus        17 ~~~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~   81 (83)
T 2ke9_A           17 GSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVS   81 (83)
T ss_dssp             CCEEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESSC
T ss_pred             CCeEEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEECC
Confidence            34479999999 79999999999999999999988899999984      699999999998874

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=2.7e-12  Score=81.83  Aligned_cols=57  Identities=37%  Similarity=0.728  Sum_probs=51.8

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEEC--CCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~--~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++++|+|.++..++|+|++||+|.|+++.  +.+||.++.  +|+.|+||.+||+.+..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~   66 (73)
T 2dm1_A            8 GTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGET--NGRIGWFPSTYVEEEGI   66 (73)
T ss_dssp             SEEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEE--TTEEEEECSSSEEECCC
T ss_pred             CEEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEE--CCeEEEeehHHEEEcCC
Confidence            4599999999999999999999999999987  449999997  79999999999999864

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.32  E-value=4e-12  Score=80.82  Aligned_cols=57  Identities=26%  Similarity=0.568  Sum_probs=51.5

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++|+|+|.++..++|+|++||+|.|++. +++||.++.. +|+.|+||.+||+.+..
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~-~g~~G~~P~~yv~~~~~   64 (72)
T 2jw4_A            8 VVVVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNS-MNKTGFVPSNYVERKNS   64 (72)
T ss_dssp             EEEECSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEECT-TSCEEEECTTSCEECCC
T ss_pred             eEEEECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEEC-CCCEEEEEhhHEEEcCC
Confidence            468999999999999999999999999997 5689999975 78999999999998764

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.32  E-value=1.8e-12  Score=83.27  Aligned_cols=59  Identities=32%  Similarity=0.645  Sum_probs=54.1

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ....++|+++|.++..++|+|.+|++|.|++..+.+||.++.+|+.|+||.+||+.+..
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (76)
T 1ujy_A            9 HQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKS   67 (76)
T ss_dssp             CCEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCH
T ss_pred             CCEEEEECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEECCc
Confidence            34578999999999999999999999999998889999999999999999999998753

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=4.7e-12  Score=79.53  Aligned_cols=56  Identities=30%  Similarity=0.460  Sum_probs=50.9

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ..++++|+|.++..++|+|++||+|.|++.. ++||.++.. +|+.|+||.+||+.+.
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~-~g~~G~~P~~yv~~~~   63 (68)
T 1wxb_A            8 KYVKILYDFTARNANELSVLKDEVLEVLEDG-RQWWKLRSR-SGQAGYVPCNILGEAS   63 (68)
T ss_dssp             CCEECSSCBCCSSSSBCCBCTTCEEEEEECS-SSEEEEECT-TSCEEEEETTTCCBCC
T ss_pred             EEEEECccCCCCCCCccCCCCCCEEEEEEcC-CCEEEEEEC-CCCEEEEEHHHeEECC
Confidence            3589999999999999999999999999885 889999974 7899999999999875

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.32  E-value=4.4e-12  Score=78.18  Aligned_cols=54  Identities=17%  Similarity=0.439  Sum_probs=49.1

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   74 (191)
                      ..++|+++|.++..++|+|.+|+++.+++.. ++||.+++  +|+.|+||++|++.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            7 NLVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEEC
Confidence            4799999999999999999999999999985 59999995  799999999999753

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.32  E-value=5.6e-12  Score=80.51  Aligned_cols=58  Identities=24%  Similarity=0.512  Sum_probs=52.1

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++++|+|.++..++|+|++||+|.|++.. ++||.++.  +|+.|+||.+||+.+....
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~--~g~~G~~P~~yv~~~~~~~   68 (74)
T 1j3t_A           11 LKAQALCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGEV--HGGRGWFPKSYVKIIPGSE   68 (74)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEEC-SSEEEEES--TTCCCEEEGGGEEECCCST
T ss_pred             eEEEECCCCCCCCCCccCCCCCCEEEEEecC-CCEEEEEE--CCcEEEEchHHeEECCCCC
Confidence            4699999999999999999999999999984 78999998  6899999999999986443

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.32  E-value=3.3e-12  Score=80.65  Aligned_cols=58  Identities=31%  Similarity=0.518  Sum_probs=53.1

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEE--eCCeeeEecCCchhcccCC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR--IGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~~   77 (191)
                      ..++|+++|.++..++|+|.+|+++.|++..+++||.++  .+|+.|+||.+||+.+..+
T Consensus         8 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2cuc_A            8 NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSGP   67 (70)
T ss_dssp             CCEECCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCCT
T ss_pred             cEEEECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEECcCC
Confidence            468999999999999999999999999999888999999  5899999999999988643

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.32  E-value=3.5e-12  Score=79.87  Aligned_cols=55  Identities=24%  Similarity=0.447  Sum_probs=51.5

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~   74 (191)
                      ..++|+++|.++..++|+|.+|+++.|+...+++||.++. +|+.|+||.+||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESS
T ss_pred             eEEEECccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEECCCCEEEEEhHhEEEc
Confidence            3589999999999999999999999999998899999995 899999999999987

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.31  E-value=1.9e-12  Score=83.17  Aligned_cols=59  Identities=32%  Similarity=0.667  Sum_probs=53.7

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ...++++|+|.++..++|+|++||+|.|++..+.+||.++.  +|+.|+||.+||+.+...
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~   68 (76)
T 1ujy_A           10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTL--NGRTGWFPSNYVREIKSS   68 (76)
T ss_dssp             CEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEE--TTEEEEECTTTSEECCHH
T ss_pred             CEEEEECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEEE--CCCEEEechHHEEECCcc
Confidence            34689999999999999999999999999988899999998  799999999999998644

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=6.2e-12  Score=82.51  Aligned_cols=58  Identities=26%  Similarity=0.519  Sum_probs=53.8

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEe--cCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ..++|+|+|.++..++|+|.+|++|.|+..  .+.+||.++..|+.|+||.+||+.+..+
T Consensus         9 ~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   68 (85)
T 2dlp_A            9 GYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAP   68 (85)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEESSSCEEEEETTSEEECCCS
T ss_pred             EEEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEECCEEEEechHHeEECCCc
Confidence            468999999999999999999999999987  7889999999999999999999998654

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.31  E-value=1.9e-12  Score=82.75  Aligned_cols=58  Identities=28%  Similarity=0.646  Sum_probs=51.8

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEec-CCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ...++|+++|.++..++|+|.+|++|.|++.. +.+||.++.+|+.|+||.+||+.+..
T Consensus         9 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (74)
T 1gbq_A            9 SMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPH   67 (74)
T ss_dssp             -CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEETTEEEEEEGGGEEEEC-
T ss_pred             CeEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEECCCEEEEehHhEEEcCC
Confidence            44699999999999999999999999999987 56899999999999999999987653

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.31  E-value=3.6e-12  Score=84.36  Aligned_cols=56  Identities=30%  Similarity=0.619  Sum_probs=51.1

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEec-----CCCEEEEEe-CCeeeEecCCchhc
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRV-----DNNWFEGRI-GTRRGIFPVTYVEQ   73 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~-----~~~w~~~~~-~g~~G~~P~~~v~~   73 (191)
                      ....++|+++|.++..++|+|.+|++|.|+...     +++||.|+. +|+.|+||.+||++
T Consensus        28 ~~~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~p   89 (89)
T 2rf0_A           28 AGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP   89 (89)
T ss_dssp             CCCEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEEC
T ss_pred             CCcEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCcC
Confidence            345799999999999999999999999999985     789999999 99999999999863

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.31  E-value=8.6e-12  Score=82.83  Aligned_cols=60  Identities=25%  Similarity=0.433  Sum_probs=53.8

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEe--cCCCEEEEE-eCCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGR-IGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~--~~~~w~~~~-~~g~~G~~P~~~v~~~~~~   77 (191)
                      ....++|+|+|.++..++|+|.+|++|.|++.  .+.+||+++ .+|+.|+||.+||+.+...
T Consensus        16 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   78 (91)
T 1wx6_A           16 VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG   78 (91)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECTTCCEEEEEGGGEEEEEES
T ss_pred             ccEEEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeCCCCEEEEchHHEEECCCc
Confidence            34579999999999999999999999999998  578999998 5899999999999998653

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.31  E-value=5.8e-12  Score=81.05  Aligned_cols=59  Identities=27%  Similarity=0.552  Sum_probs=52.8

Q ss_pred             ccEEEeeeccCC-CCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         97 VPYHALYNYKPQ-NDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        97 ~~~~~~~d~~~~-~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ..++++|+|.++ ..++|+|++||+|.|+... +.+||.+++. +|+.|+||.+||+.+...
T Consensus        10 ~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~-~g~~G~~P~~yv~~~~~~   70 (77)
T 2enm_A           10 TKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNN-KGEQGLVPTDYVEILPND   70 (77)
T ss_dssp             EEEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECT-TCCEEEEETTTEEEECCC
T ss_pred             cEEEECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEEC-CCCEEEeehHHeEECCCC
Confidence            468999999998 9999999999999999985 7899999964 799999999999998643

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.31  E-value=5.8e-12  Score=79.12  Aligned_cols=58  Identities=22%  Similarity=0.414  Sum_probs=52.4

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEE-eCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR-IGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|+++.|++.. ++||.++ .+|+.|+||.+||+.+..+
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wxt_A            7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDHS-KRWWLVKNEAGRSGYIPSNILEPLSGP   65 (68)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCEEEEEGGGEECCCCS
T ss_pred             CeEEEECceECCCCcCcCCCCCCCEEEEEEcC-CCEEEEEECCCCEEEEEhHHcEECCCC
Confidence            34699999999999999999999999999984 8999999 5899999999999988643

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=5.7e-12  Score=79.58  Aligned_cols=58  Identities=26%  Similarity=0.484  Sum_probs=51.9

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      +++++|+|.++..++|+|++||+|.|++.. .+|||.++.. +|+.||||.+||+.+...
T Consensus         9 ~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~-~g~~G~~P~~yv~~~~~~   67 (70)
T 2ct4_A            9 HCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRK-EGGEGYVPTSYLRVTSGP   67 (70)
T ss_dssp             EEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECS-SSCEEEEEGGGEEECCCC
T ss_pred             EEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeC-CCCEEEEEhHHeEEcCCC
Confidence            589999999999999999999999999876 4679999985 699999999999988643

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.31  E-value=1.8e-12  Score=81.45  Aligned_cols=58  Identities=28%  Similarity=0.471  Sum_probs=52.8

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEE-eCCeeeEecCCchhccc
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR-IGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~   75 (191)
                      ....++|+++|.+...++|+|.+|+++.++...+.+||.++ .+|+.|+||.+|++.+.
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A            9 TGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             CCEEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEECSSSCEEEEESTTEEECC
T ss_pred             CCCEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEehHHeEECc
Confidence            34578999999999999999999999999998888999999 58999999999998764

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.31  E-value=3.6e-12  Score=80.95  Aligned_cols=59  Identities=25%  Similarity=0.491  Sum_probs=52.8

Q ss_pred             cceEEEeecCCC-CCCCCccccCCCEEEEEEe-cCCCEEEEEeC--CeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVA-QTHLELSLVKGELVTLIRR-VDNNWFEGRIG--TRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~-~~~~els~~~g~~i~v~~~-~~~~w~~~~~~--g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.+ +..++|+|.+|++|.|+.. .+.+||.++..  |+.|+||.+||+.+..+
T Consensus         7 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~~   69 (72)
T 1spk_A            7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSGP   69 (72)
T ss_dssp             SCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSSC
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEECCCC
Confidence            347999999995 8999999999999999987 67899999996  99999999999998654

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=7.5e-12  Score=82.66  Aligned_cols=59  Identities=32%  Similarity=0.644  Sum_probs=54.5

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|++|.|++..+.+||.++..|+.|+||.+||+.+...
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   75 (88)
T 2cub_A           17 NMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDS   75 (88)
T ss_dssp             CEEEEESSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEETTEEEEEEGGGEEECCCC
T ss_pred             CCEEEEccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEECCcEEEEehHHEEECCCc
Confidence            34689999999999999999999999999998899999999999999999999988543

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.31  E-value=6.8e-12  Score=80.12  Aligned_cols=58  Identities=26%  Similarity=0.530  Sum_probs=52.9

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|++|.|++. +++||.++..|+.|+||.+||+.+...
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (74)
T 1j3t_A           10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCCS
T ss_pred             CeEEEECCCCCCCCCCccCCCCCCEEEEEec-CCCEEEEEECCcEEEEchHHeEECCCC
Confidence            3479999999999999999999999999998 478999999999999999999988653

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=3.9e-12  Score=84.39  Aligned_cols=59  Identities=46%  Similarity=0.869  Sum_probs=54.1

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeC--CeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG--TRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+|+|.++..++|+|.+|++|.|++..+++||.+++.  |+.|+||.+||+.+..+
T Consensus        17 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~~~   77 (90)
T 2yup_A           17 YGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREP   77 (90)
T ss_dssp             SEEEEECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEEECC
T ss_pred             ceEEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEcCCC
Confidence            446899999999999999999999999999888999999985  99999999999998654

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.31  E-value=2.3e-12  Score=81.14  Aligned_cols=55  Identities=31%  Similarity=0.625  Sum_probs=49.4

Q ss_pred             ceEEEeecCCCCCCC-CccccCCCEEEEEEecC-----CCEEEEEe-CCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHL-ELSLVKGELVTLIRRVD-----NNWFEGRI-GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~-els~~~g~~i~v~~~~~-----~~w~~~~~-~g~~G~~P~~~v~~~   74 (191)
                      ..++|+|+|.++..+ +|+|++|+++.|+++.+     ++||.++. +|+.|+||++||+.+
T Consensus         8 ~~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            8 HFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   69 (69)
T ss_dssp             -CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEEC
T ss_pred             eEEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEEC
Confidence            368999999999999 99999999999999875     49999999 899999999999753

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.30  E-value=2.8e-12  Score=78.00  Aligned_cols=52  Identities=19%  Similarity=0.512  Sum_probs=48.7

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEEe--CCeeeEecCCchh
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRI--GTRRGIFPVTYVE   72 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~~--~g~~G~~P~~~v~   72 (191)
                      .++|+++|.++..++|+|.+|+++.+++..+ ++||.++.  +|+.|+||++|++
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~   57 (58)
T 1zuu_A            3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   57 (58)
T ss_dssp             CCEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             EEEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEE
Confidence            4789999999999999999999999999876 79999999  8999999999986

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=8.3e-12  Score=81.88  Aligned_cols=58  Identities=21%  Similarity=0.393  Sum_probs=52.9

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhccc
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~   75 (191)
                      ....++|+|+|.++..++|+|.+|+++.|++..+.+||.++. +|+.|+||.+||+.+.
T Consensus        18 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~   76 (85)
T 2yuq_A           18 EETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKS   76 (85)
T ss_dssp             SSCEEEESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEECSSSCEEEEETTTCEECC
T ss_pred             CCeEEEECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCEEEEehHHeEEcc
Confidence            345799999999999999999999999999998889999975 8999999999999863

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=9.2e-12  Score=83.71  Aligned_cols=59  Identities=29%  Similarity=0.547  Sum_probs=52.0

Q ss_pred             ccEEEeeeccCC--------CCCCccCCCCCEEEEeEE-CCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQ--------NDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~--------~~~eLs~~~ge~v~v~~~-~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++|+|+|.++        ..++|+|++||+|.|+.+ ...|||.++.  +|+.|+||.+||+.+....
T Consensus        18 ~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~~~   85 (97)
T 2csq_A           18 RIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGET--CARLGLIPCNMVSEIQADD   85 (97)
T ss_dssp             EEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEE--TTEEEEEETTTSEECCCCS
T ss_pred             eEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEE--CCcEEEEehHHeEECCCCc
Confidence            458999999998        688999999999999965 5578999999  6999999999999987544

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.30  E-value=3.3e-12  Score=81.62  Aligned_cols=56  Identities=32%  Similarity=0.618  Sum_probs=51.3

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ..++|+|+|.++..++|+|++||+|.|++.. +.+||.++.  +|+.|+||.+||+.+.
T Consensus        10 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~   66 (74)
T 1gbq_A           10 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIEMKP   66 (74)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEE--TTEEEEEEGGGEEEEC
T ss_pred             eEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEE--CCCEEEEehHhEEEcC
Confidence            4699999999999999999999999999987 668999997  7999999999999765

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=3e-12  Score=82.28  Aligned_cols=57  Identities=35%  Similarity=0.655  Sum_probs=51.2

Q ss_pred             ccEEEeeeccCCC-------CCCccCCCCCEEEEeEECC-CCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQN-------DDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~-------~~eLs~~~ge~v~v~~~~~-~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .+++|+|+|.++.       .++|+|++||+|.|+++.+ ++||.++.  +|+.|+||.+||+.+..
T Consensus         8 ~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~   72 (76)
T 2csi_A            8 RRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGEL--NGQKGLVPSNFLEEVSG   72 (76)
T ss_dssp             EEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEE--TTEEEEEEGGGCCBCCC
T ss_pred             cEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEE--CCcEEEEehHHEEECCC
Confidence            4589999999988       8999999999999999866 48999998  79999999999998864

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.30  E-value=2.4e-12  Score=78.82  Aligned_cols=55  Identities=31%  Similarity=0.602  Sum_probs=49.0

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEEeC-CeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIG-TRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~~~-g~~G~~P~~~v~~~   74 (191)
                      ..++|+++|.++..++|+|.+|+++.+++... .+||.++.. |+.|+||.+|++.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI   60 (60)
T ss_dssp             CEEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECSSCCEEEEEGGGEEC-
T ss_pred             CEEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeCCCCEEEecHHHEEEC
Confidence            46899999999999999999999999988754 599999986 99999999999764

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.30  E-value=3.6e-12  Score=80.27  Aligned_cols=58  Identities=29%  Similarity=0.592  Sum_probs=52.4

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCee-eEecCCchhcccC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR-GIFPVTYVEQQSR   76 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~-G~~P~~~v~~~~~   76 (191)
                      ...++|+++|.++..++|+|.+|++|.|++..+++||.++..+.. |+||.+||+.+..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~~P~~yv~~~~~   65 (69)
T 2eqi_A            7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISG   65 (69)
T ss_dssp             CCEEEESSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEETTEEEEEECGGGEEECCS
T ss_pred             CcEEEECeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEchHHcEECcc
Confidence            346999999999999999999999999999888899999997766 9999999998754

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.30  E-value=4.8e-12  Score=81.37  Aligned_cols=58  Identities=28%  Similarity=0.680  Sum_probs=52.7

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCC-CcE------EEEcCCCeeecc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRS-GCF------GTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~-g~~------G~vP~~~v~~i~  154 (191)
                      ..++|+|||.++..++|+|++||+|.|++..+++||.++.... |+.      |+||.+||+.+.
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~   72 (77)
T 2d8j_A            8 QYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDS   72 (77)
T ss_dssp             EEEEESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECC
T ss_pred             CEEEEccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEcC
Confidence            4689999999999999999999999999998899999999633 788      999999999875

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.30  E-value=1.3e-11  Score=79.92  Aligned_cols=58  Identities=24%  Similarity=0.541  Sum_probs=52.8

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeC-----CeeeEecCCchhcccCC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG-----TRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~-----g~~G~~P~~~v~~~~~~   77 (191)
                      ..++|+++|.++..++|+|.+|++|.|++..+++||.++..     ++.|+||.+||+.+...
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~~~   70 (80)
T 1ue9_A            8 EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPS   70 (80)
T ss_dssp             EEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSC
T ss_pred             eEEEECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEECCCC
Confidence            36899999999999999999999999999988999999985     48999999999988654

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1e-11  Score=79.55  Aligned_cols=57  Identities=16%  Similarity=0.344  Sum_probs=51.5

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe----CCeeeEecCCchhcccC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI----GTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~----~g~~G~~P~~~v~~~~~   76 (191)
                      ...++|+|+|.++ .++|+|.+|+++.|++..+.+||.++.    +|+.|+||.+||+.+..
T Consensus        10 ~~~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~~   70 (75)
T 2egc_A           10 KDVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNS   70 (75)
T ss_dssp             CEEEEECSCBCCC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEECCS
T ss_pred             CeEEEECCCcCCC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEECCC
Confidence            3468999999999 999999999999999998889999988    46899999999998753

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=7.8e-12  Score=78.53  Aligned_cols=58  Identities=21%  Similarity=0.418  Sum_probs=52.1

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|+++.|++.. ++||.++. +|+.|+||.+|++.+..+
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wxb_A            7 GKYVKILYDFTARNANELSVLKDEVLEVLEDG-RQWWKLRSRSGQAGYVPCNILGEASGP   65 (68)
T ss_dssp             CCCEECSSCBCCSSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCEEEEETTTCCBCCCS
T ss_pred             CEEEEECccCCCCCCCccCCCCCCEEEEEEcC-CCEEEEEECCCCEEEEEHHHeEECCCC
Confidence            34689999999999999999999999999984 89999996 899999999999988643

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.30  E-value=4.8e-12  Score=82.03  Aligned_cols=58  Identities=29%  Similarity=0.598  Sum_probs=51.4

Q ss_pred             ccEEEeeeccCCCCC-CccCCCCCEEEEeEECCC-----CEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDD-ELELREGETVFVMEKCDD-----GWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~-eLs~~~ge~v~v~~~~~~-----gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++|+|+|.++..+ +|+|++||+|.|++..+.     +||.++.. +|+.|+||.+||+.+..
T Consensus        15 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~~   78 (80)
T 2v1r_A           15 EFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-NGNIGYIPYNYIEIIKR   78 (80)
T ss_dssp             EEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECT-TSCEEEEEGGGEEEC--
T ss_pred             EEEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeC-CCCeEEEEHHHeEEcCC
Confidence            358999999999999 999999999999998876     89999985 68999999999998853

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.30  E-value=1.5e-11  Score=84.33  Aligned_cols=58  Identities=28%  Similarity=0.501  Sum_probs=53.4

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhccc
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   75 (191)
                      ....++|+++|.++..++|+|.+|++|.|++..+.+||.++.  +|+.|+||.+||+.+.
T Consensus        26 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   85 (109)
T 2yt6_A           26 GVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPAD   85 (109)
T ss_dssp             SCCEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEESS
T ss_pred             CCEEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEECC
Confidence            345799999999999999999999999999998899999996  7999999999999874

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.30  E-value=5.7e-12  Score=82.51  Aligned_cols=59  Identities=24%  Similarity=0.392  Sum_probs=54.1

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+|+|.++..++|+|.+|+++.++...+.+||.++.  +|+.|+||.+|++.+...
T Consensus         6 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   66 (84)
T 4ag1_C            6 VTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSI   66 (84)
T ss_dssp             CCEEEESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEETTTC
T ss_pred             CEEEEEcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEECCCc
Confidence            34699999999999999999999999999998899999998  899999999999987643

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=5e-12  Score=82.95  Aligned_cols=58  Identities=26%  Similarity=0.497  Sum_probs=52.7

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++|+|+|.++..++|+|++||+|.|++..+.+||.++.. +|+.|+||.+||+.+..
T Consensus        20 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~g~~G~~P~~yv~~~~~   77 (85)
T 2yuq_A           20 TVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDR-NGHEGYVPSSYLVEKSP   77 (85)
T ss_dssp             CEEEESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEECS-SSCEEEEETTTCEECCC
T ss_pred             eEEEECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEEC-CCCEEEEehHHeEEccC
Confidence            35999999999999999999999999999988899999864 78999999999998743

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.1e-11  Score=79.43  Aligned_cols=58  Identities=22%  Similarity=0.471  Sum_probs=51.6

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCC--CCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQR--SGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~--~g~~G~vP~~~v~~i~~  155 (191)
                      ..++|+|+|.++ .++|+|++||+|.|+++.+.+||.++...  +++.|+||.+||+.+..
T Consensus        11 ~~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~~   70 (75)
T 2egc_A           11 DVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNS   70 (75)
T ss_dssp             EEEEECSCBCCC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEECCS
T ss_pred             eEEEECCCcCCC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEECCC
Confidence            358999999998 89999999999999999999999999853  25899999999998863

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.29  E-value=6.7e-12  Score=83.03  Aligned_cols=55  Identities=40%  Similarity=0.842  Sum_probs=50.1

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEEC-----CCCEEEEEeCCCCcEEEEcCCCeee
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKC-----DDGWYVGSSQRSGCFGTFPGNYVER  152 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-----~~gw~~~~~~~~g~~G~vP~~~v~~  152 (191)
                      ..++|+|||.++..++|+|++||+|.|+++.     ++|||.++.. +|+.|+||.+||++
T Consensus        30 ~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~-~g~~G~fP~nyV~p   89 (89)
T 2rf0_A           30 PVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLP-SGRVGVFPSNYVAP   89 (89)
T ss_dssp             CEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECT-TCCEEEEEGGGEEC
T ss_pred             cEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEEC-CCCEEEEcHHHCcC
Confidence            3699999999999999999999999999985     7899999986 68999999999974

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.29  E-value=3.4e-12  Score=79.97  Aligned_cols=57  Identities=30%  Similarity=0.484  Sum_probs=50.0

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcccCC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~   77 (191)
                      ..++|+++|.++..++|+|.+|+++.|+... ++||.++. +|+.|+||++|++.+...
T Consensus         5 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~-~~Ww~~~~~~g~~G~~Psnyv~~~~~~   62 (67)
T 2b86_A            5 VIVIAKWDYTAQQDQELDIKKNERLWLLDDS-KTWWRVRNAANRTGYVPSNYVERKLEH   62 (67)
T ss_dssp             EEEEESSCBCCSSTTSCCBCTTCEEEEEECS-SSSCEEECTTSCEEECCCCSEEEC---
T ss_pred             eEEEEeeeECCCCCCccccCCCCEEEEEecC-CCeEEEEeCCCCEEEeChHHEeEcCCC
Confidence            4689999999999999999999999999984 79999995 799999999999887543

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.29  E-value=3.8e-12  Score=83.14  Aligned_cols=58  Identities=28%  Similarity=0.505  Sum_probs=51.7

Q ss_pred             ccEEEeeec-cCCCCCCccCCCCCEEEEeEECCCCEEEEEeCC----CCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNY-KPQNDDELELREGETVFVMEKCDDGWYVGSSQR----SGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~-~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~----~g~~G~vP~~~v~~i~  154 (191)
                      ..++|+|+| .++..++|+|++||+|.|++..+++||.|+...    +|+.|+||.+||+.+.
T Consensus        19 ~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~   81 (83)
T 2ke9_A           19 LKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVS   81 (83)
T ss_dssp             EEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESSC
T ss_pred             eEEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEECC
Confidence            469999999 788999999999999999999888999999752    2789999999999875

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.29  E-value=1.3e-12  Score=81.93  Aligned_cols=59  Identities=19%  Similarity=0.420  Sum_probs=53.1

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEE-eCCeeeEecCCchhcccC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR-IGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~   76 (191)
                      ....++|+++|.++..++|+|.+|+++.|+...+.+||.++ .+|+.|+||++|++.+..
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   66 (67)
T 1aww_A            7 ELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CCCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSCC
T ss_pred             CCeEEEECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEECCCCEEEEchHhEEEcCC
Confidence            34479999999999999999999999999998888999998 589999999999987653

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1.1e-11  Score=83.36  Aligned_cols=59  Identities=17%  Similarity=0.352  Sum_probs=52.3

Q ss_pred             cceEEEeecCCCC--------CCCCccccCCCEEEEEEe-cCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQ--------THLELSLVKGELVTLIRR-VDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~--------~~~els~~~g~~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+|+|.+.        ..++|+|.+|++|.|+.. ...+||.++..|+.|+||.+||+.+...
T Consensus        17 ~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   84 (97)
T 2csq_A           17 ARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQAD   84 (97)
T ss_dssp             CEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEETTEEEEEETTTSEECCCC
T ss_pred             ceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEECCcEEEEehHHeEECCCC
Confidence            4468999999998        789999999999999965 4567999999999999999999998654

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.29  E-value=3.4e-12  Score=85.71  Aligned_cols=60  Identities=18%  Similarity=0.423  Sum_probs=53.8

Q ss_pred             CcceEEEeecCCCCC------CCCccccCCCEEEEE-EecCCCEEEEEe-CCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQT------HLELSLVKGELVTLI-RRVDNNWFEGRI-GTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~------~~els~~~g~~i~v~-~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~   77 (191)
                      ....++|+|+|.++.      .++|+|.+|++|.|+ ...+.+||.++. +|+.|+||.+||+.+...
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~g~~G~~Psnyv~~~~~~   83 (96)
T 1wie_A           16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDN   83 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSC
T ss_pred             CCcEEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEECCCCEEEEchHHEEEcCCC
Confidence            345789999999988      999999999999999 777889999999 899999999999988653

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=1.4e-11  Score=79.73  Aligned_cols=59  Identities=14%  Similarity=0.213  Sum_probs=52.2

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~   77 (191)
                      ....++|+|+|.++..++|+|.+|+++.|++. +.+||.++.  +|+.|+||.+||+.+..+
T Consensus        16 ~~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~~P~~yv~~~~~p   76 (79)
T 2cud_A           16 DSDFLAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRESYIPGICVARVSGP   76 (79)
T ss_dssp             CCCEEEESSCSSCTTTSCCSSCTTCEEEEEEE-ETTEEEEEETTTCCEEEEEGGGEEEECCC
T ss_pred             CCeEEEEccCCCCCCCCcCCCCCCCEEEEEec-CCCeEEEEECCCCCEEEeeHHHeEEccCC
Confidence            34579999999999999999999999999984 679999987  489999999999987644

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.28  E-value=3.2e-12  Score=78.26  Aligned_cols=55  Identities=24%  Similarity=0.524  Sum_probs=50.9

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcccC
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   76 (191)
                      .++|+++|.++..++|+|.+|+++.++.. +++||.++. +|+.|+||++|++.+..
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A            3 YAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIMRT   58 (60)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             EEEECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEEHHHeEEccC
Confidence            58999999999999999999999999998 889999985 89999999999998754

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.28  E-value=2e-11  Score=80.11  Aligned_cols=56  Identities=23%  Similarity=0.513  Sum_probs=51.8

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhccc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   75 (191)
                      ...++|+++|.++..++|+|.+|+++.|++.. ++||.++.  +|+.|+||.+||+.+.
T Consensus        25 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~~   82 (86)
T 2oi3_A           25 DIIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVD   82 (86)
T ss_dssp             SEEEEESSCCCCSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEGG
T ss_pred             CcEEEECccCCCCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEcc
Confidence            34789999999999999999999999999987 69999999  8999999999999874

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=6.6e-12  Score=83.91  Aligned_cols=61  Identities=39%  Similarity=0.782  Sum_probs=53.7

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEEC--C--CCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKC--D--DGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~--~--~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++|+|+|.++..++|+|++||+|.|++..  +  ++||.+++..+|+.|+||.+||+.+....
T Consensus        17 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~~~   81 (94)
T 2e5k_A           17 ETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADECS   81 (94)
T ss_dssp             EEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECCSCC
T ss_pred             eEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEcccCC
Confidence            4689999999999999999999999999873  4  89999996448999999999999987544

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.28  E-value=5.3e-12  Score=79.76  Aligned_cols=58  Identities=28%  Similarity=0.534  Sum_probs=50.2

Q ss_pred             ccEEEeeeccCCCCC--CccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         97 VPYHALYNYKPQNDD--ELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~--eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ..++++|+|.++..+  +|+|++||+|.|++. +++||.++.. +|+.|+||.+||+.+...
T Consensus         6 ~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~-~g~~G~~P~~yv~~~~~~   65 (70)
T 2vkn_A            6 YKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRA-NGETGIIPSNYVQLIDGP   65 (70)
T ss_dssp             EEEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECT-TSCEEEEEGGGEEEEEEE
T ss_pred             EEEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEEC-CCCEEEEehHHEEECCCC
Confidence            458999999998654  999999999999876 6789999865 799999999999988643

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.28  E-value=4.1e-12  Score=84.31  Aligned_cols=60  Identities=35%  Similarity=0.721  Sum_probs=51.7

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEE-------------CCC--CEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEK-------------CDD--GWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~-------------~~~--gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..+++|+|+|.++..++|+|++||+|.|+..             ...  |||.|++.++|+.|+||.+||+.+..
T Consensus        11 ~~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~~   85 (90)
T 3o5z_A           11 GFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGP   85 (90)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEEE
T ss_pred             CcEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEecc
Confidence            3469999999999999999999999999842             223  89999987679999999999999864

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.27  E-value=6.8e-12  Score=79.66  Aligned_cols=57  Identities=26%  Similarity=0.611  Sum_probs=51.1

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCC-CcE---EEEcCCCeeecc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRS-GCF---GTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~-g~~---G~vP~~~v~~i~  154 (191)
                      ..++|+|+|.++..++|+|++||+|.| +..+++||.++..+. |+.   |+||.+||+.+.
T Consensus        11 ~~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~~   71 (72)
T 2kgt_A           11 PKYVGLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE   71 (72)
T ss_dssp             CEEECCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEEC
T ss_pred             cEEEEcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEcc
Confidence            358999999999999999999999999 888889999998544 888   999999999764

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.27  E-value=1.1e-12  Score=82.26  Aligned_cols=56  Identities=36%  Similarity=0.736  Sum_probs=51.6

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      .++++|+|.++..++|+|++||+|.|++..+.+||.++.. +|+.|+||.+||+.+.
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~   65 (67)
T 1aww_A           10 KVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDK-NGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             EEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCT-TSCBCCEETTTBCCSC
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEEC-CCCEEEEchHhEEEcC
Confidence            5899999999999999999999999999988899999964 7899999999999765

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.27  E-value=1.1e-11  Score=82.43  Aligned_cols=59  Identities=31%  Similarity=0.584  Sum_probs=53.6

Q ss_pred             cceEEEeecCCCCCCC-CccccCCCEEEEEEecCC-----CEEEEEe-CCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHL-ELSLVKGELVTLIRRVDN-----NWFEGRI-GTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~-els~~~g~~i~v~~~~~~-----~w~~~~~-~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+|+|.++..+ +|+|.+|+++.|+...+.     +||.|+. +|+.|+||.+||+.+...
T Consensus        14 ~~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~~~~   79 (92)
T 1jqq_A           14 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRR   79 (92)
T ss_dssp             CEEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEECCCC
T ss_pred             CEEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEECCCC
Confidence            4479999999999999 999999999999998776     9999998 799999999999988643

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.27  E-value=2.5e-12  Score=85.68  Aligned_cols=59  Identities=24%  Similarity=0.661  Sum_probs=54.7

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+|+|.++..++|+|.+|++|.|+...+++||.++.+|+.|+||.+||+.+...
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~~g~~G~fPsnyV~~~~~~   76 (92)
T 2o2o_A           18 RRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGE   76 (92)
T ss_dssp             SCEEEECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCEETTEECCBCSSSEECCSSC
T ss_pred             CeEEEEccccCCCCCccccccCCCEEEEeEecCCCEEEEEECCeEEEeehHHEEECCCC
Confidence            44799999999999999999999999999988899999999999999999999998654

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=1.6e-11  Score=77.53  Aligned_cols=58  Identities=22%  Similarity=0.431  Sum_probs=51.9

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEEeC-CeeeEecCCchhcccC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIG-TRRGIFPVTYVEQQSR   76 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~~~-g~~G~~P~~~v~~~~~   76 (191)
                      ...++|+++|.++..++|+|.+|+++.|++..+ .+||.++.. |+.|+||.+|++.+..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ct4_A            7 GGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSG   66 (70)
T ss_dssp             SCEEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECSSSCEEEEEGGGEEECCC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeCCCCEEEEEhHHeEEcCC
Confidence            447999999999999999999999999999864 569999986 9999999999988754

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.27  E-value=8.2e-12  Score=80.29  Aligned_cols=58  Identities=24%  Similarity=0.408  Sum_probs=53.1

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeC---Cee------eEecCCchhcccC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG---TRR------GIFPVTYVEQQSR   76 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~---g~~------G~~P~~~v~~~~~   76 (191)
                      ...++|+|+|.+...++|+|.+|++|.|++..+++||.++..   |+.      |+||.+||+.+..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~~   73 (77)
T 2d8j_A            7 GQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDSG   73 (77)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECCC
T ss_pred             CCEEEEccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEcCC
Confidence            447999999999999999999999999999988999999986   888      9999999998753

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=1.8e-11  Score=79.53  Aligned_cols=58  Identities=21%  Similarity=0.420  Sum_probs=51.8

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCC-CEEEEEe--CCeeeEecCCchhccc
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDN-NWFEGRI--GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~-~w~~~~~--~g~~G~~P~~~v~~~~   75 (191)
                      ....++|+|+|.++..++|+|.+|++|.|++..+. +||.+++  +|+.|+||.+||+...
T Consensus        16 ~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   76 (81)
T 1x6g_A           16 PGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERS   76 (81)
T ss_dssp             TTCEEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CCCEEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEcc
Confidence            34579999999999999999999999999998766 9999986  6899999999998754

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.27  E-value=6.4e-12  Score=78.65  Aligned_cols=56  Identities=25%  Similarity=0.519  Sum_probs=50.6

Q ss_pred             ceEEEeecCCC-CCCCCccccCCCEEEEEEe-cCCCEEEEEeC--CeeeEecCCchhccc
Q psy15854         20 GQARAKFNFVA-QTHLELSLVKGELVTLIRR-VDNNWFEGRIG--TRRGIFPVTYVEQQS   75 (191)
Q Consensus        20 ~~~~a~~~~~~-~~~~els~~~g~~i~v~~~-~~~~w~~~~~~--g~~G~~P~~~v~~~~   75 (191)
                      ..++|+++|.+ +..++|+|.+|++|.|+.. .+++||.++..  |+.|+||++||+.+.
T Consensus         7 ~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   66 (67)
T 2kxc_A            7 QKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE   66 (67)
T ss_dssp             CEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEESC
T ss_pred             EEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            46899999995 8999999999999999985 67899999986  999999999998764

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.26  E-value=6e-12  Score=81.54  Aligned_cols=57  Identities=30%  Similarity=0.580  Sum_probs=51.9

Q ss_pred             cceEEEeecCCCCCCC-CccccCCCEEEEEEecCC-----CEEEEEe-CCeeeEecCCchhccc
Q psy15854         19 EGQARAKFNFVAQTHL-ELSLVKGELVTLIRRVDN-----NWFEGRI-GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~-els~~~g~~i~v~~~~~~-----~w~~~~~-~g~~G~~P~~~v~~~~   75 (191)
                      ...++|+++|.++..+ +|+|.+|+++.|+...+.     +||.++. +|+.|+||.+||+.+.
T Consensus        14 ~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   77 (80)
T 2v1r_A           14 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIK   77 (80)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC-
T ss_pred             CEEEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEcC
Confidence            4479999999999999 999999999999998776     9999998 7999999999999874

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.26  E-value=1.1e-11  Score=82.46  Aligned_cols=59  Identities=29%  Similarity=0.584  Sum_probs=53.0

Q ss_pred             ccEEEeeeccCCCCC-CccCCCCCEEEEeEECCC-----CEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         97 VPYHALYNYKPQNDD-ELELREGETVFVMEKCDD-----GWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~-eLs~~~ge~v~v~~~~~~-----gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ..++++|+|.++..+ +|+|++||+|.|+...+.     +||.++.. +|+.||||.+||+.+...
T Consensus        15 ~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~-~g~~G~~P~~yv~~~~~~   79 (92)
T 1jqq_A           15 EFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-NGNIGYIPYNYIEIIKRR   79 (92)
T ss_dssp             EEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEET-TSCEEEEEGGGEEECCCC
T ss_pred             EEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeC-CCCEEEEehHHeEECCCC
Confidence            358999999999999 999999999999998776     89999984 789999999999998643

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=99.26  E-value=1.3e-11  Score=76.05  Aligned_cols=60  Identities=22%  Similarity=0.542  Sum_probs=51.2

Q ss_pred             CeeeEecCCchhcccCCCCCCCCCCccccccCCCCCccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEe
Q psy15854         61 TRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSS  136 (191)
Q Consensus        61 g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~  136 (191)
                      |+.||||.+|++.+....                ....++++|||.++..++|+|++||+|.|+++.+++||.++.
T Consensus         2 g~~G~~P~~yv~~~~~~~----------------~~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~   61 (62)
T 1g2b_A            2 DRQGFVPAAYVKKLDSGT----------------GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV   61 (62)
T ss_dssp             CEEEEEEGGGEEECCCCS----------------SSCEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred             CCccccccceEeecCCCC----------------CceEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEe
Confidence            678999999999764321                123589999999999999999999999999998899999986

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.26  E-value=1.6e-11  Score=78.93  Aligned_cols=58  Identities=29%  Similarity=0.613  Sum_probs=52.7

Q ss_pred             ceEEEeecCCCC-CCCCccccCCCEEEEEEec-CCCEEEEE-eCCeeeEecCCchhcccCC
Q psy15854         20 GQARAKFNFVAQ-THLELSLVKGELVTLIRRV-DNNWFEGR-IGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        20 ~~~~a~~~~~~~-~~~els~~~g~~i~v~~~~-~~~w~~~~-~~g~~G~~P~~~v~~~~~~   77 (191)
                      ..++|+++|.++ ..++|+|.+|++|.|+... +.+||.++ .+|+.|+||.+||+.+...
T Consensus        10 ~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~~g~~G~~P~~yv~~~~~~   70 (77)
T 2enm_A           10 TKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPND   70 (77)
T ss_dssp             EEEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECTTCCEEEEETTTEEEECCC
T ss_pred             cEEEECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEECCCCEEEeehHHeEECCCC
Confidence            469999999999 9999999999999999985 68999999 5899999999999988643

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.26  E-value=9.2e-12  Score=79.02  Aligned_cols=56  Identities=20%  Similarity=0.450  Sum_probs=51.1

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe---CCee---eEecCCchhccc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI---GTRR---GIFPVTYVEQQS   75 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~---~g~~---G~~P~~~v~~~~   75 (191)
                      ...++|+++|.++..++|+|.+|+++.| ...+++||.++.   +|+.   |+||.+|++.+.
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~~   71 (72)
T 2kgt_A           10 GPKYVGLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE   71 (72)
T ss_dssp             CCEEECCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEEC
T ss_pred             CcEEEEcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEcc
Confidence            3479999999999999999999999999 887899999998   7999   999999998763

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.26  E-value=1.2e-11  Score=78.63  Aligned_cols=57  Identities=33%  Similarity=0.554  Sum_probs=51.6

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcccC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   76 (191)
                      ...++|+++|.++..++|+|.+|+++.|++. +++||.++. +|+.|+||.+||+.+..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~   64 (72)
T 2jw4_A            7 EVVVVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVERKNS   64 (72)
T ss_dssp             CEEEECSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEECTTSCEEEECTTSCEECCC
T ss_pred             CeEEEECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEECCCCEEEEEhhHEEEcCC
Confidence            3478999999999999999999999999997 579999996 89999999999998754

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.26  E-value=7.4e-12  Score=78.37  Aligned_cols=55  Identities=29%  Similarity=0.526  Sum_probs=48.4

Q ss_pred             ceEEEeecCCCCCCCC-ccccCCCEEEEEEe-cCCCEEEEE--eCCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLE-LSLVKGELVTLIRR-VDNNWFEGR--IGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~e-ls~~~g~~i~v~~~-~~~~w~~~~--~~g~~G~~P~~~v~~~   74 (191)
                      ..++|+++|.++..++ |+|.+|++|.|+.. .+++||.|+  .+|+.|+||.+||+.+
T Consensus         8 ~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A            8 MRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             CEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             eEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            4799999999988776 99999999999854 567999999  4799999999999875

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.25  E-value=3.8e-12  Score=83.16  Aligned_cols=59  Identities=34%  Similarity=0.696  Sum_probs=51.5

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEE---------------CCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEK---------------CDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~---------------~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .+++++|+|.++..++|+|++||+|.|+.+               .+.|||.|++..+|+.|+||.+||+.+..
T Consensus         6 ~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~~   79 (83)
T 3i5r_A            6 YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   79 (83)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             cEEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECCc
Confidence            468999999999999999999999999854               23489999887679999999999998864

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.25  E-value=1.1e-11  Score=86.48  Aligned_cols=61  Identities=30%  Similarity=0.536  Sum_probs=54.6

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEe-CCCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSS-QRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~-~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++++|+|.++..++|+|++||+|.|+...+++||.++. ...|+.|+||.+||+.+...+
T Consensus         4 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~~~~   65 (120)
T 2kym_A            4 LFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLMD   65 (120)
T ss_dssp             CEEEECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEECSSC
T ss_pred             EEEEEcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEccCCC
Confidence            4589999999999999999999999999998899999997 347889999999999987554

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.24  E-value=1.8e-12  Score=86.36  Aligned_cols=59  Identities=36%  Similarity=0.705  Sum_probs=53.9

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++++|+|.++..++|+|++||+|.|+...+++||.++.  +|+.|+||.+||+.+....
T Consensus        19 ~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~--~g~~G~fPsnyV~~~~~~~   77 (92)
T 2o2o_A           19 RRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL--NGKTGMFPSNFIKELSGES   77 (92)
T ss_dssp             CEEEECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCEE--TTEECCBCSSSEECCSSCS
T ss_pred             eEEEEccccCCCCCccccccCCCEEEEeEecCCCEEEEEE--CCeEEEeehHHEEECCCCC
Confidence            3699999999999999999999999999988899999998  7999999999999987543

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.24  E-value=3.4e-11  Score=82.52  Aligned_cols=58  Identities=28%  Similarity=0.625  Sum_probs=53.3

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ..++|+|||.++..++|+|++||+|.|++..+++||.++...+|+.|+||.+||+.+.
T Consensus        28 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   85 (109)
T 2yt6_A           28 TIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPAD   85 (109)
T ss_dssp             CEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEESS
T ss_pred             EEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEECC
Confidence            4699999999999999999999999999998899999997447999999999999885

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.24  E-value=3.4e-12  Score=85.67  Aligned_cols=60  Identities=30%  Similarity=0.511  Sum_probs=53.1

Q ss_pred             ccEEEeeeccCCC------CCCccCCCCCEEEEe-EECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQN------DDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~~------~~eLs~~~ge~v~v~-~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++|+|+|.++.      .++|+|++||+|.|+ ...+++||.++.. +|+.|+||.+||+.+....
T Consensus        18 ~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~-~g~~G~~Psnyv~~~~~~~   84 (96)
T 1wie_A           18 HLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL-DGQRGLVPSNFVDFVQDNE   84 (96)
T ss_dssp             EEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEET-TCCBCBCCTTSEECCCSCC
T ss_pred             cEEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEEC-CCCEEEEchHHEEEcCCCC
Confidence            3589999999987      899999999999999 7778899999975 6899999999999986543

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.24  E-value=2.5e-11  Score=75.07  Aligned_cols=61  Identities=26%  Similarity=0.602  Sum_probs=51.1

Q ss_pred             CCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCCCCCCCCCCccccccCCCCCccEEEeeeccCC
Q psy15854         32 THLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQ  108 (191)
Q Consensus        32 ~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  108 (191)
                      ..++|+|.+|+++.+++..+++||.++.+|+.|+||.+||+.+.....                ...++++|||++.
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~----------------~~~~~alydy~a~   62 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTG----------------KELVLALYDYQEK   62 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSCSTT----------------SCEEEECSCBCC-
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEcCCCCC----------------CccEEEeccccCC
Confidence            467899999999999999889999999999999999999998853210                1358999999874

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.24  E-value=3.7e-11  Score=78.93  Aligned_cols=54  Identities=30%  Similarity=0.629  Sum_probs=49.1

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeee
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER  152 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~  152 (191)
                      ..++++|+|.++..++|+|.+||+|.|++. +++||.++.. +|+.|+||.+||+.
T Consensus        32 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~-~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           32 VIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNA-ANRTGYVPSNYVER   85 (86)
T ss_dssp             EEEEESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECT-TSCEEEEEGGGBCC
T ss_pred             eEEEECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEEC-CCCEEEeehHHEEe
Confidence            469999999999999999999999999997 6799999965 78999999999974

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.23  E-value=1.3e-11  Score=84.51  Aligned_cols=59  Identities=27%  Similarity=0.422  Sum_probs=50.7

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEE-CCCC--EEEEEeCCC------CcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEK-CDDG--WYVGSSQRS------GCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~-~~~g--w~~~~~~~~------g~~G~vP~~~v~~i~~  155 (191)
                      ..++|+|+|.++..++|+|++|++|.|+.+ .+.|  ||.|+....      |+.||||++||+.+..
T Consensus        23 ~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~   90 (108)
T 1i1j_A           23 SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQT   90 (108)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEE
T ss_pred             eEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEccc
Confidence            358999999999999999999999999998 3344  999998522      8899999999998763

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.23  E-value=2.5e-11  Score=80.42  Aligned_cols=58  Identities=29%  Similarity=0.552  Sum_probs=51.7

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      .++|+|||.++..++|+|.+||++.+++. +++||.++...+|+.|+||.+||+.+...
T Consensus         5 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   62 (90)
T 3reb_B            5 IVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSG   62 (90)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEECC-
T ss_pred             EEEECCccCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEECCCC
Confidence            48999999999999999999999999988 56899999855799999999999998643

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.22  E-value=1.9e-11  Score=81.48  Aligned_cols=60  Identities=28%  Similarity=0.484  Sum_probs=52.5

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECC----CCEEEEEeCCCCc-EEEEcCCCeeeccccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCD----DGWYVGSSQRSGC-FGTFPGNYVERASLAL  157 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~----~gw~~~~~~~~g~-~G~vP~~~v~~i~~~~  157 (191)
                      ...++|+|+|.++..++|+|++||+|.|+.+.+    .+||.++.  .+. .|+||.+||+.+....
T Consensus        17 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~--~~~~~G~~P~~yv~~~~~~~   81 (93)
T 1wxu_A           17 HVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASL--DGQTTGLIPANYVKILGKRR   81 (93)
T ss_dssp             BBCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEES--SSSSCEEECSTTEEECCCBC
T ss_pred             CEEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEe--CCcCEEEEehHHEEEcCCcc
Confidence            346999999999999999999999999999876    59999987  455 9999999999986544

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.22  E-value=1.7e-11  Score=83.85  Aligned_cols=58  Identities=21%  Similarity=0.374  Sum_probs=50.9

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEe-cC--CCEEEEEeC--------CeeeEecCCchhcccC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRR-VD--NNWFEGRIG--------TRRGIFPVTYVEQQSR   76 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~-~~--~~w~~~~~~--------g~~G~~P~~~v~~~~~   76 (191)
                      ...++|+|+|.++..++|+|++|++|.|+.+ .+  +.||.|+..        |+.|+||++||+.+..
T Consensus        22 ~~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~   90 (108)
T 1i1j_A           22 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQT   90 (108)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEE
T ss_pred             eeEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEccc
Confidence            4468999999999999999999999999998 23  349999986        8999999999998754

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.22  E-value=8e-12  Score=86.54  Aligned_cols=58  Identities=34%  Similarity=0.763  Sum_probs=50.9

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeE-----ECCCCEEEEEeCC--------CCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVME-----KCDDGWYVGSSQR--------SGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~-----~~~~gw~~~~~~~--------~g~~G~vP~~~v~~i~  154 (191)
                      ..++|+|+|.++..++|+|++||+|.|+.     ..+.|||.|+..+        +|+.|+||.+||+.+.
T Consensus        45 ~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l~  115 (115)
T 1bb9_A           45 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ  115 (115)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEEC
T ss_pred             eEEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEECc
Confidence            35999999999999999999999999999     6788999998632        2789999999999763

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.21  E-value=2.1e-11  Score=77.74  Aligned_cols=56  Identities=30%  Similarity=0.612  Sum_probs=50.8

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe---CCeeeEecCCchhccc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI---GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~~~~   75 (191)
                      ...++|+++|.++..++|+|.+|+++.+++.. ++||.|+.   +|+.|+||.+|++.+.
T Consensus        11 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~~   69 (74)
T 2m0y_A           11 EKYGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLKE   69 (74)
T ss_dssp             CSCEEECSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEECC
T ss_pred             CeEEEEceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEec
Confidence            34689999999999999999999999999985 78999988   6899999999998764

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.20  E-value=2.2e-11  Score=77.69  Aligned_cols=56  Identities=38%  Similarity=0.717  Sum_probs=50.2

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCC-CCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQR-SGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~-~g~~G~vP~~~v~~i~  154 (191)
                      .++++|+|.++..++|+|.+||+|.|++.. +|||.|+..+ +|+.|+||.+||+.+.
T Consensus        13 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~~   69 (74)
T 2m0y_A           13 YGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLKE   69 (74)
T ss_dssp             CEEECSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEECC
T ss_pred             EEEEceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEec
Confidence            589999999999999999999999999985 7899999843 3899999999999764

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.20  E-value=5.4e-11  Score=74.99  Aligned_cols=46  Identities=24%  Similarity=0.395  Sum_probs=40.3

Q ss_pred             CCCCccCCCCCEEEEeEE-CCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854        109 NDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus       109 ~~~eLs~~~ge~v~v~~~-~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ..++|+|++||+|.|++. .+.+||.+++..+|+.|+||.+||+.+.
T Consensus        23 ~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~   69 (70)
T 1gcq_C           23 FGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   69 (70)
T ss_dssp             CSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             CCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEECC
Confidence            345999999999999998 5789999986668999999999999764

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.19  E-value=1e-11  Score=84.95  Aligned_cols=61  Identities=26%  Similarity=0.495  Sum_probs=52.3

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeC-CCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQ-RSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~-~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++++|||.++..++|+|++||+|.|+...+++||.++.. +.|+.|+||.+||+.+....
T Consensus         6 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~~~~~   67 (108)
T 2rqv_A            6 LYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIAT   67 (108)
T ss_dssp             CCEEESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCCCSSS
T ss_pred             eEEEECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEecCCC
Confidence            35899999999999999999999999999888999999973 12445999999999886543

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=3.8e-11  Score=80.18  Aligned_cols=59  Identities=19%  Similarity=0.438  Sum_probs=52.6

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEec--C--CCEEEEE--eCCeeeEecCCchhcccC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRV--D--NNWFEGR--IGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~--~--~~w~~~~--~~g~~G~~P~~~v~~~~~   76 (191)
                      ....++|+|+|.++..++|+|.+|++|.|+...  +  ++||.++  .+|+.|+||.+||+.+..
T Consensus        15 ~~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~   79 (94)
T 2e5k_A           15 NHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADE   79 (94)
T ss_dssp             CCEEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECCS
T ss_pred             CCeEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEccc
Confidence            345799999999999999999999999999873  4  8999999  589999999999998854

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.18  E-value=7.7e-11  Score=77.41  Aligned_cols=53  Identities=32%  Similarity=0.536  Sum_probs=48.8

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQ   73 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~   73 (191)
                      ..++|+|+|.++..++|+|.+|+++.|++. +++||.++. +|+.|+||.+||+.
T Consensus        32 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           32 VIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             EEEEESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECTTSCEEEEEGGGBCC
T ss_pred             eEEEECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEECCCCEEEeehHHEEe
Confidence            468999999999999999999999999997 679999995 89999999999964

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.18  E-value=5.1e-11  Score=85.50  Aligned_cols=57  Identities=33%  Similarity=0.673  Sum_probs=52.3

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      .++|+|||.++..++|+|++||+|.|+++. ++|||.|+.  .|+.||||.+||+.+...
T Consensus         7 ~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~--~g~~G~fP~~yv~~~~~~   64 (142)
T 2kbt_A            7 TAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEI--YGRIGWFPSNYVEEDYSE   64 (142)
T ss_dssp             EEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEE--TTEEEEEETTSEEESSCC
T ss_pred             EEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEE--CCeeEEechHHEEEcccc
Confidence            589999999999999999999999999984 789999998  799999999999998653

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.17  E-value=4.1e-11  Score=83.51  Aligned_cols=57  Identities=26%  Similarity=0.529  Sum_probs=51.1

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCC-CCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQR-SGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~-~g~~G~vP~~~v~~i~  154 (191)
                      ..++++|+|.++..++|+|++||+|.|+++. ++||.++..+ +|+.|+||.+||+.+.
T Consensus        60 ~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~~~  117 (119)
T 2rqr_A           60 RHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIKE  117 (119)
T ss_dssp             EEEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCCCC
T ss_pred             eEEEEccccCCCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEEec
Confidence            4689999999999999999999999999986 5899999855 5899999999998763

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.17  E-value=7.4e-11  Score=84.67  Aligned_cols=57  Identities=35%  Similarity=0.770  Sum_probs=52.8

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEec-CCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ..++|+++|.++..++|+|.+|++|.|+... +++||.|+..|+.|+||.+||+.+..
T Consensus         6 ~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   63 (142)
T 2kbt_A            6 GTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYS   63 (142)
T ss_dssp             CEEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEETTEEEEEETTSEEESSC
T ss_pred             eEEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEECCeeEEechHHEEEccc
Confidence            4689999999999999999999999999984 78999999999999999999998754

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.17  E-value=2.4e-12  Score=82.86  Aligned_cols=57  Identities=19%  Similarity=0.331  Sum_probs=51.6

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcc
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~   74 (191)
                      ....++|+++|.++..++|+|.+|++|.|++..+++||.++. +|+.|+||++||+..
T Consensus        19 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~   76 (77)
T 1awj_A           19 EETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEK   76 (77)
T ss_dssp             SSSCCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCSSSCCCCCBSTTCCCC
T ss_pred             CceEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCEEEEehHHEEEc
Confidence            345689999999999999999999999999988889999986 899999999999763

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.17  E-value=1e-10  Score=75.32  Aligned_cols=56  Identities=21%  Similarity=0.344  Sum_probs=45.6

Q ss_pred             EEEeeeccCCC------CCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         99 YHALYNYKPQN------DDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        99 ~~~~~d~~~~~------~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      +.++++|....      .++|+|++||+|.|++.. +.|||.|++..+|+.|+||.+||+.+.
T Consensus        15 ~~~~~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~~   77 (78)
T 1k1z_A           15 MEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   77 (78)
T ss_dssp             EEECSCBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEESC
T ss_pred             EEEEEECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEECC
Confidence            45555555443      389999999999999985 889999997448999999999998764

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.16  E-value=3.8e-11  Score=75.75  Aligned_cols=55  Identities=24%  Similarity=0.494  Sum_probs=48.8

Q ss_pred             eEEEeecCCCCCCC--CccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcccC
Q psy15854         21 QARAKFNFVAQTHL--ELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        21 ~~~a~~~~~~~~~~--els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   76 (191)
                      .++|+++|.++..+  +|+|.+|+++.|++. +.+||.++. +|+.|+||.+||+.+..
T Consensus         7 ~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~   64 (70)
T 2vkn_A            7 KAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGETGIIPSNYVQLIDG   64 (70)
T ss_dssp             EEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECTTSCEEEEEGGGEEEEEE
T ss_pred             EEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEehHHEEECCC
Confidence            58999999998755  999999999999886 689999975 89999999999998753

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.16  E-value=2.1e-11  Score=83.41  Aligned_cols=57  Identities=26%  Similarity=0.363  Sum_probs=51.5

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCee---eEecCCchhcccCC
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR---GIFPVTYVEQQSRA   77 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~---G~~P~~~v~~~~~~   77 (191)
                      .++|+|+|.++..++|+|.+|+++.|+...+++||.++..|+.   |+||.+||+.+...
T Consensus         7 ~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~~~~   66 (108)
T 2rqv_A            7 YAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIA   66 (108)
T ss_dssp             CEEESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCCCSS
T ss_pred             EEEECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEecCC
Confidence            5899999999999999999999999998888999999986655   99999999987543

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.15  E-value=6.9e-11  Score=78.26  Aligned_cols=57  Identities=21%  Similarity=0.480  Sum_probs=51.3

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhcccCC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~   77 (191)
                      ..++|+|+|.++..++|+|.+|+++.+++. +.+||.++.  +|+.|+||.+|++.+...
T Consensus         4 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   62 (90)
T 3reb_B            4 IIVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSG   62 (90)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEECC-
T ss_pred             EEEEECCccCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEECCCC
Confidence            368999999999999999999999999998 578999998  799999999999988643

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.15  E-value=1.4e-10  Score=80.72  Aligned_cols=56  Identities=27%  Similarity=0.584  Sum_probs=50.8

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe---CCeeeEecCCchhccc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI---GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~~~~   75 (191)
                      ...++|+|+|.++..++|+|.+|++|.|++.. ++||+++.   +|+.|+||.+||+.+.
T Consensus        59 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~~~  117 (119)
T 2rqr_A           59 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIKE  117 (119)
T ss_dssp             CEEEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCCCC
T ss_pred             ceEEEEccccCCCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEEec
Confidence            34689999999999999999999999999986 69999999   8999999999998753

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.14  E-value=3.4e-12  Score=80.91  Aligned_cols=58  Identities=26%  Similarity=0.603  Sum_probs=52.6

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeee-EecCCchhcccCC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRG-IFPVTYVEQQSRA   77 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G-~~P~~~v~~~~~~   77 (191)
                      ..++|+++|.++..++|+|.+|+++.|+...+++||.++..++.| +||.+||+.+...
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~gG~~P~~yv~~~~~~   65 (71)
T 1hsq_A            7 CAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             SCCCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCBCSSSCSCCEETTTCCSCSCC
T ss_pred             eEEEECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEEECCeEEeEEChHHcEECCCc
Confidence            358999999999999999999999999998889999999988886 9999999988643

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.13  E-value=5.6e-11  Score=82.26  Aligned_cols=56  Identities=29%  Similarity=0.524  Sum_probs=50.4

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEE-----ecCCCEEEEEeC----------CeeeEecCCchhcc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIR-----RVDNNWFEGRIG----------TRRGIFPVTYVEQQ   74 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~-----~~~~~w~~~~~~----------g~~G~~P~~~v~~~   74 (191)
                      ...++|+|+|.++..++|+|.+|++|.|+.     ..+.+||.|+..          |+.|+||.+||+.+
T Consensus        44 ~~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l  114 (115)
T 1bb9_A           44 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV  114 (115)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             ceEEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEEC
Confidence            346999999999999999999999999999     677899999763          78999999999875

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.13  E-value=2.5e-11  Score=79.19  Aligned_cols=57  Identities=28%  Similarity=0.479  Sum_probs=49.6

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEe---------------cCCCEEEEEe--CCeeeEecCCchhccc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRR---------------VDNNWFEGRI--GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~---------------~~~~w~~~~~--~g~~G~~P~~~v~~~~   75 (191)
                      ...++|+|+|.++..++|+|.+|++|.|+..               .+.+||.|++  +|+.|+||.+||+.+.
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~   78 (83)
T 3i5r_A            5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIG   78 (83)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEE
T ss_pred             CcEEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECC
Confidence            3468999999999999999999999999954               2348999976  5899999999998875

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.13  E-value=1.7e-12  Score=83.65  Aligned_cols=56  Identities=25%  Similarity=0.511  Sum_probs=50.7

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      ..++|+|||.++..++|+|++||+|.|++..+++||.++.. +|+.||||.+||+..
T Consensus        21 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~g~~G~~P~~yv~~~   76 (77)
T 1awj_A           21 TLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDK-NGHEGYAPSSYLVEK   76 (77)
T ss_dssp             SCCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCS-SSCCCCCBSTTCCCC
T ss_pred             eEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEEC-CCCEEEEehHHEEEc
Confidence            35899999999999999999999999999888899999873 789999999999864

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.13  E-value=3.5e-12  Score=80.79  Aligned_cols=57  Identities=35%  Similarity=0.612  Sum_probs=51.1

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEE-EEcCCCeeecccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFG-TFPGNYVERASLA  156 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G-~vP~~~v~~i~~~  156 (191)
                      .++|+|+|.++..++|+|++||+|.|+...+++||.++.  .++.| +||.+||+.+...
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~gG~~P~~yv~~~~~~   65 (71)
T 1hsq_A            8 AVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY--GGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             CCCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCBC--SSSCSCCEETTTCCSCSCC
T ss_pred             EEEECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEEE--CCeEEeEEChHHcEECCCc
Confidence            589999999999999999999999999998889999998  56665 9999999988643

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.12  E-value=1e-10  Score=81.55  Aligned_cols=58  Identities=26%  Similarity=0.407  Sum_probs=52.7

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe---CCeeeEecCCchhcccCCC
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI---GTRRGIFPVTYVEQQSRAT   78 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~~~~~~~   78 (191)
                      .++|+|+|.++..++|+|.+|+++.|+...+++||.++.   .|+.|+||.+||+.+....
T Consensus         5 ~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~~~~   65 (120)
T 2kym_A            5 FAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLMD   65 (120)
T ss_dssp             EEEECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEECSSC
T ss_pred             EEEEcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEccCCC
Confidence            689999999999999999999999999998899999985   5788999999999886543

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.12  E-value=4.5e-11  Score=79.23  Aligned_cols=59  Identities=31%  Similarity=0.457  Sum_probs=50.2

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEe---------------cCCCEEEEEe--CCeeeEecCCchhcccC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRR---------------VDNNWFEGRI--GTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~---------------~~~~w~~~~~--~g~~G~~P~~~v~~~~~   76 (191)
                      ....++|+|+|.++..++|+|.+|++|.|+..               .+.+||.|++  +|+.|+||.+||+.+..
T Consensus        10 ~~~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~~   85 (90)
T 3o5z_A           10 EGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGP   85 (90)
T ss_dssp             SEEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEEE
T ss_pred             CCcEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEecc
Confidence            34469999999999999999999999999842               1238999987  59999999999998753

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.12  E-value=4.2e-11  Score=79.84  Aligned_cols=58  Identities=26%  Similarity=0.560  Sum_probs=52.2

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecC----CCEEEEEeCCe-eeEecCCchhcccC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVD----NNWFEGRIGTR-RGIFPVTYVEQQSR   76 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~----~~w~~~~~~g~-~G~~P~~~v~~~~~   76 (191)
                      ...++|+|+|.+...++|+|.+|++|.|+...+    .+||.++..++ .|+||.+||+.+..
T Consensus        17 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~~~G~~P~~yv~~~~~   79 (93)
T 1wxu_A           17 HVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGK   79 (93)
T ss_dssp             BBCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSSSCEEECSTTEEECCC
T ss_pred             CEEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCcCEEEEehHHEEEcCC
Confidence            346999999999999999999999999999876    59999998776 99999999998854

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.10  E-value=1.8e-10  Score=71.11  Aligned_cols=45  Identities=16%  Similarity=0.452  Sum_probs=40.6

Q ss_pred             CCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854        109 NDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus       109 ~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++|+|++||+|.|++..+++||.++.  +|+.|+||.+||+.+..
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~   46 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKLDS   46 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEECSC
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEEE--CCcEEEEeHHHEEEcCC
Confidence            3579999999999999998899999986  79999999999998853

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.09  E-value=4.9e-11  Score=90.78  Aligned_cols=57  Identities=35%  Similarity=0.775  Sum_probs=50.7

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeE-----ECCCCEEEEEeCC--------CCcEEEEcCCCeeec
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVME-----KCDDGWYVGSSQR--------SGCFGTFPGNYVERA  153 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~-----~~~~gw~~~~~~~--------~g~~G~vP~~~v~~i  153 (191)
                      ..++++|+|.++..++|+|++||+|.|+.     ..+.|||.|+..+        +|+.||||.+||+.+
T Consensus       143 ~~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          143 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             EEEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             eEEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            36899999999999999999999999999     6788999999631        388999999999876

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.05  E-value=6.7e-10  Score=71.44  Aligned_cols=51  Identities=27%  Similarity=0.475  Sum_probs=42.0

Q ss_pred             EeecCCCCC---CCCccccCCCEEEEEEec-CCCEEEEEe--CCeeeEecCCchhcc
Q psy15854         24 AKFNFVAQT---HLELSLVKGELVTLIRRV-DNNWFEGRI--GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        24 a~~~~~~~~---~~els~~~g~~i~v~~~~-~~~w~~~~~--~g~~G~~P~~~v~~~   74 (191)
                      ++++|.++.   .++|+|.+|++|.|++.. +.+||.|++  +|+.|+||++||+++
T Consensus        20 a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~   76 (78)
T 1k1z_A           20 EYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   76 (78)
T ss_dssp             CBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEES
T ss_pred             ECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            344444432   489999999999999985 789999995  799999999999875

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.05  E-value=1.2e-10  Score=90.21  Aligned_cols=60  Identities=22%  Similarity=0.504  Sum_probs=54.8

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++|+|||.++..++|+|++||+|.|+++.+++||.++.. +|+.|+||.+||+.+....
T Consensus       137 ~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~~~~  196 (230)
T 2dvj_A          137 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS-EGKRGMIPVPYVEKYRPAS  196 (230)
T ss_dssp             CCCBCCSCCCCSSSSSCCCCSSCBCCCCBCSCSSEEEEECT-TSCEEEEEGGGSCCCCSSC
T ss_pred             eeEEEeeeecCCCCCCccCcCCCEEEEEEccCCCcEEEEeC-CCCEEEEehHHeEEcCCCC
Confidence            45899999999999999999999999999999999999954 7999999999999987655

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.04  E-value=3.5e-10  Score=83.78  Aligned_cols=55  Identities=20%  Similarity=0.509  Sum_probs=50.7

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeee
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER  152 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~  152 (191)
                      ..++++|||.++..++|+|++||+|.|+++.+++||.|+.. +|+.|+||.+||+.
T Consensus       119 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          119 EVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNA-LGTTGLVPANYVQI  173 (174)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECT-TCCEEEEEGGGEEE
T ss_pred             cEEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEEC-CCCEEEEChHHEEe
Confidence            46899999999999999999999999999989999999963 78999999999974

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.04  E-value=4.7e-10  Score=85.75  Aligned_cols=59  Identities=29%  Similarity=0.603  Sum_probs=54.4

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ....++|+++|.++..++|+|.+|+++.|+...+++||.|+.+|+.|+||.+||+.+..
T Consensus       157 ~~~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~  215 (217)
T 1gri_A          157 QPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR  215 (217)
T ss_dssp             CCCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEEECC
T ss_pred             CceEEEecCCccCCCCCcCCCCCCCEEEEEEeCCCCeEEEEECCeEEEEeHHHeEECCC
Confidence            34579999999999999999999999999999888999999999999999999998753

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.03  E-value=1.1e-09  Score=82.38  Aligned_cols=58  Identities=26%  Similarity=0.422  Sum_probs=54.0

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ...++|+++|.+...++|+|.+|++|.|+...+++||.++.+|+.||||.+||+.+..
T Consensus        81 ~~~~~al~dy~a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  138 (193)
T 1ng2_A           81 GEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ  138 (193)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             ceeeeeccccCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCEEEEehHHeEECCC
Confidence            3468999999999999999999999999999889999999999999999999998865

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.03  E-value=3.7e-10  Score=85.95  Aligned_cols=55  Identities=29%  Similarity=0.546  Sum_probs=50.2

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEE-----ecCCCEEEEEe----------CCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIR-----RVDNNWFEGRI----------GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~-----~~~~~w~~~~~----------~g~~G~~P~~~v~~~   74 (191)
                      ..++|+|+|.++..++|+|.+|++|.|+.     ..+.+||.|+.          +|+.||||.+||+.+
T Consensus       143 ~~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          143 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             EEEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             eEEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            36899999999999999999999999999     67789999996          389999999999865

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.03  E-value=3.5e-10  Score=83.81  Aligned_cols=56  Identities=21%  Similarity=0.513  Sum_probs=51.5

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhc
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQ   73 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~   73 (191)
                      ....++|+++|.++..++|+|.+|+++.|++..+++||.++. +|+.|+||++||+.
T Consensus       117 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          117 IIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI  173 (174)
T ss_dssp             CSEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTCCEEEEEGGGEEE
T ss_pred             cccEEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEECCCCEEEEChHHEEe
Confidence            345789999999999999999999999999998899999995 89999999999974

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.02  E-value=1.6e-09  Score=87.06  Aligned_cols=60  Identities=22%  Similarity=0.504  Sum_probs=54.5

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++++|+|.++..++|+|++||+|.|++..+++||.++.. +|+.|+||.+||+.+....
T Consensus       135 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~~~~~  194 (304)
T 2eyz_A          135 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS-EGKRGMIPVPYVEKYRPAS  194 (304)
T ss_dssp             CEEEECSCCCCSCSSSCCCCTTCEEEEEECCSSSEEEEECT-TSCEEEEESTTEEECCCST
T ss_pred             eeEEEEeeecCCCCCcCcccCCCEEEEEEecCCCcEEEEeC-CCceeccchhccccccCCC
Confidence            46899999999999999999999999999988999999954 7999999999999987653

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.02  E-value=4.9e-10  Score=70.52  Aligned_cols=54  Identities=26%  Similarity=0.436  Sum_probs=43.0

Q ss_pred             eEEEeecCCCC------CCCCccccCCCEEEEEEe-cCCCEEEEEe--CCeeeEecCCchhcc
Q psy15854         21 QARAKFNFVAQ------THLELSLVKGELVTLIRR-VDNNWFEGRI--GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        21 ~~~a~~~~~~~------~~~els~~~g~~i~v~~~-~~~~w~~~~~--~g~~G~~P~~~v~~~   74 (191)
                      .+.+++.|...      ..++|+|++|++|.|++. .+.+||.+++  +|+.|+||++||+++
T Consensus         6 ~~~~~~~y~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~   68 (70)
T 1gcq_C            6 KMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (70)
T ss_dssp             EEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             cceEEEEEEecCCCCCCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEEC
Confidence            34555555443      344999999999999998 5789999964  799999999999875

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.01  E-value=5.9e-10  Score=88.36  Aligned_cols=59  Identities=37%  Similarity=0.679  Sum_probs=54.2

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++|+|||.++..++|+|.+||++.|++..++|||.|+.  +|+.|+||.+||+.+....
T Consensus         3 ~~~~a~~~~~~~~~~el~~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~~   61 (283)
T 3jv3_A            3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEV--SGQVGLFPSNYVKLTTDMD   61 (283)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEE--TTEEEEEEGGGEEEGGGSC
T ss_pred             eEEEEccccCCCCCCcCCCCCCCEEEEEecCCCCEEEEEE--CCCCCcCCCccccccCccc
Confidence            4589999999999999999999999999999999999997  7999999999999987644

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.00  E-value=5.5e-10  Score=88.53  Aligned_cols=58  Identities=26%  Similarity=0.655  Sum_probs=54.0

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ..++|+|||.++..++|+|.+|+.+.|+...+++||.|+.+|+.|+||++||+.+...
T Consensus         3 ~~~~a~~~~~~~~~~el~~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   60 (283)
T 3jv3_A            3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDM   60 (283)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEETTEEEEEEGGGEEEGGGS
T ss_pred             eEEEEccccCCCCCCcCCCCCCCEEEEEecCCCCEEEEEECCCCCcCCCccccccCcc
Confidence            4689999999999999999999999999998899999999999999999999987653

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=98.99  E-value=5.5e-10  Score=71.69  Aligned_cols=53  Identities=21%  Similarity=0.381  Sum_probs=46.6

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEEC--CCCEEEEEeCC--CCcEEEEcCCCe
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQR--SGCFGTFPGNYV  150 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~--~~gw~~~~~~~--~g~~G~vP~~~v  150 (191)
                      .+.++|||.++...||+|++||++.|++..  +++||.++...  .+++|+||.+||
T Consensus        19 ~~valydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           19 LTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             EEECSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             EEEEEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            378999999999999999999999999987  47899999732  347899999999

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=98.98  E-value=7.9e-10  Score=81.93  Aligned_cols=56  Identities=16%  Similarity=0.453  Sum_probs=51.1

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhccc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   75 (191)
                      ...++|+|||.++..++|+|.+|+++.|++. +++||.++.  +|+.|+||.+|++...
T Consensus        12 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~~~   69 (175)
T 4d8k_A           12 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKAN   69 (175)
T ss_dssp             -CEEEESSCBCCCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             CcEEEEccCcCCcCCcccccccCCEEEEEcc-CCCEEEEEECCCCceeeeccccccccc
Confidence            3479999999999999999999999999998 679999998  7999999999998764

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=98.98  E-value=1e-09  Score=81.37  Aligned_cols=57  Identities=30%  Similarity=0.555  Sum_probs=51.5

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ..++|+|||.++..++|+|++||++.|++. +++||.++...+|+.|+||.+|++.+.
T Consensus        13 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~~~   69 (175)
T 4d8k_A           13 NLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKAN   69 (175)
T ss_dssp             CEEEESSCBCCCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             cEEEEccCcCCcCCcccccccCCEEEEEcc-CCCEEEEEECCCCceeeeccccccccc
Confidence            359999999999999999999999999998 678999998557999999999999753

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=98.93  E-value=7e-10  Score=85.78  Aligned_cols=59  Identities=27%  Similarity=0.596  Sum_probs=54.1

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEE-eCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR-IGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|.++..++|+|.+|+++.|++..+++||.++ .+|+.|+||++||+.+...
T Consensus       136 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~  195 (230)
T 2dvj_A          136 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPA  195 (230)
T ss_dssp             CCCCBCCSCCCCSSSSSCCCCSSCBCCCCBCSCSSEEEEECTTSCEEEEEGGGSCCCCSS
T ss_pred             ceeEEEeeeecCCCCCCccCcCCCEEEEEEccCCCcEEEEeCCCCEEEEehHHeEEcCCC
Confidence            4468999999999999999999999999999889999999 5899999999999998654

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=98.93  E-value=1.4e-09  Score=87.66  Aligned_cols=55  Identities=20%  Similarity=0.509  Sum_probs=50.9

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeee
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER  152 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~  152 (191)
                      ..++++|||.++..++|+|++||+|.|+++.+.+||.+++. +|+.|+||.+||+.
T Consensus       148 ~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~  202 (308)
T 3qwy_A          148 EVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNA-LGTTGLVPANYVQI  202 (308)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECT-TSCEEEEEGGGEEE
T ss_pred             eeEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeC-CCCeeEeccccccc
Confidence            46999999999999999999999999999999999999974 78999999999994

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=98.90  E-value=2.6e-09  Score=79.79  Aligned_cols=58  Identities=26%  Similarity=0.530  Sum_probs=50.9

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCC-CCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQR-SGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~-~g~~G~vP~~~v~~i~~  155 (191)
                      ..++|+|+|.++..++|+|.+||+|.|++..+ +||.|+..+ +|+.|+||.+||+.+..
T Consensus        18 ~~~~Alydf~~~~~~eLs~~~Gd~i~v~~~~~-~W~~g~~~~~~g~~G~fP~nyV~~~~~   76 (184)
T 3a98_A           18 RHGVAIYNFQGSGAPQLSLQIGDVVRIQETCG-DWYRGYLIKHKMLQGIFPKSFIHIKEV   76 (184)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEEET-TEEEEEETTEEEEEEEEEGGGEEEECC
T ss_pred             eEEEEeeeeCCCCCCCCCcCCCCEEEEEecCC-CEEEEEEecCCCceEEECcceEEEecc
Confidence            36899999999999999999999999999876 599999732 46899999999998764

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=98.89  E-value=2.7e-09  Score=87.07  Aligned_cols=58  Identities=22%  Similarity=0.540  Sum_probs=53.5

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ..++|+|+|.++..++|+|++||+|.++++.++|||.|+.  +|+.|+||.+||+.+...
T Consensus       175 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~  232 (341)
T 2dyb_A          175 PRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTV--RGATGIFPLSFVKILKDF  232 (341)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEEE--TTEEEEEEGGGEEEEECC
T ss_pred             cEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEEE--CCcEEEechHHeEEcCCC
Confidence            4689999999999999999999999999999999999997  799999999999998653

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=98.88  E-value=2.5e-09  Score=79.97  Aligned_cols=57  Identities=26%  Similarity=0.561  Sum_probs=51.5

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe---CCeeeEecCCchhcccC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI---GTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~~~~~   76 (191)
                      ...++|+|+|.++..++|+|.+|+.+.+++..+ +||.|+.   +|+.|+||++||+....
T Consensus        17 ~~~~~Alydf~~~~~~eLs~~~Gd~i~v~~~~~-~W~~g~~~~~~g~~G~fP~nyV~~~~~   76 (184)
T 3a98_A           17 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCG-DWYRGYLIKHKMLQGIFPKSFIHIKEV   76 (184)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEEET-TEEEEEETTEEEEEEEEEGGGEEEECC
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCEEEEEecCC-CEEEEEEecCCCceEEECcceEEEecc
Confidence            457999999999999999999999999999876 5999998   68999999999998754

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=98.86  E-value=3.3e-09  Score=68.09  Aligned_cols=54  Identities=24%  Similarity=0.326  Sum_probs=47.1

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecC--CCEEEEEe----CCeeeEecCCchh
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRI----GTRRGIFPVTYVE   72 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~--~~w~~~~~----~g~~G~~P~~~v~   72 (191)
                      ...+.++++|.+...+||+|.+|+.+.+++...  ++||+++.    .+++|+||.+|+.
T Consensus        17 ~e~~valydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl~   76 (82)
T 1u3o_A           17 CELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTLC   76 (82)
T ss_dssp             CEEEECSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGSC
T ss_pred             ceEEEEEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEEe
Confidence            345789999999999999999999999998764  79999987    2378999999983

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=98.86  E-value=4.7e-09  Score=88.91  Aligned_cols=60  Identities=25%  Similarity=0.426  Sum_probs=54.4

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ...++|+|||.+...++|+|.+||+|.|+...++|||.|+.  +|+.||||.+||+.+....
T Consensus        30 ~~~~~al~~~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~~   89 (466)
T 2pz1_A           30 VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRV--ADGEGWFPASFVRLRVNQD   89 (466)
T ss_dssp             CEEEEESSCBCCCCTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEECSCC-
T ss_pred             ccEEEEccccCCCCCCcCCCCCCCEEEEEEecCCCEEEEEE--CCcEEEEehhHeeeccCcc
Confidence            45689999999999999999999999999998999999998  6899999999999976654

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=98.83  E-value=6.2e-09  Score=88.18  Aligned_cols=59  Identities=22%  Similarity=0.501  Sum_probs=54.6

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+|+|.++..++|+|.+|+++.|+...+++||.|+..|+.||||.+||+.+...
T Consensus        30 ~~~~~al~~~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   88 (466)
T 2pz1_A           30 VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQ   88 (466)
T ss_dssp             CEEEEESSCBCCCCTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSCC
T ss_pred             ccEEEEccccCCCCCCcCCCCCCCEEEEEEecCCCEEEEEECCcEEEEehhHeeeccCc
Confidence            34689999999999999999999999999998899999999999999999999987553

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=98.83  E-value=4e-09  Score=90.73  Aligned_cols=56  Identities=21%  Similarity=0.493  Sum_probs=51.8

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhccc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   75 (191)
                      ..++|+|||+++..+||+|.+||++.|++..+++||.++.  +|++|+||.+||+...
T Consensus        86 ~~~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~  143 (535)
T 2h8h_A           86 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD  143 (535)
T ss_dssp             -CEEESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             cEEEEccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhcccc
Confidence            3589999999999999999999999999998899999999  7999999999998754

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=98.82  E-value=7.8e-09  Score=88.66  Aligned_cols=60  Identities=23%  Similarity=0.377  Sum_probs=54.6

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ...++|+|+|.++..+||+|++||+|.|++..++|||.|+..++|+.|+||.+||+.+..
T Consensus       442 ~~~~~aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~~~  501 (526)
T 2de0_X          442 AHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIE  501 (526)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEECCC
T ss_pred             ccceEEeecCCCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEccc
Confidence            346899999999999999999999999999999999999975589999999999998754

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=98.81  E-value=1.6e-09  Score=69.47  Aligned_cols=48  Identities=15%  Similarity=0.423  Sum_probs=42.6

Q ss_pred             CCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854        107 PQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus       107 ~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      ++..++|+|++||+|.|+...+++||.++.  +|+.||||.+||+.+...
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~~~   49 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKLDSG   49 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEEE--TTEEECCCGGGEEECCCS
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEEE--CCcEEEEEeeEEEEcCCC
Confidence            346689999999999999998899999997  799999999999998643

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=98.80  E-value=7.2e-09  Score=89.16  Aligned_cols=57  Identities=26%  Similarity=0.691  Sum_probs=52.9

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      .++|+|||.++..++|+|++||++.|++..+++||.++...+|+.|+||.+||+...
T Consensus        87 ~~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~  143 (535)
T 2h8h_A           87 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD  143 (535)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             EEEEccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhcccc
Confidence            589999999999999999999999999998899999998656899999999999864

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=98.79  E-value=6.8e-09  Score=87.42  Aligned_cols=57  Identities=26%  Similarity=0.691  Sum_probs=52.7

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      .++|+|||.++..++|+|++||++.|++..+++||.++...+|+.|+||.+||+...
T Consensus         4 ~~~al~~~~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~   60 (452)
T 1fmk_A            4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD   60 (452)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             EEEECCccCCCCCCCCCccCCCEEEEeccCCCCceEEEEcCCCcccccCcccccccc
Confidence            489999999999999999999999999998899999998656999999999999864

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=98.76  E-value=1.4e-08  Score=85.37  Aligned_cols=59  Identities=31%  Similarity=0.651  Sum_probs=52.9

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEe-cCCCEEEEEeC-CeeeEecCCchhcccC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRR-VDNNWFEGRIG-TRRGIFPVTYVEQQSR   76 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~-~~~~w~~~~~~-g~~G~~P~~~v~~~~~   76 (191)
                      ....++|+|||.++..+||+|.+|+++.+++. .+++||.++.. |+.|+||++||++...
T Consensus        10 ~~~~~~aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~~g~~G~~P~~yv~~~~~   70 (450)
T 1k9a_A           10 SGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG   70 (450)
T ss_dssp             TTCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCC
T ss_pred             CCCEEEECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEECCCceeeechhccccccc
Confidence            44579999999999999999999999999998 56799999985 9999999999998644

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=98.75  E-value=2e-08  Score=84.46  Aligned_cols=58  Identities=24%  Similarity=0.514  Sum_probs=52.1

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEE-CCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~-~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ..++|+|||.++..+||+|++||++.+++. .+++||.++.. +|+.|+||.+||++...
T Consensus        12 ~~~~aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~-~g~~G~~P~~yv~~~~~   70 (450)
T 1k9a_A           12 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNK-VGREGIIPANYVQKREG   70 (450)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECT-TCCEEEEEGGGEEECCC
T ss_pred             CEEEECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEEC-CCceeeechhccccccc
Confidence            359999999999999999999999999998 57799999985 69999999999998543

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.73  E-value=7.6e-09  Score=68.69  Aligned_cols=56  Identities=18%  Similarity=0.284  Sum_probs=47.1

Q ss_pred             EEEeeec--cCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         99 YHALYNY--KPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        99 ~~~~~d~--~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      +.++++|  ......+|.|++|+++.|+...+.+||.+++. .|+.|+||.+||..++.
T Consensus        42 ~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~~wwLcRNs-~GkyGyVP~~yl~~~d~   99 (102)
T 1ri9_A           42 TKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNE-EGKYGYVLRSYLADNDG   99 (102)
T ss_dssp             CBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEEET-TTEEEEEEGGGSCC---
T ss_pred             EEEeeccccccCCcccCCcCCCCEEEEEEeCCCCEEEEECC-CCCCCceeHHHhccccc
Confidence            5666677  45667899999999999999999999999997 89999999999997753

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=98.68  E-value=2.4e-08  Score=85.61  Aligned_cols=57  Identities=16%  Similarity=0.251  Sum_probs=52.5

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhcccC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   76 (191)
                      ..++|+|+|.++..+||+|++||+|.|+...+++||.|+.  +|+.|+||++||+.+..
T Consensus       443 ~~~~aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~~~  501 (526)
T 2de0_X          443 HNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIE  501 (526)
T ss_dssp             CEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEECCC
T ss_pred             cceEEeecCCCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEccc
Confidence            4689999999999999999999999999998899999994  89999999999988643

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.13  E-value=2.2e-09  Score=86.29  Aligned_cols=60  Identities=23%  Similarity=0.568  Sum_probs=54.4

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++++|+|.++..++|+|++||+|.|+++.+++||.+++. +|+.||||.+||+.+....
T Consensus       126 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~~~~~-~g~~G~~P~~yv~~~~~~~  185 (303)
T 2lqn_A          126 EYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNK-DGRVGMIPVPYVEKLVRSS  185 (303)
Confidence            35899999999999999999999999999988999999965 7899999999999987654

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=98.67  E-value=1.7e-08  Score=85.04  Aligned_cols=55  Identities=22%  Similarity=0.509  Sum_probs=51.6

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhccc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   75 (191)
                      .++|+|+|.++..+||+|.+||++.|++..+++||.++.  +|+.|+||++|++...
T Consensus         4 ~~~al~~~~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~   60 (452)
T 1fmk_A            4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD   60 (452)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             EEEECCccCCCCCCCCCccCCCEEEEeccCCCCceEEEEcCCCcccccCcccccccc
Confidence            589999999999999999999999999988899999999  7999999999998753

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.67  E-value=3.7e-08  Score=82.91  Aligned_cols=56  Identities=29%  Similarity=0.596  Sum_probs=50.7

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      .++|+|||.++..++|+|++||++.+++.. ++||.++...+|+.|+||.+||..+.
T Consensus        10 ~~~al~~~~~~~~~el~~~~gd~~~v~~~~-~~W~~~~~~~~g~~G~~P~~yv~~~~   65 (454)
T 1qcf_A           10 IVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVD   65 (454)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECC-TTEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             EEEECcccCCcCCCcCcccCCCEEEEEecC-CCCeEEEECCCCceEEecchhccccc
Confidence            589999999999999999999999999884 78999996448999999999999865

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=98.66  E-value=2.9e-08  Score=60.77  Aligned_cols=42  Identities=17%  Similarity=0.532  Sum_probs=38.4

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI   59 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~   59 (191)
                      ....++|+|+|.++..++|+|.+|+++.|+...+++||.++.
T Consensus        20 ~~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~   61 (62)
T 1g2b_A           20 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV   61 (62)
T ss_dssp             SSCEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred             CceEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEe
Confidence            345799999999999999999999999999998899999875

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.62  E-value=3.1e-08  Score=65.75  Aligned_cols=56  Identities=14%  Similarity=0.194  Sum_probs=46.3

Q ss_pred             eEEEeecC--CCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcccC
Q psy15854         21 QARAKFNF--VAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        21 ~~~a~~~~--~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   76 (191)
                      .+.++++|  ......+|+|.+|+.+.|++..+.+||.|++ .|+.|+||.+|+..+..
T Consensus        41 ~~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~~wwLcRNs~GkyGyVP~~yl~~~d~   99 (102)
T 1ri9_A           41 STKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYLADNDG   99 (102)
T ss_dssp             CCBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGSCC---
T ss_pred             EEEEeeccccccCCcccCCcCCCCEEEEEEeCCCCEEEEECCCCCCCceeHHHhccccc
Confidence            34556666  5567899999999999999999999999999 79999999999987653

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.61  E-value=6.5e-08  Score=82.38  Aligned_cols=55  Identities=24%  Similarity=0.510  Sum_probs=50.3

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      .++|+|||.++..++|+|++||++.|++.. +++||.++.  .|+.|+||.+||+.+.
T Consensus        45 ~~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~--~~~~G~~P~~yv~~~~  100 (495)
T 1opk_A           45 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT--KNGQGWVPSNYITPVN  100 (495)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEEC--SSCEEEEEGGGEEESS
T ss_pred             EEEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeee--cCCcceeccccccccc
Confidence            589999999999999999999999999987 778999998  6888999999999764

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.61  E-value=5.4e-08  Score=82.90  Aligned_cols=56  Identities=25%  Similarity=0.457  Sum_probs=51.6

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEec-CCCEEEEEeCCeeeEecCCchhccc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEGRIGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   75 (191)
                      ..++|+|||.+...++|+|++|+.+.+++.. +++||.++..|+.|+||.+||+.+.
T Consensus        44 ~~~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~~~~G~~P~~yv~~~~  100 (495)
T 1opk_A           44 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVN  100 (495)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEESS
T ss_pred             cEEEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeeecCCcceeccccccccc
Confidence            4689999999999999999999999999986 6899999999999999999998764

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.54  E-value=1.1e-07  Score=80.04  Aligned_cols=56  Identities=23%  Similarity=0.515  Sum_probs=50.4

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEE--eCCeeeEecCCchhccc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR--IGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~   75 (191)
                      ...++|+|+|.++..++|+|.+|+.+.+++. .++||.++  .+|+.|+||++||+...
T Consensus         8 ~~~~~al~~~~~~~~~el~~~~gd~~~v~~~-~~~W~~~~~~~~g~~G~~P~~yv~~~~   65 (454)
T 1qcf_A            8 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVD   65 (454)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             CeEEEECcccCCcCCCcCcccCCCEEEEEec-CCCCeEEEECCCCceEEecchhccccc
Confidence            3469999999999999999999999999998 47899999  47899999999998754

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=98.50  E-value=1.3e-08  Score=86.81  Aligned_cols=57  Identities=39%  Similarity=0.745  Sum_probs=0.0

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      +..++|+|||.++..++|+|.+||+|.|+... +.|||.|+.. .|..|+||.+||+.+
T Consensus       428 ~~~~~alydy~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~-~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          428 EVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLD-NGQVGLYPANYVEAI  485 (486)
T ss_dssp             -----------------------------------------------------------
T ss_pred             CeEEEEccccCCCCCCcCccCCCCEEEEEEecCCCCeeEEEeC-CCCEEEEeHHHceeC
Confidence            34689999999999999999999999998877 4589999984 589999999999876

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.47  E-value=4.8e-08  Score=78.11  Aligned_cols=54  Identities=22%  Similarity=0.402  Sum_probs=47.9

Q ss_pred             eEEEeecCCCCCCC-----CccccCCCEEEEEEecCCCEEEEEeCC------eeeEecCCchhcc
Q psy15854         21 QARAKFNFVAQTHL-----ELSLVKGELVTLIRRVDNNWFEGRIGT------RRGIFPVTYVEQQ   74 (191)
Q Consensus        21 ~~~a~~~~~~~~~~-----els~~~g~~i~v~~~~~~~w~~~~~~g------~~G~~P~~~v~~~   74 (191)
                      .++|+|||+++..+     +|+|.+|+++.|++..+.+||.++..+      +.|+||++|+.+.
T Consensus         3 ~vrAlydy~~~~~~~~p~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e~   67 (295)
T 1kjw_A            3 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (295)
T ss_dssp             EEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEEeeccCCCCCCCCCCcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHHH
Confidence            47899999998877     999999999999999889999998842      7899999999764

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.46  E-value=4.6e-08  Score=78.27  Aligned_cols=57  Identities=23%  Similarity=0.443  Sum_probs=48.8

Q ss_pred             cEEEeeeccCCCCC-----CccCCCCCEEEEeEECCCCEEEEEeCCC----CcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDD-----ELELREGETVFVMEKCDDGWYVGSSQRS----GCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~-----eLs~~~ge~v~v~~~~~~gw~~~~~~~~----g~~G~vP~~~v~~i~  154 (191)
                      .++|+|||.++..+     +|+|++||++.|++..+++||.++....    ++.|+||.+|+....
T Consensus         3 ~vrAlydy~~~~~~~~p~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e~~   68 (295)
T 1kjw_A            3 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERR   68 (295)
T ss_dssp             EEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHHH
T ss_pred             EEEEeeccCCCCCCCCCCcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHHHH
Confidence            48899999987766     9999999999999998899999998532    378999999997643

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=98.43  E-value=2.5e-08  Score=85.00  Aligned_cols=55  Identities=33%  Similarity=0.645  Sum_probs=0.0

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEEeC-CeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIG-TRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~~~-g~~G~~P~~~v~~~   74 (191)
                      ..++|+|+|.+...++|+|.+|++|.|+...+ .+||.|+.. |+.|+||.+||+.+
T Consensus       429 ~~~~alydy~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          429 VRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAI  485 (486)
T ss_dssp             ---------------------------------------------------------
T ss_pred             eEEEEccccCCCCCCcCccCCCCEEEEEEecCCCCeeEEEeCCCCEEEEeHHHceeC
Confidence            35899999999999999999999999998764 599999986 99999999999875

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.40  E-value=2e-07  Score=82.03  Aligned_cols=58  Identities=21%  Similarity=0.338  Sum_probs=49.5

Q ss_pred             ccEEEeeecc---CCCCCCccCCCCCEEEEeEE-----CCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNYK---PQNDDELELREGETVFVMEK-----CDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~---~~~~~eLs~~~ge~v~v~~~-----~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ..++|++||.   +.....|+|++||+|.+...     .+.|||.|++.++|+.|+||++||..+.
T Consensus       574 ~~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~lp  639 (655)
T 3pvl_A          574 KYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVMP  639 (655)
T ss_dssp             CEEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             hhhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEECC
Confidence            4699999998   67888999999999999887     4679999998779999999999999874

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.39  E-value=9.1e-07  Score=57.40  Aligned_cols=60  Identities=27%  Similarity=0.421  Sum_probs=49.7

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecC----CCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD----NNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~----~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      +...+.+..++.+...-+|.+.+|+++.|+++.+    ..||.++.+|..||||++|++++...
T Consensus        16 ~~~LY~~t~~~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdtgg~~GyvPs~yLe~~~~~   79 (92)
T 1ug1_A           16 PEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPR   79 (92)
T ss_dssp             GGGEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCC
T ss_pred             chheEEeccCcCCCCceeeeecCCCEEEEEecCCCCCCCcceEEECCCcEEeeEhhhceEcccC
Confidence            3446788888888889999999999999999864    35666777999999999999998653

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.36  E-value=1.9e-07  Score=61.46  Aligned_cols=53  Identities=23%  Similarity=0.433  Sum_probs=45.9

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECC--CCEEEEEeCCCCcEEEEcCCCeee
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCD--DGWYVGSSQRSGCFGTFPGNYVER  152 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~--~gw~~~~~~~~g~~G~vP~~~v~~  152 (191)
                      .++++++. .....+|.|..|+++.|+....  .|||.+++. .|..|+||.+||+.
T Consensus        30 ~a~a~~~~-k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~-~G~~GyVp~~~v~v   84 (96)
T 2gtj_A           30 LAKACCDV-KGGKNELSFKQGEQIEIIRITDNPEGKWLGRTA-RGSYGYIKTTAVEI   84 (96)
T ss_dssp             EEEESSCE-ECTTSCCEECTTCCEEEEECTTCSSSCCEEECT-TCCBCCCCGGGEEE
T ss_pred             EEEEeecC-CCCcccCCcCCCCEEEEEEccCCCCCeEEEECC-CCCCCccchhhEEE
Confidence            46778874 5577899999999999999875  679999997 89999999999876

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.31  E-value=2e-06  Score=55.85  Aligned_cols=57  Identities=19%  Similarity=0.254  Sum_probs=45.6

Q ss_pred             EEEeeeccCCCCCCccCCCCCEEEEeEECC----CCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         99 YHALYNYKPQNDDELELREGETVFVMEKCD----DGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~----~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      +.+..++.+....+|.+.+||+|-|+++.+    .+||+...  .|..||||++|++.+....
T Consensus        20 Y~~t~~~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdt--gg~~GyvPs~yLe~~~~~~   80 (92)
T 1ug1_A           20 FQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDN--GVTKGFVYSSFLKPYNPRR   80 (92)
T ss_dssp             EEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEEC--SSSEEEEEGGGEEECCCCS
T ss_pred             EEeccCcCCCCceeeeecCCCEEEEEecCCCCCCCcceEEEC--CCcEEeeEhhhceEcccCC
Confidence            555566666677799999999999999874    35666665  7899999999999997644

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.29  E-value=9.6e-07  Score=71.29  Aligned_cols=53  Identities=19%  Similarity=0.468  Sum_probs=46.5

Q ss_pred             CcceEEEeecCCCCCCCC-------ccccCCCEEEEEEecCCCEEEEEe---CCeeeEecCCc
Q psy15854         18 SEGQARAKFNFVAQTHLE-------LSLVKGELVTLIRRVDNNWFEGRI---GTRRGIFPVTY   70 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~e-------ls~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~   70 (191)
                      ....++|+|||++..+++       |+|.+|+++.|+...+++||.++.   +|..|+||+++
T Consensus        37 ~~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           37 VAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             CCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             ccEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            344789999999987664       999999999999999999999998   46889999976

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.20  E-value=7e-07  Score=58.73  Aligned_cols=55  Identities=31%  Similarity=0.332  Sum_probs=46.8

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecC--CCEEEEEe-CCeeeEecCCchhccc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRI-GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~--~~w~~~~~-~g~~G~~P~~~v~~~~   75 (191)
                      ..+.|+++ ...+..+|+|.+|+.+.++...+  ++||.+++ .|+.|+||.+|++.-.
T Consensus        29 ~~a~a~~~-~k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~~G~~GyVp~~~v~vd~   86 (96)
T 2gtj_A           29 HLAKACCD-VKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEIDY   86 (96)
T ss_dssp             EEEEESSC-EECTTSCCEECTTCCEEEEECTTCSSSCCEEECTTCCBCCCCGGGEEECS
T ss_pred             EEEEEeec-CCCCcccCCcCCCCEEEEEEccCCCCCeEEEECCCCCCCccchhhEEEEh
Confidence            35778887 45688899999999999999876  57999999 7999999999987643

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.15  E-value=1.2e-06  Score=77.11  Aligned_cols=58  Identities=24%  Similarity=0.298  Sum_probs=48.6

Q ss_pred             ceEEEeecCC---CCCCCCccccCCCEEEEEEe-----cCCCEEEEEe--CCeeeEecCCchhcccCC
Q psy15854         20 GQARAKFNFV---AQTHLELSLVKGELVTLIRR-----VDNNWFEGRI--GTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        20 ~~~~a~~~~~---~~~~~els~~~g~~i~v~~~-----~~~~w~~~~~--~g~~G~~P~~~v~~~~~~   77 (191)
                      ..++|++||.   ++....|+|++||+|.+...     .+++||.|++  +|+.|+||++||..+...
T Consensus       574 ~~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~lptl  641 (655)
T 3pvl_A          574 KYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVMPTV  641 (655)
T ss_dssp             CEEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEECCCS
T ss_pred             hhhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEECCCC
Confidence            3689999999   77889999999999998887     3579999995  799999999999998653

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.12  E-value=2.7e-06  Score=68.71  Aligned_cols=54  Identities=17%  Similarity=0.420  Sum_probs=46.1

Q ss_pred             CccEEEeeeccCCCCC-------CccCCCCCEEEEeEECCCCEEEEEeCC-CCcEEEEcCCC
Q psy15854         96 PVPYHALYNYKPQNDD-------ELELREGETVFVMEKCDDGWYVGSSQR-SGCFGTFPGNY  149 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~-------eLs~~~ge~v~v~~~~~~gw~~~~~~~-~g~~G~vP~~~  149 (191)
                      ...++|+|||.+...+       +|+|++||++.|++..+.+||.++... .|..|+||+++
T Consensus        38 ~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           38 AFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             cEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            3468999999998655       499999999999999999999999842 46789999987

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.05  E-value=5.3e-06  Score=63.50  Aligned_cols=57  Identities=25%  Similarity=0.494  Sum_probs=50.2

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCC---EEEEEeCCeeeEecCCchhcccCC
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNN---WFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~---w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...++++|.+....++.+..|+.+.++.+.+.+   ||.+...|+.|+||.+|++.+...
T Consensus       172 ~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~~~  231 (239)
T 1ycs_B          172 VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRI  231 (239)
T ss_dssp             EEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC--
T ss_pred             eEEEEeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEEECCcEEEeehHHeeECCcC
Confidence            578899999999999999999999999886655   999999999999999999987543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.05  E-value=6.3e-06  Score=63.06  Aligned_cols=56  Identities=30%  Similarity=0.574  Sum_probs=49.1

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCC---EEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDG---WYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~g---w~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ...++++|.++...++.+..|+++.++.+.+.+   ||.++.  .++.|+||.+||+.+..
T Consensus       172 ~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~--~~~~G~~P~~yv~~~~~  230 (239)
T 1ycs_B          172 VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARL--NDKEGYVPRNLLGLYPR  230 (239)
T ss_dssp             EEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEE--TTEEEEEEGGGEECCC-
T ss_pred             eEEEEeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEEE--CCcEEEeehHHeeECCc
Confidence            468899999999999999999999999887654   999998  78999999999998743

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=97.87  E-value=1.5e-05  Score=63.78  Aligned_cols=53  Identities=15%  Similarity=0.293  Sum_probs=43.2

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCC---------EEEEEeC------CeeeEecCCchhc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNN---------WFEGRIG------TRRGIFPVTYVEQ   73 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~---------w~~~~~~------g~~G~~P~~~v~~   73 (191)
                      +++|+|+|.++..++|+|.+||++.|+.....+         ||.+..-      +..|++|.+|+.+
T Consensus         6 yVRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~ae   73 (308)
T 3kfv_A            6 YIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAE   73 (308)
T ss_dssp             EEEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHH
T ss_pred             EEEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHH
Confidence            567999999999999999999999999986555         9999762      2679999988765

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.85  E-value=1.7e-05  Score=65.75  Aligned_cols=54  Identities=22%  Similarity=0.287  Sum_probs=46.9

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEe---cCCCEEEEEeCC------eeeEecCCchhcc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRR---VDNNWFEGRIGT------RRGIFPVTYVEQQ   74 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~---~~~~w~~~~~~g------~~G~~P~~~v~~~   74 (191)
                      .++|+|+|.+....+|+|.+|+++.|+..   .+.+||.++..+      ..|++|.+|+.+-
T Consensus       108 ~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e~  170 (391)
T 3tsz_A          108 YIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQ  170 (391)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHHH
T ss_pred             ccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHHH
Confidence            57799999999999999999999999998   567899998722      4799999998763

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=97.83  E-value=3.8e-05  Score=60.88  Aligned_cols=53  Identities=11%  Similarity=0.106  Sum_probs=44.4

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhccc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~   75 (191)
                      ..+.+++||.+.   ++++.+|+.+.++...+..||.++. +|.+|++|++|+.+..
T Consensus       199 ~~v~al~dy~~~---e~~~~kge~~~l~~~s~~~wW~v~~~~G~~g~vPs~~~~ip~  252 (283)
T 3pe0_A          199 LPLLAVCDYKQV---EVTVHKGDECQLVGPAQPSHWKVLSSSGSEAAVPSVCFLVPP  252 (283)
T ss_dssp             EEEEECSCEECS---SCEECTTCEEEEEEECSTTEEEEECC---EEEEEGGGEECCS
T ss_pred             ceEEeecCccCC---cccccCCCEEEEeeCCCCCceEEEcCCCCEeeccceEEeeCC
Confidence            368999999774   7999999999999998889999987 6889999999997753

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.78  E-value=1.8e-05  Score=65.55  Aligned_cols=58  Identities=14%  Similarity=0.217  Sum_probs=48.2

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEE---CCCCEEEEEeCCCC----cEEEEcCCCeeec
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEK---CDDGWYVGSSQRSG----CFGTFPGNYVERA  153 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~---~~~gw~~~~~~~~g----~~G~vP~~~v~~i  153 (191)
                      ...++++|||.+....+|+|.+||++.|+..   .+.+||.++....+    ..|+||.+|+..-
T Consensus       106 ~~~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e~  170 (391)
T 3tsz_A          106 SFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQ  170 (391)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHHH
T ss_pred             ccccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHHH
Confidence            4567899999999889999999999999998   46789999874222    4899999988653

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.78  E-value=2.5e-05  Score=69.60  Aligned_cols=54  Identities=22%  Similarity=0.399  Sum_probs=47.4

Q ss_pred             eEEEeecCCCCCCCC-----ccccCCCEEEEEEecCCCEEEEEeC------CeeeEecCCchhcc
Q psy15854         21 QARAKFNFVAQTHLE-----LSLVKGELVTLIRRVDNNWFEGRIG------TRRGIFPVTYVEQQ   74 (191)
Q Consensus        21 ~~~a~~~~~~~~~~e-----ls~~~g~~i~v~~~~~~~w~~~~~~------g~~G~~P~~~v~~~   74 (191)
                      .++|+|+|++..+++     |+|++|+++.|+...+.+||.++..      +..|+||.+|+.+-
T Consensus       429 ~vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e~  493 (721)
T 2xkx_A          429 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER  493 (721)
T ss_pred             eEEEeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHHHH
Confidence            578999999998888     9999999999999988999999873      34699999998654

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=97.77  E-value=1.7e-05  Score=63.56  Aligned_cols=56  Identities=14%  Similarity=0.304  Sum_probs=44.4

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCC---------EEEEEeC-CC---CcEEEEcCCCeee
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDG---------WYVGSSQ-RS---GCFGTFPGNYVER  152 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~g---------w~~~~~~-~~---g~~G~vP~~~v~~  152 (191)
                      ..++++|||.++...+|+|.+||++.|++..++|         ||.++.. ..   +..|+||.+|+..
T Consensus         5 fyVRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~ae   73 (308)
T 3kfv_A            5 FYIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAE   73 (308)
T ss_dssp             EEEEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHH
T ss_pred             EEEEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHH
Confidence            4578999999999999999999999999987655         9999873 12   3689999998765

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=97.77  E-value=3.8e-05  Score=60.88  Aligned_cols=58  Identities=17%  Similarity=0.245  Sum_probs=47.8

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      +..+.++|||...   ++++.+|+.+.+++..+..||.++.. +|.+|+||++|+.+..+..
T Consensus       198 ~~~v~al~dy~~~---e~~~~kge~~~l~~~s~~~wW~v~~~-~G~~g~vPs~~~~ip~p~~  255 (283)
T 3pe0_A          198 RLPLLAVCDYKQV---EVTVHKGDECQLVGPAQPSHWKVLSS-SGSEAAVPSVCFLVPPPNQ  255 (283)
T ss_dssp             CEEEEECSCEECS---SCEECTTCEEEEEEECSTTEEEEECC----EEEEEGGGEECCSCCH
T ss_pred             CceEEeecCccCC---cccccCCCEEEEeeCCCCCceEEEcC-CCCEeeccceEEeeCCCCH
Confidence            4569999999874   79999999999999988889999986 7889999999998876543

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.75  E-value=2.7e-05  Score=69.36  Aligned_cols=58  Identities=22%  Similarity=0.423  Sum_probs=48.7

Q ss_pred             CccEEEeeeccCCCCCC-----ccCCCCCEEEEeEECCCCEEEEEeCCC----CcEEEEcCCCeeec
Q psy15854         96 PVPYHALYNYKPQNDDE-----LELREGETVFVMEKCDDGWYVGSSQRS----GCFGTFPGNYVERA  153 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~e-----Ls~~~ge~v~v~~~~~~gw~~~~~~~~----g~~G~vP~~~v~~i  153 (191)
                      ...++++|||.+....+     |+|++||++.|+...+.+||.++....    +..|+||.+|+...
T Consensus       427 ~~~vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e~  493 (721)
T 2xkx_A          427 GFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER  493 (721)
T ss_pred             ceeEEEeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHHHH
Confidence            34678999999988777     999999999999998899999987422    34699999998654

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.69  E-value=5.8e-05  Score=63.80  Aligned_cols=53  Identities=21%  Similarity=0.311  Sum_probs=46.7

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEe---cCCCEEEEEe---CC---eeeEecCCchhc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRR---VDNNWFEGRI---GT---RRGIFPVTYVEQ   73 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~---~~~~w~~~~~---~g---~~G~~P~~~v~~   73 (191)
                      .++++|+|.+....+|+|.+|+++.|+..   .+.+||.++.   .+   +.|+||.+|+.+
T Consensus       100 yVralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e  161 (468)
T 3shw_A          100 YIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  161 (468)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHH
T ss_pred             ccccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHH
Confidence            57899999999999999999999999998   5678999977   23   689999999876

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.69  E-value=4.1e-05  Score=64.70  Aligned_cols=58  Identities=14%  Similarity=0.207  Sum_probs=48.3

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEE---CCCCEEEEEeCCC-C---cEEEEcCCCeeec
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEK---CDDGWYVGSSQRS-G---CFGTFPGNYVERA  153 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~---~~~gw~~~~~~~~-g---~~G~vP~~~v~~i  153 (191)
                      ...++++|+|.+....+|+|++||++.|+..   .+.+||.++.... +   ..|+||.+|+..-
T Consensus        98 s~yVralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e~  162 (468)
T 3shw_A           98 SFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQ  162 (468)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHHH
T ss_pred             ccccccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHHH
Confidence            4467899999999999999999999999998   4678999987322 3   5899999998653

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=97.67  E-value=6.4e-05  Score=56.46  Aligned_cols=56  Identities=30%  Similarity=0.574  Sum_probs=51.3

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      ...++++++|.++...++.|.+|+++.+....+.+||.+...|+.|++|.+|+...
T Consensus        14 ~~~~~al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~   69 (222)
T 3ehr_A           14 VKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ   69 (222)
T ss_dssp             CEEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHH
T ss_pred             ceEEEEeCCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhcccc
Confidence            34689999999999999999999999999998899999999999999999888765

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.43  E-value=0.00011  Score=58.46  Aligned_cols=52  Identities=21%  Similarity=0.440  Sum_probs=38.2

Q ss_pred             eEEEeecCCCCCCC-----CccccCCCEEEEEEecCCCEEEEEe---C---CeeeEecCCchh
Q psy15854         21 QARAKFNFVAQTHL-----ELSLVKGELVTLIRRVDNNWFEGRI---G---TRRGIFPVTYVE   72 (191)
Q Consensus        21 ~~~a~~~~~~~~~~-----els~~~g~~i~v~~~~~~~w~~~~~---~---g~~G~~P~~~v~   72 (191)
                      +++|+|||++..++     .|+|.+||++.|+...+.+||.++.   +   +..|++|+....
T Consensus         7 yvRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~~~   69 (292)
T 3tvt_A            7 YVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRRW   69 (292)
T ss_dssp             EEEECSCBCC---------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECHHHH
T ss_pred             EEEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeChHHH
Confidence            78999999998665     5899999999999999999999975   1   247999985444

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.43  E-value=0.00016  Score=57.51  Aligned_cols=55  Identities=25%  Similarity=0.570  Sum_probs=38.9

Q ss_pred             CccEEEeeeccCCCCC-----CccCCCCCEEEEeEECCCCEEEEEeC----CCCcEEEEcCCCe
Q psy15854         96 PVPYHALYNYKPQNDD-----ELELREGETVFVMEKCDDGWYVGSSQ----RSGCFGTFPGNYV  150 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~-----eLs~~~ge~v~v~~~~~~gw~~~~~~----~~g~~G~vP~~~v  150 (191)
                      ..+++|++||.+....     .|+|++||++.|++..+.+||.++.-    .....|++|+...
T Consensus         5 s~yvRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~~   68 (292)
T 3tvt_A            5 SLYVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRR   68 (292)
T ss_dssp             CCEEEECSCBCC---------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECHHH
T ss_pred             eEEEEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeChHH
Confidence            3568999999987544     59999999999999999999999862    1234799998543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=97.25  E-value=0.00032  Score=52.55  Aligned_cols=55  Identities=35%  Similarity=0.823  Sum_probs=49.7

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      .+.++|+|.++...++.++.|+++.+....+.+||.+..  .|..|++|.+|+....
T Consensus        16 ~~~al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~--~g~~gl~p~~~v~~~~   70 (222)
T 3ehr_A           16 VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTS--KGRTGLIPSNYVAEQA   70 (222)
T ss_dssp             EEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEE--TTEEEEEEHHHHHHHE
T ss_pred             EEEEeCCcCCCCCCcccccCCCEEEEeccccchhHhccc--CCcceeechhhccccc
Confidence            479999999999999999999999999988899999998  6899999999887553

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=97.22  E-value=0.00051  Score=57.81  Aligned_cols=53  Identities=13%  Similarity=0.004  Sum_probs=46.9

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhccc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~   75 (191)
                      ..+.+++||..   .++++.+|+.+.++...+..||.+.. +|..|+||+.|+.+..
T Consensus       284 ~~V~alcdy~~---~e~~i~kge~~~L~~ns~~~~W~V~~~~G~~~~vPavcf~ipp  337 (450)
T 3r6n_A          284 IILRALCDYKQ---DQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIPP  337 (450)
T ss_dssp             CEEEESSCEEE---TTEEECTTCEEEEEECSSSSEEEEECSSSCCEEEEGGGEECCS
T ss_pred             ceEEEeccccC---CeeeEecCCEEEEecCCCCCceEEecCCCCeeccceeEEecCC
Confidence            36899999994   78899999999999999999999988 5799999999997753

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=97.11  E-value=0.00059  Score=57.42  Aligned_cols=57  Identities=16%  Similarity=0.237  Sum_probs=49.9

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      +..+.+++||..   .++++.+|+.+.++...+..||.++.. +|..|+||+.|+.+-.+.
T Consensus       283 ~~~V~alcdy~~---~e~~i~kge~~~L~~ns~~~~W~V~~~-~G~~~~vPavcf~ipppd  339 (450)
T 3r6n_A          283 PIILRALCDYKQ---DQKIVHKGDECILKDNNERSKWYVTGP-GGVDMLVPSVGLIIPPPN  339 (450)
T ss_dssp             CCEEEESSCEEE---TTEEECTTCEEEEEECSSSSEEEEECS-SSCCEEEEGGGEECCSCC
T ss_pred             CceEEEeccccC---CeeeEecCCEEEEecCCCCCceEEecC-CCCeeccceeEEecCCCC
Confidence            456899999995   688999999999999999999999986 789999999999876543

>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A

Probab=95.74  E-value=0.063  Score=42.60  Aligned_cols=111  Identities=11%  Similarity=0.117  Sum_probs=68.2

Q ss_pred             ccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcccCCCCCCCCCCccccccCCCCCccEEEeeec-cCCCCCCc
Q psy15854         36 LSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNY-KPQNDDEL  113 (191)
Q Consensus        36 ls~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~eL  113 (191)
                      -.+..|+.+.|++. + +|++.+. +|..||++..++...................     ......++.- ......-.
T Consensus        35 ~~l~~G~~v~Vl~~-~-gW~~V~~~dG~~GwV~~~~l~~~~~~~~~~~~~~~~~vv-----t~~~~~vr~~p~~~~~~~~  107 (306)
T 3npf_A           35 TQALLGMPVKVLQY-N-GWYEIQTPDDYTGWVHRMVITPMSKERYDEWNRAEKIVV-----TSHYGFAYEKPDESSQPVS  107 (306)
T ss_dssp             EEEETTCEEEEEEE-S-SEEEEECTTSCEEEEEGGGEEEECHHHHHHHHHSCEEEE-----CSSEEEEESSSSTTSCEEE
T ss_pred             EEEcCCCEEEEEEE-C-CEEEEEcCCCCEEEEEhHHeeecChhhhhhhccCCcEEE-----eecceeEEeCCCCCCceEE
Confidence            46778999999997 3 5999998 7999999999987653210000000000000     0001112211 11112235


Q ss_pred             cCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854        114 ELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus       114 s~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .+..|..+.+++.. ++|+..+.. +|..||++..++..+..
T Consensus       108 ~l~~Gt~v~v~~~~-~~W~kV~~p-dG~~GyV~~~~l~~~~~  147 (306)
T 3npf_A          108 DVVAGNRLKWEGSK-GHFYQVSYP-DGRKAYLSKSISQPEAG  147 (306)
T ss_dssp             EEETTCEEEEEEEE-TTEEEEECT-TSCEEEEETTSEEEHHH
T ss_pred             EEcCCCEEEEEeec-CCEEEEEcC-CCCeEEEEeeccceeec
Confidence            67889999887654 579988875 78899999999987653

>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1

Probab=94.74  E-value=0.18  Score=30.76  Aligned_cols=55  Identities=18%  Similarity=0.273  Sum_probs=44.3

Q ss_pred             EEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCC----cEEEEcCCCeeec
Q psy15854         99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSG----CFGTFPGNYVERA  153 (191)
Q Consensus        99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g----~~G~vP~~~v~~i  153 (191)
                      +.+..||.+...++++...|+++.++..+.-.++..-..++.    .+||+|-..+-..
T Consensus        10 m~V~~dY~A~ke~eI~v~~ge~Vqila~nqqnm~Lv~~~a~~q~paaegWvPG~vLg~~   68 (74)
T 1wfw_A           10 MTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPF   68 (74)
T ss_dssp             EECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBC
T ss_pred             EEEEeeeeeeccceeccccCcEEEEEEecCcceEEEEeecCCCCccccCcccccEeccc
Confidence            677889999999999999999999999998888777553233    5799998765443

>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}

Probab=94.62  E-value=0.45  Score=37.82  Aligned_cols=108  Identities=13%  Similarity=0.131  Sum_probs=66.0

Q ss_pred             cccCCCEEEEEEecCCCEEEEEe---------CCeeeEecCCchhcccCCCCCCCCCCccccccCCCCCccEEEeeeccC
Q psy15854         37 SLVKGELVTLIRRVDNNWFEGRI---------GTRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKP  107 (191)
Q Consensus        37 s~~~g~~i~v~~~~~~~w~~~~~---------~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  107 (191)
                      .+..|+.+.|+++ .++|.+++.         +|..||++..++...... + ...........     .....++.-..
T Consensus        63 qll~Ge~V~Vl~~-~~~W~~V~~~~q~~~~~~dGy~GWV~~~~L~~~~~~-~-~~~~~~~~~Vt-----~~~~~l~~~p~  134 (311)
T 3h41_A           63 QALLGQEVTVVDK-KGDWVKVLVHGQPTPRNEEGYPGWMPEKQLTYNQEF-A-DKTNEPFVLVT-----KPTAILYINPS  134 (311)
T ss_dssp             EEETTCEEEEEEE-ETTEEEEEETTCCBTTBSSCEEEEEEGGGEECCHHH-H-HTTTSCEEEEC-----SSEEEEEESSC
T ss_pred             eecCCCEEEEEEe-eCCEEEEEECCcccccCCCCcEEEEEHHHcCccccc-c-ccccCCeEEEE-----eCceEEeccCC
Confidence            4556999999997 478999985         788999998887541100 0 00000000000     00112221111


Q ss_pred             CCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854        108 QNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus       108 ~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ....-..+..|.++.+++.. .+|+..... +|+.||+...++..+.
T Consensus       135 ~~~~~~~l~~Gt~Lpv~~e~-~~w~~V~~p-~G~~G~V~~~~l~~~~  179 (311)
T 3h41_A          135 EKHKSLEVSYNTRLPLLSED-TISYRVLLP-NGQKAWLRKNDGTFYR  179 (311)
T ss_dssp             TTCCEEEEETTCEEEEEEEC-SSEEEEECT-TSCEEEEEGGGEEEES
T ss_pred             CCCceEEEeCCCEEEEEeec-CCEEEEECC-CCccceeccccccccc
Confidence            11122778899999887764 579888765 7889999999888765

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=94.05  E-value=0.11  Score=32.20  Aligned_cols=39  Identities=26%  Similarity=0.484  Sum_probs=32.2

Q ss_pred             ccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854        113 LELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus       113 Ls~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      -.+..|+.+.+++.. ++|+..+.  .|..||+...|+....
T Consensus        25 ~~l~~G~~v~v~~~~-~~W~kV~~--~g~~GwV~~~yl~~~~   63 (74)
T 2krs_A           25 GTLRNNDKVEIIKEV-DGWYEIRF--NGKVGYASKSYITIVN   63 (74)
T ss_dssp             EEEETTCEEEEEEEE-TTEEEEEE--TTEEEEECSSSEEESS
T ss_pred             EEECCCCEEEEEEEe-CCEEEEEE--CCeEEEEEhHHcCCCC
Confidence            356789999998875 57999998  5899999999998754

>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A

Probab=93.83  E-value=0.11  Score=32.31  Aligned_cols=40  Identities=15%  Similarity=0.213  Sum_probs=33.1

Q ss_pred             ccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854        113 LELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus       113 Ls~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      -.+..|+.+.+++.. ++|+..+.  +|..|||...|+.....
T Consensus        27 ~~l~~G~~v~vl~~~-~~W~kV~~--~g~~GwV~~~yl~~~~~   66 (76)
T 2kt8_A           27 GSLSGNTKVTIVGEE-GAFYKIEY--KGSHGYVAKEYIKDIKD   66 (76)
T ss_dssp             EEECTTCEEEEEEEE-TTEEEEEE--TTEEEEEEGGGEEEEEC
T ss_pred             EEECCCCEEEEEEEe-CCEEEEEE--CCEEEEEEhHHhCcCCC
Confidence            356789999998874 57999998  68999999999987653

>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}

Probab=93.54  E-value=0.039  Score=33.85  Aligned_cols=41  Identities=22%  Similarity=0.345  Sum_probs=33.0

Q ss_pred             ccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854        113 LELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus       113 Ls~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      -.+..|+.+.+++.. ++|+..+.  +|..||+...|+.....+
T Consensus        26 ~~l~~G~~v~v~~~~-~~W~~V~~--~G~~GwV~~~~l~~~~~~   66 (70)
T 2kq8_A           26 GALPQGQKVQVISEN-SGWSKINY--NGQTGYIGTRYLSKLEHH   66 (70)
T ss_dssp             CCCCSSSSCCCCEEE-TTEEEEEE--TTEEEEEETTSCSCCCSC
T ss_pred             EEECCCCEEEEEEec-CCEEEEEE--CCEEEEEEhHHccchhhc
Confidence            357788888887764 57999998  799999999999877643

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=93.16  E-value=0.18  Score=31.19  Aligned_cols=38  Identities=24%  Similarity=0.533  Sum_probs=32.5

Q ss_pred             cccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhccc
Q psy15854         37 SLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        37 s~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   75 (191)
                      .+.+|+.+.++... .+|++.+..|..||+...|+....
T Consensus        26 ~l~~G~~v~v~~~~-~~W~kV~~~g~~GwV~~~yl~~~~   63 (74)
T 2krs_A           26 TLRNNDKVEIIKEV-DGWYEIRFNGKVGYASKSYITIVN   63 (74)
T ss_dssp             EEETTCEEEEEEEE-TTEEEEEETTEEEEECSSSEEESS
T ss_pred             EECCCCEEEEEEEe-CCEEEEEECCeEEEEEhHHcCCCC
Confidence            57789999998874 589999999999999999997654

>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A

Probab=92.85  E-value=0.16  Score=31.60  Aligned_cols=39  Identities=15%  Similarity=0.262  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         37 SLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        37 s~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      .+.+|+.+.++... .+|++.+.+|..||+...|+.....
T Consensus        28 ~l~~G~~v~vl~~~-~~W~kV~~~g~~GwV~~~yl~~~~~   66 (76)
T 2kt8_A           28 SLSGNTKVTIVGEE-GAFYKIEYKGSHGYVAKEYIKDIKD   66 (76)
T ss_dssp             EECTTCEEEEEEEE-TTEEEEEETTEEEEEEGGGEEEEEC
T ss_pred             EECCCCEEEEEEEe-CCEEEEEECCEEEEEEhHHhCcCCC
Confidence            57789999999874 6899999999999999999987643

>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1

Probab=91.10  E-value=1.2  Score=27.09  Aligned_cols=53  Identities=15%  Similarity=0.172  Sum_probs=42.8

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe------CCeeeEecCCchh
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI------GTRRGIFPVTYVE   72 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~------~g~~G~~P~~~v~   72 (191)
                      ..+.+..+|.+..+++++...|+++-++....-+.+....      ...+||+|-.-+-
T Consensus         8 s~m~V~~dY~A~ke~eI~v~~ge~Vqila~nqqnm~Lv~~~a~~q~paaegWvPG~vLg   66 (74)
T 1wfw_A            8 STMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILA   66 (74)
T ss_dssp             CEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCC
T ss_pred             ccEEEEeeeeeeccceeccccCcEEEEEEecCcceEEEEeecCCCCccccCcccccEec
Confidence            3578899999999999999999999999987777777644      1367999965543

>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}

Probab=90.93  E-value=0.11  Score=31.84  Aligned_cols=38  Identities=18%  Similarity=0.415  Sum_probs=31.0

Q ss_pred             cccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhccc
Q psy15854         37 SLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        37 s~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   75 (191)
                      .+.+|+.+.++.. ..+|++.+.+|..||+...|+....
T Consensus        27 ~l~~G~~v~v~~~-~~~W~~V~~~G~~GwV~~~~l~~~~   64 (70)
T 2kq8_A           27 ALPQGQKVQVISE-NSGWSKINYNGQTGYIGTRYLSKLE   64 (70)
T ss_dssp             CCCSSSSCCCCEE-ETTEEEEEETTEEEEEETTSCSCCC
T ss_pred             EECCCCEEEEEEe-cCCEEEEEECCEEEEEEhHHccchh
Confidence            4667888887776 4689999999999999999987653

>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A

Probab=80.62  E-value=1.9  Score=33.98  Aligned_cols=41  Identities=20%  Similarity=0.229  Sum_probs=33.7

Q ss_pred             ccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854        113 LELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus       113 Ls~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      -.+..|+.+.|++. + ||+..+.. +|..|||+..++..+..+
T Consensus        35 ~~l~~G~~v~Vl~~-~-gW~~V~~~-dG~~GwV~~~~l~~~~~~   75 (306)
T 3npf_A           35 TQALLGMPVKVLQY-N-GWYEIQTP-DDYTGWVHRMVITPMSKE   75 (306)
T ss_dssp             EEEETTCEEEEEEE-S-SEEEEECT-TSCEEEEEGGGEEEECHH
T ss_pred             EEEcCCCEEEEEEE-C-CEEEEEcC-CCCEEEEEhHHeeecChh
Confidence            45678999999987 3 69999875 789999999999887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	191
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-19
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	6e-16
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	8e-19
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	3e-11
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	2e-18
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	2e-12
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	4e-18
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	1e-10
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	4e-18
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	7e-13
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	3e-17
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	5e-14
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	6e-17
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	1e-14
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	9e-17
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	2e-16
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	1e-16
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	1e-11
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	1e-16
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	2e-15
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	1e-16
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	5e-14
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	2e-16
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	2e-15
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	3e-16
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	6e-14
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	3e-16
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	3e-10
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	4e-16
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	9e-14
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	4e-16
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	1e-15
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	4e-16
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	6e-13
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	5e-16
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	2e-15
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	2e-15
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	3e-12
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	2e-15
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	1e-08
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	3e-15
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	7e-11
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	4e-15
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	3e-11
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	4e-15
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	1e-12
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	5e-15
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	4e-14
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	9e-15
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	6e-14
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	1e-14
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	5e-11
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	1e-14
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	4e-07
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	1e-14
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	2e-10
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	2e-14
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	1e-10
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	2e-14
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	2e-11
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-14
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	3e-12
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	3e-14
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	2e-13
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	3e-14
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	2e-12
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	3e-14
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-12
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	4e-14
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	2e-09
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	4e-14
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	7e-12
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	6e-14
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	5e-11
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	6e-14
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	3e-13
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	1e-13
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	3e-11
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	3e-13
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	3e-08
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	4e-12
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	1e-10
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	3e-11
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	2e-06
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	1e-10
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	5e-06
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	8e-10
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	1e-07
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	7e-09
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	2e-06
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	2e-08
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	5e-07
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	2e-08
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	1e-06
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	3e-06
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	3e-05
d1vyua1	136	b.34.2.1 (A:39-174) SH3-like domain of the L-type	5e-05
d1vyua1	136	b.34.2.1 (A:39-174) SH3-like domain of the L-type	5e-05

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (191), Expect = 1e-19
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 62  RRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETV 121
           ++G FP ++V+    ++    P    +            A+Y+Y   N+DEL   +G+ +
Sbjct: 8   QKGWFPASHVKLLGPSSERATPAFHPVCQ--------VIAMYDYAANNEDELSFSKGQLI 59

Query: 122 FVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
            VM K D  W+ G  + +G  G FP NYV+
Sbjct: 60  NVMNKDDPDWWQG--EINGVTGLFPSNYVK 87

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (165), Expect = 6e-16
 Identities = 20/69 (28%), Positives = 35/69 (50%)

Query: 4  IIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR 63
          ++     R  P      Q  A +++ A    ELS  KG+L+ ++ + D +W++G I    
Sbjct: 19 LLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVT 78

Query: 64 GIFPVTYVE 72
          G+FP  YV+
Sbjct: 79 GLFPSNYVK 87

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (182), Expect = 8e-19
 Identities = 15/55 (27%), Positives = 31/55 (56%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
           + ALY+Y+ + + +L  ++GE + ++   +  W++  S  +G  G  P NYV  +
Sbjct: 5   FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS 59

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (131), Expect = 3e-11
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVE 72
           A +++ ++T  +LS  KGE + ++   + +W+     +  + G  P  YV 
Sbjct: 6  VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVA 57

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (180), Expect = 2e-18
 Identities = 19/53 (35%), Positives = 33/53 (62%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           + A+Y+Y   + DE+  ++G+ +  ++  D+GW  G+ QR+G  G  P NYVE
Sbjct: 6   FRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVE 58

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (140), Expect = 2e-12
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 18 SEGQ-ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVE 72
          + G+  RA ++++A    E+S   G+ +  ++ +D  W  G +    R G+ P  YVE
Sbjct: 1  TAGKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVE 58

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (178), Expect = 4e-18
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           + ALY+Y+   +D+L   +GE   ++   +  W+   S  +G  G  P NYV  
Sbjct: 3   FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (127), Expect = 1e-10
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVE 72
           A +++ A T  +LS  KGE   ++   + +W+E R  T    G  P  YV 
Sbjct: 4  VALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 55

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.5 bits (178), Expect = 4e-18
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 98  PY-HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           P+  A Y+Y    D+EL   E + +  +E  DD W++G  ++ G  G FP NYV 
Sbjct: 1   PWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.6 bits (142), Expect = 7e-13
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVE 72
           A A++++ A    EL+ V+ + +  I  VD++W+ G +     +G+FP  YV 
Sbjct: 2  WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 69.7 bits (171), Expect = 3e-17
 Identities = 11/52 (21%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           ALY+Y+ ++  E+ +++G+ + ++   +  W+    + +   G  P  YV++
Sbjct: 5   ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV--EVNDRQGFVPAAYVKK 54

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 61.6 bits (150), Expect = 5e-14
 Identities = 12/50 (24%), Positives = 31/50 (62%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           A +++  ++  E+++ KG+++TL+   + +W++  +  R+G  P  YV+
Sbjct: 4  LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 53

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (171), Expect = 6e-17
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           S  +   A +N+K  N+DEL + +G+ ++V    + GW+ G    +G  G FP NYV 
Sbjct: 8   SHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEG--TLNGRTGWFPSNYVR 63

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (155), Expect = 1e-14
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSG 81
           +A+FNF      ELS+ KG+++ + R  +  W+EG +  R G FP  YV +   +  SG
Sbjct: 13 VKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERSG 72

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (169), Expect = 9e-17
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           AL++Y+    ++LE +EG+ + V+ K ++ W  G S+  G  G FP  +VE ++
Sbjct: 10  ALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESK--GKVGIFPKVFVEDSA 61

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (166), Expect = 2e-16
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 16 KLSEG-QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ 74
          +L +G Q  A F++ A    +L   +G+++ ++ +V+  W EG    + GIFP  +VE  
Sbjct: 1  QLKKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDS 60

Query: 75 S 75
          +
Sbjct: 61 A 61

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (168), Expect = 1e-16
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 96  PVP---YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           P+      AL++Y+P +D +L   +GE + ++E+  + W    S  +G  G  P N+V +
Sbjct: 3   PLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWK-AQSLTTGQEGFIPFNFVAK 61

Query: 153 A 153
           A
Sbjct: 62  A 62

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (133), Expect = 1e-11
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 17 LSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWF-EGRIGTRRGIFPVTYVEQ 73
          L +    A  ++      +L   KGE + ++ +    W  +     + G  P  +V +
Sbjct: 4  LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK 61

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (167), Expect = 1e-16
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           AL+++ PQ D EL  R G+ + VM+  D  W+ G     G  G FP NYV 
Sbjct: 6   ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKG--ACHGQTGMFPRNYVT 54

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (160), Expect = 2e-15
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           +A F+F  Q   EL   +G+ + ++   D NW++G    + G+FP  YV 
Sbjct: 4  VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 54

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 1e-16
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 98  PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           PY A+  Y     DE+ L EGE V V+ K  DGW+V   ++    G FP  Y++++ 
Sbjct: 16  PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI--RKDDVTGYFPSMYLQKSG 70

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (153), Expect = 5e-14
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 21  QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE-------Q 73
              A   + A    E+SL++GE V +I ++ + W+  R     G FP  Y++       Q
Sbjct: 16  PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQ 75

Query: 74  QSRATPSGAPVDQTLHIDTHSDPVP 98
             R    GAP  ++   + HS    
Sbjct: 76  AQRQIKRGAPPRRSSIRNAHSIHQR 100

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.8 bits (166), Expect = 2e-16
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+++   +DEL  R GE V V++  +  W+ G  +     G FP NYV 
Sbjct: 6   ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTG--RLHNKLGLFPANYVA 54

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.1 bits (159), Expect = 2e-15
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          ARA ++F A    EL    GE+V ++   + +W+ GR+  + G+FP  YV 
Sbjct: 4  ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 54

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (166), Expect = 3e-16
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           AL++YK Q +DEL   +   +  +EK + GW+ G          FP NYVE 
Sbjct: 11  ALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY-GGKKQLWFPSNYVEE 61

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (150), Expect = 6e-14
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR-GIFPVTYVE 72
            +A F++ AQ   EL+ +K  ++  + + +  W+ G  G ++   FP  YVE
Sbjct: 8  AVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVE 60

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (165), Expect = 3e-16
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           ALY+Y+  + ++L  ++G+ + V+E+  + W    S  +   G  P NYV R
Sbjct: 9   ALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKAR-SLATRKEGYIPSNYVAR 59

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (125), Expect = 3e-10
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWF-EGRIGTRRGIFPVTYVE 72
           A +++ A  H +LS  KG+ + ++      W        + G  P  YV 
Sbjct: 8  VALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVA 58

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.0 bits (164), Expect = 4e-16
 Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           AL+++   ++++L  ++G+ + + +K ++ W+       G  G  P  YVE+
Sbjct: 6   ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRGMIPVPYVEK 56

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (148), Expect = 9e-14
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVE 72
           RA F+F      +L   KG+++ +  + +  W+       +RG+ PV YVE
Sbjct: 4  VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 67.0 bits (164), Expect = 4e-16
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           AL+++ PQ   EL  + G+ + ++ K D  W+ G  Q +   G FP NYV 
Sbjct: 7   ALFDFNPQESGELAFKRGDVITLINKDDPNWWEG--QLNNRRGIFPSNYVC 55

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 65.8 bits (161), Expect = 1e-15
 Identities = 23/51 (45%), Positives = 34/51 (66%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           +A F+F  Q   EL+  +G+++TLI + D NW+EG++  RRGIFP  YV 
Sbjct: 5  VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (165), Expect = 4e-16
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
           ALY+Y P N ++L+LR+G+  F++E+ +  W+     ++G  G  P NYV  A
Sbjct: 13  ALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARD-KNGQEGYIPSNYVTEA 64

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (143), Expect = 6e-13
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQ 73
          +  A ++++     +L L KG+   ++   +  W+  R    + G  P  YV +
Sbjct: 10 KVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTE 63

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.6 bits (163), Expect = 5e-16
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+++   D+EL  + GE + V++  D  W+ G  +     G FP N+V 
Sbjct: 7   ALYDFEAVEDNELTFKHGELITVLDDSDANWWQG--ENHRGTGLFPSNFVT 55

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (160), Expect = 2e-15
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           RA ++F A    EL+   GEL+T++   D NW++G      G+FP  +V 
Sbjct: 5  VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 55

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (160), Expect = 2e-15
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           A YN+    + +L   +G+ + ++    D  +  +  + G  G  P NYV++  
Sbjct: 11  AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 64

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 3e-12
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDN-NWFEGRIGT-RRGIFPVTYVEQQSRA 77
          +  AK+NF      +L   KG+++T++    + NW++ +    R GI P  YV+++   
Sbjct: 8  ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGV 66

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (160), Expect = 2e-15
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 15/73 (20%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKC---------------DDGWYVGSSQR 138
           ++   Y ALY+YK + +++++L  G+ + V +                 + GW  G ++ 
Sbjct: 1   AEGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNET 60

Query: 139 SGCFGTFPGNYVE 151
           +G  G FPG YVE
Sbjct: 61  TGERGDFPGTYVE 73

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 1e-08
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 18/81 (22%)

Query: 18 SEG-QARAKFNFVAQTHLELSLVKGELVTLIRRV---------------DNNWFEGRI-- 59
          +EG Q RA +++  +   ++ L  G+++T+ +                 +  W  G    
Sbjct: 1  AEGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNET 60

Query: 60 GTRRGIFPVTYVEQQSRATPS 80
             RG FP TYVE   R   S
Sbjct: 61 TGERGDFPGTYVEYIGRKKIS 81

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (159), Expect = 3e-15
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQ---RSGCFGTFPGNYVERAS 154
                 Y     ++L L  G+ + +++K   GW+ G  Q   +    G FP ++V+   
Sbjct: 10  AQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLG 68

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 7e-11
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 18 SEGQ-ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTR-----RGIFPVTYV 71
          S G+ A+    +VA    +LSL  G+L+ ++++  + W++G +  R     +G FP ++V
Sbjct: 5  SSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHV 64

Query: 72 E 72
          +
Sbjct: 65 K 65

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (156), Expect = 4e-15
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 98  PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           PY A+  Y     DE+ L EGE V V+ K  DGW+V   ++    G FP  Y++
Sbjct: 2   PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI--RKDDVTGYFPSMYLQ 53

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 3e-11
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
           A   + A    E+SL++GE V +I ++ + W+  R     G FP  Y++
Sbjct: 4  VAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 53

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (158), Expect = 4e-15
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCD----DGWYVGSSQRSGCFGTFPGNYVERAS 154
           Y A+Y +K +N +EL +   + + ++E  D      W++   + +G  G  P NY+ +  
Sbjct: 16  YFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLA--EVNGKKGYVPSNYIRKTE 73

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 1e-12
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVD----NNWFEGRIGTRRGIFPVTYVEQQSRA 77
            A + F A+   ELS+   + + ++   D      W+   +  ++G  P  Y+ +    
Sbjct: 16 YFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESG 75

Query: 78 TPSG 81
            SG
Sbjct: 76 PSSG 79

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (157), Expect = 5e-15
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVME-KCDDGWYVGSSQRSGCFGTFPGNYVE 151
           A Y++K   DDEL  + G+ + V+  +CD  WY    + +G  G  P NY+E
Sbjct: 5   AKYDFKATADDELSFKRGDILKVLNEECDQNWYKA--ELNGKDGFIPKNYIE 54

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (150), Expect = 4e-14
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIR-RVDNNWFEGRIGTRRGIFPVTYVEQQ 74
          +A AK++F A    ELS  +G+++ ++    D NW++  +  + G  P  Y+E +
Sbjct: 2  EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 56

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (156), Expect = 9e-15
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
           S    Y ALY Y      +L   EGE + V +K D  W+ G        G FP NYV+  
Sbjct: 6   SGGEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTG--SIGDRSGIFPSNYVKPK 62

Query: 154 S 154
            
Sbjct: 63  D 63

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (150), Expect = 6e-14
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
          +  A + + +    +L+  +GE + + ++ D  W+ G IG R GIFP  YV+ +     S
Sbjct: 10 EYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSGPSS 68

Query: 81 G 81
          G
Sbjct: 69 G 69

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.4 bits (154), Expect = 1e-14
 Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           + Y++  +N  EL + + + + +++     W V     SG  G  P N ++ 
Sbjct: 6   SKYDFVARNSSELSVMKDDVLEILDDRRQWWKVR--NASGDSGFVPNNILDI 55

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.8 bits (129), Expect = 5e-11
 Identities = 12/51 (23%), Positives = 26/51 (50%)

Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          A++K++FVA+   ELS++K +++ ++      W         G  P   ++
Sbjct: 4  AKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILD 54

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.7 bits (155), Expect = 1e-14
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE 151
           Y+ +          L L  G+ V + +      W+ G +  +   G FP N V 
Sbjct: 13  YYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.3 bits (102), Expect = 4e-07
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 9/61 (14%)

Query: 21 QARAKFNFVA------QTHLELSLVKGELVTLIRRVD-NNWFEGRIGT--RRGIFPVTYV 71
          +      +             L L  G++V L +    +NW+EGR       G FP   V
Sbjct: 6  KMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 65

Query: 72 E 72
           
Sbjct: 66 H 66

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 63.0 bits (153), Expect = 1e-14
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
           ALY+Y+  +  EL LR  E  ++++  +  W+    +  G  G  P +Y+ 
Sbjct: 3   ALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKN-GHEGYAPSSYLV 52

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 52.2 bits (125), Expect = 2e-10
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQ 73
           A +++      EL+L   E   L+   + +W+  +      G  P +Y+ +
Sbjct: 2  IALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE 53

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.5 bits (152), Expect = 2e-14
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE 151
           + ALY++    D+ L + +GE + V+       W     Q     G  P NY+ 
Sbjct: 3   FVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEA--QTKNGQGWVPSNYIT 54

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (126), Expect = 1e-10
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDN-NWFEGRIGTRRGIFPVTYVE 72
           A ++FVA     LS+ KGE + ++    N  W E +    +G  P  Y+ 
Sbjct: 4  VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYIT 54

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.9 bits (153), Expect = 2e-14
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           A+Y+++     +L L  G+   ++EK D  W+     + G  G  P NYV    
Sbjct: 7   AMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARD-KYGSEGYIPSNYVTGKK 59

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.8 bits (132), Expect = 2e-11
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQS 75
           A ++F A    +L L +G+   ++ + D +W+  R      G  P  YV  + 
Sbjct: 6  VAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (154), Expect = 2e-14
 Identities = 21/61 (34%), Positives = 28/61 (45%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
           S    Y ALY ++ +N DE+    G+ + V EK             G FG FP NYVE+ 
Sbjct: 3   SGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKM 62

Query: 154 S 154
            
Sbjct: 63  P 63

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 3e-12
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPVTYVEQQSRAT 78
            RA + F A+ H E+S   G+++ +  +      W  G      G FP  YVE+   + 
Sbjct: 7  GYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSE 66

Query: 79 PSGAPVDQT 87
             A   + 
Sbjct: 67 NEKAVSPKK 75

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (152), Expect = 3e-14
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 17 LSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNN---WFEGRIGTRRGIFPVTYVE 72
          +++G   A +++  Q   EL + +G+ +T+I R D +   W+  R+  + G  P   + 
Sbjct: 2  MNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 60

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (146), Expect = 2e-13
 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDD---GWYVGSSQRSGCFGTFPGNYVE 151
            +AL++Y+PQNDDEL ++EG+ + ++ + D+    W+    + +   G  P N + 
Sbjct: 7   IYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWA--RLNDKEGYVPRNLLG 60

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (152), Expect = 3e-14
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 92  THSDPVPYH---ALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPG 147
           + S   P+    ALY  K ++D EL    G     +      GW  G    +G  G  P 
Sbjct: 3   SGSSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEG--TLNGKTGLIPE 60

Query: 148 NYVERAS 154
           NYVE  S
Sbjct: 61  NYVEFLS 67

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (140), Expect = 2e-12
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYVE 72
          +A+A +   A+   ELS   G +   +       W EG +  + G+ P  YVE
Sbjct: 12 KAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVE 64

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (152), Expect = 3e-14
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
            + +   AL ++  + D+ L   + + + V+E+ ++ W+    +  G  G FP +YV+  
Sbjct: 8   VENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQENWWFG---EVHGGRGWFPKSYVKII 64

Query: 154 S 154
            
Sbjct: 65  P 65

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (141), Expect = 1e-12
 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
          +A+A  ++ A+    L+  K +++T++ +   NW+ G +   RG FP +YV+
Sbjct: 12 KAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVK 62

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.7 bits (152), Expect = 4e-14
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 13/65 (20%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEK-----CDDGWYVGSSQR--------SGCFGTFPG 147
           A ++Y   + DEL+L+ G+ V V+        D+GW +G  +           C G FP 
Sbjct: 17  AQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPE 76

Query: 148 NYVER 152
           N+ ER
Sbjct: 77  NFTER 81

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.0 bits (119), Expect = 2e-09
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 15/68 (22%)

Query: 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDN-----NWFEGRIGT----------RRG 64
           + +A+ ++ A    EL L  G++V +I   +       W  G   +           RG
Sbjct: 13 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRG 72

Query: 65 IFPVTYVE 72
          +FP  + E
Sbjct: 73 VFPENFTE 80

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (150), Expect = 4e-14
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 99  YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
           Y A+ +Y+  +  E+ L  G+ V V+EK + GW+    Q     G  P +++E 
Sbjct: 5   YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFC--QMKAKRGWIPASFLEP 56

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (135), Expect = 7e-12
 Identities = 11/52 (21%), Positives = 30/52 (57%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
            RA  ++   +  E++L  G++V ++ + ++ W+  ++  +RG  P +++E
Sbjct: 4  TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE 55

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (150), Expect = 6e-14
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDD--GWYVGSSQRSGCFGTFPGNYVE 151
            LY +    ++EL   +GET+ V+EK ++   W+   + R G  G  P NYV 
Sbjct: 11  TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR-GQVGLVPKNYVV 62

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 5e-11
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDN--NWFEGRIGT-RRGIFPVTYVE 72
             +  + F + T  EL+  KGE + +I + +N   W++ +    + G+ P  YV 
Sbjct: 7  HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVV 62

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.3 bits (149), Expect = 6e-14
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 4/53 (7%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD--DGWYVGSSQRSGCFGTFPGNYVE 151
           ALY++  +   +L  R+G+ + +++K D  + W+ G  + +G  G FP NYVE
Sbjct: 6   ALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTG--RVNGREGIFPANYVE 56

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (144), Expect = 3e-13
 Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 2/54 (3%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPVTYVE 72
          +A A ++F  +   +L   KG+++T++++ D  N+W+ GR+  R GIFP  YVE
Sbjct: 3  KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 56

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.7 bits (147), Expect = 1e-13
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVE 151
            LY Y  ++DDE+ +  G+ + ++ +    GW   ++  +G  G  P  Y+ 
Sbjct: 4   VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 55

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.2 bits (130), Expect = 3e-11
 Identities = 9/55 (16%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTR---RGIFPVTYVE 72
          + +  + +V +   E+++  G+ ++L+ R   + +           G+ P TY+ 
Sbjct: 1  ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 55

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.9 bits (145), Expect = 3e-13
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 101 ALYNYKP-QNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVERAS 154
            ++ +    N   L   +G+ + ++   + DGW  G    +   G FP +Y +  S
Sbjct: 12  TIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS 67

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.8 bits (111), Expect = 3e-08
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 21 QARAKFNFVAQTHL-ELSLVKGELVTLIRRVDNNWF-EGRIGT--RRGIFPVTYVE 72
          + +  F   A  +   LS  +G+++TL+   + + +  G   T   RG FP +Y +
Sbjct: 9  KVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (138), Expect = 4e-12
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 7/57 (12%)

Query: 101 ALYNYKPQNDD-ELELREGETVFVMEKCD-----DGWYVGSSQRSGCFGTFPGNYVE 151
           ALY++ P+N + E+ L++G+ + ++ K D       W+   + ++G  G  P NY+E
Sbjct: 10  ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNYIE 65

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (127), Expect = 1e-10
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 9/66 (13%)

Query: 14 PKKLSEGQARAKFNFVAQTH-LELSLVKGELVTLIRRVD-----NNWFEGRIGT-RRGIF 66
          P KL    ARA ++FV +   +E++L KG+L+ ++ + D     ++W++ R      G  
Sbjct: 2  PSKL--EFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYI 59

Query: 67 PVTYVE 72
          P  Y+E
Sbjct: 60 PYNYIE 65

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (132), Expect = 3e-11
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 101 ALYNYKPQ------NDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
           A Y+Y P        + EL L  G+ ++V    D+  +       G  G  P N+V+   
Sbjct: 22  ARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQ 81

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 2e-06
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 8/71 (11%)

Query: 21 QARAKFNFVAQTHL------ELSLVKGELVTLIRRVDNNWF--EGRIGTRRGIFPVTYVE 72
             A++++            EL L  G+ + +   +D + F     +  +RG+ P  +V+
Sbjct: 19 LCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVD 78

Query: 73 QQSRATPSGAP 83
                   A 
Sbjct: 79 FVQDNESRLAS 89

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (127), Expect = 1e-10
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 94  SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVG----SSQRSGCFGTFPGNY 149
           S       + +Y    ++E+ + +GE V V+        +     S       G  PG+ 
Sbjct: 5   SSGSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSI 64

Query: 150 VERAS 154
           +   S
Sbjct: 65  LAPFS 69

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (95), Expect = 5e-06
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 7/70 (10%)

Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT------RRGIFPVTYV 71
          S        ++ A    E+ + +GE+V ++     N                G  P + +
Sbjct: 6  SGSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSIL 65

Query: 72 EQQSRATPSG 81
             S  + SG
Sbjct: 66 APFSGPS-SG 74

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 8e-10
 Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 9/60 (15%)

Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWY---------VGSSQRSGCFGTFPGNYVE 151
           AL +Y   +   L +  G+ V+V  K                     +   G FP + V 
Sbjct: 26  ALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVR 85

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 1e-07
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 11/79 (13%)

Query: 20  GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFE-----------GRIGTRRGIFPV 68
             A A  +++A     L++ +G++V +  ++                 G +  R G FP 
Sbjct: 22  SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPS 81

Query: 69  TYVEQQSRATPSGAPVDQT 87
           + V +     P    V   
Sbjct: 82  SIVREDQTLKPGKVDVKTD 100

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 7e-09
 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 90  IDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCF--GTFPG 147
           +  +     + A  N+    D ++ L EG+ V V++K D                G    
Sbjct: 11  LARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYS 70

Query: 148 NYVERAS 154
           ++++  +
Sbjct: 71  SFLKPYN 77

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 2e-06
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD----NNWFEGRIGTRRGIFPVTYVEQ 73
           E   +A+ NF A   L++SL++G+LV +I++ D     N +    G  +G    ++++ 
Sbjct: 16 PEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKP 75

Query: 74 QSRATPS 80
           +     
Sbjct: 76 YNPRRSH 82

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.2 bits (114), Expect = 2e-08
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 9/67 (13%)

Query: 101 ALYNYKPQNDD-----ELELREGETVFVMEKCDDGWY----VGSSQRSGCFGTFPGNYVE 151
           AL++Y    D       L  R G+ + V++  D+ W+    V S   +   G  P     
Sbjct: 6   ALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV 65

Query: 152 RASLALR 158
                 R
Sbjct: 66  ERREWSR 72

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 5e-07
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 11/70 (15%)

Query: 22 ARAKFNFVAQT-----HLELSLVKGELVTLIRRVDNNWFEGRIGT------RRGIFPVTY 70
           RA F++            LS   G+++ +I   D  W++ R           G  P   
Sbjct: 4  IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKR 63

Query: 71 VEQQSRATPS 80
            ++   +  
Sbjct: 64 RVERREWSRL 73

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 48.0 bits (114), Expect = 2e-08
 Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 16/88 (18%)

Query: 71  VEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDE-------LELREGETVFV 123
            E+Q++A    A                      Y    +D+       +     + + V
Sbjct: 4   AERQAQAQLEKAKTKPVA--------FAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHV 55

Query: 124 MEKCDDGWYVG-SSQRSGCFGTFPGNYV 150
            EK ++ W++G   +     G  P    
Sbjct: 56  KEKFNNDWWIGRLVKEGCEIGFIPSPVK 83

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 10/81 (12%)

Query: 9  KIRTAPKKLSEGQARAKFNFVAQ-------THLELSLVKGELVTLIRRVDNNWFEGRI-- 59
          ++  A  K      R    + A          + +S    + + +  + +N+W+ GR+  
Sbjct: 11 QLEKAKTKPVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVK 70

Query: 60 -GTRRGIFPVTYVEQQSRATP 79
           G   G  P     +  R   
Sbjct: 71 EGCEIGFIPSPVKLENMRLQH 91

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 3e-06
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 20/91 (21%)

Query: 71  VEQQSRATPSGAPVDQTLHIDTHSDPVPYH--ALYNYKPQNDD-------ELELREGETV 121
            EQQ+      A           S PV +      +Y    D+        +     + +
Sbjct: 6   REQQAAIQLERAK----------SKPVAFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFL 55

Query: 122 FVMEKCDDGWYVG-SSQRSGCFGTFPGNYVE 151
            + EK ++ W++G   +     G  P     
Sbjct: 56  HIKEKYNNDWWIGRLVKEGCEIGFIPSPLRL 86

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 3e-05
 Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 10/81 (12%)

Query: 13 APKKLSEGQARAKFNFVAQ-------THLELSLVKGELVTLIRRVDNNWFEGRI---GTR 62
          A  K      +   ++              +S    + + +  + +N+W+ GR+   G  
Sbjct: 17 AKSKPVAFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCE 76

Query: 63 RGIFPVTYVEQQSRATPSGAP 83
           G  P     +  R       
Sbjct: 77 IGFIPSPLRLENIRIQQEQKR 97

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 5e-05
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 19/90 (21%)

Query: 71  VEQQSRATPSGAPVDQTLHIDTHSDPVPYH--ALYNYKPQNDD-------ELELREGETV 121
           VE Q++     A             PV +      +Y    D+        +     + +
Sbjct: 6   VESQAQQQLERAK----------HKPVAFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFL 55

Query: 122 FVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
            + EK  + W++G   + G    F  +   
Sbjct: 56  HIKEKYSNDWWIGRLVKEGGDIAFIPSPQR 85

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 5e-05
 Identities = 15/111 (13%), Positives = 29/111 (26%), Gaps = 15/111 (13%)

Query: 13  APKKLSEGQARAKFNFVAQ-------THLELSLVKGELVTLIRRVDNNWFEGRIGTRRG- 64
           A  K      R   ++              ++    + + +  +  N+W+ GR+    G 
Sbjct: 17  AKHKPVAFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGD 76

Query: 65  -IFPVTYVE------QQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQ 108
             F  +         +Q +             I     P P  A    K  
Sbjct: 77  IAFIPSPQRLESIRLKQEQKARRSGNPSSLSDIGNRRSPPPSLAKQKQKQA 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	191
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.74
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.54
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.54
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.54
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.54
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.53
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.53
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.53
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.52
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.52
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.52
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.51
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.5
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.5
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.5
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.48
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.48
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.48
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.48
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.47
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.47
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.46
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.46
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.46
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.45
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.45
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.44
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.44
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.44
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.43
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.43
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.43
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.42
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.42
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.41
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.41
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.41
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.41
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.41
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.41
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.4
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.4
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.4
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.4
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.4
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.4
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.39
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.39
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.39
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.39
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.38
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.38
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.38
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.38
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.38
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.37
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.37
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.37
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.36
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.36
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.36
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.36
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.35
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.35
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.35
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.35
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.35
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.34
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.34
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.34
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.33
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.32
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.28
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.27
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.27
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.24
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.23
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.23
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.22
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.2
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.19
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.18
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.16
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.16
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.15
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.15
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.1
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.08
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	98.97
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	98.92
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.64
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.63
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	96.76
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	95.95

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=9.4e-19  Score=116.83  Aligned_cols=88  Identities=30%  Similarity=0.559  Sum_probs=71.6

Q ss_pred             CCeeeEecCCchhcccCCCCCCCCCCccccccCCCCCccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCC
Q psy15854         60 GTRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRS  139 (191)
Q Consensus        60 ~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~  139 (191)
                      .|++|+||.+|++.+........+..        ....+++|+|||.++..+||+|++||+|.|++..+++||.++.  +
T Consensus         6 ~G~~G~~P~~yv~~~~~~~~~~~~~~--------~~~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~--~   75 (98)
T d1udla_           6 SGQKGWFPASHVKLLGPSSERATPAF--------HPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEI--N   75 (98)
T ss_dssp             SSCCSSCCCCCCCCCSCCCCCCCSCC--------CCSEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBS--S
T ss_pred             CCceeeEcccceeECCCcccccCCCC--------CCccEEEEccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEE--C
Confidence            67999999999998865432211111        1123689999999999999999999999999999999999997  7


Q ss_pred             CcEEEEcCCCeeeccccc
Q psy15854        140 GCFGTFPGNYVERASLAL  157 (191)
Q Consensus       140 g~~G~vP~~~v~~i~~~~  157 (191)
                      |+.|+||.+||+.+....
T Consensus        76 g~~G~~P~nyVe~~~~~~   93 (98)
T d1udla_          76 GVTGLFPSNYVKMTTDSS   93 (98)
T ss_dssp             SCBCCEETTSEEECCCCS
T ss_pred             CeEEEEchHHEEECCCCC
Confidence            999999999999987543

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=8.8e-15  Score=87.77  Aligned_cols=57  Identities=33%  Similarity=0.670  Sum_probs=53.1

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      .++|+|+|.+...++|+|++||++.+++..+++||.++..++|+.|+||++||+.+.
T Consensus         2 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~in   58 (58)
T d1jo8a_           2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN   58 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEEccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEcC
Confidence            389999999999999999999999999999999999998778999999999999863

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=7.1e-15  Score=87.76  Aligned_cols=55  Identities=33%  Similarity=0.654  Sum_probs=52.2

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      +.++|+++|.++..++|+|.+|+.+.+++..+++||.++.+|+.|+||++|++++
T Consensus         2 ~yarAlydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yve~i   56 (57)
T d1utia_           2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM   56 (57)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEEHHHEEEc
Confidence            4789999999999999999999999999998899999999999999999999875

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.4e-15  Score=87.16  Aligned_cols=54  Identities=39%  Similarity=0.814  Sum_probs=50.8

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .++|+++|.++..++|+|++||++.|++..+++||.++.  +|+.|+||.+||+++
T Consensus         3 yv~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           3 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEECcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEE--CCeEEEEEHhHEEEC
Confidence            579999999999999999999999999998899999998  799999999999875

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.8e-15  Score=98.50  Aligned_cols=60  Identities=30%  Similarity=0.642  Sum_probs=55.0

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ...+++|+|+|+++..+||+|++|++|.|++..+++||+++.+|++|+||.+||+.+...
T Consensus        33 ~~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~nyVe~~~~~   92 (98)
T d1udla_          33 PVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDS   92 (98)
T ss_dssp             CSEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCC
T ss_pred             CccEEEEccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEECCeEEEEchHHEEECCCC
Confidence            345799999999999999999999999999998899999999999999999999988653

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.53  E-value=1e-14  Score=87.39  Aligned_cols=56  Identities=41%  Similarity=0.768  Sum_probs=52.6

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhccc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   75 (191)
                      ..++|+++|.++..++|+|.+|+.+.|++..+.+||.++.+|+.|+||.+||++++
T Consensus         3 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yvep~n   58 (58)
T d1sema_           3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPYN   58 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCeEEEEEhhhEEECc
Confidence            36899999999999999999999999999999999999999999999999998763

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1e-14  Score=87.08  Aligned_cols=54  Identities=35%  Similarity=0.700  Sum_probs=51.1

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .++|+|+|.++..++|+|.+||++.+++..+++||.++.  +|+.|+||++||+++
T Consensus         3 yarAlydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yve~i   56 (57)
T d1utia_           3 WARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL--HNKLGLFPANYVAPM   56 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEE--CCcEEEEEHHHEEEc
Confidence            489999999999999999999999999999999999998  799999999999976

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.9e-15  Score=88.87  Aligned_cols=57  Identities=33%  Similarity=0.788  Sum_probs=53.0

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      ..++|+|+|.++..++|+|.+||++.+++..+++||.+++.++|+.|+||++||+.|
T Consensus         4 ~~~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           4 KIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CCEECCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             cEEEECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            358999999999999999999999999999999999999877899999999999875

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-14  Score=86.59  Aligned_cols=54  Identities=30%  Similarity=0.632  Sum_probs=51.2

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      .++|+++|.++..++|+|.+|+.+.++...+++||.++.+|++|+||.+||+++
T Consensus         3 yv~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           3 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEEHhHEEEC
Confidence            579999999999999999999999999988899999999999999999999864

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.2e-15  Score=89.02  Aligned_cols=57  Identities=28%  Similarity=0.649  Sum_probs=53.3

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhccc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS   75 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   75 (191)
                      +..++|+++|.++..++|+|.+|+++.|++..+++||.++.+|+.|+||.+||++..
T Consensus         5 g~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~yVe~~~   61 (62)
T d1k4us_           5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCSC
T ss_pred             CCEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHeEECC
Confidence            347899999999999999999999999999999999999999999999999998764

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.52  E-value=1.8e-14  Score=86.24  Aligned_cols=55  Identities=31%  Similarity=0.639  Sum_probs=51.5

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      ..++|+|+|.++..++|+|.+||+|.|++..+.|||.++.  +|+.|+||.+||+++
T Consensus         3 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yvep~   57 (58)
T d1sema_           3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL--NNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEEE--CCeEEEEEhhhEEEC
Confidence            3589999999999999999999999999999999999998  789999999999975

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=1.4e-14  Score=86.73  Aligned_cols=54  Identities=33%  Similarity=0.679  Sum_probs=51.1

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ   73 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~   73 (191)
                      ++++|+++|.++..++|+|++|+++.+++..+.+||.++.+|+.|+||++||+.
T Consensus         3 rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~~   56 (58)
T d1uj0a_           3 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT   56 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEES
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEEECCeEEEEehHhEee
Confidence            479999999999999999999999999999889999999999999999999864

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.51  E-value=1.8e-14  Score=85.38  Aligned_cols=53  Identities=21%  Similarity=0.546  Sum_probs=50.2

Q ss_pred             EEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      ++|+++|.++..++|+|++||.+.+++..+++||.++.  +|+.|+||.+||+.+
T Consensus         3 ~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           3 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEEE--CCeEEEEeHHHEEEC
Confidence            78999999999999999999999999999999999998  799999999999875

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.8e-14  Score=85.30  Aligned_cols=55  Identities=29%  Similarity=0.674  Sum_probs=51.4

Q ss_pred             EEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      ++|++||.++..++|+|++||++.++++.+++||.++..++|+.|+||.+||+++
T Consensus         3 ~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           3 FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            6799999999999999999999999999888999999876899999999999875

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=2.3e-14  Score=85.77  Aligned_cols=53  Identities=32%  Similarity=0.718  Sum_probs=49.9

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCee
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE  151 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~  151 (191)
                      .+++|+|+|.++..++|+|++||++.|++..+.+||.++.  +|+.|+||++||+
T Consensus         3 rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yV~   55 (58)
T d1uj0a_           3 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGEN--HRGTGLFPSNFVT   55 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEE
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEEE--CCeEEEEehHhEe
Confidence            3689999999999999999999999999998899999998  6999999999987

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.7e-14  Score=87.65  Aligned_cols=56  Identities=32%  Similarity=0.722  Sum_probs=52.0

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      +.+++|+|+|.++..++|+|.+||+|.|++..+++||.++.  +|+.|+||.+||++.
T Consensus         5 g~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~--~g~~G~~P~~yVe~~   60 (62)
T d1k4us_           5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGES--KGKVGIFPKVFVEDS   60 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEEC--SSCEEEECGGGCCCS
T ss_pred             CCEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEE--CCcEEEEchHHeEEC
Confidence            34689999999999999999999999999999999999998  799999999999875

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.50  E-value=2.4e-14  Score=84.80  Aligned_cols=54  Identities=22%  Similarity=0.624  Sum_probs=50.9

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      .++|+++|.++.+++|+|.+|+.+.+++..+++||.++.+|+.|+||++|++.+
T Consensus         2 ~~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           2 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEEECCeEEEEeHHHEEEC
Confidence            478999999999999999999999999999999999999999999999999864

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=3.8e-14  Score=84.57  Aligned_cols=54  Identities=22%  Similarity=0.599  Sum_probs=50.5

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeee
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER  152 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~  152 (191)
                      .++|++||.++..++|+|++||+|.|+...+++||.++.. +|+.|+||++||++
T Consensus         3 ~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~g~~G~vP~~yve~   56 (57)
T d1ckaa_           3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS-EGKRGMIPVPYVEK   56 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECT-TSCEEEEEGGGEEC
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEEC-CCCEEEEcHHHeEE
Confidence            4899999999999999999999999999999999999975 68999999999985

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.48  E-value=3.1e-14  Score=83.68  Aligned_cols=53  Identities=26%  Similarity=0.557  Sum_probs=48.8

Q ss_pred             EEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeee
Q psy15854         99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER  152 (191)
Q Consensus        99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~  152 (191)
                      ++|+|+|.++..++|+|++||++.+++..+++||.++.. +|+.|+||++||++
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~-~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDK-NGHEGYAPSSYLVE   53 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEECT-TSCEEEECGGGEEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEeC-CCCEEEEeHHHEeC
Confidence            478999999999999999999999999989999999864 78999999999974

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.5e-14  Score=86.69  Aligned_cols=55  Identities=20%  Similarity=0.516  Sum_probs=52.1

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      ..++|+++|.++..++|+|++|+++.+++..+.+||.++.+|++|+||++|++++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~~g~~G~~P~~yve~l   57 (58)
T d1ng2a1           3 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL   57 (58)
T ss_dssp             EEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCS
T ss_pred             eEEEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEEECCCCcEEcHhHEEEC
Confidence            3689999999999999999999999999999999999999999999999999876

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.4e-14  Score=82.96  Aligned_cols=51  Identities=39%  Similarity=0.666  Sum_probs=48.3

Q ss_pred             EEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCee
Q psy15854         99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE  151 (191)
Q Consensus        99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~  151 (191)
                      ++|+++|.++..++|+|.+||+|.|+++.++|||.++.  +|+.|+||++||+
T Consensus         3 yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~--~g~~G~~P~~yve   53 (53)
T d1wlpb1           3 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRK--DDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEECSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEES--SSCEEEECSTTEE
T ss_pred             EEEeeeECCCCCCEecCCCCCEEEEEeecCCceEEEEE--CCcEeEecHHhCC
Confidence            68999999999999999999999999999999999997  7999999999985

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.7e-14  Score=83.28  Aligned_cols=52  Identities=29%  Similarity=0.458  Sum_probs=49.4

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchh
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE   72 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~   72 (191)
                      .++|+++|+++..++|+|.+|+++.|+++.+++||.++.+|++|+||++|++
T Consensus         2 ~yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~~g~~G~~P~~yve   53 (53)
T d1wlpb1           2 PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEEECSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEESSSCEEEECSTTEE
T ss_pred             eEEEeeeECCCCCCEecCCCCCEEEEEeecCCceEEEEECCcEeEecHHhCC
Confidence            4689999999999999999999999999999999999999999999999985

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.7e-14  Score=85.85  Aligned_cols=57  Identities=26%  Similarity=0.679  Sum_probs=52.8

Q ss_pred             EEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      ++|+|||.++..++|+|++||.+.+++...++||.++..++|+.|+||.+||+++..
T Consensus         5 ~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~~s   61 (64)
T d1fmka1           5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS   61 (64)
T ss_dssp             EEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTS
T ss_pred             EEECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEECcc
Confidence            789999999999999999999999999888899999987688999999999998753

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.8e-14  Score=90.20  Aligned_cols=60  Identities=32%  Similarity=0.640  Sum_probs=54.6

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ...++|+|+|.++..++|+|++||+|.|++..+++||.++.  .|+.|+||.+||+.+....
T Consensus        10 ~~~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~i~~~~   69 (76)
T d1ujya_          10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTL--NGRTGWFPSNYVREIKSSE   69 (76)
T ss_dssp             CEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEE--TTEEEEECTTTSEECCHHH
T ss_pred             CEEEEECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEEE--CCcEEEEchHHEEECCCCC
Confidence            44689999999999999999999999999998899999998  6999999999999987544

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.5e-13  Score=87.71  Aligned_cols=62  Identities=19%  Similarity=0.367  Sum_probs=54.5

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEe---CCCCcEEEEcCCCeeeccccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSS---QRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~---~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      +..++|+|+|.++..++|+|.+||+|.|+++.+.+||.+++   .+.++.||||.+||+.+....
T Consensus         7 g~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~~~~   71 (80)
T d1ue9a_           7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSS   71 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSCC
T ss_pred             CCEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEECCCCC
Confidence            34699999999999999999999999999999999999986   235679999999999987543

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=9.3e-14  Score=87.25  Aligned_cols=59  Identities=24%  Similarity=0.499  Sum_probs=52.7

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..+++|+|+|.++..++|+|++||+|.|++.. ++||+++.  +|+.||||.+||+.+....
T Consensus        10 ~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~~-~~ww~g~~--~g~~G~fP~~yve~i~~~~   68 (74)
T d1j3ta_          10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGEV--HGGRGWFPKSYVKIIPGSE   68 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEEC-SSEEEEES--TTCCCEEEGGGEEECCCST
T ss_pred             CeEEEEccCCCCCCCCEecCCCCCEEEEEEcc-CCeEEEEE--CCcEEEEchhhEEECCCCC
Confidence            45799999999999999999999999999884 58999997  7999999999999986544

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=1.1e-13  Score=85.24  Aligned_cols=58  Identities=26%  Similarity=0.529  Sum_probs=52.8

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      .++|+|+|.+...++|+|++||++.+++..+.+||.++.. +|+.||||++||+.+...
T Consensus         4 ~v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~g~~G~~P~~yV~~~~~~   61 (67)
T d1gl5a_           4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDK-YGSEGYIPSNYVTGKKSN   61 (67)
T ss_dssp             CEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECS-SSCEEEEETTSEESSTTT
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEEC-CCCEEEEEhHHeEEecCC
Confidence            3899999999999999999999999999998899999874 789999999999987654

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=8.6e-14  Score=83.33  Aligned_cols=55  Identities=29%  Similarity=0.616  Sum_probs=51.0

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhccc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   75 (191)
                      .++|+++|.++..++|+|.+|+.+.+++..+++||.++.  +|++|+||++||+.++
T Consensus         2 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~in   58 (58)
T d1jo8a_           2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN   58 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEEccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEcC
Confidence            589999999999999999999999999999999999987  5799999999998763

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.8e-13  Score=93.74  Aligned_cols=61  Identities=34%  Similarity=0.601  Sum_probs=55.2

Q ss_pred             CCccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         95 DPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        95 ~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      .+..++|+|+|.+...++|+|.+||+|.|+++.+.|||.|+.  +|+.||||.+||+.+....
T Consensus        13 ~g~~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~~~   73 (118)
T d1ng2a2          13 AGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRK--DDVTGYFPSMYLQKSGQDV   73 (118)
T ss_dssp             TCEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEE--TTEEEEEEGGGEEETTSCH
T ss_pred             CCcEEEECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEEE--CCeEEEEehhhEEECCCcc
Confidence            345689999999999999999999999999999999999998  7999999999999886543

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=1.2e-13  Score=82.57  Aligned_cols=54  Identities=31%  Similarity=0.724  Sum_probs=49.0

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEEC--CCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~--~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      +++|+|+|.++..++|+|++||++.|+++.  ..+||.++.  +|++|+||.+||+.|
T Consensus         3 ~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~--~g~~G~vP~~yve~i   58 (58)
T d1oota_           3 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV--NGREGIFPANYVELV   58 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             eEEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEE--CCcEEEEcHHHEEEC
Confidence            589999999999999999999999999876  357999987  799999999999875

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.1e-14  Score=86.10  Aligned_cols=54  Identities=28%  Similarity=0.590  Sum_probs=50.8

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .++|++||.++..++|++++||++.++++.+++||.++.  +|+.|+||++||+++
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~--~g~~G~~P~~yve~l   57 (58)
T d1ng2a1           4 TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQM--KAKRGWIPASFLEPL   57 (58)
T ss_dssp             EEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEE--CCCCCCCCGGGCCCS
T ss_pred             EEEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEEE--CCCCcEEcHhHEEEC
Confidence            478999999999999999999999999999999999998  689999999999876

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.2e-13  Score=82.37  Aligned_cols=53  Identities=28%  Similarity=0.658  Sum_probs=49.8

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQ   73 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~   73 (191)
                      .++|+++|.++..++|+|.+|+++.++...+++||.++. +|+.|+||++||++
T Consensus         3 ~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEE
Confidence            579999999999999999999999999999999999987 68999999999975

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=1.8e-13  Score=81.86  Aligned_cols=54  Identities=37%  Similarity=0.830  Sum_probs=49.6

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecC--CCEEEEEeCCeeeEecCCchhcc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~--~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      +++|+++|.++..++|+|.+|+.+.+++..+  .+||.+..+|++|+||.+|++.+
T Consensus         3 ~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~~g~~G~vP~~yve~i   58 (58)
T d1oota_           3 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   58 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEECCcEEEEcHHHEEEC
Confidence            6899999999999999999999999998764  47999999999999999999864

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.9e-13  Score=92.66  Aligned_cols=60  Identities=25%  Similarity=0.413  Sum_probs=55.1

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      .+..++|+|+|.+...++|+|.+|++|.|+++.+.+||.|+.+|++||||.+||+.+...
T Consensus        13 ~g~~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   72 (118)
T d1ng2a2          13 AGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQD   72 (118)
T ss_dssp             TCEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTSC
T ss_pred             CCcEEEECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEEECCeEEEEehhhEEECCCc
Confidence            345789999999999999999999999999998899999999999999999999987543

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.8e-13  Score=85.02  Aligned_cols=58  Identities=26%  Similarity=0.530  Sum_probs=52.8

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ..+++|+|+|.++..++|+|.+|++|.|++. .++||.++.+|++||||.+||+.+...
T Consensus        10 ~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~-~~~ww~g~~~g~~G~fP~~yve~i~~~   67 (74)
T d1j3ta_          10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCCS
T ss_pred             CeEEEEccCCCCCCCCEecCCCCCEEEEEEc-cCCeEEEEECCcEEEEchhhEEECCCC
Confidence            4479999999999999999999999999987 568999999999999999999998653

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6.9e-14  Score=84.36  Aligned_cols=56  Identities=27%  Similarity=0.578  Sum_probs=51.2

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhcc
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   74 (191)
                      +..++|+++|.++..++|+|.+||++.++...+.+||.+..  +|+.|+||++||+.+
T Consensus         3 G~~~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           3 GKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CCCEECCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             CcEEEECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            44689999999999999999999999999998899999987  689999999999864

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.41  E-value=8.8e-14  Score=81.70  Aligned_cols=52  Identities=19%  Similarity=0.346  Sum_probs=47.9

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhc
Q psy15854         22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQ   73 (191)
Q Consensus        22 ~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~   73 (191)
                      ++|+|+|.++..++|+|.+|+.+.++...+++||.++. +|+.|+||++|+++
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   53 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEECTTSCEEEECGGGEEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEeCCCCEEEEeHHHEeC
Confidence            47899999999999999999999999988899999986 68999999999863

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.8e-13  Score=85.46  Aligned_cols=59  Identities=20%  Similarity=0.399  Sum_probs=50.6

Q ss_pred             ccEEEeeeccCC-CCCCccCCCCCEEEEeEE-CCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQ-NDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~-~~~eLs~~~ge~v~v~~~-~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .+++|+|+|.+. ..++|+|++||+|.|+.. ..++||.+++.++++.|+||.+||+.+..
T Consensus         8 ~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i~~   68 (72)
T d1spka_           8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             CEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             CEEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEECCC
Confidence            468999999975 567899999999999865 45689999986678999999999999864

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.6e-13  Score=87.07  Aligned_cols=59  Identities=41%  Similarity=0.755  Sum_probs=52.0

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEEC--CCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~--~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..++|+|+|.++..+||+|++||+|.|+++.  +.+||.++.  +|+.||||.+||+.+....
T Consensus         6 ~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~--~g~~G~~P~~Yve~~~~~~   66 (93)
T d1uffa_           6 SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSF--QGNFGWFPCNYVEKMPSSE   66 (93)
T ss_dssp             CCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEE--TTEEEEEETTTEEECCSSS
T ss_pred             eEEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEe--CCcEEEEchHHEEECCCCC
Confidence            3589999999999999999999999999776  456888887  7999999999999986544

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.6e-13  Score=83.90  Aligned_cols=59  Identities=24%  Similarity=0.509  Sum_probs=51.5

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      +.+|+|+|+|.++..+||+|++||+|.|+... +.+||.++.. +|+.|+||.+||+.+..
T Consensus         6 g~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~-~g~~G~~P~~yve~~~~   65 (71)
T d1k9aa1           6 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNK-VGREGIIPANYVQKREG   65 (71)
T ss_dssp             TCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECT-TCCEEEEEGGGEEECCC
T ss_pred             CCEEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeC-CCCEEEEchHHeEEccc
Confidence            34699999999999999999999999999875 5578888874 78999999999998753

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=3.8e-13  Score=80.11  Aligned_cols=53  Identities=25%  Similarity=0.540  Sum_probs=47.4

Q ss_pred             EEEeeeccCCCCCCccCCCCCEEEEeEECCC-CEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         99 YHALYNYKPQNDDELELREGETVFVMEKCDD-GWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~-gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      ++|+|+|.++..++|+|++||++.++++... +||.++.  .|++|+||++||+++
T Consensus         3 ~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~--~g~~G~~P~~yv~~v   56 (57)
T d1opka1           3 FVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT--KNGQGWVPSNYITPV   56 (57)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEEC--SSCEEEEEGGGEEES
T ss_pred             EEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEEE--CCCEeEEchhheEEC
Confidence            7899999999999999999999999988655 5777876  688999999999986

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=2.3e-13  Score=83.74  Aligned_cols=55  Identities=31%  Similarity=0.662  Sum_probs=48.1

Q ss_pred             cEEEeeeccCCCCC-CccCCCCCEEEEeEECC-----CCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDD-ELELREGETVFVMEKCD-----DGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~-eLs~~~ge~v~v~~~~~-----~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .++|+|+|.++..+ +|+|++||+|.|+++.+     .|||.++.. +|+.|+||++||+.|
T Consensus         7 ~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~-~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           7 FARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-NGNIGYIPYNYIEII   67 (67)
T ss_dssp             EEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECT-TSCEEEEEGGGEEEC
T ss_pred             EEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeC-CCCEEEEEHHHEEEC
Confidence            58999999998764 89999999999998753     489999875 789999999999875

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=2.5e-13  Score=80.87  Aligned_cols=54  Identities=28%  Similarity=0.476  Sum_probs=48.9

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCC-CEEEEEeCCeeeEecCCchhcc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDN-NWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~-~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      .++|+++|.++..++|+|++|+.+.+++.... +||.++.+|++|+||++|++++
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~~g~~G~~P~~yv~~v   56 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV   56 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEES
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEEECCCEeEEchhheEEC
Confidence            47899999999999999999999999987664 5888888999999999999876

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=4e-13  Score=84.36  Aligned_cols=60  Identities=17%  Similarity=0.217  Sum_probs=53.3

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCC----CCcEEEEcCCCeeeccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQR----SGCFGTFPGNYVERASL  155 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~----~g~~G~vP~~~v~~i~~  155 (191)
                      ...++|+|||.+...++|+|.+||+|.|++..+.+||.++...    +|++||||.+||++++.
T Consensus         7 g~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~   70 (74)
T d1wfwa_           7 GSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPFSG   70 (74)
T ss_dssp             SCEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBCCS
T ss_pred             CCEEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEECCC
Confidence            4469999999999999999999999999999999999998742    46899999999998864

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=5.8e-13  Score=83.60  Aligned_cols=60  Identities=17%  Similarity=0.153  Sum_probs=54.1

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe------CCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI------GTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~------~g~~G~~P~~~v~~~~~~   77 (191)
                      .+..++|+++|.+...++|+|.+|++|.|++..+.+||.++.      .|++||||.+||+++..+
T Consensus         6 ~g~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~p   71 (74)
T d1wfwa_           6 SGSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPFSGP   71 (74)
T ss_dssp             CSCEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBCCST
T ss_pred             CCCEEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEECCCC
Confidence            345799999999999999999999999999998999999976      268999999999998765

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.4e-14  Score=87.10  Aligned_cols=58  Identities=34%  Similarity=0.678  Sum_probs=52.7

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .+++|+|+|.++..++|+|++||++.|++..+.+||.++.. +|+.|+||.+||+.+..
T Consensus         9 ~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~g~~G~vP~~yv~~~~~   66 (67)
T d1awwa_           9 KKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDK-NGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCT-TSCBCCEETTTBCCSCC
T ss_pred             EEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEEC-CCCEEEEcHHHeEECcC
Confidence            35899999999999999999999999999888899999864 78999999999998864

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.9e-13  Score=83.05  Aligned_cols=55  Identities=25%  Similarity=0.496  Sum_probs=49.7

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecC---CCEEEEEeCCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVD---NNWFEGRIGTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~---~~w~~~~~~g~~G~~P~~~v~~~   74 (191)
                      ..++|+|+|.++..++|+|++|+.+.+++..+   .+||.++.+|++|+||++||+.+
T Consensus         5 g~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           5 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY   62 (63)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECC
T ss_pred             CEEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEECCeEEEEchHHhEeC
Confidence            46899999999999999999999999997754   36999999999999999999765

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=2.2e-13  Score=81.78  Aligned_cols=55  Identities=18%  Similarity=0.384  Sum_probs=49.9

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      .++|+|||.++..++|+|.+||++.|++.. ++||.++.. +|+.|+||++||+.+.
T Consensus         3 ~a~alydf~a~~~~ELs~~~Gd~i~v~~~~-~~ww~~~~~-~g~~G~~P~nyve~i~   57 (59)
T d1i07a_           3 YAKSKYDFVARNSSELSVMKDDVLEILDDR-RQWWKVRNA-SGDSGFVPNNILDIMR   57 (59)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEECGGG-CCEEEEECT-TSCEEEEEGGGEEEEC
T ss_pred             EEEEccCCCCCCCCeeeEcCCCEEEEEEEc-CCcEEEEEc-CCCEEEECHHHeEECC
Confidence            589999999999999999999999998865 579999875 7899999999999885

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.1e-13  Score=81.43  Aligned_cols=57  Identities=28%  Similarity=0.576  Sum_probs=50.5

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .++|+|||.++..++|+|++||++.+++. .++||+++..++|+.|+||.+||+.+..
T Consensus         6 ~vvAlydy~~~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~~~g~~G~vP~~yv~~~~~   62 (65)
T d1qcfa1           6 IVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDS   62 (65)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             EEEECCcCCCCCcCccCCCCCCEEEEEEE-CCCCEEEEEccCCCEEEEchHHeEECcc
Confidence            47899999999999999999999999875 4579998887688999999999998753

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=4.1e-13  Score=82.68  Aligned_cols=57  Identities=23%  Similarity=0.434  Sum_probs=52.2

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcccCC
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~   77 (191)
                      .++|+|+|.+...++|+|++|+++.++...+.+||.++. +|+.|+||++||+.+...
T Consensus         4 ~v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yV~~~~~~   61 (67)
T d1gl5a_           4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSN   61 (67)
T ss_dssp             CEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESSTTT
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEECCCCEEEEEhHHeEEecCC
Confidence            589999999999999999999999999998889999986 689999999999987543

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.2e-13  Score=80.88  Aligned_cols=53  Identities=34%  Similarity=0.643  Sum_probs=43.7

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCeee
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVER  152 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~~  152 (191)
                      +++|+|+|.++..++|+|.+||.+.++... +++||.++.  +|+.|+||++||+.
T Consensus         2 ~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~--~g~~G~vP~nyvev   55 (56)
T d1gria1           2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIEM   55 (56)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEES--SSCEEEEEGGGEEC
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEE--CCcEEEEehhhEEE
Confidence            489999999999999999999999988764 567888886  79999999999963

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.8e-13  Score=85.43  Aligned_cols=59  Identities=27%  Similarity=0.481  Sum_probs=52.7

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ..+++|+++|.++..++|+|.+|++|.|++... .+||.++.+|+.|+||.+||+.+..+
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yve~i~~p   69 (72)
T d1ugva_          10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             CEEEEEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEEeCCCEEEEchHHEEECCCC
Confidence            446999999999999999999999999888755 46999998999999999999998754

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.8e-13  Score=83.75  Aligned_cols=57  Identities=32%  Similarity=0.542  Sum_probs=51.1

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECC--CCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCD--DGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~--~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .++|+|+|.++..++|+|.+||+|.|+++.+  ++||.++.. +|+.|+||.+||+.+..
T Consensus         8 ~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~-~G~~G~vP~~yv~~~~~   66 (71)
T d1u5sa1           8 VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNA-RGQVGLVPKNYVVVLSD   66 (71)
T ss_dssp             EEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEET-TTEEEEEETTSEEECCC
T ss_pred             EEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEEC-CCCEEEEChHHEEECCC
Confidence            4899999999999999999999999998753  489999875 78999999999999864

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4e-13  Score=80.09  Aligned_cols=54  Identities=28%  Similarity=0.500  Sum_probs=49.5

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhcc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   74 (191)
                      .++|+++|.++..++|+|++||.+.+++..+++||.++.  +|++|+||.+|++++
T Consensus         2 l~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           2 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            368999999999999999999999999998889999986  689999999999763

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=8.9e-14  Score=89.02  Aligned_cols=60  Identities=33%  Similarity=0.699  Sum_probs=53.1

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEEC---------------CCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKC---------------DDGWYVGSSQRSGCFGTFPGNYVERASLA  156 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~---------------~~gw~~~~~~~~g~~G~vP~~~v~~i~~~  156 (191)
                      .+++|+|+|.+...++|+|++||+|.|+...               +.|||.|++.++|+.|+||.+||+.+...
T Consensus         4 ~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~~~   78 (83)
T d1phta_           4 YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGRK   78 (83)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEEE
T ss_pred             CEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcCCc
Confidence            4689999999999999999999999998642               36799999877899999999999998654

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.8e-13  Score=83.76  Aligned_cols=58  Identities=28%  Similarity=0.623  Sum_probs=52.5

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ....++|+++|+++..++|+|++|+++.|++. +++||.++.+|++|+||.+||+++..
T Consensus         7 ~~~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~-~~~Ww~~~~~g~~G~vP~~yv~~~~~   64 (69)
T d1uhfa_           7 GGEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDS   64 (69)
T ss_dssp             CSEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCC
T ss_pred             CCcEEEECccCCCCCcCCcCCCCCCEEEEEEe-cCCEEEEEECCcEEEEchhhEEECCC
Confidence            45579999999999999999999999999987 46899999999999999999998853

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.2e-13  Score=86.02  Aligned_cols=56  Identities=34%  Similarity=0.697  Sum_probs=52.6

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      .++|+|+|.++..++|+|.+|++|.|++..+.+||.+..+|++|+||.+||+.+..
T Consensus        12 ~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~i~~   67 (76)
T d1ujya_          12 IVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKS   67 (76)
T ss_dssp             EEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCH
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHEEECCC
Confidence            57999999999999999999999999998889999999999999999999998754

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=7.4e-13  Score=86.52  Aligned_cols=60  Identities=27%  Similarity=0.421  Sum_probs=53.8

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEecC----CCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD----NNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~----~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ....++|+++|.++..+||+|.+|++|.|+++.+    .+||+++.+|++||||++||+++...
T Consensus        16 ~~~~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~g~~G~~P~~yv~~~~~~   79 (92)
T d1ug1a_          16 PEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPR   79 (92)
T ss_dssp             GGGEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCC
T ss_pred             CCeEEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEecccEEEEEhhhceecCCc
Confidence            3456899999999999999999999999999753    68999999999999999999988654

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=2.3e-13  Score=81.65  Aligned_cols=56  Identities=23%  Similarity=0.498  Sum_probs=50.3

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcccC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   76 (191)
                      ..++|+|+|.++..++|+|.+|+.+.+++.. ++||.+.. +|+.|+||++||+.+..
T Consensus         2 ~~a~alydf~a~~~~ELs~~~Gd~i~v~~~~-~~ww~~~~~~g~~G~~P~nyve~i~~   58 (59)
T d1i07a_           2 KYAKSKYDFVARNSSELSVMKDDVLEILDDR-RQWWKVRNASGDSGFVPNNILDIMRT   58 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGGG-CCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEEccCCCCCCCCeeeEcCCCEEEEEEEc-CCcEEEEEcCCCEEEECHHHeEECCC
Confidence            4689999999999999999999999998864 58999976 78999999999998864

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=6.9e-13  Score=82.56  Aligned_cols=59  Identities=31%  Similarity=0.648  Sum_probs=51.8

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEec-CCCEEEEEe-CCeeeEecCCchhcccC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEGRI-GTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~-~~~w~~~~~-~g~~G~~P~~~v~~~~~   76 (191)
                      ++..++|+|+|.++..+||+|.+|++|.|+... +.+||.+++ .|+.|+||.+||+.+..
T Consensus         5 ~g~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~~g~~G~~P~~yve~~~~   65 (71)
T d1k9aa1           5 SGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG   65 (71)
T ss_dssp             TTCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCC
T ss_pred             CCCEEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeCCCCEEEEchHHeEEccc
Confidence            455799999999999999999999999999875 457888987 58999999999998754

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=4.2e-13  Score=79.69  Aligned_cols=54  Identities=24%  Similarity=0.561  Sum_probs=47.2

Q ss_pred             EEEeeeccCCCCCCccCCCCCEEEEeEECC-CCEEEEEeCCCCcEEEEcCCCeee
Q psy15854         99 YHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVER  152 (191)
Q Consensus        99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~-~gw~~~~~~~~g~~G~vP~~~v~~  152 (191)
                      ++|+|||.++..++|+|++||+|.+++..+ ++||.++...+|+.|+||.+||+.
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyvev   56 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   56 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEEC
Confidence            689999999999999999999999998765 457777776689999999999973

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.7e-13  Score=81.29  Aligned_cols=54  Identities=31%  Similarity=0.561  Sum_probs=48.5

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECC---CCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCD---DGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~---~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      .++|+|+|.++..++|+|++||+|.+++..+   .|||.++.  +|+.|+||++||+.+
T Consensus         6 ~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~--~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           6 VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARL--NDKEGYVPRNLLGLY   62 (63)
T ss_dssp             EEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEE--TTEEEEEEGGGEECC
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEE--CCeEEEEchHHhEeC
Confidence            4889999999999999999999999987753   47999998  799999999999865

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.3e-13  Score=85.00  Aligned_cols=58  Identities=19%  Similarity=0.417  Sum_probs=52.6

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcccC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   76 (191)
                      ..+++|+++|.++..++|+|++|+++.|+...+.+||.++. +|+.|+||++||+++..
T Consensus         8 ~~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yv~~~~~   66 (67)
T d1awwa_           8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSCC
T ss_pred             CEEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEECcC
Confidence            44789999999999999999999999999988889999976 78999999999988753

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.2e-12  Score=83.38  Aligned_cols=59  Identities=24%  Similarity=0.527  Sum_probs=52.8

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeC-----CeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG-----TRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~-----g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+++|+++..++|+|.+|++|.|+++.+.+||.+...     +++||||.+||+.+...
T Consensus         7 g~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~~~   70 (80)
T d1ue9a_           7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPS   70 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSC
T ss_pred             CCEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEECCCC
Confidence            457999999999999999999999999999988999999763     46899999999988654

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.8e-13  Score=83.14  Aligned_cols=56  Identities=36%  Similarity=0.656  Sum_probs=50.5

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS  154 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~  154 (191)
                      ...++|+|+|.++..++|+|++||+|.|++.. ++||.++.  +++.||||.+||+++.
T Consensus         8 ~~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~~-~~Ww~~~~--~g~~G~vP~~yv~~~~   63 (69)
T d1uhfa_           8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQKD-GEWWTGSI--GDRSGIFPSNYVKPKD   63 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEEE-TTEEEECS--TTCCEEECGGGCEECC
T ss_pred             CcEEEECccCCCCCcCCcCCCCCCEEEEEEec-CCEEEEEE--CCcEEEEchhhEEECC
Confidence            34689999999999999999999999999874 57999997  7999999999999885

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.2e-12  Score=81.46  Aligned_cols=58  Identities=24%  Similarity=0.430  Sum_probs=51.6

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEecC--CCEEEEEe-CCeeeEecCCchhcccC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRI-GTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~--~~w~~~~~-~g~~G~~P~~~v~~~~~   76 (191)
                      ...++|+|+|.++..++|+|.+|+.+.|++..+  ++||.++. +|+.|+||.+|++.+..
T Consensus         6 l~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~~G~~G~vP~~yv~~~~~   66 (71)
T d1u5sa1           6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD   66 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCC
T ss_pred             cEEEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEECCCCEEEEChHHEEECCC
Confidence            346899999999999999999999999998754  47999986 78999999999999865

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.5e-13  Score=79.95  Aligned_cols=53  Identities=30%  Similarity=0.711  Sum_probs=44.4

Q ss_pred             eEEEeecCCCCCCCCccccCCCEEEEEEec-CCCEEEEEeCCeeeEecCCchhc
Q psy15854         21 QARAKFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEGRIGTRRGIFPVTYVEQ   73 (191)
Q Consensus        21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~   73 (191)
                      .++|+|+|.++..++|+|.+|+.+.++... +.+||.+..+|++|+||++||+.
T Consensus         2 ~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~~g~~G~vP~nyvev   55 (56)
T d1gria1           2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM   55 (56)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEEC
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEECCcEEEEehhhEEE
Confidence            589999999999999999999999988764 46888898899999999999864

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=5.3e-13  Score=83.30  Aligned_cols=57  Identities=33%  Similarity=0.495  Sum_probs=50.7

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEECC-CCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~-~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .+++++|+|.++..++|+|.+||+|.|++..+ ++||.++.  +|+.|+||.+||+.+..
T Consensus        11 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~--~g~~G~~P~~yve~i~~   68 (72)
T d1ugva_          11 RKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTL--NGKTGLIPENYVEFLSG   68 (72)
T ss_dssp             CCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEES--SSCEEEEEGGGEEECCS
T ss_pred             EEEEEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEEe--CCCEEEEchHHEEECCC
Confidence            46999999999999999999999999888764 57888987  68999999999999864

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.5e-13  Score=81.77  Aligned_cols=56  Identities=21%  Similarity=0.493  Sum_probs=51.2

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhccc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   75 (191)
                      ..++|+++|.++..++|+|.+|+.+.+++..+++||.++.  +|+.|+||.+|++++.
T Consensus         3 ~~~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~~   60 (64)
T d1fmka1           3 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD   60 (64)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             eEEEECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEECc
Confidence            3689999999999999999999999999988889999987  5799999999998864

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.6e-12  Score=78.76  Aligned_cols=54  Identities=30%  Similarity=0.576  Sum_probs=48.3

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeee
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER  152 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~  152 (191)
                      .+++++||.++..++|+|++||+|.|++..+ +||+++...+|+.|+||.+||++
T Consensus         8 ~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~-~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           8 LVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCS-SEEEEEETTTCCEEEEEGGGEEE
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEeEEcC-CCEEEEeccCCeEeEEcHHHEEe
Confidence            5899999999999999999999999998764 58888776688999999999975

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.2e-12  Score=85.74  Aligned_cols=58  Identities=28%  Similarity=0.560  Sum_probs=52.2

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEec--CCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~~   77 (191)
                      ..++|+|+|.++..+||+|.+||+|.|+++.  +.+||.++.+|+.|+||.+||+.+...
T Consensus         6 ~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~~g~~G~~P~~Yve~~~~~   65 (93)
T d1uffa_           6 SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             CCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSS
T ss_pred             eEEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEeCCcEEEEchHHEEECCCC
Confidence            4689999999999999999999999999775  367999999999999999999988653

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=8.5e-14  Score=86.76  Aligned_cols=61  Identities=31%  Similarity=0.491  Sum_probs=53.0

Q ss_pred             CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..+++|+|+|.+...++|+|.+||+|.|++..+++||.++.. .+..|+||.+||+.+...+
T Consensus         6 ~~~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~~~~G~fP~~yv~~~~~~~   66 (71)
T d2hspa_           6 KCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYG-GKKQLWFPSNYVEEMVNPE   66 (71)
T ss_dssp             SSCEECCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCS-SCCSCCEETTTCCSCSCCC
T ss_pred             cEEEEEcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEEC-CeEEEEEchHHeEEcCCcc
Confidence            346899999999999999999999999999989999999874 5566799999999886543

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.3e-12  Score=82.88  Aligned_cols=59  Identities=17%  Similarity=0.406  Sum_probs=52.6

Q ss_pred             CcceEEEeecCCCCCCCCccccCCCEEEEEEec----CCCEEEEEeCCeeeEecCCchhcccC
Q psy15854         18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRV----DNNWFEGRIGTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~----~~~w~~~~~~g~~G~~P~~~v~~~~~   76 (191)
                      ....++|+++|.++..++|+|.+|++|.|++..    ..+||.++.+|+.||||++||+++..
T Consensus        12 ~~~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~g~~G~vP~~yv~~~~~   74 (79)
T d1uhca_          12 GNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTES   74 (79)
T ss_dssp             SSCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             CCEEEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEECCCEEEEehhhEEECCC
Confidence            344699999999999999999999999999864    36899999999999999999998853

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=1.3e-12  Score=80.66  Aligned_cols=56  Identities=21%  Similarity=0.359  Sum_probs=47.5

Q ss_pred             cEEEeeeccC------CCCCCccCCCCCEEEEeEE-CCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854         98 PYHALYNYKP------QNDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVERA  153 (191)
Q Consensus        98 ~~~~~~d~~~------~~~~eLs~~~ge~v~v~~~-~~~gw~~~~~~~~g~~G~vP~~~v~~i  153 (191)
                      +++++++|.+      +..++|+|++||+|.|++. .+.|||.|++.++|+.|+||++||+++
T Consensus         6 k~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_           6 KMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             EEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             cEEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            3677777764      5778999999999999975 467999999876899999999999975

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.1e-12  Score=85.67  Aligned_cols=58  Identities=19%  Similarity=0.236  Sum_probs=51.9

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEECC----CCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKCD----DGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~----~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      .++++|+|.++..+||+|++||+|.|+++.+    .+||.++.  +|+.||||.+||+++....
T Consensus        19 ~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~--~g~~G~~P~~yv~~~~~~~   80 (92)
T d1ug1a_          19 LFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDN--GVTKGFVYSSFLKPYNPRR   80 (92)
T ss_dssp             EEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEEC--SSSEEEEEGGGEEECCCCS
T ss_pred             EEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEe--cccEEEEEhhhceecCCcc
Confidence            4899999999999999999999999999753    68999997  7899999999999986443

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=8.8e-13  Score=82.27  Aligned_cols=60  Identities=27%  Similarity=0.479  Sum_probs=50.3

Q ss_pred             CcceEEEeecCCCC-CCCCccccCCCEEEEEEec-CCCEEEEEe--CCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQ-THLELSLVKGELVTLIRRV-DNNWFEGRI--GTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~-~~~els~~~g~~i~v~~~~-~~~w~~~~~--~g~~G~~P~~~v~~~~~~   77 (191)
                      ...+++|+|+|.++ ..++|+|.+|++|.|+... ..+||.+.+  .+++|+||.+||+.+..+
T Consensus         6 ~~~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i~~p   69 (72)
T d1spka_           6 SGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSGP   69 (72)
T ss_dssp             CSCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSSC
T ss_pred             CCCEEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEECCCC
Confidence            34579999999985 4678999999999998654 467999987  479999999999998754

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=9.6e-13  Score=80.92  Aligned_cols=55  Identities=31%  Similarity=0.662  Sum_probs=47.9

Q ss_pred             ceEEEeecCCCCCC-CCccccCCCEEEEEEecC-----CCEEEEEe-CCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTH-LELSLVKGELVTLIRRVD-----NNWFEGRI-GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~-~els~~~g~~i~v~~~~~-----~~w~~~~~-~g~~G~~P~~~v~~~   74 (191)
                      ..++|+|+|.++.. .+|+|.+|+++.|+.+.+     .+||.++. +|+.|+||++||+.+
T Consensus         6 ~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           6 EFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   67 (67)
T ss_dssp             EEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             EEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEEC
Confidence            36899999999876 489999999999998754     48999987 789999999999864

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.6e-12  Score=82.55  Aligned_cols=56  Identities=25%  Similarity=0.591  Sum_probs=50.5

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEEC----CCCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEKC----DDGWYVGSSQRSGCFGTFPGNYVERASL  155 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~----~~gw~~~~~~~~g~~G~vP~~~v~~i~~  155 (191)
                      .++|+|+|.++..++|+|.+||+|.|+++.    ..+||.++.  +|+.|+||.+||+.+..
T Consensus        15 ~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~--~g~~G~vP~~yv~~~~~   74 (79)
T d1uhca_          15 VYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEV--NGKKGYVPSNYIRKTES   74 (79)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEES--SSCEEEEEGGGEEECCS
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEE--CCCEEEEehhhEEECCC
Confidence            589999999999999999999999999864    468999997  79999999999998863

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.1e-13  Score=83.58  Aligned_cols=58  Identities=26%  Similarity=0.583  Sum_probs=51.6

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeC-CeeeEecCCchhcccCC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG-TRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~-g~~G~~P~~~v~~~~~~   77 (191)
                      ..++|+|+|.+...++|+|.+|++|.|++..+.+||.++.. ++.|+||.+|++++..+
T Consensus         7 ~~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~fP~~yv~~~~~~   65 (71)
T d2hspa_           7 CAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             SCEECCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCSSCCSCCEETTTCCSCSCC
T ss_pred             EEEEEcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEECCeEEEEEchHHeEEcCCc
Confidence            36899999999999999999999999999888999999874 45569999999998654

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7.2e-12  Score=76.51  Aligned_cols=55  Identities=24%  Similarity=0.515  Sum_probs=48.4

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhccc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQS   75 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   75 (191)
                      ..++|+++|.++..++|+|.+|+.+.+++. .++||.+..  +|+.|+||.+||+.+.
T Consensus         5 ~~vvAlydy~~~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~~~g~~G~vP~~yv~~~~   61 (65)
T d1qcfa1           5 IIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVD   61 (65)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             EEEEECCcCCCCCcCccCCCCCCEEEEEEE-CCCCEEEEEccCCCEEEEchHHeEECc
Confidence            357899999999999999999999999986 457888766  6899999999999874

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=6.9e-12  Score=75.87  Aligned_cols=53  Identities=17%  Similarity=0.446  Sum_probs=46.6

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQ   73 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~   73 (191)
                      ..++|+++|.++..++|+|.+|+++.|++..+ +||.+..  +|++|+||.+||++
T Consensus         7 ~~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~-~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           7 NLVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCS-SEEEEEETTTCCEEEEEGGGEEE
T ss_pred             cEEEECCCCCcCCcCCcCCCCCCEEEEeEEcC-CCEEEEeccCCeEeEEcHHHEEe
Confidence            46999999999999999999999999998764 5777665  68999999999975

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.7e-12  Score=82.94  Aligned_cols=57  Identities=30%  Similarity=0.516  Sum_probs=50.5

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEec---------------CCCEEEEEe--CCeeeEecCCchhcccC
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRV---------------DNNWFEGRI--GTRRGIFPVTYVEQQSR   76 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~---------------~~~w~~~~~--~g~~G~~P~~~v~~~~~   76 (191)
                      ..++|+|+|.+...++|+|.+|++|.|+...               +.+||.|++  +|+.||||++||+.+..
T Consensus         4 ~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~~   77 (83)
T d1phta_           4 YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   77 (83)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             CEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcCC
Confidence            4689999999999999999999999998752               357999987  78999999999998854

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=1.3e-11  Score=75.95  Aligned_cols=54  Identities=26%  Similarity=0.434  Sum_probs=46.2

Q ss_pred             eEEEeecCCC------CCCCCccccCCCEEEEEEec-CCCEEEEEe--CCeeeEecCCchhcc
Q psy15854         21 QARAKFNFVA------QTHLELSLVKGELVTLIRRV-DNNWFEGRI--GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        21 ~~~a~~~~~~------~~~~els~~~g~~i~v~~~~-~~~w~~~~~--~g~~G~~P~~~v~~~   74 (191)
                      +++++++|.+      +..++|+|++||+|.|++.. +.+||.|++  +|+.||||++||+++
T Consensus         6 k~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_           6 KMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             EEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             cEEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            5778877765      67899999999999999764 578999997  689999999999875

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=3.2e-12  Score=81.90  Aligned_cols=58  Identities=34%  Similarity=0.725  Sum_probs=49.1

Q ss_pred             ccEEEeeeccCCCCCCccCCCCCEEEEeEEC-----CCCEEEEEeC--------CCCcEEEEcCCCeeecc
Q psy15854         97 VPYHALYNYKPQNDDELELREGETVFVMEKC-----DDGWYVGSSQ--------RSGCFGTFPGNYVERAS  154 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-----~~gw~~~~~~--------~~g~~G~vP~~~v~~i~  154 (191)
                      .+++|+|+|.++..++|+|++||+|.|+.+.     .+|||.|...        .+|+.|+||+|||+.|+
T Consensus        13 ~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~ie   83 (83)
T d1bb9a_          13 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ   83 (83)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEEC
T ss_pred             EEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEcC
Confidence            3689999999999999999999999999865     3679999752        13578999999999874

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=5.3e-12  Score=74.78  Aligned_cols=52  Identities=19%  Similarity=0.486  Sum_probs=44.5

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEEEEecCC-CEEEEEe--CCeeeEecCCchhc
Q psy15854         22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDN-NWFEGRI--GTRRGIFPVTYVEQ   73 (191)
Q Consensus        22 ~~a~~~~~~~~~~els~~~g~~i~v~~~~~~-~w~~~~~--~g~~G~~P~~~v~~   73 (191)
                      ++|+|+|.++..++|+|.+|+.+.+++..+. +||.+..  +|++|+||++||+.
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyvev   56 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   56 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEEC
Confidence            5899999999999999999999999987664 4565544  68999999999863

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.2e-12  Score=83.38  Aligned_cols=60  Identities=32%  Similarity=0.526  Sum_probs=49.2

Q ss_pred             ccEEEeeeccCCC------CCCccCCCCCEEEEeEECC-CCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854         97 VPYHALYNYKPQN------DDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVERASLAL  157 (191)
Q Consensus        97 ~~~~~~~d~~~~~------~~eLs~~~ge~v~v~~~~~-~gw~~~~~~~~g~~G~vP~~~v~~i~~~~  157 (191)
                      ..|+|+|||.++.      .+||+|++||+|.|+...+ ++||.+... +|+.||||.+||+.+....
T Consensus        18 ~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~-~G~~G~~P~nyve~~~~~~   84 (96)
T d1wiea_          18 HLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL-DGQRGLVPSNFVDFVQDNE   84 (96)
T ss_dssp             EEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEET-TCCBCBCCTTSEECCCSCC
T ss_pred             eEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeC-CCCEEEEehHHeEECCCcc
Confidence            3699999998753      4789999999999997654 567777764 7899999999999987554

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=3.9e-12  Score=83.77  Aligned_cols=57  Identities=19%  Similarity=0.448  Sum_probs=48.6

Q ss_pred             ccEEEeeeccCCC-----CCCccCCCCCEEEEeEECCCCEEEEEe----CCCCcEEEEcCCCeeec
Q psy15854         97 VPYHALYNYKPQN-----DDELELREGETVFVMEKCDDGWYVGSS----QRSGCFGTFPGNYVERA  153 (191)
Q Consensus        97 ~~~~~~~d~~~~~-----~~eLs~~~ge~v~v~~~~~~gw~~~~~----~~~g~~G~vP~~~v~~i  153 (191)
                      .+++|+|||.++.     ..+|+|++||+|.|+++.+.+||.++.    ..+|+.|+||++||...
T Consensus         2 ~~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e~   67 (96)
T d1kjwa1           2 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (96)
T ss_dssp             EEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceeee
Confidence            4578999999864     358999999999999999999999985    23678999999999754

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.1e-11  Score=81.39  Aligned_cols=60  Identities=20%  Similarity=0.463  Sum_probs=49.3

Q ss_pred             CcceEEEeecCCCCC------CCCccccCCCEEEEEEecC-CCEEEEEe-CCeeeEecCCchhcccCC
Q psy15854         18 SEGQARAKFNFVAQT------HLELSLVKGELVTLIRRVD-NNWFEGRI-GTRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~------~~els~~~g~~i~v~~~~~-~~w~~~~~-~g~~G~~P~~~v~~~~~~   77 (191)
                      ....++|+|||+++.      ++||+|++|++|.|+...+ .+||.+.. +|++||||.+||+++...
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~~G~~G~~P~nyve~~~~~   83 (96)
T d1wiea_          16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDN   83 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSC
T ss_pred             CceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeCCCCEEEEehHHeEECCCc
Confidence            345799999998753      5889999999999997655 46888875 789999999999988643

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=5.1e-11  Score=79.52  Aligned_cols=59  Identities=25%  Similarity=0.366  Sum_probs=50.2

Q ss_pred             cEEEeeeccCCCCCCccCCCCCEEEEeEE---CCCCEEEEEeCC------CCcEEEEcCCCeeecccc
Q psy15854         98 PYHALYNYKPQNDDELELREGETVFVMEK---CDDGWYVGSSQR------SGCFGTFPGNYVERASLA  156 (191)
Q Consensus        98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~---~~~gw~~~~~~~------~g~~G~vP~~~v~~i~~~  156 (191)
                      .++|+|+|.++..++|+|++|++|.|+++   .+.+||.|....      +++.||||.+||+.+...
T Consensus        23 ~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~~~   90 (106)
T d1i1ja_          23 MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTL   90 (106)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEEC
T ss_pred             EEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEcccc
Confidence            58999999999999999999999999987   357899998631      356899999999987643

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=4.4e-12  Score=83.54  Aligned_cols=54  Identities=22%  Similarity=0.413  Sum_probs=47.6

Q ss_pred             eEEEeecCCCCC-----CCCccccCCCEEEEEEecCCCEEEEEe------CCeeeEecCCchhcc
Q psy15854         21 QARAKFNFVAQT-----HLELSLVKGELVTLIRRVDNNWFEGRI------GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        21 ~~~a~~~~~~~~-----~~els~~~g~~i~v~~~~~~~w~~~~~------~g~~G~~P~~~v~~~   74 (191)
                      .++|+|||+++.     ..+|+|++|++|.|+...+++||.++.      .|++||||+||+++.
T Consensus         3 ~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e~   67 (96)
T d1kjwa1           3 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (96)
T ss_dssp             EEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceeee
Confidence            478999999975     358999999999999998999999975      478999999999864

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.15  E-value=2.8e-11  Score=78.90  Aligned_cols=55  Identities=18%  Similarity=0.422  Sum_probs=48.7

Q ss_pred             CcceEEEeecCCCCCCCC-------ccccCCCEEEEEEecCCCEEEEEe---CCeeeEecCCchh
Q psy15854         18 SEGQARAKFNFVAQTHLE-------LSLVKGELVTLIRRVDNNWFEGRI---GTRRGIFPVTYVE   72 (191)
Q Consensus        18 ~~~~~~a~~~~~~~~~~e-------ls~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~   72 (191)
                      ....++|+|||++..+++       |+|.+|++|.|+...+++||.|++   +|+.|+||++++-
T Consensus        20 ~~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~~   84 (96)
T d1t0ha_          20 VAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKL   84 (96)
T ss_dssp             CCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHHH
T ss_pred             ccEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHHH
Confidence            344789999999998888       999999999999999999999998   5788999997643

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=2.4e-11  Score=77.67  Aligned_cols=55  Identities=27%  Similarity=0.509  Sum_probs=47.8

Q ss_pred             ceEEEeecCCCCCCCCccccCCCEEEEEEecC-----CCEEEEEe----------CCeeeEecCCchhcc
Q psy15854         20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVD-----NNWFEGRI----------GTRRGIFPVTYVEQQ   74 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-----~~w~~~~~----------~g~~G~~P~~~v~~~   74 (191)
                      ..++|+|+|.++..++|+|++|++|.|+...+     ++||.|..          +|+.|+||+|||+.+
T Consensus        13 ~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~i   82 (83)
T d1bb9a_          13 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV   82 (83)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             EEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEc
Confidence            36899999999999999999999999998643     57999975          257899999999875

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=7.7e-11  Score=78.62  Aligned_cols=59  Identities=20%  Similarity=0.359  Sum_probs=50.6

Q ss_pred             cceEEEeecCCCCCCCCccccCCCEEEEEEe---cCCCEEEEEeC--------CeeeEecCCchhcccCC
Q psy15854         19 EGQARAKFNFVAQTHLELSLVKGELVTLIRR---VDNNWFEGRIG--------TRRGIFPVTYVEQQSRA   77 (191)
Q Consensus        19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~---~~~~w~~~~~~--------g~~G~~P~~~v~~~~~~   77 (191)
                      ...++|+|+|.+...++|+|++|++|.|+.+   .+.+||.|...        |+.||||.+||+++...
T Consensus        21 ~~~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~~~   90 (106)
T d1i1ja_          21 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTL   90 (106)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEEC
T ss_pred             eeEEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEcccc
Confidence            4468999999999999999999999999986   34789999763        36899999999987644

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.08  E-value=5.5e-11  Score=77.50  Aligned_cols=54  Identities=17%  Similarity=0.418  Sum_probs=47.4

Q ss_pred             ccEEEeeeccCCCCCC-------ccCCCCCEEEEeEECCCCEEEEEeCC-CCcEEEEcCCCe
Q psy15854         97 VPYHALYNYKPQNDDE-------LELREGETVFVMEKCDDGWYVGSSQR-SGCFGTFPGNYV  150 (191)
Q Consensus        97 ~~~~~~~d~~~~~~~e-------Ls~~~ge~v~v~~~~~~gw~~~~~~~-~g~~G~vP~~~v  150 (191)
                      ..++++|||.+...++       |+|.+||+|.|++..+.+||.|+... +|+.|+||++++
T Consensus        22 ~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          22 FAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             EEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             EEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHH
Confidence            4589999999998777       99999999999999999999999842 467899999864

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=3.2e-10  Score=79.88  Aligned_cols=53  Identities=15%  Similarity=0.464  Sum_probs=48.2

Q ss_pred             eEEEeecCCCCCCCC-------ccccCCCEEEEEEecCCCEEEEEe---CCeeeEecCCchhc
Q psy15854         21 QARAKFNFVAQTHLE-------LSLVKGELVTLIRRVDNNWFEGRI---GTRRGIFPVTYVEQ   73 (191)
Q Consensus        21 ~~~a~~~~~~~~~~e-------ls~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~~   73 (191)
                      .++|+|||.+..+++       |+|.+||+|.|+...+.+||.|++   +|+.|+||++++.+
T Consensus        25 ~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~~e   87 (145)
T d1vyva1          25 AVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLE   87 (145)
T ss_dssp             EEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHHHH
T ss_pred             EEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchhhh
Confidence            689999999999887       999999999999999999999997   68999999877544

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=5.1e-10  Score=78.80  Aligned_cols=55  Identities=15%  Similarity=0.328  Sum_probs=48.1

Q ss_pred             cEEEeeeccCCCCCC-------ccCCCCCEEEEeEECCCCEEEEEeC-CCCcEEEEcCCCeee
Q psy15854         98 PYHALYNYKPQNDDE-------LELREGETVFVMEKCDDGWYVGSSQ-RSGCFGTFPGNYVER  152 (191)
Q Consensus        98 ~~~~~~d~~~~~~~e-------Ls~~~ge~v~v~~~~~~gw~~~~~~-~~g~~G~vP~~~v~~  152 (191)
                      .++++|||.+...++       |+|++||+|.|++..+.+||.|++. .+|..|+||.+|+..
T Consensus        25 ~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~~e   87 (145)
T d1vyva1          25 AVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLE   87 (145)
T ss_dssp             EEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHHHH
T ss_pred             EEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchhhh
Confidence            589999999998776       9999999999999999999999973 358899999976543

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.64  E-value=1.4e-08  Score=70.17  Aligned_cols=54  Identities=15%  Similarity=0.365  Sum_probs=47.0

Q ss_pred             ceEEEeecCCCCCCCC-------ccccCCCEEEEEEecCCCEEEEEe---CCeeeEecCCchhc
Q psy15854         20 GQARAKFNFVAQTHLE-------LSLVKGELVTLIRRVDNNWFEGRI---GTRRGIFPVTYVEQ   73 (191)
Q Consensus        20 ~~~~a~~~~~~~~~~e-------ls~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~~   73 (191)
                      -.++|+|+|++..+++       |+|.+||+|.|+...+.+||.++.   +|..|+||+.++.+
T Consensus        24 ~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~lE   87 (136)
T d1vyua1          24 FAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLE   87 (136)
T ss_dssp             EEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHHHH
T ss_pred             EEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHHHh
Confidence            3589999999988777       889999999999999999999987   46889999987433

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.63  E-value=1.2e-08  Score=70.62  Aligned_cols=53  Identities=17%  Similarity=0.369  Sum_probs=45.8

Q ss_pred             cEEEeeeccCCCCCC-------ccCCCCCEEEEeEECCCCEEEEEeCC-CCcEEEEcCCCe
Q psy15854         98 PYHALYNYKPQNDDE-------LELREGETVFVMEKCDDGWYVGSSQR-SGCFGTFPGNYV  150 (191)
Q Consensus        98 ~~~~~~d~~~~~~~e-------Ls~~~ge~v~v~~~~~~gw~~~~~~~-~g~~G~vP~~~v  150 (191)
                      .++++|+|.+...++       |+|++||++.|++..+.+||.++..+ .+..|+||..|+
T Consensus        25 ~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~   85 (136)
T d1vyua1          25 AVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR   85 (136)
T ss_dssp             EEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             EEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHH
Confidence            588999999876666       89999999999999999999999742 467899999874

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.0012  Score=39.96  Aligned_cols=42  Identities=21%  Similarity=0.448  Sum_probs=37.6

Q ss_pred             CCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCee
Q psy15854        109 NDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE  151 (191)
Q Consensus       109 ~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~  151 (191)
                      ...+|.++.||.+.|+...+.+-|.+++. .|.-|+|+..++-
T Consensus        35 g~~dL~vk~GE~ldVIr~t~~~k~LcRN~-~GkYGYV~~~~l~   76 (77)
T d1ri9a_          35 GTRDLQVKPGESLEVIQTTDDTKVLCRNE-EGKYGYVLRSYLA   76 (77)
T ss_dssp             CTTBCCCCTTCBCEEEEESSSSEEEEEET-TTEEEEEEGGGSC
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEEcC-CCcEEEEEeeeec
Confidence            44689999999999999999999999997 8999999988763

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0056  Score=36.82  Aligned_cols=40  Identities=20%  Similarity=0.273  Sum_probs=35.7

Q ss_pred             CCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCch
Q psy15854         32 THLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYV   71 (191)
Q Consensus        32 ~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v   71 (191)
                      +..+|++.+|+.+.|++..+.+-|.|++ .|+-|+|+..++
T Consensus        35 g~~dL~vk~GE~ldVIr~t~~~k~LcRN~~GkYGYV~~~~l   75 (77)
T d1ri9a_          35 GTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYL   75 (77)
T ss_dssp             CTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEEcCCCcEEEEEeeee
Confidence            4568999999999999998899999998 799999998765